Citrus Sinensis ID: 012238

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------
Protein Sequence
MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHccccccccccccccccHHHHHcccccccccccccccccccccccccccccHHHHHHcccccccccccccEEEccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccHHHHcccEEEEEccccHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHHHHHHcccccEEEcccccccccccHHHHHHHHHHHHccccEEEEEccccccccccccccEEEEEcccHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHccEEEEcccccEEccccccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHccccccccccEHcHHcccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHcccccEEccccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccHHHHcccEEEEEEEHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHcccEEEEEEcEEccccEEcHHHHHHHHHHcccccEEEEEccccccccccccHHHHHHHHHHHHHHccEEEEEEcccccccccHHHHcHHHHHHHHcccccEEEEEcccccccHHHcEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccHHHHccccEEEccccHHHHHHHHHHccEEcccccEEEHHHcccccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MASTMLSIasatpsaslsmHEKLKGKvklgsttnstagfiktksfGRVSMVAAVNvsrfegvtmappdpilgvseafkadtdekklnlgvgayrteelqPYVLDVVKKAENLMlergenkeylpieGLAAFNKVTAELLfgadnsvlKEQRVATVQGLSGTGSLRLAAALIERYFPgakvlissptwgnhknifndarvpwseyryydpktvgldfEGMIADikaapggsfillhgcahnptgidptpeQWEKIADVIQEknhipffdvayqgfasgsldndassVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLarpmysnppvhgARIVANvvgnpalfDEWKAEMEMMAGRIKNVRQKLFDSlsakdksgkdWSFILRQIGMfsftglnkaqsdnmtnKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Flexible Loop (DISEMBL)
mastmlsiasatpsaslsMHEKLKGKvklgsttnstagfiktksfgrVSMVAAVNVSrfegvtmappdpILGVSEAFKADTDEKKLnlgvgayrteelqpyvLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATvqglsgtgSLRLAAALIERYFPGAKVLissptwgnhknifndarvpwsEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSlsakdksgkdWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Low Complexity Region (SEG)
MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Disordered region (IsUnstruct)
************************************AGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA***SGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSY****
Disordered Region (DISOPRED)
********************************************************SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNV*
Disordered Region (DISEMBL)
*******************HEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Disordered Region (DISPRO)
************************************************SM********FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	467	2.2.26 [Sep-21-2011]
P46248	453	Aspartate aminotransferas	yes	no	0.970	1.0	0.832	0.0
P26563	454	Aspartate aminotransferas	N/A	no	0.942	0.969	0.830	0.0
P37833	407	Aspartate aminotransferas	no	no	0.843	0.968	0.549	1e-132
P28734	405	Aspartate aminotransferas	N/A	no	0.843	0.972	0.559	1e-131
P28011	418	Aspartate aminotransferas	N/A	no	0.843	0.942	0.544	1e-129
P46645	405	Aspartate aminotransferas	no	no	0.843	0.972	0.534	1e-128
P46644	449	Aspartate aminotransferas	no	no	0.843	0.877	0.537	1e-127
Q54SF7	438	Aspartate aminotransferas	yes	no	0.839	0.894	0.545	1e-124
Q55F21	426	Aspartate aminotransferas	no	no	0.888	0.974	0.496	1e-121
P12344	430	Aspartate aminotransferas	yes	no	0.832	0.904	0.518	1e-118

>sp|P46248|AAT5_ARATH Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP5 PE=1 SV=2

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/467 (83%), Positives = 417/467 (89%), Gaps = 14/467 (2%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFE 60
           MAS MLS+ S     SL   E  K K+KLG  T+++  F+K KSF RV+M  AV  SRFE
Sbjct: 1   MASLMLSLGST----SLLPREINKDKLKLG--TSASNPFLKAKSFSRVTMTVAVKPSRFE 54

Query: 61  GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK 120
           G+TMAPPDPILGVSEAFKADT+  KLNLGVGAYRTEELQPYVL+VVKKAENLMLERG+NK
Sbjct: 55  GITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGDNK 114

Query: 121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180
           EYLPIEGLAAFNK TAELLFGA + V+KEQRVAT+QGLSGTGSLRLAAALIERYFPGAKV
Sbjct: 115 EYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYFPGAKV 174

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
           +ISSPTWGNHKNIFNDA+VPWSEYRYYDPKT+GLDFEGMIADIK AP GSFILLHGCAHN
Sbjct: 175 VISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLHGCAHN 234

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTGIDPTPEQW KIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLFA RGME  VAQ
Sbjct: 235 PTGIDPTPEQWVKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFAERGMEFFVAQ 294

Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV 360
           SYSKNLGLYAERIGA+NVVCSS+D A R        VKSQLKR+ARPMYSNPPVHGARIV
Sbjct: 295 SYSKNLGLYAERIGAINVVCSSADAATR--------VKSQLKRIARPMYSNPPVHGARIV 346

Query: 361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL 420
           ANVVG+  +F EWKAEMEMMAGRIK VRQ+L+DSL +KDKSGKDWSFIL+QIGMFSFTGL
Sbjct: 347 ANVVGDVTMFSEWKAEMEMMAGRIKTVRQELYDSLVSKDKSGKDWSFILKQIGMFSFTGL 406

Query: 421 NKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 467
           NKAQSDNMT+KWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Sbjct: 407 NKAQSDNMTDKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 453

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 1

>sp|P26563|AATM_LUPAN Aspartate aminotransferase P2, mitochondrial (Fragment) OS=Lupinus angustifolius PE=2 SV=1

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/449 (83%), Positives = 403/449 (89%), Gaps = 9/449 (2%)

Query: 20  HEKLK-GKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFK 78
           ++KLK G   L  +   +  F   KS  R+SMVAAVNVSRFEG+ MAPPDPILGVSEAF+
Sbjct: 14  NDKLKVGGNSLRFSKEQSNTFSNAKSSCRISMVAAVNVSRFEGIPMAPPDPILGVSEAFR 73

Query: 79  ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL 138
           ADT + KLNLGVGAYRTEELQPYVL VV KAENLMLERG+NKEYL IEGLAAFNK TAEL
Sbjct: 74  ADTSDAKLNLGVGAYRTEELQPYVLKVVNKAENLMLERGQNKEYLAIEGLAAFNKATAEL 133

Query: 139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDAR 198
           L GADN  +K+QRVATVQGLSGTGSLRL AALIERYFPGAKVLIS+PTWGNHKNIFNDAR
Sbjct: 134 LLGADNPAIKQQRVATVQGLSGTGSLRLGAALIERYFPGAKVLISAPTWGNHKNIFNDAR 193

Query: 199 VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI 258
           VPWSEYRYYDPKTVGLDFEGMI DIKAAP G+F+LLHGCAHNPTGIDPTPEQWEKIADVI
Sbjct: 194 VPWSEYRYYDPKTVGLDFEGMIEDIKAAPEGTFVLLHGCAHNPTGIDPTPEQWEKIADVI 253

Query: 259 QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV 318
           QEKNHIPFFDVAYQGFASGSLD DA+SVRLF  RG+E+LVAQSYSKNLGLYAERIGA+NV
Sbjct: 254 QEKNHIPFFDVAYQGFASGSLDEDAASVRLFVARGLEVLVAQSYSKNLGLYAERIGAINV 313

Query: 319 VCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME 378
           + SS + AAR        VKSQLKR+ARPMYSNPPVHGARIVA++VGNPALFDEWK EME
Sbjct: 314 ISSSPESAAR--------VKSQLKRIARPMYSNPPVHGARIVADIVGNPALFDEWKVEME 365

Query: 379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTK 438
           MMAGRIKNVRQ+L+DS+S+KDKSGKDWSFIL+QIGMFS+TGLNK QSDNMTNKWHVYMTK
Sbjct: 366 MMAGRIKNVRQQLYDSISSKDKSGKDWSFILKQIGMFSYTGLNKNQSDNMTNKWHVYMTK 425

Query: 439 DGRISLAGLSLAKCEYLADAIIDSYHNVS 467
           DGRISLAGLSLAKCEYLADAIIDS+H VS
Sbjct: 426 DGRISLAGLSLAKCEYLADAIIDSFHYVS 454

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Lupinus angustifolius (taxid: 3871)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P37833|AATC_ORYSJ Aspartate aminotransferase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os01g0760600 PE=2 SV=1

 Score =  472 bits (1214), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 222/404 (54%), Positives = 295/404 (73%), Gaps = 10/404 (2%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F G+  AP DPILGV+ A+  D    K+NLGVGAYRTEE +P VL+VV++AE +++  
Sbjct: 5   SVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINN 64

Query: 117 GEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               KEYLPI GLA FNK++A+L+FGAD+  ++E RVATVQ LSGTGSLR+    + R++
Sbjct: 65  PSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 124

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               + I  PTWGNH  +F  A +    YRYYDP T GLDF+G++ D+ +AP G+ +LLH
Sbjct: 125 HERTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLLH 184

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DPT +QWE+I  +++ K  +PFFD AYQGFASGSLD DA SVR+F   G E
Sbjct: 185 ACAHNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVADGGE 244

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
           LL+AQSY+KN+GLY ER+GA+++VC S+D+A R        V+SQLK + RPMYSNPP+H
Sbjct: 245 LLMAQSYAKNMGLYGERVGALSIVCGSADVAVR--------VESQLKLVIRPMYSNPPIH 296

Query: 356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
           GA IVA ++ + A+F+EW  E++ MA RI ++RQ+LFD+L  ++  G DWS I++QIGMF
Sbjct: 297 GASIVATILKDSAMFNEWTVELKGMADRIISMRQQLFDALKTRETPG-DWSHIIKQIGMF 355

Query: 416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
           +FTGLN  Q   M  ++H+YMT DGRIS+AGLS     +LADAI
Sbjct: 356 TFTGLNSDQVAFMRQEYHIYMTSDGRISMAGLSGRTIPHLADAI 399

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P28734|AATC_DAUCA Aspartate aminotransferase, cytoplasmic OS=Daucus carota PE=2 SV=1

 Score =  469 bits (1208), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/404 (55%), Positives = 298/404 (73%), Gaps = 10/404 (2%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-E 115
           S F  V  AP DPILGV+ A+  D    KLNLGVGAYRTEE +P VL+VVKKAE +++ +
Sbjct: 3   SVFANVVRAPEDPILGVTVAYHKDQSPNKLNLGVGAYRTEEGKPLVLNVVKKAEQMLVND 62

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
           +   KEYLPI GLA FNK++A+L+FGAD+  ++E RVATVQ LSGTGSLR+    + R++
Sbjct: 63  QSRVKEYLPIVGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 122

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               V I  PTWGNH  IF  A +    YRYY+P+T GLDFEGM+ D+ +AP G+ +LLH
Sbjct: 123 HEHTVYIPQPTWGNHPKIFTLAGLSVKTYRYYNPETRGLDFEGMLEDLGSAPLGAIVLLH 182

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DPT EQWE+I  +++ K+ +PFFD AYQGFASGSLD DA SVR+F   G E
Sbjct: 183 ACAHNPTGVDPTIEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDADAQSVRIFVADGGE 242

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
            L AQSY+KN+GLY ER+GA+++VC ++D+A++        V+SQLK + RPMYS+PP+H
Sbjct: 243 CLAAQSYAKNMGLYGERVGALSIVCKTADVASK--------VESQLKLVIRPMYSSPPLH 294

Query: 356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
           GA IVA ++ +  L++EW  E++ MA RI ++RQ+LF++L AK   G DWS I++QIGMF
Sbjct: 295 GASIVAAILKDGDLYNEWTLELKAMADRIISMRQELFNALQAKGTPG-DWSHIVKQIGMF 353

Query: 416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
           +FTGLN  Q   MTN++H+Y+T DGRIS+AGLS     +LADAI
Sbjct: 354 TFTGLNSEQVTFMTNEYHIYLTSDGRISMAGLSSRTVPHLADAI 397

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P28011|AAT1_MEDSA Aspartate aminotransferase 1 OS=Medicago sativa GN=AAT-1 PE=2 SV=2

 Score =  463 bits (1191), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/404 (54%), Positives = 294/404 (72%), Gaps = 10/404 (2%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-E 115
           S F  +  AP DPILGV+ A+  D    KLNLGVGAYRTEE +P VLDVV++ E  +L +
Sbjct: 16  SVFAHLVRAPEDPILGVTVAYNKDPSPIKLNLGVGAYRTEEGKPLVLDVVRRVERQLLND 75

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              NKEY+PI GLA FNK++A+L+FGAD+  ++E RV TVQGLSGTGSLR+    + +++
Sbjct: 76  MSRNKEYIPIVGLADFNKLSAKLIFGADSPAIQENRVTTVQGLSGTGSLRVGGEFLAKHY 135

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               + + +PTWGNH  +FN A +    YRYY P T GLDF+G++ D+ +AP GS +LLH
Sbjct: 136 HQRIIYLPTPTWGNHTKVFNLAGLTVKTYRYYAPATRGLDFQGLLEDLGSAPSGSVVLLH 195

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DPT EQWE+I  +I+ K+ +PFFD AYQGFASGSLD DA  VRLF   G E
Sbjct: 196 ACAHNPTGVDPTLEQWEQIRQLIRSKSLLPFFDSAYQGFASGSLDADAQPVRLFVADGGE 255

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
           LLVAQSY+KN+GLY ER+GA+++V  S+D+++R        V+SQLK + RPMYS+PP+H
Sbjct: 256 LLVAQSYAKNMGLYGERVGALSIVSKSADVSSR--------VESQLKLVIRPMYSSPPIH 307

Query: 356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
           GA IVA ++ +  L+++W  E++ MA RI N+RQ+LFD+L A+   G DWS I++QIGMF
Sbjct: 308 GASIVAAILKDRDLYNDWTIELKAMADRIINMRQQLFDALRARGTPG-DWSHIIKQIGMF 366

Query: 416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
           +FTGLN  Q   +T ++H+Y+T DGRIS+AGLS     +LA AI
Sbjct: 367 TFTGLNPEQVSILTKEYHIYLTSDGRISMAGLSSKTVPHLAHAI 410

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P46645|AAT2_ARATH Aspartate aminotransferase, cytoplasmic isozyme 1 OS=Arabidopsis thaliana GN=ASP2 PE=1 SV=2

 Score =  459 bits (1182), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/404 (53%), Positives = 296/404 (73%), Gaps = 10/404 (2%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAEN-LMLE 115
           S F  V  AP DPILGV+ A+  D    K+NLGVGAYRTEE +P VLDVV+KAE  L+ +
Sbjct: 3   SVFSNVARAPEDPILGVTVAYNNDPSPVKINLGVGAYRTEEGKPLVLDVVRKAEQQLVND 62

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               KEY+PI G++ FNK++A+L+ GAD+  + E RV TVQ LSGTGSLR+ A  ++ ++
Sbjct: 63  PSRVKEYIPIVGISDFNKLSAKLILGADSPAITESRVTTVQCLSGTGSLRVGAEFLKTHY 122

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
             + + I  PTWGNH  +FN A +    +RYYDP T GLDF+G++ D+ AAP G+ +LLH
Sbjct: 123 HQSVIYIPKPTWGNHPKVFNLAGLSVEYFRYYDPATRGLDFKGLLEDLGAAPSGAIVLLH 182

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DPT EQWE+I  +++ K+ +PFFD AYQGFASGSLD DA SVR F   G E
Sbjct: 183 ACAHNPTGVDPTSEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDTDAQSVRTFVADGGE 242

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
            L+AQSY+KN+GLY ER+GA+++VC S+D+A++        V+SQ+K + RPMYS+PP+H
Sbjct: 243 CLIAQSYAKNMGLYGERVGALSIVCKSADVASK--------VESQVKLVVRPMYSSPPIH 294

Query: 356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
           GA IVA ++ +  +++ W  E++ MA RIK++RQ+LF+++ A+   G DWS I++QIGMF
Sbjct: 295 GASIVATILKSSDMYNNWTIELKEMADRIKSMRQQLFEAIQARGTPG-DWSHIIKQIGMF 353

Query: 416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
           +FTGLNK Q + MT ++H+YMT DGRIS+AGLS     +LADA+
Sbjct: 354 TFTGLNKEQVEFMTKEFHIYMTSDGRISMAGLSSKTVPHLADAM 397

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P46644|AAT3_ARATH Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP3 PE=1 SV=1

 Score =  455 bits (1171), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/404 (53%), Positives = 290/404 (71%), Gaps = 10/404 (2%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAEN-LMLE 115
           S F  +  AP DPILGV+ A+  D    KLNLGVGAYRTEE +P VL+VV+KAE  L+ +
Sbjct: 47  SVFSHLVQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQQLIND 106

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
           R   KEYLPI GL  FNK++A+L+ GAD+  ++E R+ TV+ LSGTGSLR+    + +++
Sbjct: 107 RTRIKEYLPIVGLVEFNKLSAKLILGADSPAIRENRITTVECLSGTGSLRVGGEFLAKHY 166

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               + I+ PTWGNH  IF  A +    YRYYDP T GL+F+G++ D+ AA  GS +LLH
Sbjct: 167 HQKTIYITQPTWGNHPKIFTLAGLTVKTYRYYDPATRGLNFQGLLEDLGAAAPGSIVLLH 226

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DPT +QWE+I  +++ K  +PFFD AYQGFASGSLD DA  +R+F   G E
Sbjct: 227 ACAHNPTGVDPTIQQWEQIRKLMRSKGLMPFFDSAYQGFASGSLDTDAKPIRMFVADGGE 286

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
            LVAQSY+KN+GLY ER+GA+++VC S+D+A R        V+SQLK + RPMYS+PP+H
Sbjct: 287 CLVAQSYAKNMGLYGERVGALSIVCKSADVAGR--------VESQLKLVIRPMYSSPPIH 338

Query: 356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
           GA IVA ++ +  LF+EW  E++ MA RI ++R++LF++L  +   G DWS I++QIGMF
Sbjct: 339 GASIVAVILRDKNLFNEWTLELKAMADRIISMRKQLFEALRTRGTPG-DWSHIIKQIGMF 397

Query: 416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
           +FTGLN AQ   MT ++H+YMT DGRIS+AGLS     +LADAI
Sbjct: 398 TFTGLNPAQVSFMTKEYHIYMTSDGRISMAGLSSKTVPHLADAI 441

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|Q54SF7|AATC_DICDI Aspartate aminotransferase, cytoplasmic OS=Dictyostelium discoideum GN=aatB PE=3 SV=1

 Score =  444 bits (1142), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/405 (54%), Positives = 281/405 (69%), Gaps = 13/405 (3%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           F  V + P DPILGVS AFKADTD +K++  VGAYR E  +PYVL  V +AE  +L  G 
Sbjct: 41  FANVPLGPVDPILGVSTAFKADTDPRKVDTSVGAYRDENGKPYVLKCVFEAEKRLL--GA 98

Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP-G 177
            KEYLPI+G+  FNK++A+LL+G D  V KE+R+ TVQ LSGTG+LR+    I +Y P G
Sbjct: 99  PKEYLPIDGIPEFNKLSAKLLYG-DAMVGKEKRMVTVQALSGTGALRIGIIFIRKYLPAG 157

Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
             V IS P+W NH NI  ++ V  +EY YYDPKT GLDF GMI D++AAP GS  +LH C
Sbjct: 158 TVVYISRPSWTNHHNICKESGVQSAEYAYYDPKTKGLDFTGMINDMRAAPNGSVFVLHLC 217

Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
           AHNPTG+DPT EQW  IADV++EKNHIPF D AYQG+ASG LD DA S RLF  RG E+ 
Sbjct: 218 AHNPTGVDPTHEQWNIIADVMREKNHIPFMDCAYQGYASGDLDYDAYSARLFLNRGFEMF 277

Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGA 357
            AQSYSKN GLY ER GA+ +V    D+        + ++ SQLK   R MYS+PP HGA
Sbjct: 278 SAQSYSKNFGLYGERTGALTIVSHREDV--------IPKMLSQLKMDIRAMYSSPPTHGA 329

Query: 358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF 417
           R+V  V+ +P L   W  E++ M+GRIK+VRQK+ D+L A+   G +W  I+ QIGMF++
Sbjct: 330 RLVTTVLSDPELTALWVKELKEMSGRIKDVRQKVLDALIARKVPG-NWEHIVNQIGMFTY 388

Query: 418 TGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDS 462
           TGL K Q D + NK+H+Y+   GR+SLAGL+    +Y ADAI+D+
Sbjct: 389 TGLTKPQVDILVNKYHIYLLGSGRVSLAGLNNKNIDYFADAILDA 433

Plays a key role in amino acid metabolism.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|Q55F21|AATM_DICDI Aspartate aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=aatA PE=3 SV=1

 Score =  436 bits (1122), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/425 (49%), Positives = 287/425 (67%), Gaps = 10/425 (2%)

Query: 36  TAGFIKTKSFGRVSMVA-AVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYR 94
           +A  I    FG+ ++   + N + +  V   P DPILGVS A+  DT   K+NLGVGAYR
Sbjct: 4   SARLISNIKFGQKNIRQFSTNTNWWANVQKGPEDPILGVSIAYNKDTSPSKINLGVGAYR 63

Query: 95  TEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVAT 154
            E  +PYVLD VKKA+  + E   + EY PI G+AAFN++ A+L  G +   +KE+R+AT
Sbjct: 64  DENGKPYVLDCVKKADKKIYEANVDHEYAPIVGVAAFNQLAAQLALGEECKHIKEKRIAT 123

Query: 155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL 214
           VQ +SGTG+LR+AA    R+  G    + +PTWGNH  IFNDA +P   Y YY+P T GL
Sbjct: 124 VQSISGTGALRIAADFFARFLKGKTAYVPNPTWGNHNVIFNDAGIPVKSYGYYNPATCGL 183

Query: 215 DFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF 274
           +FE M  DI AAP GS ILLH CAHNPTG+DPT EQW+KI+++ +E+ H   FD AYQGF
Sbjct: 184 NFEAMTKDIAAAPEGSIILLHACAHNPTGVDPTAEQWKKISEICKERGHFVLFDFAYQGF 243

Query: 275 ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAV 334
           ASGS + DA++VR+F   G  + + QS++KN GLY ERIGA +++  +SD A        
Sbjct: 244 ASGSPEKDAAAVRMFVEDGHNIALCQSFAKNFGLYGERIGAFSILTETSDQA-------- 295

Query: 335 IQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS 394
           + V+SQLK L RPMYSNPPV+GAR+V  ++ +  L +EW++E++ MA RI N+R++L   
Sbjct: 296 LNVESQLKILIRPMYSNPPVYGARLVQAILKDKELTNEWRSEVKGMADRIINMREQLVKY 355

Query: 395 LSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEY 454
           L  K  S +DWS I  QIGMF FTGL   Q D + N++H+Y+T++GRIS+AG++    EY
Sbjct: 356 LK-KHGSTRDWSHITTQIGMFCFTGLTPEQVDRLANEYHIYLTRNGRISIAGINSTNVEY 414

Query: 455 LADAI 459
           LA A+
Sbjct: 415 LAKAM 419

Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P12344|AATM_BOVIN Aspartate aminotransferase, mitochondrial OS=Bos taurus GN=GOT2 PE=1 SV=2

 Score =  427 bits (1097), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/399 (51%), Positives = 274/399 (68%), Gaps = 10/399 (2%)

Query: 62  VTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE 121
           V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  V+KAE  +  +  +KE
Sbjct: 36  VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKE 95

Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK-V 180
           YLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR+ A+ ++R+F  ++ V
Sbjct: 96  YLPIAGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGASFLQRFFKFSRDV 155

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
            +  PTWGNH  IF DA +    YRYYDPKT G DF G I DI   P  S ILLH CAHN
Sbjct: 156 FLPKPTWGNHTPIFRDAGMQLQSYRYYDPKTCGFDFTGAIEDISKIPAQSVILLHACAHN 215

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTG+DP PEQW+++A V+++ N   FFD+AYQGFASG  + DA +VR F  +G+ + + Q
Sbjct: 216 PTGVDPRPEQWKEMATVVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQ 275

Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV 360
           SY+KN+GLY ER+GA  VVC  ++ A R        V+SQLK L RPMYSNPP++GARI 
Sbjct: 276 SYAKNMGLYGERVGAFTVVCKDAEEAKR--------VESQLKILIRPMYSNPPINGARIA 327

Query: 361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL 420
           + ++ +P L  +W  E++ MA RI ++R +L  +L  K+ S  +W  I+ QIGMF +TGL
Sbjct: 328 STILTSPDLRKQWLHEVKGMADRIISMRTQLVSNLK-KEGSSHNWQHIIDQIGMFCYTGL 386

Query: 421 NKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
              Q + +T ++ +YMTKDGRIS+AG++     YLA AI
Sbjct: 387 KPEQVERLTKEFSIYMTKDGRISVAGVTSGNVAYLAHAI 425

Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	467
224143258	466	predicted protein [Populus trichocarpa]	0.982	0.984	0.883	0.0
224092554	466	predicted protein [Populus trichocarpa]	0.982	0.984	0.877	0.0
255548798	464	aspartate aminotransferase, putative [Ri	0.978	0.984	0.852	0.0
225430398	462	PREDICTED: aspartate aminotransferase, c	0.974	0.984	0.845	0.0
147766607	462	hypothetical protein VITISV_000267 [Viti	0.974	0.984	0.843	0.0
81074221	462	aspartate aminotransferase-like [Solanum	0.982	0.993	0.834	0.0
449441882	464	PREDICTED: aspartate aminotransferase, c	0.980	0.987	0.845	0.0
297798764	453	hypothetical protein ARALYDRAFT_491537 [	0.970	1.0	0.841	0.0
15236129	453	aspartate aminotransferase [Arabidopsis	0.970	1.0	0.832	0.0
531555	453	aspartate aminotransferase [Arabidopsis	0.970	1.0	0.832	0.0

>gi|224143258|ref|XP_002324896.1| predicted protein [Populus trichocarpa] gi|222866330|gb|EEF03461.1| predicted protein [Populus trichocarpa]

 Score =  865 bits (2235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/474 (88%), Positives = 441/474 (93%), Gaps = 15/474 (3%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTA-------GFIKTKSFGRVSMVAA 53
           MASTM+S+ASATPSASLS+ E LKGK++LGS++ ST          IK KSFGR+SM  A
Sbjct: 1   MASTMISLASATPSASLSVQETLKGKMRLGSSSVSTLFNKEKGNPSIKKKSFGRISMTVA 60

Query: 54  VNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLM 113
           VNVSRFEG+ MAPPDPILGVSEAF+AD D KKLNLGVGAYRTEELQPYVLDVVKKAENLM
Sbjct: 61  VNVSRFEGIAMAPPDPILGVSEAFRADIDVKKLNLGVGAYRTEELQPYVLDVVKKAENLM 120

Query: 114 LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER 173
           LERGENKEYL IEGLAAFNKVTAELLFGADN V+++QRVATVQGLSGTGSLRLAAALIER
Sbjct: 121 LERGENKEYLAIEGLAAFNKVTAELLFGADNQVIEQQRVATVQGLSGTGSLRLAAALIER 180

Query: 174 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL 233
           YFPGA+VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI+DIKAAP GSF+L
Sbjct: 181 YFPGAQVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMISDIKAAPEGSFVL 240

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293
           LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DASSVRLFA RG
Sbjct: 241 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADASSVRLFAARG 300

Query: 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPP 353
           MELLVAQSYSKNLGLYAERIGA+NVVCSS+D AAR        VKSQLKR+ARPMYSNPP
Sbjct: 301 MELLVAQSYSKNLGLYAERIGAINVVCSSADAAAR--------VKSQLKRIARPMYSNPP 352

Query: 354 VHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIG 413
           VHGARIVANVVG+PALF+EWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL+QIG
Sbjct: 353 VHGARIVANVVGDPALFNEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILKQIG 412

Query: 414 MFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 467
           MFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Sbjct: 413 MFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 466

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092554|ref|XP_002309659.1| predicted protein [Populus trichocarpa] gi|222855635|gb|EEE93182.1| predicted protein [Populus trichocarpa]

 Score =  863 bits (2229), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/474 (87%), Positives = 438/474 (92%), Gaps = 15/474 (3%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTA-------GFIKTKSFGRVSMVAA 53
           MASTMLS+AS TPSASLSM E LKGK +LGS + ST         FIK KSFGR+SM  A
Sbjct: 1   MASTMLSLASTTPSASLSMQEILKGKARLGSGSVSTLFNKEKGNPFIKAKSFGRISMTVA 60

Query: 54  VNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLM 113
           VNVSRFEG+ MAPPDPILGVSEAF+ADTD KKLNLGVGAYRTEELQPYVLDVVKKAENLM
Sbjct: 61  VNVSRFEGIAMAPPDPILGVSEAFRADTDVKKLNLGVGAYRTEELQPYVLDVVKKAENLM 120

Query: 114 LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER 173
           LERGENKEYLPIEGLAAFNKVTAELLFGADN V+K+QRVATVQGLSGTGSLRLAAALIER
Sbjct: 121 LERGENKEYLPIEGLAAFNKVTAELLFGADNPVIKQQRVATVQGLSGTGSLRLAAALIER 180

Query: 174 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL 233
           YFPGA+VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI+DIKAAP GSF+L
Sbjct: 181 YFPGAQVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMISDIKAAPEGSFVL 240

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293
           LHGCAHNPTGIDPTPEQWEKIADVIQEKNH+PFFDVAYQGFASGSLD DASSVRLFA RG
Sbjct: 241 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHVPFFDVAYQGFASGSLDADASSVRLFAARG 300

Query: 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPP 353
           MELL+AQSYSKNLGLYAERIGA+NVVCSS+D AAR        VKSQLKR+ARPMYSNPP
Sbjct: 301 MELLIAQSYSKNLGLYAERIGAINVVCSSADAAAR--------VKSQLKRIARPMYSNPP 352

Query: 354 VHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIG 413
           VHGARIVANVVG+P LF+EWK EMEM+AGRIKNVRQKLFDSLSAKDKSGKDWSFIL+QIG
Sbjct: 353 VHGARIVANVVGDPILFNEWKEEMEMLAGRIKNVRQKLFDSLSAKDKSGKDWSFILKQIG 412

Query: 414 MFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 467
           MFSFTGLNK QS+NMTNKWHVYMT+DGRISLAGLSLAKCEYLADAIIDSYHNVS
Sbjct: 413 MFSFTGLNKTQSENMTNKWHVYMTRDGRISLAGLSLAKCEYLADAIIDSYHNVS 466

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548798|ref|XP_002515455.1| aspartate aminotransferase, putative [Ricinus communis] gi|223545399|gb|EEF46904.1| aspartate aminotransferase, putative [Ricinus communis]

 Score =  829 bits (2142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/474 (85%), Positives = 429/474 (90%), Gaps = 17/474 (3%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGS-------TTNSTAGFIKTKSFGRVSMVAA 53
           MAS+M S+A A  S S SMH+ LK KV+LGS       T +    F+KTKS GR+SM AA
Sbjct: 1   MASSMFSLAGA--SLSPSMHDTLKEKVRLGSGSIGTWFTKDKVHSFMKTKSSGRISMTAA 58

Query: 54  VNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLM 113
           VN+SRFEG+TMA PDPILGVSEAF+AD D KKLNLGVGAYRTEEL PYVLDVVKKAENLM
Sbjct: 59  VNISRFEGITMALPDPILGVSEAFRADNDAKKLNLGVGAYRTEELHPYVLDVVKKAENLM 118

Query: 114 LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER 173
           LERGENKEYLPIEGLAAFNKVTAELLFGADN V+ +QRVATVQGLSGTGSLRLAAALIER
Sbjct: 119 LERGENKEYLPIEGLAAFNKVTAELLFGADNPVINQQRVATVQGLSGTGSLRLAAALIER 178

Query: 174 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL 233
           YF GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP+TVGLDFEGMI+DIKAAP GSF+L
Sbjct: 179 YFLGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPRTVGLDFEGMISDIKAAPEGSFVL 238

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293
           LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLFA RG
Sbjct: 239 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADAASVRLFAARG 298

Query: 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPP 353
           MELLVAQSYSKNLGLYAERIGA+NVVCSS+D AAR        VKSQLKR+ARPMYSNPP
Sbjct: 299 MELLVAQSYSKNLGLYAERIGALNVVCSSADAAAR--------VKSQLKRIARPMYSNPP 350

Query: 354 VHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIG 413
           VHGARIVANVVG+ +LF+EWK EMEMMAGRIK VRQKL+DSLSAKDKSGKDWSFIL+QIG
Sbjct: 351 VHGARIVANVVGDQSLFNEWKDEMEMMAGRIKGVRQKLYDSLSAKDKSGKDWSFILKQIG 410

Query: 414 MFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 467
           MFS+TGLNK QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Sbjct: 411 MFSYTGLNKTQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 464

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430398|ref|XP_002285385.1| PREDICTED: aspartate aminotransferase, chloroplastic [Vitis vinifera] gi|296082090|emb|CBI21095.3| unnamed protein product [Vitis vinifera]

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/474 (84%), Positives = 429/474 (90%), Gaps = 19/474 (4%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNST-------AGFIKTKSFGRVSMVAA 53
           MASTMLS+ SA    +L + E  KGK+ LGS+  S+         F+KTKSFGR++M  A
Sbjct: 1   MASTMLSLVSA----ALPLQENHKGKMNLGSSDCSSFLRKEKRNPFMKTKSFGRINMAIA 56

Query: 54  VNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLM 113
           VN SRFEGVTMAPPDPILGVSEAF+AD  E KLNLGVGAYRTEELQPYVL+VVKKAENLM
Sbjct: 57  VNTSRFEGVTMAPPDPILGVSEAFRADNSEMKLNLGVGAYRTEELQPYVLNVVKKAENLM 116

Query: 114 LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER 173
           LERGENKEYLPIEGLAAFNKVTAELLFGA N V+++QRVATVQGLSGTGSLRLAAALIER
Sbjct: 117 LERGENKEYLPIEGLAAFNKVTAELLFGAGNPVIEQQRVATVQGLSGTGSLRLAAALIER 176

Query: 174 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL 233
           YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF+GMI+DIKAAP GSF+L
Sbjct: 177 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFDGMISDIKAAPEGSFVL 236

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293
           LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DASSVRLFA RG
Sbjct: 237 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADASSVRLFAARG 296

Query: 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPP 353
           MELLVAQSYSKNLGLYAERIGA+NVVCSS+D AAR        VKSQLKR+ARPMYSNPP
Sbjct: 297 MELLVAQSYSKNLGLYAERIGAINVVCSSADAAAR--------VKSQLKRIARPMYSNPP 348

Query: 354 VHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIG 413
           +HGARIVANVVG+PALF+EWK EME+MAGRIKNVRQKLFDSLSAKDK GKDWSFIL+QIG
Sbjct: 349 IHGARIVANVVGDPALFNEWKEEMELMAGRIKNVRQKLFDSLSAKDKCGKDWSFILKQIG 408

Query: 414 MFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 467
           MFSFTGL+K QS+NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDS+H VS
Sbjct: 409 MFSFTGLSKVQSENMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSFHCVS 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766607|emb|CAN76227.1| hypothetical protein VITISV_000267 [Vitis vinifera]

 Score =  822 bits (2122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/474 (84%), Positives = 429/474 (90%), Gaps = 19/474 (4%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNST-------AGFIKTKSFGRVSMVAA 53
           MASTMLS+ SA    +L + E  KGK+ LGS+  S+         F+KTKSFGR++M  A
Sbjct: 1   MASTMLSLVSA----ALPLQENHKGKMNLGSSDCSSFLRKEKRNPFMKTKSFGRINMAIA 56

Query: 54  VNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLM 113
           VN SRFEGVTMAPPDPILGVSEAF+AD  E KLNLGVGAYRTEELQPYVL+VVKKAENLM
Sbjct: 57  VNTSRFEGVTMAPPDPILGVSEAFRADNSEMKLNLGVGAYRTEELQPYVLNVVKKAENLM 116

Query: 114 LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER 173
           L+RGENKEYLPIEGLAAFNKVTAELLFGA N V+++QRVATVQGLSGTGSLRLAAALIER
Sbjct: 117 LKRGENKEYLPIEGLAAFNKVTAELLFGAGNPVIEQQRVATVQGLSGTGSLRLAAALIER 176

Query: 174 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL 233
           YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF+GMI+DIKAAP GSF+L
Sbjct: 177 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFDGMISDIKAAPEGSFVL 236

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293
           LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DASSVRLFA RG
Sbjct: 237 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADASSVRLFAARG 296

Query: 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPP 353
           MELLVAQSYSKNLGLYAERIGA+NVVCSS+D AAR        VKSQLKR+ARPMYSNPP
Sbjct: 297 MELLVAQSYSKNLGLYAERIGAINVVCSSADAAAR--------VKSQLKRIARPMYSNPP 348

Query: 354 VHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIG 413
           +HGARIVANVVG+PALF+EWK EME+MAGRIKNVRQKLFDSLSAKDK GKDWSFIL+QIG
Sbjct: 349 IHGARIVANVVGDPALFNEWKEEMELMAGRIKNVRQKLFDSLSAKDKCGKDWSFILKQIG 408

Query: 414 MFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 467
           MFSFTGL+K QS+NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDS+H VS
Sbjct: 409 MFSFTGLSKVQSENMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSFHCVS 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|81074221|gb|ABB55364.1| aspartate aminotransferase-like [Solanum tuberosum]

 Score =  820 bits (2117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/470 (83%), Positives = 426/470 (90%), Gaps = 11/470 (2%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNST---AGFIKTKSFGRVSMVAAVNVS 57
           MASTM S+AS TPSAS+S+ + LK K+KLG+++        F+K KS G+ +M  AVNVS
Sbjct: 1   MASTMFSLASVTPSASISLQDNLKPKLKLGTSSQRAFPRKDFMKAKSNGQTTMAVAVNVS 60

Query: 58  RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG 117
           RFEG+TMAPPDPILGVSEAFKADT+E KLNLGVGAYRTE+LQPYVL+VVKKAENL+LERG
Sbjct: 61  RFEGITMAPPDPILGVSEAFKADTNELKLNLGVGAYRTEDLQPYVLNVVKKAENLILERG 120

Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
           ENKEYLPIEGLAAFNKVTAELLFG DN VL++QRVAT+QGLSGTGSLR+AAALIERYFPG
Sbjct: 121 ENKEYLPIEGLAAFNKVTAELLFGKDNPVLQQQRVATIQGLSGTGSLRIAAALIERYFPG 180

Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
           +K+LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF GMI DIKAAP GSFILLHGC
Sbjct: 181 SKILISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFAGMIEDIKAAPEGSFILLHGC 240

Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
           AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DASSVR+FA RGMELL
Sbjct: 241 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDEDASSVRMFAARGMELL 300

Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGA 357
           VAQSYSKNLGLY ERIGA+NV+CSS+  A R        VKSQLKRLARPMYSNPP+HGA
Sbjct: 301 VAQSYSKNLGLYGERIGAINVLCSSAYAATR--------VKSQLKRLARPMYSNPPIHGA 352

Query: 358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF 417
           +IVANVVG P LF EWK EMEMMAGRIK+VRQKL+DSLSAKDKSGKDWSFIL+QIGMFSF
Sbjct: 353 KIVANVVGTPELFSEWKEEMEMMAGRIKSVRQKLYDSLSAKDKSGKDWSFILKQIGMFSF 412

Query: 418 TGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 467
           TGLNKAQS+NM +KWHVYMTKDGRISLAGLS AKCEYLADAIIDSY+NVS
Sbjct: 413 TGLNKAQSENMADKWHVYMTKDGRISLAGLSAAKCEYLADAIIDSYYNVS 462

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441882|ref|XP_004138711.1| PREDICTED: aspartate aminotransferase, chloroplastic-like [Cucumis sativus] gi|449499236|ref|XP_004160763.1| PREDICTED: aspartate aminotransferase, chloroplastic-like [Cucumis sativus]

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/471 (84%), Positives = 429/471 (91%), Gaps = 13/471 (2%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTT-----NSTAGFIKTKSFGRVSMVAAVN 55
           MAS++L +AS +PSAS S  +  K K+ LGS++     +    F K KSF R+SMVA+VN
Sbjct: 1   MASSVLPLASVSPSASRSSFDNNKKKLNLGSSSLTFDLDKNHPFAKAKSFSRISMVASVN 60

Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           VSRFEG+TMAPPDPILGVSEAFKADT   KLNLGVGAYRTEELQPYVLDVVKK E LMLE
Sbjct: 61  VSRFEGITMAPPDPILGVSEAFKADTHGNKLNLGVGAYRTEELQPYVLDVVKKVEALMLE 120

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
           RG+NKEYLPIEGLAAFNK TAELLFGADN V+K+QRVAT+QGLSGTGSLRLAAALIERYF
Sbjct: 121 RGDNKEYLPIEGLAAFNKATAELLFGADNPVIKQQRVATIQGLSGTGSLRLAAALIERYF 180

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
           PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI+DIKAAP GSF+LLH
Sbjct: 181 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMISDIKAAPEGSFVLLH 240

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DASSVRLFA RG+E
Sbjct: 241 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADASSVRLFAARGLE 300

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
           LLVAQSYSKNLGLYAERIGA+NVVC+S+D        A I+VKSQLKRLARPMYSNPPVH
Sbjct: 301 LLVAQSYSKNLGLYAERIGAINVVCTSAD--------AAIRVKSQLKRLARPMYSNPPVH 352

Query: 356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
           GARIVAN+VG+PALF+EWKAEMEMMAGRIKNVRQKL+DSL AKDKSGKDWSFIL+QIGMF
Sbjct: 353 GARIVANIVGDPALFNEWKAEMEMMAGRIKNVRQKLYDSLCAKDKSGKDWSFILKQIGMF 412

Query: 416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNV 466
           SFTGL+K QSDNMT+KWHVYMTKDGRISLAGLSLAKCEYLADAIIDS+HNV
Sbjct: 413 SFTGLSKVQSDNMTDKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSFHNV 463

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798764|ref|XP_002867266.1| hypothetical protein ARALYDRAFT_491537 [Arabidopsis lyrata subsp. lyrata] gi|297313102|gb|EFH43525.1| hypothetical protein ARALYDRAFT_491537 [Arabidopsis lyrata subsp. lyrata]

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/467 (84%), Positives = 420/467 (89%), Gaps = 14/467 (2%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFE 60
           MAS+MLS+ S TP   L   E  K K+KLG  T+S+  F+K KSF RV+M  AV  SRFE
Sbjct: 1   MASSMLSLGS-TP---LLPREINKDKLKLG--TSSSNPFLKAKSFSRVTMTVAVKPSRFE 54

Query: 61  GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK 120
           G+TMAPPDPILGVSEAFKADT+E KLNLGVGAYRTEELQPYVL+VVKKAENLMLERG+NK
Sbjct: 55  GITMAPPDPILGVSEAFKADTNEMKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGDNK 114

Query: 121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180
           EYLPIEGLAAFNK TAELLFGA + V+KEQRVAT+QGLSGTGSLRLAAALIERYFPGAKV
Sbjct: 115 EYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYFPGAKV 174

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
           +ISSPTWGNHKNIFNDA+VPWSEYRYYDPKT+GLDFEGMIADIK AP GSFILLHGCAHN
Sbjct: 175 VISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLHGCAHN 234

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTGIDPTPEQW KIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLFA RGME  VAQ
Sbjct: 235 PTGIDPTPEQWVKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFAERGMEFFVAQ 294

Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV 360
           SYSKNLGLYAERIGA+NVVCSS+D A R        VKSQLKR+ARPMYSNPPVHGARIV
Sbjct: 295 SYSKNLGLYAERIGAINVVCSSADAATR--------VKSQLKRIARPMYSNPPVHGARIV 346

Query: 361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL 420
           ANVVG+  +F EWKAEMEMMAGRIK VRQKL+DSL +KDKSGKDWSFIL+QIGMFSFTGL
Sbjct: 347 ANVVGDATMFSEWKAEMEMMAGRIKTVRQKLYDSLVSKDKSGKDWSFILKQIGMFSFTGL 406

Query: 421 NKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 467
           NKAQSDNMT+KWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Sbjct: 407 NKAQSDNMTDKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 453

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236129|ref|NP_194927.1| aspartate aminotransferase [Arabidopsis thaliana] gi|30689228|ref|NP_849483.1| aspartate aminotransferase [Arabidopsis thaliana] gi|20532373|sp|P46248.2|AAT5_ARATH RecName: Full=Aspartate aminotransferase, chloroplastic; AltName: Full=Transaminase A; Flags: Precursor gi|2827636|emb|CAA16590.1| aspartate aminotransferase [Arabidopsis thaliana] gi|7270103|emb|CAB79917.1| aspartate aminotransferase [Arabidopsis thaliana] gi|15451160|gb|AAK96851.1| aspartate aminotransferase [Arabidopsis thaliana] gi|20148355|gb|AAM10068.1| aspartate aminotransferase [Arabidopsis thaliana] gi|222423613|dbj|BAH19775.1| AT4G31990 [Arabidopsis thaliana] gi|332660587|gb|AEE85987.1| aspartate aminotransferase [Arabidopsis thaliana] gi|332660588|gb|AEE85988.1| aspartate aminotransferase [Arabidopsis thaliana]

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/467 (83%), Positives = 417/467 (89%), Gaps = 14/467 (2%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFE 60
           MAS MLS+ S     SL   E  K K+KLG  T+++  F+K KSF RV+M  AV  SRFE
Sbjct: 1   MASLMLSLGST----SLLPREINKDKLKLG--TSASNPFLKAKSFSRVTMTVAVKPSRFE 54

Query: 61  GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK 120
           G+TMAPPDPILGVSEAFKADT+  KLNLGVGAYRTEELQPYVL+VVKKAENLMLERG+NK
Sbjct: 55  GITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGDNK 114

Query: 121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180
           EYLPIEGLAAFNK TAELLFGA + V+KEQRVAT+QGLSGTGSLRLAAALIERYFPGAKV
Sbjct: 115 EYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYFPGAKV 174

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
           +ISSPTWGNHKNIFNDA+VPWSEYRYYDPKT+GLDFEGMIADIK AP GSFILLHGCAHN
Sbjct: 175 VISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLHGCAHN 234

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTGIDPTPEQW KIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLFA RGME  VAQ
Sbjct: 235 PTGIDPTPEQWVKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFAERGMEFFVAQ 294

Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV 360
           SYSKNLGLYAERIGA+NVVCSS+D A R        VKSQLKR+ARPMYSNPPVHGARIV
Sbjct: 295 SYSKNLGLYAERIGAINVVCSSADAATR--------VKSQLKRIARPMYSNPPVHGARIV 346

Query: 361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL 420
           ANVVG+  +F EWKAEMEMMAGRIK VRQ+L+DSL +KDKSGKDWSFIL+QIGMFSFTGL
Sbjct: 347 ANVVGDVTMFSEWKAEMEMMAGRIKTVRQELYDSLVSKDKSGKDWSFILKQIGMFSFTGL 406

Query: 421 NKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 467
           NKAQSDNMT+KWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Sbjct: 407 NKAQSDNMTDKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 453

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|531555|emb|CAA56932.1| aspartate aminotransferase [Arabidopsis thaliana] gi|1017411|emb|CAA62972.1| aspartate aminotransferase [Arabidopsis thaliana]

 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/467 (83%), Positives = 416/467 (89%), Gaps = 14/467 (2%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFE 60
           MAS MLS+ S     SL   E  K  VKLG  T+++  F+K KSF RV+M  AV  SRFE
Sbjct: 1   MASLMLSLGST----SLLPREINKDNVKLG--TSASNPFLKAKSFSRVTMTVAVKPSRFE 54

Query: 61  GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK 120
           G+TMAPPDPILGVSEAFKADT+  KLNLGVGAYRTEELQPYVL+VVKKAENLMLERG+NK
Sbjct: 55  GITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGDNK 114

Query: 121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180
           EYLPIEGLAAFNK TAELLFGA + V+KEQRVAT+QGLSGTGSLRLAAALIERYFPGAKV
Sbjct: 115 EYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYFPGAKV 174

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
           +ISSPTWGNHKNIFNDA+VPWSEYRYYDPKT+GLDFEGMIADIK AP GSFILLHGCAHN
Sbjct: 175 VISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLHGCAHN 234

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTGIDPTPEQW KIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLFA RGME  VAQ
Sbjct: 235 PTGIDPTPEQWVKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFAERGMEFFVAQ 294

Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV 360
           SYSKNLGLYAERIGA+NVVCSS+D A R        VKSQLKR+ARPMYSNPPVHGARIV
Sbjct: 295 SYSKNLGLYAERIGAINVVCSSADAATR--------VKSQLKRIARPMYSNPPVHGARIV 346

Query: 361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL 420
           ANVVG+  +F EWKAEMEMMAGRIK VRQ+L+DSL +KDKSGKDWSFIL+QIGMFSFTGL
Sbjct: 347 ANVVGDVTMFSEWKAEMEMMAGRIKTVRQELYDSLVSKDKSGKDWSFILKQIGMFSFTGL 406

Query: 421 NKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 467
           NKAQSDNMT+KWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Sbjct: 407 NKAQSDNMTDKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 453

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	467
TAIR|locus:2116682	462	ASP5 "aspartate aminotransfera	0.965	0.976	0.832	5.6e-203
UNIPROTKB|P26563	454	P26563 "Aspartate aminotransfe	0.970	0.997	0.817	1.5e-200
UNIPROTKB|P37833	407	LOC_Os01g55540 "Aspartate amin	0.843	0.968	0.549	1.8e-117
UNIPROTKB|P28734	405	P28734 "Aspartate aminotransfe	0.843	0.972	0.559	7.9e-117
TAIR|locus:2180826	405	ASP2 "aspartate aminotransfera	0.843	0.972	0.534	2.4e-115
TAIR|locus:2144226	449	ASP3 "aspartate aminotransfera	0.843	0.877	0.534	6.6e-113
DICTYBASE|DDB_G0282493	438	aatB "aspartate transaminase"	0.839	0.894	0.545	4.2e-111
DICTYBASE|DDB_G0268664	426	aatA "aspartate transaminase"	0.888	0.974	0.496	7e-109
UNIPROTKB|P12344	430	GOT2 "Aspartate aminotransfera	0.867	0.941	0.506	4e-106
MGI|MGI:95792	430	Got2 "glutamate oxaloacetate t	0.867	0.941	0.510	4e-106

TAIR|locus:2116682 ASP5 "aspartate aminotransferase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1964 (696.4 bits), Expect = 5.6e-203, P = 5.6e-203
 Identities = 387/465 (83%), Positives = 415/465 (89%)

Query:     1 MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFE 60
             MAS MLS+ S     SL   E  K K+KLG  T+++  F+K KSF RV+M  AV  SRFE
Sbjct:     1 MASLMLSLGST----SLLPREINKDKLKLG--TSASNPFLKAKSFSRVTMTVAVKPSRFE 54

Query:    61 GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK 120
             G+TMAPPDPILGVSEAFKADT+  KLNLGVGAYRTEELQPYVL+VVKKAENLMLERG+NK
Sbjct:    55 GITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGDNK 114

Query:   121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180
             EYLPIEGLAAFNK TAELLFGA + V+KEQRVAT+QGLSGTGSLRLAAALIERYFPGAKV
Sbjct:   115 EYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYFPGAKV 174

Query:   181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
             +ISSPTWGNHKNIFNDA+VPWSEYRYYDPKT+GLDFEGMIADIK AP GSFILLHGCAHN
Sbjct:   175 VISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLHGCAHN 234

Query:   241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
             PTGIDPTPEQW KIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLFA RGME  VAQ
Sbjct:   235 PTGIDPTPEQWVKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFAERGMEFFVAQ 294

Query:   301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV 360
             SYSKNLGLYAERIGA+NVVCSS+D A R        VKSQLKR+ARPMYSNPPVHGARIV
Sbjct:   295 SYSKNLGLYAERIGAINVVCSSADAATR--------VKSQLKRIARPMYSNPPVHGARIV 346

Query:   361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL 420
             ANVVG+  +F EWKAEMEMMAGRIK VRQ+L+DSL +KDKSGKDWSFIL+QIGMFSFTGL
Sbjct:   347 ANVVGDVTMFSEWKAEMEMMAGRIKTVRQELYDSLVSKDKSGKDWSFILKQIGMFSFTGL 406

Query:   421 NKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHN 465
             NKAQSDNMT+KWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHN
Sbjct:   407 NKAQSDNMTDKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHN 451

GO:0003824 "catalytic activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0033853 "aspartate-prephenate aminotransferase activity" evidence=IDA

GO:0033854 "glutamate-prephenate aminotransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|P26563 P26563 "Aspartate aminotransferase P2, mitochondrial" [Lupinus angustifolius (taxid:3871)]

 Score = 1941 (688.3 bits), Expect = 1.5e-200, P = 1.5e-200
 Identities = 381/466 (81%), Positives = 413/466 (88%)

Query:     3 STMLSIASATPSASLSMHEKLK-GKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEG 61
             S++LSI    PS SL  ++KLK G   L  +   +  F   KS  R+SMVAAVNVSRFEG
Sbjct:     1 SSLLSI----PSLSLQYNDKLKVGGNSLRFSKEQSNTFSNAKSSCRISMVAAVNVSRFEG 56

Query:    62 VTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE 121
             + MAPPDPILGVSEAF+ADT + KLNLGVGAYRTEELQPYVL VV KAENLMLERG+NKE
Sbjct:    57 IPMAPPDPILGVSEAFRADTSDAKLNLGVGAYRTEELQPYVLKVVNKAENLMLERGQNKE 116

Query:   122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL 181
             YL IEGLAAFNK TAELL GADN  +K+QRVATVQGLSGTGSLRL AALIERYFPGAKVL
Sbjct:   117 YLAIEGLAAFNKATAELLLGADNPAIKQQRVATVQGLSGTGSLRLGAALIERYFPGAKVL 176

Query:   182 ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241
             IS+PTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI DIKAAP G+F+LLHGCAHNP
Sbjct:   177 ISAPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIEDIKAAPEGTFVLLHGCAHNP 236

Query:   242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS 301
             TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLF  RG+E+LVAQS
Sbjct:   237 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFVARGLEVLVAQS 296

Query:   302 YSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVA 361
             YSKNLGLYAERIGA+NV+ SS + AAR        VKSQLKR+ARPMYSNPPVHGARIVA
Sbjct:   297 YSKNLGLYAERIGAINVISSSPESAAR--------VKSQLKRIARPMYSNPPVHGARIVA 348

Query:   362 NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN 421
             ++VGNPALFDEWK EMEMMAGRIKNVRQ+L+DS+S+KDKSGKDWSFIL+QIGMFS+TGLN
Sbjct:   349 DIVGNPALFDEWKVEMEMMAGRIKNVRQQLYDSISSKDKSGKDWSFILKQIGMFSYTGLN 408

Query:   422 KAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 467
             K QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDS+H VS
Sbjct:   409 KNQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSFHYVS 454

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

UNIPROTKB|P37833 LOC_Os01g55540 "Aspartate aminotransferase, cytoplasmic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
 Identities = 222/404 (54%), Positives = 295/404 (73%)

Query:    57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
             S F G+  AP DPILGV+ A+  D    K+NLGVGAYRTEE +P VL+VV++AE +++  
Sbjct:     5 SVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINN 64

Query:   117 GEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
                 KEYLPI GLA FNK++A+L+FGAD+  ++E RVATVQ LSGTGSLR+    + R++
Sbjct:    65 PSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 124

Query:   176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
                 + I  PTWGNH  +F  A +    YRYYDP T GLDF+G++ D+ +AP G+ +LLH
Sbjct:   125 HERTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLLH 184

Query:   236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
              CAHNPTG+DPT +QWE+I  +++ K  +PFFD AYQGFASGSLD DA SVR+F   G E
Sbjct:   185 ACAHNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVADGGE 244

Query:   296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
             LL+AQSY+KN+GLY ER+GA+++VC S+D+A R        V+SQLK + RPMYSNPP+H
Sbjct:   245 LLMAQSYAKNMGLYGERVGALSIVCGSADVAVR--------VESQLKLVIRPMYSNPPIH 296

Query:   356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
             GA IVA ++ + A+F+EW  E++ MA RI ++RQ+LFD+L  ++  G DWS I++QIGMF
Sbjct:   297 GASIVATILKDSAMFNEWTVELKGMADRIISMRQQLFDALKTRETPG-DWSHIIKQIGMF 355

Query:   416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
             +FTGLN  Q   M  ++H+YMT DGRIS+AGLS     +LADAI
Sbjct:   356 TFTGLNSDQVAFMRQEYHIYMTSDGRISMAGLSGRTIPHLADAI 399

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0006522 "alanine metabolic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

GO:0006807 "nitrogen compound metabolic process" evidence=ISS

UNIPROTKB|P28734 P28734 "Aspartate aminotransferase, cytoplasmic" [Daucus carota (taxid:4039)]

 Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
 Identities = 226/404 (55%), Positives = 298/404 (73%)

Query:    57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-E 115
             S F  V  AP DPILGV+ A+  D    KLNLGVGAYRTEE +P VL+VVKKAE +++ +
Sbjct:     3 SVFANVVRAPEDPILGVTVAYHKDQSPNKLNLGVGAYRTEEGKPLVLNVVKKAEQMLVND 62

Query:   116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
             +   KEYLPI GLA FNK++A+L+FGAD+  ++E RVATVQ LSGTGSLR+    + R++
Sbjct:    63 QSRVKEYLPIVGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 122

Query:   176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
                 V I  PTWGNH  IF  A +    YRYY+P+T GLDFEGM+ D+ +AP G+ +LLH
Sbjct:   123 HEHTVYIPQPTWGNHPKIFTLAGLSVKTYRYYNPETRGLDFEGMLEDLGSAPLGAIVLLH 182

Query:   236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
              CAHNPTG+DPT EQWE+I  +++ K+ +PFFD AYQGFASGSLD DA SVR+F   G E
Sbjct:   183 ACAHNPTGVDPTIEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDADAQSVRIFVADGGE 242

Query:   296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
              L AQSY+KN+GLY ER+GA+++VC ++D+A++        V+SQLK + RPMYS+PP+H
Sbjct:   243 CLAAQSYAKNMGLYGERVGALSIVCKTADVASK--------VESQLKLVIRPMYSSPPLH 294

Query:   356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
             GA IVA ++ +  L++EW  E++ MA RI ++RQ+LF++L AK   G DWS I++QIGMF
Sbjct:   295 GASIVAAILKDGDLYNEWTLELKAMADRIISMRQELFNALQAKGTPG-DWSHIVKQIGMF 353

Query:   416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
             +FTGLN  Q   MTN++H+Y+T DGRIS+AGLS     +LADAI
Sbjct:   354 TFTGLNSEQVTFMTNEYHIYLTSDGRISMAGLSSRTVPHLADAI 397

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

TAIR|locus:2180826 ASP2 "aspartate aminotransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
 Identities = 216/404 (53%), Positives = 296/404 (73%)

Query:    57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAEN-LMLE 115
             S F  V  AP DPILGV+ A+  D    K+NLGVGAYRTEE +P VLDVV+KAE  L+ +
Sbjct:     3 SVFSNVARAPEDPILGVTVAYNNDPSPVKINLGVGAYRTEEGKPLVLDVVRKAEQQLVND 62

Query:   116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
                 KEY+PI G++ FNK++A+L+ GAD+  + E RV TVQ LSGTGSLR+ A  ++ ++
Sbjct:    63 PSRVKEYIPIVGISDFNKLSAKLILGADSPAITESRVTTVQCLSGTGSLRVGAEFLKTHY 122

Query:   176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               + + I  PTWGNH  +FN A +    +RYYDP T GLDF+G++ D+ AAP G+ +LLH
Sbjct:   123 HQSVIYIPKPTWGNHPKVFNLAGLSVEYFRYYDPATRGLDFKGLLEDLGAAPSGAIVLLH 182

Query:   236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
              CAHNPTG+DPT EQWE+I  +++ K+ +PFFD AYQGFASGSLD DA SVR F   G E
Sbjct:   183 ACAHNPTGVDPTSEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDTDAQSVRTFVADGGE 242

Query:   296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
              L+AQSY+KN+GLY ER+GA+++VC S+D+A++        V+SQ+K + RPMYS+PP+H
Sbjct:   243 CLIAQSYAKNMGLYGERVGALSIVCKSADVASK--------VESQVKLVVRPMYSSPPIH 294

Query:   356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
             GA IVA ++ +  +++ W  E++ MA RIK++RQ+LF+++ A+   G DWS I++QIGMF
Sbjct:   295 GASIVATILKSSDMYNNWTIELKEMADRIKSMRQQLFEAIQARGTPG-DWSHIIKQIGMF 353

Query:   416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
             +FTGLNK Q + MT ++H+YMT DGRIS+AGLS     +LADA+
Sbjct:   354 TFTGLNKEQVEFMTKEFHIYMTSDGRISMAGLSSKTVPHLADAM 397

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

TAIR|locus:2144226 ASP3 "aspartate aminotransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1114 (397.2 bits), Expect = 6.6e-113, P = 6.6e-113
 Identities = 216/404 (53%), Positives = 290/404 (71%)

Query:    57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-E 115
             S F  +  AP DPILGV+ A+  D    KLNLGVGAYRTEE +P VL+VV+KAE  ++ +
Sbjct:    47 SVFSHLVQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQQLIND 106

Query:   116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
             R   KEYLPI GL  FNK++A+L+ GAD+  ++E R+ TV+ LSGTGSLR+    + +++
Sbjct:   107 RTRIKEYLPIVGLVEFNKLSAKLILGADSPAIRENRITTVECLSGTGSLRVGGEFLAKHY 166

Query:   176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
                 + I+ PTWGNH  IF  A +    YRYYDP T GL+F+G++ D+ AA  GS +LLH
Sbjct:   167 HQKTIYITQPTWGNHPKIFTLAGLTVKTYRYYDPATRGLNFQGLLEDLGAAAPGSIVLLH 226

Query:   236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
              CAHNPTG+DPT +QWE+I  +++ K  +PFFD AYQGFASGSLD DA  +R+F   G E
Sbjct:   227 ACAHNPTGVDPTIQQWEQIRKLMRSKGLMPFFDSAYQGFASGSLDTDAKPIRMFVADGGE 286

Query:   296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
              LVAQSY+KN+GLY ER+GA+++VC S+D+A R        V+SQLK + RPMYS+PP+H
Sbjct:   287 CLVAQSYAKNMGLYGERVGALSIVCKSADVAGR--------VESQLKLVIRPMYSSPPIH 338

Query:   356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
             GA IVA ++ +  LF+EW  E++ MA RI ++R++LF++L  +   G DWS I++QIGMF
Sbjct:   339 GASIVAVILRDKNLFNEWTLELKAMADRIISMRKQLFEALRTRGTPG-DWSHIIKQIGMF 397

Query:   416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
             +FTGLN AQ   MT ++H+YMT DGRIS+AGLS     +LADAI
Sbjct:   398 TFTGLNPAQVSFMTKEYHIYMTSDGRISMAGLSSKTVPHLADAI 441

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0010150 "leaf senescence" evidence=IEP

GO:0005777 "peroxisome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009735 "response to cytokinin stimulus" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0009536 "plastid" evidence=IDA

DICTYBASE|DDB_G0282493 aatB "aspartate transaminase" [Dictyostelium discoideum (taxid:44689)]

 Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
 Identities = 221/405 (54%), Positives = 281/405 (69%)

Query:    59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
             F  V + P DPILGVS AFKADTD +K++  VGAYR E  +PYVL  V +AE  +L  G 
Sbjct:    41 FANVPLGPVDPILGVSTAFKADTDPRKVDTSVGAYRDENGKPYVLKCVFEAEKRLL--GA 98

Query:   119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP-G 177
              KEYLPI+G+  FNK++A+LL+G D  V KE+R+ TVQ LSGTG+LR+    I +Y P G
Sbjct:    99 PKEYLPIDGIPEFNKLSAKLLYG-DAMVGKEKRMVTVQALSGTGALRIGIIFIRKYLPAG 157

Query:   178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
               V IS P+W NH NI  ++ V  +EY YYDPKT GLDF GMI D++AAP GS  +LH C
Sbjct:   158 TVVYISRPSWTNHHNICKESGVQSAEYAYYDPKTKGLDFTGMINDMRAAPNGSVFVLHLC 217

Query:   238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
             AHNPTG+DPT EQW  IADV++EKNHIPF D AYQG+ASG LD DA S RLF  RG E+ 
Sbjct:   218 AHNPTGVDPTHEQWNIIADVMREKNHIPFMDCAYQGYASGDLDYDAYSARLFLNRGFEMF 277

Query:   298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGA 357
              AQSYSKN GLY ER GA+ +V    D+        + ++ SQLK   R MYS+PP HGA
Sbjct:   278 SAQSYSKNFGLYGERTGALTIVSHREDV--------IPKMLSQLKMDIRAMYSSPPTHGA 329

Query:   358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF 417
             R+V  V+ +P L   W  E++ M+GRIK+VRQK+ D+L A+   G +W  I+ QIGMF++
Sbjct:   330 RLVTTVLSDPELTALWVKELKEMSGRIKDVRQKVLDALIARKVPG-NWEHIVNQIGMFTY 388

Query:   418 TGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDS 462
             TGL K Q D + NK+H+Y+   GR+SLAGL+    +Y ADAI+D+
Sbjct:   389 TGLTKPQVDILVNKYHIYLLGSGRVSLAGLNNKNIDYFADAILDA 433

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0080130 "L-phenylalanine:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0019266 "asparagine biosynthetic process from oxaloacetate" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

GO:0006533 "aspartate catabolic process" evidence=ISS

GO:0006532 "aspartate biosynthetic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0268664 aatA "aspartate transaminase" [Dictyostelium discoideum (taxid:44689)]

 Score = 1076 (383.8 bits), Expect = 7.0e-109, P = 7.0e-109
 Identities = 211/425 (49%), Positives = 287/425 (67%)

Query:    36 TAGFIKTKSFGRVSMVA-AVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYR 94
             +A  I    FG+ ++   + N + +  V   P DPILGVS A+  DT   K+NLGVGAYR
Sbjct:     4 SARLISNIKFGQKNIRQFSTNTNWWANVQKGPEDPILGVSIAYNKDTSPSKINLGVGAYR 63

Query:    95 TEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVAT 154
              E  +PYVLD VKKA+  + E   + EY PI G+AAFN++ A+L  G +   +KE+R+AT
Sbjct:    64 DENGKPYVLDCVKKADKKIYEANVDHEYAPIVGVAAFNQLAAQLALGEECKHIKEKRIAT 123

Query:   155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL 214
             VQ +SGTG+LR+AA    R+  G    + +PTWGNH  IFNDA +P   Y YY+P T GL
Sbjct:   124 VQSISGTGALRIAADFFARFLKGKTAYVPNPTWGNHNVIFNDAGIPVKSYGYYNPATCGL 183

Query:   215 DFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF 274
             +FE M  DI AAP GS ILLH CAHNPTG+DPT EQW+KI+++ +E+ H   FD AYQGF
Sbjct:   184 NFEAMTKDIAAAPEGSIILLHACAHNPTGVDPTAEQWKKISEICKERGHFVLFDFAYQGF 243

Query:   275 ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAV 334
             ASGS + DA++VR+F   G  + + QS++KN GLY ERIGA +++  +SD A        
Sbjct:   244 ASGSPEKDAAAVRMFVEDGHNIALCQSFAKNFGLYGERIGAFSILTETSDQA-------- 295

Query:   335 IQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS 394
             + V+SQLK L RPMYSNPPV+GAR+V  ++ +  L +EW++E++ MA RI N+R++L   
Sbjct:   296 LNVESQLKILIRPMYSNPPVYGARLVQAILKDKELTNEWRSEVKGMADRIINMREQLVKY 355

Query:   395 LSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEY 454
             L  K  S +DWS I  QIGMF FTGL   Q D + N++H+Y+T++GRIS+AG++    EY
Sbjct:   356 LK-KHGSTRDWSHITTQIGMFCFTGLTPEQVDRLANEYHIYLTRNGRISIAGINSTNVEY 414

Query:   455 LADAI 459
             LA A+
Sbjct:   415 LAKAM 419

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0080130 "L-phenylalanine:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=IEA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IEA;ISS

GO:0019266 "asparagine biosynthetic process from oxaloacetate" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

GO:0006533 "aspartate catabolic process" evidence=ISS

GO:0006532 "aspartate biosynthetic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|P12344 GOT2 "Aspartate aminotransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 1050 (374.7 bits), Expect = 4.0e-106, P = 4.0e-106
 Identities = 210/415 (50%), Positives = 280/415 (67%)

Query:    46 GRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDV 105
             G  +  +A   S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  
Sbjct:    20 GLAAAASARASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPS 79

Query:   106 VKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR 165
             V+KAE  +  +  +KEYLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR
Sbjct:    80 VRKAEAQIAAKNLDKEYLPIAGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALR 139

Query:   166 LAAALIERYFPGAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK 224
             + A+ ++R+F  ++ V +  PTWGNH  IF DA +    YRYYDPKT G DF G I DI 
Sbjct:   140 IGASFLQRFFKFSRDVFLPKPTWGNHTPIFRDAGMQLQSYRYYDPKTCGFDFTGAIEDIS 199

Query:   225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS 284
               P  S ILLH CAHNPTG+DP PEQW+++A V+++ N   FFD+AYQGFASG  + DA 
Sbjct:   200 KIPAQSVILLHACAHNPTGVDPRPEQWKEMATVVKKNNLFAFFDMAYQGFASGDGNKDAW 259

Query:   285 SVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL 344
             +VR F  +G+ + + QSY+KN+GLY ER+GA  VVC  ++ A R        V+SQLK L
Sbjct:   260 AVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKR--------VESQLKIL 311

Query:   345 ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD 404
              RPMYSNPP++GARI + ++ +P L  +W  E++ MA RI ++R +L  +L  K+ S  +
Sbjct:   312 IRPMYSNPPINGARIASTILTSPDLRKQWLHEVKGMADRIISMRTQLVSNLK-KEGSSHN 370

Query:   405 WSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
             W  I+ QIGMF +TGL   Q + +T ++ +YMTKDGRIS+AG++     YLA AI
Sbjct:   371 WQHIIDQIGMFCYTGLKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVAYLAHAI 425

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0009986 "cell surface" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEA

GO:0019551 "glutamate catabolic process to 2-oxoglutarate" evidence=IEA

GO:0019550 "glutamate catabolic process to aspartate" evidence=IEA

GO:0015908 "fatty acid transport" evidence=IEA

GO:0006533 "aspartate catabolic process" evidence=IEA

GO:0006532 "aspartate biosynthetic process" evidence=IEA

GO:0006107 "oxaloacetate metabolic process" evidence=IEA

GO:0080130 "L-phenylalanine:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

MGI|MGI:95792 Got2 "glutamate oxaloacetate transaminase 2, mitochondrial" [Mus musculus (taxid:10090)]

 Score = 1050 (374.7 bits), Expect = 4.0e-106, P = 4.0e-106
 Identities = 212/415 (51%), Positives = 280/415 (67%)

Query:    46 GRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDV 105
             G  +  +A   S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  
Sbjct:    20 GLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPS 79

Query:   106 VKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR 165
             V+KAE  +  +  +KEYLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR
Sbjct:    80 VRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALR 139

Query:   166 LAAALIERYFPGAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK 224
             + A+ ++R+F  ++ V +  P+WGNH  IF DA +    YRYYDPKT G DF G + DI 
Sbjct:   140 VGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDIS 199

Query:   225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS 284
               P  S +LLH CAHNPTG+DP PEQW++IA V+++KN   FFD+AYQGFASG  D DA 
Sbjct:   200 KIPEQSVLLLHACAHNPTGVDPRPEQWKEIASVVKKKNLFAFFDMAYQGFASGDGDKDAW 259

Query:   285 SVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL 344
             +VR F  +G+ + + QSY+KN+GLY ER+GA  VVC  ++ A R        V+SQLK L
Sbjct:   260 AVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKR--------VESQLKIL 311

Query:   345 ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD 404
              RP+YSNPP++GARI A ++ +P L  +W  E++ MA RI ++R +L  +L  K+ S  +
Sbjct:   312 IRPLYSNPPLNGARIAATILTSPDLRKQWLQEVKGMADRIISMRTQLVSNLK-KEGSSHN 370

Query:   405 WSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
             W  I  QIGMF FTGL   Q + +T ++ VYMTKDGRIS+AG++     YLA AI
Sbjct:   371 WQHITDQIGMFCFTGLKPEQVERLTKEFSVYMTKDGRISVAGVTSGNVGYLAHAI 425

GO:0003824 "catalytic activity" evidence=IEA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISO;IDA

GO:0005543 "phospholipid binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006107 "oxaloacetate metabolic process" evidence=IDA

GO:0006520 "cellular amino acid metabolic process" evidence=ISO

GO:0006531 "aspartate metabolic process" evidence=ISO

GO:0006532 "aspartate biosynthetic process" evidence=IDA

GO:0006533 "aspartate catabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0019550 "glutamate catabolic process to aspartate" evidence=IDA

GO:0019551 "glutamate catabolic process to 2-oxoglutarate" evidence=IDA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030170 "pyridoxal phosphate binding" evidence=ISO

GO:0031406 "carboxylic acid binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043204 "perikaryon" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0043648 "dicarboxylic acid metabolic process" evidence=ISO

GO:0045471 "response to ethanol" evidence=ISO

GO:0080130 "L-phenylalanine:2-oxoglutarate aminotransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q02636	ATTY_RHIME	2, ., 6, ., 1, ., 5	0.3517	0.8179	0.9820	yes	no
P12344	AATM_BOVIN	2, ., 6, ., 1, ., 1	0.5187	0.8329	0.9046	yes	no
P05202	AATM_MOUSE	2, ., 6, ., 1, ., 1	0.5238	0.8329	0.9046	yes	no
P95468	TYRB_PARDE	2, ., 6, ., 1, ., 5, 7	0.3989	0.8158	0.9670	yes	no
O94320	AATM_SCHPO	2, ., 6, ., 1, ., 1	0.4547	0.8329	0.8901	yes	no
P46248	AAT5_ARATH	2, ., 6, ., 1, ., 1	0.8329	0.9700	1.0	yes	no
P28011	AAT1_MEDSA	2, ., 6, ., 1, ., 1	0.5445	0.8436	0.9425	N/A	no
Q4R559	AATM_MACFA	2, ., 6, ., 1, ., 1	0.5187	0.8329	0.9046	N/A	no
P44425	AAT_HAEIN	2, ., 6, ., 1, ., 1	0.4402	0.8394	0.9898	yes	no
P72173	AAT_PSEAE	2, ., 6, ., 1, ., 1	0.4222	0.8458	0.9924	yes	no
Q28F67	AATM_XENTR	2, ., 6, ., 1, ., 1	0.5	0.8436	0.9227	yes	no
Q5REB0	AATM_PONAB	2, ., 6, ., 1, ., 1	0.5162	0.8329	0.9046	yes	no
P28734	AATC_DAUCA	2, ., 6, ., 1, ., 1	0.5594	0.8436	0.9728	N/A	no
P58661	AAT_SALTY	2, ., 6, ., 1, ., 1	0.4402	0.8394	0.9898	yes	no
Q54SF7	AATC_DICDI	2, ., 6, ., 1, ., 1	0.5456	0.8394	0.8949	yes	no
P00508	AATM_CHICK	2, ., 6, ., 1, ., 1	0.5012	0.8329	0.9196	yes	no
P00507	AATM_RAT	2, ., 6, ., 1, ., 1	0.5187	0.8329	0.9046	yes	no
P00506	AATM_PIG	2, ., 6, ., 1, ., 1	0.5137	0.8329	0.9046	yes	no
P00505	AATM_HUMAN	2, ., 6, ., 1, ., 1	0.5187	0.8329	0.9046	yes	no
P08907	AATM_HORSE	2, ., 6, ., 1, ., 1	0.5037	0.8329	0.9700	yes	no
P23542	AATC_YEAST	2, ., 6, ., 1, ., 1	0.3990	0.8458	0.9449	yes	no
P26563	AATM_LUPAN	2, ., 6, ., 1, ., 1	0.8307	0.9421	0.9691	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	0.998
4th Layer	2.6.1.1	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	467
PLN02397	423	PLN02397, PLN02397, aspartate transaminase	0.0
PTZ00376	404	PTZ00376, PTZ00376, aspartate aminotransferase; Pr	0.0
PRK09257	396	PRK09257, PRK09257, aromatic amino acid aminotrans	0.0
COG1448	396	COG1448, TyrB, Aspartate/tyrosine/aromatic aminotr	0.0
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	1e-102
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	3e-43
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	7e-10
COG0079	356	COG0079, HisC, Histidinol-phosphate/aromatic amino	2e-06
PRK08637	388	PRK08637, PRK08637, hypothetical protein; Provisio	4e-06
PRK14809	357	PRK14809, PRK14809, histidinol-phosphate aminotran	3e-04

>gnl|CDD|215222 PLN02397, PLN02397, aspartate transaminase

 Score =  799 bits (2067), Expect = 0.0
 Identities = 274/431 (63%), Positives = 330/431 (76%), Gaps = 9/431 (2%)

Query: 37  AGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTE 96
             F+K KS  R SM AA   SRFE V  APPDPILGV+EAF AD    KLNLGVGAYRTE
Sbjct: 2   NPFLKAKSRSRSSMAAAAASSRFEHVEPAPPDPILGVTEAFLADPSPVKLNLGVGAYRTE 61

Query: 97  ELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ 156
           E +P VL+VV+KAE  +L    NKEYLPIEGLA FNK++A+L +GAD+  +KE RVATVQ
Sbjct: 62  EGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQ 121

Query: 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF 216
            LSGTGSLRL A  + R++PG+ + I +PTWGNH NIF DA VP   YRYYDPKT GLDF
Sbjct: 122 CLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDF 181

Query: 217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276
           +G++ D+KAAP GSF+LLH CAHNPTG+DPTPEQWE+I+D+I+ KNH+PFFD AYQGFAS
Sbjct: 182 DGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFAS 241

Query: 277 GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQ 336
           G LD DA SVR+F   G E+LVAQSY+KN+GLY ER+GA++VVC S+D+A R        
Sbjct: 242 GDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVR-------- 293

Query: 337 VKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS 396
           VKSQLK +ARPMYSNPP+HGA IVA ++G+P LF EW  E++ MA RI ++RQKL+D+L 
Sbjct: 294 VKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALE 353

Query: 397 AKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLA 456
           A+   G DWS I +QIGMFSFTGLNK Q D MT ++H+YMT+DGRIS+AGLS     YLA
Sbjct: 354 ARGSPG-DWSHITKQIGMFSFTGLNKEQVDRMTKEYHIYMTRDGRISMAGLSSKNVPYLA 412

Query: 457 DAIIDSYHNVS 467
           DAI     N S
Sbjct: 413 DAIHAVVTNAS 423

Length = 423

>gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional

 Score =  610 bits (1576), Expect = 0.0
 Identities = 227/411 (55%), Positives = 299/411 (72%), Gaps = 10/411 (2%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F  V + PPDPILG++ AFKAD    K+NLG+GAYR E  +PYVL+ V+KAE ++ E+
Sbjct: 3   SLFSQVPLGPPDPILGLAAAFKADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEK 62

Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176
             +KEYLPIEGL +F +   +LLFG  +  L E+R+ATVQ LSGTG+LRL    ++R+ P
Sbjct: 63  NLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLP 122

Query: 177 GAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               V +S+PTW NH NIF  A +   EYRYYDPKT GLDF+GM+ D++ AP GS +LLH
Sbjct: 123 AGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLH 182

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DPT EQW++IADV++ KN IPFFD+AYQGFASG LD DA ++RLFA RG+E
Sbjct: 183 ACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVE 242

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
            LVAQS+SKN+GLY ERIGA+++VC++ + AA         V SQLK + RPMYS+PP+H
Sbjct: 243 FLVAQSFSKNMGLYGERIGALHIVCANKEEAAN--------VLSQLKLIIRPMYSSPPIH 294

Query: 356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
           GARI   ++ +P L  EW +E++ M+GRI+N+RQ L+D L A    G DW  I+ QIGMF
Sbjct: 295 GARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPG-DWEHIINQIGMF 353

Query: 416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNV 466
           SFTGL K Q + +  K+H+Y+  +GRIS+AGL+    +Y+A+AI D   NV
Sbjct: 354 SFTGLTKEQVERLIEKYHIYLLDNGRISVAGLTSKNVDYVAEAIHDVVRNV 404

Length = 404

>gnl|CDD|181731 PRK09257, PRK09257, aromatic amino acid aminotransferase; Provisional

 Score =  549 bits (1418), Expect = 0.0
 Identities = 205/403 (50%), Positives = 267/403 (66%), Gaps = 10/403 (2%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +  AP DPILG+ EAF+AD    K+NLGVG Y+ E+ +  VL  VKKAE  +LE   
Sbjct: 2   FEHLEAAPADPILGLMEAFRADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETET 61

Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YLPIEGLAA+ +   ELLFGAD+  L   RVATVQ   GTG+LR+ A  ++R FP A
Sbjct: 62  TKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDA 121

Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           KV +S PTW NH+ IF  A +    Y YYD  T GLDF+ M+AD+  AP G  +LLHGC 
Sbjct: 122 KVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCC 181

Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTG D TPEQW+++A++++E+  IPF D+AYQGF  G L+ DA  +R FA  G+ELLV
Sbjct: 182 HNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDG-LEEDAYGLRAFAAAGLELLV 240

Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A S+SKN GLY ER+GA++VV   ++ A R        V SQLK   R  YSNPP HGA 
Sbjct: 241 ASSFSKNFGLYGERVGALSVVAEDAEEADR--------VLSQLKATIRTNYSNPPAHGAA 292

Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           IVA ++ +P L  EW+AE+E M  RIK +RQ L ++L AK    +D+ FI RQ GMFS++
Sbjct: 293 IVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKG-PSRDFDFIARQRGMFSYS 351

Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 461
           GL   Q D +  ++ VY    GRI++AGL+ +  +Y+A+AI  
Sbjct: 352 GLTPEQVDRLREEFGVYAVGSGRINVAGLNESNIDYVAEAIAA 394

Length = 396

>gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score =  543 bits (1401), Expect = 0.0
 Identities = 212/406 (52%), Positives = 277/406 (68%), Gaps = 10/406 (2%)

Query: 58  RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG 117
            FE +  AP DPILG+ EAFKAD    K+NLG+G Y+ E+ +  VL  VKKAE  +LE+ 
Sbjct: 1   MFEKIEAAPADPILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQE 60

Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
           + K YLPIEGL  F +   +LLFGAD+  L E RVATVQ L GTG+LR+AA  + R+FP 
Sbjct: 61  KTKNYLPIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPD 120

Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
           A V IS PTW NHK IF  A +    Y YYD +T GLDF+GM+AD+K AP GS +LLHGC
Sbjct: 121 ATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGC 180

Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
            HNPTGIDPT EQW+++AD+I+E+  IPFFD+AYQGFA G L+ DA ++RLFA  G ELL
Sbjct: 181 CHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELL 239

Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGA 357
           VA S+SKN GLY ER+GA++VV   ++ A R        V SQLK + R  YSNPP HGA
Sbjct: 240 VASSFSKNFGLYGERVGALSVVAEDAEEADR--------VLSQLKAIIRTNYSNPPAHGA 291

Query: 358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF 417
            +VA ++ NP L  EW+ E+E M  RI  +RQ L D+L A   + +++ FI+ Q GMFS+
Sbjct: 292 AVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKAL-GAPRNFDFIISQRGMFSY 350

Query: 418 TGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSY 463
           TGL+  Q D +  ++ +Y+   GRI++AGL+ +  +Y+A AI    
Sbjct: 351 TGLSPEQVDRLREEFGIYLVASGRINVAGLNTSNIDYVAKAIAAVL 396

Length = 396

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score =  309 bits (794), Expect = e-102
 Identities = 123/389 (31%), Positives = 169/389 (43%), Gaps = 44/389 (11%)

Query: 83  EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA 142
             K+NLG   Y  +      L  V KAE   L  G    Y P +GL    +  A+ L   
Sbjct: 1   TDKINLGSNEYLGDS---GTLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLG-- 55

Query: 143 DNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWS 202
            + VLK  R A V   SG G+   A   + R  PG  +L+ +PT+ ++  IF  A     
Sbjct: 56  RSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVV 115

Query: 203 EYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN 262
            Y  Y      LDF+ + A +K A  G+ ++LH   HNPTG   T E+ EK+ D+ +E N
Sbjct: 116 RYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHN 175

Query: 263 HIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS 322
            +   D AY GF  G    DA + R     G  LLV  S+SK  GL   R+G +    + 
Sbjct: 176 ILLLVDEAYAGFVFG--SLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAA- 232

Query: 323 SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAG 382
                         V SQL++LARP YS    H     A  + +P L       +E M  
Sbjct: 233 --------------VISQLRKLARPFYS--STHLQAAAAAALSDPLLVASE---LEEMRQ 273

Query: 383 RIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----KAQSDNMTNKWHVYMTK 438
           RIK  R  L D L A        S +  Q G F  TGL+     A +  +  +  VY+T 
Sbjct: 274 RIKERRDYLRDGLEA-----AGLSVLPSQAGFFLLTGLDPEAALALAQVLLEEVGVYVTP 328

Query: 439 --------DGRISLAGLSLAKCEYLADAI 459
                     RI++AG +  + E L +AI
Sbjct: 329 GSSFGGPGWLRITVAGGTEEELEELLEAI 357

Length = 357

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score =  155 bits (394), Expect = 3e-43
 Identities = 71/389 (18%), Positives = 129/389 (33%), Gaps = 56/389 (14%)

Query: 86  LNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNS 145
           ++L +G          +  +   A      R     Y P  GL    +  AE L      
Sbjct: 1   IDLSIGEPDFPPPPEVLEALAAAAL-----RAGLLGYYPDPGLPELREAIAEWLGRRGGV 55

Query: 146 VLKEQRVATVQGLSGTGSLRLAA-ALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEY 204
            +  + +  V       +L L   AL+    PG +VL+  PT+  ++     A       
Sbjct: 56  DVPPEEI--VVTNGAQEALSLLLRALLN---PGDEVLVPDPTYPGYEAAARLAGAEVVPV 110

Query: 205 RYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHI 264
              +     LD E  + +    P    + L+   +NPTG   + E+ E++A++ ++   +
Sbjct: 111 PLDEEGGFLLDLE--LLEAAKTPKTKLLYLNNP-NNPTGAVLSEEELEELAELAKKHGIL 167

Query: 265 PFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD 324
              D AY        D +             ++V +S+SK  GL   RIG +  +    +
Sbjct: 168 IISDEAYAELVY---DGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYL--IAPPEE 222

Query: 325 LAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI 384
           L  R            LK+L     S P        A      A  D+ +  +E +  R 
Sbjct: 223 LLER------------LKKLLPYTTSGPSTLSQAAAA------AALDDGEEHLEELRERY 264

Query: 385 KNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNK----AQSDNMTNKWHVYMTKDG 440
           +  R  L ++L            +    G F +  L +       + +  +  V +    
Sbjct: 265 RRRRDALLEALKELG----PLVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGS 320

Query: 441 ----------RISLAGLSLAKCEYLADAI 459
                     R+S A     + E   + +
Sbjct: 321 AFGEGGEGFVRLSFAT-PEEELEEALERL 348

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score = 60.4 bits (147), Expect = 7e-10
 Identities = 72/353 (20%), Positives = 129/353 (36%), Gaps = 62/353 (17%)

Query: 64  MAPPDPILGVSEAFKADTDEKK---LNLGVGAYRTEELQP------YVLDVVKKAENLML 114
           + P      ++EA  A   + K   ++L +G       +P      ++++   +A    L
Sbjct: 6   VLPSYTFAVLAEAKAAAELKGKEDVIDLSIG-------EPDFPTPEHIIEAAIEA----L 54

Query: 115 ERGENKEYLPIEGLAAFNKVTAELL---FGADNSVLKEQRVATVQGLSGTGSLRLAA-AL 170
           E G    Y P  G+    +  AE     +G D  V  E+ +    G     +L LA  AL
Sbjct: 55  EEGGTH-YTPSAGIPELREAIAEKYKRRYGLD--VDPEEEIIVTAG--AKEALFLAFLAL 109

Query: 171 IERYFPGAKVLISSPTWGNHKNIFN--DARVPWSEYRYYDPKTVGLDFEGMIADIKAA-- 226
           +    PG +VLI  P + +++        +                 F+  + D++AA  
Sbjct: 110 LN---PGDEVLIPDPGYPSYEAAVKLAGGKP-----VPVPLDEEENGFKPDLEDLEAAIT 161

Query: 227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV 286
           P    I+L    +NPTG   + E+ + I ++ +E + I   D  Y+         +  S+
Sbjct: 162 PKTKAIIL-NSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYD--GAEHPSI 218

Query: 287 RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLAR 346
              A      +   S+SK  G+   RIG +  V    +L A             L++L  
Sbjct: 219 LELAGARDRTITINSFSKTYGMTGWRIGWV--VGPPEELIAA------------LRKLKS 264

Query: 347 PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 399
            + S  P          +  P   +     +E M    +  R  L ++L+   
Sbjct: 265 YLTSCAPTPAQYAAIAALNGPQSDE----VVEEMREEYRERRDLLVEALNEIG 313

Length = 393

>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 21/154 (13%)

Query: 167 AAALIERYF-----PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA 221
           +  LIE        PG  VLI  PT+  ++     A     +      K   LD + ++A
Sbjct: 84  SDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPL---KEFRLDLDAILA 140

Query: 222 DIKAAPGGSFILLHGCA-HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD 280
            I+      F+    C  +NPTG     E+   + + +  +  +   D AY  F+     
Sbjct: 141 AIRDKTKLVFL----CNPNNPTGTLLPREELRALLEAL-PEGGLVVIDEAYIEFS----- 190

Query: 281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIG 314
              SS+ L       L+V +++SK  GL   R+G
Sbjct: 191 -PESSLELLKYPP-NLIVLRTFSKAFGLAGLRVG 222

Length = 356

>gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 10/107 (9%)

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD--PKTVGLDFEGMIADIKAA-PGGSFI 232
            G  VL+    WGN+K  FN  R   +E   Y    +  G D + +   ++AA   G  I
Sbjct: 92  QGDTVLLPDHNWGNYKLTFNTRRG--AEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVI 149

Query: 233 LLHGCAHNPTGIDPTPEQWEKIADVIQE-----KNHIPFFDVAYQGF 274
           ++    +NPTG  PT ++   I + I+E        +   D AY G 
Sbjct: 150 VILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGL 196

Length = 388

>gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 15/170 (8%)

Query: 160 GTGSLR-LAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG 218
           G G+L  LA A+++   PG  VL+  P +  +      AR    E R Y P +   DFE 
Sbjct: 91  GDGALDYLARAMLD---PGDTVLVPDPGFAYYGM---SARYHHGEVREY-PVSKADDFEQ 143

Query: 219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS 278
               +  A  G  I+     HNPTG +   ++ E +A+   E+  +   D AY  FA   
Sbjct: 144 TADTVLDAYDGERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLV-VVDEAYGEFA--- 199

Query: 279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR 328
                S+V L   R  ++ V +++SK  GL   R+G   V    +D  AR
Sbjct: 200 --ERPSAVALVEERD-DVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYAR 246

Length = 357

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	467
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	100.0
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	100.0
PLN02397	423	aspartate transaminase	100.0
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	100.0
PTZ00376	404	aspartate aminotransferase; Provisional	100.0
PRK09257	396	aromatic amino acid aminotransferase; Provisional	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	100.0
PLN00175	413	aminotransferase family protein; Provisional	100.0
PRK07366	388	succinyldiaminopimelate transaminase; Validated	100.0
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	100.0
PRK07681	399	aspartate aminotransferase; Provisional	100.0
PRK08636	403	aspartate aminotransferase; Provisional	100.0
PTZ00377	481	alanine aminotransferase; Provisional	100.0
PRK08068	389	transaminase; Reviewed	100.0
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	100.0
PRK06855	433	aminotransferase; Validated	100.0
PLN02187	462	rooty/superroot1	100.0
PRK06207	405	aspartate aminotransferase; Provisional	100.0
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	100.0
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	100.0
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	100.0
PLN02656	409	tyrosine transaminase	100.0
PRK07682	378	hypothetical protein; Validated	100.0
PRK06348	384	aspartate aminotransferase; Provisional	100.0
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	100.0
PRK09148	405	aminotransferase; Validated	100.0
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	100.0
PRK08960	387	hypothetical protein; Provisional	100.0
PLN02231	534	alanine transaminase	100.0
PRK06290	410	aspartate aminotransferase; Provisional	100.0
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	100.0
PRK06107	402	aspartate aminotransferase; Provisional	100.0
PRK05942	394	aspartate aminotransferase; Provisional	100.0
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK12414	384	putative aminotransferase; Provisional	100.0
PRK07337	388	aminotransferase; Validated	100.0
PRK05957	389	aspartate aminotransferase; Provisional	100.0
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	100.0
PRK06108	382	aspartate aminotransferase; Provisional	100.0
PTZ00433	412	tyrosine aminotransferase; Provisional	100.0
PRK07309	391	aromatic amino acid aminotransferase; Validated	100.0
PRK07324	373	transaminase; Validated	100.0
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK07683	387	aminotransferase A; Validated	100.0
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK08912	387	hypothetical protein; Provisional	100.0
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	100.0
PRK05764	393	aspartate aminotransferase; Provisional	100.0
PRK09082	386	methionine aminotransferase; Validated	100.0
PRK05839	374	hypothetical protein; Provisional	100.0
PRK08361	391	aspartate aminotransferase; Provisional	100.0
PRK08175	395	aminotransferase; Validated	100.0
PRK08637	388	hypothetical protein; Provisional	100.0
PRK07777	387	aminotransferase; Validated	100.0
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	100.0
PRK07550	386	hypothetical protein; Provisional	100.0
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	100.0
PLN02368	407	alanine transaminase	100.0
PRK08363	398	alanine aminotransferase; Validated	100.0
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	100.0
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	100.0
PRK09265	404	aminotransferase AlaT; Validated	100.0
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	100.0
PRK07568	397	aspartate aminotransferase; Provisional	100.0
PRK09275	527	aspartate aminotransferase; Provisional	100.0
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	100.0
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	100.0
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	100.0
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	100.0
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	100.0
PRK01533	366	histidinol-phosphate aminotransferase; Validated	100.0
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	100.0
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	100.0
PRK06836	394	aspartate aminotransferase; Provisional	100.0
PRK06358	354	threonine-phosphate decarboxylase; Provisional	100.0
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	100.0
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	100.0
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	100.0
PRK08056	356	threonine-phosphate decarboxylase; Provisional	100.0
PLN02672	1082	methionine S-methyltransferase	100.0
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	100.0
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	100.0
PRK09105	370	putative aminotransferase; Provisional	100.0
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	100.0
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	100.0
PRK07392	360	threonine-phosphate decarboxylase; Validated	100.0
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	100.0
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	100.0
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	100.0
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	100.0
PRK06225	380	aspartate aminotransferase; Provisional	100.0
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	100.0
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	100.0
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	100.0
PRK07908	349	hypothetical protein; Provisional	100.0
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	100.0
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	100.0
PRK06425	332	histidinol-phosphate aminotransferase; Validated	100.0
PRK02731	367	histidinol-phosphate aminotransferase; Validated	100.0
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	100.0
PRK03321	352	putative aminotransferase; Provisional	100.0
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	100.0
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	100.0
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	100.0
PRK00950	361	histidinol-phosphate aminotransferase; Validated	100.0
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	100.0
KOG0634	472	consensus Aromatic amino acid aminotransferase and	100.0
PRK08354	311	putative aminotransferase; Provisional	100.0
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	100.0
cd00609	350	AAT_like Aspartate aminotransferase family. This f	100.0
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	100.0
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.97
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.96
PRK10534	333	L-threonine aldolase; Provisional	99.96
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.96
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.96
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.96
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.96
PLN02721	353	threonine aldolase	99.95
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.95
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.95
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.95
PLN02822	481	serine palmitoyltransferase	99.95
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.95
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.95
PRK02627	396	acetylornithine aminotransferase; Provisional	99.95
PLN02483	489	serine palmitoyltransferase	99.95
PRK13392	410	5-aminolevulinate synthase; Provisional	99.95
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.95
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.94
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.94
PRK02948	381	cysteine desulfurase; Provisional	99.94
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.94
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.94
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.94
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.94
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.93
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.93
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.93
PRK07049	427	methionine gamma-lyase; Validated	99.93
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.93
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.93
PLN02242	418	methionine gamma-lyase	99.93
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.93
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.93
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.93
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.92
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.92
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.92
PRK07179	407	hypothetical protein; Provisional	99.92
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.92
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.92
PLN02409	401	serine--glyoxylate aminotransaminase	99.92
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.92
PRK09064	407	5-aminolevulinate synthase; Validated	99.91
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.91
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.91
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.91
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.91
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.91
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.91
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.91
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.9
PRK06234	400	methionine gamma-lyase; Provisional	99.9
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.9
PRK13393	406	5-aminolevulinate synthase; Provisional	99.9
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.9
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.9
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.9
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.89
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.89
PRK04260	375	acetylornithine aminotransferase; Provisional	99.89
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.89
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.89
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.89
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.89
PRK08249	398	cystathionine gamma-synthase; Provisional	99.89
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.89
PRK06460	376	hypothetical protein; Provisional	99.88
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.88
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.88
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.88
PRK08045	386	cystathionine gamma-synthase; Provisional	99.88
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.88
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.88
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.88
PRK07582	366	cystathionine gamma-lyase; Validated	99.87
PRK14012	404	cysteine desulfurase; Provisional	99.87
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.87
PRK06767	386	methionine gamma-lyase; Provisional	99.87
PRK08776	405	cystathionine gamma-synthase; Provisional	99.87
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.86
PRK07811	388	cystathionine gamma-synthase; Provisional	99.86
PRK07503	403	methionine gamma-lyase; Provisional	99.86
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.86
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.86
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.86
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.85
PLN00144	382	acetylornithine transaminase	99.85
PRK08861	388	cystathionine gamma-synthase; Provisional	99.85
PRK07050	394	cystathionine beta-lyase; Provisional	99.85
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.85
PRK08574	385	cystathionine gamma-synthase; Provisional	99.85
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.84
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.84
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.84
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.84
PRK09028	394	cystathionine beta-lyase; Provisional	99.83
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.83
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.83
PLN02651	364	cysteine desulfurase	99.83
PRK07505	402	hypothetical protein; Provisional	99.83
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.83
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.83
PLN02624	474	ornithine-delta-aminotransferase	99.83
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.82
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.82
PRK08064	390	cystathionine beta-lyase; Provisional	99.82
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.82
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.82
PRK07671	377	cystathionine beta-lyase; Provisional	99.82
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.81
PRK05939	397	hypothetical protein; Provisional	99.81
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.81
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.81
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.8
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.8
PLN02509	464	cystathionine beta-lyase	99.8
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.8
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.8
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.8
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.8
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.79
PRK05968	389	hypothetical protein; Provisional	99.79
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.79
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.79
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.78
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.77
PRK05967	395	cystathionine beta-lyase; Provisional	99.76
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.76
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.76
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.75
PLN02955	476	8-amino-7-oxononanoate synthase	99.75
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.75
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.74
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.74
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.73
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.73
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.73
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.72
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.72
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.71
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.71
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.7
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.7
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.69
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.69
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.69
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.68
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.68
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.67
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.67
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.67
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.66
PRK08114	395	cystathionine beta-lyase; Provisional	99.65
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.64
PRK02769	380	histidine decarboxylase; Provisional	99.64
PLN02271	586	serine hydroxymethyltransferase	99.64
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.64
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.64
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.64
PRK13237	460	tyrosine phenol-lyase; Provisional	99.64
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.63
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.63
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.63
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.63
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.63
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.62
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	99.62
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.62
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.62
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.61
PRK04311	464	selenocysteine synthase; Provisional	99.61
PRK06541	460	hypothetical protein; Provisional	99.61
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.61
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.61
PRK03080	378	phosphoserine aminotransferase; Provisional	99.61
PRK06434	384	cystathionine gamma-lyase; Validated	99.61
PLN02724	805	Molybdenum cofactor sulfurase	99.59
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.59
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.59
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.58
PLN03032	374	serine decarboxylase; Provisional	99.57
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.57
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.56
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.55
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.54
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.53
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.52
PRK07046	453	aminotransferase; Validated	99.51
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.5
PRK15029	755	arginine decarboxylase; Provisional	99.5
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.5
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.49
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.49
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.48
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.47
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.47
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.47
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.46
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.45
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.45
PRK06062	451	hypothetical protein; Provisional	99.45
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.45
PRK07482	461	hypothetical protein; Provisional	99.44
PRK05965	459	hypothetical protein; Provisional	99.44
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.44
PRK07481	449	hypothetical protein; Provisional	99.44
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.44
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.43
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.43
PRK15400	714	lysine decarboxylase CadA; Provisional	99.42
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.42
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.42
PRK07678	451	aminotransferase; Validated	99.41
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.41
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.4
PRK06105	460	aminotransferase; Provisional	99.4
PRK06917	447	hypothetical protein; Provisional	99.4
PRK07036	466	hypothetical protein; Provisional	99.4
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.39
PRK13578	720	ornithine decarboxylase; Provisional	99.39
PLN02880	490	tyrosine decarboxylase	99.39
PRK12403	460	putative aminotransferase; Provisional	99.38
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.38
PLN02452	365	phosphoserine transaminase	99.37
PLN02263	470	serine decarboxylase	99.37
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.37
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.37
PRK08297	443	L-lysine aminotransferase; Provisional	99.37
PLN02590	539	probable tyrosine decarboxylase	99.36
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.35
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.35
PRK06149	972	hypothetical protein; Provisional	99.34
PRK07483	443	hypothetical protein; Provisional	99.33
PRK06148	1013	hypothetical protein; Provisional	99.31
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.31
PRK07480	456	putative aminotransferase; Validated	99.3
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.26
PRK12462	364	phosphoserine aminotransferase; Provisional	99.22
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.2
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.2
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.18
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.17
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.16
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.15
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.14
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.13
PRK05367	954	glycine dehydrogenase; Provisional	99.11
PRK12566	954	glycine dehydrogenase; Provisional	99.1
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	99.1
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.07
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	98.98
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	98.98
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	98.97
PRK05367	954	glycine dehydrogenase; Provisional	98.96
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	98.92
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	98.9
PLN02414	993	glycine dehydrogenase (decarboxylating)	98.78
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	98.69
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.68
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	98.65
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	98.65
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.62
COG4100	416	Cystathionine beta-lyase family protein involved i	98.6
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	98.56
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	98.5
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	98.46
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	98.46
COG3844	407	Kynureninase [Amino acid transport and metabolism]	98.43
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.23
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.21
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	98.13
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.1
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	98.02
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	97.75
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	97.73
KOG0629	510	consensus Glutamate decarboxylase and related prot	97.49
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	97.41
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	97.28
PRK12566	954	glycine dehydrogenase; Provisional	97.0
PLN02672	1082	methionine S-methyltransferase	96.52
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	94.91
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	94.89
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	88.61

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=5e-68  Score=496.33  Aligned_cols=395  Identities=53%  Similarity=0.915  Sum_probs=380.6

Q ss_pred             ccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHH
Q 012238           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (467)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~  138 (467)
                      |++++..|+++|+++.+.+++++++++|||++|.|+|+.+.+++.+.|++|.+...+......|.|..|+++++++++++
T Consensus         2 F~~i~~~p~DpIlgL~e~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~l   81 (396)
T COG1448           2 FEKIEAAPADPILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQKL   81 (396)
T ss_pred             ccccccCCCCchhHHHHHHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999998777779999999999999999999


Q ss_pred             HhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhh
Q 012238          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG  218 (467)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~  218 (467)
                      +++.+...++++++..+||.|||||+.+++.+++...|..+|++++|+|++|..+++..|.++..||+++.++.++|++.
T Consensus        82 lFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~  161 (396)
T COG1448          82 LFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDG  161 (396)
T ss_pred             hcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHH
Confidence            99988788889999999999999999999999999999889999999999999999999999999999988888999999


Q ss_pred             HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238          219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (467)
Q Consensus       219 l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (467)
                      +.+.+++.+.+..++++.++|||||..++.++|.+|+++.++.+++.++|-+|++|..| ++.|...++.++.....+++
T Consensus       162 mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~G-leeDa~~lR~~a~~~~~~lv  240 (396)
T COG1448         162 MLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELLV  240 (396)
T ss_pred             HHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccc-hHHHHHHHHHHHHhCCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999988 88999999999998888999


Q ss_pred             EecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                      ..||||+||++|.|+|++.+|+.+++.+.+        +.+|++...+..|++||.++..+++.+|++++++.+|++++.
T Consensus       241 a~S~SKnfgLYgERVGa~~vva~~~~~a~~--------v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~  312 (396)
T COG1448         241 ASSFSKNFGLYGERVGALSVVAEDAEEADR--------VLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELE  312 (396)
T ss_pred             EehhhhhhhhhhhccceeEEEeCCHHHHHH--------HHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999        999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHHHHHHH
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADA  458 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~~~~~~  458 (467)
                      .|++|+.++|..|++.|+ ..+.+.+|+++..+.|||.+.|++++++.+|.+++||+++.+||||++++++.++++++++
T Consensus       313 ~Mr~Ri~~mR~~lv~~L~-~~~~~~~f~~i~~Q~GMFsy~Gls~~QV~rLree~~IY~v~sGRi~vaGl~~~ni~~va~a  391 (396)
T COG1448         313 EMRQRILEMRQALVDALK-ALGAPRNFDFIISQRGMFSYTGLSPEQVDRLREEFGIYLVASGRINVAGLNTSNIDYVAKA  391 (396)
T ss_pred             HHHHHHHHHHHHHHHHHH-hhCCCcccchHhhcCceeecCCCCHHHHHHHHHhccEEEecCCeeeeccCChhhHHHHHHH
Confidence            999999999999999999 8877778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 012238          459 IIDSY  463 (467)
Q Consensus       459 l~~~l  463 (467)
                      |.+++
T Consensus       392 i~~v~  396 (396)
T COG1448         392 IAAVL  396 (396)
T ss_pred             HHhhC
Confidence            98763

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-66  Score=475.31  Aligned_cols=409  Identities=59%  Similarity=1.000  Sum_probs=393.5

Q ss_pred             cchhhcccccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcch
Q 012238           49 SMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGL  128 (467)
Q Consensus        49 ~~~~~~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~  128 (467)
                      +++.....|++++|+++|||||+++.+++++|+++.+|||++|.|+|+++.|++.+.|++|.++.+....+.+|.|+.|+
T Consensus        18 a~~~~~~~s~~s~V~maPpDpILGVTeAfk~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYlpI~Gl   97 (427)
T KOG1411|consen   18 AAASARASSWWSHVEMAPPDPILGVTEAFKKDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYLPITGL   97 (427)
T ss_pred             hhhcccccchhhcCCCCCCCCcccHHHHHhcCCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchhccccch
Confidence            34444445799999999999999999999999999999999999999999999999999999999887778999999999


Q ss_pred             HHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeec
Q 012238          129 AAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD  208 (467)
Q Consensus       129 ~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~  208 (467)
                      ++|.+..+++..+.....+..++|+.+|+.+||+|+.+.+.|++.+.++..|.+|+|+|.++.++++.+|+.+..|.+++
T Consensus        98 ~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd  177 (427)
T KOG1411|consen   98 AEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYD  177 (427)
T ss_pred             HHHHHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccccCcceeeeeecc
Confidence            99999999999999889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012238          209 PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (467)
Q Consensus       209 ~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~  288 (467)
                      +.+.++|++.+.+.+.+.+++..++++.+.|||||+..+.|+|++|.++.++++.+.++|.+|++|..++.+.|+..++.
T Consensus       178 ~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~  257 (427)
T KOG1411|consen  178 PKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRL  257 (427)
T ss_pred             ccccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChh
Q 012238          289 FATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPA  368 (467)
Q Consensus       289 ~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~  368 (467)
                      |++.+.++++++||.|++|+.|.|+|.+.+||.+++...+        +.+|++.+.++++++||.++++++..+|++++
T Consensus       258 F~~~g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~r--------V~SQlk~liRpmYSnPP~hGArIv~~Il~d~~  329 (427)
T KOG1411|consen  258 FVEDGHEILLAQSYAKNMGLYGERVGALSVVCKDADEAKR--------VESQLKILIRPMYSNPPLHGARIVATILSDPD  329 (427)
T ss_pred             HHHcCCceEeehhhhhhcchhhhccceeEEEecCHHHHHH--------HHHHHHHHhcccccCCCccchhhhhhccCChH
Confidence            9999999999999999999999999999999999999999        99999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCC
Q 012238          369 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLS  448 (467)
Q Consensus       369 ~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~  448 (467)
                      ++.+|..++..+..|+..+|+.|.+.|+ ..|.+++|+++..+-|||+|.++++++++.|.++++|+++..||||+++++
T Consensus       330 l~~~W~~evk~MadRi~~mR~~L~d~L~-~~gs~~~W~hI~~QIGMF~fTgl~peQv~~l~ke~~iYmT~dGRiS~aG~s  408 (427)
T KOG1411|consen  330 LKNQWLGEVKGMADRIISMRQQLFDALE-KEGSPGNWSHITKQIGMFCFTGLNPEQVDWLTKEYHIYLTKDGRISMAGLS  408 (427)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHhHHhh-cCCCCccHHHHHHhhheeeecCCCHHHHHHHHhhheeeeccCceEeecccc
Confidence            9999999999999999999999999999 888888999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhc
Q 012238          449 LAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       449 ~~~i~~~~~~l~~~l~~~  466 (467)
                      ..++.++.++|.++.+..
T Consensus       409 s~nV~yLa~aih~vtk~~  426 (427)
T KOG1411|consen  409 SSNVPYLADAIHAVTKNT  426 (427)
T ss_pred             ccCCcccchhhHhHhcCC
Confidence            999999999999887653

>PLN02397 aspartate transaminase

Probab=100.00  E-value=2.4e-61  Score=488.53  Aligned_cols=422  Identities=64%  Similarity=1.064  Sum_probs=355.2

Q ss_pred             ccccccccccCcccchhhcccccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHh
Q 012238           36 TAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE  115 (467)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~  115 (467)
                      +|||.+.+++++-+|+.+...|+|+++...+.++|..+.+.++.+..+.+|+|+.|.+.|+.++|.+.+.+.++...++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~   80 (423)
T PLN02397          1 SNPFLKAKSRSRSSMAAAAASSRFEHVEPAPPDPILGVTEAFLADPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLA   80 (423)
T ss_pred             CCcccccccccccchhhhhhhhHHHcCCcCCCChHHHHHHHHhhCCCcceEecccceeeCCCCCcccchHHHHHHHHhhc
Confidence            47999999999999999888889999999999999999988887777789999999865766666666788888766654


Q ss_pred             cCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh
Q 012238          116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN  195 (467)
Q Consensus       116 ~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~  195 (467)
                      .+...+|+|..|.++||+++++++.+.++...++++|..+++.+|+++..++..++..+.|||+|++++|+|+.|..+++
T Consensus        81 ~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~  160 (423)
T PLN02397         81 GSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFR  160 (423)
T ss_pred             cCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH
Confidence            44446899999999999999999877655555555665555677777776655566666799999999999999999999


Q ss_pred             hCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012238          196 DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA  275 (467)
Q Consensus       196 ~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~  275 (467)
                      ..|++++.+++.+++++++|++.+++.+++..++++++++++||||||.+++.+++++|+++|++||++||+||+|.+|.
T Consensus       161 ~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~  240 (423)
T PLN02397        161 DAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFA  240 (423)
T ss_pred             HcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCcc
Confidence            99999999998544568899999999887544578999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchH
Q 012238          276 SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH  355 (467)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  355 (467)
                      +++...+..++..+....+++|+++||||+|+++|||+||+++++++++.++.        +.+++....+..+.+++.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  312 (423)
T PLN02397        241 SGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVR--------VKSQLKLIARPMYSNPPIH  312 (423)
T ss_pred             CCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHH--------HHHHHHHHHhcccCCCcHH
Confidence            85311123344444444567999999999999999999999644567777766        6655766666667778889


Q ss_pred             HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEE
Q 012238          356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVY  435 (467)
Q Consensus       356 ~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~  435 (467)
                      .|.++..+|+++.+.+.|.+++++++++++++|+.+.+.|+ +++.+..|.+..|+||||+|++++.+++++|++++||+
T Consensus       313 ~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~-~~~~~~~~~~~~p~gg~fl~~~l~~~~~~~Ll~~~~V~  391 (423)
T PLN02397        313 GASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALE-ARGSPGDWSHITKQIGMFSFTGLNKEQVDRMTKEYHIY  391 (423)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCCcccCCceEEEecCCCHHHHHHHHHhCCEE
Confidence            99999999999887778877789999999999999999999 87754457778899999999999988999999999999


Q ss_pred             EeCCCeEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          436 MTKDGRISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       436 v~~ggRis~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +.++|||++++.+++++++++++|++++++.
T Consensus       392 v~~~~Ri~~~~~~~~~i~~~~~~i~~~~~~~  422 (423)
T PLN02397        392 MTRDGRISMAGLSSKNVPYLADAIHAVVTNA  422 (423)
T ss_pred             ECCCCeEEEeeCCHHHHHHHHHHHHHHHhcc
Confidence            9999999999779999999999999998753

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=100.00  E-value=4.9e-61  Score=433.42  Aligned_cols=402  Identities=47%  Similarity=0.836  Sum_probs=384.3

Q ss_pred             cccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHh-cCCCCcCCCCcchHHHHHH
Q 012238           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE-RGENKEYLPIEGLAAFNKV  134 (467)
Q Consensus        56 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~-~~~~~~Y~~~~G~~~lr~a  134 (467)
                      +|.|+.++.+++..++.+.+.+.++..|.++||++|.|+++++.|++.|.|+++...+.+ ....++|.|..|++.|+++
T Consensus         3 ~s~f~~I~~a~p~~vf~~~~~y~~d~~p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~~   82 (410)
T KOG1412|consen    3 MSFFANIPVAPPIEVFKLNASYGEDLDPVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTFTKA   82 (410)
T ss_pred             cchhcCCccCChHHHHhhHHHhcccCCcceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhccccCchhhhhh
Confidence            578999999999999999999999999999999999999999999999999999888774 3566899999999999999


Q ss_pred             HHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCC-CeEEeeeecCCCCC
Q 012238          135 TAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV-PWSEYRYYDPKTVG  213 (467)
Q Consensus       135 ia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~-~~~~v~~~~~~~~~  213 (467)
                      .++.+.+.+...+++++++-||+.+||+|+.+++.+++.+.+..+|.+++|+|.++..+++..|. ++..+++.+.++-+
T Consensus        83 A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~  162 (410)
T KOG1412|consen   83 ATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKC  162 (410)
T ss_pred             hHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCce
Confidence            99999999999999999999999999999999999999988888999999999999999999994 57788988888889


Q ss_pred             CChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012238          214 LDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (467)
Q Consensus       214 ~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (467)
                      +|++.+...++.+|++..++++.+.|||||..++.|+|..|+++.++++++.++|-+|++|+.|+++.|.|.++.+++.+
T Consensus       163 ~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g  242 (410)
T KOG1412|consen  163 VDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQG  242 (410)
T ss_pred             ecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHH
Q 012238          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEW  373 (467)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~  373 (467)
                      ..++++.||+|++|++|.|+|.+.+|..++..+..        +.+||..+.+..+++||++++.++..+|+.++++++|
T Consensus       243 ~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~--------v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W  314 (410)
T KOG1412|consen  243 FELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAG--------VKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQW  314 (410)
T ss_pred             CeEEEEhhhhhhcccccccccceEEEecChhHHHH--------HHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHH
Confidence            99999999999999999999999999999999888        9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHH
Q 012238          374 KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCE  453 (467)
Q Consensus       374 ~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~  453 (467)
                      ...+..+..|++++|..|++.|. .++.||.|+.+..+.|||.|.|+++.+++.|.++|+|++.+.|||++++++..+++
T Consensus       315 ~~sik~MssRI~~MR~aLrd~L~-aL~TPGtWDHI~~QiGMFSyTGLtp~qV~~li~~h~vyLl~~GRInisGLN~~Nve  393 (410)
T KOG1412|consen  315 IQSIKTMSSRIKKMRTALRDHLV-ALKTPGTWDHITQQIGMFSYTGLTPAQVDHLIENHKVYLLSDGRINISGLNMKNVE  393 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hcCCCCcHHHHHhhccceeecCCCHHHHHHHHHhceEEEecCCcEeeeccccccHH
Confidence            99999999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 012238          454 YLADAIIDSYHNV  466 (467)
Q Consensus       454 ~~~~~l~~~l~~~  466 (467)
                      ++.++|.+++..+
T Consensus       394 yVAkAIde~Vr~~  406 (410)
T KOG1412|consen  394 YVAKAIDETVRAI  406 (410)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998754

>PTZ00376 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3e-58  Score=464.65  Aligned_cols=399  Identities=56%  Similarity=0.980  Sum_probs=327.7

Q ss_pred             cccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHH
Q 012238           58 RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE  137 (467)
Q Consensus        58 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~  137 (467)
                      .++++...+++.+.++.+..+.+.++++|||++|.|.|..+...+.+.+.+++......+...+|.|..|.++||+++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~   83 (404)
T PTZ00376          4 LFSQVPLGPPDPILGLAAAFKADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQK   83 (404)
T ss_pred             hhhcCCcCCCChHHHHHHHHhhcCCcccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHH
Confidence            46667777778888888877755556899999999744433333356677776655433334789999999999999999


Q ss_pred             HHhCCCCcccccCceeeeecCCchhHHHHHHHHH-HHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCCh
Q 012238          138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALI-ERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (467)
Q Consensus       138 ~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l-~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  216 (467)
                      ++.+..+..+++++|++.+|.|+++++.++.+++ ..+.|||+|++++|+|+.|...++..|++++.+|+.+++++++|+
T Consensus        84 ~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~  163 (404)
T PTZ00376         84 LLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDF  163 (404)
T ss_pred             HhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCH
Confidence            9877766677889998555899999999875444 345699999999999999999999999999999996555689999


Q ss_pred             hhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012238          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (467)
Q Consensus       217 ~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~  296 (467)
                      +.+++.+++..++++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++.+.+..++..+....+++
T Consensus       164 ~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~v  243 (404)
T PTZ00376        164 DGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEF  243 (404)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcE
Confidence            99999997543457889999999999999999999999999999999999999999999853111222333444445689


Q ss_pred             EEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHH
Q 012238          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAE  376 (467)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  376 (467)
                      |+++||||.|++||||+||++++++++++++.        +..++.+.....+.+++.+.|.++..+|.++.+.+.|.++
T Consensus       244 i~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~--------l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~  315 (404)
T PTZ00376        244 LVAQSFSKNMGLYGERIGALHIVCANKEEAAN--------VLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSE  315 (404)
T ss_pred             EEEEeCCCcccccccccceEEEEeCCHHHHHH--------HHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHH
Confidence            99999999999999999999644588887776        5555665555556677888999999999988777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHHHHH
Q 012238          377 MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLA  456 (467)
Q Consensus       377 l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~~~~  456 (467)
                      +++.+++++++|+.+.+.|+ +.+.+..|.+..|+||||+|++++.+++++|++++||++.|||||+++.++++++++++
T Consensus       316 ~~~~~~~~~~~r~~l~~~L~-~~~~~~~~~~~~p~gg~f~~~~~~~~~~~~L~~~~~v~v~p~~Ris~~~~~~~~~~~~~  394 (404)
T PTZ00376        316 LKEMSGRIQNMRQLLYDELK-ALGSPGDWEHIINQIGMFSFTGLTKEQVERLIEKYHIYLLDNGRISVAGLTSKNVDYVA  394 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hcCCCCcccccccCceEEEecCCCHHHHHHHHHhCCEeecCCCeEEEeccCHHhHHHHH
Confidence            88899999999999999999 87655446777899999999999999999999999999999999999877899999999


Q ss_pred             HHHHHHHHh
Q 012238          457 DAIIDSYHN  465 (467)
Q Consensus       457 ~~l~~~l~~  465 (467)
                      ++|++++..
T Consensus       395 ~~l~~~~~~  403 (404)
T PTZ00376        395 EAIHDVVRN  403 (404)
T ss_pred             HHHHHHHhc
Confidence            999999765

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=100.00  E-value=7.8e-57  Score=453.54  Aligned_cols=393  Identities=50%  Similarity=0.870  Sum_probs=322.5

Q ss_pred             ccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHH
Q 012238           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (467)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~  138 (467)
                      |+++...+++.+..+...++.+..+++|||++|.|.+++..++..+.+.+++.+.+..+....|.+..|.++||++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~   81 (396)
T PRK09257          2 FEHLEAAPADPILGLMEAFRADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQEL   81 (396)
T ss_pred             cccCCCCCCChHHHHHHHHhhCCCcCcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHH
Confidence            45666777778877777776554568999999987544333332478899988876544446899999999999999999


Q ss_pred             HhCCCCcccccCce--eeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCCh
Q 012238          139 LFGADNSVLKEQRV--ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (467)
Q Consensus       139 l~~~~~~~~~~~~i--~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  216 (467)
                      +.+.++..+++++|  ++  |+|+++|+.++.+++..+.|||+|++++|+|+.|..+++..|++++.+|+.+++++++|+
T Consensus        82 ~~~~~~~~~~~~~i~v~i--T~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~  159 (396)
T PRK09257         82 LFGADSPALAAGRVATVQ--TPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDF  159 (396)
T ss_pred             hcCCCCcccccCeEEEEe--cCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCH
Confidence            98776666678887  66  999999999985555556899999999999999999999999999999985455689999


Q ss_pred             hhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012238          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (467)
Q Consensus       217 ~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~  296 (467)
                      +.+++.+++.+.+++++++++||||||.+++.+++++|+++|++||++||+||+|.++.++. +.+..++..+....+++
T Consensus       160 ~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~-~~~~~~~~~~~~~~~~v  238 (396)
T PRK09257        160 DAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGL-EEDAYGLRAFAAAGLEL  238 (396)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccch-HHHHHHHHHHHhcCCcE
Confidence            99999987544557888889999999999999999999999999999999999999998641 11233444444445789


Q ss_pred             EEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHH
Q 012238          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAE  376 (467)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  376 (467)
                      |+++||||+|+++|||+||++++..+++.+..        +..+++...+..+.+++.+.|.++..+|.++.+.+.|.++
T Consensus       239 i~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~  310 (396)
T PRK09257        239 LVASSFSKNFGLYGERVGALSVVAEDAEEADR--------VLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAE  310 (396)
T ss_pred             EEEEEcCCcCccccccceeEEEEeCCHHHHHH--------HHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHH
Confidence            99999999999999999999643445555554        4444655555556678889999999999998777778888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHHHHH
Q 012238          377 MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLA  456 (467)
Q Consensus       377 l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~~~~  456 (467)
                      +++++++|+++|+.+.+.|+ +.+.++.+++..|+||||+|++++.+++.++++++||.+.|.|||+|++++++++++++
T Consensus       311 ~~~~r~~~~~rr~~l~~~L~-~~~~~~~~~~~~p~gg~~~w~~l~~~~~~~l~~~~~V~~~p~~ri~~~~~~~~~i~~~~  389 (396)
T PRK09257        311 LEEMRERIKAMRQLLVEALK-AKGPSRDFDFIARQRGMFSYSGLTPEQVDRLREEFGVYAVGSGRINVAGLNESNIDYVA  389 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hcCCCCCcccccccceEEEecCCCHHHHHHHHHcCCEEEcCCCeEEEeeCCHHHHHHHH
Confidence            99999999999999999999 77543346788899999999999888889999999999999999999988999999999


Q ss_pred             HHHHHHH
Q 012238          457 DAIIDSY  463 (467)
Q Consensus       457 ~~l~~~l  463 (467)
                      ++|++++
T Consensus       390 ~~i~~~~  396 (396)
T PRK09257        390 EAIAAVL  396 (396)
T ss_pred             HHHHhhC
Confidence            9998764

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-56  Score=445.56  Aligned_cols=345  Identities=20%  Similarity=0.244  Sum_probs=300.0

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCc-eeeeecCCch
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQR-VATVQGLSGT  161 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~-i~~~~t~ggt  161 (467)
                      .++|+|++|+|    +++. |+.+++++.+.+..+.. .|+|..|+++||++|++++.+.+|..+++++ |++  |+|++
T Consensus        28 ~~vi~l~iG~P----d~~~-p~~i~~a~~~a~~~~~~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiiv--t~Ga~   99 (393)
T COG0436          28 EDVIDLSIGEP----DFPT-PEHIIEAAIEALEEGGT-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIV--TAGAK   99 (393)
T ss_pred             CCEEEeCCCCC----CCCC-CHHHHHHHHHHHhcccC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEE--eCCHH
Confidence            47999999999    6665 88899999998876533 7889999999999999999999998888876 999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecC-CCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP-KTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      +|+.++  +++.+.|||+|++++|+|+.|...++.+|++++.++++.+ ++|.+|++.+++.++   ++++++++++|||
T Consensus       100 ~al~~~--~~a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~---~ktk~i~ln~P~N  174 (393)
T COG0436         100 EALFLA--FLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAIT---PKTKAIILNSPNN  174 (393)
T ss_pred             HHHHHH--HHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcC---ccceEEEEeCCCC
Confidence            999998  6677889999999999999999999999999999998544 489999999999998   5899999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      |||.+++++++++|+++|++||++||+||+|.++.|++.  ...++..+....+++|+++||||.|+|+|||+||++   
T Consensus       175 PTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~--~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v---  249 (393)
T COG0436         175 PTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGA--EHPSILELAGARDRTITINSFSKTYGMTGWRIGWVV---  249 (393)
T ss_pred             CcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCC--CcCCHhhcCCCcceEEEEecccccccccccceeEee---
Confidence            999999999999999999999999999999999999752  233333333335789999999999999999999996   


Q ss_pred             CC-HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          321 SS-SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       321 ~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                      ++ +++++.            +.+++.....+++.+.|.++..+|++++. .   ..++.+++.|+++|+.+.+.|. +.
T Consensus       250 ~~~~~l~~~------------~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~-~---~~~~~~~~~~~~rrd~l~~~l~-~~  312 (393)
T COG0436         250 GPPEELIAA------------LRKLKSYLTSCAPTPAQYAAIAALNGPQS-D---EVVEEMREEYRERRDLLVEALN-EI  312 (393)
T ss_pred             cChHHHHHH------------HHHHHHhcccCCCHHHHHHHHHHhcCccc-h---HHHHHHHHHHHHHHHHHHHHHH-hc
Confidence            55 777777            76777777889999999999999997632 1   2366777999999999999999 77


Q ss_pred             CCCCCccccc-CCcceEEecCC-----CHHHHHHHHHcccEEEeCC-------C----eEEeccCChhhHHHHHHHHHHH
Q 012238          400 KSGKDWSFIL-RQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD-------G----RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       400 g~~~~~~~~~-~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g-------g----Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                      +.   |.+.. |+|+||+|+++     +.+++.+|++++||.++||       |    |||++. +.+++++++++|.+.
T Consensus       313 ~g---~~~~~~p~Ga~Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~-~~~~l~~a~~rl~~~  388 (393)
T COG0436         313 GG---LSVVKPPEGAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLAT-SEETLEEALRRLARF  388 (393)
T ss_pred             CC---eeeccCCCeeEEEEeecCCCCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEec-CHHHHHHHHHHHHHH
Confidence            52   67777 88999999966     3578999999999999997       2    999998 679999999999999


Q ss_pred             HHhc
Q 012238          463 YHNV  466 (467)
Q Consensus       463 l~~~  466 (467)
                      ++..
T Consensus       389 ~~~~  392 (393)
T COG0436         389 LAEY  392 (393)
T ss_pred             HHhc
Confidence            8764

>PLN00175 aminotransferase family protein; Provisional

Probab=100.00  E-value=1.3e-49  Score=402.04  Aligned_cols=359  Identities=16%  Similarity=0.162  Sum_probs=294.9

Q ss_pred             cCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHH
Q 012238           60 EGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELL  139 (467)
Q Consensus        60 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l  139 (467)
                      .++...+.+.+..+.+...   .+++|||+.|.|    +.++ ++.+.+++.+.+..+ ...|.+..|.++||+++++++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~---~~~~i~l~~G~P----~~~~-~~~~~~~~~~~~~~~-~~~Y~~~~G~~~Lr~aia~~~  104 (413)
T PLN00175         34 KRLEKFKTTIFTQMSSLAI---KHGAINLGQGFP----NFDG-PDFVKEAAIQAIRDG-KNQYARGFGVPELNSAIAERF  104 (413)
T ss_pred             HHhhcCCCCHHHHHHHHhh---cCCeEecCCCCC----CCCC-CHHHHHHHHHHHhcC-CCCcCCCCCCHHHHHHHHHHH
Confidence            3444455555544444432   247999999999    4444 778899988887654 378999999999999999999


Q ss_pred             hCCCCcccccC-ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhh
Q 012238          140 FGADNSVLKEQ-RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG  218 (467)
Q Consensus       140 ~~~~~~~~~~~-~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~  218 (467)
                      ...++..++++ +|++  |+|+++++.++  +...+.|||+|++++|+|..|...++..|++++.++++++ ++.+|++.
T Consensus       105 ~~~~g~~~~~~~~I~v--t~G~~~al~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~~  179 (413)
T PLN00175        105 KKDTGLVVDPEKEVTV--TSGCTEAIAAT--ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPP-DFAVPEDE  179 (413)
T ss_pred             HHHhCCCCCCCCCEEE--eCCHHHHHHHH--HHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcc-cCCCCHHH
Confidence            88778888887 7988  99999999987  4555789999999999999999999999999999998633 48899999


Q ss_pred             HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238          219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (467)
Q Consensus       219 l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (467)
                      +++.+.   ++++++++++||||||.+++.+++++|+++|++||++||+||+|.++.++.   +..++..+....+++|+
T Consensus       180 l~~~~~---~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~---~~~s~~~~~~~~~~vi~  253 (413)
T PLN00175        180 LKAAFT---SKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEG---DHISMASLPGMYERTVT  253 (413)
T ss_pred             HHHhcC---cCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCC---cccChhhCCCCcCcEEE
Confidence            999886   467889999999999999999999999999999999999999999998753   12233333333478999


Q ss_pred             EecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                      ++||||.|++||||+||++   +++++++.            +.........+++.+.|.++..+|+++      +.+++
T Consensus       254 i~SfSK~~~~~G~RiG~~v---~~~~l~~~------------l~~~~~~~~~~~s~~~Q~a~~~~l~~~------~~~~~  312 (413)
T PLN00175        254 MNSLGKTFSLTGWKIGWAI---APPHLTWG------------VRQAHSFLTFATATPMQWAAVAALRAP------ESYYE  312 (413)
T ss_pred             EecchhhccCcchheeeeE---eCHHHHHH------------HHHHHhhccCCCCHHHHHHHHHHHhCC------HHHHH
Confidence            9999999999999999996   78888887            555555445678888999999999764      23477


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC------C-HHHHHHHHHcccEEEeCC---------C--
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL------N-KAQSDNMTNKWHVYMTKD---------G--  440 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l------~-~~~~~~ll~~~gI~v~~g---------g--  440 (467)
                      +.++.|+++|+.+.+.|+ +.|    +.+..|+||+|+|+++      + .++++++++++||.+.||         +  
T Consensus       313 ~~~~~~~~~~~~l~~~L~-~~g----~~~~~p~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~  387 (413)
T PLN00175        313 ELKRDYSAKKDILVEGLK-EVG----FKVYPSSGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKN  387 (413)
T ss_pred             HHHHHHHHHHHHHHHHHH-HCC----CeecCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCC
Confidence            889999999999999999 776    5677899999999854      2 356788888889999986         1  


Q ss_pred             --eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          441 --RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       441 --Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                        ||+|+. +++++++++++|.+.+++
T Consensus       388 ~iRls~~~-~~e~l~~~~~rL~~~~~~  413 (413)
T PLN00175        388 LVRFAFCK-DEETLRAAVERMKTKLKR  413 (413)
T ss_pred             EEEEEEcC-CHHHHHHHHHHHHHHHhC
Confidence              999997 899999999999998763

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=100.00  E-value=6.6e-49  Score=395.09  Aligned_cols=342  Identities=14%  Similarity=0.130  Sum_probs=273.8

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCC
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLS  159 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~g  159 (467)
                      .+.++|+|+.|++    ..++ ++.+.+++.+.+.......|.+..|.++||+++|+++...+|..++++ +|++  |+|
T Consensus        28 ~~~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~i--t~G  100 (388)
T PRK07366         28 AGKELIDLSLGSS----DLPA-PAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLP--LIG  100 (388)
T ss_pred             cCCCeEEeCCCCC----CCCC-CHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEE--CCC
Confidence            3457999999987    4554 678888888877544447798899999999999999988778888898 6999  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +++++.++  +...+.+||+|++++|+|+.|...++..|++++.+|+++++++.+|++.+++.+.   .+++++++++||
T Consensus       101 s~~al~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~~p~  175 (388)
T PRK07366        101 SQEGTAHL--PLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVL---AQARLMVLSYPH  175 (388)
T ss_pred             cHHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhc---ccceEEEEeCCC
Confidence            99999997  4445779999999999999999999999999999999655567889999988775   467788999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||.+++.+++++|+++|++||++||+||+|.++.+++.. ...++..+....+++|+++||||+||+||+|+||++  
T Consensus       176 NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v--  252 (388)
T PRK07366        176 NPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEV-EPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAI--  252 (388)
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCC-CCCChhhCCCCcccEEEEeecccccCCcchhheehc--
Confidence            99999999999999999999999999999999999875321 112232222233578999999999999999999995  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                       +++++++.            +.+.......+.+...+.++...|.+.      .+++++.++.++++|+.+.+.|+ ++
T Consensus       253 -~~~~li~~------------l~~~~~~~~~~~~~~~~~~a~~~l~~~------~~~l~~~~~~~~~~r~~l~~~L~-~~  312 (388)
T PRK07366        253 -GNAQLIQA------------LRQVKAVVDFNQYRGILNGAIAALTGP------QATVQQTVQIFRQRRDAFINALH-QI  312 (388)
T ss_pred             -CCHHHHHH------------HHHHHhhcccCCCHHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHHH-HC
Confidence             88888887            555544433344333333444444321      24478899999999999999998 77


Q ss_pred             CCCCCcccccCCcceEEecCCC-------HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHH
Q 012238          400 KSGKDWSFILRQIGMFSFTGLN-------KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       400 g~~~~~~~~~~~~g~f~~~~l~-------~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                      |    +.+..|++|+|+|+++.       .++++++++++||.+.||        +  ||+|+. +++++++++++|.+.
T Consensus       313 ~----~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~l~rl~~~  387 (388)
T PRK07366        313 G----WPVPLPEATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVH-DPDILEEAVERIAAF  387 (388)
T ss_pred             C----CcccCCCeeEEEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecC-CHHHHHHHHHHHHHh
Confidence            6    56677899999999652       345677777789999997        1  999987 789999999999875

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=100.00  E-value=7.6e-50  Score=377.69  Aligned_cols=363  Identities=14%  Similarity=0.095  Sum_probs=290.5

Q ss_pred             CCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHh
Q 012238           61 GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLF  140 (467)
Q Consensus        61 ~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~  140 (467)
                      ++....++...++.+...+...+.+  |++|.|    ..|+ |+.+.+++.+++.....++|.+..|.++|++++++.+.
T Consensus        11 ~l~~~~~~vw~e~~~la~e~~~~~~--LgqGfp----~~~~-P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~s   83 (420)
T KOG0257|consen   11 NLSTSKPYVWTEINRLAAEHKVPNP--LGQGFP----DFPP-PKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYS   83 (420)
T ss_pred             cccccCCcHHHHHHHHHHhcCCCCc--ccCCCC----CCCC-cHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHH
Confidence            3333344444444444433332222  999998    5665 89999999999877656899999999999999999988


Q ss_pred             CCCCccccc-CceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeee------cCCCCC
Q 012238          141 GADNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY------DPKTVG  213 (467)
Q Consensus       141 ~~~~~~~~~-~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~------~~~~~~  213 (467)
                      ..+|....+ ++|+|  |.|+.+++..+  ++..+.+||+|+|.+|.|..|...++.+|..++.++..      -..+|.
T Consensus        84 e~~~~~~~~~~eVlV--T~GA~~ai~~~--~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~  159 (420)
T KOG0257|consen   84 EFYGGLLDPDDEVLV--TAGANEAISSA--LLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWT  159 (420)
T ss_pred             HHhccccCCcccEEE--ecCchHHHHHH--HHHHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCcccc
Confidence            866665555 46999  99999999977  67789999999999999999999999999999999886      345789


Q ss_pred             CChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012238          214 LDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (467)
Q Consensus       214 ~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (467)
                      +|+++++.++.   +++++|++|+||||||.++++++|++|+++|++||+++|+||+|..+.+++.  +...+..+....
T Consensus       160 ~D~~~le~~~t---~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~--~h~r~aslPgm~  234 (420)
T KOG0257|consen  160 LDPEELESKIT---EKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGN--KHIRIASLPGMY  234 (420)
T ss_pred             CChHHHHhhcc---CCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCC--cceeeecCCchh
Confidence            99999999998   7899999999999999999999999999999999999999999999998742  223333344566


Q ss_pred             CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhh-HH-
Q 012238          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL-FD-  371 (467)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~-~~-  371 (467)
                      ++++.++||||+||++|||+||++   +++.+...            +..+........++..|.+.+.++..+.. .+ 
T Consensus       235 ertitvgS~gKtf~~TGWrlGW~i---gp~~L~~~------------~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p  299 (420)
T KOG0257|consen  235 ERTITVGSFGKTFGVTGWRLGWAI---GPKHLYSA------------LFPVHQNFVFTCPTPIQEASAAAFALELACLQP  299 (420)
T ss_pred             heEEEeccccceeeeeeeeeeeee---chHHhhhh------------HHHHhhccccccCcHHHHHHHHHHhhhhhccCC
Confidence            799999999999999999999996   78777766            66666655556666777777766654321 00 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC-----------------HHHHHHHHHcccE
Q 012238          372 EWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----------------KAQSDNMTNKWHV  434 (467)
Q Consensus       372 ~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~-----------------~~~~~~ll~~~gI  434 (467)
                      .-...+.++.+.|+++|+.|.+.|. ++|    +++..|+|++|+|.+++                 -.++.+++++.|+
T Consensus       300 ~~~y~~~~~~~~y~~krdil~k~L~-~lg----~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv  374 (420)
T KOG0257|consen  300 GGSYFITELVKEYKEKRDILAKALE-ELG----LKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGV  374 (420)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHH-hcC----CccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcE
Confidence            0002355699999999999999999 998    58999999999998653                 1346789999999


Q ss_pred             EEeCCC---------------eEEeccCChhhHHHHHHHHH
Q 012238          435 YMTKDG---------------RISLAGLSLAKCEYLADAII  460 (467)
Q Consensus       435 ~v~~gg---------------Ris~~~~~~~~i~~~~~~l~  460 (467)
                      .+.|+.               |++++. +.+.++.++++++
T Consensus       375 ~~IP~saF~s~~~~~~~~~~~r~~~~k-~~~~L~~a~e~l~  414 (420)
T KOG0257|consen  375 VVIPPSAFGSREHIKVAERLVRFCFCK-ADETLRKAIERLK  414 (420)
T ss_pred             EEeCchhcCCchhhHHHHHHHHHHHHh-hHHHHHHHHHHHh
Confidence            999871               777777 7788888888887

>PRK07681 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.1e-48  Score=392.56  Aligned_cols=339  Identities=18%  Similarity=0.191  Sum_probs=278.8

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc-CceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~gg  160 (467)
                      ++++|||+.|.|    ..++ ++.+.+++.+.+.......|. ..|.++||+++|+++...+|..+++ ++|++  |+|+
T Consensus        31 ~~~~i~l~~g~p----~~~~-~~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~i--t~G~  102 (399)
T PRK07681         31 GHKMIDLSIGNP----DMPP-ADFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLL--LMGS  102 (399)
T ss_pred             CCCeEEeCCCCC----CCCC-CHHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEE--CCCc
Confidence            458999999987    4444 778888888876543335564 5899999999999998888888888 79999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      ++++.++  +...+.+||+|++++|+|+.|...++..|++++.+|+++++++.+|++.+++.+.   ++++++++++|||
T Consensus       103 ~~al~~~--~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~~P~N  177 (399)
T PRK07681        103 QDGLVHL--PMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIA---DKAKMMILNFPGN  177 (399)
T ss_pred             HHHHHHH--HHHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhcc---ccceEEEEeCCCC
Confidence            9999997  4445779999999999999999999999999999999655567899999998886   4678999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      |||.+++.+++++|+++|+++|++||+||+|.++.+++.  ...+...+....+++|+++||||.||+||+|+||++   
T Consensus       178 PTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i---  252 (399)
T PRK07681        178 PVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGN--KPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMI---  252 (399)
T ss_pred             CcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCC--CCCChhhCCCCcccEEEEeecccccCCccceeEEEe---
Confidence            999999999999999999999999999999999987532  112222222233579999999999999999999996   


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      +++++++.            +.........+++.+.|.++..+|.+..      +++++.++.++++++.+.+.|+ +.|
T Consensus       253 ~~~~l~~~------------~~~~~~~~~~~~s~~~q~~~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~-~~g  313 (399)
T PRK07681        253 GNEEIVRA------------LTQFKSNTDYGVFLPIQKAACAALRNGA------AFCEKNRGIYQERRDTLVDGFR-TFG  313 (399)
T ss_pred             cCHHHHHH------------HHHHHhhcccCCCHHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHH-HCC
Confidence            78888887            5555544445678888999999987752      3466788899999999999999 776


Q ss_pred             CCCCcccccCCcceEEecCC-----CHHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHH
Q 012238          401 SGKDWSFILRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       401 ~~~~~~~~~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                          +++..|.+|+|+|+.+     +.+++.++++++||.+.||        |  ||+++. +++++++++++|+++
T Consensus       314 ----~~~~~p~~g~f~~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~l~~l~~~  385 (399)
T PRK07681        314 ----WNVDKPAGSMFVWAEIPKGWTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQ-DEEVLQQAVENIRNS  385 (399)
T ss_pred             ----CcccCCCeeeEEEEECCCCCCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHHh
Confidence                5677788999999865     2456778888789999997        2  999996 789999999999873

>PRK08636 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.2e-48  Score=391.59  Aligned_cols=348  Identities=14%  Similarity=0.155  Sum_probs=276.3

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCC
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLS  159 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~g  159 (467)
                      .+++.++|+.|.|    ..+. ++.+.+++.+.+.......|.+..|.++||+++|+++...++..++++ +|++  |+|
T Consensus        31 ~~~~~~~l~~g~p----~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~i--t~G  103 (403)
T PRK08636         31 AGEDIIDFSMGNP----DGPT-PQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVA--TMG  103 (403)
T ss_pred             cCCCEEEcCCcCC----CCCC-CHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEE--CCC
Confidence            3457999999988    3333 455555555544333347899999999999999999987778888887 7999  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhH----HHHHHcCCCCcEEEEe
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGM----IADIKAAPGGSFILLH  235 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l----~~~l~~~~~~~~~i~i  235 (467)
                      +++++.++  +...+.|||+|++++|+|+.|...++..|++++.++++.++++++|++.+    ++.+++...+++++++
T Consensus       104 ~~~al~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~  181 (403)
T PRK08636        104 SKEGYVHL--VQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVV  181 (403)
T ss_pred             hHHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEE
Confidence            99999998  44457799999999999999999999999999999985345688998865    4555443457889999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccce
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  315 (467)
                      ++||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+....+++|+++||||+||+||+|+||
T Consensus       182 ~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~  259 (403)
T PRK08636        182 NFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGY--KTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGF  259 (403)
T ss_pred             eCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCC--CCCChhcCCCccccEEEEEecccccCCccceeee
Confidence            99999999999999999999999999999999999999987531  1223323322235678899999999999999999


Q ss_pred             EEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012238          316 MNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL  395 (467)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l  395 (467)
                      ++   +++++++.            +.+.......+++...|.++..++++.      .++++++++.++++++.+.+.|
T Consensus       260 iv---~~~~li~~------------~~~~~~~~~~~~~~~~q~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~L  318 (403)
T PRK08636        260 VV---GNKKLVGA------------LKKIKSWLDYGMFTPIQVAATIALDGD------QSCVEEIRETYRKRRDVLIESF  318 (403)
T ss_pred             ee---CCHHHHHH------------HHHHHHHhcccCChHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHH
Confidence            95   88888887            554443333455566777777666532      2347788999999999999999


Q ss_pred             hhccCCCCCcccccCCcceEEecCCC--------HHHHHHHHHcccEEEeCC---C-------eEEeccCChhhHHHHHH
Q 012238          396 SAKDKSGKDWSFILRQIGMFSFTGLN--------KAQSDNMTNKWHVYMTKD---G-------RISLAGLSLAKCEYLAD  457 (467)
Q Consensus       396 ~~~~g~~~~~~~~~~~~g~f~~~~l~--------~~~~~~ll~~~gI~v~~g---g-------Ris~~~~~~~~i~~~~~  457 (467)
                      + +.+    +.+..|++|+|+|+.++        .+++.++++++||.+.||   |       ||+|+. ++++++++++
T Consensus       319 ~-~~~----~~~~~p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~~~  392 (403)
T PRK08636        319 A-NAG----WELQKPRASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIE-NENRIRQAAR  392 (403)
T ss_pred             H-HCC----CcccCCCcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecC-CHHHHHHHHH
Confidence            9 765    56778999999999763        355677787789999998   1       999995 8999999999


Q ss_pred             HHHHHHHhc
Q 012238          458 AIIDSYHNV  466 (467)
Q Consensus       458 ~l~~~l~~~  466 (467)
                      +|+++++.+
T Consensus       393 rl~~~l~~~  401 (403)
T PRK08636        393 NIKKFLKEL  401 (403)
T ss_pred             HHHHHHHhh
Confidence            999998764

>PTZ00377 alanine aminotransferase; Provisional

Probab=100.00  E-value=6.3e-48  Score=397.16  Aligned_cols=362  Identities=18%  Similarity=0.144  Sum_probs=282.4

Q ss_pred             CCCCcEEecCcccCC---------------CCC---------CCCchHHHHHHHHHHHhc--CCCCcCCCCcchHHHHHH
Q 012238           81 TDEKKLNLGVGAYRT---------------EEL---------QPYVLDVVKKAENLMLER--GENKEYLPIEGLAAFNKV  134 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d---------------~~~---------~p~~~~~v~~a~~~~~~~--~~~~~Y~~~~G~~~lr~a  134 (467)
                      ++.++|+|++|+|-+               ...         ....|..+.+++.+++..  .....|.+..|.++||++
T Consensus        44 ~~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~a  123 (481)
T PTZ00377         44 PFDSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLEDPSVSSLFPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKA  123 (481)
T ss_pred             CcceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhcCccccccCCHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHH
Confidence            346899999999921               100         001244666666665533  123679999999999999


Q ss_pred             HHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCC
Q 012238          135 TAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVG  213 (467)
Q Consensus       135 ia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~-~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~  213 (467)
                      +|+++...+|..+++++|++  |+|+++++.++  +...+ .|||.|++++|+|+.|...++..|++++.++++++++++
T Consensus       124 ia~~~~~~~g~~~~~~~I~i--t~Ga~~al~~~--~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~  199 (481)
T PTZ00377        124 VAAFIERRDGVPKDPSDIFL--TDGASSGIKLL--LQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWS  199 (481)
T ss_pred             HHHHHHHhcCCCCChhhEEE--cCCHHHHHHHH--HHHhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCC
Confidence            99999888888899999999  99999999998  34446 599999999999999999999999999999997666789


Q ss_pred             CChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH
Q 012238          214 LDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA  290 (467)
Q Consensus       214 ~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~  290 (467)
                      +|++.+++.++..   ..+++++++++||||||.+++.+++++|+++|++||++||+||+|.++.|++. ....++..+.
T Consensus       200 ~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~-~~~~s~~~~~  278 (481)
T PTZ00377        200 LDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGE-KPFISFRKVL  278 (481)
T ss_pred             CCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCC-CCcccHHHHH
Confidence            9999999998731   12678888889999999999999999999999999999999999999988421 1122222221


Q ss_pred             ----hc---CCeEEEEecCccC-cccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHH
Q 012238          291 ----TR---GMELLVAQSYSKN-LGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVAN  362 (467)
Q Consensus       291 ----~~---~~~~i~~~S~SK~-~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  362 (467)
                          ..   +.++|+++||||. +++||||+||++....++++++.            +.+.... ..+++.++|.++..
T Consensus       279 ~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~------------l~~~~~~-~~~~~~~~Q~a~~~  345 (481)
T PTZ00377        279 LELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQ------------IYKLASI-NLCSNVVGQLMTGL  345 (481)
T ss_pred             HhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHH------------HHHHhhe-ecCCChHHHHHHHH
Confidence                11   2369999999997 69999999999621148888887            5555433 44578889999999


Q ss_pred             HhCCh----hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC-----------------
Q 012238          363 VVGNP----ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----------------  421 (467)
Q Consensus       363 ~L~~~----~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~-----------------  421 (467)
                      +|+++    ...+.|.+++++.++.++++|+.+.+.|+ ++.   ++.+..|+||||+|+.+.                 
T Consensus       346 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~-~~~---g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~  421 (481)
T PTZ00377        346 MCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELN-KIE---GVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPD  421 (481)
T ss_pred             HhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC---CcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcH
Confidence            98642    22234556677777789999999999998 762   268889999999996431                 


Q ss_pred             HHHHHHHHHcccEEEeCCC-----------eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          422 KAQSDNMTNKWHVYMTKDG-----------RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       422 ~~~~~~ll~~~gI~v~~gg-----------Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                      .+++.++++++||.+.||.           ||||+. +++++++++++|.+++++
T Consensus       422 ~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~-~~e~l~~~l~rl~~~~~~  475 (481)
T PTZ00377        422 VLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILP-PEEQIEEMVKKIKEFHES  475 (481)
T ss_pred             HHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHH
Confidence            2346678888899999972           999994 888999999999998865

>PRK08068 transaminase; Reviewed

Probab=100.00  E-value=5e-48  Score=388.74  Aligned_cols=340  Identities=15%  Similarity=0.170  Sum_probs=275.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~gg  160 (467)
                      ++++|+|+.|.|    ..+. ++.+.+++.+.+.......|.|..|.++||+++|+++...+|..++++ +|++  |+|+
T Consensus        31 ~~~~i~l~~~~p----~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~i--t~G~  103 (389)
T PRK08068         31 GHDVINLGQGNP----DQPT-PEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAI--LFGG  103 (389)
T ss_pred             CCCeEEecCCCC----CCCC-CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEE--cCCc
Confidence            357899999987    4443 567888888877654447898899999999999999977777778888 7998  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      ++++.++  +...+.+||+|++++|+|..|...++..|++++.+|++++.++.+|++.+++.+.   .+++++++++|||
T Consensus       104 ~~~l~~~--~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~P~N  178 (389)
T PRK08068        104 KAGLVEL--PQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVA---EKAKLMYLNYPNN  178 (389)
T ss_pred             HHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhcc---ccceEEEEECCCC
Confidence            9999987  4445679999999999999999999999999999999655567889999998886   4678999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      |||.+++.+++++|+++|+++|++||+||+|.++.+++.  ...+.....+..+++++++||||.||+||+|+||++   
T Consensus       179 PTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~--~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~---  253 (389)
T PRK08068        179 PTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQ--KPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAV---  253 (389)
T ss_pred             CCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCC--CCcChhhCCCccCCEEEEecchhccCCccceeEeEe---
Confidence            999999999999999999999999999999999877531  111221222234578999999999999999999995   


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      +++++++.            +.+.......+.+...|.++..++.+.      .++++..+++++++|+.+.+.|+ ++|
T Consensus       254 ~~~~l~~~------------l~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~~r~~~~~~L~-~~g  314 (389)
T PRK08068        254 GNESVIEA------------INLLQDHLFVSLFGAIQDAAIEALLSD------QSCVAELVARYESRRNAFISACR-EIG  314 (389)
T ss_pred             cCHHHHHH------------HHHHHhhccCCCChHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHHH-HCC
Confidence            78888887            655555545566666677777777543      23467889999999999999999 876


Q ss_pred             CCCCcccccCCcceEEecCC----C-HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHH
Q 012238          401 SGKDWSFILRQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       401 ~~~~~~~~~~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                          +.+.+++||+|+|+.+    + .++.+++++++||.+.||        +  ||+++. +++++..++++|.++
T Consensus       315 ----~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~  386 (389)
T PRK08068        315 ----WEVDAPKGSFFAWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLT-DEERLREAVERIGKL  386 (389)
T ss_pred             ----CcccCCCeeEEEEEECCCCCCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcC-CHHHHHHHHHHHHHh
Confidence                5778889999999855    2 355677777689999986        1  999986 778888888888753

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=100.00  E-value=1.5e-47  Score=397.50  Aligned_cols=376  Identities=19%  Similarity=0.168  Sum_probs=287.7

Q ss_pred             cccCCCCCCCCcccchHHHhh--cCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHH
Q 012238           58 RFEGVTMAPPDPILGVSEAFK--ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVT  135 (467)
Q Consensus        58 ~~~~~~~~~~~~i~~~~~~~~--~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~ai  135 (467)
                      .+.++...+.+.+..+.+..+  +..+.++|+|++|+| +..++++ ++.+.+++.+.+..  ...|++..|.++||+++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~G~p-~~~~~~~-p~~~~~~~~~~~~~--~~~Y~~~~G~~~lReai  194 (517)
T PRK13355        119 KSHKLDNVLYDVRGPVVDEANRMEAAGTHILKLNIGNP-APFGFRT-PDEVVYDMAQQLTD--TEGYSDSKGLFSARKAI  194 (517)
T ss_pred             hhHHhhccCccHHHHHHHHHHHHHHcCCCeEEecCcCC-CcCCCCC-CHHHHHHHHHHhhc--CCCCCCCcChHHHHHHH
Confidence            445555555554543433332  234568999999988 3334443 77788888776643  36799999999999999


Q ss_pred             HHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCC
Q 012238          136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (467)
Q Consensus       136 a~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  215 (467)
                      |+++...++..+++++|++  |+|+++++.++  +...+.+||+|++++|+|+.|...++..|++++.++++++.+|.+|
T Consensus       195 a~~~~~~~~~~~~~~~I~i--t~G~~eal~~~--~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d  270 (517)
T PRK13355        195 MQYAQLKGLPNVDVDDIYT--GNGVSELINLS--MSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPD  270 (517)
T ss_pred             HHHHHhcCCCCCChhHEEE--eCcHHHHHHHH--HHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCC
Confidence            9998776666688999999  99999999998  4445789999999999999999999999999999998766678999


Q ss_pred             hhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012238          216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (467)
Q Consensus       216 ~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~  295 (467)
                      ++.+++.+.   +++++++++|||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+. ....
T Consensus       271 ~~~l~~~~~---~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~--~~~s~~~~~-~~~~  344 (517)
T PRK13355        271 IDDIRSKIT---SRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGL--EHTSIASLA-PDLF  344 (517)
T ss_pred             HHHHHHhcC---cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCC--CcccHHHhC-CCCe
Confidence            999999886   5788999999999999999999999999999999999999999999987642  222332321 2235


Q ss_pred             EEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH
Q 012238          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA  375 (467)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  375 (467)
                      +++++||||.|+++|||+||+++ .+++++++.        +...+..... ...+++.++|.++..+|.+....   .+
T Consensus       345 vi~~~S~SK~~~~~G~RiG~~i~-~~~~~~~~~--------~~~~l~~~~~-~~~~~~~~~q~a~~~aL~~~~~~---~~  411 (517)
T PRK13355        345 CVTFSGLSKSHMIAGYRIGWMIL-SGNKRIAKD--------YIEGLNMLAN-MRLCSNVPAQSIVQTALGGHQSV---KD  411 (517)
T ss_pred             EEEEecchhhccCcccceEEEEe-eCchhhHHH--------HHHHHHHHhc-CcCCcChHHHHHHHHHhcCCccH---HH
Confidence            78889999999999999999961 244554443        3333433322 23457788899999998753221   23


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC---------CHHHHHHHHHcccEEEeCCC------
Q 012238          376 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---------NKAQSDNMTNKWHVYMTKDG------  440 (467)
Q Consensus       376 ~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---------~~~~~~~ll~~~gI~v~~gg------  440 (467)
                      ++... .++.++|+++.+.|+ +++  + +++..|+|+||+|+++         +.+++.++++++||.+.||.      
T Consensus       412 ~~~~~-~~~~~~r~~l~~~L~-~~~--g-~~~~~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~  486 (517)
T PRK13355        412 YLVPG-GRVYEQRELVYNALN-AIP--G-ISAVKPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDK  486 (517)
T ss_pred             HHHHH-HHHHHHHHHHHHHHh-cCC--C-cccCCCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCC
Confidence            34444 344456899999998 762  1 6888999999999754         23567788888899999971      


Q ss_pred             ----eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          441 ----RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 ----Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                          ||+|+. ++++++.++++|.+.+...
T Consensus       487 ~~~~Ris~~~-~~~~l~~a~~rl~~~~~~~  515 (517)
T PRK13355        487 PDHFRVVYLP-RLEDLEDAMDRLADFFSYY  515 (517)
T ss_pred             cCEEEEEeCC-CHHHHHHHHHHHHHHHHHh
Confidence                999976 8899999999999998753

>PRK06855 aminotransferase; Validated

Probab=100.00  E-value=1.2e-47  Score=389.86  Aligned_cols=354  Identities=13%  Similarity=0.099  Sum_probs=279.8

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.++++|++|+| +..++++ |+.+.+++.+.+.......|.+..|.++||+++++++...+|..+++++|++  |+|++
T Consensus        31 g~~~~~~~~G~p-~~~~~~~-p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~i--t~G~~  106 (433)
T PRK06855         31 GVKITWENIGDP-IAKGEKI-PDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIF--FNGLG  106 (433)
T ss_pred             cccccccccCCC-cccCCCC-CHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEE--cCcHH
Confidence            347899999988 3223444 7888888888775444478999999999999999999888888899999999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~-~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      +++.++   +..+.|||.|++++|+|+.|.... ...|++++.+++++++++++|++.+++.++.. ++++++++++|||
T Consensus       107 ~al~~~---~~l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~-~~~~~i~l~~P~N  182 (433)
T PRK06855        107 DAIAKI---YGLLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYN-PSIAGILLINPDN  182 (433)
T ss_pred             HHHHHH---HHhcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcC-CCceEEEEECCCC
Confidence            999987   245779999999999999987653 45688999999865567889999999998642 3567888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      |||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+.. ..++|+++||||.|++||||+||++  +
T Consensus       183 PTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~--~~~sl~~~~~-~~~~I~~~S~SK~~~~pGlRiG~ii--~  257 (433)
T PRK06855        183 PTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGK--KTVPLSEVIG-DVPGIALKGISKELPWPGSRCGWIE--V  257 (433)
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCCHHHHcC-cCCeEEEecCccccCCCcceEEEEE--E
Confidence            999999999999999999999999999999999987532  2223333322 2368999999999999999999996  3


Q ss_pred             CC---HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012238          321 SS---SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA  397 (467)
Q Consensus       321 ~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~  397 (467)
                      .+   .+.+..        +...+...... ..+++.+.|.++..+|.++.+    ++++++.++.|+++++.+.+.|+ 
T Consensus       258 p~~~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~Q~a~~~~l~~~~~----~~~~~~~~~~~~~r~~~~~~~L~-  323 (433)
T PRK06855        258 YNADKDEVFKK--------YINSILNAKMI-EVCSTTLPQMAIPRIMSHPEY----KNYLKERNKRYEKRSNIAYEKLK-  323 (433)
T ss_pred             eCCchhhHHHH--------HHHHHHHhhcc-ccCCChHHHHHHHHhhcCCcH----HHHHHHHHHHHHHHHHHHHHHHh-
Confidence            21   121122        22223333222 335678899999999987644    45578899999999999999998 


Q ss_pred             ccCCCCCcccccCCcceEEecCCC--------------------------------HHHHHHHHHcccEEEeCCC-----
Q 012238          398 KDKSGKDWSFILRQIGMFSFTGLN--------------------------------KAQSDNMTNKWHVYMTKDG-----  440 (467)
Q Consensus       398 ~~g~~~~~~~~~~~~g~f~~~~l~--------------------------------~~~~~~ll~~~gI~v~~gg-----  440 (467)
                      ++.  + +.+..|+||||+|+.+.                                .+++..+++++||.+.||.     
T Consensus       324 ~~~--~-~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~  400 (433)
T PRK06855        324 DVP--G-LKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTE  400 (433)
T ss_pred             cCC--C-eeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCC
Confidence            752  2 67788999999998663                                2345577778899999982     


Q ss_pred             ----eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          441 ----RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       441 ----Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                          ||||+..+++++++++++|.+++++
T Consensus       401 ~~~~Rls~~~~~~~~i~~~~~~l~~~~~~  429 (433)
T PRK06855        401 LNGFRVTLLERDEEKFEWIYQTLAEKIEE  429 (433)
T ss_pred             CCceEEEECCCcHHHHHHHHHHHHHHHHH
Confidence                9999987899999999999999875

>PLN02187 rooty/superroot1

Probab=100.00  E-value=1.6e-47  Score=390.66  Aligned_cols=355  Identities=14%  Similarity=0.121  Sum_probs=280.4

Q ss_pred             CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           80 DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        80 ~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      ...+++|+|++|+| |....+.+++.+.+++.+.+..+....|.|..|.++||+++|+++...++..+++++|++  |+|
T Consensus        63 ~~~~~vi~l~~Gdp-~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~i--t~G  139 (462)
T PLN02187         63 DVNKTILPLGHGDP-SVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFL--TAG  139 (462)
T ss_pred             CCCCCeEECCCCCC-CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEE--eCC
Confidence            34568999999987 211112236788888888776554578999999999999999999877788889999999  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +++++.++  +...+.|||+|++++|+|+.|...++..|++++.+++.+++++++|++.+++.++   .+++++++++||
T Consensus       140 ~~~al~~~--~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~---~~~~~v~i~nP~  214 (462)
T PLN02187        140 CNQGIEIV--FESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD---ENTVAMVVINPN  214 (462)
T ss_pred             HHHHHHHH--HHHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcC---CCcEEEEEeCCC
Confidence            99999998  4445679999999999999999999999999999998655678999999998876   567899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+. ...++|+++||||.|++||||+||++  
T Consensus       215 NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~--~~~s~~~~~-~~~~vi~l~SfSK~f~~pGlRiG~~v--  289 (462)
T PLN02187        215 NPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDN--PFVSMGKFA-SIVPVLTLAGISKGWVVPGWKIGWIA--  289 (462)
T ss_pred             CCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCC--CceeHHHhc-cCCcEEEEecchhhcCCccceeEEEE--
Confidence            9999999999999999999999999999999999988642  222333332 22479999999999999999999996  


Q ss_pred             cCCHH-HHhhhhhhhHHHHHHHHHhhccCc--cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          320 CSSSD-LAARCCEVAVIQVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       320 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      +.+++ .++         +...+.......  ..+++.+.|.++..+|.+..     .+++++.++.++++|+.+.+.|+
T Consensus       290 ~~~p~~~~~---------~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~-----~~~l~~~~~~l~~~r~~l~~~L~  355 (462)
T PLN02187        290 LNDPEGVFE---------TTKVLQSIKQNLDVTPDPATIIQAALPAILEKAD-----KNFFAKKNKILKHNVDLVCDRLK  355 (462)
T ss_pred             ecCchhHHH---------HHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence            33433 222         111144433332  22457889999999886421     24477889999999999999999


Q ss_pred             hccCCCCCcccccCCcceEEecCC---------CH-HHHHHHHHcccEEEeCCC--------eEEeccCChhhHHHHHHH
Q 012238          397 AKDKSGKDWSFILRQIGMFSFTGL---------NK-AQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADA  458 (467)
Q Consensus       397 ~~~g~~~~~~~~~~~~g~f~~~~l---------~~-~~~~~ll~~~gI~v~~gg--------Ris~~~~~~~~i~~~~~~  458 (467)
                       +++.  ...+..|++|+|+|+.+         +. +++.++++++||.+.||.        ||+|+. ++++++.++++
T Consensus       356 -~~~~--~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~-~~e~l~~al~r  431 (462)
T PLN02187        356 -DIPC--VVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIGV-EAHMLEDALER  431 (462)
T ss_pred             -hCCC--CcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEeCC-CHHHHHHHHHH
Confidence             7642  11234688999999853         22 557788788899999982        999998 78999999999


Q ss_pred             HHHHHHh
Q 012238          459 IIDSYHN  465 (467)
Q Consensus       459 l~~~l~~  465 (467)
                      |.+++++
T Consensus       432 L~~~l~~  438 (462)
T PLN02187        432 LKGFCTR  438 (462)
T ss_pred             HHHHHHH
Confidence            9999865

>PRK06207 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-47  Score=387.37  Aligned_cols=345  Identities=17%  Similarity=0.177  Sum_probs=278.9

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc-CceeeeecCCch
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSGT  161 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~ggt  161 (467)
                      .+.|+|+.|.+    ....+++.+.+++.+.+.......|.+..|.++||+++++++...+|..+++ ++|++  |+|++
T Consensus        39 ~~~i~l~~g~~----~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~i--t~Ga~  112 (405)
T PRK06207         39 GRPVDFSHGDV----DAHEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELII--TPGTQ  112 (405)
T ss_pred             CCceecCCcCC----CCCCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEE--eCCcH
Confidence            37899999988    2212367778887777654434679889999999999999998777777788 89999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeee---cCCCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY---DPKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~---~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p  238 (467)
                      +++.++  +...+.+||+|++++|+|+.|...++..|++++.++++   .++++++|++.+++.++   .+++++++++|
T Consensus       113 ~al~~~--~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~~P  187 (405)
T PRK06207        113 GALFLA--VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFK---AGVRVFLFSNP  187 (405)
T ss_pred             HHHHHH--HHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhh---hcCeEEEECCC
Confidence            999997  44457799999999999999999999999999999875   23468899999999887   46778899999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEE
Q 012238          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (467)
Q Consensus       239 ~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (467)
                      |||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+....+++++++||||.|++||+|+||++ 
T Consensus       188 ~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~--~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii-  264 (405)
T PRK06207        188 NNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGT--SYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAF-  264 (405)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCchhcCCCCcCcEEEEecchhhccCcccceEEEE-
Confidence            99999999999999999999999999999999999987532  112222222234689999999999999999999995 


Q ss_pred             ecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012238          319 VCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK  398 (467)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~  398 (467)
                        ++++++++            +.........+.+.+.|.++..+|+++.      .++++..++++++|+.+.+.|+ .
T Consensus       265 --~~~~l~~~------------~~~~~~~~~~~~~~~~q~a~~~~l~~~~------~~~~~~~~~~~~~r~~l~~~L~-~  323 (405)
T PRK06207        265 --GSPAIIDR------------MEKLQAIVSLRAAGYSQAVLRTWFSEPD------GWMKDRIARHQAIRDDLLRVLR-G  323 (405)
T ss_pred             --cCHHHHHH------------HHHHHhHhccCCCHHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHh-c
Confidence              78888887            6555555455677788999988887531      1244566677888999999998 7


Q ss_pred             cCCCCCcccccCCcceEEecCCC------HHHHHHHHHcccEEEeCCC----------eEEeccCChhhHHHHHHHHHHH
Q 012238          399 DKSGKDWSFILRQIGMFSFTGLN------KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       399 ~g~~~~~~~~~~~~g~f~~~~l~------~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                      +.   .+++..|++|+|+|+.+.      .++.+.+++++||.+.||.          ||||+. +++++++++++|.++
T Consensus       324 ~~---~~~~~~p~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~-~~~~l~~al~rl~~~  399 (405)
T PRK06207        324 VE---GVFVRAPQAGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ-DHAAAVAAAERIAQL  399 (405)
T ss_pred             CC---CceecCCCeeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC-CHHHHHHHHHHHHHH
Confidence            62   167778999999998753      3456677767899999971          999998 789999999999999


Q ss_pred             HHhc
Q 012238          463 YHNV  466 (467)
Q Consensus       463 l~~~  466 (467)
                      ++++
T Consensus       400 l~~~  403 (405)
T PRK06207        400 IERY  403 (405)
T ss_pred             HHHh
Confidence            8764

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=1.3e-47  Score=387.34  Aligned_cols=364  Identities=15%  Similarity=0.141  Sum_probs=282.9

Q ss_pred             hHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCce
Q 012238           73 VSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRV  152 (467)
Q Consensus        73 ~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i  152 (467)
                      +.+.+.++.++++|+|++|+|-....+++ ++.+.+++.+.+.......|.|..|.++||+++++++...+|..+++++|
T Consensus        22 ~~~~~~~~~~~~~i~l~~G~p~~~~~~~~-p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I  100 (409)
T PLN00143         22 LKENFNEDDHRLAISFGFGDPSCFECFRT-TNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDV  100 (409)
T ss_pred             HHHhcccCCCCceeeCCCCCCCCCCCCCC-CHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhE
Confidence            33445566778999999999811112554 88889998888765444679999999999999999998888888899999


Q ss_pred             eeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEE
Q 012238          153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (467)
Q Consensus       153 ~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~  232 (467)
                      ++  |+|+++++.++  +...+.+||.|++++|+|+.|...++..|++++.+++.+++++.+|++.+++.++   .++++
T Consensus       101 ~i--t~G~~~al~~~--~~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~  173 (409)
T PLN00143        101 YL--TLGCKHAAEII--IKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIAD---ENTIA  173 (409)
T ss_pred             EE--ecChHHHHHHH--HHHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcc---cCCEE
Confidence            99  99999999998  4445679999999999999999999999999999998655678899999998876   56778


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCc
Q 012238          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER  312 (467)
Q Consensus       233 i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R  312 (467)
                      ++++|||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+ ...+++|+++||||.|++||+|
T Consensus       174 ~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~--~~~~~~~~-~~~~~vi~~~SfSK~f~~pGlR  250 (409)
T PLN00143        174 MVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSK--PFVPMGLF-ASIVPVITLGSISKRWMIPGWG  250 (409)
T ss_pred             EEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCC--CCcchhhh-cccCcEEEEccchhhcCCCccc
Confidence            88899999999999999999999999999999999999999988531  11222222 3445899999999999999999


Q ss_pred             cceEEEecC-CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012238          313 IGAMNVVCS-SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL  391 (467)
Q Consensus       313 iG~~~~v~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l  391 (467)
                      +||++  +. ++.+++.      .++...+.+.... ...++.+.|.++..+|.+..     ...+++.+++++++++.+
T Consensus       251 vG~~v--~~~p~~~~~~------~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~~  316 (409)
T PLN00143        251 LGWLV--TCDPSGLLQI------CEIADSIKKALNP-APFPPTFIQAAIPEILEKTT-----EDFFSKTINILRAALAFC  316 (409)
T ss_pred             eEEEE--eeCchhhhhh------HHHHHHHHHHHhc-cCCCCchHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHHH
Confidence            99996  43 3333321      0012224333322 22346778899988886521     223667788888888989


Q ss_pred             HHHhhhccCCCCCcccccCCcceEEecCCC----------HHHHHHHHHcccEEEeCCC--------eEEeccCChhhHH
Q 012238          392 FDSLSAKDKSGKDWSFILRQIGMFSFTGLN----------KAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCE  453 (467)
Q Consensus       392 ~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~----------~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~~~i~  453 (467)
                      .+.|+ +++.  ......|+||+|+|+.+.          .+++.++++++||.+.||.        ||+|+. ++++++
T Consensus       317 ~~~L~-~~~~--~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~-~~~~l~  392 (409)
T PLN00143        317 YDKLK-EIPC--IMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAV-EQSSLE  392 (409)
T ss_pred             HHHHh-cCCC--CCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcC-CHHHHH
Confidence            99998 7642  111246889999998763          2456677778899999982        999997 789999


Q ss_pred             HHHHHHHHHHHh
Q 012238          454 YLADAIIDSYHN  465 (467)
Q Consensus       454 ~~~~~l~~~l~~  465 (467)
                      +++++|.+++++
T Consensus       393 ~al~rl~~~l~~  404 (409)
T PLN00143        393 DGLGRLKSFCGR  404 (409)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998865

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=100.00  E-value=1.7e-47  Score=385.73  Aligned_cols=357  Identities=17%  Similarity=0.150  Sum_probs=283.8

Q ss_pred             CCCCcccchHHHhh---cCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhC
Q 012238           65 APPDPILGVSEAFK---ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFG  141 (467)
Q Consensus        65 ~~~~~i~~~~~~~~---~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~  141 (467)
                      .+++.+..+.+.++   +..+.++|+|++|+|    .+++ ++.+.+++.+.+..  ...|.+..|.++||+++|+++..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p----~~~~-~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~   80 (396)
T PRK09147          8 LQPYPFEKLRALFAGVTPPADLPPISLSIGEP----KHPT-PAFIKDALAANLDG--LASYPTTAGLPALREAIAAWLER   80 (396)
T ss_pred             CCcchHHHHHHHHHhhhhccCCCeEecCCCCC----CCCC-CHHHHHHHHHHhhh--hcCCCCCCCCHHHHHHHHHHHHH
Confidence            34445555555543   234568999999998    4444 77888888877642  47898899999999999999987


Q ss_pred             CCCcc-cccC-ceeeeecCCchhHHHHHHHHHHHhCC---CCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCCh
Q 012238          142 ADNSV-LKEQ-RVATVQGLSGTGSLRLAAALIERYFP---GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (467)
Q Consensus       142 ~~~~~-~~~~-~i~~~~t~ggt~al~l~~~~l~~~~~---gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  216 (467)
                      .+|.. ++++ +|++  |+|+++++.++  +...+.|   ||.|++++|+|..|..+++..|++++.+|+++++++++|+
T Consensus        81 ~~g~~~~~~~~~i~i--t~G~~~al~~~--~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~  156 (396)
T PRK09147         81 RYGLPALDPATQVLP--VNGSREALFAF--AQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDF  156 (396)
T ss_pred             HhCCCcCCccceEEE--CCChHHHHHHH--HHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCH
Confidence            77877 7885 8999  99999999997  4445678   8999999999999999999999999999996556789999


Q ss_pred             hhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH----hc
Q 012238          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA----TR  292 (467)
Q Consensus       217 ~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~----~~  292 (467)
                      +.+++.+.   .++++++++|||||||.+++.+++++|+++|++||++||+||+|.++.+++............    +.
T Consensus       157 ~~l~~~~~---~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  233 (396)
T PRK09147        157 DAVPAEVW---ARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDD  233 (396)
T ss_pred             HHHHHHHh---hccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccc
Confidence            99998876   467888899999999999999999999999999999999999999998753111111111111    12


Q ss_pred             CCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHH
Q 012238          293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDE  372 (467)
Q Consensus       293 ~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~  372 (467)
                      .+++|+++||||.|+++|+|+||++   +++++++.            +.+.......+++.+.|.++...+.+.     
T Consensus       234 ~~~vi~~~S~SK~~~~~GlRiG~~~---~~~~l~~~------------~~~~~~~~~~~~~~~~q~a~~~~~~~~-----  293 (396)
T PRK09147        234 FKRLVVFHSLSKRSNVPGLRSGFVA---GDAALLKK------------FLLYRTYHGCAMPPAVQAASIAAWNDE-----  293 (396)
T ss_pred             cccEEEEeccccccCCccceeeeec---CCHHHHHH------------HHHHhhhcccCCCHHHHHHHHHHhcch-----
Confidence            3689999999999999999999995   78888877            554444334467778888877776542     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC---CHHHHHHHHHcccEEEeCC----------
Q 012238          373 WKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKD----------  439 (467)
Q Consensus       373 ~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~g----------  439 (467)
                        +++++.++.++++|+.+.+.|+ +.     +.+..|++|+|+|+++   +.++++++++++||.+.||          
T Consensus       294 --~~~~~~~~~~~~~~~~~~~~L~-~~-----~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~  365 (396)
T PRK09147        294 --AHVRENRALYREKFDAVTPILA-PV-----LDVQLPDAGFYLWAKVPGDDTEFARRLYADYNVTVLPGSYLAREAHGV  365 (396)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHH-Hh-----cCCCCCCeeEEEEEECCCCHHHHHHHHHHhCCEEEeCCccccccccCC
Confidence              3477889999999999999998 64     3456789999999976   3456778887789999875          


Q ss_pred             ----C--eEEeccCChhhHHHHHHHHHHHHH
Q 012238          440 ----G--RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       440 ----g--Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                          +  ||+|+. +++++++++++|+++++
T Consensus       366 ~~~~~~iRi~~~~-~~~~l~~~l~rl~~~~~  395 (396)
T PRK09147        366 NPGAGRVRIALVA-PLAECVEAAERIVDFCR  395 (396)
T ss_pred             CCCCCeEEEEecC-CHHHHHHHHHHHHHHhc
Confidence                1  999998 78899999999998764

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=5.9e-47  Score=384.04  Aligned_cols=355  Identities=16%  Similarity=0.167  Sum_probs=283.2

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.++|+|++|+|.-...+++ ++.+.+++.+.+..+....|.+..|.+++|+++++++...++..+++++|++  |+|++
T Consensus        51 ~~~~i~l~~G~P~~~~~~~~-~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~i--t~G~~  127 (430)
T PLN00145         51 PRPVLPLGHGDPSAFPCFRT-APEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYL--TAGCA  127 (430)
T ss_pred             CCCeeeCCCCCCCCCCCCCC-CHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEE--eCCHH
Confidence            45899999998821112333 7788999988876544468998999999999999999888888889999999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      ++++++  +.....|||+|++++|+|+.|...+...|++++.+++.+++++.+|++.+++.++   ++++++++++||||
T Consensus       128 ~al~l~--~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~P~NP  202 (430)
T PLN00145        128 QAIEII--MSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALAD---ENTVAMVIINPNNP  202 (430)
T ss_pred             HHHHHH--HHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhC---cCceEEEEeCCCCC
Confidence            999998  3334679999999999999999999999999999998656678999999998886   57789999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|+++|+++|++||+||+|.++.+++.  ...++..+ ....++|+++||||.|++||||+||++. ..
T Consensus       203 tG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~--~~~~~~~~-~~~~~vi~~~S~SK~~~~pG~RlG~iv~-~~  278 (430)
T PLN00145        203 CGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSK--PFVPMGVF-GEVAPVLTLGSISKRWVVPGWRLGWIAT-CD  278 (430)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCC--Cccchhhh-cccCcEEEEeccccccCCCCeeEEEEEE-ec
Confidence            99999999999999999999999999999999988641  22223222 3346899999999999999999999961 12


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++.+++.      .++...++.... ...+++.+.|.++..+|.+..     .++++++++.++++|+.+.+.|+ +++ 
T Consensus       279 ~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~L~-~~~-  344 (430)
T PLN00145        279 PNGILKE------TKVVDSIRNYLN-ISTDPATFVQGAIPQIIANTK-----EEFFTKTLGLLKETADICYEKIK-EIK-  344 (430)
T ss_pred             chhhhhh------hHHHHHHHHHhc-ccCCCCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHHHHHHh-cCC-
Confidence            4444332      001222444332 344677889999988887521     24477889999999999999998 752 


Q ss_pred             CCCccc-ccCCcceEEecCCC----------HHHHHHHHHcccEEEeCC---C-----eEEeccCChhhHHHHHHHHHHH
Q 012238          402 GKDWSF-ILRQIGMFSFTGLN----------KAQSDNMTNKWHVYMTKD---G-----RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       402 ~~~~~~-~~~~~g~f~~~~l~----------~~~~~~ll~~~gI~v~~g---g-----Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                       + +.+ ..|+|++|+|++++          .+++.++++++||.+.||   |     ||+|+. ++++++.++++|.+.
T Consensus       345 -g-~~~~~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~-~~~~l~~al~rl~~~  421 (430)
T PLN00145        345 -C-ITCPHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAI-DPPSLEDGLERLKSF  421 (430)
T ss_pred             -C-CCCCcCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCC-CHHHHHHHHHHHHHH
Confidence             1 444 47999999998652          346778888889999998   2     999997 889999999999998


Q ss_pred             HHh
Q 012238          463 YHN  465 (467)
Q Consensus       463 l~~  465 (467)
                      +.+
T Consensus       422 ~~~  424 (430)
T PLN00145        422 CLR  424 (430)
T ss_pred             HHH
Confidence            865

>PLN02656 tyrosine transaminase

Probab=100.00  E-value=3e-47  Score=384.87  Aligned_cols=351  Identities=17%  Similarity=0.136  Sum_probs=283.4

Q ss_pred             CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           80 DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        80 ~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      ..+.++|+|++|+|--...+++ ++.+++++.+.+.......|.|..|.+++|+++++++...+|..+++++|++  |+|
T Consensus        28 ~~~~~~i~l~~G~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G  104 (409)
T PLN02656         28 ENGKRVISLGMGDPTAYSCFHT-THVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFI--TSG  104 (409)
T ss_pred             ccCCeeeecCCCCCCcCCCCCC-CHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEE--eCC
Confidence            3456899999999811111343 7889999988876554478999999999999999999887788888999999  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +++++.++  +...+.+||+|++++|+|+.|...++..|++++.+++.+++++.+|++.+++.++   .+++++++++||
T Consensus       105 ~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~P~  179 (409)
T PLN02656        105 CTQAIDVA--LSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALAD---QNTVALVIINPG  179 (409)
T ss_pred             hHHHHHHH--HHHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhc---cCceEEEEECCC
Confidence            99999997  4445679999999999999999999999999999998655577899999998886   567888899999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||.+++.+++++|+++|+++|++||+||+|.++.+++.  ...++..+ +...++|+++||||.|++||+|+||++  
T Consensus       180 NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~vi~~~SfSK~f~~pGlRiG~~i--  254 (409)
T PLN02656        180 NPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSN--PFVPMGVF-GSIVPVLTLGSLSKRWIVPGWRLGWFV--  254 (409)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC--CcccHHHh-cccCcEEEEcccchhccCcceeEEEEE--
Confidence            9999999999999999999999999999999999988642  11222222 344689999999999999999999996  


Q ss_pred             cC-------CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          320 CS-------SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  392 (467)
Q Consensus       320 ~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~  392 (467)
                      +.       ++++++.            +.+.... ..+++.+.|.++..+|++..     ..++++.+++++++|+.+.
T Consensus       255 ~~~~~~~~~~~~~~~~------------~~~~~~~-~~~~s~~~q~a~~~~l~~~~-----~~~~~~~~~~~~~~r~~~~  316 (409)
T PLN02656        255 TTDPSGSFRDPKIVER------------IKKYFDI-LGGPATFIQAAVPTILEQTD-----ESFFKKTINILKQSSDICC  316 (409)
T ss_pred             EeCcccccccHHHHHH------------HHHHHhh-hcCCCHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHHHH
Confidence            33       3466666            5444333 34577889999999987521     2346788889999999999


Q ss_pred             HHhhhccCCCCCcc-cccCCcceEEecCCC---------H-HHHHHHHHcccEEEeCCC--------eEEeccCChhhHH
Q 012238          393 DSLSAKDKSGKDWS-FILRQIGMFSFTGLN---------K-AQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCE  453 (467)
Q Consensus       393 ~~l~~~~g~~~~~~-~~~~~~g~f~~~~l~---------~-~~~~~ll~~~gI~v~~gg--------Ris~~~~~~~~i~  453 (467)
                      +.|+ .++.   +. ...|+||+|+|+.++         . +++.++++++||.+.||.        ||+|+. ++++++
T Consensus       317 ~~L~-~~~~---~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~-~~e~l~  391 (409)
T PLN02656        317 DRIK-EIPC---ITCPHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFAA-DPSSLE  391 (409)
T ss_pred             HHHh-hCCC---CcCCcCCCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCC-CHHHHH
Confidence            9998 7642   22 357899999998652         2 456677778899999982        999997 899999


Q ss_pred             HHHHHHHHHHHhc
Q 012238          454 YLADAIIDSYHNV  466 (467)
Q Consensus       454 ~~~~~l~~~l~~~  466 (467)
                      +++++|++++.+.
T Consensus       392 eal~rl~~~~~~~  404 (409)
T PLN02656        392 EALGRIKSFYLRH  404 (409)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988753

>PRK07682 hypothetical protein; Validated

Probab=100.00  E-value=1.9e-47  Score=383.32  Aligned_cols=341  Identities=16%  Similarity=0.161  Sum_probs=281.5

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCCch
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (467)
                      ++.|+|+.|.|    ..++ ++.+.+++.+.+... ...|.+..|.+++|+++|+++...+|..++++ +|++  |+|++
T Consensus        20 ~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~--t~G~~   91 (378)
T PRK07682         20 EGVISLGVGEP----DFVT-PWNVREASIRSLEQG-YTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIV--TVGAS   91 (378)
T ss_pred             CCeEEeCCCCC----CCCC-CHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCChH
Confidence            47899999998    4443 566788887776543 36798889999999999999987777777775 7999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      +++.++  +...+.|||+|++++|+|+.|...++..|.+++.++++.++++++|++.+++.+.   ++++++++++||||
T Consensus        92 ~al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~NP  166 (378)
T PRK07682         92 QALDVA--MRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAIT---AKTKAILLCSPNNP  166 (378)
T ss_pred             HHHHHH--HHHhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcC---cccEEEEEECCCCC
Confidence            999997  4445779999999999999999999999999999988544568899999999886   46788888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|+++|++||+++|+||+|.++.++.   ...++..+.+..+++++++||||.|++||+|+||++   +
T Consensus       167 tG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~---~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~---~  240 (378)
T PRK07682        167 TGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDE---AYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIA---A  240 (378)
T ss_pred             cCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCC---CCCChhhcccccCCEEEEecCcccccChhhhhhhhh---c
Confidence            9999999999999999999999999999999998863   112232333334689999999999999999999995   7


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +.........+++.+.|.++..+|++..      .++++.++.++++|+.+.+.|+ ++| 
T Consensus       241 ~~~~i~~------------l~~~~~~~~~~~~~~~q~a~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~L~-~~~-  300 (378)
T PRK07682        241 PVYFSEA------------MLKIHQYSMMCAPTMAQFAALEALRAGN------DDVIRMRDSYRKRRNFFVTSFN-EIG-  300 (378)
T ss_pred             CHHHHHH------------HHHHHHhhccCCCHHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHHH-HCC-
Confidence            8888887            5444443445678889999998887642      2367888999999999999999 876 


Q ss_pred             CCCcccccCCcceEEecCC-----C-HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          402 GKDWSFILRQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                         +.+..|+||+|+|..+     + .++.+++++++||.+.||        +  |||++. +++++++++++|++++++
T Consensus       301 ---~~~~~p~g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~  376 (378)
T PRK07682        301 ---LTCHVPGGAFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT-SLEQLQEAMKRMKRFVEN  376 (378)
T ss_pred             ---CccCCCCeeEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC-CHHHHHHHHHHHHHHHhh
Confidence               5677899999999743     3 345667777789999987        1  999998 789999999999999886


Q ss_pred             c
Q 012238          466 V  466 (467)
Q Consensus       466 ~  466 (467)
                      +
T Consensus       377 ~  377 (378)
T PRK07682        377 K  377 (378)
T ss_pred             c
Confidence            5

>PRK06348 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2e-47  Score=383.60  Aligned_cols=353  Identities=14%  Similarity=0.156  Sum_probs=281.3

Q ss_pred             CCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCc
Q 012238           66 PPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNS  145 (467)
Q Consensus        66 ~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~  145 (467)
                      ....+.++.+..+.  .+++|||+.|.|    ..++ ++.+.++........ ...|.+..|.++||+++++++...++.
T Consensus        14 ~~~~~~~~~~~~~~--~~~~i~l~~g~p----~~~~-~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~~~   85 (384)
T PRK06348         14 EVNIMAEIATLAKK--FPDIIDLSLGDP----DLIT-DESIINAAFEDAKKG-HTRYTDSGGDVELIEEIIKYYSKNYDL   85 (384)
T ss_pred             CccHHHHHHHHHHh--cCCcEEcCCCCC----CCCC-CHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCC
Confidence            33344444444332  247899999988    4444 555655444433333 377999999999999999999877788


Q ss_pred             ccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc
Q 012238          146 VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA  225 (467)
Q Consensus       146 ~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~  225 (467)
                      .+++++|++  |+|+++++.++  +...+.+||+|++++|+|..|...++..|++++.+++.+++++.+|++.+++.++ 
T Consensus        86 ~~~~~~i~i--t~G~~~al~~~--~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-  160 (384)
T PRK06348         86 SFKRNEIMA--TVGACHGMYLA--LQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALIT-  160 (384)
T ss_pred             CCChhhEEE--cCChHHHHHHH--HHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhC-
Confidence            888999999  99999999998  4445779999999999999999999999999999987655677899999999886 


Q ss_pred             CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC
Q 012238          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (467)
Q Consensus       226 ~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (467)
                        ++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.++.   ...++..+....+++|+++||||.
T Consensus       161 --~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~---~~~~~~~~~~~~~~vi~~~SfSK~  235 (384)
T PRK06348        161 --SKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE---DFVPMATLAGMPERTITFGSFSKD  235 (384)
T ss_pred             --cCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCC---CccchhhcCCCcCcEEEEecchhc
Confidence              466788889999999999999999999999999999999999999998763   122232332235689999999999


Q ss_pred             cccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238          306 LGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  385 (467)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~  385 (467)
                      +++||+|+||++   +++++++.            +.........+++.+.|.++..+|.+.      ++++++.++.++
T Consensus       236 ~~l~GlRiG~~v---~~~~~~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~  294 (384)
T PRK06348        236 FAMTGWRIGYVI---APDYIIET------------AKIINEGICFSAPTISQRAAIYALKHR------DTIVPLIKEEFQ  294 (384)
T ss_pred             cCCccccceeee---cCHHHHHH------------HHHHHHhccCCCCHHHHHHHHHHHhCc------HHHHHHHHHHHH
Confidence            999999999996   67877777            665555545567888999998888653      344678889999


Q ss_pred             HHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-----C-HHHHHHHHHcccEEEeCCC----------eEEeccCCh
Q 012238          386 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSL  449 (467)
Q Consensus       386 ~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~  449 (467)
                      ++++.+.+.|+ .++  + +.+..|+||||+|+.+     + .++++.+++++||.+.||.          ||+++. ++
T Consensus       295 ~r~~~~~~~L~-~~~--~-~~~~~p~gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~  369 (384)
T PRK06348        295 KRLEYAYKRIE-SIP--N-LSLHPPKGSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTV-GI  369 (384)
T ss_pred             HHHHHHHHHHh-cCC--C-ceeccCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecC-CH
Confidence            99999999998 753  1 5777899999999754     2 3456777777899999872          999986 88


Q ss_pred             hhHHHHHHHHHHH
Q 012238          450 AKCEYLADAIIDS  462 (467)
Q Consensus       450 ~~i~~~~~~l~~~  462 (467)
                      ++++.++++|+++
T Consensus       370 ~~l~~al~~l~~~  382 (384)
T PRK06348        370 EVLEEAFNRIEKM  382 (384)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998764

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=100.00  E-value=2.9e-47  Score=382.83  Aligned_cols=340  Identities=19%  Similarity=0.166  Sum_probs=274.8

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCC
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLS  159 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~g  159 (467)
                      .++++|+|+.|.|    ..++ ++.+.+++.+.+.......|.+..|.++||+++++++...+|..++++ +|++  |+|
T Consensus        29 ~~~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~--t~G  101 (385)
T PRK09276         29 RGVDVISLGIGDP----DLPT-PDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVIS--LIG  101 (385)
T ss_pred             cCCCEEEecCCCC----CCCC-CHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--ccC
Confidence            3467999999987    4443 678888888877543346798889999999999999987777777776 5888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +++++.++  +...+.+||+|++++|+|+.|...++..|++++.++++++.++.+|++.+++.+.   .+++++++++||
T Consensus       102 ~~~~i~~~--~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~---~~~~~v~l~~p~  176 (385)
T PRK09276        102 SKEGIAHI--PLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVA---KKAKLMFINYPN  176 (385)
T ss_pred             cHHHHHHH--HHHhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcc---ccceEEEEeCCC
Confidence            99999997  3344679999999999999999999999999999998655567789999988776   467889999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+....+++|+++||||.||++|+|+||++  
T Consensus       177 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i--  252 (385)
T PRK09276        177 NPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGY--KPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAV--  252 (385)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCC--CCCChhccCCCcCCEEEEecchhhcCCcchhheeee--
Confidence            9999999999999999999999999999999999987531  122222222223578999999999999999999995  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                       +++++++.            +.+.......+++...|.++..+|.+.      ..++++.+++++++|+.+.+.|+ +.
T Consensus       253 -~~~~l~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~  312 (385)
T PRK09276        253 -GNADLIAG------------LGKVKSNVDSGVFQAIQEAGIAALNGP------QEVVEELRKIYQERRDILVEGLR-KL  312 (385)
T ss_pred             -CCHHHHHH------------HHHHHhhccCCCCHHHHHHHHHHHcCc------HHHHHHHHHHHHHHHHHHHHHHH-hC
Confidence             78888887            555444444556677888888888652      34467888999999999999999 77


Q ss_pred             CCCCCcccccCCcceEEecCCC-----HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHH
Q 012238          400 KSGKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIID  461 (467)
Q Consensus       400 g~~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~  461 (467)
                      +    +.+..+++|+|+|+.+.     .++++++++++||.+.||        +  ||+|+. +++++..++++|.+
T Consensus       313 ~----~~~~~~~~~~~~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~  384 (385)
T PRK09276        313 G----LEVEPPKATFYVWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTV-PDERIEEAVERIKK  384 (385)
T ss_pred             C----CcccCCCcceEEEEECCCCCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCC-CHHHHHHHHHHHhh
Confidence            6    56778889999998652     355778887789999997        2  999986 78888888888764

>PRK09148 aminotransferase; Validated

Probab=100.00  E-value=4.6e-47  Score=383.07  Aligned_cols=344  Identities=16%  Similarity=0.159  Sum_probs=275.4

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCC
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLS  159 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~g  159 (467)
                      .++++|+|+.|.|    ..++ ++.+.+++.+.+.......|.+..|.++||+++|+++...+|..++++ +|++  |+|
T Consensus        28 ~~~~~i~l~~~~p----~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~i--t~G  100 (405)
T PRK09148         28 AGADIIDLGMGNP----DLPT-PQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVA--TLG  100 (405)
T ss_pred             cCCCeEEcCCCCC----CCCC-CHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--cCC
Confidence            3457899999987    4444 677788887776443347899999999999999999977667777887 8999  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +++++.++  +...+.+||+|++++|+|+.|...++..|++++.++++++..+   ++.+++.++...++++++++++||
T Consensus       101 ~~~al~~~--~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~---~~~l~~~~~~~~~~~~~v~l~~P~  175 (405)
T PRK09148        101 SKEGFANM--AQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEF---FPALERAVRHSIPKPIALIVNYPS  175 (405)
T ss_pred             hHHHHHHH--HHHhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCCC---ccCHHHHHhhccccceEEEEeCCC
Confidence            99999998  3445679999999999999999999999999999998644333   344555554333577899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||.+++.+++++|+++|++||++||+||+|.++.++..  ...++..+....+++++++||||.|++||+|+||++  
T Consensus       176 NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~--~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v--  251 (405)
T PRK09148        176 NPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGN--PPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAV--  251 (405)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCC--CCCChhhCCCccCcEEEEeccccccCCcchheeeee--
Confidence            9999999999999999999999999999999999987531  112222221223468899999999999999999996  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                       +++++++.            +.+.......+++.+.|.++..+|++.      .+++++.++.++++|+.+.+.|+ ++
T Consensus       252 -~~~~~i~~------------l~~~~~~~~~~~~~~~q~~~~~~L~~~------~~~~~~~~~~~~~~r~~l~~~L~-~~  311 (405)
T PRK09148        252 -GNERLIAA------------LTRVKSYLDYGAFTPIQVAATAALNGP------QDCIAEMRELYKKRRDVLVESFG-RA  311 (405)
T ss_pred             -CCHHHHHH------------HHHHHHHhccCCChHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHHH-Hc
Confidence             78888887            655555444566778899999888754      24477889999999999999999 77


Q ss_pred             CCCCCcccccCCcceEEecCCC--------HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHH
Q 012238          400 KSGKDWSFILRQIGMFSFTGLN--------KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIID  461 (467)
Q Consensus       400 g~~~~~~~~~~~~g~f~~~~l~--------~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~  461 (467)
                      +    +.+..|++|+|+|+.+.        .++++.+++++||.+.||        +  ||+++. +.+++++++++|.+
T Consensus       312 ~----~~~~~p~~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~-~~~~l~~al~~l~~  386 (405)
T PRK09148        312 G----WDIPPPAASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVE-NEQRIRQAARNIKR  386 (405)
T ss_pred             C----CccCCCCeeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence            6    56677899999998652        355677787789999997        1  999985 88999999999998


Q ss_pred             HHHh
Q 012238          462 SYHN  465 (467)
Q Consensus       462 ~l~~  465 (467)
                      ++++
T Consensus       387 ~l~~  390 (405)
T PRK09148        387 FLSS  390 (405)
T ss_pred             HHHH
Confidence            8764

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=100.00  E-value=3.9e-47  Score=381.70  Aligned_cols=340  Identities=19%  Similarity=0.161  Sum_probs=275.6

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCC
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLS  159 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~g  159 (467)
                      .++++++|+.|.|    ..++ ++.+.+++.+.+.......|.+..|.++||+++++++...+|..++++ +|++  |+|
T Consensus        27 ~~~~~~~l~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~--t~G   99 (383)
T TIGR03540        27 EGVDVISLGIGDP----DLPT-PKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLS--LIG   99 (383)
T ss_pred             cCCCeEEeCCCCC----CCCC-CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEE--CCC
Confidence            4568999999988    4444 778888888876543347898889999999999999987777777776 6888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +++++.++  +...+.+||+|++++|+|+.|...++..|++++.+|++++.++.+|++.+++.+.   .+++++++++||
T Consensus       100 ~~~~l~~~--~~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~---~~~~~v~i~~P~  174 (383)
T TIGR03540       100 SKEGIAHI--PLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIA---KKAKLMFINYPN  174 (383)
T ss_pred             cHHHHHHH--HHHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhcc---ccceEEEEeCCC
Confidence            99999998  3444679999999999999999999999999999999655567789999998886   467899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+....+++|+++||||.||++|+|+||++  
T Consensus       175 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~--~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i--  250 (383)
T TIGR03540       175 NPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGY--KAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAV--  250 (383)
T ss_pred             CCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCC--CCcCcccCCCcccCEEEEEecccccCCccceeeEEe--
Confidence            9999999999999999999999999999999999887531  122222221123578999999999999999999995  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                       +++++++.            +.........+++...|.++..+|.+.      .+++++.++.++++++.+.+.|+ +.
T Consensus       251 -~~~~l~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~L~-~~  310 (383)
T TIGR03540       251 -GNADLIAG------------LGKVKTNVDSGVFQAIQYAAIAALNGP------QDVVKEIRKIYQRRRDLLLEALK-KI  310 (383)
T ss_pred             -CCHHHHHH------------HHHHHHhcccCCChHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHHHHHH-hC
Confidence             78888887            544444444566777888888888764      23467788999999999999999 87


Q ss_pred             CCCCCcccccCCcceEEecCCC-----HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHH
Q 012238          400 KSGKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIID  461 (467)
Q Consensus       400 g~~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~  461 (467)
                      |    +.+..+++|+|+|+.+.     .++++++++++||.+.+|        +  ||+++. ++++++.++++|.+
T Consensus       311 ~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~  382 (383)
T TIGR03540       311 G----IDVEKPKATFYVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTV-PDERLEEAVARIKK  382 (383)
T ss_pred             C----CEecCCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecC-CHHHHHHHHHHHhh
Confidence            6    57778889999998652     455777777789999987        2  999986 77888888887764

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK08960 hypothetical protein; Provisional

Probab=100.00  E-value=3.6e-47  Score=382.27  Aligned_cols=356  Identities=17%  Similarity=0.200  Sum_probs=288.1

Q ss_pred             CCCCCcccchHHHhhc--CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhC
Q 012238           64 MAPPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFG  141 (467)
Q Consensus        64 ~~~~~~i~~~~~~~~~--~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~  141 (467)
                      ...+..+.++.+...+  ..++++|+|+.|.|    .+++ ++.+.+++.+.+... ...|.+..|.+++|+++|+++..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~----~~~~-~~~v~~a~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~   84 (387)
T PRK08960         11 DIEPFHVMALLARANELEAAGHDVIHLEIGEP----DFTT-AEPIVAAGQAALAAG-HTRYTAARGLPALREAIAGFYAQ   84 (387)
T ss_pred             hCCchHHHHHHHHHHHHHhcCCCeEEeCCCCC----CCCC-CHHHHHHHHHHHhcC-CCccCCCCCCHHHHHHHHHHHHH
Confidence            3344555555544331  23457899999998    5554 788999998887643 36798999999999999999987


Q ss_pred             CCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHH
Q 012238          142 ADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA  221 (467)
Q Consensus       142 ~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~  221 (467)
                      .+|..+++++|++  |+|+++++.++  +...+.|||+|++++|+|+.+...++..|++++.++++++.++.+|++.+++
T Consensus        85 ~~g~~~~~~~i~i--t~G~~~al~~~--~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  160 (387)
T PRK08960         85 RYGVDVDPERILV--TPGGSGALLLA--SSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVER  160 (387)
T ss_pred             HhCCCCChhhEEE--ccCcHHHHHHH--HHHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHH
Confidence            7788888999999  99999999998  3344679999999999999999999999999999998655567899999999


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEec
Q 012238          222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (467)
Q Consensus       222 ~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  301 (467)
                      .++   ++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++   ...++   ....+++++++|
T Consensus       161 ~~~---~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~---~~~~~---~~~~~~vi~~~S  231 (387)
T PRK08960        161 HWN---ADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGV---DAASV---LEVDDDAFVLNS  231 (387)
T ss_pred             HhC---ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCC---CCCCh---hhccCCEEEEee
Confidence            887   567788899999999999999999999999999999999999999998753   11122   233468999999


Q ss_pred             CccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 012238          302 YSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMA  381 (467)
Q Consensus       302 ~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~  381 (467)
                      |||.||++|+|+||++   +++++++.            +.........+++.+.|.++..+|.+. .    .+++++.+
T Consensus       232 ~SK~~g~~GlRiG~~~---~~~~~~~~------------~~~~~~~~~~~~s~~~q~a~~~~l~~~-~----~~~l~~~~  291 (387)
T PRK08960        232 FSKYFGMTGWRLGWLV---APPAAVPE------------LEKLAQNLYISASTPAQHAALACFEPE-T----LAILEARR  291 (387)
T ss_pred             cccccCCcccEEEEEE---cCHHHHHH------------HHHHHhhhccCCCHHHHHHHHHHhhcC-c----HHHHHHHH
Confidence            9999999999999996   77888777            665555555677888999888888642 1    34577889


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCccc-ccCCcceEEecCC-----C-HHHHHHHHHcccEEEeCC---------C--eEE
Q 012238          382 GRIKNVRQKLFDSLSAKDKSGKDWSF-ILRQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKD---------G--RIS  443 (467)
Q Consensus       382 ~~~~~~r~~l~~~l~~~~g~~~~~~~-~~~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~g---------g--Ris  443 (467)
                      +.++++|+.+.+.|+ +.|+    .. ..|.+|+|+|+++     + .++++++++++||.+.||         +  ||+
T Consensus       292 ~~~~~~~~~l~~~L~-~~~~----~~~~~p~g~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~  366 (387)
T PRK08960        292 AEFARRRDFLLPALR-ELGF----GIAVEPQGAFYLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFA  366 (387)
T ss_pred             HHHHHHHHHHHHHHH-hcCC----cCCcCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEE
Confidence            999999999999999 7763    33 4688999999864     2 345667787789999987         1  999


Q ss_pred             eccCChhhHHHHHHHHHHHHH
Q 012238          444 LAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       444 ~~~~~~~~i~~~~~~l~~~l~  464 (467)
                      ++. +.++++.++++|.++++
T Consensus       367 ~~~-~~~~l~~al~~l~~~~~  386 (387)
T PRK08960        367 YTQ-SLPRLQEAVERIARGLR  386 (387)
T ss_pred             ecC-CHHHHHHHHHHHHHHHh
Confidence            998 77889999988888764

>PLN02231 alanine transaminase

Probab=100.00  E-value=1.5e-46  Score=387.48  Aligned_cols=354  Identities=16%  Similarity=0.158  Sum_probs=276.8

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc--C-CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER--G-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~--~-~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      .++.|+|+.|.+    .+|  .+.+.++. +.+..  + ....|.+..|.++||+++|+++...+|..+++++|++  |+
T Consensus       128 ~p~~i~~~~~~~----~fp--~~~i~~a~-~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~i--T~  198 (534)
T PLN02231        128 HPSLLDKSETHG----LFS--ADAIERAW-QILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFL--TD  198 (534)
T ss_pred             CCccCCCCCccc----cCC--HHHHHHHH-HHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEE--eC
Confidence            368899986554    444  34444444 45432  2 3467999999999999999999888898999999999  99


Q ss_pred             CchhHHHHHHHHHHHhC-CCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC---CCcEEEE
Q 012238          159 SGTGSLRLAAALIERYF-PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP---GGSFILL  234 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~-~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~i~  234 (467)
                      |+++++.++  +...+. +||.|+++.|+|+.|...++..|++++.++++++++|++|++.|++.+++..   .++++++
T Consensus       199 Ga~~ai~~~--~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~iv  276 (534)
T PLN02231        199 GASPAVHMM--MQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALV  276 (534)
T ss_pred             CHHHHHHHH--HHHhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEE
Confidence            999999997  333353 7999999999999999999999999999999766678999999999987421   2578888


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh------cCCeEEEEecCccCc-c
Q 012238          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT------RGMELLVAQSYSKNL-G  307 (467)
Q Consensus       235 i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~S~SK~~-~  307 (467)
                      ++|||||||.+++.+++++|+++|++||++||+||+|+++.|++. ....++..+..      ...++++++||||.+ +
T Consensus       277 l~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~-~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g  355 (534)
T PLN02231        277 VINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPD-KKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYG  355 (534)
T ss_pred             EeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCcccHHHHHhhhccccCCceEEEEeccCccccc
Confidence            899999999999999999999999999999999999999998521 12223333321      123699999999975 8


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCCh----hhHHHHHHHHHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNP----ALFDEWKAEMEMMAGR  383 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~~~~l~~~~~~  383 (467)
                      +||+|+||+++...++++++.            +.+... ...+++...|.++..+++.+    ..++.|.++.+.+++.
T Consensus       356 ~pGlRiGy~~~~~~~~~l~~~------------l~k~~~-~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~  422 (534)
T PLN02231        356 ECGKRGGYMEVTGFTSDVREQ------------IYKVAS-VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSS  422 (534)
T ss_pred             CCccceEEEEEecCCHHHHHH------------HHHHHh-hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHH
Confidence            999999999632237778777            444433 23456677888888888653    2334445556778899


Q ss_pred             HHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC--C--------------H-HHHHHHHHcccEEEeCC-------
Q 012238          384 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--N--------------K-AQSDNMTNKWHVYMTKD-------  439 (467)
Q Consensus       384 ~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~--------------~-~~~~~ll~~~gI~v~~g-------  439 (467)
                      |+++++.+.+.|+ ++.   ++.+.+|+||||+|.++  .              . .++.++++++||.++||       
T Consensus       423 ~~~r~~~l~~~L~-~~~---gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~  498 (534)
T PLN02231        423 LARRAKTLEDALN-SLE---GVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVP  498 (534)
T ss_pred             HHHHHHHHHHHHh-cCC---CceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCC
Confidence            9999999999998 762   26888999999999543  2              1 13567888889999998       


Q ss_pred             C----eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          440 G----RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       440 g----Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                      |    |++|.. ++++++.++++|.+.+++
T Consensus       499 g~~~~Rit~~~-~~e~l~eal~RL~~~~~~  527 (534)
T PLN02231        499 GTWHFRCTILP-QEDKIPAIVSRLTEFHKS  527 (534)
T ss_pred             CCCeEEEEeCC-CHHHHHHHHHHHHHHHHH
Confidence            1    999976 889999999999988765

>PRK06290 aspartate aminotransferase; Provisional

Probab=100.00  E-value=6.2e-47  Score=381.55  Aligned_cols=342  Identities=15%  Similarity=0.123  Sum_probs=278.5

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcc-cccC-ceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSV-LKEQ-RVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~-~~~~-~i~~~~t~g  159 (467)
                      +.++|+|++|+|    ...+ ++.+.+++.+.+.......|+ ..|.++||+++|+++...+|.. ++++ +|++  |+|
T Consensus        43 ~~~~i~L~~g~p----~~~~-~~~~~~~l~~~~~~~~~~~Y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~i--t~G  114 (410)
T PRK06290         43 DMELIDMGVGEP----DEMA-DESVVEVLCEEAKKPENRGYA-DNGIQEFKEAAARYMEKVFGVKDIDPVTEVIH--SIG  114 (410)
T ss_pred             CCCeEEcCCCCC----CCCC-CHHHHHHHHHHHhCCCCCCCC-CCCcHHHHHHHHHHHHHHcCCCcCCCcceEEE--ccC
Confidence            346899999998    4443 677888887765433335685 5899999999999998777877 8886 7999  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +++++.++  +...+.+||.|+++.|+|+.|...++..|++++.++++++.++.+|++.+++.+.   .+++++++++||
T Consensus       115 s~~al~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~nP~  189 (410)
T PRK06290        115 SKPALAML--PSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIK---EKAKLLYLNYPN  189 (410)
T ss_pred             HHHHHHHH--HHHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhc---ccceEEEEECCC
Confidence            99999997  3444679999999999999999999999999999999755567889999998886   467899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||.+++.+++++|+++|++||++||+||+|.++.+++.   ..+...+....+++|+++||||.||+||+|+||++  
T Consensus       190 NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~---~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii--  264 (410)
T PRK06290        190 NPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK---PLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVV--  264 (410)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC---CcChhcCCCccccEEEEeechhhcCCchhheEeEE--
Confidence            9999999999999999999999999999999999987531   11222222233578999999999999999999996  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                       +++++++.            +.........+++.+.|.++..+|.++.       .+++.+++++++++.+.+.|+ +.
T Consensus       265 -~~~~l~~~------------l~~~~~~~~~~~~~~~q~aa~~~l~~~~-------~~~~~~~~~~~~~~~l~~~L~-~~  323 (410)
T PRK06290        265 -GNELIVKA------------FATVKDNNDSGQFIAIQKAGIYALDHPE-------ITEKIREKYSRRLDKLVKILN-EV  323 (410)
T ss_pred             -eCHHHHHH------------HHHHHhccccCCcHHHHHHHHHHhhCcH-------HHHHHHHHHHHHHHHHHHHHH-hC
Confidence             78888887            6655555555677788999988887753       256788899999999999999 87


Q ss_pred             CCCCCcccccCCcceEEecCCC------------HHHHHHHHHcccEEEeCCC------eEEeccC--ChhhHHHHHHHH
Q 012238          400 KSGKDWSFILRQIGMFSFTGLN------------KAQSDNMTNKWHVYMTKDG------RISLAGL--SLAKCEYLADAI  459 (467)
Q Consensus       400 g~~~~~~~~~~~~g~f~~~~l~------------~~~~~~ll~~~gI~v~~gg------Ris~~~~--~~~~i~~~~~~l  459 (467)
                      |    +.+.+|+||||+|+.+.            .+++++|+++.+|.+.||.      ||+++..  ++++.++++++|
T Consensus       324 g----~~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l  399 (410)
T PRK06290        324 G----FKAEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEI  399 (410)
T ss_pred             C----CeecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHH
Confidence            6    57778999999997542            2557788887778888862      9999842  668999999999


Q ss_pred             HHHHHhc
Q 012238          460 IDSYHNV  466 (467)
Q Consensus       460 ~~~l~~~  466 (467)
                      .+.+.++
T Consensus       400 ~~~~~~~  406 (410)
T PRK06290        400 KRRLSDV  406 (410)
T ss_pred             HHHHhhc
Confidence            9998765

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=100.00  E-value=1.1e-46  Score=380.41  Aligned_cols=365  Identities=13%  Similarity=0.165  Sum_probs=285.5

Q ss_pred             cccchHHHhhcCC--CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcc
Q 012238           69 PILGVSEAFKADT--DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSV  146 (467)
Q Consensus        69 ~i~~~~~~~~~~~--~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~  146 (467)
                      ++.++.+.++.+.  ++++|+|++|.|.++...++ ++.+.+++.+.+.......|.|..|.++||+++++++... +..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~-~~~   92 (401)
T TIGR01264        15 PIRAIVDNMKVKPNPEKPMIKLSIGDPTVFGNLPT-DPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNP-DGP   92 (401)
T ss_pred             HHHHHHHHHHhhhhcCCCeeecCCCCCCCcCCCCC-CHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhc-CCC
Confidence            3555555555443  34779999999832223444 7888999888776544467999999999999999998764 556


Q ss_pred             cccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC
Q 012238          147 LKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA  226 (467)
Q Consensus       147 ~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~  226 (467)
                      +++++|++  |+|+++++.++  +...+.+||+|++++|+|..|...++..|++++.++++.++++++|++.+++.++  
T Consensus        93 ~~~~~i~~--t~G~~~al~~~--~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~--  166 (401)
T TIGR01264        93 IEADDVVL--CSGCSHAIEMC--IAALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLID--  166 (401)
T ss_pred             CCHHHEEE--CcChHHHHHHH--HHHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhc--
Confidence            78899999  99999999998  3445679999999999999999999999999999988655578999999998886  


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc
Q 012238          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (467)
Q Consensus       227 ~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (467)
                       .+++++++++||||||.+++.+++++|+++|+++|++||+||+|.+|.+++.  ...++..+. ...++|+++||||+|
T Consensus       167 -~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~-~~~~vi~~~SfSK~~  242 (401)
T TIGR01264       167 -EKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGA--TFEPLASLS-STVPILSCGGLAKRW  242 (401)
T ss_pred             -cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCc--ccccHHHcC-CCCcEEEEccCcccC
Confidence             4567888999999999999999999999999999999999999999987531  222332332 223599999999999


Q ss_pred             ccCCCccceEEEecCCH-HHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238          307 GLYAERIGAMNVVCSSS-DLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  385 (467)
Q Consensus       307 ~~~G~RiG~~~~v~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~  385 (467)
                      ++||+|+||++  +.++ +....        +...++.... ...+++.+.|.++..+|.+. .    ++++++.+++++
T Consensus       243 ~~~GlRiG~iv--~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~-~----~~~l~~~~~~~~  306 (401)
T TIGR01264       243 LVPGWRLGWII--IHDRRGILRD--------IRDGLVKLSQ-RILGPCTIVQGALPSILLRT-P----QEYFDGTLSVLE  306 (401)
T ss_pred             CCccceEEEEE--ecCcchhHHH--------HHHHHHHHhh-ccCCCCcHHHHHHHHHHHhC-c----HHHHHHHHHHHH
Confidence            99999999996  3332 22222        2222444433 23456778899998888652 1    244778899999


Q ss_pred             HHHHHHHHHhhhccCCCCCcccccCCcceEEecCC----------CHHHHHHHHHcccEEEeCCC--------eEEeccC
Q 012238          386 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----------NKAQSDNMTNKWHVYMTKDG--------RISLAGL  447 (467)
Q Consensus       386 ~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l----------~~~~~~~ll~~~gI~v~~gg--------Ris~~~~  447 (467)
                      ++|+.+.+.|+ .++  + +.+..|++|+|+|+++          +.++++++++++||.+.||+        ||+++. 
T Consensus       307 ~~r~~l~~~L~-~~~--~-~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~-  381 (401)
T TIGR01264       307 SNAMLCYGALA-AVP--G-LRPVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTV-  381 (401)
T ss_pred             HHHHHHHHHHH-hCC--C-CcccCCCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcC-
Confidence            99999999999 762  2 6777899999999974          23457778777899999872        999998 


Q ss_pred             ChhhHHHHHHHHHHHHHhc
Q 012238          448 SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       448 ~~~~i~~~~~~l~~~l~~~  466 (467)
                      ++++++.++++|.+.++++
T Consensus       382 ~~~~l~~~l~rl~~~~~~~  400 (401)
T TIGR01264       382 PVVMMEEACSRIQEFCERH  400 (401)
T ss_pred             CHHHHHHHHHHHHHHHhcc
Confidence            7899999999999998875

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK06107 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-46  Score=379.59  Aligned_cols=345  Identities=19%  Similarity=0.202  Sum_probs=286.0

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      .++++++|+.|.|    ..++ ++.+.+++.+.+.... ..|.+..|.++||+++++++....|..+++++|++  |+|+
T Consensus        31 ~~~~~i~l~~g~p----~~~~-~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~--t~G~  102 (402)
T PRK06107         31 AGRSIVDLTVGEP----DFDT-PDHIKQAAVAAIERGE-TKYTLVNGTPALRKAIIAKLERRNGLHYADNEITV--GGGA  102 (402)
T ss_pred             ccCCEEEcCCCCC----CCCC-CHHHHHHHHHHHHcCC-CCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEE--eCCH
Confidence            3468999999998    4444 6778899888876543 67999999999999999999877788888999999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      ++|+.++  +...+.+||+|++++|+|..|...+...|..++.+++++++++.+|++.+++.+.   ++++++++++|||
T Consensus       103 ~~al~~~--~~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~N  177 (402)
T PRK06107        103 KQAIFLA--LMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAIT---PRTRWLILNAPSN  177 (402)
T ss_pred             HHHHHHH--HHHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcC---cCceEEEEECCCC
Confidence            9999998  4445779999999999999999999999999888888545567899999999886   5677888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhc-CCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEecCccCcccCCCccceEEE
Q 012238          241 PTGIDPTPEQWEKIADVIQEK-NHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERIGAMNV  318 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~-~~~li~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (467)
                      |||.+++.+++++|+++|+++ ++++|+||+|.++.+++.  ...++..+.. ..+++++++||||.|++||+|+||++ 
T Consensus       178 PtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~--~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~-  254 (402)
T PRK06107        178 PTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDE--PTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAA-  254 (402)
T ss_pred             CCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCC--CCCCHHHhCcCccCCEEEEeccchhhcCcccceeeee-
Confidence            999999999999999999998 999999999999887532  1222322211 24689999999999999999999996 


Q ss_pred             ecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012238          319 VCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK  398 (467)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~  398 (467)
                        +++++++.            +.........+++.+.|.++..+|.++      ..++++.++.++++++.+.+.|+ +
T Consensus       255 --~~~~~~~~------------~~~~~~~~~~~~s~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~L~-~  313 (402)
T PRK06107        255 --GPADLIAA------------INKLQSQSSSCPSSISQAAAAAALNGD------QSFVTESVAVYKQRRDYALALLN-A  313 (402)
T ss_pred             --cCHHHHHH------------HHHHHHhcccCCChHHHHHHHHHhcCC------hHHHHHHHHHHHHHHHHHHHHHh-c
Confidence              78888887            666555555678889999999998753      23477888999999999999998 7


Q ss_pred             cCCCCCcccccCCcceEEecCC---------------C-HHHHHHHHHcccEEEeCC---C-----eEEeccCChhhHHH
Q 012238          399 DKSGKDWSFILRQIGMFSFTGL---------------N-KAQSDNMTNKWHVYMTKD---G-----RISLAGLSLAKCEY  454 (467)
Q Consensus       399 ~g~~~~~~~~~~~~g~f~~~~l---------------~-~~~~~~ll~~~gI~v~~g---g-----Ris~~~~~~~~i~~  454 (467)
                      ++   ++.+.+|++|||+|+.+               + .+++.++++++||.+.||   |     ||+|+. +++++++
T Consensus       314 ~~---g~~~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~-~~e~l~~  389 (402)
T PRK06107        314 IP---GLSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIAT-SLETLEE  389 (402)
T ss_pred             CC---CCcccCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCC-CHHHHHH
Confidence            62   16778899999999854               2 355778888889999998   2     999997 8999999


Q ss_pred             HHHHHHHHHHhc
Q 012238          455 LADAIIDSYHNV  466 (467)
Q Consensus       455 ~~~~l~~~l~~~  466 (467)
                      ++++|.+.++++
T Consensus       390 ~l~~l~~~l~~~  401 (402)
T PRK06107        390 ACARIERAVAAL  401 (402)
T ss_pred             HHHHHHHHHHhc
Confidence            999999999875

>PRK05942 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.3e-46  Score=378.85  Aligned_cols=341  Identities=18%  Similarity=0.181  Sum_probs=271.5

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCC
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLS  159 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~g  159 (467)
                      .++++|+|+.|.|    ..++ ++.+.+++.+.+.......|++..|.++||+++++++...++..++++ +|++  |+|
T Consensus        33 ~g~~~i~l~~g~p----~~~~-p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~v--t~G  105 (394)
T PRK05942         33 QGLDLIDLGMGNP----DGAA-PQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALP--LLG  105 (394)
T ss_pred             cCCCeEEcCCCCC----CCCC-CHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEE--ccC
Confidence            3457999999987    3333 555666655555433347899899999999999999987767777787 4888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +++++.++  +...+.+||+|++++|+|+.+...++..|++++.++++.++++.+|++.+++.+.   ++++++++++||
T Consensus       106 ~~~al~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~~P~  180 (394)
T PRK05942        106 SKEGLTHL--ALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVA---QQAKILYFNYPS  180 (394)
T ss_pred             hHHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhcc---ccceEEEEcCCC
Confidence            99999997  4445779999999999999999999999999999998655567899999999886   578899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||.+++.+++++|+++|+++|++||+||+|.++.+++.  ...++..+....+.+|+++||||.||++|+|+||++  
T Consensus       181 NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~--  256 (394)
T PRK05942        181 NPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGY--QPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVV--  256 (394)
T ss_pred             CCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCC--CCCChhhCCCccccEEEEecchhccCChhhheeeee--
Confidence            9999999999999999999999999999999999987532  112222222223467999999999999999999996  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                       .++++++.            ++........+++...|.++..+|+..      .+++++.+++++++++.+.+.|+ ..
T Consensus       257 -~~~~l~~~------------l~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~L~-~~  316 (394)
T PRK05942        257 -GNRHIIQG------------LRTLKTNLDYGIFSALQKAAETALQLP------DSYLQQVQERYRTRRDFLIQGLG-EL  316 (394)
T ss_pred             -cCHHHHHH------------HHHHHhhcccCCCHHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHHH-HC
Confidence             78888887            555544434467778888888888642      34577888999999999999998 77


Q ss_pred             CCCCCcccccCCcceEEecCC----C-HHHHHHHHHcccEEEeCC------C----eEEeccCChhhHHHHHHHHHHH
Q 012238          400 KSGKDWSFILRQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKD------G----RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       400 g~~~~~~~~~~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~g------g----Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                      |    +.+..+++|+|+|+.+    + .+++.++++++||.+.||      +    ||+++. +.+.+..++++|.++
T Consensus       317 ~----~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~  389 (394)
T PRK05942        317 G----WNIPPTKATMYLWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIA-DCDRLGEALDRLKQA  389 (394)
T ss_pred             C----CeecCCCeeeEEEEECCCCCCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHHh
Confidence            6    5677889999999865    2 355667887889999886      1    999986 567777777777654

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=1.6e-46  Score=384.02  Aligned_cols=347  Identities=15%  Similarity=0.184  Sum_probs=274.7

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-----------CCCCcCCCCcchHHHHHHHHHHHhCCCC--cccccC
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-----------GENKEYLPIEGLAAFNKVTAELLFGADN--SVLKEQ  150 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~l~~~~~--~~~~~~  150 (467)
                      +.|+|+++++    ..+  .+.+.+.+....+.           .....|.+..|.++||+++|+++....+  ..++++
T Consensus        39 g~i~L~~~En----~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~  112 (468)
T PLN02450         39 GIIQMGLAEN----QLS--FDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPN  112 (468)
T ss_pred             eeEEeehhHh----Hhh--HHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChH
Confidence            7999999987    332  45566655543210           1124588888999999999999976555  346899


Q ss_pred             ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCCCeEEeeeecCCCCCCChhhHHHHHHcC---
Q 012238          151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIADIKAA---  226 (467)
Q Consensus       151 ~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---  226 (467)
                      +|++  |+|+++++.++  +...+.|||.|++++|+|+.|...+. ..|++++.+++++++++.+|++.+++.+++.   
T Consensus       113 ~Iii--t~Ga~~al~~l--~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~  188 (468)
T PLN02450        113 KLVL--TAGATSANETL--MFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKL  188 (468)
T ss_pred             HeEE--ccChHHHHHHH--HHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhc
Confidence            9999  99999999997  44457799999999999999988888 5899999999865667888999999988642   


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh--------cCCeEEE
Q 012238          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT--------RGMELLV  298 (467)
Q Consensus       227 ~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~--------~~~~~i~  298 (467)
                      ..++++++++|||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++.....        ..+++++
T Consensus       189 ~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~--~~~s~l~~~~~~~~~~~~~~~~vi~  266 (468)
T PLN02450        189 NLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSP--GFVSVMEVLKDRKLENTDVSNRVHI  266 (468)
T ss_pred             CCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCC--CcccHHHHhhhcccccCCCCCcEEE
Confidence            23678889999999999999999999999999999999999999999887542  1212222221        2468999


Q ss_pred             EecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                      ++||||.|+++|+|+||++  +.++.+++.            +.+...  +..++.+.|.++..+|+++.+.+.   +++
T Consensus       267 l~S~SK~~~l~GlRiG~li--~~~~~l~~~------------~~~~~~--~~~~s~~~Q~a~~~~L~~~~~~~~---~l~  327 (468)
T PLN02450        267 VYSLSKDLGLPGFRVGAIY--SNDEMVVSA------------ATKMSS--FGLVSSQTQYLLSALLSDKKFTKN---YLE  327 (468)
T ss_pred             EEeccccCCCCCccEEEEE--ECCHHHHHH------------HHHHhh--cCCCCHHHHHHHHHHhCCchhHHH---HHH
Confidence            9999999999999999996  444545554            444322  334678899999999998765332   467


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC-----------HHHHHHHHHcccEEEeCC--------
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----------KAQSDNMTNKWHVYMTKD--------  439 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~-----------~~~~~~ll~~~gI~v~~g--------  439 (467)
                      +.+++++++|+.+.+.|+ ++|    +.+.++++|+|+|+.+.           .++++++++++||.+.||        
T Consensus       328 ~~~~~l~~rr~~l~~~L~-~~g----i~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~  402 (468)
T PLN02450        328 ENQKRLKQRQKKLVSGLE-AAG----IKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEP  402 (468)
T ss_pred             HHHHHHHHHHHHHHHHHH-HcC----CcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCC
Confidence            889999999999999999 876    57788999999998763           234667788789999998        


Q ss_pred             C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          440 G--RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 g--Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      |  ||+|+..+++++++++++|++++++.
T Consensus       403 g~~Rl~f~~~~~~~l~~~l~ri~~~l~~~  431 (468)
T PLN02450        403 GWFRVCFANMSEETLDLAMKRLKSFVESD  431 (468)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHHHHhc
Confidence            2  99999767899999999999998753

>PRK12414 putative aminotransferase; Provisional

Probab=100.00  E-value=1.2e-46  Score=377.70  Aligned_cols=335  Identities=15%  Similarity=0.188  Sum_probs=274.5

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc-CceeeeecCCch
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSGT  161 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~ggt  161 (467)
                      +++|+|+.|.|    ..++ ++.+.+++.+.+... ...|.|..|.++||+++++++...+|..+++ ++|++  |+|++
T Consensus        29 ~~~i~l~~g~p----~~~~-~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~i--t~g~~  100 (384)
T PRK12414         29 HDALNLSQGAP----NFAP-DPALVEGVARAMRDG-HNQYAPMAGIAALREALAEKTERLYGARYDPASEVTV--IASAS  100 (384)
T ss_pred             CCeEEcCCCCC----CCCC-CHHHHHHHHHHHHhC-CCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--ECChH
Confidence            47899999998    4544 788888888876544 3789999999999999999987766766665 58999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      +++.++  +...+.+||+|+++.|+|..|...++..|++++.++++ ++++.+|++.+++.++   ++++++++++||||
T Consensus       101 ~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~---~~~~~v~i~~p~NP  174 (384)
T PRK12414        101 EGLYAA--ISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLS-PEDFRVNWDEVAAAIT---PRTRMIIVNTPHNP  174 (384)
T ss_pred             HHHHHH--HHHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEecC-ccccccCHHHHHhhcC---cccEEEEEcCCCCC
Confidence            999987  44457899999999999999999999999999999985 3457899999999886   46788899999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+....+++|+++||||.||+||+|+||++   +
T Consensus       175 TG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~--~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v---~  249 (384)
T PRK12414        175 SATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGA--RHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCL---A  249 (384)
T ss_pred             CCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCC--CccCcccCcCccCcEEEEecccccccCccceEEEEe---c
Confidence            99999999999999999999999999999999887632  111222222224589999999999999999999996   7


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +.+.......+++.+.|.++..+|.++..       ..+.++.|+++|+.+.+.|+ +.| 
T Consensus       250 ~~~l~~~------------l~~~~~~~~~~~s~~~q~a~~~~l~~~~~-------~~~~~~~~~~~r~~l~~~L~-~~g-  308 (384)
T PRK12414        250 PAELMDE------------IRKVHQFMVFSADTPMQHAFAEALAEPAS-------YLGLGAFYQRKRDLLARELA-GSR-  308 (384)
T ss_pred             CHHHHHH------------HHHHHhheecCCCcHHHHHHHHHhcCChH-------HHHHHHHHHHHHHHHHHHHH-hCC-
Confidence            7888877            65555444556778899999999987532       22467788999999999999 776 


Q ss_pred             CCCcccccCCcceEEecCC-------CHHHHHHHHHcccEEEeCC----------C--eEEeccCChhhHHHHHHHHHH
Q 012238          402 GKDWSFILRQIGMFSFTGL-------NKAQSDNMTNKWHVYMTKD----------G--RISLAGLSLAKCEYLADAIID  461 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l-------~~~~~~~ll~~~gI~v~~g----------g--Ris~~~~~~~~i~~~~~~l~~  461 (467)
                         +.+.++.||||+|+.+       +.+++.++++++||.+.||          +  ||+|+. +++++++++++|.+
T Consensus       309 ---~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~~~rl~~  383 (384)
T PRK12414        309 ---FELLPSEGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK-DDATLVEGARRLCS  383 (384)
T ss_pred             ---CeecCCCcceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC-CHHHHHHHHHHHhh
Confidence               5778899999999743       3456777887889999996          1  999998 78999999988864

>PRK07337 aminotransferase; Validated

Probab=100.00  E-value=2.4e-46  Score=376.52  Aligned_cols=338  Identities=17%  Similarity=0.221  Sum_probs=277.6

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      .++++++|+.|.|    ..++ ++.+.+++.+.+... ...|.+..|.++||+++|+++...+|..+++++|++  |+|+
T Consensus        28 ~~~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~--t~G~   99 (388)
T PRK07337         28 AGRDIIHMGIGEP----DFTA-PEPVVEAAARALRRG-VTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVV--TAGA   99 (388)
T ss_pred             cCCCEEEeCCcCC----CCCC-CHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEE--ecCc
Confidence            4568999999988    4443 677888888877544 367988899999999999999877787788999999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      +++++++  +...+.+||+|++++|+|+.+...++..|++++.++++++.++++|++.+++.+.   ++++++++++|||
T Consensus       100 ~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~N  174 (388)
T PRK07337        100 SAALLLA--CLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWG---ERTRGVLLASPSN  174 (388)
T ss_pred             HHHHHHH--HHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcC---ccceEEEEECCCC
Confidence            9999997  3445679999999999999999999999999999998655578899999999886   5778888999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      |||.+++.+++++|+++|+++++++|+||+|.++.+++.   ..+   .....+++++++||||.||++|+|+||++   
T Consensus       175 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~---~~~---~~~~~~~vi~~~S~SK~~~~~G~RiG~~~---  245 (388)
T PRK07337        175 PTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA---PVS---ALSLGDDVITINSFSKYFNMTGWRLGWLV---  245 (388)
T ss_pred             CCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC---CcC---hhhccCCEEEEEechhhcCCchhheeeee---
Confidence            999999999999999999999999999999999887531   111   12335689999999999999999999996   


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      .++++++.            +.........+++.+.|.++..++.+..+     +.+++.++.++++|+.+.+.|+ +.+
T Consensus       246 ~~~~l~~~------------l~~~~~~~~~~~s~~~q~~~~~~l~~~~~-----~~~~~~~~~~~~~r~~~~~~L~-~~~  307 (388)
T PRK07337        246 VPEALVGT------------FEKLAQNLFICASALAQHAALACFEPDTL-----AIYERRRAEFKRRRDFIVPALE-SLG  307 (388)
T ss_pred             cCHHHHHH------------HHHHHHHhccCCChHHHHHHHHHhccCch-----HHHHHHHHHHHHHHHHHHHHHH-hcC
Confidence            77777777            65555544556788889998888865432     2246678899999999999999 776


Q ss_pred             CCCCccc-ccCCcceEEecCCC----------HHHHHHHHHcccEEEeCC---------C--eEEeccCChhhHHHHHHH
Q 012238          401 SGKDWSF-ILRQIGMFSFTGLN----------KAQSDNMTNKWHVYMTKD---------G--RISLAGLSLAKCEYLADA  458 (467)
Q Consensus       401 ~~~~~~~-~~~~~g~f~~~~l~----------~~~~~~ll~~~gI~v~~g---------g--Ris~~~~~~~~i~~~~~~  458 (467)
                      .    .+ ..|++|+|+|+++.          .+++.++++++||.+.||         |  ||+|+. ++++++.++++
T Consensus       308 ~----~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~-~~~~l~~~l~r  382 (388)
T PRK07337        308 F----KVPVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT-SMSRLEEAVAR  382 (388)
T ss_pred             C----ccccCCCeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC-CHHHHHHHHHH
Confidence            3    33 46789999998652          245677788889999886         1  999998 78999999999


Q ss_pred             HHHHH
Q 012238          459 IIDSY  463 (467)
Q Consensus       459 l~~~l  463 (467)
                      |.+++
T Consensus       383 l~~~l  387 (388)
T PRK07337        383 LGKLF  387 (388)
T ss_pred             HHHHh
Confidence            98764

>PRK05957 aspartate aminotransferase; Provisional

Probab=100.00  E-value=4.7e-46  Score=374.11  Aligned_cols=344  Identities=18%  Similarity=0.213  Sum_probs=279.8

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccc-cCceeeeecCCch
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK-EQRVATVQGLSGT  161 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~-~~~i~~~~t~ggt  161 (467)
                      +++++|+.|.+    ..++ ++.+.+++.+.+.......|.+..|.+++|+++++++....|..++ +++|++  |+|++
T Consensus        27 ~~~~~l~~g~~----~~~~-~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~--t~G~~   99 (389)
T PRK05957         27 PGTISLGQGVV----SYPP-PPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVV--TAGSN   99 (389)
T ss_pred             CCeEEccCCCC----CCCC-CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEE--eCChH
Confidence            47899999998    4444 7888999988765443467999999999999999999777777666 678998  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      +++.++  +...+.+||+|++++|+|..+...++..|++++.++.  +.++++|++.+++.++   ++++++++++||||
T Consensus       100 ~~l~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~---~~~klv~~~~p~NP  172 (389)
T PRK05957        100 MAFMNA--ILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPT--DDNYQLQPEAIEQAIT---PKTRAIVTISPNNP  172 (389)
T ss_pred             HHHHHH--HHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeec--CCCCCcCHHHHHHhcC---cCceEEEEeCCCCC
Confidence            999887  3444679999999999999999999999999999988  3467899999999886   56788889999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|+++|+++|+++|+||+|.++.++...  ..+...+.+...++|+++||||.||++|+|+||++   .
T Consensus       173 tG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~--~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~---~  247 (389)
T PRK05957        173 TGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVK--HFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMV---I  247 (389)
T ss_pred             CCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCC--ccChhhCCCccCcEEEEecchhhccCccceeEEEe---c
Confidence            999999999999999999999999999999999876321  11222223444689999999999999999999996   6


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      +++++++            +.........+++.+.|.++..+|.++.      .++++.+++++++|+.+.+.|+ +++ 
T Consensus       248 ~~~~~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~~~r~~l~~~L~-~~~-  307 (389)
T PRK05957        248 PIHLLEA------------IKKIQDTILICPPVVSQYAALGALQVGK------SYCQQHLPEIAQVRQILLKSLG-QLQ-  307 (389)
T ss_pred             CHHHHHH------------HHHHHhhcccCCCcHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHHH-hcC-
Confidence            7788887            6555555555778889999888887642      2245566778999999999998 763 


Q ss_pred             CCCcccccCCcceEEecCC----C-HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          402 GKDWSFILRQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                       +.+.+.++++|+|+|+.+    + .++++++++++||.+.||        +  ||||+..+++++++++++|.+.++++
T Consensus       308 -~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~~~~  386 (389)
T PRK05957        308 -DRCTLHPANGAFYCFLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGLKTI  386 (389)
T ss_pred             -CCccccCCCeeEEEEEeCCCCCChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence             213667889999999864    2 366788887789999997        1  99998778899999999999988764

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=100.00  E-value=7.6e-46  Score=373.36  Aligned_cols=339  Identities=16%  Similarity=0.127  Sum_probs=271.9

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcc--cccC-ceeeeec
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSV--LKEQ-RVATVQG  157 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~--~~~~-~i~~~~t  157 (467)
                      .+.+.|+|+.|+|    ..++ ++.+.+++.+.+..  ...|.+..|.++||+++|+++...++..  ++++ +|++  |
T Consensus        26 ~~~~~i~l~~~~p----~~~~-~~~~~~a~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~i--t   96 (393)
T TIGR03538        26 ASKPPIALSIGEP----KHPT-PAFVLEALRENLHG--LSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLP--V   96 (393)
T ss_pred             cCCCeEEecCCCC----CCCC-CHHHHHHHHHHhhc--cCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEE--C
Confidence            4568999999998    4444 78899998887642  4789999999999999999998776665  6775 7988  9


Q ss_pred             CCchhHHHHHHHHHHHhCCCCE--EEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238          158 LSGTGSLRLAAALIERYFPGAK--VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (467)
Q Consensus       158 ~ggt~al~l~~~~l~~~~~gd~--Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i  235 (467)
                      +|+++++.++  +...+.|||+  |++++|+|..|...++..|++++.+++++++++.+|++++++.+.   .+++++++
T Consensus        97 ~Ga~~al~~~--~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l  171 (393)
T TIGR03538        97 NGTREALFAF--AQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVW---RRCQLLFV  171 (393)
T ss_pred             CCcHHHHHHH--HHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHh---hcceEEEE
Confidence            9999999997  3445679986  999999999999999999999999999655567899999998886   46778888


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh----cCCeEEEEecCccCcccCCC
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT----RGMELLVAQSYSKNLGLYAE  311 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~SK~~~~~G~  311 (467)
                      ++||||||.+++.+++++|+++|++||++||+||+|.++.+++..........+..    ..+++|+++||||.|+++|+
T Consensus       172 ~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~Gl  251 (393)
T TIGR03538       172 CSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGL  251 (393)
T ss_pred             eCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCccc
Confidence            99999999999999999999999999999999999999987521011111111111    24689999999999999999


Q ss_pred             ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012238          312 RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL  391 (467)
Q Consensus       312 RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l  391 (467)
                      |+||++   +++++++.            +.+.......+++.+.|.++...+.+.       +++++.++.++++++.+
T Consensus       252 RvG~~i---~~~~l~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~~~~~  309 (393)
T TIGR03538       252 RSGFVA---GDAEILKA------------FLRYRTYHGCAMPIPTQLASIAAWNDE-------QHVRENRALYREKFAAV  309 (393)
T ss_pred             ceEEEe---cCHHHHHH------------HHHHHHhhccCcCHHHHHHHHHHhcCh-------HHHHHHHHHHHHHHHHH
Confidence            999996   78888877            555444334466778888877777543       34778889999999999


Q ss_pred             HHHhhhccCCCCCcccccCCcceEEecCCC---HHHHHHHHHcccEEEeCC--------------C--eEEeccCChhhH
Q 012238          392 FDSLSAKDKSGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKD--------------G--RISLAGLSLAKC  452 (467)
Q Consensus       392 ~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~g--------------g--Ris~~~~~~~~i  452 (467)
                      .+.|+ ..     +.+..|++|+|+|+.+.   .++++++++++||.+.||              +  ||||+. +++++
T Consensus       310 ~~~L~-~~-----~~~~~p~gg~f~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~-~~~~l  382 (393)
T TIGR03538       310 LEILG-QV-----LDLELPDAGFYLWPKVPGDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA-PLEEC  382 (393)
T ss_pred             HHHHH-hh-----CcccCCCeeEEEEEECCCCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC-CHHHH
Confidence            99998 64     23567899999999863   455677777789999665              1  999988 78999


Q ss_pred             HHHHHHHHHH
Q 012238          453 EYLADAIIDS  462 (467)
Q Consensus       453 ~~~~~~l~~~  462 (467)
                      +.++++|.+.
T Consensus       383 ~~~l~~l~~~  392 (393)
T TIGR03538       383 VEAAERIRSF  392 (393)
T ss_pred             HHHHHHHHHh
Confidence            9999999874

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK06108 aspartate aminotransferase; Provisional

Probab=100.00  E-value=7.5e-46  Score=372.48  Aligned_cols=342  Identities=19%  Similarity=0.188  Sum_probs=281.5

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      +++|+|+.|+|    ..++ ++.+.+++.+.+.... ..|.+..|.+++|+++++++...+|..+++++|++  |+|+++
T Consensus        24 ~~~i~l~~g~~----~~~~-~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~--t~g~~~   95 (382)
T PRK06108         24 EGVLPLWFGES----DLPT-PDFIRDAAAAALADGE-TFYTHNLGIPELREALARYVSRLHGVATPPERIAV--TSSGVQ   95 (382)
T ss_pred             CCeEEecCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEE--eCChHH
Confidence            47899999998    4554 7889999888876543 56988999999999999999877777788999999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecC-CCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP-KTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      ++.++  +...+.+||+|++++|+|..|...++..|++++.+|++++ .++.+|++.+++.++   ++++++++++||||
T Consensus        96 al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~p~NP  170 (382)
T PRK06108         96 ALMLA--AQALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAIT---PRTRALFINSPNNP  170 (382)
T ss_pred             HHHHH--HHHhcCCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcC---ccceEEEEECCCCC
Confidence            99997  3444679999999999999999999999999999998642 356799999999886   46788889999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|+++|+++|+++|+||+|.++.++. .....+...+.+..+++++++||||.||++|+|+||++   +
T Consensus       171 tG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~---~  246 (382)
T PRK06108        171 TGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAP-GGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLV---A  246 (382)
T ss_pred             CCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCC-CCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeee---C
Confidence            9999999999999999999999999999999998751 11222222333345689999999999999999999996   7


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +.........+++.+.|.++..+|.+.      .+++++.+++++++++.+.+.|+ ++. 
T Consensus       247 ~~~~~~~------------~~~~~~~~~~~~~~~~q~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~-  306 (382)
T PRK06108        247 PPALGQV------------LEKLIEYNTSCVAQFVQRAAVAALDEG------EDFVAELVARLRRSRDHLVDALR-ALP-  306 (382)
T ss_pred             CHHHHHH------------HHHHHHhcccCCChHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHHH-hCC-
Confidence            7888877            444443345567888898988888764      23467788899999999999998 762 


Q ss_pred             CCCcccccCCcceEEecCCC-----HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHHHH
Q 012238          402 GKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                        ++++..|++|+|+|+.+.     .++++++++++||.+.||        +  |||++. +++++++++++|+++++
T Consensus       307 --~~~~~~p~~g~~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        307 --GVEVAKPDGAMYAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR-DPARLDEAVERLRRFLA  381 (382)
T ss_pred             --CCcccCCCeeEEEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence              167788899999998652     356777888889999886        1  999998 89999999999999875

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=100.00  E-value=9.1e-46  Score=374.63  Aligned_cols=350  Identities=15%  Similarity=0.161  Sum_probs=279.5

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCC------CcccccCceee
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD------NSVLKEQRVAT  154 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~------~~~~~~~~i~~  154 (467)
                      .++++|+|+.|.|..+....+ ++.+.+++.+.+.......|++..|.++||+++|+++...+      +..+++++|++
T Consensus        31 ~~~~~i~l~~g~p~~~~~~~p-~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~i  109 (412)
T PTZ00433         31 SPKSIIKLSVGDPTLDGNLLT-PAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVL  109 (412)
T ss_pred             CCCCeeecCCcCCCCcCCCCC-CHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEE
Confidence            556899999999821111223 78899999887765434789888999999999999987543      45678999999


Q ss_pred             eecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEE
Q 012238          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILL  234 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~  234 (467)
                        |+|+++++.++  +...+.+||+|+++.|+|..|...++..|++++.+++++++++++|++.+++.++   .++++++
T Consensus       110 --t~G~~~al~~~--~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~---~~~~~i~  182 (412)
T PTZ00433        110 --CSGVSHAILMA--LTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVD---DRTKALI  182 (412)
T ss_pred             --eCChHHHHHHH--HHHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhc---cCceEEE
Confidence              99999999998  4445679999999999999999999999999999998655678999999998886   4678888


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccc
Q 012238          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (467)
Q Consensus       235 i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG  314 (467)
                      +++||||||.+++.+++++|+++|+++|++||+||+|.++.+++.  ...++..+ ....++|+++||||.||+||+|+|
T Consensus       183 ~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~~i~~~SfSK~~~~pGlRlG  259 (412)
T PTZ00433        183 MTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGA--TFTSVADF-DTTVPRVILGGTAKNLVVPGWRLG  259 (412)
T ss_pred             EeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCC--Cccchhhc-cCCCceEEEccchhhcCCCCeeEE
Confidence            999999999999999999999999999999999999999987531  22223233 222368999999999999999999


Q ss_pred             eEEEecC-C----HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012238          315 AMNVVCS-S----SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ  389 (467)
Q Consensus       315 ~~~~v~~-~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~  389 (467)
                      |++  +. +    +++++.            ++..... ..+++.+.|.++..+|.+. .    ..++++.++.++++|+
T Consensus       260 ~~i--~~~p~~~~~~~~~~------------~~~~~~~-~~~~~~~~q~a~~~~l~~~-~----~~~~~~~~~~~~~~r~  319 (412)
T PTZ00433        260 WLL--LVDPHGNGGDFLDG------------MKRLGML-VCGPCSVVQAALGEALLNT-P----QEHLEQIVAKLEEGAM  319 (412)
T ss_pred             EEE--EeCCcccHHHHHHH------------HHHHhhc-cCCCChHHHHHHHHHHhcC-c----HHHHHHHHHHHHHHHH
Confidence            996  32 2    344444            5554332 3467888999998888753 1    3447788899999999


Q ss_pred             HHHHHhhhccCCCCCcccccCCcceEEecCCC----------HHHHHHHHHcccEEEeCCC--------eEEeccCChhh
Q 012238          390 KLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----------KAQSDNMTNKWHVYMTKDG--------RISLAGLSLAK  451 (467)
Q Consensus       390 ~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~----------~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~~~  451 (467)
                      .+.+.|+ +..   .+.+..|++|+|+|+.++          .++++.+++++||.+.||.        ||+|+. .+++
T Consensus       320 ~l~~~L~-~~~---~~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~-~~e~  394 (412)
T PTZ00433        320 VLYNHIG-ECI---GLSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISR-PVEV  394 (412)
T ss_pred             HHHHHHh-cCC---CCcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecC-CHHH
Confidence            9999998 642   156778999999997542          3567788877899999972        999997 6889


Q ss_pred             HHHHHHHHHHHHHhc
Q 012238          452 CEYLADAIIDSYHNV  466 (467)
Q Consensus       452 i~~~~~~l~~~l~~~  466 (467)
                      +++++++|.+++++.
T Consensus       395 l~~al~~l~~~~~~~  409 (412)
T PTZ00433        395 LREAVERIKAFCERH  409 (412)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998754

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=100.00  E-value=9.6e-46  Score=372.10  Aligned_cols=342  Identities=17%  Similarity=0.182  Sum_probs=278.5

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc-CceeeeecCCch
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSGT  161 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~ggt  161 (467)
                      ++.|+|+.|.|    ..++ ++.+.+++.+.+.... ..|.+..|.++||+++++++...++..+++ ++|++  |+|++
T Consensus        30 ~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~i--t~G~~  101 (391)
T PRK07309         30 PGILKLTLGEP----DFTT-PDHVKEAAKRAIDANQ-SHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILV--TIGAT  101 (391)
T ss_pred             CCeEEcCCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCChH
Confidence            57999999998    3433 6778888888765433 569899999999999999998777776664 68998  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      ++++++  +...+.+||+|++++|+|..|..+++..|++++.++.+ +.++.+|++.+++.+++.+++++++++++||||
T Consensus       102 ~al~~~--~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NP  178 (391)
T PRK07309        102 EALSAS--LTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTT-ENDFVLTPEMLEKAILEQGDKLKAVILNYPANP  178 (391)
T ss_pred             HHHHHH--HHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEecC-CcCCcCCHHHHHHHhhccCCCeEEEEEECCCCC
Confidence            999998  44456799999999999999999999999999999874 445789999999998754446788999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+  ..+++++++||||.||+||+|+||++   +
T Consensus       179 tG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~--~~~~~~~~--~~~~~i~~~S~SK~~g~~GlRvG~~v---~  251 (391)
T PRK07309        179 TGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGE--PHVSIAEY--LPDQTILINGLSKSHAMTGWRIGLIF---A  251 (391)
T ss_pred             CCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCC--CCCCHHHh--ccCCEEEEecChhhccCccceeEEEE---e
Confidence            99999999999999999999999999999999987431  22222222  23689999999999999999999996   7


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +.........+++.+.|.++..+|.+...      .....+++++++|+.+.+.|+ +.+ 
T Consensus       252 ~~~~~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~l~-~~~-  311 (391)
T PRK07309        252 PAEFTAQ------------LIKSHQYLVTAATTMAQFAAVEALTNGKD------DALPMKKEYIKRRDYIIEKMT-DLG-  311 (391)
T ss_pred             CHHHHHH------------HHHHHhhcccCCChHHHHHHHHHHhCChh------HHHHHHHHHHHHHHHHHHHHH-HCC-
Confidence            7888887            54443333446777889999888876522      134677888999999999998 776 


Q ss_pred             CCCcccccCCcceEEecCCC-------HHHHHHHHHcccEEEeCCC----------eEEeccCChhhHHHHHHHHHHHHH
Q 012238          402 GKDWSFILRQIGMFSFTGLN-------KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l~-------~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                         +.+..|++|+|+|+.+.       .++++++++++||.+.||.          ||+++. +.++++.++++|+++++
T Consensus       312 ---~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~i~~l~~~~~  387 (391)
T PRK07309        312 ---FKIIKPDGAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA-SMETIKEAMKRLKEYME  387 (391)
T ss_pred             ---CeecCCCeeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHH
Confidence               57788999999997542       3456677777899999872          999997 78899999999999987


Q ss_pred             hc
Q 012238          465 NV  466 (467)
Q Consensus       465 ~~  466 (467)
                      ++
T Consensus       388 ~~  389 (391)
T PRK07309        388 EH  389 (391)
T ss_pred             hh
Confidence            64

>PRK07324 transaminase; Validated

Probab=100.00  E-value=2.6e-46  Score=373.57  Aligned_cols=334  Identities=16%  Similarity=0.131  Sum_probs=275.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.++++|++|+|    .++. ++.+ +++.+.+.... ..|++..|.++||+++|+++.+     +++++|++  |+|++
T Consensus        25 ~~~~~~~~~~e~----~~~~-~~~~-~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~~~~-----~~~~~vi~--t~G~~   90 (373)
T PRK07324         25 ESCIDSLTLEEL----LALA-GKNP-EAFYQELGQKK-LTYGWIEGSPEFKEAVASLYQN-----VKPENILQ--TNGAT   90 (373)
T ss_pred             cCCCCCCcHHHH----Hhcc-Ccch-HHHHHHHhcCC-ccCCCCCCCHHHHHHHHHHhcC-----CChhhEEE--cCChH
Confidence            458999999998    3333 4455 66666665543 7899999999999999999753     34789999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      +++.++  +...+.+||+|+++.|+|..+...++..|++++.+|++++.++.+|++.+++.+.   ++++++++++||||
T Consensus        91 ~al~~~--~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~---~~~kli~i~~p~NP  165 (373)
T PRK07324         91 GANFLV--LYALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVR---PNTKLICINNANNP  165 (373)
T ss_pred             HHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCC---CCCcEEEEeCCCCC
Confidence            999998  4445779999999999999999999999999999999755667899999988876   56789999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|+++|++||++||+||+|.++.++.   ...+   +.+..+++|+++||||.||++|+|+||++   +
T Consensus       166 tG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~---~~~s---~~~~~~~~I~~~s~SK~~~~~G~RiG~i~---~  236 (373)
T PRK07324        166 TGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDG---STPS---IADLYEKGISTNSMSKTYSLPGIRVGWIA---A  236 (373)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC---CCCC---hhhccCCEEEEecchhhcCCccceeEEEe---c
Confidence            9999999999999999999999999999999998753   1222   22334678999999999999999999996   6


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      +++++++            +++.......+++.+.|.++..+|++.      ++.++++++.++++++.+.+.|+ +.+ 
T Consensus       237 ~~~li~~------------~~~~~~~~~~~~~~~~q~~a~~~l~~~------~~~l~~~~~~~~~~~~~l~~~l~-~~~-  296 (373)
T PRK07324        237 NEEVIDI------------LRKYRDYTMICAGVFDDMLASLALEHR------DAILERNRKIVRTNLAILDEWVA-KEP-  296 (373)
T ss_pred             CHHHHHH------------HHHHhCcEEecCChHHHHHHHHHHcCH------HHHHHHHHHHHHHHHHHHHHHHh-cCC-
Confidence            8888887            666665555677788888888888653      34577888999999999999998 653 


Q ss_pred             CCCcccccCCcceEEecCC-----CHHHHHHHHHcccEEEeCCC--------eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          402 GKDWSFILRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                        .+.+..|++|+|.|+.+     +.++++++++++||.+.||.        ||||+. +++.+++++++|.+++++.
T Consensus       297 --~~~~~~p~gg~~~~i~~~~~~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~-~~~~l~~~l~rl~~~l~~~  371 (373)
T PRK07324        297 --RVSYVKPKAVSTSFVKLDVDMPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCC-DTETLKKGLKKLSEFLREF  371 (373)
T ss_pred             --CceEECCCceEEEEEEeCCCCCHHHHHHHHHHhcCEEEECccccCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhc
Confidence              25677888888766633     34678888888899999982        999998 7899999999999998764

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=9.7e-46  Score=375.39  Aligned_cols=351  Identities=16%  Similarity=0.209  Sum_probs=279.3

Q ss_pred             cCCCC-CcEEecCcccCCCCCCCCchHHHHHHHHHHHh-----------cCCCCcCCCCcchHHHHHHHHHHHhCCCC--
Q 012238           79 ADTDE-KKLNLGVGAYRTEELQPYVLDVVKKAENLMLE-----------RGENKEYLPIEGLAAFNKVTAELLFGADN--  144 (467)
Q Consensus        79 ~~~~~-~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~-----------~~~~~~Y~~~~G~~~lr~aia~~l~~~~~--  144 (467)
                      ...+| ++|||++.++    ..  ..+.+.+.+++..+           ......|.+..|.++||+++|+++....+  
T Consensus        42 ~~~np~g~i~l~~aeN----~l--~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~  115 (447)
T PLN02607         42 ESHNPSGVIQMGLAEN----QV--SFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGK  115 (447)
T ss_pred             cccCCCceEEEechhh----hh--hHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCC
Confidence            33455 5999999876    22  35666666655432           01123477889999999999999987655  


Q ss_pred             cccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCCCeEEeeeecCCCCCCChhhHHHHH
Q 012238          145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIADI  223 (467)
Q Consensus       145 ~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~l  223 (467)
                      ..+++++|++  |+|++++++++  +...+.|||.|+++.|+|+.|...++ ..|+++++++++.++++.+|++.+++++
T Consensus       116 ~~v~p~~Ivi--t~G~t~al~~l--~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~  191 (447)
T PLN02607        116 ARFDPDRIVL--TAGATAANELL--TFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAY  191 (447)
T ss_pred             CCcCHHHeEE--cCChHHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHH
Confidence            3588999999  99999999997  34456799999999999999988887 5899999999865567789999999998


Q ss_pred             HcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh------cCC
Q 012238          224 KAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT------RGM  294 (467)
Q Consensus       224 ~~~---~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~------~~~  294 (467)
                      ++.   ..++++++++|||||||.+++++++++|+++|++||++||+||+|.++.+++.  +..++..+..      ..+
T Consensus       192 ~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~--~f~S~~s~~~~~~~~~~~~  269 (447)
T PLN02607        192 QEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSAS--EFVSVAEIVEARGYKGVAE  269 (447)
T ss_pred             HHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCC--CcccHHHHHhhcCCCCCcC
Confidence            742   24678899999999999999999999999999999999999999999887642  2223333321      146


Q ss_pred             eEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHH
Q 012238          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWK  374 (467)
Q Consensus       295 ~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~  374 (467)
                      +++++.||||.||++|+|+||++  +.++++++.            ++....  +..++.+.|.++..+|+++++.+   
T Consensus       270 ~v~vi~s~SK~fg~~GlRvG~iv--s~n~~l~~~------------~~~~~~--~~~~s~~~q~~~~~~L~d~~~~~---  330 (447)
T PLN02607        270 RVHIVYSLSKDLGLPGFRVGTIY--SYNDKVVTT------------ARRMSS--FTLVSSQTQHLLASMLSDEEFTE---  330 (447)
T ss_pred             cEEEEEcchhcCCCCcceEEEEE--EcCHHHHHH------------HHHHhh--cCCCCHHHHHHHHHHhCCchhHH---
Confidence            89999999999999999999996  446666665            443322  33567889999999999876643   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCH-----------HHHHHHHHcccEEEeCC----
Q 012238          375 AEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNK-----------AQSDNMTNKWHVYMTKD----  439 (467)
Q Consensus       375 ~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~-----------~~~~~ll~~~gI~v~~g----  439 (467)
                      +++.+.+++++++++.+.+.|+ +.|    +.+..+++|+|+|+++..           ++++++++++||.+.||    
T Consensus       331 ~~l~~~r~~l~~~~~~~~~~L~-~~g----i~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~  405 (447)
T PLN02607        331 NYIRTNRERLRKRYEMIVQGLR-RAG----IECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCH  405 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hCC----CCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccC
Confidence            3477889999999999999999 877    467789999999997631           23567887789999998    


Q ss_pred             ----C--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          440 ----G--RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       440 ----g--Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                          |  ||+|+..+++++++++++|.+++++
T Consensus       406 ~~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~~  437 (447)
T PLN02607        406 CSEPGWFRVCFANMSEDTLEVALKRIHRFMDR  437 (447)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence                2  9999987889999999999999864

>PRK07683 aminotransferase A; Validated

Probab=100.00  E-value=8.6e-46  Score=371.93  Aligned_cols=339  Identities=16%  Similarity=0.184  Sum_probs=278.7

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCCch
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (467)
                      ++.|+|+.|.|    ..++ ++.+.+++.+.+... ...|.+..|.++||+++++++...+|..++++ +|++  |+|++
T Consensus        28 ~~~i~l~~~~p----~~~~-~~~~~~a~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~--t~G~~   99 (387)
T PRK07683         28 DNLISLTIGQP----DFPT-PSHVKEAAKRAITEN-YTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIV--TIGAS   99 (387)
T ss_pred             CCeEEecCCCC----CCCC-CHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCChH
Confidence            57899999987    4443 678889998887654 37898899999999999999987777778888 9999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      +++.++  +...+.+||+|++++|+|..|...++..|++++.++.+ ++++.+|.+.+++.+.   ++++++++++||||
T Consensus       100 ~al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~~~~---~~~~~i~i~~p~NP  173 (387)
T PRK07683        100 EAIDIA--FRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTR-STGFRLTAEALENAIT---EKTRCVVLPYPSNP  173 (387)
T ss_pred             HHHHHH--HHHhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeecC-cccCCCCHHHHHHhcC---cCceEEEEeCCCCC
Confidence            999997  33446799999999999999999999999999999885 4567788899999886   46778899999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|+++|+++|++||+||+|+++.+++.   ..++..+.+..+++++++||||.||+||+|+||++   +
T Consensus       174 tG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~---~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~---~  247 (387)
T PRK07683        174 TGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP---HTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLF---A  247 (387)
T ss_pred             CCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC---cCChhhccCCcCCeEEEeeccccccCccceeEEEE---c
Confidence            99999999999999999999999999999999987531   22333332334689999999999999999999996   7


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      +++++++            +.........+++.+.|.++..+|.++.      .++++.+++++++++.+.+.|. +.+ 
T Consensus       248 ~~~l~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~l~-~~~-  307 (387)
T PRK07683        248 PSYLAKH------------ILKVHQYNVTCASSISQYAALEALTAGK------DDAKMMRHQYKKRRDYVYNRLI-SMG-  307 (387)
T ss_pred             CHHHHHH------------HHHHHHhccCCCChHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHHH-HcC-
Confidence            8888887            4444333344567788889988887652      2366788899999999999998 765 


Q ss_pred             CCCcccccCCcceEEecCC-----C-HHHHHHHHHcccEEEeCCC----------eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          402 GKDWSFILRQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                         +.+..+++|+|+|..+     + .+++.++++++||.+.||.          ||+++. ++++++.++++|.+++++
T Consensus       308 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~-~~~~~~~al~~l~~~l~~  383 (387)
T PRK07683        308 ---LDVEKPTGAFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAY-SIETLKEGLDRLEAFLQQ  383 (387)
T ss_pred             ---CcccCCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence               5777899999999743     2 3456677888899999971          999998 889999999999998763

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=1.4e-45  Score=378.29  Aligned_cols=348  Identities=16%  Similarity=0.170  Sum_probs=272.0

Q ss_pred             CcEEecCcccCCCCCC--CCchHHHHHHHHHHH--h-----cCCCCcCCCCcchHHHHHHHHHHHhCCCC--cccccCce
Q 012238           84 KKLNLGVGAYRTEELQ--PYVLDVVKKAENLML--E-----RGENKEYLPIEGLAAFNKVTAELLFGADN--SVLKEQRV  152 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~--p~~~~~v~~a~~~~~--~-----~~~~~~Y~~~~G~~~lr~aia~~l~~~~~--~~~~~~~i  152 (467)
                      ++|+|+..++    ..  +.+.+.+++.....+  .     -.....|.+..|.++||+++|+++....|  ..+++++|
T Consensus        47 g~i~l~~aEN----~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~I  122 (496)
T PLN02376         47 GIIQMGLAEN----QLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERV  122 (496)
T ss_pred             ceEEeecchh----hhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhE
Confidence            6999998865    32  222344444332211  0     01124588889999999999999987666  56889999


Q ss_pred             eeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CC
Q 012238          153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PG  228 (467)
Q Consensus       153 ~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~  228 (467)
                      ++  |+|+++++.++  +...+.|||.|++++|+|+.|...++ ..|++++.++++.++++++|++.++++++..   ..
T Consensus       123 vi--t~Ga~~al~~l--~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~  198 (496)
T PLN02376        123 VM--SGGATGANETI--MFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNK  198 (496)
T ss_pred             EE--ccchHHHHHHH--HHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCC
Confidence            99  99999999998  44457899999999999999999887 5899999999965567899999998775431   24


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-------CCeEEEEec
Q 012238          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-------GMELLVAQS  301 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~S  301 (467)
                      ++++++++|||||||.+++.+++++|+++|++||++||+||+|.++.|++.  +..++..+...       .+++++++|
T Consensus       199 ~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~--~~~si~~l~~~~~~~~~~~~~v~vv~S  276 (496)
T PLN02376        199 KVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGG--DFVSVAEVVNDVDISEVNVDLIHIVYS  276 (496)
T ss_pred             CeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC--CcccHHHhhccccccccCCCeEEEEEe
Confidence            678888999999999999999999999999999999999999999987642  22344344321       135778999


Q ss_pred             CccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 012238          302 YSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMA  381 (467)
Q Consensus       302 ~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~  381 (467)
                      |||.||+||+|+||++  +.++.+.+.            ++....  ...++.+.|.++..+|+++.+.   ++++++.+
T Consensus       277 ~SK~~glpGlRvG~li--~~~~~l~~~------------~~~~~~--~~~vs~~~Q~a~~~~L~d~~~~---~~~l~~~r  337 (496)
T PLN02376        277 LSKDMGLPGFRVGIVY--SFNDSVVSC------------ARKMSS--FGLVSSQTQLMLASMLSDDQFV---DNFLMESS  337 (496)
T ss_pred             ccccCCCCcceEEEEE--ECCHHHHHH------------HHHHhh--cCCCCHHHHHHHHHHhCChhHH---HHHHHHHH
Confidence            9999999999999996  445655554            333322  3357888999999999887543   34578889


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC------------HHHHHHHHHcccEEEeCC--------C-
Q 012238          382 GRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN------------KAQSDNMTNKWHVYMTKD--------G-  440 (467)
Q Consensus       382 ~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~------------~~~~~~ll~~~gI~v~~g--------g-  440 (467)
                      ++++++++.+.+.|+ +.|    +.+..+++|+|+|+++.            .++++.++++.||.+.||        | 
T Consensus       338 ~~l~~r~~~l~~~L~-~~g----i~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~  412 (496)
T PLN02376        338 RRLGIRHKVFTTGIK-KAD----IACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGW  412 (496)
T ss_pred             HHHHHHHHHHHHHHH-HCC----CcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCE
Confidence            999999999999999 776    57788999999999762            234667777789999998        2 


Q ss_pred             -eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          441 -RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       441 -Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                       ||+|+.+++++++.++++|++++.+
T Consensus       413 ~Ri~fa~~~~~~l~~al~rl~~~l~~  438 (496)
T PLN02376        413 FRICFANMDDDTLHVALGRIQDFVSK  438 (496)
T ss_pred             EEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence             9999977889999999999998853

>PRK08912 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-45  Score=371.52  Aligned_cols=340  Identities=18%  Similarity=0.169  Sum_probs=273.4

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCCch
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (467)
                      +++|+|+.|.|    ..+. ++.+.+++.+.+... ...|.+..|.++||+++++++...+|..++++ +|++  |+|++
T Consensus        26 ~~~i~l~~g~p----~~~~-p~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~--t~G~~   97 (387)
T PRK08912         26 HGAINLGQGFP----DDPG-PEDVRRAAADALLDG-SNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMV--TSGAT   97 (387)
T ss_pred             CCeEEccCCCC----CCCC-CHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEE--eCCcH
Confidence            47899999998    3343 556777776665444 37799999999999999999887777778888 9999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      +++.++  +...+.+||+|++++|+|+.|...++..|++++.++++ ++++++|++.+++.+.   ++++++++++||||
T Consensus        98 ~al~~~--~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~~~~---~~~~~v~l~~p~NP  171 (387)
T PRK08912         98 EALAAA--LLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLE-PPHWRLPRAALAAAFS---PRTKAVLLNNPLNP  171 (387)
T ss_pred             HHHHHH--HHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecC-cccCcCCHHHHHHHhC---ccceEEEEeCCCCC
Confidence            999887  44456799999999999999999999999999999984 3467899999999886   46778888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+....+++++++||||.||++|+|+||++   +
T Consensus       172 tG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~---~  246 (387)
T PRK08912        172 AGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGR--RHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVC---A  246 (387)
T ss_pred             cCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCC--CCcChhhCCCccCceEEEeechhhccCcCceeEEEe---c
Confidence            99999999999999999999999999999999887531  112222222224689999999999999999999996   7


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +.........+.+...|.++...|...      .+++++.+++++++++.+.+.|+ ..| 
T Consensus       247 ~~~~~~~------------l~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~g-  306 (387)
T PRK08912        247 APPLLRV------------LAKAHQFLTFTTPPNLQAAVAYGLGKP------DDYFEGMRADLARSRDRLAAGLR-RIG-  306 (387)
T ss_pred             CHHHHHH------------HHHHHhhccccCChHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHHHHHH-hCC-
Confidence            7888877            554444333445555677776666432      23356788999999999999999 776 


Q ss_pred             CCCcccccCCcceEEecCCC-------H-HHHHHHHHcccEEEeCC----------C--eEEeccCChhhHHHHHHHHHH
Q 012238          402 GKDWSFILRQIGMFSFTGLN-------K-AQSDNMTNKWHVYMTKD----------G--RISLAGLSLAKCEYLADAIID  461 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l~-------~-~~~~~ll~~~gI~v~~g----------g--Ris~~~~~~~~i~~~~~~l~~  461 (467)
                         +.+.++++|||+|+.+.       . ++++++++++||.+.||          +  ||+|+. ++++++.++++|.+
T Consensus       307 ---~~~~~~~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~-~~~~l~~~l~rl~~  382 (387)
T PRK08912        307 ---FPVLPSQGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK-RDATLDEAVERLAA  382 (387)
T ss_pred             ---CcccCCCcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHHH
Confidence               57778899999998552       2 45777777789999986          1  999998 78999999999999


Q ss_pred             HHHh
Q 012238          462 SYHN  465 (467)
Q Consensus       462 ~l~~  465 (467)
                      ++++
T Consensus       383 ~l~~  386 (387)
T PRK08912        383 ARRR  386 (387)
T ss_pred             HHhc
Confidence            8764

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=100.00  E-value=2.2e-45  Score=371.72  Aligned_cols=347  Identities=16%  Similarity=0.148  Sum_probs=265.8

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc----CCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeec
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER----GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (467)
                      ++++++|+.|++    ..++ ++.+.+++.+.+..    .....|.|..|.++||+++|+++...+|..+++++|++  |
T Consensus        33 ~~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~i--t  105 (409)
T PRK07590         33 EAKIIRLGIGDV----TQPL-PPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFI--S  105 (409)
T ss_pred             CCceEEecCcCC----CCCC-CHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEE--C
Confidence            457999999988    4444 67788888877643    13368999999999999999998877888899999999  9


Q ss_pred             CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCC-----------eEEeeeecCCCCCCChhhHHHHHHcC
Q 012238          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP-----------WSEYRYYDPKTVGLDFEGMIADIKAA  226 (467)
Q Consensus       158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~-----------~~~v~~~~~~~~~~d~~~l~~~l~~~  226 (467)
                      +|+++++.++   +..+.|||+|++++|+|+.|...++..|.+           ++.+++++++++.+|++.        
T Consensus       106 ~Ga~~al~~l---~~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~--------  174 (409)
T PRK07590        106 DGAKCDTGNI---LDIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPE--------  174 (409)
T ss_pred             CCHHHHHHHH---HHhcCCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCcc--------
Confidence            9999999985   445679999999999999999999999997           888988544445454321        


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc
Q 012238          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (467)
Q Consensus       227 ~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (467)
                       .+++++++++||||||.+++.+++++|+++|++||++||+||+|.++.++..  ...++..+....+++|+++||||+|
T Consensus       175 -~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~--~~~~~~~~~~~~~~vi~~~SfSK~~  251 (409)
T PRK07590        175 -EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPS--LPHSIYEIEGARECAIEFRSFSKTA  251 (409)
T ss_pred             -cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCC--CCcchhhCCCcccceEEEecCcccc
Confidence             4667888899999999999999999999999999999999999999987531  1122322212234799999999999


Q ss_pred             ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012238          307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  386 (467)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~  386 (467)
                      |+||+|+||++   +++++++.........+...+.......+.+++.+.|.++..++.+..     .+++++.++.+++
T Consensus       252 ~~pGlRiG~~i---~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~-----~~~~~~~~~~~~~  323 (409)
T PRK07590        252 GFTGTRCAYTV---VPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEG-----KAQIKELIDYYME  323 (409)
T ss_pred             CCcCceeEEEE---cCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCc-----HHHHHHHHHHHHH
Confidence            99999999996   777777620000000000111222222234578889999888887532     2347788999999


Q ss_pred             HHHHHHHHhhhccCCCCCcccccCCcceEEecCC----C-HHHHHHHHHcccEEEeCCC----------eEEeccCChhh
Q 012238          387 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAK  451 (467)
Q Consensus       387 ~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~  451 (467)
                      +|+.+.+.|+ ..+    +.+..+.+|+|+|+.+    + .+++.++++++||.+.||.          ||+++. ++++
T Consensus       324 ~r~~l~~~L~-~~~----~~~~~~~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~  397 (409)
T PRK07590        324 NAKIIREGLE-SAG----FEVYGGVNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFG-SREN  397 (409)
T ss_pred             HHHHHHHHHH-hcC----CceecCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccC-CHHH
Confidence            9999999999 775    5677788999999865    2 4567778877899999871          999866 7899


Q ss_pred             HHHHHHHHHHHH
Q 012238          452 CEYLADAIIDSY  463 (467)
Q Consensus       452 i~~~~~~l~~~l  463 (467)
                      ++.++++|.+++
T Consensus       398 l~~~l~rl~~~~  409 (409)
T PRK07590        398 VLEAMERIKKAL  409 (409)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998753

>PRK05764 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.5e-45  Score=368.91  Aligned_cols=367  Identities=20%  Similarity=0.225  Sum_probs=296.3

Q ss_pred             cccCCCCCCCCcccchHHHhhc--CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHH
Q 012238           58 RFEGVTMAPPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVT  135 (467)
Q Consensus        58 ~~~~~~~~~~~~i~~~~~~~~~--~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~ai  135 (467)
                      +++++...+++++.++.+..++  ...+++++|+.|.|    ..++ ++.+.+++.+.+.... ..|.+..|.++||+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~-~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~i   77 (393)
T PRK05764          4 LSKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEP----DFDT-PEHIKEAAIEALDDGK-TKYTPAAGIPELREAI   77 (393)
T ss_pred             hhhhhhhcCchHHHHHHHHHHHHHhccCCEEEeCCCCC----CCCC-CHHHHHHHHHHHhcCC-CCcCCCCChHHHHHHH
Confidence            4566666677776554444331  23357999999998    4444 6788898888775543 5699999999999999


Q ss_pred             HHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCC
Q 012238          136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (467)
Q Consensus       136 a~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  215 (467)
                      ++++...+|..+++++|++  |+|+++++.++  +...+.+||+|++++|+|..|..+++..|++++.++++++.++.+|
T Consensus        78 a~~~~~~~~~~~~~~~i~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d  153 (393)
T PRK05764         78 AAKLKRDNGLDYDPSQVIV--TTGAKQALYNA--FMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLT  153 (393)
T ss_pred             HHHHHHHhCCCCCHHHEEE--eCCcHHHHHHH--HHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCC
Confidence            9999777677777899999  99999999987  4445779999999999999999999999999999998655567899


Q ss_pred             hhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH-HhcCC
Q 012238          216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF-ATRGM  294 (467)
Q Consensus       216 ~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~-~~~~~  294 (467)
                      ++.+++.++   ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+ .+..+
T Consensus       154 ~~~l~~~l~---~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~  228 (393)
T PRK05764        154 VEQLEAAIT---PKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGA--EFTSIASLSPELRD  228 (393)
T ss_pred             HHHHHHhhC---ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCC--CcccHHHcCCCCcC
Confidence            999999886   4677888999999999999999999999999999999999999999887531  11223233 23346


Q ss_pred             eEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHH
Q 012238          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWK  374 (467)
Q Consensus       295 ~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~  374 (467)
                      ++++++||||.++++|+|+||++   +++++++.            +.........+++.+.|.++..+|++.      .
T Consensus       229 ~~i~~~s~SK~~~~~G~RiG~i~---~~~~~~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~------~  287 (393)
T PRK05764        229 RTITVNGFSKAYAMTGWRLGYAA---GPKELIKA------------MSKLQSHSTSNPTSIAQYAAVAALNGP------Q  287 (393)
T ss_pred             CEEEEecCcccccCccceeEEEe---cCHHHHHH------------HHHHHhhcccCCChHHHHHHHHHHcCC------h
Confidence            89999999999999999999995   78888887            655555556678888898888888631      2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCcccccCCcceEEecCCC----------HHHHHHHHHcccEEEeCCC---
Q 012238          375 AEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFILRQIGMFSFTGLN----------KAQSDNMTNKWHVYMTKDG---  440 (467)
Q Consensus       375 ~~l~~~~~~~~~~r~~l~~~l~~~~-g~~~~~~~~~~~~g~f~~~~l~----------~~~~~~ll~~~gI~v~~gg---  440 (467)
                      +++++.++.++++++.+.+.|+ ++ |    +.+..|+||+|+|+.+.          .++.+.+++++||.+.+|.   
T Consensus       288 ~~~~~~~~~~~~~~~~l~~~L~-~~~g----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~  362 (393)
T PRK05764        288 DEVEEMRQAFEERRDLMVDGLN-EIPG----LECPKPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFG  362 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-hCCC----CcccCCCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccC
Confidence            3466788889999999999998 76 4    57778899999997542          4556778887899999872   


Q ss_pred             -----eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          441 -----RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 -----Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                           ||+++. +++++++++++|.++++++
T Consensus       363 ~~~~vRis~~~-~~~~~~~~i~~l~~~~~~~  392 (393)
T PRK05764        363 APGYVRLSYAT-SLEDLEEGLERIERFLESL  392 (393)
T ss_pred             CCCEEEEEecC-CHHHHHHHHHHHHHHHHhh
Confidence                 999998 8999999999999998765

>PRK09082 methionine aminotransferase; Validated

Probab=100.00  E-value=1e-45  Score=371.42  Aligned_cols=336  Identities=14%  Similarity=0.164  Sum_probs=275.4

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCCch
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (467)
                      .++|+|+.|.+    ..+. ++.+.+++.+.+.... ..|.+..|.+++|+++++++...++..++++ +|++  |+|++
T Consensus        30 ~~~i~l~~g~~----~~~~-~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~--t~G~~  101 (386)
T PRK09082         30 HGAINLSQGFP----DFDG-PPYLVEALAYAMAAGH-NQYPPMTGVAALREAIAAKTARLYGRQYDADSEITV--TAGAT  101 (386)
T ss_pred             CCEEEecCCCC----CCCC-CHHHHHHHHHHHHcCC-CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCCHH
Confidence            47899999988    4443 6778888888775443 6798899999999999999877667666665 7988  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      +++.++  +...+.+||+|++++|+|..|...++..|++++.++.+ ++++.+|++.+++.++   ++++++++++||||
T Consensus       102 ~al~~~--~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NP  175 (386)
T PRK09082        102 EALFAA--ILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQ-PPDFRVDWQRFAAAIS---PRTRLIILNTPHNP  175 (386)
T ss_pred             HHHHHH--HHHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecC-cccccCCHHHHHHhcC---ccceEEEEeCCCCC
Confidence            999997  44456799999999999999999999999999999985 3468899999999886   46778889999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+....+++++++||||.||++|+|+||++   +
T Consensus       176 tG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~--~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv---~  250 (386)
T PRK09082        176 SGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGA--GHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCV---A  250 (386)
T ss_pred             CCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCC--CCCChhhCcCccCcEEEEeechhhccchhhhhhhhh---C
Confidence            99999999999999999999999999999999987531  112222222334689999999999999999999995   7


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +++.......+++.+.|.++..++.+.      .+++++.++.++++++.+.+.|+ +.+ 
T Consensus       251 ~~~l~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~L~-~~~-  310 (386)
T PRK09082        251 PAALSAE------------FRKVHQYNTFTVNTPAQLALADYLRAE------PEHYLELPAFYQAKRDRFRAALA-NSR-  310 (386)
T ss_pred             CHHHHHH------------HHHHHhhhcCCCChHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHHH-hCC-
Confidence            8888887            665554445567888999888888632      23466788999999999999999 765 


Q ss_pred             CCCcccccCCcceEEecCC------C-HHHHHHHHHcccEEEeCCC------------eEEeccCChhhHHHHHHHHHH
Q 012238          402 GKDWSFILRQIGMFSFTGL------N-KAQSDNMTNKWHVYMTKDG------------RISLAGLSLAKCEYLADAIID  461 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l------~-~~~~~~ll~~~gI~v~~gg------------Ris~~~~~~~~i~~~~~~l~~  461 (467)
                         +.+.+++||+|+|+.+      + .++++++++++||.+.||.            ||+|+. +++++++++++|++
T Consensus       311 ---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~-~~~~l~~~~~rl~~  385 (386)
T PRK09082        311 ---FKLLPCEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAK-QEETLDAAAERLCQ  385 (386)
T ss_pred             ---CcccCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC-CHHHHHHHHHHHhh
Confidence               5778899999999753      2 3456777788899998871            999998 88999999998875

>PRK05839 hypothetical protein; Provisional

Probab=100.00  E-value=2.6e-45  Score=366.67  Aligned_cols=339  Identities=12%  Similarity=0.085  Sum_probs=265.0

Q ss_pred             HHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCcee
Q 012238           74 SEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVA  153 (467)
Q Consensus        74 ~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~  153 (467)
                      ...++...+.++|+|+.|.|    .+++ ++.+.+++.+....  ...|.+..|.++||+++|+++...+|..+++++|+
T Consensus        15 ~~~~~~~~~~~~i~l~~~~p----~~~~-~~~~~~a~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~   87 (374)
T PRK05839         15 LKEITPNKEYKGLDLTIGEP----QFET-PKFIQDALKNNAHL--LNKYPKSAGEESLREAQRGFFKRRFKIELKENELI   87 (374)
T ss_pred             HHHhhhcCCCCeEEcCCCCC----CCCC-CHHHHHHHHHHhhc--cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEE
Confidence            33343333448999999998    4444 68888888776532  47798899999999999999988778888899999


Q ss_pred             eeecCCchhHHHHHHHHHHHh--CCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcE
Q 012238          154 TVQGLSGTGSLRLAAALIERY--FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (467)
Q Consensus       154 ~~~t~ggt~al~l~~~~l~~~--~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (467)
                      +  |+|+++++.++.  ...+  .+||.|++++|+|+.|...++..|++++.+++++++++.+|++..  .+    .+++
T Consensus        88 i--t~G~~~al~~~~--~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~--~~----~~~k  157 (374)
T PRK05839         88 P--TFGTREVLFNFP--QFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEK--EL----QEVD  157 (374)
T ss_pred             E--ecCcHHHHHHHH--HHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchh--hh----cccc
Confidence            9  999999998862  2233  378999999999999999999999999999986455566665443  22    3467


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-----hcCCeEEEEecCccCc
Q 012238          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-----TRGMELLVAQSYSKNL  306 (467)
Q Consensus       232 ~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~S~SK~~  306 (467)
                      +++++|||||||.+++.+++++|+++|+++|++||+||+|.++.++.   ...++....     ...+++|+++||||.|
T Consensus       158 ~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~---~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~  234 (374)
T PRK05839        158 LVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENT---PPPSLLEASILVGNESFKNVLVINSISKRS  234 (374)
T ss_pred             EEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCC---CCCCHhhhhcccCccccCcEEEEecccccc
Confidence            88889999999999999999999999999999999999999986542   111221111     1236899999999999


Q ss_pred             ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012238          307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  386 (467)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~  386 (467)
                      ++||+|+||++   ++++++++            +.........+.+...|.++..++.+.       +++++.++++++
T Consensus       235 ~~~GlRiG~ii---~~~~~~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~  292 (374)
T PRK05839        235 SAPGLRSGFIA---GDASILKK------------YKAYRTYLGCASPLPLQKAAAVAWLDD-------EHAEFFRNIYAK  292 (374)
T ss_pred             CCccceeEEEe---cCHHHHHH------------HHHHHhhcCCCCChHHHHHHHHHhccc-------hHHHHHHHHHHH
Confidence            99999999996   67888877            555544334467777888887777653       235677888888


Q ss_pred             HHHHHHHHhhhccCCCCCcccccCCcceEEecCC--CHHHHHHHHHcccEEEeCC----------C--eEEeccCChhhH
Q 012238          387 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--NKAQSDNMTNKWHVYMTKD----------G--RISLAGLSLAKC  452 (467)
Q Consensus       387 ~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~~~~~~~ll~~~gI~v~~g----------g--Ris~~~~~~~~i  452 (467)
                      +|+.+.+.|.        +.  .|++|+|+|+++  +.++++++++++||.+.||          +  |||++. +++++
T Consensus       293 ~~~~~~~~l~--------~~--~p~gg~fi~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~-~~~~~  361 (374)
T PRK05839        293 NLKLAREILG--------IT--IPPATFYVWLPVDNDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVY-DTPKL  361 (374)
T ss_pred             HHHHHHHhcC--------CC--CCCeeEEEEEeCCChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecC-CHHHH
Confidence            8888776553        22  678999999987  3566778777789999986          2  999987 78999


Q ss_pred             HHHHHHHHHHHHh
Q 012238          453 EYLADAIIDSYHN  465 (467)
Q Consensus       453 ~~~~~~l~~~l~~  465 (467)
                      +.++++|.+++++
T Consensus       362 ~~~l~~l~~~l~~  374 (374)
T PRK05839        362 EKALEIIKTYLEN  374 (374)
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999998753

>PRK08361 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.8e-45  Score=370.44  Aligned_cols=343  Identities=16%  Similarity=0.162  Sum_probs=281.6

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      +++|+|+.|.|    ..++ ++.+.+++.+.+.... ..|.|..|.++||+++|+++...+|..+++++|++  |+|+++
T Consensus        33 ~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~  104 (391)
T PRK08361         33 ENVISLGIGEP----DFDT-PKNIKEAAKRALDEGW-THYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIV--TAGAYE  104 (391)
T ss_pred             cCeEEcCCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEE--eCChHH
Confidence            47899999988    4544 6888888888776543 67988999999999999998766677788999999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      ++.++  +...+.+||+|++++|+|..+...++..|++++.++++++.++.+|++.+++.++   .+++++++++|||||
T Consensus       105 al~~~--~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~---~~~~~v~i~~p~NPt  179 (391)
T PRK08361        105 ATYLA--FESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELIT---KRTRMIVINYPNNPT  179 (391)
T ss_pred             HHHHH--HHHhcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc---cccEEEEEeCCCCCC
Confidence            99987  3445679999999999999999999999999999999655567899999999887   467788899999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (467)
                      |.+++.+++++|+++|++++++||+||+|.++.+++.  ...+...+  ..+++++++||||.||++|+|+||++   .+
T Consensus       180 G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~--~~~~~i~~~s~SK~~~~~GlRiG~~~---~~  252 (391)
T PRK08361        180 GATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGA--KHYPMIKY--APDNTILANSFSKTFAMTGWRLGFVI---AP  252 (391)
T ss_pred             CcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCC--CCCCHhhc--CCCCEEEEecCchhcCCcHhhhhhhc---cC
Confidence            9999999999999999999999999999999976431  11122111  23589999999999999999999996   67


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238          323 SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  402 (467)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~  402 (467)
                      +++++.            +.........+++.+.|.++..+|.++..    .+++++.+++++++++.+.+.|+ +++  
T Consensus       253 ~~~~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~L~-~~~--  313 (391)
T PRK08361        253 EQVIKD------------MIKLHAYIIGNVASFVQIAGIEALRSKES----WKAVEEMRKEYNERRKLVLKRLK-EMP--  313 (391)
T ss_pred             HHHHHH------------HHHHHhhhccCCChHHHHHHHHHhcCCcc----cHHHHHHHHHHHHHHHHHHHHHH-hCC--
Confidence            777776            54444434456788889999889987543    23577899999999999999998 763  


Q ss_pred             CCcccccCCcceEEecCC-----C-HHHHHHHHHcccEEEeCCC----------eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          403 KDWSFILRQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       403 ~~~~~~~~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      + +.+..|++|+|+|+.+     + .++.+.+++++||.+.||.          ||+++. ++++++.++++|+++++++
T Consensus       314 ~-~~~~~p~g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~l~~~  391 (391)
T PRK08361        314 H-IKVFEPKGAFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYAT-SKEKLIEAMERMEKALEEL  391 (391)
T ss_pred             C-CeecCCCEEEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHhcC
Confidence            1 6778899999999744     2 3456677777899999871          999997 7889999999999988753

>PRK08175 aminotransferase; Validated

Probab=100.00  E-value=6.3e-45  Score=366.81  Aligned_cols=345  Identities=14%  Similarity=0.160  Sum_probs=274.9

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCC
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLS  159 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~g  159 (467)
                      .++++++|+.|.|    ..+. ++.+.+++.+.+.......|.+..|.++||+++++++...+|..++++ +|++  |+|
T Consensus        27 ~~~~~i~l~~g~p----~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~--t~G   99 (395)
T PRK08175         27 RGEDIIDFSMGNP----DGPT-PPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIV--TIG   99 (395)
T ss_pred             cCCCeEEcCCCCC----CCCC-CHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--ccC
Confidence            3468999999987    3333 555666666655444457899999999999999999987778878887 7999  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +++++.++  +...+.|||+|++++|+|+.+...++..|++++.++++++.   .+++.+++.++...++++++++++||
T Consensus       100 ~~~~l~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~---~~~~~l~~~l~~~~~~~~~v~i~~p~  174 (395)
T PRK08175        100 SKEGLAHL--MLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGV---DFFNELERAIRESYPKPKMMILGFPS  174 (395)
T ss_pred             cHHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHHcCCeEEEEecccCC---CcHHHHHHHHhhccCCceEEEEeCCC
Confidence            99999987  44457799999999999999999999999999999985332   34788888887543467888999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+....+.+++++||||.||+||+|+||++  
T Consensus       175 NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~--  250 (395)
T PRK08175        175 NPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGW--KAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMV--  250 (395)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCC--CCcchhcCCCcccCEEEEeeccccccCcchhheeee--
Confidence            9999999999999999999999999999999999887531  112222221223578899999999999999999995  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                       +++++++.            +.+.......+++...|.++..+|.+.      .++++..++.++++++.+.+.|+ ..
T Consensus       251 -~~~~l~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~L~-~~  310 (395)
T PRK08175        251 -GNPELVSA------------LARIKSYHDYGTFTPLQVAAIAALEGD------QQCVRDIAEQYKRRRDVLVKGLH-EA  310 (395)
T ss_pred             -CCHHHHHH------------HHHHHhhcccCCCcHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHHH-Hc
Confidence             78888887            655554444456666788888777653      34577889999999999999999 77


Q ss_pred             CCCCCcccccCCcceEEecCCC--------HHHHHHHHHcccEEEeCC---C-------eEEeccCChhhHHHHHHHHHH
Q 012238          400 KSGKDWSFILRQIGMFSFTGLN--------KAQSDNMTNKWHVYMTKD---G-------RISLAGLSLAKCEYLADAIID  461 (467)
Q Consensus       400 g~~~~~~~~~~~~g~f~~~~l~--------~~~~~~ll~~~gI~v~~g---g-------Ris~~~~~~~~i~~~~~~l~~  461 (467)
                      +    +.+..+.+|+|+|+.+.        .++++++++++||.+.||   |       ||+++. +++.+++++++|.+
T Consensus       311 ~----~~~~~p~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~-~~~~~~~al~~l~~  385 (395)
T PRK08175        311 G----WMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIE-NRDRIRQAIRGIKA  385 (395)
T ss_pred             C----CcccCCCEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCC-CHHHHHHHHHHHHH
Confidence            6    56777889999998652        345667787789999997   1       999985 78999999999999


Q ss_pred             HHHhc
Q 012238          462 SYHNV  466 (467)
Q Consensus       462 ~l~~~  466 (467)
                      ++++.
T Consensus       386 ~l~~~  390 (395)
T PRK08175        386 MFRAD  390 (395)
T ss_pred             HHHhc
Confidence            98753

>PRK08637 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-44  Score=362.82  Aligned_cols=361  Identities=20%  Similarity=0.256  Sum_probs=275.7

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccc---cCceeeeecCCc
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK---EQRVATVQGLSG  160 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~---~~~i~~~~t~gg  160 (467)
                      +++|.++|.+.++ +.|++.+.++++..+... .....|.+..|.++||+++++++...++ .+.   .++|++  |+|+
T Consensus         4 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~~~~~~~~~I~i--t~G~   78 (388)
T PRK08637          4 TKYNATIGMATEK-GGPMYLSSLQDLLNDLTP-DEIFPYAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIV--TNAL   78 (388)
T ss_pred             cceecceeeEecC-CCcchHHHHHHHHHhhcc-ccccCCCCCCCCHHHHHHHHHHHhccCc-cccccccceeeE--ccch
Confidence            6899999999554 445557777777666432 3358899999999999999999876543 222   257888  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCCCeEEeeeecCCCCCCChhhHHHHHHc-CCCCcEEEEeCCC
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIADIKA-APGGSFILLHGCA  238 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~~~~i~i~~p  238 (467)
                      ++++.++  +...+.|||+|++++|+|+.|...+. ..|++++.+|+.+ +++++|++.+++.++. .++.+.++++++|
T Consensus        79 ~~al~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~-~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P  155 (388)
T PRK08637         79 THGLSLV--ADLFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFD-EDGGFDTDALKEALQAAYNKGKVIVILNFP  155 (388)
T ss_pred             HHHHHHH--HHHhcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEecccC-CCCcCCHHHHHHHHHhhccCCCEEEEEeCC
Confidence            9999997  33346799999999999999998764 6899999999842 3457999999998862 1245678889999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHh-----cCCeeEEeccCCCCCCCCCCCChhHH-HHHHhcCCeE--EEEecCccCcccCC
Q 012238          239 HNPTGIDPTPEQWEKIADVIQE-----KNHIPFFDVAYQGFASGSLDNDASSV-RLFATRGMEL--LVAQSYSKNLGLYA  310 (467)
Q Consensus       239 ~NPTG~~~~~~~l~~l~~~~~~-----~~~~li~Deay~~~~~~~~~~~~~~~-~~~~~~~~~~--i~~~S~SK~~~~~G  310 (467)
                      |||||.+++.+++++|+++|++     |+++||+||+|.++.+++.  ...++ ..+.+..+++  ++++||||.+++||
T Consensus       156 ~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~--~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pG  233 (388)
T PRK08637        156 NNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDS--YKESLFAALANLHSNILAVKLDGATKEEFVWG  233 (388)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCc--cchhhHHHhhcccccceEEEeccccccCCCcc
Confidence            9999999999999999999875     8999999999999987642  11121 2233344564  45579999999999


Q ss_pred             CccceEEEec---CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012238          311 ERIGAMNVVC---SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  387 (467)
Q Consensus       311 ~RiG~~~~v~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~  387 (467)
                      +|+||+++..   +++++++.        +...+.........+++.+.|.++..+|+++.+    .+++++.+..++++
T Consensus       234 lRlG~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~----~~~~~~~~~~~~~r  301 (388)
T PRK08637        234 FRVGFITFGTKAGSSQTVKEA--------LEKKVKGLIRSNISNGPHPSQSAVLRALNSPEF----DKEKQEKFQILKER  301 (388)
T ss_pred             cceEEEEEccccCCcHHHHHH--------HHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHH----HHHHHHHHHHHHHH
Confidence            9999996211   34677776        333222222223457888999999999987644    55567788889999


Q ss_pred             HHHHHHHhhhccCCCCCcccccCCcceEEecCCC----HHHHHHHHHcccEEEeCCC----eEEeccCChhhHHHHHHHH
Q 012238          388 RQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----KAQSDNMTNKWHVYMTKDG----RISLAGLSLAKCEYLADAI  459 (467)
Q Consensus       388 r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~----~~~~~~ll~~~gI~v~~gg----Ris~~~~~~~~i~~~~~~l  459 (467)
                      ++.+.+.|+ ..+.+..|.+.++++|+|+|+.+.    .++++++++++||.+.+.+    ||+++..++++++.++++|
T Consensus       302 ~~~~~~~l~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~l~~~l~~~~gv~~~~~~~~~iRi~~~~~~~~~i~~~~~~l  380 (388)
T PRK08637        302 YEKTKEVLY-DGKYDDAWQAYPFNSGYFMCLKLKGVDAEELRVHLLEKYGIGTIALNETDLRIAFSCVEEEDIPELFDSI  380 (388)
T ss_pred             HHHHHHHHH-hhCCCCCcccccccceEEEEecCChHHHHHHHHHHhhhcceEEEeccCCceEEEeecCCHHHHHHHHHHH
Confidence            999999997 654333478888999999998764    3456777777899887643    9999988899999999999


Q ss_pred             HHHHHhcC
Q 012238          460 IDSYHNVS  467 (467)
Q Consensus       460 ~~~l~~~~  467 (467)
                      .+++++++
T Consensus       381 ~~~~~~~~  388 (388)
T PRK08637        381 YKAIKDLR  388 (388)
T ss_pred             HHHHHhcC
Confidence            99998763

>PRK07777 aminotransferase; Validated

Probab=100.00  E-value=1.2e-44  Score=364.12  Aligned_cols=353  Identities=14%  Similarity=0.120  Sum_probs=278.5

Q ss_pred             CCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCc
Q 012238           66 PPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNS  145 (467)
Q Consensus        66 ~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~  145 (467)
                      +...+.++.....   .+++|||++|.|    ..+. ++.+.+++.+.+.... ..|.+..|.++||+++++++...+|.
T Consensus        10 ~~~~~~~~~~~~~---~~~~i~l~~g~p----~~~~-~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~g~   80 (387)
T PRK07777         10 GTTIFAEMSALAV---RTGAVNLGQGFP----DEDG-PPEMLEAAQEAIAGGV-NQYPPGPGIPELRAAIAAQRRRRYGL   80 (387)
T ss_pred             CccHHHHHHHHHh---hCCeEEccCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence            4444444444443   247899999998    3333 4456777777665443 67988899999999999998777777


Q ss_pred             ccccC-ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecC-CCCCCChhhHHHHH
Q 012238          146 VLKEQ-RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP-KTVGLDFEGMIADI  223 (467)
Q Consensus       146 ~~~~~-~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~l  223 (467)
                      .++++ +|++  |+|+++++.++  +...+.+||+|+++.|+|..|..+++..|++++.++++++ .++.+|++.+++.+
T Consensus        81 ~~~~~~~i~~--t~G~~~al~~~--~~~~~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~  156 (387)
T PRK07777         81 EYDPDTEVLV--TVGATEAIAAA--VLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAV  156 (387)
T ss_pred             CCCCCCcEEE--eCCcHHHHHHH--HHHhcCCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhc
Confidence            77776 7998  99999999987  4455679999999999999999999999999999998654 36789999999988


Q ss_pred             HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCc
Q 012238          224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (467)
Q Consensus       224 ~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S  303 (467)
                      .   ++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.+++.  ...++..+....+++++++|||
T Consensus       157 ~---~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~S  231 (387)
T PRK07777        157 T---PRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGA--RHLPLATLPGMRERTVTISSAA  231 (387)
T ss_pred             C---cccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCC--CcccHhhCCCCcCcEEEEeech
Confidence            6   4677888999999999999999999999999999999999999999987531  1222322222245899999999


Q ss_pred             cCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012238          304 KNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR  383 (467)
Q Consensus       304 K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~  383 (467)
                      |.||+||+|+||++   +++++++.            +.........+.+...|.++..++.+.      .++++..++.
T Consensus       232 K~~g~~GlRiG~~~---~~~~l~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~  290 (387)
T PRK07777        232 KTFNVTGWKIGWAC---GPAPLIAA------------VRAAKQYLTYVGGAPFQPAVAHALDHE------DAWVAALRDS  290 (387)
T ss_pred             hhccCcCceeEEEe---cCHHHHHH------------HHHHHhhcccCCCCHHHHHHHHHHhCC------cHHHHHHHHH
Confidence            99999999999995   77888777            554444333345666777777777653      2336678899


Q ss_pred             HHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC------C-HHHHHHHHHcccEEEeCC-----------C--eEE
Q 012238          384 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL------N-KAQSDNMTNKWHVYMTKD-----------G--RIS  443 (467)
Q Consensus       384 ~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l------~-~~~~~~ll~~~gI~v~~g-----------g--Ris  443 (467)
                      ++++++.+.+.|+ +.+    +++.+++++||+|+.+      + .++++++++++||.+.||           +  ||+
T Consensus       291 ~~~~~~~l~~~L~-~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~  365 (387)
T PRK07777        291 LQAKRDRLAAGLA-EAG----FEVHDSAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFA  365 (387)
T ss_pred             HHHHHHHHHHHHH-hCC----CCccCCCcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEE
Confidence            9999999999999 776    5778889999999753      2 456778877789999886           1  999


Q ss_pred             eccCChhhHHHHHHHHHHHH
Q 012238          444 LAGLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       444 ~~~~~~~~i~~~~~~l~~~l  463 (467)
                      |+. +++++++++++|.+..
T Consensus       366 ~~~-~~~~l~~~l~~l~~~~  384 (387)
T PRK07777        366 FCK-RDDTLDEAIRRLRALR  384 (387)
T ss_pred             ecC-CHHHHHHHHHHHHHHh
Confidence            998 7899999999998865

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.7e-44  Score=333.94  Aligned_cols=355  Identities=15%  Similarity=0.119  Sum_probs=293.6

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      +.+|.|+.|+|.-..-++. .+...+|+.+.+..+...+|.|..|++..|+++|+++++.-...++++.|++  |.|.++
T Consensus        61 k~iipl~~GDPsv~~~~~t-s~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~l--tsGC~q  137 (447)
T KOG0259|consen   61 KPILPLGHGDPSVYPCFRT-SQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVL--TSGCSQ  137 (447)
T ss_pred             ceeccCCCCCCCccccccC-CHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEE--eccchH
Confidence            3789999999844434443 7888899999888777799999999999999999999888777888999999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      |++++  +.++..||..|++|.|+|+.|...+...|.++.+|++.++++|.+|++.++..+.   ++|++++++||+||+
T Consensus       138 AIe~~--i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~D---ENT~AivviNP~NPc  212 (447)
T KOG0259|consen  138 AIELA--ISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALAD---ENTVAIVVINPNNPC  212 (447)
T ss_pred             HHHHH--HHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhc---cCeeEEEEeCCCCCC
Confidence            99998  4555679999999999999999999999999999999989999999999999988   789999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (467)
                      |.+|+.+.+++|++.|++++++||.||+|.++.|++.  ...+...|. .--.++.++|.||-|-.||||+||++  ..+
T Consensus       213 GnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~--pfvpmg~fs-siVPVitlggisKrW~VPGWRlGWi~--~hD  287 (447)
T KOG0259|consen  213 GNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDK--PFVPMGKFS-SIVPVITLGGISKRWIVPGWRLGWIA--LHD  287 (447)
T ss_pred             cccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCC--Cccchhhcc-ccCceEeecccccccccCCceeeeEE--Eec
Confidence            9999999999999999999999999999999999862  333333332 22479999999999999999999997  344


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238          323 SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  402 (467)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~  402 (467)
                      +.-+-+     .+++...+++... ...+++++.|.++-.+|....     +++.......++.+.+..++.|+ +..  
T Consensus       288 ~~gvf~-----~~~~~q~~~~~~~-~~~~p~TiiQ~AlP~IL~kTp-----~efF~k~~~~lk~na~l~y~~Lk-~IP--  353 (447)
T KOG0259|consen  288 PRGVFR-----DTKVVQGIKNFLD-IIPGPATIIQGALPDILEKTP-----EEFFDKKLSFLKSNADLCYSRLK-DIP--  353 (447)
T ss_pred             cccccc-----chHHHHHHHHHHh-ccCCccHhHHHHhHHHHHhCh-----HHHHHHHHHHHHhhHHHHHHHHh-cCC--
Confidence            322111     0112122444333 256788999999998887431     34577888999999999999999 653  


Q ss_pred             CCcccccCCcceEEecCC----------CHHHHHHHHHcccEEEeCCC--------eEEeccCChhhHHHHHHHHHHHHH
Q 012238          403 KDWSFILRQIGMFSFTGL----------NKAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       403 ~~~~~~~~~~g~f~~~~l----------~~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                      +-.....|+|.+|+|+++          +.+|+.+|.++..+.+.||.        ||+++. ..+.+++++++|++...
T Consensus       354 ~l~cp~kPeg~mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~-~~~~leea~~Rik~Fc~  432 (447)
T KOG0259|consen  354 CLTCPVKPEGCMYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVITV-EEEMLEEAFSRIKEFCD  432 (447)
T ss_pred             CcccCcCCCcceEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccCCCeEEEEEcc-ChHHHHHHHHHHHHHHH
Confidence            322367899999999875          45789999999999999992        999998 78999999999999865


Q ss_pred             h
Q 012238          465 N  465 (467)
Q Consensus       465 ~  465 (467)
                      +
T Consensus       433 R  433 (447)
T KOG0259|consen  433 R  433 (447)
T ss_pred             h
Confidence            4

>PRK07550 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-44  Score=363.01  Aligned_cols=356  Identities=17%  Similarity=0.163  Sum_probs=280.7

Q ss_pred             CCcccchHHHhhc--CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCC
Q 012238           67 PDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADN  144 (467)
Q Consensus        67 ~~~i~~~~~~~~~--~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~  144 (467)
                      +..+.++.+.++.  +.+.+.|+|+.|.|    ..++ ++.+.+++.+.+.......|.+..|.++||+++++++...+|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g   85 (386)
T PRK07550         11 PPPIPEVRAWLAGYDGADGPLIDLSQAVP----GYPP-PPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYG   85 (386)
T ss_pred             ChHHHHHHHHHHHHhhcCCCeEEeCCCCC----CCCC-CHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            3345455444431  24457999999998    3443 678888888876444446798899999999999999987778


Q ss_pred             cccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHH
Q 012238          145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK  224 (467)
Q Consensus       145 ~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~  224 (467)
                      ..+++++|++  |+|+++++.++  +...+.+||+|++++|+|..+..+++..|++++.++++++.++.+|++.+++.++
T Consensus        86 ~~~~~~~i~~--t~G~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~  161 (386)
T PRK07550         86 AAISPEQVHI--TSGCNQAFWAA--MVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT  161 (386)
T ss_pred             CCCCcceEEE--ecCcHHHHHHH--HHHhcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc
Confidence            8888999999  99999999987  3334679999999999999999999999999999999655567789999999887


Q ss_pred             cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCcc
Q 012238          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (467)
Q Consensus       225 ~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  304 (467)
                         .+++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.++..  ...+.....+.++++++++||||
T Consensus       162 ---~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK  236 (386)
T PRK07550        162 ---PRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGG--APHDLFADPDWDDTLVHLYSFSK  236 (386)
T ss_pred             ---ccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCC--CCcchhhCCCccccEEEEecchh
Confidence               4566777889999999999999999999999999999999999999875421  11111111123468999999999


Q ss_pred             CcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012238          305 NLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  384 (467)
Q Consensus       305 ~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~  384 (467)
                      .+|++|+|+||++   .++++++.            +.........+++.+.|.++..+|++.      .+++++.++.+
T Consensus       237 ~~g~~G~RiG~i~---~~~~~~~~------------~~~~~~~~~~~~s~~~q~~~~~~l~~~------~~~~~~~~~~~  295 (386)
T PRK07550        237 SYALTGHRVGAVV---ASPARIAE------------IEKFMDTVAICAPRIGQIAVAWGLPNL------ADWRAGNRAEI  295 (386)
T ss_pred             hccCcccceEeee---cCHHHHHH------------HHHHHhhcccCCCcHHHHHHHHHhccH------HHHHHHHHHHH
Confidence            9999999999996   67777776            555555555677888999998888652      34466788899


Q ss_pred             HHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-----C-HHHHHHHHHcccEEEeCCC----------eEEeccCC
Q 012238          385 KNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKDG----------RISLAGLS  448 (467)
Q Consensus       385 ~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~  448 (467)
                      +++++.+.+.|. ...   .+.+ .+.+|+|+|+.+     + .++++++++++||.+.||.          ||+++..+
T Consensus       296 ~~~~~~l~~~L~-~~~---~~~~-~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~  370 (386)
T PRK07550        296 ARRRDAFRAVFA-RLP---GWEL-LASGAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANAD  370 (386)
T ss_pred             HHHHHHHHHHHH-hCC---Ccee-CCCceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCC
Confidence            999999999998 652   1443 466899999744     2 3556777777899999961          99999778


Q ss_pred             hhhHHHHHHHHHHH
Q 012238          449 LAKCEYLADAIIDS  462 (467)
Q Consensus       449 ~~~i~~~~~~l~~~  462 (467)
                      +++++.++++|.+.
T Consensus       371 ~~~~~~~~~~l~~~  384 (386)
T PRK07550        371 VAGIGELVERLRAF  384 (386)
T ss_pred             HHHHHHHHHHHHhh
Confidence            89999999999764

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=100.00  E-value=4.8e-44  Score=361.17  Aligned_cols=365  Identities=16%  Similarity=0.132  Sum_probs=283.8

Q ss_pred             ccchHHHhhcC--CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccc
Q 012238           70 ILGVSEAFKAD--TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVL  147 (467)
Q Consensus        70 i~~~~~~~~~~--~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~  147 (467)
                      |.++.+.+++.  .+.++|+|+.|.|......++ ++.+.+++.+.+.......|.+..|.+++|+++++++....+..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~-~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~   94 (403)
T TIGR01265        16 IRAIVDNLKVKPNPEKPIIPLSHGDPSVFGNLRT-DPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKL   94 (403)
T ss_pred             HHHHHHHHHHHHhcCCCeEEeCCCCCCccCCCCC-CHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCC
Confidence            44455555433  346899999999821112333 788999998887654446798999999999999999987667777


Q ss_pred             ccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC
Q 012238          148 KEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP  227 (467)
Q Consensus       148 ~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~  227 (467)
                      ++++|++  |+|+++++.++  +...+.+||+|++++|+|..|...++..|++++.+++.+++++++|++.+++.+.   
T Consensus        95 ~~~~ii~--t~G~t~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~---  167 (403)
T TIGR01265        95 TADDVVL--TSGCSQAIEIC--IEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALAD---  167 (403)
T ss_pred             CHHHEEE--ecChHHHHHHH--HHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhC---
Confidence            8899999  99999999998  3334579999999999999999999999999999988545567899999999886   


Q ss_pred             CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       228 ~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      ++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++.  ...++..+ ....++|+++||||.|+
T Consensus       168 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~vi~~~S~SK~~~  244 (403)
T TIGR01265       168 EKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDA--PFIPMASF-ASIVPVLSLGGISKRWV  244 (403)
T ss_pred             cCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC--Cccchhhh-ccCCcEEEEeecccccC
Confidence            4677888899999999999999999999999999999999999999987631  22233233 23347999999999999


Q ss_pred             cCCCccceEEEecCCH-H-HHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238          308 LYAERIGAMNVVCSSS-D-LAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  385 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~  385 (467)
                      +||+|+||++  +.++ + +.+.        +...++.... ...+++.+.|.++..+|.+..     ..++++.+++++
T Consensus       245 ~pGlRiG~~v--~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~  308 (403)
T TIGR01265       245 VPGWRLGWII--IHDPHGIFRDT--------VLQGLKNLLQ-RILGPATIVQGALPDILENTP-----QEFFDGKISVLK  308 (403)
T ss_pred             CCcceEEEEE--EeCchhhhHHH--------HHHHHHHHhh-hhcCCChHHHHHHHHHHHhCh-----HHHHHHHHHHHH
Confidence            9999999996  3322 2 2221        2222444432 234678889999988886421     345778889999


Q ss_pred             HHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC----------HHHHHHHHHcccEEEeCCC--------eEEeccC
Q 012238          386 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----------KAQSDNMTNKWHVYMTKDG--------RISLAGL  447 (467)
Q Consensus       386 ~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~----------~~~~~~ll~~~gI~v~~gg--------Ris~~~~  447 (467)
                      ++|+.+.+.|+ .++  + +.+..|.+|+|+|+.++          .++++++++++||.+.||.        ||+|+. 
T Consensus       309 ~~~~~l~~~L~-~~~--~-~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~-  383 (403)
T TIGR01265       309 SNAELCYEELK-DIP--G-LVCPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITV-  383 (403)
T ss_pred             HHHHHHHHHHh-cCC--C-ceecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecC-
Confidence            99999999998 762  1 56667899999998652          3456777777899999982        999997 


Q ss_pred             ChhhHHHHHHHHHHHHHhc
Q 012238          448 SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       448 ~~~~i~~~~~~l~~~l~~~  466 (467)
                      +++++++++++|.+++++.
T Consensus       384 ~~~~l~~~l~~l~~~~~~~  402 (403)
T TIGR01265       384 PESMLEEACSRIKEFCERH  402 (403)
T ss_pred             CHHHHHHHHHHHHHHHHhc
Confidence            7889999999999988753

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PLN02368 alanine transaminase

Probab=100.00  E-value=1.1e-44  Score=363.17  Aligned_cols=334  Identities=16%  Similarity=0.154  Sum_probs=256.5

Q ss_pred             ccchHHHhhcCCCCCcEEecCcccCCCC-----CC----------------C-----CchHHHHHHHHHHHh-cCCCCcC
Q 012238           70 ILGVSEAFKADTDEKKLNLGVGAYRTEE-----LQ----------------P-----YVLDVVKKAENLMLE-RGENKEY  122 (467)
Q Consensus        70 i~~~~~~~~~~~~~~~i~l~~G~~~d~~-----~~----------------p-----~~~~~v~~a~~~~~~-~~~~~~Y  122 (467)
                      +...++++++ .+.++|+|++|+| |..     ++                |     .+++.+.++...... .+....|
T Consensus        26 ~~~~a~~~~~-~g~~vi~l~iG~P-d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~~a~~~l~~~~~~~~~Y  103 (407)
T PLN02368         26 LYLRASELQK-EGKKIIFTNVGNP-HALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARAKHYLSLTSGGLGAY  103 (407)
T ss_pred             HHHHHHHHHH-HhhhhhcccCCCh-hHcCCCCchHHHHHHHHhcCchhcCCccccccCCHHHHHHHHHHHhcCCCCCCCC
Confidence            3334444433 3458999999998 210     01                1     136667777655332 2234689


Q ss_pred             CCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHHhhCCCCe
Q 012238          123 LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNHKNIFNDARVPW  201 (467)
Q Consensus       123 ~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~-~~gd~Vlv~~P~y~~~~~~~~~~G~~~  201 (467)
                      ++..|.++||+++|+++.+.+|..+++++|++  |+|+++++.++  +...+ .|||.|++++|+|+.|...++..|+++
T Consensus       104 ~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~i--t~Ga~~al~~~--~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~g~~~  179 (407)
T PLN02368        104 SDSRGLPGVRKEVAEFIERRDGYPSDPELIFL--TDGASKGVMQI--LNAVIRGEKDGVLVPVPQYPLYSATISLLGGTL  179 (407)
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCChhhEEE--cccHHHHHHHH--HHHHcCCCCCEEEEeCCCCccHHHHHHHcCCEE
Confidence            99999999999999999887788888999999  99999999987  34445 589999999999999999999999999


Q ss_pred             EEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCC
Q 012238          202 SEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS  278 (467)
Q Consensus       202 ~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~  278 (467)
                      +.++++++++|++|++.+++.++..   ..++++++++|||||||.+++.+++++|+++|++||++||+||+|.++.|++
T Consensus       180 v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~  259 (407)
T PLN02368        180 VPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQD  259 (407)
T ss_pred             EEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCC
Confidence            9999976667899999999998731   1267889999999999999999999999999999999999999999999863


Q ss_pred             CCCChhHHHHHH-h------cCCeEEEEecCccCc-ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccC
Q 012238          279 LDNDASSVRLFA-T------RGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYS  350 (467)
Q Consensus       279 ~~~~~~~~~~~~-~------~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  350 (467)
                      . ....++..+. +      ..+++|+++||||.| ++||||+||++...+++++++.            +.+.... ..
T Consensus       260 ~-~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~------------~~~~~~~-~~  325 (407)
T PLN02368        260 E-RPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEE------------IYKVASI-AL  325 (407)
T ss_pred             C-CCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHH------------HHHHhcc-cC
Confidence            1 1122332321 1      234899999999998 8999999999611157778777            5554332 44


Q ss_pred             CCchHHHHHHHHHhCChh----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecC--CCHHH
Q 012238          351 NPPVHGARIVANVVGNPA----LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTG--LNKAQ  424 (467)
Q Consensus       351 ~~~~~~~~~~~~~L~~~~----~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~--l~~~~  424 (467)
                      +++.++|.++..+|++++    ..+.|.++++++++.|+++|+.+.+.|+ ++.   ++.+..|+|+||+|++  +..+.
T Consensus       326 ~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~-~~~---g~~~~~P~Gafy~~~~i~lp~~~  401 (407)
T PLN02368        326 SPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFN-SCK---NVVCNFTEGAMYSFPQIKLPPKA  401 (407)
T ss_pred             CCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC---CeEeCCCCeeeEeccCCCCCHHH
Confidence            688899999999997542    1123445567789999999999999999 762   1678889999999975  45555


Q ss_pred             HHH
Q 012238          425 SDN  427 (467)
Q Consensus       425 ~~~  427 (467)
                      +++
T Consensus       402 ~~~  404 (407)
T PLN02368        402 IEA  404 (407)
T ss_pred             HHH
Confidence            543

>PRK08363 alanine aminotransferase; Validated

Probab=100.00  E-value=5.1e-44  Score=360.67  Aligned_cols=349  Identities=17%  Similarity=0.165  Sum_probs=278.2

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      .+.++|+|+.|.|.. ..+++ ++.+.+++.+.+... ...|.+..|.++||+++++++...+|..+++++|++  |+|+
T Consensus        28 ~~~~~i~l~~g~p~~-~~~~p-~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~i--t~G~  102 (398)
T PRK08363         28 KGIKVIRLNIGDPVK-FDFQP-PEHMKEAYCRAIKEG-HNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRV--TAAV  102 (398)
T ss_pred             cCCCeEEEeCCCCCc-CCCCC-CHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEE--eCCH
Confidence            345899999999821 12333 788889988877544 367988999999999999999887788888999999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      ++++.++  +...+.+||+|++++|+|..|...++..|++++.++..+++++.+|++.+++.+.   ++++++++++|||
T Consensus       103 ~~al~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~p~N  177 (398)
T PRK08363        103 TEALQLI--FGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKIT---EKTKAIAVINPNN  177 (398)
T ss_pred             HHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCC---cceEEEEEECCCC
Confidence            9999998  4445779999999999999999999999999888843334567799999998886   4678888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      |||.+++.+++++|+++|+++|++||+||+|.++.+++   ...++..+ ....++++++||||.|++||+|+||++  +
T Consensus       178 PtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~---~~~~~~~~-~~~~~vi~~~SfSK~~~~~GlRiG~~~--~  251 (398)
T PRK08363        178 PTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEG---KHVSPGSL-TKDVPVIVMNGLSKVYFATGWRLGYIY--F  251 (398)
T ss_pred             CCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCC---cccCHHHc-CcCCcEEEEecchhccCCccceEEEEE--E
Confidence            99999999999999999999999999999999987753   11222222 234579999999999999999999996  3


Q ss_pred             -CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          321 -SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       321 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                       +++++++.        +...+...... ..+++.+.|.++..+|.+.      .+++++.+++++++++.+.+.|+ ++
T Consensus       252 ~~~~~~~~~--------l~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~------~~~l~~~~~~~~~~~~~l~~~L~-~~  315 (398)
T PRK08363        252 VDPEGKLAE--------VREAIDKLARI-RLCPNTPAQFAAIAGLTGP------MDYLEEYMKKLKERRDYIYKRLN-EI  315 (398)
T ss_pred             eCcHHHHHH--------HHHHHHHHhcc-cccCChHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence             46677766        44444333222 2357778888888888642      23467788999999999999998 76


Q ss_pred             CCCCCcccccCCcceEEecCC-------CHHHHHHHHHcccEEEeCCC----------eEEeccCChhhHHHHHHHHHHH
Q 012238          400 KSGKDWSFILRQIGMFSFTGL-------NKAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       400 g~~~~~~~~~~~~g~f~~~~l-------~~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                      +  + +.+..|+||||+|+.+       +.+++.++++++||.+.||.          |||++. +++++++++++|+++
T Consensus       316 ~--~-~~~~~p~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~  391 (398)
T PRK08363        316 P--G-ISTTKPQGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLP-PVEILEEAMDRFEEF  391 (398)
T ss_pred             C--C-CEecCCCeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHH
Confidence            3  2 6777899999999633       24556777778899999972          999986 789999999999998


Q ss_pred             HHh
Q 012238          463 YHN  465 (467)
Q Consensus       463 l~~  465 (467)
                      +++
T Consensus       392 ~~~  394 (398)
T PRK08363        392 MRE  394 (398)
T ss_pred             HHH
Confidence            865

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=100.00  E-value=2.5e-44  Score=365.89  Aligned_cols=348  Identities=16%  Similarity=0.189  Sum_probs=287.9

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc--CC-CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER--GE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~--~~-~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      .+.+++|+.|.+ +...+|  ...+.+++...+..  .. ...|.+..|.++||+++++++....|..+++++|++  |+
T Consensus        88 ~~~~i~f~~g~p-~~~~fp--~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~Iii--T~  162 (459)
T COG1167          88 DPSVIDFAGGLP-DPSLFP--LEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVI--TS  162 (459)
T ss_pred             CCceecCCCCCC-CcccCC--HHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEE--eC
Confidence            368999999987 332222  56777777776632  12 367888899999999999999877899999999999  99


Q ss_pred             CchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q 012238          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p  238 (467)
                      |+++|+.++.  ...+.|||+|++++|+|.....+++.+|++++.||++   ..|+|++.+++.++.. ....++++++.
T Consensus       163 G~q~al~l~~--~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d---~~G~~~e~le~~~~~~-~~k~~y~~P~~  236 (459)
T COG1167         163 GAQQALDLLL--RLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVD---EDGIDPEALEEALAQW-KPKAVYVTPTF  236 (459)
T ss_pred             CHHHHHHHHH--HHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCC---CCCCCHHHHHHHHhhc-CCcEEEECCCC
Confidence            9999999973  3346699999999999999999999999999999995   3479999999999864 35578888999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEE
Q 012238          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (467)
Q Consensus       239 ~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (467)
                      |||||.+++.++.++|+++|++||++||+||+|.+|.++..  ...++.. .+..++||+++||||++. ||+|+||++ 
T Consensus       237 qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~--p~~~l~~-ld~~~rViy~gSFSK~l~-PglRlG~vv-  311 (459)
T COG1167         237 QNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGP--PPPPLKA-LDAPGRVIYLGSFSKTLA-PGLRLGYVV-  311 (459)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCC--CCCChHh-hCCCCCEEEEeeehhhcc-cccceeeee-
Confidence            99999999999999999999999999999999999998742  2222322 244679999999999997 999999996 


Q ss_pred             ecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012238          319 VCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK  398 (467)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~  398 (467)
                        +++++++.            +..........++.+.|.+++..+.++.+    .++++.+++.|+++|+.+.+.|+ +
T Consensus       312 --~p~~~~~~------------~~~~k~~~~~~~s~~~Q~~la~~l~~G~~----~~hl~~lR~~y~~rr~~l~~~L~-~  372 (459)
T COG1167         312 --APPELIEK------------LLRLKQAADLGPSSLSQAALAAFLLSGHY----DRHLRRLRREYARRRDALLEALA-E  372 (459)
T ss_pred             --CCHHHHHH------------HHHHHHHhcCCCChHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHHHHHHHH-H
Confidence              88888888            66655666778899999999988886544    67799999999999999999999 6


Q ss_pred             cCCCCCcccccCCcceEEecCC----CH-HHHHHHHHcccEEEeC-CC------------eEEeccCChhhHHHHHHHHH
Q 012238          399 DKSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTK-DG------------RISLAGLSLAKCEYLADAII  460 (467)
Q Consensus       399 ~g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~-gg------------Ris~~~~~~~~i~~~~~~l~  460 (467)
                      .. ++...+..|.+|+|+|+.+    +. ++++.+++ +||.+.+ |-            ||+|+..+++++++++++|.
T Consensus       373 ~~-~~~~~~~~p~gG~flwl~l~~~~~~~~l~~~a~~-~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~  450 (459)
T COG1167         373 YL-PELATWTRPEGGLFLWLELPEGIDARELLAAALE-KGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLA  450 (459)
T ss_pred             hC-CCCeeeecCCceEEEEEEcCCCCCHHHHHHHHHH-CCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHH
Confidence            63 2346788999999999965    33 45666665 5998888 41            99999988999999999999


Q ss_pred             HHHHhc
Q 012238          461 DSYHNV  466 (467)
Q Consensus       461 ~~l~~~  466 (467)
                      +++++.
T Consensus       451 ~~~~~~  456 (459)
T COG1167         451 ALLREA  456 (459)
T ss_pred             HHHHHH
Confidence            998753

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=100.00  E-value=3.6e-44  Score=355.63  Aligned_cols=330  Identities=15%  Similarity=0.137  Sum_probs=267.7

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCCchh
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGTG  162 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt~  162 (467)
                      ++++|+.|.|    ..++ ++.+.+++.+....  ...|.+..|.++||+++++++...+|..++++ +|++  |+|+++
T Consensus         1 ~~~~~~~g~p----~~~~-~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iii--t~Gs~~   71 (350)
T TIGR03537         1 RLFDFGTGDP----KEPT-PPFIRKALIDAVPE--VSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLP--SAGSKE   71 (350)
T ss_pred             CeEeccCCCC----CCCC-CHHHHHHHHHHHhc--cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--cCChHH
Confidence            3689999988    4444 77888888887542  47798889999999999999987778888887 8999  999999


Q ss_pred             HHHHHHHHHHHhCCC---CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          163 SLRLAAALIERYFPG---AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       163 al~l~~~~l~~~~~g---d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +++++  +...+.+|   |+|+++.|+|..|...++..|++++.+++++++++.+|++.+++++.   ++++++++++||
T Consensus        72 ai~~~--~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~p~  146 (350)
T TIGR03537        72 AIFHF--PLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSIL---EETKIVWINYPH  146 (350)
T ss_pred             HHHHH--HHHHcCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhh---hccEEEEEeCCC
Confidence            99997  44456676   69999999999999999999999999998645567799999999887   467889999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||.+++.+++++|+++|+++|++||+||+|.++.++..   ..++..+  ..+++++++||||.+|++|+|+||++  
T Consensus       147 NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~---~~~~~~~--~~~~~i~~~s~SK~~g~~GlRiG~~~--  219 (350)
T TIGR03537       147 NPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEP---PHSALEV--GIENVLAFHSLSKRSGMTGYRSGFVA--  219 (350)
T ss_pred             CCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCC---CCchhhc--CcCCEEEEeecccccCCccccceeee--
Confidence            9999999999999999999999999999999998876531   1112111  24689999999999999999999995  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                       +++++++.            +.........+.+.+.|.++...+.+.       +++++.+++++++++.+.+.|+ ..
T Consensus       220 -~~~~~~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~r~~l~~~~~~~~~~l~-~~  278 (350)
T TIGR03537       220 -GDEKLISF------------LRKLRANFGVASPDFVQAAAKAAWSDD-------NHVLERRKIFKRKRDLFIEFFN-KV  278 (350)
T ss_pred             -cCHHHHHH------------HHHHHHhhccCCCHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHHHHHHHHH-HC
Confidence             78887777            555444444566667777776776643       2356778899999999999998 77


Q ss_pred             CCCCCcccccCCcceEEecCC----C-HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHH
Q 012238          400 KSGKDWSFILRQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIID  461 (467)
Q Consensus       400 g~~~~~~~~~~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~  461 (467)
                      |    +++.++++|+|+|+.+    + .++++.+++ +||.+.||        +  ||+++. +++++++++++|++
T Consensus       279 g----~~~~~~~g~~~~~~~~~~~~~~~~l~~~L~~-~gv~v~~g~~f~~~~~~~~Ri~~~~-~~~~~~~~l~~~~~  349 (350)
T TIGR03537       279 G----LEYLYPDATFYLWVKVPSGIDAKDYALRLLE-NGIVVAPGENFGSGEEGYVRVALVP-TLEECEEALRLWER  349 (350)
T ss_pred             C----CcccCCCeEEEEEEECCCCCCHHHHHHHHHH-CCEEEcCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHhc
Confidence            6    5777889999999854    2 345666665 69999986        1  999985 78999999988865

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK09265 aminotransferase AlaT; Validated

Probab=100.00  E-value=8.4e-44  Score=359.68  Aligned_cols=353  Identities=16%  Similarity=0.128  Sum_probs=270.5

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      .++++|+|+.|.| +.-+.++ ++.+.+++.+.+..  ...|++..|.++||+++|+++.......+++++|++  |+|+
T Consensus        31 ~~~~~i~l~~g~p-~~~~~~~-~~~i~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~--t~G~  104 (404)
T PRK09265         31 EGHKILKLNIGNP-APFGFEA-PDEILRDVIRNLPT--AQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYI--GNGV  104 (404)
T ss_pred             cCCCeEEecCCCC-CcCCCCC-CHHHHHHHHHHhhc--CCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEE--eCCh
Confidence            4468999999987 2212333 66777777665543  367999999999999999998765444678999999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      ++++.++  +...+.+||+|++++|+|..|...++..|++++.++++.+.++.+|++.+++.+.   .+++++++++|||
T Consensus       105 ~~~l~~~--~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~P~N  179 (404)
T PRK09265        105 SELIVMA--MQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKIT---PRTKAIVIINPNN  179 (404)
T ss_pred             HHHHHHH--HHHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhcc---ccceEEEEECCCC
Confidence            9999987  3445679999999999999999999999999999887544567899999999886   5678888999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      |||.+++.+++++|+++|+++|++||+||+|.++.++..  ...++..+ ....++++++||||.|++||+|+||++. .
T Consensus       180 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~vi~~~S~SK~~~~pGlRiG~~v~-~  255 (404)
T PRK09265        180 PTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGA--VHISIASL-APDLLCVTFNGLSKAYRVAGFRVGWMVL-S  255 (404)
T ss_pred             CCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCC--CcCCHHHc-CCCceEEEEecchhhccCcccceEEEEE-e
Confidence            999999999999999999999999999999999987531  12222222 2234789999999999999999999961 2


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      ++++..+.        +...+... .....+++.++|.++..+|.+.+..   .+ +.+.+++++++|+.+.+.|+ +++
T Consensus       256 ~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~---~~-~~~~~~~~~~~r~~~~~~L~-~~~  321 (404)
T PRK09265        256 GPKKHAKG--------YIEGLDML-ASMRLCANVPAQHAIQTALGGYQSI---NE-LILPGGRLYEQRDRAWELLN-AIP  321 (404)
T ss_pred             CchHHHHH--------HHHHHHHH-hccccCCCcHHHHHHHHHhcCchhH---HH-HHHHHHHHHHHHHHHHHHHh-cCC
Confidence            45544433        33224332 2234467788899999888754321   12 22223567778999999998 762


Q ss_pred             CCCCcccccCCcceEEecCCC---------HHHHHHHHHcccEEEeCCC----------eEEeccCChhhHHHHHHHHHH
Q 012238          401 SGKDWSFILRQIGMFSFTGLN---------KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIID  461 (467)
Q Consensus       401 ~~~~~~~~~~~~g~f~~~~l~---------~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~i~~~~~~l~~  461 (467)
                        + +.+..|++|+|+|+.++         .+++.++++++||.+.||.          ||+++. ++++++.++++|.+
T Consensus       322 --~-~~~~~p~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~-~~e~l~~~l~rl~~  397 (404)
T PRK09265        322 --G-VSCVKPKGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLP-RVDDLEEAIGRIGR  397 (404)
T ss_pred             --C-CcccCCCcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCC-CHHHHHHHHHHHHH
Confidence              2 67788999999997542         3457777778899999871          999975 88999999999999


Q ss_pred             HHHhc
Q 012238          462 SYHNV  466 (467)
Q Consensus       462 ~l~~~  466 (467)
                      +++..
T Consensus       398 ~l~~~  402 (404)
T PRK09265        398 FLSGY  402 (404)
T ss_pred             HHHHh
Confidence            88753

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=100.00  E-value=1.4e-44  Score=368.34  Aligned_cols=330  Identities=17%  Similarity=0.139  Sum_probs=265.6

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      ..+++|+.|.|    ..++ +|.+.+++.+....  ...|++..|.++||+++++++....+   .+++|++  |+|+++
T Consensus        85 ~~~i~L~~g~p----~~~~-~p~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~~Iii--t~G~~~  152 (431)
T PRK15481         85 TPLHDLAGGNP----DPQR-LPDLSRYFARLSRT--PRLYGDAPVSPELHAWAARWLRDDCP---VAFEIDL--TSGAID  152 (431)
T ss_pred             chhhhhhcCCC----ChhH-hHHHHHHHHHhhhh--hhhcCCcCCCHHHHHHHHHHHhhccC---CcCeEEE--ecCcHH
Confidence            36899999987    3333 45577777765432  35798899999999999999764322   2468999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeC-CCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG-CAHNP  241 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~-~p~NP  241 (467)
                      ++.++  +...+.|||.|++++|+|+.|...++..|++++.+|+++   .++|++.+++.++.   ++++++++ |||||
T Consensus       153 al~~~--~~~l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~---~g~~~~~l~~~~~~---~~k~i~~~p~p~NP  224 (431)
T PRK15481        153 AIERL--LCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDA---EGMQPEKLERALAQ---GARAVILTPRAHNP  224 (431)
T ss_pred             HHHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCC---CCCCHHHHHHHHhc---CCCEEEECCCCCCC
Confidence            99997  444577999999999999999999999999999999842   25899999998873   45555555 99999


Q ss_pred             CCCCCCHHHHHHHHHHHHhc-CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          242 TGIDPTPEQWEKIADVIQEK-NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~-~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      ||.+++.+++++|+++|+++ +++||+||+|.+|.++..   ...+   ....+++++++||||+|+ ||+|+||++   
T Consensus       225 TG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~---~~~~---~~~~~~vi~~~SfSK~~~-~GlRiG~~i---  294 (431)
T PRK15481        225 TGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY---HSVI---PQTTQRWALIRSVSKALG-PDLRLAFVA---  294 (431)
T ss_pred             CCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC---CCCC---cCCCCCEEEEeeeccccC-CCceeEEEe---
Confidence            99999999999999999999 999999999999976421   1111   113468999999999999 999999996   


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      +++++++.            +.........+++.+.|.++..+|+++.+    .+++++.++.++++|+.+.+.|+ +.+
T Consensus       295 ~~~~~~~~------------~~~~~~~~~~~~s~~~q~a~~~~l~~~~~----~~~l~~~~~~~~~~r~~~~~~L~-~~~  357 (431)
T PRK15481        295 SDSATSAR------------LRLRLNSGTQWVSHLLQDLVYACLTDPEY----QARLAQARLFYAQRRQKLARALQ-QYG  357 (431)
T ss_pred             CCHHHHHH------------HHHHHhccccCCCHHHHHHHHHHHhCccH----HHHHHHHHHHHHHHHHHHHHHHH-HcC
Confidence            78888887            54443333446788999999999988654    45588899999999999999999 776


Q ss_pred             CCCCcccccCCcceEEecCCC---HHHHHHHHHcccEEEeCC---------C--eEEeccCChhhHHHHHHHHHHHHH
Q 012238          401 SGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKD---------G--RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       401 ~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~g---------g--Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                          +.+..|++|+|+|+.+.   .++++.++ ++||.+.||         +  ||||+..+++++++++++|.+++.
T Consensus       358 ----~~~~~p~gg~f~~~~l~~~~~~~~~~l~-~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~  430 (431)
T PRK15481        358 ----IAIPSPGDGLNLWLPLDTDSQATALTLA-KSGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALN  430 (431)
T ss_pred             ----CccccCCCeEEEEEECCCCHHHHHHHHH-HCCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence                56668999999999773   34555655 579999996         1  999998888999999999999875

>PRK07568 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-43  Score=358.51  Aligned_cols=341  Identities=17%  Similarity=0.177  Sum_probs=272.4

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      .++|+|+.|.+    ..+. ++.+.+++.+...  ....|.+..|.+++|+++++++. .++..+++++|++  |+|+++
T Consensus        30 ~~~i~l~~~~~----~~~~-~~~~~~a~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~-~~~~~~~~~~i~~--t~G~~~   99 (397)
T PRK07568         30 IKVYHLNIGQP----DIKT-PEVFFEAIKNYDE--EVLAYSHSQGIPELREAFAKYYK-KWGIDVEPDEILI--TNGGSE   99 (397)
T ss_pred             CCEEEecCCCC----CCCC-CHHHHHHHHHHhc--CCcCcCCCCCCHHHHHHHHHHHH-HhCCCCCcceEEE--cCChHH
Confidence            46999999987    4444 6788888877643  24679999999999999999987 4577778899999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCC-CChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVG-LDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~-~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      ++.++  +...+.+||+|++++|+|..|...++..|++++.++++++.++. .|++.+++.++   ++++++++++||||
T Consensus       100 al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~---~~~~~v~i~~p~NP  174 (397)
T PRK07568        100 AILFA--MMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLIT---PKTKAILISNPGNP  174 (397)
T ss_pred             HHHHH--HHHhcCCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcC---ccceEEEEECCCCC
Confidence            99997  33346799999999999999999999999999999985333444 36788888876   56778889999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|+++|+++|++||+||+|.++.+++.  ...++..+....+++++++||||.|+++|+|+||++  +.
T Consensus       175 tG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~--~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~--~~  250 (397)
T PRK07568        175 TGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGL--KYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLI--SK  250 (397)
T ss_pred             CCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCC--CccChhhcCCCcCCEEEEecchhhccCCCcceEEEe--cC
Confidence            99999999999999999999999999999999987531  122332332235689999999999999999999995  45


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +.+.... ..+++.+.|.++..+|++.      +.++++.++.++++++.+.+.|+ +++ 
T Consensus       251 ~~~~~~~------------~~~~~~~-~~~~s~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~-  309 (397)
T PRK07568        251 NKELIAA------------AMKLCQA-RLSPPTLEQIGAAALLDTP------ESYFDEVREEYKKRRDILYEELN-KIP-  309 (397)
T ss_pred             CHHHHHH------------HHHHhhc-cCCCCcHHHHHHHHHhhCC------HHHHHHHHHHHHHHHHHHHHHHh-cCC-
Confidence            6777776            3333222 3467788999999888754      23467888999999999999998 763 


Q ss_pred             CCCcccccCCcceEEecCCC----HHHHHHHHHc-----ccEEEeCC-----------C--eEEeccCChhhHHHHHHHH
Q 012238          402 GKDWSFILRQIGMFSFTGLN----KAQSDNMTNK-----WHVYMTKD-----------G--RISLAGLSLAKCEYLADAI  459 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l~----~~~~~~ll~~-----~gI~v~~g-----------g--Ris~~~~~~~~i~~~~~~l  459 (467)
                        .+.+..|+||+|+|+.+.    .++.++++++     +||.+.||           +  ||+|+. ++++++.++++|
T Consensus       310 --~~~~~~p~g~~~~~~~l~~~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~-~~~~~~~~~~~l  386 (397)
T PRK07568        310 --GVVCEKPKGAFYIIAKLPVDDAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVL-NEEDLKRAMEIL  386 (397)
T ss_pred             --CceecCCCcceEEEEecCCCCHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeC-CHHHHHHHHHHH
Confidence              156778899999998762    3556677654     69999885           1  999986 789999999999


Q ss_pred             HHHHHhc
Q 012238          460 IDSYHNV  466 (467)
Q Consensus       460 ~~~l~~~  466 (467)
                      .+++++.
T Consensus       387 ~~~l~~~  393 (397)
T PRK07568        387 KEALEKY  393 (397)
T ss_pred             HHHHHHh
Confidence            9988764

>PRK09275 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.1e-44  Score=366.46  Aligned_cols=347  Identities=14%  Similarity=0.105  Sum_probs=257.4

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCC-CCccc-c--cCceeeeecCC
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA-DNSVL-K--EQRVATVQGLS  159 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~-~~~~~-~--~~~i~~~~t~g  159 (467)
                      ++|||++|+|    ++++ ++.+.++...+.  +  ..|++..|.+++|+++++++... .+... .  +++|++  |+|
T Consensus       101 ~~i~l~~g~p----~~~~-~~~v~e~~~~~~--~--~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~v--T~G  169 (527)
T PRK09275        101 DAVSYVRDQL----GFDA-DEFVYELVDGII--G--DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFA--VEG  169 (527)
T ss_pred             HHHhhcCCCC----CCCC-CHHHHHHHHHHh--c--CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEE--eCC
Confidence            6799999999    7766 777888555442  2  24999999999999999965443 22221 2  348998  999


Q ss_pred             chhHHHHHHHHH---HHhCCCCEEEEcCCCCcchHHHHhhCCCCeE--EeeeecCCCCCCChhhHHHHHHcCCCCcEEEE
Q 012238          160 GTGSLRLAAALI---ERYFPGAKVLISSPTWGNHKNIFNDARVPWS--EYRYYDPKTVGLDFEGMIADIKAAPGGSFILL  234 (467)
Q Consensus       160 gt~al~l~~~~l---~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~--~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~  234 (467)
                      +++++..+.+.+   ..+.|||+|++++|+|+.|..+++..|+.++  .++.+++++|.+|++.+++.++   +++++++
T Consensus       170 a~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~---~~tkai~  246 (527)
T PRK09275        170 GTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRD---PSIKALF  246 (527)
T ss_pred             HHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcC---CCCCEEE
Confidence            999999873322   1467999999999999999999888765554  4544445578999999998776   6788999


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCc
Q 012238          235 HGCAHNPTGIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER  312 (467)
Q Consensus       235 i~~p~NPTG~~~~~~~l~~l~~~~~~--~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R  312 (467)
                      ++|||||||.+++.+++++|+++|++  +|++||+||+|.+|.+.     ..++...  ..+++|+++||||.|+++|||
T Consensus       247 l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~-----~~s~~~~--~~~~~I~v~SfSK~f~mtG~R  319 (527)
T PRK09275        247 LVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDD-----FRSLFAV--LPYNTILVYSFSKYFGATGWR  319 (527)
T ss_pred             EeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhccc-----ccCHHHh--CCCCEEEEeehhhhccCcHhH
Confidence            99999999999999999999999965  49999999999998752     1122111  336899999999999999999


Q ss_pred             cceEEEecCCHH-HHhh----h----------------hhhhHHHHHHH----HHhhccCccCCCchHHHHHH-----HH
Q 012238          313 IGAMNVVCSSSD-LAAR----C----------------CEVAVIQVKSQ----LKRLARPMYSNPPVHGARIV-----AN  362 (467)
Q Consensus       313 iG~~~~v~~~~~-~~~~----~----------------~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~-----~~  362 (467)
                      +||++   ++++ +.++    -                -++.-.++.++    .+++......+++...|.++     ..
T Consensus       320 lG~i~---~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~a  396 (527)
T PRK09275        320 LGVIA---LHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFA  396 (527)
T ss_pred             Hhhhh---cCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Confidence            99995   5543 2222    0                00000011111    24555555667777777752     23


Q ss_pred             HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC---------------------
Q 012238          363 VVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN---------------------  421 (467)
Q Consensus       363 ~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~---------------------  421 (467)
                      +|...      .++++++++.++++|+.+.+.|. . +    +...+|+|+||+|+++.                     
T Consensus       397 ll~~~------~~~~~~~~~~~~~Rr~~l~~~Lg-~-~----~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~  464 (527)
T PRK09275        397 LLDEE------DAYKKAMKDIIRRRYKALYEGLG-L-P----EPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSP  464 (527)
T ss_pred             HHhCc------hHHHHHHHHHHHHHHHHHHHHcC-C-C----CcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCH
Confidence            34432      23467889999999999988774 2 2    34457899999998642                     


Q ss_pred             HHHHHHHHHcccEEEeCCC---------eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          422 KAQSDNMTNKWHVYMTKDG---------RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       422 ~~~~~~ll~~~gI~v~~gg---------Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .+++.+|++++||.+.||.         |||++..+++++..+.++|++++.++
T Consensus       465 ~~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y  518 (527)
T PRK09275        465 VDLLFRLAEETGVVLLPGGGFGGPEWSVRVSLANLNEEDYAKIGKAIRKLLDEY  518 (527)
T ss_pred             HHHHHHHHhcCCEEEeCchhhCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence            2457799999999999982         99999878899999999999998753

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=100.00  E-value=3.5e-44  Score=357.90  Aligned_cols=344  Identities=21%  Similarity=0.247  Sum_probs=279.4

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHH-HHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCCch
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENL-MLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~-~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (467)
                      ++|||+.|.+......++ ++.+.++..+ .........|++..|.++||+++|+++++.++..++++ +|++  ++|++
T Consensus         2 ~~I~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~--~~G~~   78 (363)
T PF00155_consen    2 DVINLGSNAPLLLSQNPP-PPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILV--TSGAQ   78 (363)
T ss_dssp             TEEESSSSSTSSTTSSHH-HHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEE--ESHHH
T ss_pred             CEEEEECCCCCCcccccc-hHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEE--ecccc
Confidence            689999999955434433 5666666654 33334458999999999999999999986778888888 9988  88888


Q ss_pred             hHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCC---CcEEEEeCC
Q 012238          162 GSLRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG---GSFILLHGC  237 (467)
Q Consensus       162 ~al~l~~~~l~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~---~~~~i~i~~  237 (467)
                      +++.++.  ... ..+||+|+++.|+|+.|...++..|++++.++++.++++.+|++.+++.+++.+.   +++++++++
T Consensus        79 ~~~~~~~--~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~  156 (363)
T PF00155_consen   79 AALFLLL--RLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICN  156 (363)
T ss_dssp             HHHHHHH--HHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEES
T ss_pred             cchhhhh--hcccccccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeecc
Confidence            8888862  223 4599999999999999999999999999999987677889999999999986321   467999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       238 p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                      ||||||.+++.+++++|+++|++||++||+||+|.++.++..  +..+.....+...++++++||||.||++|+|+||++
T Consensus       157 p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~  234 (363)
T PF00155_consen  157 PNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDP--DFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIV  234 (363)
T ss_dssp             SBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSS--HTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEE
T ss_pred             cccccccccccccccchhhhhcccccceeeeeceeccccCCC--ccCcccccccccccceeeeecccccccccccccccc
Confidence            999999999999999999999999999999999999998742  333333445556679999999999999999999996


Q ss_pred             EecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012238          318 VVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA  397 (467)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~  397 (467)
                         .++++++.            ++........  +.+.|.++..++.+....   .+++++.+++++++++.+.+.|+ 
T Consensus       235 ---~~~~~~~~------------l~~~~~~~~~--~~~~~~~~~~~l~~~~~~---~~~~~~~~~~l~~~~~~l~~~L~-  293 (363)
T PF00155_consen  235 ---APPELIER------------LRRFQRSGLS--SSPMQAAAAAALSDPELV---EKWLEELRERLRENRDLLREALE-  293 (363)
T ss_dssp             ---EEHHHHHH------------HHHHHHHTTS--SHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             ---chhhhhhh------------hhhccccccc--cchhhHHHHHhhhccccc---ccccccchhhHHHHHHHHHHHHH-
Confidence               57777777            6655554333  777888888888766432   23588999999999999999998 


Q ss_pred             ccCCCCCcccccCCcceEEecCCCH----HHHHHHHHcccEEEeCCC--------eEEeccCChhhHHHHHHHH
Q 012238          398 KDKSGKDWSFILRQIGMFSFTGLNK----AQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAI  459 (467)
Q Consensus       398 ~~g~~~~~~~~~~~~g~f~~~~l~~----~~~~~ll~~~gI~v~~gg--------Ris~~~~~~~~i~~~~~~l  459 (467)
                      +.+    +.+..+++|+|+|..++.    +++++|++++||.+.||.        ||+++..+++++++++++|
T Consensus       294 ~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  294 EIG----ITVLPPEAGFFLWVRLDPNDAEELAQELLEEYGILVRPGSYFGVPGYIRISLASHSEEDLEEALERL  363 (363)
T ss_dssp             HTT----SEEEHHSBSSEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEGGCSCHHHHHHHHHHH
T ss_pred             Hhh----hheeeccCccEEEEEcccchHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEeccCCHHHHHHHHhhC
Confidence            776    688888899999997643    567888887799999972        9999666999999999886

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=100.00  E-value=2.9e-43  Score=351.14  Aligned_cols=345  Identities=14%  Similarity=0.119  Sum_probs=264.8

Q ss_pred             cccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHH
Q 012238           58 RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE  137 (467)
Q Consensus        58 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~  137 (467)
                      ++++++..+...+.+....... ...++|+|+.|.|    ..+. ++.+.+++.+....   ..|.+..|.+++|+++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~p----~~~~-~~~~~~~~~~~~~~---~~Y~~~~G~~~lr~~ia~   73 (364)
T PRK07865          3 VSARLPDFPWDTLAPAKATAAA-HPDGIVDLSVGTP----VDPV-PPVIQEALAAAADA---PGYPTTAGTPELREAIVG   73 (364)
T ss_pred             ccccCCCccHHHHHHHHHHHHh-cCCCEEEcCCCCC----CCCC-CHHHHHHHHHHHhh---CCCCCccCCHHHHHHHHH
Confidence            4456666666656554444433 3347899999987    3333 67788888765432   579888999999999999


Q ss_pred             HHhCCCCcc-cccCceeeeecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCC
Q 012238          138 LLFGADNSV-LKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (467)
Q Consensus       138 ~l~~~~~~~-~~~~~i~~~~t~ggt~al~l~~~~l~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  215 (467)
                      ++...+|.. +++++|++  |+|+++++.++.  ... +.+||.|++++|+|+.|...++..|++++.++.         
T Consensus        74 ~l~~~~~~~~~~~~~I~i--t~G~~~~i~~~~--~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~---------  140 (364)
T PRK07865         74 WLARRRGVTGLDPAAVLP--VIGSKELVAWLP--TLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRADS---------  140 (364)
T ss_pred             HHHHHcCCCCCCcccEEE--ccChHHHHHHHH--HHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecCC---------
Confidence            998877776 88999999  999999999863  333 479999999999999999999999999887742         


Q ss_pred             hhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH--hcC
Q 012238          216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA--TRG  293 (467)
Q Consensus       216 ~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~--~~~  293 (467)
                      ++.+..      .+++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++.  .........  ...
T Consensus       141 ~~~l~~------~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~  212 (364)
T PRK07865        141 LTELGP------QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAE--PVSILDPRVCGGDH  212 (364)
T ss_pred             hhhCCc------ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCC--CCccccccccCCcc
Confidence            222211      4567888899999999999999999999999999999999999999887531  111110000  123


Q ss_pred             CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHH
Q 012238          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEW  373 (467)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~  373 (467)
                      +++++++||||.|++||+|+||++   +++++++.            +.........+++.+.|.++..+|.+.      
T Consensus       213 ~~~i~~~S~SK~~~~~GlRiG~i~---~~~~~~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~------  271 (364)
T PRK07865        213 TGLLAVHSLSKQSNLAGYRAGFVA---GDPALVAE------------LLEVRKHAGMMVPAPVQAAMVAALGDD------  271 (364)
T ss_pred             ceEEEEeechhccCCCceeeEEEe---cCHHHHHH------------HHHHHHhcCCCcCHHHHHHHHHHhCCH------
Confidence            589999999999999999999995   78888887            554444444567788899988888763      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC--CHHHHHHHHHcccEEEeCCC----------e
Q 012238          374 KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--NKAQSDNMTNKWHVYMTKDG----------R  441 (467)
Q Consensus       374 ~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~~~~~~~ll~~~gI~v~~gg----------R  441 (467)
                       +++++.++.++++++.+.+.|+ +.|    +.+..+++|+|+|+.+  +...+.+.++++||.+.||.          |
T Consensus       272 -~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iR  345 (364)
T PRK07865        272 -AHVREQRERYARRRAVLRPALE-AAG----FRVDHSEAGLYLWATRGEDCWDTVAWLAERGILVAPGDFYGPAGAQHVR  345 (364)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHH-HcC----CcccCCCccEEEEEeCCCCHHHHHHHHHHCCEEEeCccccCcCCCCEEE
Confidence             2356778899999999999999 776    5677889999999865  33333444556799998861          9


Q ss_pred             EEeccCChhhHHHHHHHHH
Q 012238          442 ISLAGLSLAKCEYLADAII  460 (467)
Q Consensus       442 is~~~~~~~~i~~~~~~l~  460 (467)
                      |+++. +++++++++++|+
T Consensus       346 i~~~~-~~~~~~~~~~~l~  363 (364)
T PRK07865        346 VALTA-TDERIAAAVERLA  363 (364)
T ss_pred             EEecC-CHHHHHHHHHHhh
Confidence            99987 7899999998875

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=100.00  E-value=4.8e-43  Score=353.77  Aligned_cols=342  Identities=16%  Similarity=0.125  Sum_probs=258.1

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC----CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~----~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      +++++|+|+.|++    ..++ ++.+.+++.+.+...    ....|.|..|.++||+++|+++... +  +++++|++  
T Consensus        31 ~~~~~i~l~~~~~----~~~~-~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~-~--~~~d~I~i--  100 (402)
T TIGR03542        31 PSADIIRLGIGDT----TQPL-PASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRG-R--IDPEEIFI--  100 (402)
T ss_pred             CCCCeEEcCCCCC----CCCC-CHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc-C--CCHHHEEE--
Confidence            4568999999987    4444 777888887776431    2356989999999999999986432 1  66899999  


Q ss_pred             cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCC-----------CeEEeeeecCCCCCCChhhHHHHHHc
Q 012238          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV-----------PWSEYRYYDPKTVGLDFEGMIADIKA  225 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~-----------~~~~v~~~~~~~~~~d~~~l~~~l~~  225 (467)
                      |+|+++++.++   ...+.+||+|++++|+|..|...++..|+           +++.++++++.++.+|++.      .
T Consensus       101 t~Ga~~al~~l---~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~  171 (402)
T TIGR03542       101 SDGAKCDVFRL---QSLFGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE------E  171 (402)
T ss_pred             CCCcHHHHHHH---HHhcCCCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCccc------c
Confidence            99999999985   34567999999999999999999999999           8888888544444444321      1


Q ss_pred             CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC
Q 012238          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (467)
Q Consensus       226 ~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (467)
                        .+++++++++||||||.+++.+++++|+++|+++|++||+||+|.+|.+++.  ...++..+....+++|+++||||.
T Consensus       172 --~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~~~~~~~vi~~~SfSK~  247 (402)
T TIGR03542       172 --PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPS--LPHSIFEIPGAKECAIEFRSFSKT  247 (402)
T ss_pred             --CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCC--CCcchhhCCCCcccEEEEecCccc
Confidence              4567888899999999999999999999999999999999999999987531  112222221223578999999999


Q ss_pred             cccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238          306 LGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  385 (467)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~  385 (467)
                      ||+||+|+||++   ++++++...    ...+...+.......+.+++.+.|.++..++.+..+     +.+.+.++.++
T Consensus       248 ~g~pGlRiG~~i---~~~~l~~~~----~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~-----~~~~~~~~~~~  315 (402)
T TIGR03542       248 AGFTGVRLGWTV---VPKELTYAD----GHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGL-----QPILEAISYYM  315 (402)
T ss_pred             cCCCCcceEEEE---ecHHHhhcc----hhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcch-----hHHHHHHHHHH
Confidence            999999999996   666665110    000111122222222445778889888888876533     22455678899


Q ss_pred             HHHHHHHHHhhhccCCCCCcccccCCcceEEecCC----C-HHHHHHHHHcccEEEeCCC----------eEEeccCChh
Q 012238          386 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLA  450 (467)
Q Consensus       386 ~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~  450 (467)
                      ++|+.+.+.|+ +.+    +++..+.+|+|+|+.+    + .++++++++++||.+.||.          ||+++. +++
T Consensus       316 ~~~~~~~~~L~-~~~----~~~~~~~~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~  389 (402)
T TIGR03542       316 ENARILRKALE-AAG----FKVYGGEHAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFG-KRE  389 (402)
T ss_pred             HHHHHHHHHHH-hcC----ceecCCCceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHH
Confidence            99999999998 765    5667778899999865    2 3567788877899999971          999877 889


Q ss_pred             hHHHHHHHHHHHH
Q 012238          451 KCEYLADAIIDSY  463 (467)
Q Consensus       451 ~i~~~~~~l~~~l  463 (467)
                      +++.++++|++++
T Consensus       390 ~l~~~l~~l~~~~  402 (402)
T TIGR03542       390 NIVEACERIKEAL  402 (402)
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999998763

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.3e-42  Score=347.39  Aligned_cols=333  Identities=16%  Similarity=0.223  Sum_probs=258.5

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-CCcCCCCcchHHHHHHHHHHHhCCC--CcccccCceeeeecCC
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGAD--NSVLKEQRVATVQGLS  159 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~--~~~~~~~~i~~~~t~g  159 (467)
                      +..++|+.|+|    .+++ ++.+.+++.+.+..+. ...| |..|.++||+++|+++...+  +..+++++|++  |+|
T Consensus        28 ~~~~~l~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~Y-~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~i--t~G   99 (374)
T PRK02610         28 IQLDRLDTNEF----PYDL-PPDLKQKLAWLYQQGIESNRY-PDGGHEALKQAIAEYVNESAAGSSQITPANISV--GNG   99 (374)
T ss_pred             cceeEecCCCC----CCCC-CHHHHHHHHHHHhhcccccCC-CCCchHHHHHHHHHHhCccccccCCCCHHHEEE--cCC
Confidence            35899999988    5554 7889999988765432 2568 56799999999999987665  46688999999  999


Q ss_pred             chhHHHHHHHHHHHhCCCC-EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC-CCCcEEEEeCC
Q 012238          160 GTGSLRLAAALIERYFPGA-KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-PGGSFILLHGC  237 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd-~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~-~~~~~~i~i~~  237 (467)
                      +++++.++  +...+.+|| +|++++|+|..|...++..|++++.++++ ++++++|++.+++.+++. ..+++++++++
T Consensus       100 a~~al~~~--~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~  176 (374)
T PRK02610        100 SDELIRSL--LIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRD-PETFEIDLAAAQSAIEQTQNPPVRVVFVVH  176 (374)
T ss_pred             hHHHHHHH--HHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCC-cccCCCCHHHHHHHHHhhcCCCceEEEEeC
Confidence            99999876  444566786 89999999999999999999999999974 446899999999988631 13678888899


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       238 p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                      ||||||.+++.+++++|+++|  +|++||+||+|.+|.+.    .  .+..+ ...+++|+++||||.||+||+|+||++
T Consensus       177 P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~----~--~~~~~-~~~~~~ivi~SfSK~~g~~GlRiG~~v  247 (374)
T PRK02610        177 PNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQT----T--LVGEL-AQHPNWVILRTFSKAFRLAAHRVGYAI  247 (374)
T ss_pred             CCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCcc----c--hHHHH-hcCCCEEEEEecchhccCcccceeeee
Confidence            999999999999999999876  49999999999998642    1  12122 334678999999999999999999996


Q ss_pred             EecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012238          318 VVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA  397 (467)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~  397 (467)
                         +++++++.            +.+...  ..+.+.+.|.++..+|++.      +.+++.+++.++ .|+.+.+.|+ 
T Consensus       248 ---~~~~l~~~------------l~~~~~--~~~~~~~~q~a~~~~l~~~------~~~~~~~~~~~~-~r~~l~~~L~-  302 (374)
T PRK02610        248 ---GHPELIAV------------LEKVRL--PYNLPSFSQLAAQLALEHR------QELLAAIPEILQ-ERDRLYQALQ-  302 (374)
T ss_pred             ---cCHHHHHH------------HHHhcC--CCCCCHHHHHHHHHHhcCH------HHHHHHHHHHHH-HHHHHHHHHH-
Confidence               78888887            555543  2356788999998888764      222344444444 4777888888 


Q ss_pred             ccCCCCCcccccCCcceEEecCC----CHHHHHHHHHcccEEEeCCC---eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          398 KDKSGKDWSFILRQIGMFSFTGL----NKAQSDNMTNKWHVYMTKDG---RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       398 ~~g~~~~~~~~~~~~g~f~~~~l----~~~~~~~ll~~~gI~v~~gg---Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .++  + +.+ .|++|+|+|+.+    +.+.+.+.++++||.+.++.   ||+++.  .+++++++++|+++++++
T Consensus       303 ~~~--~-~~~-~p~~g~f~~~~l~~~~~~~~~~~~l~~~gi~v~~~~~~lRls~~~--~~~~~~~l~~l~~~l~~~  372 (374)
T PRK02610        303 ELP--Q-LRV-WPSAANFLYLRLSQDAALAALHQALKAQGTLVRHTGGGLRITIGT--PEENQRTLERLQAALTQL  372 (374)
T ss_pred             hCC--C-cEe-CCCcceEEEEeCCCCCCHHHHHHHHHHCCEEEEeCCCeEEEeCCC--HHHHHHHHHHHHHHHhhc
Confidence            763  1 454 477889999865    33444444556799998753   999986  467899999999998765

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-42  Score=324.25  Aligned_cols=347  Identities=16%  Similarity=0.131  Sum_probs=291.5

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      ++++++.|.+.+.    +++. +|.|.+|+++.++.+. .+|+  .+.+++-+++++|...+++..++++.|++  +.|.
T Consensus        23 g~~DvlPmWVADM----Df~~-pp~i~~Al~~rvdhGv-fGY~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~~--~p~V   92 (388)
T COG1168          23 GNEDVLPMWVADM----DFPT-PPEIIEALRERVDHGV-FGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVF--VPGV   92 (388)
T ss_pred             CCCCcceeeeecc----cCCC-CHHHHHHHHHHHhcCC-CCCC--CCCHHHHHHHHHHHHHhcCCCCCcceEEE--cCcc
Confidence            3468999999988    7775 8999999999998775 8884  67889999999999999999999999999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeec-CCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      ..++.++  +.....|||.|++..|.|+++.+.++..|.+++..|+.. +..+.+|++.|++.+.+  ++.+++++||||
T Consensus        93 Vpgi~~~--I~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~--~~vkl~iLCnPH  168 (388)
T COG1168          93 VPGISLA--IRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVD--ERVKLFILCNPH  168 (388)
T ss_pred             hHhHHHH--HHHhCcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhc--CCccEEEEeCCC
Confidence            9999997  444456999999999999999999999999999999863 44567899999999985  566899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcCCeEEEEecCccCcccCCCccceEEE
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAERIGAMNV  318 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (467)
                      ||||.+++.++|++|.++|++||+.||+||+++++.+.+.  ...+...+. ...++.+.+.|-||+|+++|+.+++++ 
T Consensus       169 NP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~--~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~I-  245 (388)
T COG1168         169 NPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGH--KHIPFASLSERFADNSITLTSASKTFNLAGLKCAYII-  245 (388)
T ss_pred             CCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCC--CccchhhcChhhhcceEEEeeccccccchhhhheeEE-
Confidence            9999999999999999999999999999999999998752  222221111 224789999999999999999999997 


Q ss_pred             ecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012238          319 VCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK  398 (467)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~  398 (467)
                       ..++++.++        +.+++++   ....+++.++..+...+.+++      ...+++..+.++.+++++.+.+. +
T Consensus       246 -i~n~~lr~~--------~~~~l~~---~~~~~~n~lg~~A~~aAY~~G------~~WLd~L~~yl~~N~~~~~~~l~-~  306 (388)
T COG1168         246 -ISNRELRAK--------FLKRLKR---NGLHGPSALGIIATEAAYNQG------EPWLDELLEYLKDNRDYVADFLN-K  306 (388)
T ss_pred             -ecCHHHHHH--------HHHHHHH---hcCCCCchHHHHHHHHHHHhc------hHHHHHHHHHHHHHHHHHHHHHH-h
Confidence             588887666        5554543   345578888888888777766      33478899999999999999998 4


Q ss_pred             cCCCCCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHH
Q 012238          399 DKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       399 ~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                      . +|+ +++..|+|.+.+|+++     +. +..+.++++.+|.+.+|        |  |+++++ +.+-+++++++|+.+
T Consensus       307 ~-~P~-v~v~~p~gTYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~ac-pr~~L~eal~ri~~a  383 (388)
T COG1168         307 H-LPG-VKVTEPQGTYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFAC-PRAILEEALERLKRA  383 (388)
T ss_pred             h-CCC-cEEecCCCceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCC-CHHHHHHHHHHHHHH
Confidence            4 233 7899999998899854     54 56778889999999998        2  999999 899999999999999


Q ss_pred             HHhc
Q 012238          463 YHNV  466 (467)
Q Consensus       463 l~~~  466 (467)
                      +++.
T Consensus       384 l~~~  387 (388)
T COG1168         384 LKKR  387 (388)
T ss_pred             Hhcc
Confidence            8875

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=6.7e-43  Score=347.48  Aligned_cols=324  Identities=15%  Similarity=0.150  Sum_probs=256.6

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      ..++|+|+.|++    .+++ ++.+++++.+.+..  ...| |..|.++||+++++++.      +++++|++  |+|++
T Consensus        28 ~~~~i~l~~nen----~~~~-~~~v~~a~~~~~~~--~~~Y-p~~g~~~Lr~aia~~~~------~~~~~I~v--t~Gs~   91 (366)
T PRK01533         28 DHSFVKLASNEN----PFGC-SPRVLDELQKSWLD--HALY-PDGGATTLRQTIANKLH------VKMEQVLC--GSGLD   91 (366)
T ss_pred             CCceEEeCCCCC----CCCC-CHHHHHHHHHHHHh--cCcC-CCCCHHHHHHHHHHHhC------CCcceEEE--CCCHH
Confidence            357899999987    5655 77888888876543  1345 77899999999999973      34889999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      +++.++  +...+.+||+|+++.|+|+.|...++..|++++.++++   ++++|++.+++.++   ++++++++++||||
T Consensus        92 e~i~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~---~~~~d~~~l~~~~~---~~~~~v~i~~P~NP  163 (366)
T PRK01533         92 EVIQII--SRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN---NGVYDLDEISSVVD---NDTKIVWICNPNNP  163 (366)
T ss_pred             HHHHHH--HHHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC---CCCcCHHHHHHHhC---cCCcEEEEeCCCCC
Confidence            999997  34446799999999999999999999999999999983   34699999999886   46778889999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|+++|++++ ++|+||+|.+|.++.   +..+.....+..+++|+++||||.||+||+|+||++   +
T Consensus       164 TG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~---~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i---~  236 (366)
T PRK01533        164 TGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAK---DFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAV---G  236 (366)
T ss_pred             CCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccc---cCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHh---C
Confidence            999999999999999998776 577799999887642   111122233455789999999999999999999995   7


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +.+...  ..+++.++|.++..+|++..+       ++..++.++++|+++.+.++ .+| 
T Consensus       237 ~~~~~~~------------l~~~~~--~~~~~~~~q~aa~~~l~~~~~-------~~~~~~~~~~~r~~~~~~l~-~~g-  293 (366)
T PRK01533        237 HEELIEK------------LNVVRL--PFNVSSLAQKAATIAFGDDEF-------IEEIVRVNTEGLRQYESFCK-ENE-  293 (366)
T ss_pred             CHHHHHH------------HHHhcC--CCCcCHHHHHHHHHHhCCHHH-------HHHHHHHHHHHHHHHHHHHH-hCC-
Confidence            8888887            655543  346888999999999976533       34556677777888888888 776 


Q ss_pred             CCCcccccCCcceEEecCC-CHHHHHHHHHcccEEEeCCC---eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          402 GKDWSFILRQIGMFSFTGL-NKAQSDNMTNKWHVYMTKDG---RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l-~~~~~~~ll~~~gI~v~~gg---Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                         +.+.++++ .|+|+.+ +.+.+.+.+.++||.+++..   ||+++.  .+++++++++|+++++.
T Consensus       294 ---~~~~~~~~-nf~~~~~~~~~~~~~~l~~~GI~Vr~~~~~iRis~~~--~~~~~~l~~al~~~~~~  355 (366)
T PRK01533        294 ---IPFYQSQT-NFIFLPVENGGEIYEACAHAGFIIRPFPNGVRITVGT--REQNEGVISVLQQHFEN  355 (366)
T ss_pred             ---CccCCCcC-cEEEEeCCCHHHHHHHHHHCCcEEccCCCceEEeCCC--HHHHHHHHHHHHHHHHh
Confidence               46667764 5788876 33334444445799998864   999985  68999999999998764

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=100.00  E-value=2.6e-42  Score=350.77  Aligned_cols=348  Identities=12%  Similarity=0.070  Sum_probs=247.8

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHH-HHhCCCCcc-cccC--ceeeeecCC
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE-LLFGADNSV-LKEQ--RVATVQGLS  159 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~-~l~~~~~~~-~~~~--~i~~~~t~g  159 (467)
                      ++|+|++|+|    ++++ ++.+.+ +.+.+..   ..|+++.|..++|+++++ ++....+.. ..++  +|++  |.|
T Consensus        95 ~~i~l~~g~p----~~~~-~~~~~~-~~~~~~~---~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~i--t~G  163 (521)
T TIGR03801        95 DIISYVIDQL----GFDP-DAFLYE-MCDGIIG---DNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFA--VEG  163 (521)
T ss_pred             HHHhhcCCCC----CCCC-CHHHHH-HHHHhhc---CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEE--eCC
Confidence            6799999999    6664 555544 4443322   258767777777777775 544433322 2333  8988  999


Q ss_pred             chhHHHHHHHHHH---HhCCCCEEEEcCCCCcchHHHHhhC--CCCeEEeeeecCCC-----CCCChhhHHHHHHcCCCC
Q 012238          160 GTGSLRLAAALIE---RYFPGAKVLISSPTWGNHKNIFNDA--RVPWSEYRYYDPKT-----VGLDFEGMIADIKAAPGG  229 (467)
Q Consensus       160 gt~al~l~~~~l~---~~~~gd~Vlv~~P~y~~~~~~~~~~--G~~~~~v~~~~~~~-----~~~d~~~l~~~l~~~~~~  229 (467)
                      +++++..+...+.   .+.|||+|+++.|+|+.|..+++..  |++++.++.+++.+     |.+|++.+++.++   ++
T Consensus       164 at~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~---~~  240 (521)
T TIGR03801       164 GTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRD---PS  240 (521)
T ss_pred             HHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcC---CC
Confidence            9999998733221   4679999999999999999998775  66777777753333     8899999988765   67


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc--CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~--~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      +++++++|||||||.+++.+++++|+++|++|  |++||+||+|.+|.+.     ..++...  ..+++|+++||||.||
T Consensus       241 ~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~-----~~sl~~~--~~~~vI~v~SfSK~fg  313 (521)
T TIGR03801       241 IKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDD-----FRSLFAE--LPYNTIGVYSFSKYFG  313 (521)
T ss_pred             CcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhccc-----ccchhhh--CCCCEEEEEcchhhcc
Confidence            88999999999999999999999999999986  9999999999998752     1122121  2358999999999999


Q ss_pred             cCCCccceEEEecCCHHHHhh--------------------hhhhhHHH----HHHHHHhhccCccCCCchHHHH--H--
Q 012238          308 LYAERIGAMNVVCSSSDLAAR--------------------CCEVAVIQ----VKSQLKRLARPMYSNPPVHGAR--I--  359 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~--------------------~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~--~--  359 (467)
                      ++|||+||++  ..++.+.++                    ..+|.-.+    +....+++....+.+.+...|.  +  
T Consensus       314 ~~G~RlG~i~--~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~  391 (521)
T TIGR03801       314 ATGWRLGTIA--LHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALF  391 (521)
T ss_pred             Cchhhhhhhh--cCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHH
Confidence            9999999996  333322211                    00000001    1111233344444555555554  3  


Q ss_pred             -HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC-----------------
Q 012238          360 -VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----------------  421 (467)
Q Consensus       360 -~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~-----------------  421 (467)
                       +..+|...      ...++++++.++++++.+.+.|. . .    +...+++|+||+|+++.                 
T Consensus       392 a~~all~~~------~~y~~~~~~~~~~R~~~l~~~Lg-~-~----~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~  459 (521)
T TIGR03801       392 SLFALMDKE------NAYKAETKDICRRREKLLFRGLG-L-P----LQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKK  459 (521)
T ss_pred             HHHHHhccc------hhHHHHHHHHHHHHHHHHHHhcC-C-C----CcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhc
Confidence             33444432      23467888999999999988774 1 1    33457899999998652                 


Q ss_pred             ----HHHHHHHHHcccEEEeCCC---------eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          422 ----KAQSDNMTNKWHVYMTKDG---------RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       422 ----~~~~~~ll~~~gI~v~~gg---------Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                          .+++.+|++++||.+.||.         |||++.+++++++++.++|+++++++
T Consensus       460 ~~~~~~~~~~L~~e~gV~v~PG~~Fg~~~~~vRisla~l~~~~~~~~~~rl~~~~~~~  517 (521)
T TIGR03801       460 NYSPVDVLFRLAEETGIVLLPGGGFGGPEWSVRVSLANLNEYDYAEIGRAIRKILDEY  517 (521)
T ss_pred             cCCHHHHHHHHHHhCCEEEeCchhcCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence                2457789999999999982         99999878999999999999998653

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=100.00  E-value=4.7e-42  Score=341.25  Aligned_cols=332  Identities=14%  Similarity=0.122  Sum_probs=256.3

Q ss_pred             ccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcc-cc
Q 012238           70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSV-LK  148 (467)
Q Consensus        70 i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~-~~  148 (467)
                      +.+...+.+. ..+++|||+.|.|    ..++ ++.+.+++.+...   ...|.+..|.++||+++++++...++.. ++
T Consensus         9 ~~~~~~~~~~-~~~~~i~l~~~~p----~~~~-~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~   79 (357)
T TIGR03539         9 LAPYKAKAAS-HPDGIVDLSVGTP----VDPV-PPLIRAALAAAAD---APGYPQTWGTPELREAIVDWLERRRGVPGLD   79 (357)
T ss_pred             HHHHHHHhhh-CCCCeEEccCCCC----CCCC-CHHHHHHHHHHHh---hCCCCcccCCHHHHHHHHHHHHHhcCCCCCC
Confidence            3344444432 3357899999987    3443 6778888877643   3679889999999999999998877876 88


Q ss_pred             cCceeeeecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC
Q 012238          149 EQRVATVQGLSGTGSLRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP  227 (467)
Q Consensus       149 ~~~i~~~~t~ggt~al~l~~~~l~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~  227 (467)
                      +++|++  |+|+++++.++  +... +.+||.|++++|+|+.|...++..|++++.++         |++.+    ..  
T Consensus        80 ~~~I~i--t~G~~~~i~~~--~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~---------~~~~l----~~--  140 (357)
T TIGR03539        80 PTAVLP--VIGTKELVAWL--PTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAAD---------DPTEL----DP--  140 (357)
T ss_pred             cCeEEE--ccChHHHHHHH--HHHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccC---------Chhhc----Cc--
Confidence            999999  99999999986  3333 46999999999999999999999999887763         22222    21  


Q ss_pred             CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH--HhcCCeEEEEecCccC
Q 012238          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF--ATRGMELLVAQSYSKN  305 (467)
Q Consensus       228 ~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~S~SK~  305 (467)
                      .+++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++.  ....+...  ....+++++++||||.
T Consensus       141 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~~vi~~~S~SK~  218 (357)
T TIGR03539       141 VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGR--PVSILDPRVCGGDHTGLLAVHSLSKR  218 (357)
T ss_pred             cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCC--CccceecccCCCccccEEEEeccccc
Confidence            4667888899999999999999999999999999999999999998887531  11111000  0123579999999999


Q ss_pred             cccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238          306 LGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  385 (467)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~  385 (467)
                      |+++|+|+||++   +++++++.            +.+.......+++.+.|.++..+|.+.       .+++..++.++
T Consensus       219 ~~~~G~R~G~~i---~~~~~~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~  276 (357)
T TIGR03539       219 SNLAGYRAGFVA---GDPALVAE------------LLTVRKHAGLMVPAPVQAAMVAALGDD-------GHVAEQKARYA  276 (357)
T ss_pred             cCCCceeEEEEe---cCHHHHHH------------HHHHHhhcccCCCHHHHHHHHHHcCCH-------HHHHHHHHHHH
Confidence            999999999995   78888877            555444444567888899888888753       23567788999


Q ss_pred             HHHHHHHHHhhhccCCCCCcccccCCcceEEecCC--CHHHHHHHHHcccEEEeCCC----------eEEeccCChhhHH
Q 012238          386 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--NKAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCE  453 (467)
Q Consensus       386 ~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~i~  453 (467)
                      ++++.+.+.|+ +.|    +.+.+|++|+|+|+.+  +...+.+.++++||.+.||.          |||++. ++++++
T Consensus       277 ~~~~~~~~~L~-~~g----~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~~i~  350 (357)
T TIGR03539       277 ARRAQLKPALE-KAG----FRIDHSEAGLYLWATRGEDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTA-TDERIA  350 (357)
T ss_pred             HHHHHHHHHHH-HcC----CCCcCCCccEEEEEECCCCHHHHHHHHHhCCEEECCccccCCCCCCeEEEEecC-CHHHHH
Confidence            99999999998 776    5677889999999865  33334444556799999961          999998 788888


Q ss_pred             HHHHHH
Q 012238          454 YLADAI  459 (467)
Q Consensus       454 ~~~~~l  459 (467)
                      +++++|
T Consensus       351 ~~~~~l  356 (357)
T TIGR03539       351 AAVARL  356 (357)
T ss_pred             HHHHhh
Confidence            888776

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK06836 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.9e-41  Score=341.23  Aligned_cols=340  Identities=19%  Similarity=0.225  Sum_probs=268.7

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      ++++||+.|.|    ..++ ++.+.+++.+.....  ....|.+..|.+++|+++++++...++..+++++|++  |+|+
T Consensus        33 ~~~~~l~~g~p----~~~~-~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~--t~G~  105 (394)
T PRK06836         33 DNVFDFSLGNP----SVPP-PAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVM--TCGA  105 (394)
T ss_pred             CCeEEecCcCC----CCCC-CHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEE--eCCh
Confidence            46899999976    4443 788888888776432  2367988999999999999999877777888999999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      ++++.++  +...+.+||.|++++|+|..|..+++..|++++.++++ ++++++|++.+++.++   ++++++++++|||
T Consensus       106 ~~al~~~--~~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~-~~~~~~d~~~l~~~~~---~~~~~v~~~~p~N  179 (394)
T PRK06836        106 AGALNVA--LKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTD-TDTFQPDLDALEAAIT---PKTKAVIINSPNN  179 (394)
T ss_pred             HHHHHHH--HHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecC-CccCcCCHHHHHhhcC---cCceEEEEeCCCC
Confidence            9999987  34446799999999999999999999999999999985 3457899999999996   5678888999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHh------cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccc
Q 012238          241 PTGIDPTPEQWEKIADVIQE------KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~------~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG  314 (467)
                      |||.+++.+++++|+++|++      ||++||+||+|.++.+++.  ....   +....+++++++||||.|++||+|+|
T Consensus       180 PtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~--~~~~---~~~~~~~~i~~~S~SK~~~~pGlRiG  254 (394)
T PRK06836        180 PTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGA--EVPY---IFKYYDNSIVVYSFSKSLSLPGERIG  254 (394)
T ss_pred             CCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCC--CCCC---hHHccCcEEEEecchhhccCcceeeE
Confidence            99999999999999999999      8999999999999987531  1111   12334689999999999999999999


Q ss_pred             eEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC-ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          315 AMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP-MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  393 (467)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~  393 (467)
                      |++   .+++..+.      ..+...+....+. ...+++.+.|.++..++.+..           .++.++++|+.+.+
T Consensus       255 ~~~---~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----------~~~~~~~~r~~l~~  314 (394)
T PRK06836        255 YIA---VNPEMEDA------DDLVAALVFANRILGFVNAPALMQRVVAKCLDATV-----------DVSIYKRNRDLLYD  314 (394)
T ss_pred             EEe---cCHHHhhh------HHHHHHHHHHhhccccccCCHHHHHHHHHHhCChH-----------HHHHHHHHHHHHHH
Confidence            996   55554321      0012222222222 134677788999888887641           24567888999999


Q ss_pred             HhhhccCCCCCcccccCCcceEEecCC---CHHHHHHHHHcccEEEeCC------C--eEEeccCChhhHHHHHHHHHHH
Q 012238          394 SLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       394 ~l~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~g------g--Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                      .|+ +.|    +.+..+++|+|+|+.+   +...+.+.++++||.+.||      |  ||+++. +++++++++++|+++
T Consensus       315 ~L~-~~g----~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~~-~~~~~~~~i~~l~~~  388 (394)
T PRK06836        315 GLT-ELG----FECVKPQGAFYLFPKSPEEDDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYCV-DTETIERSLPAFEKL  388 (394)
T ss_pred             HHH-hCC----CEeecCCceEEEEEeCCCCCHHHHHHHHHhCCEEEECchhcCCCCeEEEEecC-CHHHHHHHHHHHHHH
Confidence            998 776    5778889999999854   3333334455679999998      2  999985 899999999999999


Q ss_pred             HHhc
Q 012238          463 YHNV  466 (467)
Q Consensus       463 l~~~  466 (467)
                      ++++
T Consensus       389 l~~~  392 (394)
T PRK06836        389 AKEY  392 (394)
T ss_pred             HHHh
Confidence            8764

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=2.7e-41  Score=335.18  Aligned_cols=335  Identities=17%  Similarity=0.174  Sum_probs=258.3

Q ss_pred             ccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc
Q 012238           70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE  149 (467)
Q Consensus        70 i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~  149 (467)
                      +.++.++... ..++++||+.|.+    ..++ ++.+.+++.+.+..  ...| |..+.++||+++|+++.      +++
T Consensus         7 ~~~~~~~~~~-~~~~~~~l~~~~~----~~~~-p~~~~~a~~~~~~~--~~~Y-~~~~~~~lr~~ia~~~~------~~~   71 (354)
T PRK06358          7 INEIAREKGL-TKNMILDFSANIN----PLGV-PESLKQAITENLDK--LVEY-PDPDYLELRKRIASFEQ------LDL   71 (354)
T ss_pred             HHHHHHHhCC-CccceEEecCCCC----CCCC-CHHHHHHHHHHHHh--hhcC-CCccHHHHHHHHHHHhC------CCh
Confidence            3344444432 2235899999876    3333 67888888887643  3668 55678999999999973      358


Q ss_pred             CceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCC
Q 012238          150 QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (467)
Q Consensus       150 ~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (467)
                      ++|++  |+|+++++.++.   ..+.+ ++|++++|+|+.|...++..|++++.++++++.++.+| +.+++.+.   .+
T Consensus        72 ~~i~i--t~Ga~~~l~~~~---~~~~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~---~~  141 (354)
T PRK06358         72 ENVIL--GNGATELIFNIV---KVTKP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIK---EE  141 (354)
T ss_pred             hhEEE--CCCHHHHHHHHH---HHhCC-CcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhc---cC
Confidence            99999  999999999973   33444 68999999999999999999999999998655567888 66666664   45


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC
Q 012238          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (467)
                      ++++++++||||||.+++.+++++|+++|+++|++||+||+|.+|.+++   ...+.....+..+++|+++||||.||+|
T Consensus       142 ~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~---~~~~~~~~~~~~~~vi~~~S~SK~~gl~  218 (354)
T PRK06358        142 IDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEEN---ETISMINYLENFKNLIIIRAFTKFFAIP  218 (354)
T ss_pred             CCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCc---cchhHHHhccCCCCEEEEEechhhccCc
Confidence            6788889999999999999999999999999999999999999998753   1122222334457999999999999999


Q ss_pred             CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012238          310 AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ  389 (467)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~  389 (467)
                      |+|+||++  ++++.+++.            +.....  ..+++.+.|.++..+|++.       +++++.++.++++|+
T Consensus       219 G~RiG~lv--~~~~~~~~~------------~~~~~~--~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~  275 (354)
T PRK06358        219 GLRLGYGL--TSNKNLAEK------------LLQMRE--PWSINTFADLAGQTLLDDK-------EYIKKTIQWIKEEKD  275 (354)
T ss_pred             chhheeee--cCCHHHHHH------------HHHhCC--CCcchHHHHHHHHHHhccH-------HHHHHHHHHHHHHHH
Confidence            99999995  446777776            555443  3456788899998888754       235678888899999


Q ss_pred             HHHHHhhhccCCCCCcccccCCcceEEecCC--CHHHHHHHHHcccEEEeCCC----------eEEeccCChhhHHHHHH
Q 012238          390 KLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--NKAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLAD  457 (467)
Q Consensus       390 ~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~i~~~~~  457 (467)
                      .+.+.|+ +++  + +.+.+++|+ |+|+.+  ..++.+++++ +||.+.+|.          ||+++.  +++.+++++
T Consensus       276 ~l~~~L~-~~~--~-~~~~~~~g~-f~~~~~~~~~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRls~~~--~~~~~~l~~  347 (354)
T PRK06358        276 FLYNGLS-EFK--G-IKVYKPSVN-FIFFKLEKPIDLRKELLK-KGILIRSCSNYRGLDENYYRVAVKS--REDNKKLLK  347 (354)
T ss_pred             HHHHHHh-cCC--C-cEEcCCcce-EEEEEcCchHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEeCC--HHHHHHHHH
Confidence            9999998 762  2 566777665 788876  3455666665 699999971          999885  689999999


Q ss_pred             HHHHHH
Q 012238          458 AIIDSY  463 (467)
Q Consensus       458 ~l~~~l  463 (467)
                      +|++++
T Consensus       348 ~l~~~~  353 (354)
T PRK06358        348 ALEVIL  353 (354)
T ss_pred             HHHHHh
Confidence            998765

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.4e-41  Score=336.46  Aligned_cols=330  Identities=18%  Similarity=0.204  Sum_probs=255.5

Q ss_pred             ccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc
Q 012238           70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE  149 (467)
Q Consensus        70 i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~  149 (467)
                      +.+.+..+.. .+.++|+|++|++    .+++ ++.+.+++.+.+..  ...| |..|.++||+++|+++.      +++
T Consensus        18 ~~~~~~~~~~-~~~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~--~~~Y-~~~~~~~lr~~ia~~~~------~~~   82 (357)
T PRK14809         18 IEEVARELGL-DPDDLVKLSSNEN----PHGP-SPAAVEAIREAAER--VHSY-PKASHADLTAALADRWD------VSP   82 (357)
T ss_pred             HHHHHHHhCC-CccceeEecCCCC----CCCC-CHHHHHHHHHHHhh--hhcC-CCCCHHHHHHHHHHHhC------CCc
Confidence            3344444432 2357999999987    4444 66778888777643  3678 45789999999999973      348


Q ss_pred             CceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCC
Q 012238          150 QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (467)
Q Consensus       150 ~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (467)
                      ++|++  |+|++++++++  +...+.|||.|++++|+|..|...++..|+.++.++++.++++.+|.+.+++...    +
T Consensus        83 ~~I~i--t~G~~~al~~~--~~~~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~----~  154 (357)
T PRK14809         83 EQVWL--ANGGDGALDYL--ARAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAYD----G  154 (357)
T ss_pred             ceEEE--CCCHHHHHHHH--HHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc----C
Confidence            89999  99999999997  3444679999999999999999989999999999998654567778877766542    4


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC
Q 012238          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (467)
                      ++++++++||||||.+++.+++++|+++|++ +++||+||+|.++.++.     ..+ ...+..+++++++||||.|++|
T Consensus       155 ~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~-----~~~-~~~~~~~~vi~~~SfSK~~~~~  227 (357)
T PRK14809        155 ERIVYLTSPHNPTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERP-----SAV-ALVEERDDVAVLRTFSKAYGLA  227 (357)
T ss_pred             CcEEEEeCCCCCCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCc-----hhH-HHHhhCCCEEEEecchhHhcCc
Confidence            5688889999999999999999999999875 78999999999987531     122 2234557899999999999999


Q ss_pred             CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012238          310 AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ  389 (467)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~  389 (467)
                      |+|+||++   +++++++.            +.+...  ..+++.++|.++..+|.+.       +++++.++.++++|+
T Consensus       228 GlRiG~~~---~~~~~~~~------------~~~~~~--~~~~~~~~~~~a~~~l~~~-------~~~~~~~~~~~~~r~  283 (357)
T PRK14809        228 GLRLGYAV---VPEEWADA------------YARVNT--PFAASELACRAGLAALDDD-------EHVERTVETARWARE  283 (357)
T ss_pred             chhheeee---cCHHHHHH------------HHHhCC--CCCCCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHH
Confidence            99999996   78888887            555443  3456778888888888753       235677788888999


Q ss_pred             HHHHHhhhccCCCCCcccccCCcceEEecCC-C-HHHHHHHHHcccEEEeCCC--------eEEeccCChhhHHHHHHHH
Q 012238          390 KLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-N-KAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAI  459 (467)
Q Consensus       390 ~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-~-~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~~~i~~~~~~l  459 (467)
                      .+.+.|. ...        .+.+|+|+|+.+ + .++.+. ++++||.+.+|.        ||+++.  ++++++++++|
T Consensus       284 ~l~~~L~-~~~--------~~~~g~f~~~~~~~~~~~~~~-l~~~gv~v~~g~~f~~~~~iRls~~~--~~~~~~~l~~L  351 (357)
T PRK14809        284 YIREELD-APT--------WESAGNFVLAEVGDASAVAEA-AQERGVIVRDCTSFGLPECIRITCGT--REETERAVEVL  351 (357)
T ss_pred             HHHHHhc-Ccc--------CCCCCCEEEEECCCHHHHHHH-HHHCCEEEEECccCCCCCeEEEecCC--HHHHHHHHHHH
Confidence            9999887 432        146788999876 3 344555 556799999982        999874  68999999999


Q ss_pred             HHHHHh
Q 012238          460 IDSYHN  465 (467)
Q Consensus       460 ~~~l~~  465 (467)
                      ++++++
T Consensus       352 ~~~l~~  357 (357)
T PRK14809        352 NEVLAD  357 (357)
T ss_pred             HHHhcC
Confidence            998753

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.1e-41  Score=338.15  Aligned_cols=329  Identities=16%  Similarity=0.159  Sum_probs=259.7

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhc--CCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER--GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~--~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      ..|+|+.|++    .+++ ++.+++++.+.+..  .....| |..|.++||+++|+++...+|..+++++|++  |+|++
T Consensus        27 ~~i~l~~~~~----~~~~-~~~~~~al~~~l~~~~~~~~~Y-~~~g~~~lr~aia~~~~~~~~~~~~~~~I~i--t~G~~   98 (368)
T PRK03317         27 VPVRLNTNEN----PYPP-SPALVADIAEAVAEAAAGLNRY-PDRDAVALRADLAAYLTAQTGVGLTVENVWA--ANGSN   98 (368)
T ss_pred             ceeEecCCCC----CCCC-CHHHHHHHHHHHhhhhhhhccC-CCCchHHHHHHHHHHhhhhccCCCChhhEEE--CCCHH
Confidence            5699999987    5554 78889988887642  123567 5679999999999999888888888999999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      +++.++  +...+.+||.|+++.|+|..|...++..|.+++.++.  ++++++|++.+++.+++  .+++++++++||||
T Consensus        99 ~~l~~~--~~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~~~~--~~~~~i~l~~p~NP  172 (368)
T PRK03317         99 EILQQL--LQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPR--AADFTLDVDAAVAAIAE--HRPDVVFLTSPNNP  172 (368)
T ss_pred             HHHHHH--HHHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEccc--CCCCCCCHHHHHHHHhc--cCCCEEEEeCCCCC
Confidence            999997  4445679999999999999999999999999888876  34678999999999874  35567888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|++.|   +++||+||+|.+|.+++   .. +...+.+..+++++++||||.||++|+|+||++   +
T Consensus       173 tG~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~---~~-~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~---~  242 (368)
T PRK03317        173 TGTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSG---TP-SALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLA---A  242 (368)
T ss_pred             CCCCCCHHHHHHHHHHC---CceEEEeCCchhhcccC---Cc-CHHHHHHhCCCEEEEEechhhhccchhhhhhhh---C
Confidence            99999999999997766   79999999999987642   11 122333444689999999999999999999995   7


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +.....  ..+++.+.|.++..+|++..       .+.+.+++++++|+.+.+.|+ ..| 
T Consensus       243 ~~~~~~~------------l~~~~~--~~~~s~~~~~a~~~~l~~~~-------~~~~~~~~~~~~~~~l~~~L~-~~g-  299 (368)
T PRK03317        243 APAVVDA------------LRLVRL--PYHLSAVTQAAARAALRHAD-------ELLASVAALRAERDRVVAWLR-ELG-  299 (368)
T ss_pred             CHHHHHH------------HHhcCC--CCCCCHHHHHHHHHHhhCHH-------HHHHHHHHHHHHHHHHHHHHH-HCC-
Confidence            8888887            554443  33577888888888887531       123445667888999999998 776 


Q ss_pred             CCCcccccCCcceEEecCC-CHHHHHHHHHcccEEEeCCC-----eEEeccCChhhHHHHHHHHHHHHH
Q 012238          402 GKDWSFILRQIGMFSFTGL-NKAQSDNMTNKWHVYMTKDG-----RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l-~~~~~~~ll~~~gI~v~~gg-----Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                         +.+..++++|++|..+ +.+.+.+.+.++||.+.+.|     ||+++  +.+++++++++|+++++
T Consensus       300 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~--~~~~~~~~~~~l~~~~~  363 (368)
T PRK03317        300 ---LRVAPSDANFVLFGRFADRHAVWQGLLDRGVLIRDVGIPGWLRVTIG--TPEENDAFLAALAEVLA  363 (368)
T ss_pred             ---CEeCCCCCcEEEEeccCCHHHHHHHHHHCCEEEEeCCCCCeEEEecC--CHHHHHHHHHHHHHHHH
Confidence               5677888998888654 33333444445799998864     99987  46789999999999875

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=100.00  E-value=5e-41  Score=340.99  Aligned_cols=345  Identities=16%  Similarity=0.104  Sum_probs=256.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC----CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeec
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~----~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (467)
                      ++++|+|+.|.|.   ..|++.+.+.+++.+.+...    ....|++..|.++||+++|+++...+|..+++++|++  |
T Consensus        29 ~~~~i~l~~g~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~i--t  103 (416)
T PRK09440         29 TPGAIMLGGGNPA---HIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIAL--T  103 (416)
T ss_pred             CCCceeccCCCCC---ccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEE--c
Confidence            3578999999881   23333467777777766432    2257999999999999999999877788889999999  9


Q ss_pred             CCchhHHHHHHHHHHHhC-----CCCEEEE-cCCCCcchHHHHhhCC----CCeEEeeeecC-CCCCCChhhHHHHHHcC
Q 012238          158 LSGTGSLRLAAALIERYF-----PGAKVLI-SSPTWGNHKNIFNDAR----VPWSEYRYYDP-KTVGLDFEGMIADIKAA  226 (467)
Q Consensus       158 ~ggt~al~l~~~~l~~~~-----~gd~Vlv-~~P~y~~~~~~~~~~G----~~~~~v~~~~~-~~~~~d~~~l~~~l~~~  226 (467)
                      +|+++++.++.+.  .+.     +||.|++ ++|+|+.|...++..|    ..+..+++.++ ..+++|++.++  +.  
T Consensus       104 ~Ga~~al~~~~~~--l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~--  177 (416)
T PRK09440        104 NGSQSAFFYLFNL--FAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--ID--  177 (416)
T ss_pred             cChHHHHHHHHHH--HhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cC--
Confidence            9999999997433  342     6899999 6999999988665433    22223333222 14679998886  22  


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc
Q 012238          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (467)
Q Consensus       227 ~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (467)
                       .+++++++++||||||.+++.+++++|+++|+++|++||+||+|..+... .  .....  .....+++|+++||||. 
T Consensus       178 -~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~-~--~~~~~--~~~~~~~vI~~~SfSK~-  250 (416)
T PRK09440        178 -EDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPG-I--IFSEA--TPLWNPNIILCMSLSKL-  250 (416)
T ss_pred             -CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCC-c--chhhc--CccccCCeEEEeccccc-
Confidence             56789999999999999999999999999999999999999999764321 0  00000  00114689999999996 


Q ss_pred             ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH-HHHHHHH
Q 012238          307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME-MMAGRIK  385 (467)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~-~~~~~~~  385 (467)
                      ++||+|+||++   +++++++.            +.........+++.+.|.++..+|.++++.    +++. ..++.|+
T Consensus       251 ~~pGlRiG~~i---~~~~l~~~------------~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~----~~~~~~~~~~~~  311 (416)
T PRK09440        251 GLPGVRCGIVI---ADEEIIEA------------LSNMNGIISLAPGRLGPAIAAEMIESGDLL----RLSETVIRPFYR  311 (416)
T ss_pred             CCCcceEEEEe---CCHHHHHH------------HHHHHHHhccCCCcHHHHHHHHHhccchHH----HHHHHHHHHHHH
Confidence            89999999996   78888887            555554445578889999999999887653    3333 3577788


Q ss_pred             HHHHHHHHHhhhcc-CCCCCcccccCCcceEEecCC-----CHHHHHHHHHcccEEEeCC---------------C--eE
Q 012238          386 NVRQKLFDSLSAKD-KSGKDWSFILRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD---------------G--RI  442 (467)
Q Consensus       386 ~~r~~l~~~l~~~~-g~~~~~~~~~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g---------------g--Ri  442 (467)
                      ++++.+.+.|. +. +. ..+.+..|+||+|+|+.+     +.+.+.+.++++||.+.||               +  ||
T Consensus       312 ~r~~~~~~~L~-~~l~~-~~~~~~~p~gg~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRi  389 (416)
T PRK09440        312 QKVQLAIALLR-RYLPD-EPCLIHKPEGAIFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRM  389 (416)
T ss_pred             HHHHHHHHHHH-Hhccc-CCeEEecCCCceEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEE
Confidence            88888888887 43 10 124566889999999854     3333333445679999874               1  99


Q ss_pred             EeccCChhhHHHHHHHHHHHHHhc
Q 012238          443 SLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       443 s~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ||+. +++++++++++|++++++.
T Consensus       390 s~~~-~~~~l~~~i~~l~~~~~~~  412 (416)
T PRK09440        390 NYVQ-DDEEIEKGIAILAEEVEKA  412 (416)
T ss_pred             EecC-CHHHHHHHHHHHHHHHHHH
Confidence            9987 7899999999999998753

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=1.7e-40  Score=329.93  Aligned_cols=338  Identities=14%  Similarity=0.141  Sum_probs=256.1

Q ss_pred             CCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCc
Q 012238           66 PPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNS  145 (467)
Q Consensus        66 ~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~  145 (467)
                      ++..+...+.+++. ...++|+|+.|++    ..++ ++.+++++.+.+..  ...| |..+.+++|+++|+++.     
T Consensus         4 ~~~~~~~~~~~~~~-~~~~~i~l~~~~~----~~~~-p~~~~~a~~~~~~~--~~~y-~~~~~~~lr~~ia~~~~-----   69 (356)
T PRK08056          4 HGGNIREAATVLGI-SPDQLLDFSANIN----PLGM-PVSLKRAIIDNLDC--AERY-PDVEYRHLHQALARHHQ-----   69 (356)
T ss_pred             CCccHHHHHHHhCC-ChhhEEEeccccC----CCCC-CHHHHHHHHHHHHh--cccC-cCccHHHHHHHHHHHhC-----
Confidence            34445455555543 2347899999987    5554 78888988876643  2467 44579999999999963     


Q ss_pred             ccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc
Q 012238          146 VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA  225 (467)
Q Consensus       146 ~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~  225 (467)
                       +++++|++  |+|+++++.++.   ..+.+|+ |++++|+|..|...++..|++++.+|+++++++.+| +.+++.+. 
T Consensus        70 -~~~~~i~i--t~Ga~~~l~~~~---~~l~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~-  140 (356)
T PRK08056         70 -VPASWILA--GNGETESIFAVV---SGLKPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALT-  140 (356)
T ss_pred             -cChhhEEE--CCCHHHHHHHHH---HHhCCCC-EEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhcc-
Confidence             34889999  999999999873   2346775 788899999999999999999999998655556666 34555554 


Q ss_pred             CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC
Q 012238          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (467)
Q Consensus       226 ~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (467)
                        ++++++++++||||||.+++.+++++|+++|+++|++||+||+|.+|.++.    ...+. .....+++++++||||.
T Consensus       141 --~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~----~~~~~-~~~~~~~~i~~~S~SK~  213 (356)
T PRK08056        141 --PDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDE----TGFIP-QLADNPHLWVLRSLTKF  213 (356)
T ss_pred             --CCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcc----hHHHH-HhccCCCEEEEEechhh
Confidence              567788899999999999999999999999999999999999999997642    11121 22345689999999999


Q ss_pred             cccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238          306 LGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  385 (467)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~  385 (467)
                      |+++|+|+||++  +.++++++.            +++...  ..+++.++|.++..+|++..+       +++++++++
T Consensus       214 ~~~~G~RiG~~v--~~~~~~~~~------------l~~~~~--~~~~~~~~~~~a~~~l~~~~~-------~~~~~~~~~  270 (356)
T PRK08056        214 YAIPGLRLGYLV--NSDDAAVAR------------MRRQQM--PWSINAFAALAGEVILQDRAY-------QQATWQWLA  270 (356)
T ss_pred             ccCcchhheeee--cCCHHHHHH------------HHHhCC--CCchhHHHHHHHHHHhCCHHH-------HHHHHHHHH
Confidence            999999999995  446666666            554332  345667788888888865432       467788899


Q ss_pred             HHHHHHHHHhhhccCCCCCcccccCCcceEEecCC--C-HHHHHHHHHcccEEEeCCC----------eEEeccCChhhH
Q 012238          386 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKC  452 (467)
Q Consensus       386 ~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~i  452 (467)
                      ++|+.+.+.|+ +++.   +.+.++ +|+|+|+.+  + .++++.+++ +||.+.+|.          ||+++.  +++.
T Consensus       271 ~~r~~l~~~L~-~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRis~~~--~~~~  342 (356)
T PRK08056        271 EEGARFYQALC-ALPL---LTVWPG-RANYLFLRCERPDIDLQRALLT-QRILIRSCANYPGLDSRYYRVAIRS--AAEN  342 (356)
T ss_pred             HHHHHHHHHHh-cCCC---cEEcCC-CCcEEEEEcCCChHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEEcC--HHHH
Confidence            99999999998 7631   455555 577888865  2 345666665 699998861          999984  6889


Q ss_pred             HHHHHHHHHHHH
Q 012238          453 EYLADAIIDSYH  464 (467)
Q Consensus       453 ~~~~~~l~~~l~  464 (467)
                      +.++++|+++++
T Consensus       343 ~~l~~~l~~~~~  354 (356)
T PRK08056        343 ERLLAALRNVLT  354 (356)
T ss_pred             HHHHHHHHHHHc
Confidence            999999988764

>PLN02672 methionine S-methyltransferase

Probab=100.00  E-value=9.9e-41  Score=358.49  Aligned_cols=344  Identities=11%  Similarity=0.085  Sum_probs=264.7

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc-CceeeeecCC
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLS  159 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~g  159 (467)
                      .++++|+|++|++    .+++ ++.+++++.+.+...   .|  ..|.+++|+++++++...+|...++ ++|++  ++|
T Consensus       695 ~g~~vI~LsinE~----d~pp-Pp~V~eAi~eal~~~---~~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIv--t~G  762 (1082)
T PLN02672        695 QESSLIHMDVDES----FLPV-PSAVKASIFESFVRQ---NI--SESETDPRPSILQFIKSNYGFPTDSCTEFVY--GDT  762 (1082)
T ss_pred             CCCCEEEEeCCCC----CCCC-CHHHHHHHHHHHhhc---CC--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEE--eCC
Confidence            3468999999988    5665 888999998876432   12  3456788999999998878887765 58888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +++++.++  +...+.|||.|+++.|+|+.|...++..|++++.+|+++++++.+|++.+++.+++  .++..+++++||
T Consensus       763 s~elL~ll--l~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~--~~~~~I~L~nPn  838 (1082)
T PLN02672        763 SLALFNKL--VLCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLET--VKKPWVYISGPT  838 (1082)
T ss_pred             HHHHHHHH--HHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhcc--CCCCEEEEECcC
Confidence            99999886  45557799999999999999999999999999999996556789999999999863  233467788997


Q ss_pred             -CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH---hc---CCeEEEEecCccCcccCCCc
Q 012238          240 -NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA---TR---GMELLVAQSYSKNLGLYAER  312 (467)
Q Consensus       240 -NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~---~~---~~~~i~~~S~SK~~~~~G~R  312 (467)
                       ||||.+++.+++++|+++|++||++||+||+|.++.|++.....+++....   +.   ..++++++||||.|+++|||
T Consensus       839 hNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLR  918 (1082)
T PLN02672        839 INPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHE  918 (1082)
T ss_pred             CCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHH
Confidence             999999999999999999999999999999999998853211111121111   11   23799999999999999999


Q ss_pred             cceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHH---hCChhhHHHHHHHHHHHHHHHHHHHH
Q 012238          313 IGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANV---VGNPALFDEWKAEMEMMAGRIKNVRQ  389 (467)
Q Consensus       313 iG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---L~~~~~~~~~~~~l~~~~~~~~~~r~  389 (467)
                      +||++  +.++++++.            +.....  ...+....|.++..+   +.+.  ...|.+++.+.++.++++|+
T Consensus       919 IGylI--ap~~eLi~~------------l~~~~~--~s~~~~~~q~Aaaaalall~~~--~~~~~~~l~e~r~~Lk~rRd  980 (1082)
T PLN02672        919 FGFLA--LNDSVLIDA------------FHSAPG--LSRPHSTLKYTIKKLLGLKNQK--SSDLLDGVAEQKKILKSRAE  980 (1082)
T ss_pred             heeEE--eCCHHHHHH------------HHHhhh--hcCCCcHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHHH
Confidence            99996  445667777            443322  112222233333332   2210  12356678899999999999


Q ss_pred             HHHHHhhhccCCCCCcccccCCcceEEecCC---------------------C-HHHHHHHHHcccEEEeCC---C----
Q 012238          390 KLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---------------------N-KAQSDNMTNKWHVYMTKD---G----  440 (467)
Q Consensus       390 ~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---------------------~-~~~~~~ll~~~gI~v~~g---g----  440 (467)
                      ++.+.|+ +.|    |.+.+|+||||+|+.+                     + .+++++++++.||.+.||   |    
T Consensus       981 ~L~e~L~-~~G----i~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~ 1055 (1082)
T PLN02672        981 RLKETLE-ACG----WDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGY 1055 (1082)
T ss_pred             HHHHHHH-HCC----CeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCe
Confidence            9999999 876    6788999999999842                     2 345778888889999997   2    


Q ss_pred             -eEEeccCChhhHHHHHHHHHHHHH
Q 012238          441 -RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       441 -Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                       ||+|+. +++++++++++|++..+
T Consensus      1056 ~RIsfa~-~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1056 CRFSFAL-EDSEFDRALKAIARFKE 1079 (1082)
T ss_pred             EEEEecC-CHHHHHHHHHHHHHHHH
Confidence             999998 88899999999998765

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.3e-40  Score=331.36  Aligned_cols=316  Identities=19%  Similarity=0.192  Sum_probs=247.8

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      ..++|+|+.|++    ..++ ++.+.+++....   ....| |..+.++||+++++++.      +++++|++  |+|++
T Consensus        51 ~~~~i~l~~n~~----p~~~-~~~v~~a~~~~~---~~~~Y-p~~~~~~lr~~ia~~~~------~~~~~I~~--t~Ga~  113 (380)
T PLN03026         51 PEDIVKLDANEN----PYGP-PPEVLEALGNMK---FPYVY-PDPESRRLRAALAEDSG------LESENILV--GCGAD  113 (380)
T ss_pred             ccceEEccCCCC----CCCC-CHHHHHHHHhhH---hhccC-CCCCHHHHHHHHHHHhC------cChhhEEE--cCCHH
Confidence            358999999986    4444 566888776531   12446 55678999999999974      34789999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      +++.++  +...+.+||+|++++|+|..|...++..|++++.++.+  +++++|++.+++.+..  .+++++++++||||
T Consensus       114 ~~i~~~--~~~~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~--~~~~~v~l~~P~NP  187 (380)
T PLN03026        114 ELIDLL--MRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRT--PDFSLDVPRIVEAVET--HKPKLLFLTSPNNP  187 (380)
T ss_pred             HHHHHH--HHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC--CCCCcCHHHHHHHHhc--cCCcEEEEeCCCCC
Confidence            999997  34446799999999999999999999999999999883  4578999999998842  56789999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|++.+    ++||+||+|.+|.+..   .  .. ...+..+++++++||||.||++|+|+||++   +
T Consensus       188 TG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~---~--~~-~~~~~~~~viv~~SfSK~~glaGlRiGy~~---~  254 (380)
T PLN03026        188 DGSIISDDDLLKILELP----ILVVLDEAYIEFSTQE---S--RM-KWVKKYDNLIVLRTFSKRAGLAGLRVGYGA---F  254 (380)
T ss_pred             CCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCc---c--hH-HHHHhCCCEEEEecchHhhcCccccceeee---c
Confidence            99999999999997643    8999999999987542   1  12 223456789999999999999999999995   7


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +.+...+  .+.+.++|.++..+|.+.+       ++++.++.++++|+++.+.|+ .++.
T Consensus       255 ~~~~i~~------------l~~~~~~--~~~~~~~q~aa~~aL~~~~-------~~~~~~~~~~~~r~~l~~~L~-~~~~  312 (380)
T PLN03026        255 PLSIIEY------------LWRAKQP--YNVSVAAEVAACAALSNPK-------YLEDVKNALVEERERLFGLLK-EVPF  312 (380)
T ss_pred             CHHHHHH------------HHHhcCC--CCCCHHHHHHHHHHhhCHH-------HHHHHHHHHHHHHHHHHHHHH-HCCC
Confidence            8888877            6655543  3577788889888887642       256778889999999999999 7752


Q ss_pred             CCCcccccCCcceEEecCCC-----HHHHHHHHHcccEEEeCC------C--eEEeccCChhhHHHHHHHHHHH
Q 012238          402 GKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g------g--Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                         +. ..+.+++|+|+.+.     .++.+.++ ++||.++++      +  |||++.  ++++++++++|+++
T Consensus       313 ---~~-~~p~~~~f~~~~~~~~~~~~~~~~~l~-~~gI~v~~~~~~~~~~~lRis~~~--~~~~~~l~~al~~~  379 (380)
T PLN03026        313 ---LE-PYPSDANFILCRVTSGRDAKKLKEDLA-KMGVMVRHYNSKELKGYIRVSVGK--PEHTDALMEALKQL  379 (380)
T ss_pred             ---Ce-ECCCCCeEEEEECCCCCCHHHHHHHHH-HCCeEEEECCCCCCCCEEEEecCC--HHHHHHHHHHHHHh
Confidence               23 35667889888552     34455666 579999886      2  999984  57888888888764

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=7.7e-41  Score=313.61  Aligned_cols=315  Identities=16%  Similarity=0.212  Sum_probs=268.6

Q ss_pred             CcCCCCcchHHHHHHHHHHHhCCCC--cccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-h
Q 012238          120 KEYLPIEGLAAFNKVTAELLFGADN--SVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-D  196 (467)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~--~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~-~  196 (467)
                      ..|.+..|++++|+++|+++....|  ..++|+++++  ++|+|.+.+.++.+  +..|||.-+||.|+|+++..-++ .
T Consensus       115 a~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv--~~G~T~ane~l~fc--LadpgdafLvPtPyY~gfdrdl~~r  190 (471)
T KOG0256|consen  115 AMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVV--TNGATSANETLMFC--LADPGDAFLVPTPYYPGFDRDLRWR  190 (471)
T ss_pred             hhcccccCchHHHHHHHHHHHHHhCCCCccCccceEE--ecccchhhHHHHHH--hcCCCceeeecCCCCCcccccceec
Confidence            4577889999999999999865433  5678999999  99999999997433  46699999999999999987776 6


Q ss_pred             CCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC
Q 012238          197 ARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (467)
Q Consensus       197 ~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~  273 (467)
                      .|+++++|.+...+++.++.+.+|++++++   ..+.+-++++||+||-|++++++++..+++++.++|+++|+||+|.+
T Consensus       191 Tgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~  270 (471)
T KOG0256|consen  191 TGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAG  270 (471)
T ss_pred             cCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcc
Confidence            899999999988889999999999999764   45778899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCChhHHHHHHh----cCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCcc
Q 012238          274 FASGSLDNDASSVRLFAT----RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMY  349 (467)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  349 (467)
                      .+|+..  ...++.....    ..+++.++.|+||.+|+||+|+|.++  +.+++++..            ..++..  +
T Consensus       271 sVF~~~--~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviY--S~ne~Vvsa------------A~kmss--f  332 (471)
T KOG0256|consen  271 SVFDKS--EFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIY--SNNEDVVSA------------ATKMSS--F  332 (471)
T ss_pred             cccCcc--CceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEE--ecChHHHHH------------HHHHhh--c
Confidence            999853  3334444433    23689999999999999999999998  778887776            544433  5


Q ss_pred             CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-------C-
Q 012238          350 SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-------N-  421 (467)
Q Consensus       350 ~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-------~-  421 (467)
                      ..++...|..++..|+|..+.+.|   +++..+|++.+..++.+.|+ ++|+    .+.+.++|+|+|+++       + 
T Consensus       333 ~~vSs~tQ~~la~LLSD~~f~~~y---l~en~~Rl~~rh~~~~~gLk-~lgI----~cl~s~AGlF~wvDlr~lL~s~tf  404 (471)
T KOG0256|consen  333 GLVSSQTQYLLASLLSDEEFTREY---LRENNKRLRIRHRYIVEGLK-ALGI----PCLKSNAGLFCWVDLRKLLTSLTF  404 (471)
T ss_pred             cCCcHHHHHHHHHHhchHHHHHHH---HHHHHHHHHHHHHHHHhhHH-hcCC----ceeecCCeeEEEEEhHHhcCcCCh
Confidence            678889999999999998776544   78999999999999999999 9995    788999999999975       1 


Q ss_pred             -H--HHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHHHH
Q 012238          422 -K--AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       422 -~--~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                       .  +++++++++-++.+.||        |  |++|+++.++.++-++++|+..+.
T Consensus       405 e~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~  460 (471)
T KOG0256|consen  405 EGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLD  460 (471)
T ss_pred             HHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence             2  45788888789999999        4  999999888888889999998875

>PRK09105 putative aminotransferase; Provisional

Probab=100.00  E-value=1.8e-40  Score=330.82  Aligned_cols=317  Identities=18%  Similarity=0.187  Sum_probs=250.2

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      ++.|+|+.|++    ..++ ++.+.+++.+.+..  ...|++ .+.++||+++++++.      +++++|++  |+|+++
T Consensus        43 ~~~i~l~~~~~----~~~~-~~~~~~a~~~~~~~--~~~Y~~-~~~~~Lr~aia~~~~------v~~e~I~i--t~Gs~~  106 (370)
T PRK09105         43 EGAVFLNANEC----PLGP-SPAARDAAARSAAL--SGRYDL-ELEDDLRTLFAAQEG------LPADHVMA--YAGSSE  106 (370)
T ss_pred             CCcEEecCCCC----CCCC-CHHHHHHHHHHHHH--hcCCCC-chHHHHHHHHHHHhC------cChhhEEE--cCChHH
Confidence            57899999987    5554 77888888877643  245854 459999999999863      34889999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      ++.++  +...+.+||+|++++|+|+.|...++..|++++.++++  .++.+|++.+++. .   +++++++++||||||
T Consensus       107 ai~~~--~~~l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~-~---~~~~~v~l~nP~NPT  178 (370)
T PRK09105        107 PLNYA--VLAFTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLR--ADGAHDVKAMLAA-D---PNAGLIYICNPNNPT  178 (370)
T ss_pred             HHHHH--HHHHcCCCCEEEEeCCChHHHHHHHHHcCCeEEEecCC--CCCCCCHHHHHhc-C---CCCCEEEEeCCCCCC
Confidence            99998  44456799999999999999999999999999999984  3577999998775 2   457788899999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (467)
                      |.+++.++++++++.++ +++++|+||+|.+|...     . +...+.+..+++++++||||.||++|+|+||++   ++
T Consensus       179 G~~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~-----~-s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v---~~  248 (370)
T PRK09105        179 GTVTPRADIEWLLANKP-AGSVLLVDEAYIHFSDA-----P-SVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAA---AR  248 (370)
T ss_pred             CcCcCHHHHHHHHHhCC-CCcEEEEECchHHhccC-----c-chHHHHhhCCCEEEEecccHhhcCCccceeeee---cC
Confidence            99999999999998754 59999999999877532     1 222344456799999999999999999999996   78


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238          323 SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  402 (467)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~  402 (467)
                      +++++.            +...   ...+++...|.++..+|.++.       ++++.+++++++|+.+.+.|+ ++|  
T Consensus       249 ~~~i~~------------l~~~---~~~~~~~~~~~aa~~~L~~~~-------~~~~~~~~~~~~r~~l~~~L~-~~g--  303 (370)
T PRK09105        249 PDLLAK------------LARF---GHNPLPVPAAAAGLASLRDPK-------LVPQRRAENAAVREDTIAWLK-KKG--  303 (370)
T ss_pred             HHHHHH------------HHhc---CCCCcCHHHHHHHHHHHhCHH-------HHHHHHHHHHHHHHHHHHHHH-HCC--
Confidence            888877            5544   234577778888888887642       356777889999999999999 776  


Q ss_pred             CCcccccCCcceEEecCC--CH-HHHHHHHHcccEEEeCC-----C--eEEeccCChhhHHHHHHHHHHHHH
Q 012238          403 KDWSFILRQIGMFSFTGL--NK-AQSDNMTNKWHVYMTKD-----G--RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       403 ~~~~~~~~~~g~f~~~~l--~~-~~~~~ll~~~gI~v~~g-----g--Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                        +.+.+++++||+ +++  +. ++.+.|++ +||.+..+     +  ||+++.  ++++++++++|+++++
T Consensus       304 --~~~~~~~~~f~~-~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~Ris~~~--~~~~~~l~~al~~~~~  369 (370)
T PRK09105        304 --YKCTPSQANCFM-VDVKRPAKAVADAMAK-QGVFIGRSWPIWPNWVRVTVGS--EEEMAAFRSAFAKVMR  369 (370)
T ss_pred             --CCcCCCCCcEEE-EeCCCCHHHHHHHHHH-CCcEEecCCCCCCCeEEEEcCC--HHHHHHHHHHHHHHhh
Confidence              567788888775 543  43 55667766 49998421     2  999985  6789999999988764

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-40  Score=330.91  Aligned_cols=319  Identities=16%  Similarity=0.171  Sum_probs=253.8

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      +++|+|+.|.+    ...+ ++.+.+++.+.+..   ..|.|..|.+++|+++|+++.      +++++|++  |+|+++
T Consensus        29 ~~~i~l~~n~~----~~~~-~~~v~~a~~~~~~~---~~~~p~~g~~~lr~~ia~~~~------~~~~~i~~--t~G~~~   92 (359)
T PRK03158         29 EKIVKLASNEN----PYGP-SPKVKEAIAAHLDE---LALYPDGYAPELRTKVAKHLG------VDEEQLLF--GAGLDE   92 (359)
T ss_pred             CceEEecCCCC----CCCC-CHHHHHHHHHHHHH---hhcCCCCcHHHHHHHHHHHhC------CCHHHEEE--CCCHHH
Confidence            37899999987    3433 67788888877643   456688899999999999973      23789999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      ++.++  +...+.+||+|++++|+|+.|...++..|++++.+|++   ++++|++.+++.++   ++++++++++|||||
T Consensus        93 ~l~~~--~~~~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~d~~~l~~~~~---~~~~~v~i~~p~NPt  164 (359)
T PRK03158         93 VIQMI--SRALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGHDLEAMLKAID---EQTKIVWICNPNNPT  164 (359)
T ss_pred             HHHHH--HHHHhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC---CCCcCHHHHHHhcC---CCCCEEEEeCCCCCC
Confidence            99987  33346799999999999999999999999999999984   46799999988876   467788889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (467)
                      |.+++.+++.++++.|+ +|++||+||+|.++.+++.  ....+ ...+..+++++++||||.||++|+|+||++   ++
T Consensus       165 G~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~--~~~~~-~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v---~~  237 (359)
T PRK03158        165 GTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAED--YPDTL-PLLEKYENLIVLRTFSKAYGLAALRVGYGI---AS  237 (359)
T ss_pred             CCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCcc--cccHH-HHHHhcCCEEEEEechHhhcCcchhhehhc---CC
Confidence            99999999999988774 6999999999999886531  11122 233455789999999999999999999995   78


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238          323 SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  402 (467)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~  402 (467)
                      +++++.            +......  .+++.++|.++..+|++..+       +++.++.++++++.+.+.|+ +.|  
T Consensus       238 ~~~~~~------------~~~~~~~--~~~~~~~q~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~l~-~~~--  293 (359)
T PRK03158        238 EELIEK------------LNIARPP--FNTTRIAQYAAIAALEDQAF-------LKECVEKNAEGLEQYYAFCK-EYG--  293 (359)
T ss_pred             HHHHHH------------HHHhcCC--CCCCHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHHH-HCC--
Confidence            888887            5555432  46788899999999976532       44666778888999999998 765  


Q ss_pred             CCcccccCCcceEEecCC--C-HHHHHHHHHcccEEEeCC---C-----eEEeccCChhhHHHHHHHHHHH
Q 012238          403 KDWSFILRQIGMFSFTGL--N-KAQSDNMTNKWHVYMTKD---G-----RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       403 ~~~~~~~~~~g~f~~~~l--~-~~~~~~ll~~~gI~v~~g---g-----Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                        +.+.++ +|+|+|+.+  + .++++.+++ +||.+.||   |     ||+++  +++++++++++|+++
T Consensus       294 --~~~~~~-~g~~i~~~~~~~~~~~~~~l~~-~gv~v~~g~~f~~~~~iRi~~~--~~~~~~~l~~al~~~  358 (359)
T PRK03158        294 --LFYYPS-QTNFIFVDTGRDANELFEALLK-KGYIVRSGAALGFPTGVRITIG--LKEQNDKIIELLKEL  358 (359)
T ss_pred             --CeeCCC-cCcEEEEECCCCHHHHHHHHHH-CCeEEeeCCCCCCCCeEEEecC--CHHHHHHHHHHHHHh
Confidence              455544 567999865  3 345666665 69999997   2     99998  468999999999875

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.7e-40  Score=330.39  Aligned_cols=324  Identities=18%  Similarity=0.196  Sum_probs=252.5

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      .+++|+|+.|.+    ...+ ++.+.+++.+....  ...|++..|. +||+++++++.-      ++++|++  |+|++
T Consensus        35 ~~~~i~l~~~~~----~~~~-~~~~~~al~~~~~~--~~~Y~~~~g~-~lr~~ia~~~~~------~~~~i~~--t~G~~   98 (371)
T PRK05166         35 VPRIAKLGSNEN----PLGP-SPAVRRAFADIAEL--LRLYPDPQGR-ALREAIAARTGV------PADRIIL--GNGSE   98 (371)
T ss_pred             CcceEEcCCCCC----CCCC-CHHHHHHHHHHHHH--hhcCCCCcHH-HHHHHHHHHhCc------CHHHEEE--cCCHH
Confidence            457999999987    3333 67788888775433  3679888884 899999999632      3789999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      +++.++  +...+.+||.|+++.|+|+.+...++..|++++.++++  .++++|++.+++.++   ++++++++++||||
T Consensus        99 ~~l~~~--~~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~~~---~~~~~v~l~~p~NP  171 (371)
T PRK05166         99 DLIAVI--CRAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVT--PDLGFDLDALCAAVA---RAPRMLMFSNPSNP  171 (371)
T ss_pred             HHHHHH--HHHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecC--CCCCCCHHHHHHhhh---cCCCEEEEeCCCCC
Confidence            999987  33346799999999999999999999999999999984  357899999999887   45678888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|+++|++ +++||+||+|.++.++..  .......+.+..+++|+++||||.||++|+|+||++  ++
T Consensus       172 tG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i--~~  246 (371)
T PRK05166        172 VGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGDD--YPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGL--VS  246 (371)
T ss_pred             CCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcC--cccHHHHHhhcCCCEEEEeechHhhhcchhheeeee--cC
Confidence            9999999999999999874 889999999999986421  111222222345689999999999999999999985  46


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +.+...  ..+++.+.|.++..+|.+.+       ++++.++.++++|+.+.+.|+ ..| 
T Consensus       247 ~~~l~~~------------~~~~~~--~~~~~~~~q~~~~~~l~~~~-------~~~~~~~~~~~~r~~l~~~L~-~~g-  303 (371)
T PRK05166        247 DPELVGL------------LDRVRT--PFNVNGAAQAAALAALDDEE-------HLAKGVALALAERERLKKELA-EMG-  303 (371)
T ss_pred             CHHHHHH------------HHHhcc--CCCCCHHHHHHHHHHhcCHH-------HHHHHHHHHHHHHHHHHHHHH-HCc-
Confidence            7887776            544433  34578888888888887542       256677888899999999999 776 


Q ss_pred             CCCcccccCCcceEEecCC--C-HHHHHHHHHcccEEEeCCC--------eEEeccCChhhHHHHHHHHHHHH
Q 012238          402 GKDWSFILRQIGMFSFTGL--N-KAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l--~-~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~~~i~~~~~~l~~~l  463 (467)
                         +.+ .+.+|+|+|+++  + .++.+.+++ +||.+.||.        ||+++.  .++.+++.++|++++
T Consensus       304 ---~~~-~p~~g~fl~~~~~~~~~~l~~~l~~-~gi~v~p~~~~~~~~~iRi~~~~--~~~~~~l~~~l~~i~  369 (371)
T PRK05166        304 ---YRI-APSRANFLFFDARRPASAVAEALLR-QGVIVKPWKQPGFETFIRVSIGS--PEENDHFVAALDKVL  369 (371)
T ss_pred             ---Cee-CCCcCCEEEEeCCCCHHHHHHHHHH-CCeEEecCCCCCCCCeEEEEcCC--HHHHHHHHHHHHHHh
Confidence               454 455678999865  3 345666665 599999872        999995  567888888887764

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=100.00  E-value=5.1e-40  Score=327.14  Aligned_cols=321  Identities=14%  Similarity=0.101  Sum_probs=242.5

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      .++|+|+.|++    ..++ ++.+.+++.+.+..  ...|++. +.++||+++|+++.      +++++|++  |+|+++
T Consensus        22 ~~~i~l~~~~n----~~~~-~~~~~~a~~~~~~~--~~~Y~~~-~~~~Lr~aia~~~~------v~~~~I~i--t~G~~~   85 (360)
T PRK07392         22 DAILDFSASIN----PLGP-PESVIAAIQSALSA--LRHYPDP-DYRELRLALAQHHQ------LPPEWILP--GNGAAE   85 (360)
T ss_pred             ccEEEeCCcCC----CCCC-CHHHHHHHHHHHHH--hhcCCCc-CHHHHHHHHHHHhC------cChhhEEE--CCCHHH
Confidence            37899999876    4554 77888888876653  3678654 57899999999972      45889999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCC---CCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTV---GLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~---~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      ++.++   +..+.+||+|++++|+|..|...++..|++++.++++++.++   ..|++.+++..    .++++++++|||
T Consensus        86 ~i~~~---~~~l~~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~nP~  158 (360)
T PRK07392         86 LLTWA---GRELAQLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL----TPNDGLLLNNPH  158 (360)
T ss_pred             HHHHH---HHHhCCCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc----cCCCEEEEeCCC
Confidence            99987   334568899999999999999999999999999998644333   24555554432    356789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||.+++.+++.++   ++++++ +|+||+|.+|.++..   ..+.....+..+++|+++||||.|++||+|+||++  
T Consensus       159 NPTG~~~~~~~l~~l---~~~~~~-~IiDE~y~~~~~~~~---~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v--  229 (360)
T PRK07392        159 NPTGKLWSREAILPL---LEQFAL-VVVDEAFMDFLPPDA---EQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAI--  229 (360)
T ss_pred             CCCCCCcCHHHHHHH---HHHCCE-EEEECchhhhccCcc---ccchHHHhhcCCCEEEEEechhhhcCCchheeeee--
Confidence            999999998866655   667775 666999999987531   11222233455789999999999999999999996  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                       +++++++.            +.....  ..+++.+.|.++..+|++..+       .+..++.++++|+.+.+.|+ .+
T Consensus       230 -~~~~~~~~------------~~~~~~--~~~~s~~~q~~~~~~l~~~~~-------~~~~~~~~~~~r~~l~~~L~-~~  286 (360)
T PRK07392        230 -AHPDRLQR------------WQQWRD--PWPVNGLAAAAAIAALADRDF-------QQQTWAWLPPAREALFQGLA-SL  286 (360)
T ss_pred             -CCHHHHHH------------HHhhCC--CCCCCHHHHHHHHHHhccHHH-------HHHHHHHHHHHHHHHHHHHH-hC
Confidence             67777776            554432  346788899999999987543       33455678889999999998 76


Q ss_pred             CCCCCcccccCCcceEEecCCC---HHHHHHHHHcccEEEeCCC----------eEEeccCChhhHHHHHHHHHHHHH
Q 012238          400 KSGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       400 g~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                      +  + +.+. +.+++|+|+++.   .++.+++++++||.+.||.          ||+++.  .++.+++.++|++++.
T Consensus       287 ~--~-~~~~-~~~~~fl~~~~~~~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~--~~~~~~l~~al~~~~~  358 (360)
T PRK07392        287 P--G-LTPL-PSAANFLLVQSQGSALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRT--EAENQRLLEALAAILA  358 (360)
T ss_pred             C--C-cEEC-CCCCCEEEEEcCCCHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCC--HHHHHHHHHHHHHHhh
Confidence            3  1 4544 477889998652   3456677777899999881          999986  3556777777777654

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.9e-40  Score=328.36  Aligned_cols=316  Identities=18%  Similarity=0.213  Sum_probs=247.1

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      .++|+|+.|++    .+++ ++.+.+++.+.+.... ..| |..|.++||+++|+++.      +++++|++  |+|+++
T Consensus        24 ~~~i~l~~~~~----~~~~-~~~~~~a~~~~~~~~~-~~y-~~~~~~~lr~aia~~~~------~~~~~I~i--t~G~~~   88 (353)
T PRK05387         24 AKLIKLNTNEN----PYPP-SPKVLEAIRAALGDDL-RLY-PDPNADALRQAIAAYYG------LDPEQVFV--GNGSDE   88 (353)
T ss_pred             cceeeccCCCC----CCCC-CHHHHHHHHHHhhhhh-hcC-CCCcHHHHHHHHHHHhC------CCHHHEEE--cCCHHH
Confidence            47899999987    4554 7788999888765433 678 45577999999999974      34889999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      ++.++  +...+.+||+|++++|+|+.|...++..|++++.++++  +++++|++.+++       .++++++++|||||
T Consensus        89 al~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~-------~~~~v~~~~P~NPt  157 (353)
T PRK05387         89 VLAHA--FLAFFNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLD--DDFSIDVEDYLR-------PNGGIIFPNPNAPT  157 (353)
T ss_pred             HHHHH--HHHhcCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecC--CCCCCCHHHHHh-------cCCEEEEeCCCCCC
Confidence            99998  44457799999999999999999999999999999984  357899998863       23467889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (467)
                      |.+++.+++++|++.++  ++++|+||+|.+|...    .  .. .+.+..+++++++||||.|+++|+|+||++   ++
T Consensus       158 G~~~~~~~~~~l~~~~~--~~~livDe~y~~~~~~----~--~~-~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~---~~  225 (353)
T PRK05387        158 GIALPLAEIERILAANP--DSVVVIDEAYVDFGGE----S--AI-PLIDRYPNLLVVQTFSKSRSLAGLRVGFAI---GH  225 (353)
T ss_pred             CCCCCHHHHHHHHHhCC--CcEEEEeCcccccCCc----c--hH-HHHhhCCCEEEEEehhHhhcchhhhceeee---cC
Confidence            99999999999987643  8999999999876421    1  11 233445789999999999999999999995   78


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhccCc-cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          323 SDLAARCCEVAVIQVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      +++++.            ++...... ..+++.+.|.++..+|.+.++       +++.+++++++|+.+.+.|+ ++| 
T Consensus       226 ~~~~~~------------l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-------~~~~~~~~~~~~~~l~~~L~-~~g-  284 (353)
T PRK05387        226 PELIEA------------LNRVKNSFNSYPLDRLAQAGAIAAIEDEAY-------FEETRAKVIATRERLVEELE-ALG-  284 (353)
T ss_pred             HHHHHH------------HHHhhccCCCCCcCHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHHH-HCC-
Confidence            888877            55544332 235677888888888875432       45677888999999999999 776 


Q ss_pred             CCCcccccCCcceEEecCC---CH-HHHHHHHHcccEEEeCCC--------eEEeccCChhhHHHHHHHHHHHHH
Q 012238          402 GKDWSFILRQIGMFSFTGL---NK-AQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l---~~-~~~~~ll~~~gI~v~~gg--------Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                         +.+. +.+++|+|+.+   +. ++.+.+. ++||.+...+        ||+++  +++++++++++|++++.
T Consensus       285 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~iRis~~--~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        285 ---FEVL-PSKANFVFARHPSHDAAELAAKLR-ERGIIVRHFNKPRIDQFLRITIG--TDEEMEALVDALKEILA  352 (353)
T ss_pred             ---CeEC-CCcCcEEEEECCCCCHHHHHHHHH-HCCEEEEECCCCCCCCeEEEEeC--CHHHHHHHHHHHHHHhh
Confidence               4544 45677888865   33 4455654 5699985541        99998  46899999999999875

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=3.5e-40  Score=327.99  Aligned_cols=320  Identities=18%  Similarity=0.145  Sum_probs=251.7

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      +++|+|+.|++    .+++ ++.+++++.+.+.......|.+ .|.++||+++|+++....     .++|++  |+|+++
T Consensus        26 ~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~~~~-----~~~I~~--t~G~~~   92 (356)
T PRK04870         26 TGMVKLDAMEN----PYRL-PAELRAELGERLAEVALNRYPD-PRAAALKAALRAAMGVPA-----GADVLL--GNGSDE   92 (356)
T ss_pred             CCceeCcCCCC----CCCC-CHHHHHHHHHHhhccccccCCC-CCHHHHHHHHHHHhCcCC-----CCcEEE--cCCHHH
Confidence            47999999987    5555 8889999988775433467855 788999999999974321     248888  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      ++.++  +...+.+||+|++++|+|..|...++..|++++.++++  +++++|++.+++.+..  .+++++++++|||||
T Consensus        93 ~i~~~--~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~--~~~~~d~~~l~~~~~~--~~~~~v~l~~p~NPt  166 (356)
T PRK04870         93 LIQLL--ALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT--ADFTLDLPAMLAAIAE--HRPALVFLAYPNNPT  166 (356)
T ss_pred             HHHHH--HHHhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHHHhhc--CCCCEEEEcCCCCCC
Confidence            99997  33346799999999999999999999999999999984  3578999999999864  467788889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (467)
                      |.+++.+++++|+++|   ++++|+||+|.+|.+..     + . ......+++++++|||| +++||+|+||++   ++
T Consensus       167 G~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~~-----~-~-~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i---~~  232 (356)
T PRK04870        167 GNLFDDADVERIIEAA---PGLVVVDEAYQPFAGDS-----W-L-PRLARFPNLLVMRTVSK-LGLAGLRLGYLA---GH  232 (356)
T ss_pred             CCCCCHHHHHHHHHHC---CCEEEEECCchhhcCcc-----h-H-HHHhhCCCEEEEecchh-hhhHHHhhhhhh---CC
Confidence            9999999999999988   77899999999886431     1 1 12244568999999999 899999999995   78


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238          323 SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  402 (467)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~  402 (467)
                      +++++.            +.....  ..+++.++|.++..++++.+       .+++.+++++++|+.+.+.|+ +++  
T Consensus       233 ~~~i~~------------~~~~~~--~~~~~~~~q~~a~~~l~~~~-------~~~~~~~~~~~~~~~l~~~L~-~~~--  288 (356)
T PRK04870        233 PAWIAE------------LDKVRP--PYNVNVLTQATALFALEHVD-------VLDAQAAQLRAERTRLAAALA-ALP--  288 (356)
T ss_pred             HHHHHH------------HHHccC--CCcCCHHHHHHHHHHHhCHH-------HHHHHHHHHHHHHHHHHHHHH-hCC--
Confidence            888777            555442  23577788888877776532       256777888899999999998 762  


Q ss_pred             CCcccccCCcceEEecCCC-HHHHHHHHHcccEEEeCCC----------eEEeccCChhhHHHHHHHHHHHH
Q 012238          403 KDWSFILRQIGMFSFTGLN-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       403 ~~~~~~~~~~g~f~~~~l~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~i~~~~~~l~~~l  463 (467)
                      + +.+. +.+|+|+|+.++ .+.+.+.++++||.+.++.          ||+++.  .+++++++++|++++
T Consensus       289 ~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~~--~~~~~~l~~al~~~~  356 (356)
T PRK04870        289 G-VTVF-PSAANFILVRVPDAAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVGT--PEENAQFLAALKAAL  356 (356)
T ss_pred             C-cEEC-CCCCeEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCCC--HHHHHHHHHHHHHhC
Confidence            2 4544 456678888763 4444555667899998861          999985  688999999998763

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=100.00  E-value=5.6e-40  Score=321.32  Aligned_cols=319  Identities=19%  Similarity=0.246  Sum_probs=261.0

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (467)
                      ++++|+..++    ..++ ++.+++++.+.+..  .+.| |.....++++++++++..     .++++|++  ++|+++.
T Consensus        23 ~~i~LssNen----P~gp-~~~~~~~~~~~~~~--~~rY-Pd~~~~~l~~a~a~~~~~-----~~~~~V~~--gnGsde~   87 (356)
T COG0079          23 GIIKLSSNEN----PYGP-PPKVIEAIRAALDK--LNRY-PDPDYRELRAALAEYYGV-----VDPENVLV--GNGSDEL   87 (356)
T ss_pred             cceeecCCCC----CCCC-CHHHHHHHHHHHHh--hccC-CCCcHHHHHHHHHHHhCC-----CCcceEEE--cCChHHH
Confidence            6899998765    5554 68888888887653  3678 666899999999999753     23789998  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCC
Q 012238          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG  243 (467)
Q Consensus       164 l~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG  243 (467)
                      +.++  +...+.+||+|+++.|+|..|...++..|++++.++..+   +.+|++.+.+.+.   ++++++++||||||||
T Consensus        88 i~~l--~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~---~~~d~~~~~~~~~---~~~~lv~i~nPNNPTG  159 (356)
T COG0079          88 IELL--VRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE---FRLDLDAILAAIR---DKTKLVFLCNPNNPTG  159 (356)
T ss_pred             HHHH--HHHhhcCCCEEEEcCCChHHHHHHHHhcCCeEEEecccc---cccCHHHHHHhhh---cCCCEEEEeCCCCCCC
Confidence            9998  444577999999999999999999999999999999843   8899999999998   4678999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCH
Q 012238          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (467)
Q Consensus       244 ~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~  323 (467)
                      ..++.++++++++.+.+ +.+||+||+|.+|...      ..+ .+....+++++++||||.||++|+|+||++   +++
T Consensus       160 ~~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~~------~~~-~l~~~~~nlivlRTfSKa~gLAGlRlGy~i---a~~  228 (356)
T COG0079         160 TLLPREELRALLEALPE-GGLVVIDEAYIEFSPE------SSL-ELLKYPPNLIVLRTFSKAFGLAGLRVGYAI---ANP  228 (356)
T ss_pred             CCCCHHHHHHHHHhCCC-CcEEEEeCchhhcCCc------hhh-hhccCCCCEEEEEecHHhhhcchhceeecc---CCH
Confidence            99999999999999988 9999999999999851      122 233355679999999999999999999985   999


Q ss_pred             HHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 012238          324 DLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK  403 (467)
Q Consensus       324 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~  403 (467)
                      ++++.            +.+...++  +.+.+++.++..+|.+.       +++++.++++++.|+++.+.|+ .+|+  
T Consensus       229 ~~i~~------------l~~vr~p~--~v~~~a~~aa~aal~~~-------~~~~~~~~~~~~~r~rl~~~l~-~~~~--  284 (356)
T COG0079         229 ELIAA------------LNKVRPPF--NVSSPALAAAIAALRDA-------DYLEESVERIREERERLYAALK-ALGL--  284 (356)
T ss_pred             HHHHH------------HHHhcCCC--CCCHHHHHHHHHHcccH-------HHHHHHHHHHHHHHHHHHHHHH-hCCC--
Confidence            99998            87777653  56777888888888876       3377899999999999999999 8763  


Q ss_pred             CcccccCCcceEEecCCC---H-HHHHHHHHcccEEEeCCC---------eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          404 DWSFILRQIGMFSFTGLN---K-AQSDNMTNKWHVYMTKDG---------RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       404 ~~~~~~~~~g~f~~~~l~---~-~~~~~ll~~~gI~v~~gg---------Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                       ..+.+++ +.|+++...   . ++.+.|++ +||.++.++         ||++++  +++.++++++|.++++.
T Consensus       285 -~~v~pS~-aNFvlv~~~~~~~~~l~~~L~~-~giivR~~~~~~~~~~~lRitvgt--~een~~ll~AL~~~~~~  354 (356)
T COG0079         285 -FGVFPSQ-ANFVLVRVPDAEAAALAEALLK-KGILVRDCSSVGLLPGYLRITVGT--PEENDRLLAALREVLKG  354 (356)
T ss_pred             -CeecCCC-CcEEEEECCCccHHHHHHHHHH-CCEEEEeCCCCCCCCCeEEEEeCC--HHHHHHHHHHHHHHHhc
Confidence             2255555 557777653   2 34555555 599998871         999985  56779999999998865

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=7.3e-40  Score=326.76  Aligned_cols=322  Identities=13%  Similarity=0.121  Sum_probs=253.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      ....|+|+.|++    +.++ ++.+.+++.+....  ...|++. +.++||+++|+++.      +++++|++  |+|++
T Consensus        31 ~~~~~~l~~~~~----~~~~-~~~~~~a~~~~~~~--~~~Y~~~-~~~~Lr~~ia~~~~------~~~~~I~i--t~G~~   94 (369)
T PRK08153         31 RPFRARIGANES----GFGP-SPSVIAAMREAAAE--IWKYGDP-ENHDLRHALAAHHG------VAPENIMV--GEGID   94 (369)
T ss_pred             CcceeEecCCCC----CCCC-CHHHHHHHHHHHHH--hhcCCCC-ccHHHHHHHHHHhC------CCHHHEEE--cCCHH
Confidence            335679999987    6665 77888888776542  2568655 58999999999973      34789999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      +++.++  +...+.|||.|++++|+|+.|...++..|++++.+|+++   .++|++.+++.+..  .+++++++++||||
T Consensus        95 ~~l~~~--~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~---~~~~~~~l~~~~~~--~~~~~i~l~~P~NP  167 (369)
T PRK08153         95 GLLGLI--VRLYVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRD---DREDLDALLDAARR--ENAPLVYLANPDNP  167 (369)
T ss_pred             HHHHHH--HHHhcCCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCC---CCCCHHHHHHHhcc--cCCcEEEEeCCCCC
Confidence            999997  333467999999999999999999999999999999842   25899988877653  46678888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|++.|+ +|++||+||+|.++.+++   ...   .+....+++++++||||.||+||+|+||++   +
T Consensus       168 tG~~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~---~~~---~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v---~  237 (369)
T PRK08153        168 MGSWHPAADIVAFIEALP-ETTLLVLDEAYCETAPAG---AAP---PIDTDDPNVIRMRTFSKAYGLAGARVGYAI---G  237 (369)
T ss_pred             CCCCCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCcc---cch---hhhhcCCCEEEEecchHhccCcchheeeee---c
Confidence            999999999999999887 499999999999988642   111   222335689999999999999999999996   7


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +.+....  .+++.+.|.++..+|.++.       .+++.++.++++|+.+.+.|+ +.| 
T Consensus       238 ~~~~~~~------------l~~~~~~--~~~s~~~q~~~~~~l~~~~-------~~~~~~~~~~~~r~~~~~~L~-~~g-  294 (369)
T PRK08153        238 APGTIKA------------FDKVRNH--FGMNRIAQAAALAALKDQA-------YLAEVVGKIAAARDRIAAIAR-ANG-  294 (369)
T ss_pred             CHHHHHH------------HHHhhcC--CCCCHHHHHHHHHHhcCHH-------HHHHHHHHHHHHHHHHHHHHH-HCC-
Confidence            8888887            5555443  3578889999999997542       255678888999999999998 876 


Q ss_pred             CCCcccccCCcceEEecCCC------HHHHHHHHHcccEEEe-CC-----C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          402 GKDWSFILRQIGMFSFTGLN------KAQSDNMTNKWHVYMT-KD-----G--RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l~------~~~~~~ll~~~gI~v~-~g-----g--Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                         +... |.+++|+|+++.      .++.+++++ +||.+. |+     +  ||+++  +++++++++++|++++..+
T Consensus       295 ---~~~~-p~~~~f~~~~~~~~~~~a~~l~~~l~~-~Gi~v~~p~~~~~~~~iRis~~--~~~~~~~~~~al~~~~~~~  366 (369)
T PRK08153        295 ---LTPL-PSATNFVAIDCGRDGAFARAVLDGLIA-RDIFVRMPGVAPLDRCIRVSCG--PDEELDLFAEALPEALEAA  366 (369)
T ss_pred             ---CccC-CCcCcEEEEECCCCcccHHHHHHHHHH-CCeEEeeCCCCCCCCeEEEecC--CHHHHHHHHHHHHHHHHHh
Confidence               3433 567889998652      233445554 699995 43     2  99998  4789999999999998654

>PRK06225 aspartate aminotransferase; Provisional

Probab=100.00  E-value=8e-39  Score=320.98  Aligned_cols=332  Identities=15%  Similarity=0.182  Sum_probs=257.1

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      .+.|+|+.|.+    ..++ ++.+.+++.+.+.......|.+..|.+++|+++++++..      ++++|++  |+|+++
T Consensus        28 ~~~i~l~~~~~----~~~~-~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~------~~~~v~~--~~g~t~   94 (380)
T PRK06225         28 KEMIWMGQNTN----HLGP-HEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLGL------DDDEALI--TAGATE   94 (380)
T ss_pred             CCeEEccCCCC----CCCC-CHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhcCC------CCCcEEE--eCCHHH
Confidence            47999999876    4444 788999998888654446788888999999999999742      3779999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeec-CCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      +++++  +...+.+||+|++++|+|..+...++..|++++.+++++ +.++.+|++.+++.+.   ++++++++++||||
T Consensus        95 al~~~--~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~p~Np  169 (380)
T PRK06225         95 SLYLV--MRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMD---ENTRLIYLIDPLNP  169 (380)
T ss_pred             HHHHH--HHHhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcC---CCceEEEEeCCCCC
Confidence            99998  333467999999999999999999999999999998743 3357899999999886   56778888899999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|+++|+++|+++|+||+|.+|..+.    . ....+  ..++++++.||||.+|++|+|+||++   .
T Consensus       170 tG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~----~-~~~~~--~~~~~i~~~s~SK~~g~~G~RiG~i~---~  239 (380)
T PRK06225        170 LGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREH----T-LAAEY--APEHTVTSYSFSKIFGMAGLRIGAVV---A  239 (380)
T ss_pred             CCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccC----C-chhhc--CCCCEEEEeechhhcCCccceeEEEe---c
Confidence            9999999999999999999999999999998876432    1 11111  23678999999999999999999996   6


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-C
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-K  400 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~-g  400 (467)
                      ++++++.            +...... ..+.+.++|.++...|...      .++++..++.++++++.+.+.|+ ++ +
T Consensus       240 ~~~l~~~------------~~~~~~~-~~~~~~~~~~~a~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~~  299 (380)
T PRK06225        240 TPDLIEV------------VKSIVIN-DLGTNVIAQEAAIAGLKVK------DEWIDRIRRTTFKNQKLIKEAVD-EIEG  299 (380)
T ss_pred             CHHHHHH------------HHHHHhc-ccCCCHHHHHHHHHHHhcc------hHHHHHHHHHHHHHHHHHHHHHH-hCcC
Confidence            7888777            4443322 3456777888877777542      12245666777777888888888 64 3


Q ss_pred             CCCCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCC-------C----eEEeccCChhhHHHHHHHHHHHH
Q 012238          401 SGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD-------G----RISLAGLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       401 ~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g-------g----Ris~~~~~~~~i~~~~~~l~~~l  463 (467)
                      .  .+.. .+.+|+|+|+.+     +. ++.+++. ++||.+.+|       |    |++++. +++++++++++|++++
T Consensus       300 ~--~~~~-~~~~g~~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~~iR~s~~~-~~e~l~~~~~~l~~~~  374 (380)
T PRK06225        300 V--FLPV-YPSHGNMMVIDISEAGIDPEDLVEYLL-ERKIFVRQGTYTSKRFGDRYIRVSFSI-PREQVEVFCEEFPDVV  374 (380)
T ss_pred             C--cccc-CCCCCeEEEEEcccccCCHHHHHHHHH-HCCEEEcCCcccCcCCCCceEEEEeCC-CHHHHHHHHHHHHHHH
Confidence            1  1222 345566777643     33 3455555 569999886       2    999987 7899999999999999


Q ss_pred             HhcC
Q 012238          464 HNVS  467 (467)
Q Consensus       464 ~~~~  467 (467)
                      ++++
T Consensus       375 ~~~~  378 (380)
T PRK06225        375 ETLR  378 (380)
T ss_pred             HHhh
Confidence            8753

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=6.7e-39  Score=315.36  Aligned_cols=309  Identities=15%  Similarity=0.127  Sum_probs=235.3

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      .++|+|+.|++    .+++ ++.+.+++.+.+..+....| |..|.++||+++++++... +  +++++|++  |+|+++
T Consensus        19 ~~~i~l~~~~~----~~~~-p~~~~~~~~~~~~~~~~~~Y-~~~~~~~Lr~aia~~~~~~-~--~~~~~i~i--t~Ga~~   87 (335)
T PRK14808         19 RDRTYLALNEN----PFPF-PEDLVDEVFRRLNSDTLRIY-YDSPDEELIEKILSYLDTD-F--LSKNNVSV--GNGADE   87 (335)
T ss_pred             CceeEecCCCC----CCCC-CHHHHHHHHHHhhhhhhhcC-CCCChHHHHHHHHHHhCCC-C--CCcceEEE--cCCHHH
Confidence            48999999987    5655 78888888877654332446 4458999999999998654 2  56899999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      ++.++.   ..+   |.|++++|+|+.|...++..|++++.+|+++  ++.++...    +    .++++++++||||||
T Consensus        88 ~i~~~~---~~~---d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~----~----~~~~~i~i~nP~NPT  151 (335)
T PRK14808         88 IIYVMM---LMF---DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTK--DLRIPEVN----V----GEGDVVFIPNPNNPT  151 (335)
T ss_pred             HHHHHH---HHh---CcEEECCCCHHHHHHHHHHcCCeEEEecCCC--cCCCChhH----c----cCCCEEEEeCCCCCC
Confidence            999973   333   7899999999999999999999999999843  34344221    2    235688899999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (467)
                      |.+++.+++++|+    +++++||+||+|.+|...    ...   ......+++++++||||+|+++|+|+||++   ++
T Consensus       152 G~~~s~~~l~~l~----~~~~~ii~DE~Y~~f~~~----~~~---~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v---~~  217 (335)
T PRK14808        152 GHVFEREEIERIL----KTGAFVALDEAYYEFHGE----SYV---DLLKKYENLAVIRTFSKAFSLAAQRIGYVV---SS  217 (335)
T ss_pred             CCCcCHHHHHHHH----hcCCEEEEECchhhhcCC----chH---HHHHhCCCEEEEEechhhccCcccceEEEE---eC
Confidence            9999999998885    479999999999998521    111   223445689999999999999999999996   77


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238          323 SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  402 (467)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~  402 (467)
                      +++++.            +.+...  ..+.+.++|.++..++++.+       ...+..+.++++|+.+.+.|+ ++|  
T Consensus       218 ~~~~~~------------l~~~~~--~~~~~~~~q~a~~~~l~~~~-------~~~~~~~~~~~~r~~l~~~L~-~~g--  273 (335)
T PRK14808        218 EKFIDA------------YNRVRL--PFNVSYVSQMFAKVALDHRE-------IFEERTKFIVEERERMKSALR-EMG--  273 (335)
T ss_pred             HHHHHH------------HHHhcC--CCCCCHHHHHHHHHHHhCHH-------HHHHHHHHHHHHHHHHHHHHH-HCC--
Confidence            888887            655443  24567788888888876532       244566677788899999998 776  


Q ss_pred             CCcccccCCcceEEecCC---CHHHHHHHHHcccEEEeCCC---eEEeccCChhhHHHHHHHHHH
Q 012238          403 KDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG---RISLAGLSLAKCEYLADAIID  461 (467)
Q Consensus       403 ~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg---Ris~~~~~~~~i~~~~~~l~~  461 (467)
                        +++.+++|+ |+|+.+   +.+.+.+.+.++||.++...   ||+++.  .+++++++++|++
T Consensus       274 --~~~~~~~g~-f~~~~l~~~~~~~~~~~l~~~Gi~V~~~~~~~Risi~~--~~~~~~~~~~l~~  333 (335)
T PRK14808        274 --YRITDSRGN-FVFIFMEKEEKERLLEHLRAKNIAVRSFREGVRITIGK--REENDMILKELEV  333 (335)
T ss_pred             --CEECCCCCe-EEEEeCCCccHHHHHHHHHHCCeEEEECCCCeEEecCC--HHHHHHHHHHHHh
Confidence              566677655 667654   33444445556799998753   999885  5889999999875

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-38  Score=315.65  Aligned_cols=319  Identities=17%  Similarity=0.147  Sum_probs=244.3

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      +..++|+.|++    ..++ ++.+.+++.+.+.......|.+ .+.+++|+++|+++.      +++++|++  |+|+++
T Consensus        22 ~~~~~l~~~~~----~~~~-p~~~~~a~~~~~~~~~~~~y~~-~~~~~lr~~ia~~~~------~~~~~i~i--t~G~~~   87 (351)
T PRK14807         22 PYKYKMDANET----PFEL-PEEVIKNIQEIVKSSQVNIYPD-PTAEKLREELARYCS------VVPTNIFV--GNGSDE   87 (351)
T ss_pred             CceeEccCCCC----CCCC-CHHHHHHHHHHhhcCcccCCCC-ccHHHHHHHHHHHhC------CCcccEEE--ecCHHH
Confidence            35699999987    5554 7888888888765433466854 457999999999963      23789999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      ++.++  +...+.+||+|+++.|+|..|...++..|++++.++++  +++++|++.+++.++.  .+++++++++|||||
T Consensus        88 ~l~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~--~~~k~v~l~~p~NPt  161 (351)
T PRK14807         88 IIHLI--MLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK--EDYTYDVGSFIKVIEK--YQPKLVFLCNPNNPT  161 (351)
T ss_pred             HHHHH--HHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC--CCCCCCHHHHHHHhhc--cCCCEEEEeCCCCCC
Confidence            99987  33446799999999999999999999999999999984  3578999999999873  367788889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (467)
                      |.+++.+++.+++   ++++.++|+||+|.++. +.   ...   ...+..+++|+++||||.||+||+|+||++   ++
T Consensus       162 G~~~~~~~l~~l~---~~~~~~~ivDe~y~~~~-~~---~~~---~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v---~~  228 (351)
T PRK14807        162 GSVIEREDIIKII---EKSRGIVVVDEAYFEFY-GN---TIV---DVINEFENLIVLRTLSKAFGLAGLRVGYAV---AN  228 (351)
T ss_pred             CCCCCHHHHHHHH---HhCCCEEEEeCcchhhc-cc---chH---HHhhhCCCEEEEecchHhcccchhceeeee---cC
Confidence            9999999887774   45677899999998874 31   111   223445789999999999999999999996   78


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238          323 SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  402 (467)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~  402 (467)
                      +++++.            +......  .+.+.+.|.++..+|.++.        +++..+.++++|+.+.+.|+ ++.  
T Consensus       229 ~~~~~~------------~~~~~~~--~~~~~~~q~~~~~~l~~~~--------~~~~~~~~~~~r~~l~~~l~-~~~--  283 (351)
T PRK14807        229 ENILKY------------LNLVKSP--YNINSLSQVIALKVLRTGV--------LKERVNYILNERERLIKELS-KIP--  283 (351)
T ss_pred             HHHHHH------------HHHccCC--CCcCHHHHHHHHHHHhHHH--------HHHHHHHHHHHHHHHHHHHH-hCC--
Confidence            888887            5554433  3467788999988886531        33455567788888999998 652  


Q ss_pred             CCcccccCCcceEEecCC-CHHHHHHHHHcccEEEeCC-------C--eEEeccCChhhHHHHHHHHHHHH
Q 012238          403 KDWSFILRQIGMFSFTGL-NKAQSDNMTNKWHVYMTKD-------G--RISLAGLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       403 ~~~~~~~~~~g~f~~~~l-~~~~~~~ll~~~gI~v~~g-------g--Ris~~~~~~~~i~~~~~~l~~~l  463 (467)
                      + +.+.+ .+|+|+|+.+ +.+.+.+.+.++||.+.++       +  ||+++.  .++.++++++|++++
T Consensus       284 g-~~~~~-~~~~~~~i~~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~~--~~~~~~l~~~l~~~~  350 (351)
T PRK14807        284 G-IKVYP-SKTNFILVKFKDADYVYQGLLERGILVRDFSKVEGLEGALRITVSS--CEANDYLINGLKELL  350 (351)
T ss_pred             C-cEECc-CCccEEEEEcCCHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcCC--HHHHHHHHHHHHHhh
Confidence            2 56554 4567889876 3444444444569999764       1  999985  578899999998764

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=8.9e-39  Score=315.02  Aligned_cols=310  Identities=17%  Similarity=0.199  Sum_probs=239.5

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      .+.|+|+.|++    .+++ ++.+.+++.+.+.......| |..|.+++|+++++++.      +++++|++  |+|+++
T Consensus        18 ~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~Y-~~~g~~~lr~~ia~~~~------~~~~~I~~--t~G~~~   83 (337)
T PRK03967         18 NYRIWLDKNEN----PFDL-PEELKEEIFEELKRVPFNRY-PHITSDPLREAIAEFYG------LDAENIAV--GNGSDE   83 (337)
T ss_pred             CceEEecCCCC----CCCC-CHHHHHHHHHHhhcCccccC-CCCCHHHHHHHHHHHhC------cCcceEEE--cCCHHH
Confidence            36799999987    4443 67788888877643223668 56799999999999974      44889999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      ++.++   +..+ +||+|+++.|+|..|...++..|++++.++++  +++++|++.+++.+    .+++++++++|||||
T Consensus        84 ~l~~~---~~~~-~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~----~~~~~v~~~~P~NPt  153 (337)
T PRK03967         84 LISYL---VKLF-EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLK--EDFTIDGERIAEKA----KNASAVFICSPNNPT  153 (337)
T ss_pred             HHHHH---HHHh-CCCeEEEeCCChHHHHHHHHHcCCeEEEeecC--CCCCcCHHHHHHhc----cCCCEEEEeCCCCCC
Confidence            99886   3333 79999999999999999999999999999984  35789999998764    345677789999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (467)
                      |.+++.+++.+++    ++++++|+||+|.+|...    .   ...+....+++|+++||||+|++||+|+||++   ++
T Consensus       154 G~~~~~~~l~~i~----~~~~~ii~De~y~~~~~~----~---~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv---~~  219 (337)
T PRK03967        154 GNLQPEEEILKVL----ETGKPVVLDEAYAEFSGK----S---LIGLIDEYPNLILLRTFSKAFGLAGIRAGYAI---AN  219 (337)
T ss_pred             CCCCCHHHHHHHH----hcCCEEEEECchhhhccc----c---hHHHHhhCCCEEEEecchHhhcchhhhheeee---cC
Confidence            9999998777764    379999999999988632    1   11233445789999999999999999999996   77


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238          323 SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  402 (467)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~  402 (467)
                      +++++.            +.+....  .+++.++|.++..+|++.++       +.+..+.+.++|+.+.+.|. +..  
T Consensus       220 ~~~i~~------------~~~~~~~--~~~~~~~q~~~~~~l~~~~~-------~~~~~~~~~~~r~~l~~~L~-~~~--  275 (337)
T PRK03967        220 EEIIDA------------LYRIKPP--FSLNILTMKIVRLALDHYDL-------IEERIDYIIKERERVRRELG-EYA--  275 (337)
T ss_pred             HHHHHH------------HHhhcCC--CCCCHHHHHHHHHHHhCHHH-------HHHHHHHHHHHHHHHHHHhc-cCc--
Confidence            888877            6655443  35678899999988876432       33444555677888888887 532  


Q ss_pred             CCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCC-------eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          403 KDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDG-------RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       403 ~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~gg-------Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                            .+.+++|+|+.++  +.+.+++ +||.+++++       ||+++.  .++.++++++|+++...
T Consensus       276 ------~~~~~~~~~~~~~--~~~~l~~-~gi~v~~~~~~~~~~~Ri~~~~--~~~~~~l~~~l~~~~~~  334 (337)
T PRK03967        276 ------YPSDANFLLLKLD--AYDYLLE-NGIVVRKLSGRLEGHIRVTVGK--REENDEFIKALKEIKEG  334 (337)
T ss_pred             ------CCCCCcEEEEhHH--HHHHHHH-CCEEEEeCCCCCCCeEEEecCC--HHHHHHHHHHHHHHHHh
Confidence                  3567899998763  5566665 599997652       999985  57788888888887654

>PRK07908 hypothetical protein; Provisional

Probab=100.00  E-value=3.5e-38  Score=312.75  Aligned_cols=316  Identities=16%  Similarity=0.133  Sum_probs=244.3

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      ..++.+||+.|++    ..++ ++.+++++.+.+..  ...|.+..|.+++|+++++++.      +++++|++  |+|+
T Consensus        20 ~~~~~~~l~~~~~----~~~~-~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~~~------~~~~~I~i--t~Ga   84 (349)
T PRK07908         20 AGPGLLDFAVNVR----HDTP-PEWLRERLAARLGD--LAAYPSTEDERRARAAVAARHG------RTPDEVLL--LAGA   84 (349)
T ss_pred             CCCCeEEecCCCC----CCCC-CHHHHHHHHHHhhH--hhcCCCccchHHHHHHHHHHhC------cChhhEEE--CCCH
Confidence            3468999999986    4443 78889988887643  3679778899999999999963      34889999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      ++++.++   +. +.+ +.++++.|+|..+...++..|++++.+++++  ++++|++.+    +   .++++++++||||
T Consensus        85 ~~al~~~---~~-l~~-~~viv~~P~y~~~~~~~~~~G~~i~~v~~~~--~~~~d~~~l----~---~~~~~i~l~np~N  150 (349)
T PRK07908         85 AEGFALL---AR-LRP-RRAAVVHPSFTEPEAALRAAGIPVHRVVLDP--PFRLDPAAV----P---DDADLVVIGNPTN  150 (349)
T ss_pred             HHHHHHH---Hh-cCC-CeEEEeCCCChHHHHHHHHcCCEEEeeccCc--ccCcChhHh----c---cCCCEEEEcCCCC
Confidence            9999987   23 556 5677889999999999999999999999853  377888744    2   3566888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      |||.+++.+++.++   |+ ++.++|+||+|.++..+.    ..++..  ...+++++++||||.|+++|+|+||++   
T Consensus       151 PTG~~~~~~~l~~l---~~-~~~~iIvDe~y~~~~~~~----~~~l~~--~~~~~~i~i~S~SK~~~l~GlRiG~~~---  217 (349)
T PRK07908        151 PTSVLHPAEQLLAL---RR-PGRILVVDEAFADAVPGE----PESLAG--DDLPGVLVLRSLTKTWSLAGLRVGYAL---  217 (349)
T ss_pred             CCCCCcCHHHHHHH---Hh-cCCEEEEECcchhhccCC----cccccc--ccCCCEEEEeecccccCCccceeeeee---
Confidence            99999999866655   55 578899999999886432    112211  123579999999999999999999996   


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      +++++++.            +......  .+.+...+.++..++.+..     .+++++.+++++++|+.+.+.|+ +++
T Consensus       218 ~~~~~~~~------------~~~~~~~--~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~r~~l~~~L~-~~~  277 (349)
T PRK07908        218 GAPDVLAR------------LTRGRAH--WPVGTLQLEAIAACCAPRA-----VAEAAADAARLAADRAEMVAGLR-AVG  277 (349)
T ss_pred             cCHHHHHH------------HHhcCCC--CCccHHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHH-hCC
Confidence            77888877            5554433  2344556666666665322     23467788999999999999998 765


Q ss_pred             CCCCcccccCCcceEEecCCC-HHHHHHHHHcccEEEeCCC----------eEEeccCChhhHHHHHHHHHHHHH
Q 012238          401 SGKDWSFILRQIGMFSFTGLN-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       401 ~~~~~~~~~~~~g~f~~~~l~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                          +++..|.+|+|+|+.++ .+++.++++++||.+.+|.          |||++  +++++++++++|++++.
T Consensus       278 ----~~~~~p~~g~~~~~~~~~~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~--~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        278 ----ARVVDPAAAPFVLVRVPDAELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR--PRAEVPVLVQALAEILK  346 (349)
T ss_pred             ----cEeccCCCceEEEEECCcHHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC--CCccHHHHHHHHHHHHh
Confidence                57777788999999774 4556666677899998861          99996  56899999999998764

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=4e-38  Score=310.20  Aligned_cols=320  Identities=15%  Similarity=0.129  Sum_probs=235.4

Q ss_pred             CCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCc
Q 012238           66 PPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNS  145 (467)
Q Consensus        66 ~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~  145 (467)
                      ++..+..+...++.. ..++|+|+..++    ..+++++.+..   ..     ...| |... .+||+++|+++.-.   
T Consensus         8 hg~~~~~~~~~~~~~-~~~~i~ls~Nen----p~~~~~~~~~~---~~-----~~~Y-p~~~-~~L~~~ia~~~~~~---   69 (339)
T PRK06959          8 HGGNLHEAARRYGIP-YDAWLDLSTGIN----PHGYPVPPVPA---DA-----WRRL-PEDD-DGLAACAARYYGAP---   69 (339)
T ss_pred             CCchHHHHHHHcCCC-hhhhceeccCCC----CCCCCCCCCCH---HH-----HHhC-CCch-HHHHHHHHHHhCCC---
Confidence            444444444443322 136899998775    33321122211   11     1347 4444 89999999996442   


Q ss_pred             ccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc
Q 012238          146 VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA  225 (467)
Q Consensus       146 ~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~  225 (467)
                        ++++|++  |+|+++++.++   ...+.+|| |+++.|+|+.|...++..|++++.++.++        +.+    . 
T Consensus        70 --~~~~I~i--~~Gs~e~i~~l---~~~~~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~~--------~~~----~-  128 (339)
T PRK06959         70 --DAAHVLP--VAGSQAAIRAL---PALLPRGR-VGIAPLAYSEYAPAFARHGHRVVPLDEAA--------DTL----P-  128 (339)
T ss_pred             --CcccEEE--CcCHHHHHHHH---HHhcCCCe-EEEcCCCcHHHHHHHHHCCCEEEeecccc--------hhc----c-
Confidence              2579999  99999999875   33456776 89999999999999999999999887631        112    1 


Q ss_pred             CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC
Q 012238          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (467)
Q Consensus       226 ~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (467)
                        ...+++++||||||||.+++.+++++|++.|++++.++|+||+|.+|.+.      .++..+. ..+++++++||||.
T Consensus       129 --~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~------~s~~~~~-~~~~vi~l~SfSK~  199 (339)
T PRK06959        129 --AALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA------ASLAAHT-DRPGLVVLRSVGKF  199 (339)
T ss_pred             --ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc------ccchhcc-CCCCEEEEecChhh
Confidence              23347888999999999999999999999999999999999999998642      1222222 34679999999999


Q ss_pred             cccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238          306 LGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  385 (467)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~  385 (467)
                      ||+||+|+||++   +++++++.            +.+....  .+.+.++|.++..+|+++++       .++.++.++
T Consensus       200 ~gl~GlRiGy~v---~~~~li~~------------l~~~~~~--~~vs~~~q~a~~~~L~~~~~-------~~~~~~~~~  255 (339)
T PRK06959        200 FGLAGVRAGFVL---AAPALLAA------------LRDALGA--WTVSGPARHAVRAAFADAAW-------QAAMRERLA  255 (339)
T ss_pred             cCCcchheEEEe---cCHHHHHH------------HHHhcCC--CCCcHHHHHHHHHHhCcHHH-------HHHHHHHHH
Confidence            999999999996   78888887            6665543  34677889999999987543       456789999


Q ss_pred             HHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-CH-HHHHHHHHcccEEEeCCC-----eEEeccCChhhHHHHHHH
Q 012238          386 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-NK-AQSDNMTNKWHVYMTKDG-----RISLAGLSLAKCEYLADA  458 (467)
Q Consensus       386 ~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-~~-~~~~~ll~~~gI~v~~gg-----Ris~~~~~~~~i~~~~~~  458 (467)
                      ++|+.+.+.|+ ++|    +++.  .+++|+|+++ +. ++.+.++ ++||.++..+     ||+++. +.+++++++++
T Consensus       256 ~~r~~l~~~L~-~~g----~~~~--~~~~f~~~~~~~~~~l~~~l~-~~GI~vr~~~~~~~lRisi~~-~~~e~~~l~~a  326 (339)
T PRK06959        256 ADGARLAALLR-AHG----FAVH--ATPLFSWTDDPRAAALHAALA-RRGIWTRYFAPPPSVRFGLPA-DEAEWQRLEDA  326 (339)
T ss_pred             HHHHHHHHHHH-HCC----CCcc--CcceEEEEeCCCHHHHHHHHH-hCCeEEEECCCCCeEEEECCC-CHHHHHHHHHH
Confidence            99999999999 876    3443  3578999876 33 4455555 5699998753     999965 66899999999


Q ss_pred             HHHHHHhc
Q 012238          459 IIDSYHNV  466 (467)
Q Consensus       459 l~~~l~~~  466 (467)
                      |+++++.+
T Consensus       327 l~~~~~~~  334 (339)
T PRK06959        327 LAECVPTL  334 (339)
T ss_pred             HHHHHHHH
Confidence            99887654

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=3.2e-38  Score=314.17  Aligned_cols=296  Identities=20%  Similarity=0.239  Sum_probs=231.5

Q ss_pred             CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHhhCC
Q 012238          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDAR  198 (467)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~g-d~Vlv~~P~y~~~~~~~~~~G  198 (467)
                      ..|+ ..+.++||+++|+++.      +++++|++  |+|+++++.++  +...+.+| |+|++++|+|..|...++..|
T Consensus        54 ~~Y~-~~~~~~lr~~ia~~~~------~~~~~I~~--t~G~~~~l~~~--~~~~~~~g~~~vlv~~p~y~~~~~~~~~~g  122 (364)
T PRK04781         54 RRYP-DPQPPGLRSALAALYG------CAPEQLLI--GRGSDEAIDLL--VRALCVPGRDAVLVTPPVFGMYAVCARLQN  122 (364)
T ss_pred             ccCC-CCCHHHHHHHHHHHhC------cChHHEEE--eCCHHHHHHHH--HHHhcCCCCCeEEEcCCChHHHHHHHHHcC
Confidence            5674 4457999999999973      34889999  99999999997  33345688 799999999999999999999


Q ss_pred             CCeEEeeeec-CCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCC
Q 012238          199 VPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASG  277 (467)
Q Consensus       199 ~~~~~v~~~~-~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~  277 (467)
                      ++++.+|+++ ++++.+|++.+++.+..  ++++++++++||||||.+++.+++++|++.|+ ++++||+||+|.+|.+.
T Consensus       123 ~~~~~v~~~~~~~~~~~d~~~l~~~~~~--~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~  199 (364)
T PRK04781        123 APLVEVPLVDGADGFHADVPAIVAAALA--SNAKLVFLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSDV  199 (364)
T ss_pred             CEEEEEecCCCccCCCcCHHHHHHHHhc--cCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCC
Confidence            9999999843 34566899988766543  56788888999999999999999999999885 47899999999999753


Q ss_pred             CCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHH
Q 012238          278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGA  357 (467)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  357 (467)
                      .      +...+.+..+++++++||||+||+||+|+||++   +++++++.            +.+....  .+.+.+.|
T Consensus       200 ~------~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v---~~~~l~~~------------l~~~~~~--~~~~~~~~  256 (364)
T PRK04781        200 P------SAVGLLARYDNLAVLRTLSKAHALAAARIGSLI---ANAELIAV------------LRRCQAP--YPVPTPCA  256 (364)
T ss_pred             c------chHHHHhhCCCEEEEecChhhcccccceeeeee---CCHHHHHH------------HHhccCC--CCCCHHHH
Confidence            1      112333556789999999999999999999996   88888887            6666543  35677788


Q ss_pred             HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-CHHHHHHHHHcccEEE
Q 012238          358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-NKAQSDNMTNKWHVYM  436 (467)
Q Consensus       358 ~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-~~~~~~~ll~~~gI~v  436 (467)
                      .++..+|.++.+    . ...+..+.++++|+.+.+.|+ .++  + +....|.+|+|+|+.+ +.+.+.+.++++||.+
T Consensus       257 ~~a~~~l~~~~~----~-~~~~~~~~~~~~r~~l~~~L~-~~~--~-~~~~~p~~g~f~~~~~~~~~~~~~~l~~~gI~v  327 (364)
T PRK04781        257 ALAEQALSAPAL----A-VTARRVAEVRAERERLHAALA-QLP--G-VRRVYPSQGNFLLVRFDDAEAAFQALLAAGVVV  327 (364)
T ss_pred             HHHHHHHhcccH----H-HHHHHHHHHHHHHHHHHHHHH-hCC--C-CCeECCCCCcEEEEEcCCHHHHHHHHHHCCeEE
Confidence            888888877532    1 233455578899999999998 763  1 4334567789999976 3444444555679999


Q ss_pred             eCCC---------eEEeccCChhhHHHHHHHHHHHH
Q 012238          437 TKDG---------RISLAGLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       437 ~~gg---------Ris~~~~~~~~i~~~~~~l~~~l  463 (467)
                      .+|.         ||+++.  ++++++++++|+++.
T Consensus       328 ~~~~~~~~~~~~~Ris~~~--~~~~~~l~~al~~~~  361 (364)
T PRK04781        328 RDQRAAPRLSDALRITLGT--PEQNDRVLAALQRTQ  361 (364)
T ss_pred             eeCCCCCCCCCeEEEeCCC--HHHHHHHHHHHHHHH
Confidence            8861         999985  688999999998764

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=2.7e-38  Score=311.03  Aligned_cols=285  Identities=14%  Similarity=0.112  Sum_probs=217.2

Q ss_pred             CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCC
Q 012238          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV  199 (467)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~  199 (467)
                      ..| |..-..+||+++|+++...      +++|++  |+|+++++.++.   ..+.+| .|++++|+|+.|...++..|+
T Consensus        35 ~~Y-p~~~~~~lr~~ia~~~~~~------~~~I~i--t~Gs~~~l~~~~---~~~~~~-~vv~~~P~y~~y~~~~~~~G~  101 (332)
T PRK06425         35 SIY-PEISYTDIEDQIKIYTQGL------KIKVLI--GPGLTHFIYRLL---SYINVG-NIIIVEPNFNEYKGYAFTHGI  101 (332)
T ss_pred             ccC-cCcCHHHHHHHHHHHhCCC------cceEEE--CCCHHHHHHHHH---HHhCCC-cEEEeCCChHHHHHHHHHcCC
Confidence            457 6666889999999996543      788999  999999999973   345676 577779999999999999999


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.+|+++   +++|.+.++    .  .+++++++||||||||.+++.+++++|+++|+++|++||+||+|.+|.++. 
T Consensus       102 ~v~~vp~~~---~~~~~~~l~----~--~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~-  171 (332)
T PRK06425        102 RISALPFNL---INNNPEILN----N--YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNR-  171 (332)
T ss_pred             eEEEEeCCc---ccCcHHHHh----h--cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhcccccc-
Confidence            999999842   345654443    2  356688889999999999999999999999999999999999999998642 


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARI  359 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  359 (467)
                         ..+...+....+++|+++||||.|++||+|+||++   +++++++.            +.+...+.  ..+...+  
T Consensus       172 ---~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v---~~~~li~~------------l~~~~~~~--~~~~~~~--  229 (332)
T PRK06425        172 ---AEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIA---TDDYNMKI------------SRKITEPW--SVCDPAI--  229 (332)
T ss_pred             ---chhHHHHhccCCCEEEEeecHHhcCCchhhheeee---cCHHHHHH------------HHHcCCCC--ccCHHHH--
Confidence               11233344445789999999999999999999996   78888887            55543332  2222222  


Q ss_pred             HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-C-HHHHHHHHHcccEEEe
Q 012238          360 VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-N-KAQSDNMTNKWHVYMT  437 (467)
Q Consensus       360 ~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-~-~~~~~~ll~~~gI~v~  437 (467)
                        .++....    +..++++.++.++++|+.+.+.|+ ++|    +.+..+.+|+|+|+.+ + .++.+.+++ +||.+.
T Consensus       230 --~~l~~~~----~~~~~~~~~~~~~~~r~~l~~~L~-~~g----~~~~~~~~g~f~~~~~~~~~~~~~~l~~-~gi~v~  297 (332)
T PRK06425        230 --DFIRSID----LDYVAKHSLDIMENERSYLINNLE-AMG----FRAAGDPSANFITFMIPDAHDFYSYLLK-NGILVR  297 (332)
T ss_pred             --HHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHH-HCC----CEECCCCCceEEEEEcCCHHHHHHHHHH-CCeEEE
Confidence              2222211    133456788999999999999999 876    4555444567888865 3 455666665 699998


Q ss_pred             CC--------C--eEEeccCChhhHHHHHHHHHHHH
Q 012238          438 KD--------G--RISLAGLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       438 ~g--------g--Ris~~~~~~~~i~~~~~~l~~~l  463 (467)
                      +|        +  ||+++.  ++++++++++|++++
T Consensus       298 ~~~~f~~~~~~~iRis~~~--~~~~~~l~~al~~~~  331 (332)
T PRK06425        298 LLDDYECLGEQYIRIAIRR--RSFNIKLVNALRNFL  331 (332)
T ss_pred             ECCCCCCCCCCEEEEEeCC--HHHHHHHHHHHHHHh
Confidence            86        1  999985  589999999999875

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=7.9e-38  Score=312.53  Aligned_cols=323  Identities=15%  Similarity=0.137  Sum_probs=251.8

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      ...++|+|+.|.+    ...+ ++.+.+++.+....  ...|++. +..++|+++|+++..      ++++|++  |+|+
T Consensus        30 ~~~~~i~l~~~~~----~~~~-~~~~~~a~~~~~~~--~~~y~~~-~~~~lr~~ia~~~~~------~~~~i~~--t~G~   93 (367)
T PRK02731         30 GIADIIKLASNEN----PLGP-SPKAIEAIRAAADE--LHRYPDG-SGFELKAALAEKFGV------DPERIIL--GNGS   93 (367)
T ss_pred             CCCceEEecCCCC----CCCC-CHHHHHHHHHHHHh--hcCCCCC-cHHHHHHHHHHHhCc------CHHHEEE--cCCH
Confidence            3457999999976    2333 66788888877643  3678554 457999999999732      3789999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      ++++.++  +...+.+||+|+++.|+|..|...++..|++++.++.+   ++++|++.+++.++   ++++++++++|||
T Consensus        94 ~~~l~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~~~~~l~~~~~---~~~~~v~l~~p~n  165 (367)
T PRK02731         94 DEILELL--ARAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPAK---DYGHDLDAMLAAVT---PRTRLVFIANPNN  165 (367)
T ss_pred             HHHHHHH--HHHhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEeccc---CCCCCHHHHHHHhC---CCCcEEEEeCCCC
Confidence            9999887  33346799999999999999998889999999998872   46799999999886   4677888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      |||.+++.+++++|++.++ +|+++|+||+|.++.+++.  ...++ ...+..+++++++||||.||++|+|+||++   
T Consensus       166 ptG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~--~~~~~-~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~---  238 (367)
T PRK02731        166 PTGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKD--YEDGL-ELVAKFPNVVVTRTFSKAYGLAGLRVGYGI---  238 (367)
T ss_pred             CCCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcC--cccHH-HHHhhcCCEEEEeeehHhhcCcccceeeee---
Confidence            9999999999999998875 6999999999998887532  12223 233455789999999999999999999996   


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      +++++++.            +......  .+.+.++|.++..+|++..       .+++.++.++++++.+.+.|+ +.|
T Consensus       239 ~~~~~~~~------------l~~~~~~--~~~~~~~~~~a~~~l~~~~-------~~~~~~~~~~~~~~~l~~~L~-~~g  296 (367)
T PRK02731        239 APPEIIDA------------LNRVRQP--FNVNSLALAAAVAALDDDA-------FVEKSRALNAEGMAWLTEFLA-ELG  296 (367)
T ss_pred             CCHHHHHH------------HHHccCC--CCCCHHHHHHHHHHhCCHH-------HHHHHHHHHHHHHHHHHHHHH-HCC
Confidence            77888777            5554433  3456788889888887542       256778888899999999998 776


Q ss_pred             CCCCcccccCCcceEEecCC----CH-HHHHHHHHcccEEEeCC------C--eEEeccCChhhHHHHHHHHHHHHH
Q 012238          401 SGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       401 ~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                          +.+.+ .+|+|+|+.+    +. ++.+.+. ++||.+.++      +  ||+++  +.+++++++++|+++++
T Consensus       297 ----~~~~~-~~g~~~~i~~~~~~~~~~~~~~L~-~~gI~v~~~~~~~~~~~iRis~~--~~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        297 ----LEYIP-SVGNFILVDFDDGKDAAEAYQALL-KRGVIVRPVAGYGLPNALRITIG--TEEENRRFLAALKEFLA  365 (367)
T ss_pred             ----CccCC-CCceEEEEECCCCCCHHHHHHHHH-HCCEEEEeCCCCCCCCeEEEecC--CHHHHHHHHHHHHHHHh
Confidence                45554 4567888865    33 4455555 569999986      2  99997  46889999999998875

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2e-38  Score=314.20  Aligned_cols=311  Identities=18%  Similarity=0.204  Sum_probs=237.8

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (467)
                      ..|+|+.+++    .+++ ++.+        .......| |.....+++++++++++      +++++|++  |+|++++
T Consensus        29 ~~~~l~~Nen----p~~~-~~~~--------~~~~~~~Y-p~~~~~~l~~~~a~~~g------~~~~~I~~--~~Gs~e~   86 (351)
T PRK01688         29 GDVWLNANEY----PTAV-EFQL--------TQQTLNRY-PECQPKAVIENYAAYAG------VKPEQVLV--SRGADEG   86 (351)
T ss_pred             CceEecCCCC----CCCC-Chhh--------cccccccC-CCCChHHHHHHHHHHhC------CCHHHEEE--cCCHHHH
Confidence            4699998765    4443 3332        11123567 55556899999999953      24889999  9999999


Q ss_pred             HHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          164 LRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       164 l~l~~~~l~~~~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      +.++  +...+.+| |+|+++.|+|..|...++..|++++.++++  +++++|++.+++.+.    ++++++++||||||
T Consensus        87 i~~~--~~~~~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~--~~~~~d~~~l~~~~~----~~~lv~l~nPnNPT  158 (351)
T PRK01688         87 IELL--IRAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTL--DNWQLDLPAIADNLD----GVKVVYVCSPNNPT  158 (351)
T ss_pred             HHHH--HHHhcCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecC--CCCCCCHHHHHHhcc----CCcEEEEeCCCCCC
Confidence            9998  33345687 899999999999999999999999999984  358899999988763    56788899999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (467)
                      |.+++.+++++|++.|++ +.+||+||+|.+|...   .   +...+....+++++++||||.||++|+|+||++   ++
T Consensus       159 G~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~---~---s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i---~~  228 (351)
T PRK01688        159 GNLINPQDLRTLLELTRG-KAIVVADEAYIEFCPQ---A---SLAGWLAEYPHLVILRTLSKAFALAGLRCGFTL---AN  228 (351)
T ss_pred             CCCCCHHHHHHHHHhCCC-CcEEEEECchhhcCCC---C---ChHHHHhhCCCEEEEecchHhhcCHHHHHhHHh---CC
Confidence            999999999999999876 6889999999998732   1   122334556799999999999999999999995   78


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238          323 SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  402 (467)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~  402 (467)
                      +++++.            +.+...+  .+++.+.|.++..+|.+..     .+.+++.++.++++|+++.+.|+ .++. 
T Consensus       229 ~~~i~~------------l~~~~~~--~~v~~~~~~~a~~~L~~~~-----~~~~~~~~~~~~~~r~~l~~~L~-~~~~-  287 (351)
T PRK01688        229 EEVINL------------LLKVIAP--YPLSTPVADIAAQALSPQG-----IAAMRERVAEINANRQWLIAALK-EIPC-  287 (351)
T ss_pred             HHHHHH------------HHhccCC--CCCCHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHHHHH-hCCC-
Confidence            888887            6655443  3466677778877887532     12356777888899999999998 7741 


Q ss_pred             CCcccccCCcceEEecCCC--HHHHHHHHHcccEEEeCC----C-----eEEeccCChhhHHHHHHHHH
Q 012238          403 KDWSFILRQIGMFSFTGLN--KAQSDNMTNKWHVYMTKD----G-----RISLAGLSLAKCEYLADAII  460 (467)
Q Consensus       403 ~~~~~~~~~~g~f~~~~l~--~~~~~~ll~~~gI~v~~g----g-----Ris~~~~~~~~i~~~~~~l~  460 (467)
                        +....|.+++|+|+.+.  .++.+.|+ ++||.++++    |     |||++.  ++++++++++|+
T Consensus       288 --~~~~~ps~~nfi~~~~~~~~~l~~~L~-~~gi~vr~~~~~~~~~~~iRis~~~--~~e~~~l~~al~  351 (351)
T PRK01688        288 --VEQVFDSETNYILARFTASSAVFKSLW-DQGIILRDQNKQPGLSNCLRITIGT--REECQRVIDALR  351 (351)
T ss_pred             --CCeECCCCCcEEEEEcCCHHHHHHHHH-HCCeEEEECCCcCCCCCeEEEeCCC--HHHHHHHHHhhC
Confidence              44344566779988763  34455666 469999864    2     999984  689999988873

>PRK03321 putative aminotransferase; Provisional

Probab=100.00  E-value=4.9e-38  Score=312.20  Aligned_cols=322  Identities=16%  Similarity=0.162  Sum_probs=248.4

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (467)
                      ++|+|+.|.+    ..++ ++.+.+++.+.+..  ...| |..|.+++|+++|+++.      +++++|++  |+|++++
T Consensus        23 ~~i~l~~~~~----~~~~-~~~~~~a~~~~~~~--~~~y-~~~g~~~lr~~ia~~~~------~~~~~I~~--~~G~~~~   86 (352)
T PRK03321         23 GAIKLSSNET----PFGP-LPSVRAAIARAAAG--VNRY-PDMGAVELRAALAEHLG------VPPEHVAV--GCGSVAL   86 (352)
T ss_pred             cceeccCCCC----CCCC-CHHHHHHHHHHHHh--cCcC-CCCcHHHHHHHHHHHhC------cCHHHEEE--CCCHHHH
Confidence            6899999987    4444 66889988877643  2557 56899999999999975      33789999  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCC
Q 012238          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG  243 (467)
Q Consensus       164 l~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG  243 (467)
                      +.++  +...+.+||+|+++.|+|..|...++..|++++.+++++  ++++|++.+++.++   .+++++++++||||||
T Consensus        87 l~~~--~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~~~---~~~~~v~l~~p~NPtG  159 (352)
T PRK03321         87 CQQL--VQATAGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTP--DHTHDLDAMAAAIT---DRTRLIFVCNPNNPTG  159 (352)
T ss_pred             HHHH--HHHhcCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCC--CCCCCHHHHHHhhc---cCCCEEEEeCCCCCcC
Confidence            9887  333467999999999999999999999999999999842  36799999999886   4667888899999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCH
Q 012238          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (467)
Q Consensus       244 ~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~  323 (467)
                      .+++.+++.++++.+ ++|++||+||+|.++.+++.  ...++ ......+++++++||||.||+||+|+||++   +++
T Consensus       160 ~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~--~~~~~-~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v---~~~  232 (352)
T PRK03321        160 TVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDDD--VPDGL-ELVRDHPNVVVLRTFSKAYGLAGLRVGYAV---GHP  232 (352)
T ss_pred             CCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCcC--CCcHH-HHHhhCCCEEEEecchHHhhhHHHhhhhhc---CCH
Confidence            999999999998865 47999999999999987531  11222 223445789999999999999999999996   778


Q ss_pred             HHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 012238          324 DLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK  403 (467)
Q Consensus       324 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~  403 (467)
                      ++++.            +.+...  ..+.+.++|.++..+|...+   .    ..+..+++.++|+.+.+.|+ +.|   
T Consensus       233 ~~~~~------------~~~~~~--~~~~s~~~q~~a~~~l~~~~---~----~~~~~~~~~~~r~~~~~~L~-~~~---  287 (352)
T PRK03321        233 EVIAA------------LRKVAV--PFSVNSLAQAAAIASLAAED---E----LLERVDAVVAERDRVRAALR-AAG---  287 (352)
T ss_pred             HHHHH------------HHHhcC--CCCCCHHHHHHHHHHhcCHH---H----HHHHHHHHHHHHHHHHHHHH-HCC---
Confidence            88887            554432  34677888888877776421   1    22333445566778889998 766   


Q ss_pred             CcccccCCcceEEecCC--CH-HHHHHHHHcccEEEeCCC----eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          404 DWSFILRQIGMFSFTGL--NK-AQSDNMTNKWHVYMTKDG----RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       404 ~~~~~~~~~g~f~~~~l--~~-~~~~~ll~~~gI~v~~gg----Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                       +.+.+ .+|+|+|+.+  +. ++.+.+ +++||.+.+.+    ||+++  ..+++++++++|++++..
T Consensus       288 -~~~~~-~~g~~i~i~l~~~~~~~~~~l-~~~gI~v~~~~~~~iRi~~~--~~~~~~~~~~al~~~~~~  351 (352)
T PRK03321        288 -WTVPP-SQANFVWLPLGERTADFAAAA-AEAGVVVRPFAGEGVRVTIG--APEENDAFLRAARAWRAG  351 (352)
T ss_pred             -CccCC-CCCCEEEEeCCCCHHHHHHHH-HHCCEEEEccCCCcEEEeeC--CHHHHHHHHHHHHHHhcc
Confidence             45444 4578899865  23 345554 56799999864    99987  468999999999998754

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=100.00  E-value=2.2e-37  Score=304.20  Aligned_cols=300  Identities=15%  Similarity=0.161  Sum_probs=225.9

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (467)
                      ++|+|+.+++    ..++.++.+.+   ..+     ..| |. +..+||+++++++.        +++|++  |+|++++
T Consensus        21 ~~i~l~~ne~----p~~~~~~~~~~---~~~-----~~y-p~-~~~~Lr~~ia~~~~--------~~~I~i--t~Gs~~a   76 (330)
T PRK05664         21 DWLDLSTGIA----PWPWPVPAIPA---DAW-----ARL-PE-TDDGLEAAARAYYG--------APQLLP--VAGSQAA   76 (330)
T ss_pred             HheeecCCcC----CCCCCCcccCH---HHH-----HhC-CC-ChHHHHHHHHHHhC--------CCCEEE--CcCHHHH
Confidence            6799999865    22221222221   111     236 32 34899999999963        368999  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCC
Q 012238          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG  243 (467)
Q Consensus       164 l~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG  243 (467)
                      +.++  +  .+.+||+|++++|+|+.|...++..|++++.+|++          .+++.++    +++++++++||||||
T Consensus        77 l~~~--~--~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~~----------~~~~~~~----~~~~v~l~nP~NPTG  138 (330)
T PRK05664         77 IQAL--P--RLRAPGRVGVLSPCYAEHAHAWRRAGHQVRELDEA----------EVEAALD----SLDVLVVVNPNNPTG  138 (330)
T ss_pred             HHHH--H--HccCCCEEEEcCCChHHHHHHHHHcCCeEEEechh----------hHhhhhc----CCCEEEEeCCcCCCC
Confidence            9986  2  35799999999999999999999999999998762          3444443    345778899999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCH
Q 012238          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (467)
Q Consensus       244 ~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~  323 (467)
                      .+++.+++++|+++|+++|++||+||+|.++...      .++..+ ...+++++++||||.||+||+|+||++   +++
T Consensus       139 ~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~------~s~~~~-~~~~~vi~~~SfSK~~gl~GlRiG~~v---~~~  208 (330)
T PRK05664        139 RRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQ------HSLAAC-AHRPGLIVLRSFGKFFGLAGARLGFVL---AEP  208 (330)
T ss_pred             CccCHHHHHHHHHHHHhcCCEEEEECCcccCCCc------cccccc-ccCCCEEEEeeccccccCCCcceEEEE---eCH
Confidence            9999999999999999999999999999877521      122222 234689999999999999999999996   788


Q ss_pred             HHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 012238          324 DLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK  403 (467)
Q Consensus       324 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~  403 (467)
                      ++++.            +......  .+.+...|.++..+|.+..+       .+..++.++++|+.+.+.|+ ++|+  
T Consensus       209 ~l~~~------------~~~~~~~--~~~~~~~~~~~~~~L~~~~~-------~~~~~~~~~~~r~~l~~~L~-~~~~--  264 (330)
T PRK05664        209 ALLRA------------LAELLGP--WTVSGPTRWLAQAALADTPW-------QRRQRERLLAASQRLAALLR-RHGL--  264 (330)
T ss_pred             HHHHH------------HHHhcCC--CCCCHHHHHHHHHHHhChHH-------HHHHHHHHHHHHHHHHHHHH-HCCC--
Confidence            88887            6555443  24567788888888876432       45678889999999999999 7762  


Q ss_pred             CcccccCCcc--eEEecCC-CHHHHHHHHHcccEEEeCCC-----eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          404 DWSFILRQIG--MFSFTGL-NKAQSDNMTNKWHVYMTKDG-----RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       404 ~~~~~~~~~g--~f~~~~l-~~~~~~~ll~~~gI~v~~gg-----Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                        .   +.+|  +|+|+.. +.+.+.+.+.++||.+...+     ||+++. +.++++++.++|+++.++
T Consensus       265 --~---~~~~~~~f~~~~~~~~~~~~~~l~~~gi~v~~f~~~~~iRis~~~-~~~~~~~l~~al~~~~~~  328 (330)
T PRK05664        265 --T---PAGGCALFQWVRTEDAAALHEFLARRGILTRLFEQPASLRFGLPA-DEADWARLDQALLAYRKE  328 (330)
T ss_pred             --c---ccCCcceEEEEecCCHHHHHHHHHHCCeEEEECCCCCeEEEECCC-CHHHHHHHHHHHHHHHhh
Confidence              2   3344  7888865 44444444556799997643     999996 567899999999887654

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-37  Score=308.32  Aligned_cols=312  Identities=16%  Similarity=0.143  Sum_probs=236.9

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      .+.|+|+.+++    ..++ ++.+     . .. . ...|+ ..+.++||+++|+++.      +++++|++  |+|+++
T Consensus        31 ~~~~~l~~ne~----~~~~-~~~~-----~-~~-~-~~~Yp-~~~~~~Lr~aia~~~~------~~~~~I~i--t~Gs~~   88 (354)
T PRK04635         31 RGDIWINANES----PFNN-EYKL-----D-LA-R-LNRYP-ECQPPELINAYSAYAG------VAPEQILT--SRGADE   88 (354)
T ss_pred             CCcEEeeCCCC----CCCC-Chhh-----h-hH-H-hccCC-CCCHHHHHHHHHHHhC------cCHHHEEE--eCCHHH
Confidence            35699998876    4443 3322     1 11 1 26684 4568999999999863      34889999  999999


Q ss_pred             HHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          163 SLRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       163 al~l~~~~l~~~~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      ++.++  +...+.+| |+|+++.|+|..|...++..|++++.+|++  .++.+|++.+++ +    +++++++++|||||
T Consensus        89 ~i~~~--~~~~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~--~~~~~~~~~l~~-~----~~~~li~i~nP~NP  159 (354)
T PRK04635         89 AIELL--IRAFCEPGQDSIACFGPTYGMYAISAETFNVGVKALPLT--ADYQLPLDYIEQ-L----DGAKLVFICNPNNP  159 (354)
T ss_pred             HHHHH--HHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecC--CCCCCCHHHHHh-c----cCCCEEEEeCCCCC
Confidence            99998  33345688 899999999999999999999999999984  357789988863 2    36778899999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|++.|+  +++||+||+|.+|...   .   +...+....+++++++||||.||++|+|+||++   +
T Consensus       160 TG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~~~---~---s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i---~  228 (354)
T PRK04635        160 TGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFCPE---Y---SVADLLASYPNLVVLRTLSKAFALAGARCGFTL---A  228 (354)
T ss_pred             CCccCCHHHHHHHHHhCC--CcEEEEeCchHhhccC---c---chHHHHhhCCCEEEEechHHHhhhhHHHHhhhh---C
Confidence            999999999999998876  4999999999988632   1   222333455789999999999999999999995   7


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +......  .+.+...|.++..+|.+...     +.+++.++.++++|+.+.+.|+ +++.
T Consensus       229 ~~~~~~~------------l~~~~~~--~~~~~~~~~~a~~~l~~~~~-----~~~~~~~~~~~~~r~~l~~~L~-~~~~  288 (354)
T PRK04635        229 NEELIEI------------LMRVIAP--YPVPLPVSEIATQALSEAGL-----ARMKFQVLDLNAQGARLQAALS-MYGG  288 (354)
T ss_pred             CHHHHHH------------HHhhcCC--CCCCHHHHHHHHHHHhcccH-----HHHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence            8888877            5544332  34566677788777765432     2356677888999999999999 7652


Q ss_pred             CCCcccccCCcceEEecCC-CHHHHHHHHHcccEEEeCC------C--eEEeccCChhhHHHHHHHHHHH
Q 012238          402 GKDWSFILRQIGMFSFTGL-NKAQSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l-~~~~~~~ll~~~gI~v~~g------g--Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                         +.+.+++ |.|+|+.+ +.+.+.++++++||.++.+      +  |||++.  .+++++++++|++-
T Consensus       289 ---~~~~~~~-g~f~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~lRis~~~--~e~~~~l~~al~~~  352 (354)
T PRK04635        289 ---AKVLEGN-GNYVLAKFDDVDAVFKALWDAGIVARAYKDPRLANCIRFSFSN--RAETDKLIGLIRNQ  352 (354)
T ss_pred             ---ceECCCC-CcEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeCC--HHHHHHHHHHHHHh
Confidence               4566665 56888766 4444555666789998754      2  999984  68999999998764

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=100.00  E-value=7.7e-37  Score=302.95  Aligned_cols=315  Identities=16%  Similarity=0.196  Sum_probs=246.7

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      .++|||++|.+    +.++ ++.+.+++.+....  ...|.+..+ +++|+++|+++.      +++++|++  |+|+++
T Consensus        19 ~~~i~l~~~~~----~~~~-~~~~~~a~~~~~~~--~~~y~~~~~-~~lr~~ia~~~~------~~~~~i~~--~~G~~~   82 (346)
T TIGR01141        19 KEVIKLNSNEN----PFGP-PPKAKEALRAEADK--LHRYPDPDP-AELKQALADYYG------VDPEQILL--GNGSDE   82 (346)
T ss_pred             CceEEccCCCC----CCCC-CHHHHHHHHHhHHH--hhcCCCCCH-HHHHHHHHHHhC------cChHHEEE--cCCHHH
Confidence            47999999987    5554 77788988887642  267866555 899999999975      23789999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      ++..+  +...+.+||+|++++|+|+.|...++..|++++.+++++  ++.+|++.+++.+.   ++++++++++|+|||
T Consensus        83 ~l~~~--~~~l~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~~~---~~~~~v~l~~p~Npt  155 (346)
T TIGR01141        83 IIELL--IRAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDE--DGQLDLEDILVAID---DKPKLVFLCSPNNPT  155 (346)
T ss_pred             HHHHH--HHHhcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCC--CCCCCHHHHHHhcC---CCCCEEEEeCCCCCC
Confidence            99887  344467999999999999999989999999999999843  36799999999765   567788889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (467)
                      |.+++.+++.++++.++ +|+++|+|++|.++..+.   .  .. ......+++++++|+||.+|++|+|+||++   .+
T Consensus       156 G~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~---~--~~-~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~---~~  225 (346)
T TIGR01141       156 GNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEP---S--TL-PLLAEYPNLIVLRTLSKAFGLAGLRIGYAI---AN  225 (346)
T ss_pred             CCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCc---c--HH-HHHhhCCCEEEEehhhHhhhchhhhceeee---cC
Confidence            99999999999988887 799999999999776431   1  12 222334578999999999999999999995   67


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CC
Q 012238          323 SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KS  401 (467)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~-g~  401 (467)
                      +++++.            ++.....  .+.+.++|.++..++++..       ++++.+++++++++.+.+.|+ ++ | 
T Consensus       226 ~~~~~~------------~~~~~~~--~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~l~~~L~-~~~g-  282 (346)
T TIGR01141       226 AEIIDA------------LNKVRAP--FNLSRLAQAAAIAALRDDD-------FIEKTVEEINAERERLYDGLK-KLPG-  282 (346)
T ss_pred             HHHHHH------------HHhccCC--CCCCHHHHHHHHHHhCCHH-------HHHHHHHHHHHHHHHHHHHHH-hcCC-
Confidence            777776            6554433  3456778888888887642       256788889999999999998 76 4 


Q ss_pred             CCCcccccCCcceEEecCCC---HHHHHHHHHcccEEEeCC-------C--eEEeccCChhhHHHHHHHHH
Q 012238          402 GKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKD-------G--RISLAGLSLAKCEYLADAII  460 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~g-------g--Ris~~~~~~~~i~~~~~~l~  460 (467)
                         +++. +.+|+|+|+.+.   .++.+.|. ++||.+.+|       +  |||++  +++++++++++|+
T Consensus       283 ---~~~~-~~~g~~~~~~~~~~~~~~~~~L~-~~gI~v~~g~~f~~~~~~iRls~~--~~~~i~~~~~~l~  346 (346)
T TIGR01141       283 ---LEVY-PSDANFVLIRFPRDADALFEALL-EKGIIVRDLNSYPGLPNCLRITVG--TREENDRFLAALR  346 (346)
T ss_pred             ---CEEC-CCcCCEEEEecCCCHHHHHHHHH-HCCeEEEeCCCcCCCCCeEEEecC--CHHHHHHHHHHhC
Confidence               5544 445778888653   34455555 569999886       2  99987  5789999888763

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=1.9e-36  Score=301.92  Aligned_cols=325  Identities=17%  Similarity=0.188  Sum_probs=240.6

Q ss_pred             ccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc
Q 012238           70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE  149 (467)
Q Consensus        70 i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~  149 (467)
                      +....+++..+ ..++|+|+.|++    ..++ ++.+++++.+.+..  ...|++. ..+++|+++|+++..      ++
T Consensus        22 ~~~~~~~~~~~-~~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~--~~~y~~~-~~~~lr~~ia~~~~~------~~   86 (361)
T PRK00950         22 KEEIAREYGID-PESIIKLGSNEN----PLGP-SPKAVEAIEKELSK--IHRYPEP-DAPELREALSKYTGV------PV   86 (361)
T ss_pred             HHHHHHHhCCC-ccceEEccCCCC----CCCC-CHHHHHHHHHHHHh--hcCCCCC-CHHHHHHHHHHHhCC------CH
Confidence            33344444422 237999999976    4443 67778887776543  2567554 459999999999742      36


Q ss_pred             CceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCC
Q 012238          150 QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (467)
Q Consensus       150 ~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (467)
                      ++|++ .++|+++++.++  +...+.+||+|+++.|+|+.|...++..|++++.++.  +.++++|++.+++.+.   .+
T Consensus        87 ~~i~~-~~~Ga~~~i~~~--~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~l~~~~~---~~  158 (361)
T PRK00950         87 ENIIV-GGDGMDEVIDTL--MRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAKR--EEDFSLDVDSVLNAIT---EK  158 (361)
T ss_pred             HHEEE-eCCCHHHHHHHH--HHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeec--CCCCCcCHHHHHHHhc---cC
Confidence            77766 136778888886  3334569999999999999999999999999999985  4467899999999886   46


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC
Q 012238          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (467)
                      ++++++++||||||.+++.+++.+|   |+++|+++|+||+|.++...    +   ...+....+++++++||||.+|+|
T Consensus       159 ~~~v~~~~p~nptG~~~~~~~l~~l---~~~~~~~li~De~y~~~~~~----~---~~~~~~~~~~vi~~~S~SK~~g~~  228 (361)
T PRK00950        159 TKVIFLCTPNNPTGNLIPEEDIRKI---LESTDALVFVDEAYVEFAEY----D---YTPLALEYDNLIIGRTFSKVFGLA  228 (361)
T ss_pred             CCEEEEeCCCCCCCCCcCHHHHHHH---HHHCCcEEEEECchhhhCcc----c---hHHHHHhcCCEEEEEeehHhhcCc
Confidence            6788889999999999999977766   66789999999999887621    1   122334456899999999999999


Q ss_pred             CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012238          310 AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ  389 (467)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~  389 (467)
                      |+|+||++   .++++++.            +.+.....  +.+.+.|.++..+|.+.+       .+++.+++++++|+
T Consensus       229 GlRiG~~~---~~~~~~~~------------~~~~~~~~--~~~~~~~~~a~~~l~~~~-------~~~~~~~~~~~~r~  284 (361)
T PRK00950        229 GLRIGYGF---VPEWLIDY------------YMRAKTPF--SLTRLSQAAAIAALSDKE-------YIEKSIEHGIKSRE  284 (361)
T ss_pred             hhhcchhc---CCHHHHHH------------HHHhcCCC--CCCHHHHHHHHHHhcCHH-------HHHHHHHHHHHHHH
Confidence            99999995   78888777            55554432  356778888888887542       24566777888888


Q ss_pred             HHHHHhhhccCCCCCcccccCCcceEEecCC---C-HHHHHHHHHcccEEEeCC------C----eEEeccCChhhHHHH
Q 012238          390 KLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---N-KAQSDNMTNKWHVYMTKD------G----RISLAGLSLAKCEYL  455 (467)
Q Consensus       390 ~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---~-~~~~~~ll~~~gI~v~~g------g----Ris~~~~~~~~i~~~  455 (467)
                      .+.+.|.        +.. .+.+++|+|+.+   + .++++.+.+ +||.+.+|      +    |||++  +.++++++
T Consensus       285 ~l~~~l~--------~~~-~~~~~~~i~~~~~~~~~~~~~~~l~~-~gv~v~~~~~f~~~~~~~lRis~~--~~~~~~~l  352 (361)
T PRK00950        285 YLYNELP--------FKV-YPSEANFVLVDVTPMTAKEFCEELLK-RGVIVRDCTSFRGLGDYYIRVSIG--TFEENERF  352 (361)
T ss_pred             HHHhhcC--------eeE-CCCcceEEEEECCCCCHHHHHHHHHH-CCEEEeeCCccCCCCCCeEEEECC--CHHHHHHH
Confidence            8877664        233 345678888854   3 344666655 69999875      1    99998  46799999


Q ss_pred             HHHHHHHH
Q 012238          456 ADAIIDSY  463 (467)
Q Consensus       456 ~~~l~~~l  463 (467)
                      +++|++++
T Consensus       353 ~~~L~~il  360 (361)
T PRK00950        353 LEILKEIV  360 (361)
T ss_pred             HHHHHHHh
Confidence            99999876

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=100.00  E-value=1.9e-36  Score=297.70  Aligned_cols=316  Identities=18%  Similarity=0.189  Sum_probs=239.7

Q ss_pred             CCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcc
Q 012238           67 PDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSV  146 (467)
Q Consensus        67 ~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~  146 (467)
                      +.+|..+..++. .+++++++|+.|.+    ..++  + +.+..   . .. ...|++..+ +++|+++++++.      
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~--~-~~~~~---~-~~-~~~y~~~~~-~~lr~~la~~~~------   61 (330)
T TIGR01140         2 GGNLRRAAARYG-IPPEDWLDFSTGIN----PLGP--P-VPPIP---A-SA-WARYPDPEY-DELRAAAAAYYG------   61 (330)
T ss_pred             CccHHHHHHHcC-CChhheeEccccCC----CCCC--C-hhhcc---h-HH-HhhCCCccH-HHHHHHHHHHhC------
Confidence            456666777665 34568999999986    3332  2 22211   1 11 266765555 999999999974      


Q ss_pred             cccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC
Q 012238          147 LKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA  226 (467)
Q Consensus       147 ~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~  226 (467)
                      +++++|++  |+|+++++.++   ...+.+| +|++++|+|..|...++..|++++.++         |++.+++.++  
T Consensus        62 ~~~~~i~~--t~G~~~~i~~~---~~~l~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~---------d~~~l~~~~~--  124 (330)
T TIGR01140        62 LPAASVLP--VNGAQEAIYLL---PRLLAPG-RVLVLAPTYSEYARAWRAAGHEVVELP---------DLDRLPAALE--  124 (330)
T ss_pred             CChhhEEE--CCCHHHHHHHH---HHHhCCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC---------CHHHHHhhcc--
Confidence            23789999  99999999996   3345677 799999999999999999999988875         7888888874  


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc
Q 012238          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (467)
Q Consensus       227 ~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (467)
                        +++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+.   .   ++..+.+..+++++++||||.+
T Consensus       125 --~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~---~---~~~~~~~~~~~~i~~~S~SK~~  196 (330)
T TIGR01140       125 --ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD---A---SLAPQAARFPGLVVLRSLTKFF  196 (330)
T ss_pred             --cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc---c---chhhHhccCCCEEEEEecchhh
Confidence              2447778999999999999999999999999999999999999988753   1   2222233457899999999999


Q ss_pred             ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012238          307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  386 (467)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~  386 (467)
                      |++|+|+||++   .++++++.            +......  .+++.++|.++..++++..+       .+..++++++
T Consensus       197 g~~G~R~G~i~---~~~~~~~~------------l~~~~~~--~~~s~~~q~~~~~~l~~~~~-------~~~~~~~~~~  252 (330)
T TIGR01140       197 GLAGLRLGFVV---AHPALLAR------------LREALGP--WTVNGPARAAGRAALADTAW-------QAATRARLAA  252 (330)
T ss_pred             cCchhhhhhee---CCHHHHHH------------HHhcCCC--CCchHHHHHHHHHHHhchHH-------HHHHHHHHHH
Confidence            99999999996   77777777            5544332  34567788898888876533       3456788999


Q ss_pred             HHHHHHHHhhhccCCCCCcccccCCcceEEecCC--CHHHHHHHHHcccEEEeCCC----------eEEeccCChhhHHH
Q 012238          387 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--NKAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEY  454 (467)
Q Consensus       387 ~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~i~~  454 (467)
                      +++.+.+.|+ +++.   ++. .+.+|+|+|+.+  +.++.+++++ +||.+.||.          ||++++ ..++ ++
T Consensus       253 ~~~~l~~~L~-~~~~---~~~-~~~~~~f~~~~~~~~~~l~~~l~~-~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~-~~  324 (330)
T TIGR01140       253 ERARLAALLA-RLGG---LEV-VGGTALFLLVRTPDAAALHEALAR-RGILIRDFDNFPGLDPRYLRFALPT-DEEN-DR  324 (330)
T ss_pred             HHHHHHHHHH-hCCC---ceE-CCCCCeEEEEEcCCHHHHHHHHHH-CCEEEEECCCCCCCCCCEEEEEecC-HHHH-HH
Confidence            9999999999 7762   343 355789999876  3455667766 699999971          999987 4444 77


Q ss_pred             HHHHH
Q 012238          455 LADAI  459 (467)
Q Consensus       455 ~~~~l  459 (467)
                      ++++|
T Consensus       325 ~~~~l  329 (330)
T TIGR01140       325 LEEAL  329 (330)
T ss_pred             HHHhh
Confidence            77765

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=100.00  E-value=4.4e-36  Score=284.02  Aligned_cols=321  Identities=17%  Similarity=0.137  Sum_probs=256.9

Q ss_pred             CCcCCCCcchHHHHHHHHHHHh-CCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhC
Q 012238          119 NKEYLPIEGLAAFNKVTAELLF-GADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA  197 (467)
Q Consensus       119 ~~~Y~~~~G~~~lr~aia~~l~-~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~  197 (467)
                      ..+|++..|.++|+.-+.++.. ....+....=.|++  |+|.|.+++.+  +...+.+||.|+|..++|+.....++..
T Consensus        93 alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiii--t~G~t~~l~~~--l~~~~N~gd~vlie~~ty~~AL~s~~a~  168 (472)
T KOG0634|consen   93 ALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIII--TNGNTDGLFKV--LRTLINRGDHVLIEEYTYPSALQSMEAL  168 (472)
T ss_pred             hhccccccCcHHHHHHHHHhccccccCCCCCCceEEE--ecCCchHHHHH--HHHhhcCCCceEEecccchHHHHhcccc
Confidence            4789999999999999999743 22223333337888  99999999998  4446889999999999999999999999


Q ss_pred             CCCeEEeeeecCCCCCCChhhHHHHHHcC-------CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012238          198 RVPWSEYRYYDPKTVGLDFEGMIADIKAA-------PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA  270 (467)
Q Consensus       198 G~~~~~v~~~~~~~~~~d~~~l~~~l~~~-------~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Dea  270 (467)
                      |+++++|+++   ..++++|.|++.+...       +...+++.|++.|||||..++.+..++|.++|++|+++||+||.
T Consensus       169 gv~~ipv~md---~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdp  245 (472)
T KOG0634|consen  169 GVKIIPVKMD---QDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDP  245 (472)
T ss_pred             CceEEecccc---CCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCc
Confidence            9999999884   3579999999988763       23568999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC------CCChhHHHHHH----------hcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhH
Q 012238          271 YQGFASGSL------DNDASSVRLFA----------TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAV  334 (467)
Q Consensus       271 y~~~~~~~~------~~~~~~~~~~~----------~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~  334 (467)
                      |.-+.++..      +....+.+.+.          +...+||-..||||.++ ||+|+||+.   +++.++++      
T Consensus       246 Yy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-PGlRlG~it---~~~~~l~r------  315 (472)
T KOG0634|consen  246 YYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRLGWIT---GNSLFLKR------  315 (472)
T ss_pred             cceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-CcceeEEee---cCHHHHHH------
Confidence            988877621      11112212222          22359999999999998 999999994   88888887      


Q ss_pred             HHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC-cccccCCcc
Q 012238          335 IQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD-WSFILRQIG  413 (467)
Q Consensus       335 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~-~~~~~~~~g  413 (467)
                            .-......+.+++.+.|.++.+.|....- +-|.+.+.+.+..|..+|+.+..+|. +. +|.. +++.+|.+|
T Consensus       316 ------il~~ae~~t~~pSg~sq~iv~a~l~~wgq-eG~~~wi~~l~~~Yt~Rrn~~l~Al~-ky-lp~~~~~~~~P~aG  386 (472)
T KOG0634|consen  316 ------ILDLAEVATSGPSGFSQGIVYAMLKRWGQ-EGFLRWIQHLRSSYTERRNALLSALD-KY-LPKSVCEYHPPKAG  386 (472)
T ss_pred             ------HhhhcceeecCcccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCeeEEecCCcc
Confidence                  55555556778999999999888765432 33556688999999999999999998 43 2333 678899999


Q ss_pred             eEEecCCC-------------HHHHHHHHHcccEEEeCCC---------------eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          414 MFSFTGLN-------------KAQSDNMTNKWHVYMTKDG---------------RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       414 ~f~~~~l~-------------~~~~~~ll~~~gI~v~~gg---------------Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                      +|+|+.++             .+.+...+.++||.+.+|.               |++|+..+.++++++++++..++++
T Consensus       387 mFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike  466 (472)
T KOG0634|consen  387 MFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKE  466 (472)
T ss_pred             eEEEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHH
Confidence            99998663             2345666667899999982               9999988889999999999998875

>PRK08354 putative aminotransferase; Provisional

Probab=100.00  E-value=8.7e-36  Score=290.58  Aligned_cols=292  Identities=13%  Similarity=0.181  Sum_probs=213.2

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      .++|+|+.|++    ..+  |+.+.+++.+....  ...|+.   ...+|+++++++.         ++|++  |+|+++
T Consensus         8 ~~~i~l~~~~n----p~~--p~~~~~a~~~~~~~--~~~yp~---~~~l~~~ia~~~~---------~~I~v--t~G~~~   65 (311)
T PRK08354          8 EGLIDFSASVN----PYP--PEWLDEMFERAKEI--SGRYTY---YEWLEEEFSKLFG---------EPIVI--TAGITE   65 (311)
T ss_pred             cceeEecCCCC----CCC--CHHHHHHHHHHHHH--hhcCCC---hHHHHHHHHHHHC---------CCEEE--CCCHHH
Confidence            37899999865    333  56788888776543  246743   4679999999963         37888  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      ++.++   +..+.+||+|++++|+|+.|..+++..|++++.+        .+|++.+++.++    +++++++++|||||
T Consensus        66 al~~~---~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~--------~~d~~~l~~~~~----~~~~vi~~~P~NPT  130 (311)
T PRK08354         66 ALYLI---GILALRDRKVIIPRHTYGEYERVARFFAARIIKG--------PNDPEKLEELVE----RNSVVFFCNPNNPD  130 (311)
T ss_pred             HHHHH---HHhhCCCCeEEEeCCCcHHHHHHHHHcCCEEeec--------CCCHHHHHHhhc----CCCEEEEecCCCCC
Confidence            99986   2344599999999999999999999999998764        257888888775    34578889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (467)
                      |.+++.+++++|+++|+++|+++|+||+|.+|.++.   ..  .     ..+++++++||||+|++||+|+||++   + 
T Consensus       131 G~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~---~~--~-----~~~~vi~~~S~SK~~~l~GlRiG~~v---~-  196 (311)
T PRK08354        131 GKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKP---ES--P-----EGENIIKLRTFTKSYGLPGIRVGYVK---G-  196 (311)
T ss_pred             CCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccc---cc--c-----CCCcEEEEeccHhhcCCccceeeeee---e-
Confidence            999999999999999999999999999999998753   11  1     14689999999999999999999996   3 


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238          323 SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  402 (467)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~  402 (467)
                        .++.            ++......  ..+...+.++..++.+ .+     +++.+.++.+++.++.+.+.+       
T Consensus       197 --~~~~------------l~~~~~~~--~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~l~~~l-------  247 (311)
T PRK08354        197 --FEEA------------FRSVRMPW--SIGSTGYAFLEFLIED-DF-----EHLRKTMPLIWREKERFEKAL-------  247 (311)
T ss_pred             --hHHH------------HHHcCCCc--cCCHHHHHHHHHHHHh-HH-----HHHHHHHHHHHHHHHHHHHhc-------
Confidence              3444            44443332  3344556666655553 21     223444555555555443322       


Q ss_pred             CCcccccCCcceEEecCC-C-HHHHHHHHHcccEEEeCCC--------eEEeccCChhhHHHHHHHHHHH
Q 012238          403 KDWSFILRQIGMFSFTGL-N-KAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       403 ~~~~~~~~~~g~f~~~~l-~-~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                          ..+++++||++ ++ + .++++.+ .++||.+.||.        ||+++.  +++.++++++|+++
T Consensus       248 ----~~~~~~~~~~~-~~~~~~~~~~~l-~~~gv~v~~g~~f~~~~~iRi~~~~--~~~~~~l~~al~~~  309 (311)
T PRK08354        248 ----YVKSDANFFIK-DVGDAEKFVEFL-KRNGILVRDCTSFGLPGYIRFSVRD--REENEKLIRALREW  309 (311)
T ss_pred             ----CCCCCCcEEEE-ECCCHHHHHHHH-HHCCeEEEecccCCCCCeEEEEeCC--HHHHHHHHHHHHHh
Confidence                13567776664 44 3 3445555 55699999982        999985  46778888888765

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=100.00  E-value=1.1e-31  Score=272.61  Aligned_cols=338  Identities=11%  Similarity=0.066  Sum_probs=243.4

Q ss_pred             CCCCCcEEecCcccC-CCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           80 DTDEKKLNLGVGAYR-TEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        80 ~~~~~~i~l~~G~~~-d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      +.+.++|+|++|+|. |-.. |.....+.++..+++..+. ..|.+..|.++||+++++++..        +++++  |.
T Consensus        33 ~~g~~~~~L~~g~p~~D~~t-ds~t~a~~~a~~~a~~~g~-~~Y~~~~g~~~Lreaia~~~~~--------~~vv~--t~  100 (460)
T PRK13238         33 EAGYNPFLLKSEDVFIDLLT-DSGTGAMSDRQWAAMMRGD-EAYAGSRSYYRLEDAVKDIFGY--------PYTIP--TH  100 (460)
T ss_pred             HcCCCEEeCCCCCCCCCCCC-CCCchhhhHHHHHHHHhCC-cccCCCCCHHHHHHHHHHHhCC--------CcEEE--CC
Confidence            345689999999983 2211 1112256777777665554 7899999999999999999743        36777  99


Q ss_pred             CchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecC------CCC--CCChhhHHHHHHcCC-CC
Q 012238          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP------KTV--GLDFEGMIADIKAAP-GG  229 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~------~~~--~~d~~~l~~~l~~~~-~~  229 (467)
                      ||++|+.++  +...+.||| |++++|.|..|...++..|++++.+++++.      +.|  .+|++.|++.+++.. ++
T Consensus       101 ggt~A~~~~--~~all~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~  177 (460)
T PRK13238        101 QGRAAEQIL--FPVLIKKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAEN  177 (460)
T ss_pred             CHHHHHHHH--HHHhCCCCC-EEccCCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCc
Confidence            999999998  555688999 999999999999999999999999998531      233  499999999997532 46


Q ss_pred             cEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCC--CCCCCCC---CCChhHHHHHHhcCCeEEEEecCc
Q 012238          230 SFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQ--GFASGSL---DNDASSVRLFATRGMELLVAQSYS  303 (467)
Q Consensus       230 ~~~i~i~~p~NPTG-~~~~~~~l~~l~~~~~~~~~~li~Deay~--~~~~~~~---~~~~~~~~~~~~~~~~~i~~~S~S  303 (467)
                      ++++++++|||||| .+++.+++++|.++|++||++||+|+++.  ...+...   .....++..+      +..++|++
T Consensus       178 tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i------~~~~~s~~  251 (460)
T PRK13238        178 VPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEI------AREMFSYA  251 (460)
T ss_pred             eeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHH------hhhhcccC
Confidence            89999999999997 99999999999999999999999999652  2222110   0111122122      34457888


Q ss_pred             cCcccCCCccc-----eEEEecCCHHHHhhhhhhhHHHHHHHHHhhc----cC-ccCCCchHHHHHHHHHhCChhhHHHH
Q 012238          304 KNLGLYAERIG-----AMNVVCSSSDLAARCCEVAVIQVKSQLKRLA----RP-MYSNPPVHGARIVANVVGNPALFDEW  373 (467)
Q Consensus       304 K~~~~~G~RiG-----~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~----~~-~~~~~~~~~~~~~~~~L~~~~~~~~~  373 (467)
                      |.+.+.|||+|     +++ ++.++++++.            ++...    .. .+.+.+...|.+++..|.+ ...+.|
T Consensus       252 D~~~~Sg~K~g~~~~GG~i-~~~d~~l~~~------------~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e-~~~~~~  317 (460)
T PRK13238        252 DGLTMSAKKDAMVNIGGLL-CFRDEDLFTE------------CRTLCILYEGFPTYGGLAGRDMEALAVGLYE-GMDEDY  317 (460)
T ss_pred             cEEEEecccCCCCcceeEE-EcChHHHHHH------------hhhcccccCCcccccCcHHHHHHHHHhhHHH-hhChHH
Confidence            88888888874     443 2344677766            54442    11 2334444456666655542 111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-------------CHHHHHHHHHcccEEEeCCC
Q 012238          374 KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-------------NKAQSDNMTNKWHVYMTKDG  440 (467)
Q Consensus       374 ~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-------------~~~~~~~ll~~~gI~v~~gg  440 (467)
                         ++.+    .+++++|.+.|. +.|    +.+..|.||+|+|++.             +.+++.+|+++.||.+.|+|
T Consensus       318 ---~~~~----~~~~~~l~~~L~-~~G----~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~  385 (460)
T PRK13238        318 ---LAYR----IGQVEYLGEGLE-EAG----VPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIG  385 (460)
T ss_pred             ---HHHH----HHHHHHHHHHHH-HCC----CCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeeccc
Confidence               2222    235799999998 877    5788899999999853             24578899999999998862


Q ss_pred             ---------------------eEEecc--CChhhHHHHHHHHHHHHH
Q 012238          441 ---------------------RISLAG--LSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       441 ---------------------Ris~~~--~~~~~i~~~~~~l~~~l~  464 (467)
                                           |+++..  .+.+++++++++|+++.+
T Consensus       386 ~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~  432 (460)
T PRK13238        386 SLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKE  432 (460)
T ss_pred             ceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence                                 888864  478999999999998865

>cd00609 AAT_like Aspartate aminotransferase family

Probab=100.00  E-value=1.7e-31  Score=264.54  Aligned_cols=333  Identities=20%  Similarity=0.226  Sum_probs=251.2

Q ss_pred             EEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHH
Q 012238           86 LNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (467)
Q Consensus        86 i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~  165 (467)
                      |||+.|.+    .+.. .+.+..++...........|.+..|..++++.+++++....+....++++++  ++|+++++.
T Consensus         1 ~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~--~~~~t~a~~   73 (350)
T cd00609           1 IDLSIGEP----DFPP-PPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVV--TNGAQEALS   73 (350)
T ss_pred             CCCCCCCC----CCCC-CHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEE--ecCcHHHHH
Confidence            57888877    3333 4444444433222223467888999999999999999876655555678888  999999999


Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCCh--hhHHHHHHcCCCCcEEEEeCCCCCCCC
Q 012238          166 LAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF--EGMIADIKAAPGGSFILLHGCAHNPTG  243 (467)
Q Consensus       166 l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~--~~l~~~l~~~~~~~~~i~i~~p~NPTG  243 (467)
                      .+  +.....+||+|+++.|+|..+...++..|.+++.++..+  .+..+.  +.++....   ++++++++++++||||
T Consensus        74 ~~--~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~---~~~~~v~i~~~~~~tG  146 (350)
T cd00609          74 LL--LRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDE--EGGFLLDLELLEAAKT---PKTKLLYLNNPNNPTG  146 (350)
T ss_pred             HH--HHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEEeccc--ccCCccCHHHHHhhcC---ccceEEEEECCCCCCC
Confidence            87  333456899999999999999999999999999999853  333443  44444333   5677888888999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCH
Q 012238          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (467)
Q Consensus       244 ~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~  323 (467)
                      .+++.+++++|+++|+++|+++|+|++|.++.+......   ..........+++++|++|.++.+|.|+||++   .++
T Consensus       147 ~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~---~~~  220 (350)
T cd00609         147 AVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPP---ALALLDAYERVIVLRSFSKTFGLPGLRIGYLI---APP  220 (350)
T ss_pred             cccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccc---cccCcCccCcEEEEeecccccCCcccceEEEe---cCH
Confidence            999999999999999999999999999998876532111   00112334578999999999999999999996   455


Q ss_pred             -HHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238          324 -DLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  402 (467)
Q Consensus       324 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~  402 (467)
                       ++.+.            ++......+.+++...+.++..+|....      +.+++.+++++++++.+.+.|+ +.+. 
T Consensus       221 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~-~~~~-  280 (350)
T cd00609         221 EELLER------------LKKLLPYTTSGPSTLSQAAAAAALDDGE------EHLEELRERYRRRRDALLEALK-ELGP-  280 (350)
T ss_pred             HHHHHH------------HHHHHHhcccCCChHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHH-hcCC-
Confidence             67776            5544444456778888888887777542      3367788889999999999999 7763 


Q ss_pred             CCcccccCCcceEEecCCC----HHHHHHHHHcccEEEeCC------C----eEEeccCChhhHHHHHHHHHH
Q 012238          403 KDWSFILRQIGMFSFTGLN----KAQSDNMTNKWHVYMTKD------G----RISLAGLSLAKCEYLADAIID  461 (467)
Q Consensus       403 ~~~~~~~~~~g~f~~~~l~----~~~~~~ll~~~gI~v~~g------g----Ris~~~~~~~~i~~~~~~l~~  461 (467)
                        +....+.+|+|+|+.+.    .+.+.++++++||.+.++      +    ||+++.. ++++++++++|++
T Consensus       281 --~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~-~~~i~~~~~al~~  350 (350)
T cd00609         281 --LVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP-EEELEEALERLAE  350 (350)
T ss_pred             --ccccCCCccEEEEEecCCCChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC-HHHHHHHHHHhhC
Confidence              22245677889988653    456778888889999886      3    9999985 8999999998863

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=6.8e-31  Score=237.21  Aligned_cols=361  Identities=17%  Similarity=0.142  Sum_probs=258.6

Q ss_pred             ccchHHHhhcC-CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC----CCCcCCCCcchHHHHHHHHHHHhCCCC
Q 012238           70 ILGVSEAFKAD-TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG----ENKEYLPIEGLAAFNKVTAELLFGADN  144 (467)
Q Consensus        70 i~~~~~~~~~~-~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~----~~~~Y~~~~G~~~lr~aia~~l~~~~~  144 (467)
                      |.+++++++.. ..++.|.|+-|.|   ...|.+.+-..+...+++..+    ...+|..++|...|.+++++.+.+.+|
T Consensus        16 i~~lMdDl~d~Lrt~g~imLggGNP---a~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~yg   92 (417)
T COG3977          16 ITQLMDDLNDGLRTPGAIMLGGGNP---ARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYG   92 (417)
T ss_pred             HHHHHHHHHhhccCCCceeeCCCCc---ccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhC
Confidence            55666666522 3457999999987   123333344444445554332    236799999999999999999999999


Q ss_pred             cccccCceeeeecCCchhHHHHHHHHHHHhC-CCC--EEEEc-CCCCcchHHHHhhCCCCeEE---eeeecCC--CCCCC
Q 012238          145 SVLKEQRVATVQGLSGTGSLRLAAALIERYF-PGA--KVLIS-SPTWGNHKNIFNDARVPWSE---YRYYDPK--TVGLD  215 (467)
Q Consensus       145 ~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~-~gd--~Vlv~-~P~y~~~~~~~~~~G~~~~~---v~~~~~~--~~~~d  215 (467)
                      +.++++||.+  |+|++.+++-++.+++... .|+  +|+.| .|.|.+|..+.-.-..=|..   ++..+..  .+.+|
T Consensus        93 wnit~~NIal--TnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~iel~~~g~FKY~vD  170 (417)
T COG3977          93 WNITAQNIAL--TNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKPNIELLPAGQFKYHVD  170 (417)
T ss_pred             CCCccceeee--cCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeeccCCcccccccceeeccC
Confidence            9999999999  9999999998755554333 454  56665 59998887653211110110   1121122  34567


Q ss_pred             hhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012238          216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (467)
Q Consensus       216 ~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~  295 (467)
                      ++.+.-  .   +.+-+++++-|.||||.+++.+|+.+|..++++||+.+|+|.+|.---.+-.-.|..+     -..++
T Consensus       171 F~~l~i--~---e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~-----~w~~N  240 (417)
T COG3977         171 FEHLHI--G---ESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATP-----LWNEN  240 (417)
T ss_pred             HHHccc--c---cccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccc-----cCCCC
Confidence            777643  2   5677888899999999999999999999999999999999999863322111011111     24579


Q ss_pred             EEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH
Q 012238          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA  375 (467)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  375 (467)
                      ++.+.|+|| +|+||.|+|-++   ++++++..            +..........+..+++++++.+++.+++.+.-+ 
T Consensus       241 iilC~SLSK-~GLPG~R~GIiI---ane~viqa------------itnmn~iisLap~~~G~Aia~~mie~gdl~rlse-  303 (417)
T COG3977         241 IILCMSLSK-LGLPGSRCGIII---ANEKVIQA------------ITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSE-  303 (417)
T ss_pred             EEEEeehhh-cCCCCcceeEEE---ccHHHHHH------------HHhccceeeecCCCccHHHHHHHhhcchHHHHHH-
Confidence            999999999 689999999996   88988887            6666555556788889999999999887754321 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEec-----CCCHHHHHHHHHcccEEEeCCC----------
Q 012238          376 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT-----GLNKAQSDNMTNKWHVYMTKDG----------  440 (467)
Q Consensus       376 ~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~-----~l~~~~~~~ll~~~gI~v~~gg----------  440 (467)
                        .-++..|+++.+...+.|+..++- ..|..++|+|..|+|+     .++.+.+-+.|++.||.++||.          
T Consensus       304 --qVIrPFY~~~~q~~~~~l~~~lp~-~~~~iHkpEGAIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ew  380 (417)
T COG3977         304 --QVIRPFYRNRVQTTIAILRRYLPE-YRCLIHKPEGAIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEW  380 (417)
T ss_pred             --HhhhHHHHHHHHHHHHHHHHhcCc-cceeeecCCcceeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCC
Confidence              345667777777777777633332 2377889999999886     3355555555666799999992          


Q ss_pred             -------eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          441 -------RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 -------Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                             |+|+.. +++.++..+++|.+.+++.
T Consensus       381 pH~hqC~Rmn~~~-~~~~ie~Gva~lae~ve~~  412 (417)
T COG3977         381 PHTHQCMRMNYVP-EPEKIEKGVAILAEEVERA  412 (417)
T ss_pred             CCccceEEEecCC-CHHHHHHHHHHHHHHHHHH
Confidence                   999998 8899999999999888753

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.97  E-value=1.4e-28  Score=229.55  Aligned_cols=322  Identities=18%  Similarity=0.162  Sum_probs=249.0

Q ss_pred             CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhC
Q 012238          118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA  197 (467)
Q Consensus       118 ~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~  197 (467)
                      ..-.|....|++-+|+.+|+++.+++|.+.+|++|++  |.|++.|+..+..++ .-.+.+.|++|-|.|+-|...+..+
T Consensus       105 s~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~L--T~GAS~ai~~il~l~-~~~~~~GvliPiPQYPLYsAti~l~  181 (475)
T KOG0258|consen  105 SLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFL--TTGASPAIRSILSLL-IAGKKTGVLIPIPQYPLYSATISLL  181 (475)
T ss_pred             cccccccccCChhHHHHHHHHHHhccCCCCCHHHeee--cCCCcHHHHHHHHHH-hcCCCCceEeecCCCchhHHHHHHh
Confidence            4467999999999999999999999998899999999  999999999974333 1127789999999999999999999


Q ss_pred             CCCeEEeeeecCCCCCCChhhHHHHHHcC--CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012238          198 RVPWSEYRYYDPKTVGLDFEGMIADIKAA--PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA  275 (467)
Q Consensus       198 G~~~~~v~~~~~~~~~~d~~~l~~~l~~~--~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~  275 (467)
                      |...+.|-++++.+|.+|.++|++.++++  .-+.+++++.||.||||.+++++.+++|+.+|.+++++++.||+|++-.
T Consensus       182 ~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nv  261 (475)
T KOG0258|consen  182 GGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNV  261 (475)
T ss_pred             CCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhc
Confidence            99999999988899999999999998764  3466788889999999999999999999999999999999999999998


Q ss_pred             CCCCCCChhHHHHHH-hcC------CeEEEEecCccCc-ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC
Q 012238          276 SGSLDNDASSVRLFA-TRG------MELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP  347 (467)
Q Consensus       276 ~~~~~~~~~~~~~~~-~~~------~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~  347 (467)
                      |.+ +...++.+..+ +.+      ..++.++|.||.+ |=.|.|-||+-++.-+++..+.            +.++...
T Consensus       262 y~~-~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~q------------i~Kl~si  328 (475)
T KOG0258|consen  262 YTT-GSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQ------------IKKLASI  328 (475)
T ss_pred             cCC-CcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHH------------HHHHHhh
Confidence            863 12333433322 221      2577888999977 4489999999754445554443            4444332


Q ss_pred             ccCCCchHHHHHHHHHhCCh----hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC---
Q 012238          348 MYSNPPVHGARIVANVVGNP----ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---  420 (467)
Q Consensus       348 ~~~~~~~~~~~~~~~~L~~~----~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---  420 (467)
                       ..+++..+|..+-...+.+    .-++.|..+.+.+.+.++++...+.+.+. ++.   ++.+.+++|.||+|..+   
T Consensus       329 -~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~n-s~~---gi~cn~~qGAMY~fP~i~lP  403 (475)
T KOG0258|consen  329 -KLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFN-SLE---GISCNPVQGAMYLFPQISLP  403 (475)
T ss_pred             -hhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHh-hcC---ceeeccCccceeecccccCC
Confidence             3345555666665555422    23455677778888999999999999998 764   26889999999999743   


Q ss_pred             -------------CHHH-HHHHHHcccEEEeCC-------C----eEEeccCChhhHHHHHHHHHHHHH
Q 012238          421 -------------NKAQ-SDNMTNKWHVYMTKD-------G----RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       421 -------------~~~~-~~~ll~~~gI~v~~g-------g----Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                                   ..+| +.+||+..||.++||       |    |.+|-.  .. + ..++.+++.-+
T Consensus       404 ~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp--~~-~-~~i~~~~~fH~  468 (475)
T KOG0258|consen  404 PKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILP--PG-L-EIIEKFKKFHA  468 (475)
T ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecC--ch-h-HHHHHHHHHHH
Confidence                         2345 789999999999999       2    777654  22 3 55566555433

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.96  E-value=1.5e-27  Score=239.09  Aligned_cols=342  Identities=12%  Similarity=0.095  Sum_probs=233.7

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      .+-+++.|..|+++-.-..+.....+.++....+..+. ..|.+..|.++|++++++++..        +++++  |+||
T Consensus         9 ~g~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~~gd-~~Y~~~~g~~~Leeaia~~~g~--------~~vv~--t~~G   77 (431)
T cd00617           9 AGYNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMMLGD-EAYAGSKSFYDLEDAVQDLFGF--------KHIIP--THQG   77 (431)
T ss_pred             cCCCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHhCC-CccCCCCCHHHHHHHHHHHHCC--------CeEEE--cCCH
Confidence            44578999999873211111111344444444444443 5699999999999999999744        36777  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCC--------CCCCChhhHHHHHHcC-CCCcE
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK--------TVGLDFEGMIADIKAA-PGGSF  231 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~--------~~~~d~~~l~~~l~~~-~~~~~  231 (467)
                      ++|+.++  +...+.|||.| +++|+|..+...+...|++++.++++++.        .+.+|++.+++.+++. ..+++
T Consensus        78 t~Al~la--~~al~~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~  154 (431)
T cd00617          78 RGAENIL--FSILLKPGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIP  154 (431)
T ss_pred             HHHHHHH--HHHhCCCCCEE-ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCcc
Confidence            9999998  55568899987 69999999999999999999999986432        3459999999999853 23478


Q ss_pred             EEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEeccCCC--CCCC---CCCCChhHHHHHHhcCCeEEEEecCccC
Q 012238          232 ILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQG--FASG---SLDNDASSVRLFATRGMELLVAQSYSKN  305 (467)
Q Consensus       232 ~i~i~~p~NPT-G~~~~~~~l~~l~~~~~~~~~~li~Deay~~--~~~~---~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (467)
                      ++++++||||+ |..++.+++++|.++|++||++||+|++...  ..+-   .......++..      .++.++|++|.
T Consensus       155 ~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~e------i~~e~~s~sd~  228 (431)
T cd00617         155 YIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAE------IAREMFSYADG  228 (431)
T ss_pred             EEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHH------HHHHhhccCCE
Confidence            89999999998 9999999999999999999999999999321  1110   00011112221      23457788888


Q ss_pred             cccCCCc------cceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc-cCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          306 LGLYAER------IGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       306 ~~~~G~R------iG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                      +.+.|+|      .||++  +.+++++++        ++.......... +.+.+.....+++..|.+..      + .+
T Consensus       229 ~~mS~~K~~~~~~GG~i~--~~d~~l~~~--------~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~------~-~~  291 (431)
T cd00617         229 CTMSAKKDGLVNIGGFLA--LRDDELYEE--------ARQRVVLYEGFVTYGGMAGRDMEALAQGLREAV------E-ED  291 (431)
T ss_pred             EEEEeecCCCCccceEEE--eCcHHHHHH--------HHHhccccCCccccccccHHHHHHHHHHHHhcc------c-HH
Confidence            8888888      45774  455568777        332110111111 12222222233332443210      0 12


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-------------CHHHHHHHHHcccEEEeCC------
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-------------NKAQSDNMTNKWHVYMTKD------  439 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-------------~~~~~~~ll~~~gI~v~~g------  439 (467)
                      ...++++ +|++|.+.|+ +.|    |.+..|.||+|+|++.             +.+++.+|+++.||.+..-      
T Consensus       292 ~l~~~~~-~r~~l~~~L~-~~G----~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~  365 (431)
T cd00617         292 YLRHRVE-QVRYLGDRLD-EAG----VPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAG  365 (431)
T ss_pred             HHHHHHH-HHHHHHHHHH-HCC----CCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecc
Confidence            2333443 5688999999 888    5778899999999853             2355778999999987541      


Q ss_pred             -----C----------eEEecc--CChhhHHHHHHHHHHHHHh
Q 012238          440 -----G----------RISLAG--LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       440 -----g----------Ris~~~--~~~~~i~~~~~~l~~~l~~  465 (467)
                           |          ||++..  .+.+++++++++|.+++++
T Consensus       366 ~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~  408 (431)
T cd00617         366 RDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYER  408 (431)
T ss_pred             cCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhh
Confidence                 1          888753  4789999999999998864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK10534 L-threonine aldolase; Provisional

Probab=99.96  E-value=6.1e-28  Score=237.95  Aligned_cols=316  Identities=13%  Similarity=0.032  Sum_probs=210.9

Q ss_pred             EEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHH
Q 012238           86 LNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (467)
Q Consensus        86 i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~  165 (467)
                      |||+..+.      |.++|.+++++.+... + ...|+|..+..+|+++++++++..        .+++  +.||++++.
T Consensus         2 ~~~~~~~~------~~p~~~~~~a~~~~~~-~-~~~Y~~~~~~~~L~~~la~~~g~~--------~~~v--~~~g~~a~~   63 (333)
T PRK10534          2 IDLRSDTV------TRPSRAMLEAMMAAPV-G-DDVYGDDPTVNALQDYAAELSGKE--------AALF--LPTGTQANL   63 (333)
T ss_pred             cccccccC------CCCCHHHHHHHHhccC-C-CcccCCCHHHHHHHHHHHHHhCCC--------eEEE--eCchHHHHH
Confidence            56665432      3347899999877543 3 367888889999999999995432        3345  688888877


Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCcc-hHHH-HhhCC-CCeEEeeeecCCCCCCChhhHHHHHHcCC---CCcEEEEeCCCC
Q 012238          166 LAAALIERYFPGAKVLISSPTWGN-HKNI-FNDAR-VPWSEYRYYDPKTVGLDFEGMIADIKAAP---GGSFILLHGCAH  239 (467)
Q Consensus       166 l~~~~l~~~~~gd~Vlv~~P~y~~-~~~~-~~~~G-~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~i~i~~p~  239 (467)
                      ++  ++..+.+||+|+++.|+|.. |... ....| ++++.++.  +.++.+|++.+++++.+..   .++++++++||+
T Consensus        64 ~~--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~  139 (333)
T PRK10534         64 VA--LLSHCERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDA--AADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH  139 (333)
T ss_pred             HH--HHHhcCCCCeeEEechhhhhHhcCCchHHhcCceEEeecC--CCCCCCCHHHHHHhhcccCcCcccceEEEEecCC
Confidence            76  44557799999999888753 4221 23333 57777776  3467899999999886310   157788888655


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccce-EEE
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA-MNV  318 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~-~~~  318 (467)
                        ||.+++.+++++|+++|+++++++++||+|..........   ....+....+.++  .||||.|+++   +|| +  
T Consensus       140 --~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~---~~~~~~~~~~~~~--~s~SK~~~~~---~G~~~--  207 (333)
T PRK10534        140 --NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGC---ELKEITQYCDSFT--ICLSKGLGTP---VGSLL--  207 (333)
T ss_pred             --CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCC---CHHHHHhcCCEEE--EEeEcCCCCc---ccceE--
Confidence              6999999999999999999999999999976221100001   1112222223333  4899998864   785 5  


Q ss_pred             ecCCHHHHhhhhhhhHHHHHHHHHhhccCccC--CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          319 VCSSSDLAARCCEVAVIQVKSQLKRLARPMYS--NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                       ++++++++.            +++.......  +.+...+.++...|.+          ..+..++.++.|+++.+.|+
T Consensus       208 -~~~~~~i~~------------~~~~~~~~~~~~~~~~~~~a~~~~~l~~----------~~~~~~~~~~~r~~l~~~L~  264 (333)
T PRK10534        208 -VGNRDYIKR------------ARRWRKMTGGGMRQAGILAAAGLYALKH----------NVARLQEDHDNAAWLAEQLR  264 (333)
T ss_pred             -EcCHHHHHH------------HHHHHHHhCCchhhHHHHHHHHHHHHHh----------hHHHHHHHHHHHHHHHHHHH
Confidence             488998887            5444433221  2223444444444421          11222234456789999999


Q ss_pred             hccCCCCCcccccCCcceEEecCCC---HHHHHHHHHcccEEEeCCC--eEEec-cCChhhHHHHHHHHHHHHH
Q 012238          397 AKDKSGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKDG--RISLA-GLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       397 ~~~g~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~gg--Ris~~-~~~~~~i~~~~~~l~~~l~  464 (467)
                       ++|    +++.++ .++|+|+.+.   .+.+.++++++||.+.++.  |++.. ..+++++++++++|++.+.
T Consensus       265 -~~g----~~~~~~-~~nfv~~~~~~~~~~~~~~~l~~~gi~v~~~~~~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        265 -EAG----ADVMRQ-DTNMLFVRVGEEQAAALGEYMRERNVLINASPIVRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             -hCC----CccCCC-CceEEEEECCchhHHHHHHHHHHcCeeecCCceEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence             877    466666 4778888653   3455667777899999986  88653 3488999999999997764

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.96  E-value=1.6e-26  Score=227.39  Aligned_cols=293  Identities=15%  Similarity=0.140  Sum_probs=210.2

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEE
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI  182 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv  182 (467)
                      .|.++++..+.++.-  .  ++..-..+|++.+|++++..      ++++++  ++||++++..+  +...+.|||+|++
T Consensus        35 ~~~~~~~~~~~~~~~--~--g~~~~~~~Le~~lA~~~g~~------~e~ilv--~~gg~~a~~~~--~~al~~~gd~Vli  100 (346)
T TIGR03576        35 GFKIDEEDLELLETY--V--GPAIFEEKVQELGREHLGGP------EEKILV--FNRTSSAILAT--ILALEPPGRKVVH  100 (346)
T ss_pred             ChhHHHHHHHHHHHh--c--CCHHHHHHHHHHHHHHcCCC------cceEEE--ECCHHHHHHHH--HHHhCCCCCEEEE
Confidence            566777766665431  1  23345678888888886432      689998  99999999997  5556779999997


Q ss_pred             c---CCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 012238          183 S---SPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ  259 (467)
Q Consensus       183 ~---~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~  259 (467)
                      +   .|+|..|...++..|++++.+         .|++.++. .    ++++++++ +++||+|.+++.+++++|+++|+
T Consensus       101 ~~~d~p~~~s~~~~~~l~ga~~~~~---------~~l~~l~~-~----~~~~lIii-tg~s~~G~v~~~~~L~~i~~la~  165 (346)
T TIGR03576       101 YLPEKPAHPSIPRSCKLAGAEYFES---------DELSELKK-I----DGTSLVVI-TGSTMDLKVVSEEDLKRVIKQAK  165 (346)
T ss_pred             CCCCCCCchhHHHHHHHcCCEEecc---------CCHHHHhh-C----cCceEEEE-ECCCCCCcccCHHHHHHHHHHHH
Confidence            5   478888988999999875322         23444322 1    34566666 45799999999999999999999


Q ss_pred             hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHH
Q 012238          260 EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKS  339 (467)
Q Consensus       260 ~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~  339 (467)
                      ++|+++|+||+|..+..+.....  +.   ...+.+ +++.||||  +++|+|+||++   +++++++.           
T Consensus       166 ~~~~~livDEAy~~~~~~~~~~~--~~---~~~~~d-ivv~s~SK--alaG~r~G~v~---~~~~li~~-----------  223 (346)
T TIGR03576       166 SKEAIVLVDDASGARVRRLYGQP--PA---LDLGAD-LVVTSTDK--LMDGPRGGLLA---GRKELVDK-----------  223 (346)
T ss_pred             HcCCEEEEECCccccccccCCCC--CH---HHcCCc-EEEeccch--hccccceEEEE---eCHHHHHH-----------
Confidence            99999999999987654311111  11   122233 66789999  67899999995   88888887           


Q ss_pred             HHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecC
Q 012238          340 QLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTG  419 (467)
Q Consensus       340 ~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~  419 (467)
                       +.+..+++..+.+...|.++..+|+...        .+..++.++++++.+.+.+. .++      +.++.++ |+|++
T Consensus       224 -l~~~~~~~~~s~~~~~~~aa~~aL~~~~--------~~~~~~~l~~r~~~~~~~l~-~~~------~~~~~~~-f~~~~  286 (346)
T TIGR03576       224 -IKSVGEQFGLEAQAPLLAAVVRALEEFE--------LSRIRDAFKRKEEVYLRLFD-KLN------VERTPTG-FVIKG  286 (346)
T ss_pred             -HHHhhcCcccCccHHHHHHHHHHHhhcc--------HHHHHHHHHHHHHHHHHHHH-hCC------CCcCCCe-EEEEe
Confidence             7666665444456667778877775421        23567788888888887776 543      3344555 78886


Q ss_pred             CC----HHHHHHHHHcccEEEeCC-------C--eEEeccCChh---hHHHHHHHHHHHHH
Q 012238          420 LN----KAQSDNMTNKWHVYMTKD-------G--RISLAGLSLA---KCEYLADAIIDSYH  464 (467)
Q Consensus       420 l~----~~~~~~ll~~~gI~v~~g-------g--Ris~~~~~~~---~i~~~~~~l~~~l~  464 (467)
                      ++    .+++.++++++||.++|+       |  |||++. .++   ++++++++|++.++
T Consensus       287 ~~~~~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~-~~~~~~~~~~~~~al~~~~~  346 (346)
T TIGR03576       287 VEEEKLIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAA-KDAERIGDDYLVEAVKDSLK  346 (346)
T ss_pred             CCCCCHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEec-ChHHhcCHHHHHHHHHhccC
Confidence            63    367889999899999995       2  999997 444   79999999988653

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.96  E-value=4.8e-26  Score=229.66  Aligned_cols=325  Identities=11%  Similarity=0.099  Sum_probs=221.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCc---ch----HHHHHHHHHHHhCCCCcccccCceee
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE---GL----AAFNKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~---G~----~~lr~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      +.++|||+.|+|.   +++. +|.++++..+.+.... ..|.+..   |.    .++++++|+++..        +++++
T Consensus        37 g~~~i~~~~~~~l---g~~~-~~~v~~~~~~~~~~~~-~~~~~s~~~~G~~~~~~~le~~ia~~~g~--------~~~ii  103 (393)
T TIGR01822        37 GREVLNFCANNYL---GLSS-HPDLIQAAKDALDEHG-FGMSSVRFICGTQDIHKELEAKIAAFLGT--------EDTIL  103 (393)
T ss_pred             CceEEEeeCCCcc---ccCC-CHHHHHHHHHHHHHhC-CCCCCcCcccCChHHHHHHHHHHHHHhCC--------CcEEE
Confidence            4579999999874   4443 6678888777775421 3555544   65    8899999999754        35666


Q ss_pred             eecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcE
Q 012238          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSF  231 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~  231 (467)
                        +.||++|+..+  +...+.+||.|+++.|+|+.+...++..+.+.+.++       .+|++.+++.+++.   ..+++
T Consensus       104 --~~~~~~a~~~~--~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~-------~~d~~~l~~~i~~~~~~~~~~~  172 (393)
T TIGR01822       104 --YASCFDANGGL--FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYA-------NNDMADLEAQLKEARAAGARHR  172 (393)
T ss_pred             --ECchHHHHHHH--HHHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhhhcCCCce
Confidence              68899999987  444577999999999999999998888887765442       37999999998752   12778


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcccCC
Q 012238          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYA  310 (467)
Q Consensus       232 ~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G  310 (467)
                      ++++++++||||.+.+   +++|+++|++||+++|+||+|.....+.   ........... .+.+++++|+||.+  +|
T Consensus       173 ~v~~~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~~---~~~~~~~~~~~~~~~di~~~s~sK~l--~g  244 (393)
T TIGR01822       173 LIATDGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLGP---TGRGSHELCGVMGRVDIITGTLGKAL--GG  244 (393)
T ss_pred             EEEEeCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcCC---CCCchHHhcCCCCCCeEEEEEChHHh--hC
Confidence            8898989999999877   4577778999999999999985222221   11111112121 23568899999986  47


Q ss_pred             CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc-cCC-CchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238          311 ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM-YSN-PPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  388 (467)
Q Consensus       311 ~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r  388 (467)
                      +|+||++   +++++++.            +....... ..+ .+...+.++..+|..       .+..+++++++++++
T Consensus       245 ~r~G~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~~~a~~~al~~-------~~~~~~~~~~~~~~~  302 (393)
T TIGR01822       245 ASGGFTT---ARKEVVEL------------LRQRSRPYLFSNSLPPAVVGASIKVLEM-------LEASNELRDRLWANT  302 (393)
T ss_pred             CCcEEEE---eCHHHHHH------------HHHhCccceecCCCCHHHHHHHHHHHHH-------HhcCHHHHHHHHHHH
Confidence            8999985   78888877            44332222 222 233333333333321       122456788899999


Q ss_pred             HHHHHHhhhccCCCCCcccccCCcceEEec--C-C-CHHHHHHHHHcccEEEeC-------CC----eEEeccC-ChhhH
Q 012238          389 QKLFDSLSAKDKSGKDWSFILRQIGMFSFT--G-L-NKAQSDNMTNKWHVYMTK-------DG----RISLAGL-SLAKC  452 (467)
Q Consensus       389 ~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~--~-l-~~~~~~~ll~~~gI~v~~-------gg----Ris~~~~-~~~~i  452 (467)
                      +++.+.|+ +.|    +.+..+.+.++.+.  + . ..++.+.|+++ ||.+..       .+    ||+++.. +++++
T Consensus       303 ~~l~~~L~-~~g----~~~~~~~~~~~~i~~~~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~iRis~~~~~t~edi  376 (393)
T TIGR01822       303 RYFRERME-AAG----FDIKPADHPIIPVMLYDAVLAQRFARRLLEE-GIYVTGFFYPVVPKGQARIRVQISAAHTEEQL  376 (393)
T ss_pred             HHHHHHHH-HcC----CCCCCCCCCEEEEEeCCHHHHHHHHHHHHHC-CeeEeeeCCCCCCCCCceEEEEECCCCCHHHH
Confidence            99999998 776    34444445544322  1 1 23456666665 998862       12    7776543 68999


Q ss_pred             HHHHHHHHHHHHhc
Q 012238          453 EYLADAIIDSYHNV  466 (467)
Q Consensus       453 ~~~~~~l~~~l~~~  466 (467)
                      ++++++|+++.+++
T Consensus       377 ~~~~~~l~~~~~~~  390 (393)
T TIGR01822       377 DRAVEAFTRIGREL  390 (393)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987754

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.96  E-value=2.4e-26  Score=232.09  Aligned_cols=330  Identities=13%  Similarity=0.088  Sum_probs=222.9

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcC---CCCcchHHHHHHHHHHHhCCCCcccccCceeeeec
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY---LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y---~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (467)
                      .+.+.|||+.|.|.   +++. ++.+.+++.+.+.... ..|   ....|.+++++++++++...++.   +++|++  |
T Consensus        40 ~g~~~i~l~~~~~~---~~~~-~~~i~~a~~~~~~~~~-~~~~~~~~~~G~~~l~~~l~~~la~~~g~---~~~i~~--t  109 (397)
T PRK06939         40 DGKEVINFCANNYL---GLAN-HPELIAAAKAALDSHG-FGMASVRFICGTQDLHKELEEKLAKFLGT---EDAILY--S  109 (397)
T ss_pred             CCCeEEEeeccCcc---ccCC-CHHHHHHHHHHHHHcC-CCCcccccccCCcHHHHHHHHHHHHHhCC---CcEEEE--c
Confidence            35679999999752   4543 6778888888775421 233   23468877777777776655442   356776  6


Q ss_pred             CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEE
Q 012238          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILL  234 (467)
Q Consensus       158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~  234 (467)
                      +| ++++..+  +...+.|||.|++++|+|+.+...++..|++++.++.       .|++.+++.+++.   ..++++++
T Consensus       110 sG-~~a~~~~--~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~  179 (397)
T PRK06939        110 SC-FDANGGL--FETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKLIA  179 (397)
T ss_pred             Ch-HHHHHHH--HHHhCCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeEEE
Confidence            66 7777776  4445779999999999999999999999998877654       5888898888642   23677888


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcccCCCcc
Q 012238          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERI  313 (467)
Q Consensus       235 i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~Ri  313 (467)
                      ..+.+||||...   ++++|+++|++||++||+||+|.....+.  ...... ..... ...+++++||||.++  |+|+
T Consensus       180 ~~~v~~~~G~~~---~~~~l~~la~~~~~~li~De~~~~g~~~~--~~~~~~-~~~~~~~~~~i~~~S~sK~~~--g~r~  251 (397)
T PRK06939        180 TDGVFSMDGDIA---PLPEICDLADKYDALVMVDDSHAVGFVGE--NGRGTV-EHFGVMDRVDIITGTLGKALG--GASG  251 (397)
T ss_pred             EecCcCCCCCcC---CHHHHHHHHHHhCCEEEEECcccccCcCC--CCCCHH-HHcCCCCCCcEEEEECHHHhC--ccCc
Confidence            778899999854   46688888999999999999995221221  011111 11121 134699999999984  5699


Q ss_pred             ceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc-cCCC-chHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012238          314 GAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM-YSNP-PVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL  391 (467)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~-~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l  391 (467)
                      ||++   +++++++.            +....... ..+. +...+.++..+++.       .+...+.+++++++++.+
T Consensus       252 G~v~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~~~a~~~al~~-------~~~~~~~~~~~~~~~~~l  309 (397)
T PRK06939        252 GYTA---GRKEVIDW------------LRQRSRPYLFSNSLAPAIVAASIKVLEL-------LEESDELRDRLWENARYF  309 (397)
T ss_pred             eEEE---eCHHHHHH------------HHHhCccccccCCCCHHHHHHHHHHHHH-------HhcCHHHHHHHHHHHHHH
Confidence            9995   77888777            44332221 2222 22223333333321       111246778899999999


Q ss_pred             HHHhhhccCCCCCcccccCCcceEEec-C--C-CHHHHHHHHHcccEEEeCC-------C----eEEecc-CChhhHHHH
Q 012238          392 FDSLSAKDKSGKDWSFILRQIGMFSFT-G--L-NKAQSDNMTNKWHVYMTKD-------G----RISLAG-LSLAKCEYL  455 (467)
Q Consensus       392 ~~~l~~~~g~~~~~~~~~~~~g~f~~~-~--l-~~~~~~~ll~~~gI~v~~g-------g----Ris~~~-~~~~~i~~~  455 (467)
                      .+.|+ +++    ++...+.++++.+. +  . +.++.++++++ ||.+.++       +    ||+++. .++++++++
T Consensus       310 ~~~L~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~  383 (397)
T PRK06939        310 REGMT-AAG----FTLGPGEHPIIPVMLGDAKLAQEFADRLLEE-GVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRA  383 (397)
T ss_pred             HHHHH-HcC----CCcCCCCCCEEEEEECCHHHHHHHHHHHHHC-CceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHH
Confidence            99998 776    45555666766433 2  1 23456777765 9988642       1    888754 488999999


Q ss_pred             HHHHHHHHHhc
Q 012238          456 ADAIIDSYHNV  466 (467)
Q Consensus       456 ~~~l~~~l~~~  466 (467)
                      +++|+++++++
T Consensus       384 l~~L~~~~~~~  394 (397)
T PRK06939        384 IDAFEKVGKEL  394 (397)
T ss_pred             HHHHHHHHHHh
Confidence            99999998865

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.96  E-value=4e-26  Score=227.34  Aligned_cols=318  Identities=14%  Similarity=0.043  Sum_probs=215.4

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-CC-CCcC----CCCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-NKEY----LPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~~-~~~Y----~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (467)
                      +.+.|||+.|.|.   +.+. ++.+.+++.+.+.. +. ...|    .......++++++++++..       ++.|++ 
T Consensus        15 g~~~id~~~~~~~---g~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~-------~~~i~~-   82 (360)
T TIGR00858        15 GRRLLNFSSNDYL---GLAS-HPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGT-------EAALLF-   82 (360)
T ss_pred             CceEEecccCCcc---cCCC-CHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC-------CCEEEE-
Confidence            4579999999652   3333 67788888887743 11 0112    1223466799999998642       456766 


Q ss_pred             ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC-CCcEEEE
Q 012238          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILL  234 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~i~  234 (467)
                       ++| ++++..+  +...+.+||+|+++.|+|..+...++..|++++.++.       +|++.+++.+++.. .++++++
T Consensus        83 -~~G-~~~~~~~--l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~~~~~v~  151 (360)
T TIGR00858        83 -SSG-YLANVGV--ISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRH-------NDVEHLERLLEKNRGERRKLIV  151 (360)
T ss_pred             -Cch-HHHHHHH--HHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecC-------CCHHHHHHHHHHcccCCCeEEE
Confidence             665 5555444  3344679999999999999999999999999887764       68899999887532 3578888


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH--hcCCeEEEEecCccCcccCCCc
Q 012238          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA--TRGMELLVAQSYSKNLGLYAER  312 (467)
Q Consensus       235 i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~S~SK~~~~~G~R  312 (467)
                      +++++||||...+.   ++|.++|+++|++||+||+|..+.++.   +..+.....  ...+++|+++||||.|+++|  
T Consensus       152 ~~~~~~~~G~~~~~---~~i~~l~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g--  223 (360)
T TIGR00858       152 TDGVFSMDGDIAPL---PQLVALAERYGAWLMVDDAHGTGVLGE---DGRGTLEHFGLKPEPVDIQVGTLSKALGSYG--  223 (360)
T ss_pred             EeCCccCCCCCcCH---HHHHHHHHHcCcEEEEECcccccCcCC---CCCchHHhcCCCccCCcEEEEechhhhhccC--
Confidence            99999999987775   577777999999999999997655432   111111111  22357899999999999877  


Q ss_pred             cceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc--cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012238          313 IGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQK  390 (467)
Q Consensus       313 iG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~  390 (467)
                       ||++   +++++++.            +.......  ..+.+...+.++..+++.       .....+.++++++++++
T Consensus       224 -G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~al~~-------~~~~~~~~~~~~~~~~~  280 (360)
T TIGR00858       224 -AYVA---GSQALIDY------------LINRARTLIFSTALPPAVAAAALAALEL-------IQEEPWRREKLLALIAR  280 (360)
T ss_pred             -cEEE---cCHHHHHH------------HHHhCccceecCCCCHHHHHHHHHHHHH-------HhhCHHHHHHHHHHHHH
Confidence             9985   77777776            44332221  122344433344444421       11234678899999999


Q ss_pred             HHHHhhhccCCCCCcccccCCcceEEecCCC-----HHHHHHHHHcccEEEeCC-------C----eEEecc-CChhhHH
Q 012238          391 LFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD-------G----RISLAG-LSLAKCE  453 (467)
Q Consensus       391 l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g-------g----Ris~~~-~~~~~i~  453 (467)
                      +.+.|+ +++    +.+.++ ++.|+|+.+.     .++.++++ ++||.+.++       |    ||+++. .++++++
T Consensus       281 l~~~L~-~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~-~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~  353 (360)
T TIGR00858       281 LRAGLE-ALG----FTLMPS-CTPIVPVIIGDNASALALAEELQ-QQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDID  353 (360)
T ss_pred             HHHHHH-HcC----CccCCC-CCCEEEEEeCCHHHHHHHHHHHH-HCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHH
Confidence            999999 776    455444 4557766442     24455555 469999642       2    999874 3779999


Q ss_pred             HHHHHHH
Q 012238          454 YLADAII  460 (467)
Q Consensus       454 ~~~~~l~  460 (467)
                      +++++|+
T Consensus       354 ~~l~~l~  360 (360)
T TIGR00858       354 RLAEALK  360 (360)
T ss_pred             HHHHhhC
Confidence            9998773

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PLN02721 threonine aldolase

Probab=99.95  E-value=8.2e-26  Score=224.62  Aligned_cols=324  Identities=15%  Similarity=0.107  Sum_probs=207.6

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (467)
                      ++++|+.+.+    ..  +++.+.+++.+.........|  .....+||+++++++...        .+++  +.+|+++
T Consensus         6 ~~~~~~~~~~----~~--~~~~~~~a~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~--------~~~~--~~~Gs~a   67 (353)
T PLN02721          6 RVVDLRSDTV----TK--PTDAMRAAMANAEVDDDVLGY--DPTALRLEEEMAKIFGKE--------AALF--VPSGTMG   67 (353)
T ss_pred             hhhhhhcccc----cC--CCHHHHHHHHhccCCCcccCC--CHHHHHHHHHHHHHhCCc--------eeEE--ecCccHH
Confidence            6789998877    33  367888888764111112333  334789999999997542        3445  5667777


Q ss_pred             HHHHHHHHHHhC-CCCEEEEcCCCCcchHH---HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC----CCCcEEEEe
Q 012238          164 LRLAAALIERYF-PGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA----PGGSFILLH  235 (467)
Q Consensus       164 l~l~~~~l~~~~-~gd~Vlv~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~----~~~~~~i~i  235 (467)
                      ..++  +...+. +||+|++++|+|.....   .+...|++++.++.+  +++.+|++.+++.+++.    .++++++++
T Consensus        68 ~~~~--l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l  143 (353)
T PLN02721         68 NLIS--VLVHCDVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNN--EDGTMDLDAIEAAIRPKGDDHFPTTRLICL  143 (353)
T ss_pred             HHHH--HHHHccCCCCeEEEcCccceehhcccchhhhcCceeEecCCC--cCCCcCHHHHHHHHHhccCCCCCcceEEEE
Confidence            6554  344466 89999999999854433   567889999999873  45679999999999732    135677777


Q ss_pred             CC-CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccc
Q 012238          236 GC-AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (467)
Q Consensus       236 ~~-p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG  314 (467)
                      ++ +|||||.+++.+++++|+++|+++|+++|+|++|..........+   ...+....+  .++.|+||.++.   ++|
T Consensus       144 ~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~---~~~~~~~~d--~~~~s~sK~l~~---~~G  215 (353)
T PLN02721        144 ENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVP---VHRLVKAAD--SVSVCLSKGLGA---PVG  215 (353)
T ss_pred             eccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCC---HHHHhhhCC--EEEEecccccCC---cee
Confidence            55 688999999999999999999999999999999753221100011   112222222  345579999874   367


Q ss_pred             eEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          315 AMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS  394 (467)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~  394 (467)
                      |++  .+++++++.            +..........++..++.++..+.   .+    ++.++.+ ++..++++.+.+.
T Consensus       216 ~~~--~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~---~l----~~~~~~~-~~~~~~~~~l~~~  273 (353)
T PLN02721        216 SVI--VGSKSFIRK------------AKRLRKTLGGGMRQVGVLAAAALV---AL----QENVPKL-EDDHKKAKLLAEG  273 (353)
T ss_pred             eEE--ecCHHHHHh------------HHHHHHhcCCCeehhHHHHHHHHH---HH----HHHHHHH-HHHHHHHHHHHHH
Confidence            743  478888776            333332222122222222221111   11    1222333 2334567888999


Q ss_pred             hhhccCCCCCcc--cccCCcceEEecCC------CHH-HHHHHHHcccEEEeCCC----eEEec-cCChhhHHHHHHHHH
Q 012238          395 LSAKDKSGKDWS--FILRQIGMFSFTGL------NKA-QSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAII  460 (467)
Q Consensus       395 l~~~~g~~~~~~--~~~~~~g~f~~~~l------~~~-~~~~ll~~~gI~v~~gg----Ris~~-~~~~~~i~~~~~~l~  460 (467)
                      |+ +++.   +.  ...+.++ |+|+.+      +.+ +.++|. ++||.+.+++    ||+++ ..+++++++++++|+
T Consensus       274 L~-~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~-~~gi~v~~~~~~~lR~~~~~~~~~~~i~~~~~~l~  347 (353)
T PLN02721        274 LN-QIKG---LRVNVAAVETN-IVYFDITDGSRITAEKLCKSLE-EHGVLLMPGNSSRIRVVTHHQISDSDVQYTLSCFQ  347 (353)
T ss_pred             HH-hCCC---cEEecCCccce-EEEEEccCCccccHHHHHHHHH-hCCcEEecCCCceEEEEecCcCCHHHHHHHHHHHH
Confidence            98 7631   32  2344444 566533      233 355555 6799999986    99986 457899999999999


Q ss_pred             HHHHh
Q 012238          461 DSYHN  465 (467)
Q Consensus       461 ~~l~~  465 (467)
                      +++..
T Consensus       348 ~~~~~  352 (353)
T PLN02721        348 QAALT  352 (353)
T ss_pred             HHhhc
Confidence            98764

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.95  E-value=1.8e-25  Score=224.90  Aligned_cols=330  Identities=15%  Similarity=0.132  Sum_probs=225.0

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-CC-CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~~-~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.|||+.|.+.   +++. ++.+.+++.+.+.. +. ...|.+..|..++++.+++++....+.   ++.+++  ++|
T Consensus        32 g~~~id~~~~~~~---g~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~---~~~i~~--~sG  102 (385)
T TIGR01825        32 GKEVINLSSNNYL---GFAD-HPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKT---EAALVF--QSG  102 (385)
T ss_pred             CceEEEeeccCcc---CCCC-CHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCC---CcEEEE--CcH
Confidence            4589999998642   4544 67788888777653 21 245777889999999999998765442   345666  655


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC-CCcEEEEeCCC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLHGCA  238 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~i~i~~p  238 (467)
                       ++++.++  +...+.+||.|+++.|+|..+...++..|++++.++       .+|++.+++.+++.. +++++++++++
T Consensus       103 -~~a~~~a--~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~v~~~~v  172 (385)
T TIGR01825       103 -FNTNQGV--LSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYK-------HADMDDLDRVLRENPSYGKKLIVTDGV  172 (385)
T ss_pred             -HHHHHHH--HHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhccCCCeEEEEecC
Confidence             6666655  344577999999999999999888888888876653       378889988887532 36788888999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEE
Q 012238          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (467)
Q Consensus       239 ~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (467)
                      +||||.+.+.   ++|.++|++||+++|+||+|..+.++.....  ....+.-..+.++++.||||.++++|   ||++ 
T Consensus       173 ~~~tG~~~~~---~~i~~l~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~s~sK~~~~~g---G~~~-  243 (385)
T TIGR01825       173 FSMDGDVAPL---PEIVELAERYGAVTYVDDAHGSGVMGEAGRG--TVHHFGLEDKVDIQVGTLSKAIGVVG---GYAA-  243 (385)
T ss_pred             CcCCCCccCH---HHHHHHHHHhCCEEEEECcccccCcCCCCCc--cHhhcCCCcCCcEEEEeccHHhhcCC---CEEe-
Confidence            9999998875   5778889999999999999977654411111  11111112357899999999998766   9984 


Q ss_pred             ecCCHHHHhhhhhhhHHHHHHHHHhhccC-ccC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          319 VCSSSDLAARCCEVAVIQVKSQLKRLARP-MYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                        +++++++.            +...... ... ..+...+.++..+++..      .+ ..+..++++++++++.+.|+
T Consensus       244 --~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~al~~~------~~-~~~~~~~~~~~~~~l~~~L~  302 (385)
T TIGR01825       244 --GHKELIEY------------LKNRARPFLFSTAQPPAVVAALAAAVDEL------QR-SPELMERLWDNTRFFKAGLG  302 (385)
T ss_pred             --cCHHHHHH------------HHHhCccccccCCCCHHHHHHHHHHHHHH------hc-CHHHHHHHHHHHHHHHHHHH
Confidence              77877776            4433221 122 23444455555544311      00 12355667778999999998


Q ss_pred             hccCCCCCcccccCCcceEEec-CC---CHHHHHHHHHcccEEEeCC-------C----eEEec-cCChhhHHHHHHHHH
Q 012238          397 AKDKSGKDWSFILRQIGMFSFT-GL---NKAQSDNMTNKWHVYMTKD-------G----RISLA-GLSLAKCEYLADAII  460 (467)
Q Consensus       397 ~~~g~~~~~~~~~~~~g~f~~~-~l---~~~~~~~ll~~~gI~v~~g-------g----Ris~~-~~~~~~i~~~~~~l~  460 (467)
                       ++|    +++..+.+.++.+. +.   +.++.+.++++ ||.+.+.       |    |++++ ..+++++++++++|+
T Consensus       303 -~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~  376 (385)
T TIGR01825       303 -KLG----YDTGGSETPITPVVIGDEKAAQEFSRRLFDE-GIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYE  376 (385)
T ss_pred             -HcC----CCCCCCCCCEEEEEECCHHHHHHHHHHHHHC-CcEEcccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHH
Confidence             776    45666665544322 21   23456777776 9988531       2    67653 348899999999999


Q ss_pred             HHHHhc
Q 012238          461 DSYHNV  466 (467)
Q Consensus       461 ~~l~~~  466 (467)
                      ++++++
T Consensus       377 ~~~~~~  382 (385)
T TIGR01825       377 KVGKEL  382 (385)
T ss_pred             HHHHHh
Confidence            998764

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.95  E-value=7.8e-26  Score=228.62  Aligned_cols=325  Identities=16%  Similarity=0.148  Sum_probs=218.2

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-C-C--cCC----CCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-N-K--EYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-~-~--~Y~----~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (467)
                      +.+.|..+      +..+.++.+.+++.+.+.... . .  .+.    .....+++|+.++++++..     ++++|++ 
T Consensus        19 ~~~yld~a------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-----~~~~i~~-   86 (401)
T PRK10874         19 AGVYLDSA------ATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAP-----DAKNIVW-   86 (401)
T ss_pred             ceEEEeCC------cccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCC-----CCCEEEE-
Confidence            35655544      444457889999988774311 0 0  010    0223778999999997652     2788999 


Q ss_pred             ecCCchhHHHHHHHHHH--HhCCCCEEEEcCCCCcc----hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCC
Q 012238          156 QGLSGTGSLRLAAALIE--RYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~--~~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (467)
                       |+|+++++++++..+.  .+.+||+|++++|.|+.    +...++..|++++.++.+  .++.+|++.+++.++   ++
T Consensus        87 -~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~---~~  160 (401)
T PRK10874         87 -TRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLG--ADRLPDVDLLPELIT---PR  160 (401)
T ss_pred             -ECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecC--CCCcCCHHHHHHhcC---cC
Confidence             9999999999743332  13689999999999854    556678899999999983  356789999999996   57


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC
Q 012238          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (467)
                      ++++++++++||||.+++.+   +|+++|+++|+++|+|++|......   .+   +    ......+++.|++|.+|++
T Consensus       161 t~lv~i~~~~n~tG~~~~~~---~i~~l~~~~g~~~ivD~a~~~g~~~---~~---~----~~~~~d~~~~s~~K~~gp~  227 (401)
T PRK10874        161 TRILALGQMSNVTGGCPDLA---RAITLAHQAGMVVMVDGAQGAVHFP---AD---V----QALDIDFYAFSGHKLYGPT  227 (401)
T ss_pred             cEEEEEeCCcccccCcCCHH---HHHHHHHHcCCEEEEECCccccccc---CC---c----hhcCCCEEEEecccccCCC
Confidence            88999999999999999865   6777799999999999997532221   11   1    1112357789999999987


Q ss_pred             CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc---------------------cCccCCCchHHHHHHHHHhCChh
Q 012238          310 AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA---------------------RPMYSNPPVHGARIVANVVGNPA  368 (467)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~---------------------~~~~~~~~~~~~~~~~~~L~~~~  368 (467)
                      |  +||++   .+++.++.            +....                     +.....++...+.++..++.   
T Consensus       228 G--~G~l~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~---  287 (401)
T PRK10874        228 G--IGVLY---GKSELLEA------------MSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALE---  287 (401)
T ss_pred             c--cEEEE---EchHHHhc------------CCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHH---
Confidence            7  59986   56666665            22111                     00111233334444444432   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCccccc-CCcceEEec--CCCHHHHHHHHHcccEEEeCC-----
Q 012238          369 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFIL-RQIGMFSFT--GLNKAQSDNMTNKWHVYMTKD-----  439 (467)
Q Consensus       369 ~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~-g~~~~~~~~~-~~~g~f~~~--~l~~~~~~~ll~~~gI~v~~g-----  439 (467)
                      +..  +....+..++.++.++++.+.|+ ++ |    +.... +..+++.|.  +++.+.+.+.|+++||.+.+|     
T Consensus       288 ~l~--~~g~~~~~~~~~~l~~~l~~~l~-~~~g----~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~  360 (401)
T PRK10874        288 WLA--DIDINQAESWSRSLATLAEDALA-KLPG----FRSFRCQDSSLLAFDFAGVHHSDLVTLLAEYGIALRAGQHCAQ  360 (401)
T ss_pred             HHH--HhCHHHHHHHHHHHHHHHHHHHh-cCCC----EEEeCCCCCcEEEEEECCcCHHHHHHHHHHCCcEEeccccchH
Confidence            111  11234567778888899999988 65 3    44443 334433322  445555555566679998763     


Q ss_pred             ---------C--eEEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238          440 ---------G--RISLAGL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 ---------g--Ris~~~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                               |  |||++.. +++++++++++|+++++.+
T Consensus       361 ~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~~  399 (401)
T PRK10874        361 PLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALELL  399 (401)
T ss_pred             HHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence                     3  9998754 6689999999999988764

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.95  E-value=1.7e-25  Score=225.93  Aligned_cols=326  Identities=14%  Similarity=0.110  Sum_probs=215.8

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC-CCCcCCCC-------cchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-ENKEYLPI-------EGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~-~~~~Y~~~-------~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (467)
                      +.+.|..+      +..++++.+.+++.+.+... ....+.+.       ..++++|+.++++++..     ++++|++ 
T Consensus        16 ~~iyld~a------~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-----~~~~i~~-   83 (398)
T TIGR03392        16 GTVYLDSA------ATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAP-----DAENIVW-   83 (398)
T ss_pred             CeEEeeCc------cccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCC-----CCCeEEE-
Confidence            35555554      34445788999988876421 11112221       23677999999997653     2678998 


Q ss_pred             ecCCchhHHHHHHHHHH--HhCCCCEEEEcCCCCcc----hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCC
Q 012238          156 QGLSGTGSLRLAAALIE--RYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~--~~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (467)
                       |+|+|+++++++..+.  .+.+||+|++++|+|+.    +...++..|++++.++.+  .++.+|++.+++.++   ++
T Consensus        84 -t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~~~~~l~~~i~---~~  157 (398)
T TIGR03392        84 -TRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIG--ADLLPDIRQLPELLT---PR  157 (398)
T ss_pred             -eCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecC--CCCCcCHHHHHHHhc---cC
Confidence             9999999999733321  14689999999999865    456678899999999984  346789999999987   57


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC
Q 012238          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (467)
                      ++++++++++||||.+.+.+   +|+++|+++|+++++|++|......   .+   +.   .. .-.+++.|++|.+|++
T Consensus       158 t~lv~i~~~~n~tG~~~~~~---~i~~~~~~~~~~~ivD~a~~~~~~~---~~---~~---~~-~~d~~~~s~~K~~gp~  224 (398)
T TIGR03392       158 TRILALGQMSNVTGGCPDLA---RAITLAHQYGAVVVVDGAQGVVHGP---PD---VQ---AL-DIDFYAFSGHKLYGPT  224 (398)
T ss_pred             ceEEEEECccccccccCCHH---HHHHHHHHcCCEEEEEhhhhcCCCC---CC---hh---hc-CCCEEEEecccccCCC
Confidence            88999999999999998865   6777799999999999997543221   11   11   11 2346788889999977


Q ss_pred             CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc---------------------cCccCCCchHHHHHHHHHhCChh
Q 012238          310 AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA---------------------RPMYSNPPVHGARIVANVVGNPA  368 (467)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~---------------------~~~~~~~~~~~~~~~~~~L~~~~  368 (467)
                      |  +||++   .+++.++.            +....                     +.....++.....++..+++   
T Consensus       225 G--~G~l~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~---  284 (398)
T TIGR03392       225 G--IGVLY---GKTELLEA------------MPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALE---  284 (398)
T ss_pred             c--eEEEE---EcHHHHhh------------CCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHH---
Confidence            7  79996   56666655            21110                     00011223223333333332   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccc-CCcceEEec--CCCHHHHHHHHHcccEEEeCC------
Q 012238          369 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL-RQIGMFSFT--GLNKAQSDNMTNKWHVYMTKD------  439 (467)
Q Consensus       369 ~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~-~~~g~f~~~--~l~~~~~~~ll~~~gI~v~~g------  439 (467)
                      +..  +..++++.++.++.++++.+.|+ ++.  + +.... +..+++.|.  +.+.+.+.+.|+++||.+..|      
T Consensus       285 ~l~--~~g~~~i~~~~~~l~~~l~~~l~-~l~--g-~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~  358 (398)
T TIGR03392       285 WLT--DIDIAAAEAWSVSLADLAEERLA-QLP--G-FRSFRCPGSSLLAFDFAGVHHSDLAALLAESGIALRAGQHCAQP  358 (398)
T ss_pred             HHH--HhCHHHHHHHHHHHHHHHHHHHh-cCC--C-eEEeCCCCCcEEEEEeCCcCHHHHHHHHHhCCEEEecCccchHH
Confidence            111  11244667777888888998887 652  1 34333 333433322  445555555556679998753      


Q ss_pred             --------C--eEEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238          440 --------G--RISLAGL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 --------g--Ris~~~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                              |  |||+... +++++++++++|+++++.+
T Consensus       359 ~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~  396 (398)
T TIGR03392       359 LMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALELL  396 (398)
T ss_pred             HHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence                    3  9998654 6799999999999998764

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PLN02822 serine palmitoyltransferase

Probab=99.95  E-value=7.2e-26  Score=232.02  Aligned_cols=326  Identities=12%  Similarity=0.063  Sum_probs=228.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-CC-----CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-----NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~~-----~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (467)
                      +.+.|||+.|.+.+   +.. ++.++++..+.+.. +.     ...|.+..+..+|++++++++..       ++.|++ 
T Consensus       108 G~~~id~~s~~~lg---l~~-~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~-------~~~i~~-  175 (481)
T PLN02822        108 GKDVVNFASANYLG---LIG-NEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGT-------PDSILY-  175 (481)
T ss_pred             CceEEEeECCCcCC---CCC-CHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCC-------CCEEEE-
Confidence            45789999998743   333 67788888887754 21     12467778899999999999753       567887 


Q ss_pred             ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc---C---CCC
Q 012238          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---A---PGG  229 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~---~~~  229 (467)
                       +.|++ ++..+  +.+.+.+||.|++...++..+...++..|.+++.++..       |.+.++..+++   .   .++
T Consensus       176 -s~G~~-a~~sa--i~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~n-------d~~~l~~~l~~~~~~~~~~~~  244 (481)
T PLN02822        176 -SYGLS-TIFSV--IPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHN-------DMESLRNTLEKLTAENKRKKK  244 (481)
T ss_pred             -CCHHH-HHHHH--HHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCC-------CHHHHHHHHHHHhhhhcccCC
Confidence             77766 45554  34456799999988777777777888889998888763       34444444432   1   122


Q ss_pred             c-EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh--cCCeEEEEecCccCc
Q 012238          230 S-FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT--RGMELLVAQSYSKNL  306 (467)
Q Consensus       230 ~-~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~  306 (467)
                      + +++++..++|+||.+++   +++|+++|++||+++|+||+|....++....   .+.....  ..+..++++||||.+
T Consensus       245 ~~~~Ivve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~---G~~e~~~v~~~~~dii~~s~sKal  318 (481)
T PLN02822        245 LRRYIVVEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSGR---GLSEHFGVPIEKIDIITAAMGHAL  318 (481)
T ss_pred             CcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCC---ChHHHcCCCCCCCeEEEecchhhh
Confidence            3 78888999999999999   5678888999999999999998555542111   1111111  124578899999999


Q ss_pred             ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc-cC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012238          307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM-YS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  384 (467)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~  384 (467)
                      |++|   ||++   +++++++.            ++...... ++ +.|...+.++..+|+..       +...+.++++
T Consensus       319 g~~G---G~i~---g~~~ii~~------------~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l-------~~~~~~~~~l  373 (481)
T PLN02822        319 ATEG---GFCT---GSARVVDH------------QRLSSSGYVFSASLPPYLASAAITAIDVL-------EDNPSVLAKL  373 (481)
T ss_pred             hhCC---eEEE---cCHHHHHH------------HHhcCCceeeccccCHHHHHHHHHHHHHH-------HhCHHHHHHH
Confidence            9988   9985   88888876            44333222 32 34566666665565321       1124677889


Q ss_pred             HHHHHHHHHHhhhcc-CCCCCcccccCCcceEEecCCC-------------HHHHHHHHHcccEEEeCC-----------
Q 012238          385 KNVRQKLFDSLSAKD-KSGKDWSFILRQIGMFSFTGLN-------------KAQSDNMTNKWHVYMTKD-----------  439 (467)
Q Consensus       385 ~~~r~~l~~~l~~~~-g~~~~~~~~~~~~g~f~~~~l~-------------~~~~~~ll~~~gI~v~~g-----------  439 (467)
                      +++++++.+.|+ +. |    +.+..+.+++++++.+.             .+++++|++++||++.++           
T Consensus       374 ~~~~~~l~~~L~-~~~g----~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~  448 (481)
T PLN02822        374 KENIALLHKGLS-DIPG----LSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLP  448 (481)
T ss_pred             HHHHHHHHHHHH-hcCC----cccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCC
Confidence            999999999998 65 4    45555667777766431             245778886789999864           


Q ss_pred             -C-eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          440 -G-RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 -g-Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                       + ||+++. .++++|++++++|++++.++
T Consensus       449 ~~lRi~is~~~t~edI~~~~~~l~~~~~~~  478 (481)
T PLN02822        449 VGIRLFVSAGHTESDILKASESLKRVAASV  478 (481)
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence             1 887653 38899999999999998764

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.95  E-value=1.3e-25  Score=225.32  Aligned_cols=332  Identities=13%  Similarity=0.064  Sum_probs=215.5

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.|||..|...+.-+.  .+|.+.+++.+.+....  ...| +..-..+|.+.+++++ +       .+++++  ++|
T Consensus        26 g~~~id~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-g-------~~~~~~--~~s   92 (379)
T TIGR00707        26 GKEYLDFVAGIAVNSLGH--AHPKLVEALKEQLEKLVHVSNLY-YTEPQEELAEKLVEHS-G-------ADRVFF--CNS   92 (379)
T ss_pred             CCEEEEcCcchhhccCCC--CCHHHHHHHHHHHhhcccccccc-CCHHHHHHHHHHHhhC-C-------CCEEEE--eCC
Confidence            347899999855332232  36788888888775421  1234 4445667777777774 2       248888  999


Q ss_pred             chhHHHHHHHHHHHhC-----CCCEEEEcCCCCcchHHHHhhCCCCeEE----eeeecCCCCC--CChhhHHHHHHcCCC
Q 012238          160 GTGSLRLAAALIERYF-----PGAKVLISSPTWGNHKNIFNDARVPWSE----YRYYDPKTVG--LDFEGMIADIKAAPG  228 (467)
Q Consensus       160 gt~al~l~~~~l~~~~-----~gd~Vlv~~P~y~~~~~~~~~~G~~~~~----v~~~~~~~~~--~d~~~l~~~l~~~~~  228 (467)
                      |++++.++.+++....     +||+|++++|+|..+...+...+.....    .++..+..+.  .|++.+++.+.   +
T Consensus        93 g~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~  169 (379)
T TIGR00707        93 GAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAID---D  169 (379)
T ss_pred             cHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhh---h
Confidence            9999999855443222     3799999999998887766655554321    2221111111  28899999887   4


Q ss_pred             CcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          229 GSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      ++++++++.++||+|.. ++.+++++|.++|+++|+++|+||+|.++.+.+   ...+. ......++++   +|||.++
T Consensus       170 ~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g---~~~~~-~~~~~~~d~~---t~sK~~~  242 (379)
T TIGR00707       170 ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTG---KFFAY-EHYGIEPDII---TLAKGLG  242 (379)
T ss_pred             CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---hhhhH-HhcCCCCCEE---EEccccc
Confidence            66788877777777764 689999999999999999999999998876532   11111 1112223433   6899999


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  387 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~  387 (467)
                       +|+|+||++   +++++++.            +.........+.+.+.|.++..+|+.-.        -.+..++++++
T Consensus       243 -~G~riG~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~aa~aaL~~~~--------~~~~~~~~~~~  298 (379)
T TIGR00707       243 -GGVPIGATL---AKEEVAEA------------FTPGDHGSTFGGNPLACAAALAVLEVIE--------KERLLENVKEK  298 (379)
T ss_pred             -CCcccEEEE---EcHHHHhh------------hcCCCCCCCCCCCHHHHHHHHHHHHHHH--------hhhHHHHHHHH
Confidence             999999995   67777776            5543333334567778888877664210        11344556666


Q ss_pred             HHHHHHHhhhccCCCCCcccccCCcceEEecCC--CH-HHHHHHHHcccEEEeCCC----eEEecc-CChhhHHHHHHHH
Q 012238          388 RQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--NK-AQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEYLADAI  459 (467)
Q Consensus       388 r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~~-~~~~~ll~~~gI~v~~gg----Ris~~~-~~~~~i~~~~~~l  459 (467)
                      ++.+.+.|+ +++....+....+ .|.|+|+.+  +. ++.+. +.+.||.+.|++    ||+++. .+++++++++++|
T Consensus       299 ~~~~~~~l~-~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~-l~~~Gv~v~~~~~~~lRi~~~~~~t~~~i~~~~~~l  375 (379)
T TIGR00707       299 GDYFKERLE-ELGKNYPNKEVRG-KGLMLGIELEAPCKDIVKK-ALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVSAL  375 (379)
T ss_pred             HHHHHHHHH-HHHhhCCCCcccc-CceEEEEEecCcHHHHHHH-HHHCCcEEeeCCCCEEEEECCCcCCHHHHHHHHHHH
Confidence            666666666 4432111222223 466666644  33 34555 455699999875    888643 4889999999999


Q ss_pred             HHHH
Q 012238          460 IDSY  463 (467)
Q Consensus       460 ~~~l  463 (467)
                      ++++
T Consensus       376 ~~~~  379 (379)
T TIGR00707       376 EEAI  379 (379)
T ss_pred             HHhC
Confidence            8764

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.95  E-value=1.4e-26  Score=205.53  Aligned_cols=276  Identities=19%  Similarity=0.193  Sum_probs=212.7

Q ss_pred             cccccCceeeeecCCchhHHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHH
Q 012238          145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI  223 (467)
Q Consensus       145 ~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l  223 (467)
                      ...++++|++  ..|+.+.+.++  +...+.|| ++|+...|+|+.|.-.+...+++++.+|..  .+|.++.|.+.+.+
T Consensus        82 kpLt~dnic~--GvGsDE~ID~i--iR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~--pdF~lnvdai~evl  155 (375)
T KOG0633|consen   82 KPLTSDNICV--GVGSDELIDLI--IRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLN--PDFSLNVDAIAEVL  155 (375)
T ss_pred             CCCCccceEE--ecCcHHHHHHH--HhheecCCccceeecCCcceeEEEEeecCCceEEEecCC--CCccccHHHHHHHH
Confidence            4456899999  99999999997  33346699 899999999999988888999999999994  47899999999988


Q ss_pred             HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCc
Q 012238          224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (467)
Q Consensus       224 ~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S  303 (467)
                      +.. ...+++++++|+||||..+..+++++|.+.-.  |.++++||+|.+|....      +-..++...++++++++||
T Consensus       156 ~~d-s~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYidFsg~~------S~~~lV~kYpNLivlqTlS  226 (375)
T KOG0633|consen  156 ELD-SKIKCIFLTSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYIDFSGVE------SRMKLVKKYPNLIVLQTLS  226 (375)
T ss_pred             hcc-ccceEEEEcCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEeecccc------ccchHhHhCCceeehhhhh
Confidence            753 47789999999999999999999999976432  78999999999997531      2224567889999999999


Q ss_pred             cCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012238          304 KNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR  383 (467)
Q Consensus       304 K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~  383 (467)
                      |.||++|+|+||-.   .+..+++-            +.....+.  +.+..+..++..+|++...     +.++..+..
T Consensus       227 KsfGLAGiRvG~~~---~~~~ia~i------------ln~~KaPY--NiS~~~s~~AL~Als~~n~-----kkme~~rda  284 (375)
T KOG0633|consen  227 KSFGLAGIRVGYGA---FPLSIAEI------------LNRAKAPY--NISVAGSVAALAALSDSNG-----KKMEDVRDA  284 (375)
T ss_pred             hhcCcceeEeeccc---ccHHHHHH------------HHhccCCc--cccchhHHHHHHhcCcccc-----hHHHHHHHH
Confidence            99999999999995   67777776            66665553  4555667788888885433     347788888


Q ss_pred             HHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-------CHHHHHHHHHcccEEEeCCC---------eEEeccC
Q 012238          384 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-------NKAQSDNMTNKWHVYMTKDG---------RISLAGL  447 (467)
Q Consensus       384 ~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-------~~~~~~~ll~~~gI~v~~gg---------Ris~~~~  447 (467)
                      +.+.|.++...|. +..+-+  ++..+....|+...+       +.....+++.++||.++--|         ||+.+. 
T Consensus       285 iv~er~RL~keLt-~v~~~~--~~~gg~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~~c~G~lRitvGt-  360 (375)
T KOG0633|consen  285 IVRERERLFKELT-EVPFLN--DYPGGSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITVGT-  360 (375)
T ss_pred             HHHHHHHHHHHhh-cCcccc--CCCCcccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCccccceeEEEEcCC-
Confidence            8889999999998 765322  223333344655422       34556667777899997643         999986 


Q ss_pred             ChhhHHHHHHHHHHH
Q 012238          448 SLAKCEYLADAIIDS  462 (467)
Q Consensus       448 ~~~~i~~~~~~l~~~  462 (467)
                       +|+..-+++.|++.
T Consensus       361 -~EentvL~k~~K~~  374 (375)
T KOG0633|consen  361 -PEENTVLMKCLKQF  374 (375)
T ss_pred             -cccchHHHHHHHhh
Confidence             46677777777664

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.95  E-value=2.2e-25  Score=225.05  Aligned_cols=336  Identities=13%  Similarity=0.038  Sum_probs=215.6

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.|||..|.+.+.-+.  ..|.+.+++.+.+....   +....+..++++.+++++....+    .+++++  ++||+
T Consensus        38 g~~~iD~~~g~~~~~lG~--~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~~----~~~v~~--~~gg~  106 (396)
T PRK02627         38 GKEYLDFLAGIAVNNLGH--CHPKLVEAIQEQAAKLI---HTSNLYYIEPQEELAEKLVELSG----MDKVFF--CNSGA  106 (396)
T ss_pred             CCEEEECCccHHhccCCC--CCHHHHHHHHHHHhhcc---ccccccCCHHHHHHHHHHHhhcC----CCEEEE--CCCcH
Confidence            357899999876322222  24778888888765421   11112234677777777765433    368999  99999


Q ss_pred             hHHHHHHHHHHHhC-C----CCEEEEcCCCCcchHHHHhhCCCCeE----EeeeecCCCC----CCChhhHHHHHHcCCC
Q 012238          162 GSLRLAAALIERYF-P----GAKVLISSPTWGNHKNIFNDARVPWS----EYRYYDPKTV----GLDFEGMIADIKAAPG  228 (467)
Q Consensus       162 ~al~l~~~~l~~~~-~----gd~Vlv~~P~y~~~~~~~~~~G~~~~----~v~~~~~~~~----~~d~~~l~~~l~~~~~  228 (467)
                      +|+.++.++..... +    .++|++..++|..+.......+....    ..+..  .++    ..|++.+++.+.   +
T Consensus       107 eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~i~---~  181 (396)
T PRK02627        107 EANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLV--EGFIYVPFNDIEALKAAIT---D  181 (396)
T ss_pred             HHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCC--CCceEeCCCCHHHHHHhcC---C
Confidence            99999855432222 1    17899999999877655443332221    11111  111    128899999885   5


Q ss_pred             CcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          229 GSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG-~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      +++++++.+++||+| ..++++.+++|.++|++||+++|+||+|.++...+   ..++.. .....++   +.+|||.++
T Consensus       182 ~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g---~~~~~~-~~~~~pd---i~t~sK~~~  254 (396)
T PRK02627        182 KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTG---KLFAYQ-HYGIEPD---IMTLAKGLG  254 (396)
T ss_pred             CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccC---ceeeeh-hcCCCCC---EEEEcchhh
Confidence            778888888999999 68899999999999999999999999999886532   111111 1122223   337999999


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  387 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~  387 (467)
                       +|+|+||++   .++++++.            +.........+.+.+.|.++..+|+....    .+..+..++..+..
T Consensus       255 -~G~rig~~~---~~~~~~~~------------~~~~~~~~t~~~~~~~~~aa~~~l~~~~~----~~~~~~~~~~~~~~  314 (396)
T PRK02627        255 -GGVPIGAVL---AKEKVADV------------FTPGDHGSTFGGNPLACAAALAVIEIIEE----EGLLENAAEVGEYL  314 (396)
T ss_pred             -CCcccEEEE---EcHHHHhc------------cCCCCCCCCCCCCHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHH
Confidence             999999996   66777766            54333333446777888888777753211    11122333333333


Q ss_pred             HHHHHHHhhhccCCCCCcccccCCcceEEecCC--C-HHHHHHHHHcccEEEeCCC----eEEec-cCChhhHHHHHHHH
Q 012238          388 RQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--N-KAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAI  459 (467)
Q Consensus       388 r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~-~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~~~i~~~~~~l  459 (467)
                      ++.+.+.+. .++.   +....+ .|.|+|+.+  + .+++.+++++ ||.+.+++    ||+++ ..+++++++++++|
T Consensus       315 ~~~l~~~~~-~~~~---~~~~~~-~g~~~~i~~~~~~~~~~~~l~~~-Gv~v~~~~~~~lRi~~~~~~~~~~i~~~~~~l  388 (396)
T PRK02627        315 RAKLRELLE-KYPG---IKEVRG-LGLMIGIELDRPAAEIVKKALEK-GLLINVTGDNVLRLLPPLIISKEEIDEAVDRL  388 (396)
T ss_pred             HHHHHHHHH-hCCC---eeeecc-CcEEEEEEecCcHHHHHHHHHHC-CeEEeecCCCEEEEECCcccCHHHHHHHHHHH
Confidence            333433333 3321   222223 466777754  2 3556777765 99999875    88764 44889999999999


Q ss_pred             HHHHHhc
Q 012238          460 IDSYHNV  466 (467)
Q Consensus       460 ~~~l~~~  466 (467)
                      +++++++
T Consensus       389 ~~~l~~~  395 (396)
T PRK02627        389 EEVLKEL  395 (396)
T ss_pred             HHHHHhh
Confidence            9998865

>PLN02483 serine palmitoyltransferase

Probab=99.95  E-value=6.3e-25  Score=225.52  Aligned_cols=330  Identities=13%  Similarity=0.037  Sum_probs=218.2

Q ss_pred             CCcEEecCcccCCCCCC-CCchHHHHHHHHHHHhc--CCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           83 EKKLNLGVGAYRTEELQ-PYVLDVVKKAENLMLER--GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~-p~~~~~v~~a~~~~~~~--~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      .+.+||+.-.|..-+.. +...+.+.+++.+.-..  +....|++..+..++++++|++++.       ++.|++  +.|
T Consensus       100 ~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~-------~~ai~~--~~G  170 (489)
T PLN02483        100 RRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGK-------PAAIVF--GMG  170 (489)
T ss_pred             ceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCC-------CcEEEE--CCH
Confidence            47899999888644322 22356777777775422  2224587888999999999999763       556766  554


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC----------CCC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA----------PGG  229 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~----------~~~  229 (467)
                       ..+...+  +...+.+||.|++.+|+|..+...++..|++++.++.       .|++.+++.+++.          +.+
T Consensus       171 -~~an~~~--i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~-------~d~~~le~~l~~~i~~~~p~t~~p~~  240 (489)
T PLN02483        171 -YATNSTI--IPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQH-------NTPSHLEEVLREQIAEGQPRTHRPWK  240 (489)
T ss_pred             -HHHHHHH--HHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeC-------CCHHHHHHHHHhhhhccccccccCCc
Confidence             4444443  3445779999999999999999999999999999875       2456666655421          112


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH--hcCCeEEEEecCccCcc
Q 012238          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA--TRGMELLVAQSYSKNLG  307 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~S~SK~~~  307 (467)
                      ..++++....|++|.+.+   +++|+++|++||++||+||+|.....+.   ....+..+.  +..+.+|+++||||.+|
T Consensus       241 k~livve~v~s~~G~~~~---l~~I~~la~~~~~~livDEa~s~g~~G~---~G~g~~~~~~v~~~~~dI~~~SfSKs~g  314 (489)
T PLN02483        241 KIIVIVEGIYSMEGELCK---LPEIVAVCKKYKAYVYLDEAHSIGAVGK---TGRGVCELLGVDPADVDIMMGTFTKSFG  314 (489)
T ss_pred             eEEEEECCCCCCCCcccC---HHHHHHHHHHcCCEEEEECcCccCccCC---CCCchHHhcCCCcccCcEEEEecchhcc
Confidence            345555556799998765   5577777999999999999987433331   111111221  22356799999999999


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC---ccCCCchHHHHHHHHHh---CChhhHHHHHHHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP---MYSNPPVHGARIVANVV---GNPALFDEWKAEMEMMA  381 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~L---~~~~~~~~~~~~l~~~~  381 (467)
                      ++|   ||++   +++++++.            ++.....   ....++...+.+ ...|   ...+-    .+...+.+
T Consensus       315 ~~G---G~i~---~~~~li~~------------l~~~~~~~~~~~~~~p~~~~~~-~aaL~~l~~~~g----~~~~~~~~  371 (489)
T PLN02483        315 SCG---GYIA---GSKELIQY------------LKRTCPAHLYATSMSPPAVQQV-ISAIKVILGEDG----TNRGAQKL  371 (489)
T ss_pred             cCc---eEEE---cCHHHHHH------------HHHhCccccccCCcCHHHHHHH-HHHHHHHHhCcc----ccchHHHH
Confidence            887   9985   88888887            5544322   122233334333 2223   11100    01234567


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEec--CC---CHHHHHHHHHcccEEEeCC---------C--eEEec
Q 012238          382 GRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT--GL---NKAQSDNMTNKWHVYMTKD---------G--RISLA  445 (467)
Q Consensus       382 ~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~--~l---~~~~~~~ll~~~gI~v~~g---------g--Ris~~  445 (467)
                      ++++++++++.+.|+ ++|    +.+..+.++..+|+  ..   ..++.++|++ +||.+.+.         +  ||+++
T Consensus       372 ~~l~~~~~~l~~~L~-~~G----~~v~~~~~sp~~~l~l~~~~~~~~~~~~Ll~-~GI~v~~~~fp~~p~~~~~vRi~is  445 (489)
T PLN02483        372 AQIRENSNFFRSELQ-KMG----FEVLGDNDSPVMPIMLYNPAKIPAFSRECLK-QNVAVVVVGFPATPLLLARARICIS  445 (489)
T ss_pred             HHHHHHHHHHHHHHH-HCC----CcccCCCCCCEEEEEECCHHHHHHHHHHHHH-CCcEEeeeCCCCCCCCCceEEEEeC
Confidence            889999999999999 876    45544444434332  11   2356777776 59998742         2  88886


Q ss_pred             c-CChhhHHHHHHHHHHHHHhc
Q 012238          446 G-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       446 ~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                      . .+++++++++++|+++++.+
T Consensus       446 a~~t~edId~~l~~L~~~~~~~  467 (489)
T PLN02483        446 ASHSREDLIKALEVISEVGDLV  467 (489)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHh
Confidence            4 48899999999999987654

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.95  E-value=7.7e-25  Score=221.87  Aligned_cols=327  Identities=14%  Similarity=0.098  Sum_probs=217.4

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC------CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN------KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~------~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      .+.++|+.-.|   +++.. +|.+++++.+.++....      ..|.......+|++.+|+++..       ++.+++  
T Consensus        46 ~~~~~~~sn~y---l~l~~-~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~-------~~~i~~--  112 (410)
T PRK13392         46 RRVTIWCSNDY---LGMGQ-HPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGK-------ESALLF--  112 (410)
T ss_pred             ceEEEEECCCc---cCCCC-CHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCC-------CCEEEE--
Confidence            45788888665   34443 78888888887643210      1232233577899999999642       456666  


Q ss_pred             cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC-CCCcEEEEe
Q 012238          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-PGGSFILLH  235 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~-~~~~~~i~i  235 (467)
                      + +|+++...+...+....+||.|++..+.|..+...++..|+++..++.       .|++.+++.++.. .++++++++
T Consensus       113 ~-sG~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~t~~v~i  184 (410)
T PRK13392        113 T-SGYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRH-------NDLADLEEQLASVDPDRPKLIAF  184 (410)
T ss_pred             C-cHHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeC-------CCHHHHHHHHHhccCCCCEEEEE
Confidence            4 456666655222222348898888777777777778888988766643       2556666666543 247789999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe-EEEEecCccCcccCCCccc
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME-LLVAQSYSKNLGLYAERIG  314 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~~~~G~RiG  314 (467)
                      ++|+||||.+++   +++|.++|+++|+++|+||+|....++.. ..  .+.......++ .++++||||.||++|   |
T Consensus       185 ~~~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~-g~--g~~~~~~~~~~~div~~tlsK~~g~~G---G  255 (410)
T PRK13392        185 ESVYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGAR-GG--GIAERDGLMDRIDMIQGTLAKAFGCLG---G  255 (410)
T ss_pred             eCCCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcCCC-CC--chhhhccCCCCCcEEEEEChHhhhccc---c
Confidence            999999999988   55777779999999999999983333311 11  11111111122 388999999999988   8


Q ss_pred             eEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc--cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          315 AMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  392 (467)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~  392 (467)
                      |++   +++++++.            +++....+  ....+...+.++..+|+..       +.....+++++++++++.
T Consensus       256 ~~~---~~~~~~~~------------l~~~~~~~~~s~~~~~~~~~a~~aaL~~~-------~~~~~~~~~~~~~~~~l~  313 (410)
T PRK13392        256 YIA---ASADLIDF------------VRSFAPGFIFTTALPPAVAAGATAAIRHL-------KTSQTERDAHQDRVAALK  313 (410)
T ss_pred             hhh---cCHHHHHH------------HHHhCcchhccCcCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHH
Confidence            984   78888776            55444432  2234445666666666422       112345577888999999


Q ss_pred             HHhhhccCCCCCcccccCCcceE-EecCCC---HHHHHHHHHcccEEEeCC-------C----eEEecc-CChhhHHHHH
Q 012238          393 DSLSAKDKSGKDWSFILRQIGMF-SFTGLN---KAQSDNMTNKWHVYMTKD-------G----RISLAG-LSLAKCEYLA  456 (467)
Q Consensus       393 ~~l~~~~g~~~~~~~~~~~~g~f-~~~~l~---~~~~~~ll~~~gI~v~~g-------g----Ris~~~-~~~~~i~~~~  456 (467)
                      +.|+ ++|    +++.+++++++ ++++..   .++.++|++++||.+.+.       |    ||++.. .+++++++++
T Consensus       314 ~~L~-~~g----~~~~~~~~~~~~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~  388 (410)
T PRK13392        314 AKLN-ANG----IPVMPSPSHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALV  388 (410)
T ss_pred             HHHH-HcC----CCCCCCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHH
Confidence            9999 777    46666777765 455532   245667776679999763       2    888742 3789999999


Q ss_pred             HHHHHHHHhc
Q 012238          457 DAIIDSYHNV  466 (467)
Q Consensus       457 ~~l~~~l~~~  466 (467)
                      ++|+++++++
T Consensus       389 ~aL~~~~~~~  398 (410)
T PRK13392        389 AALVAIWDRL  398 (410)
T ss_pred             HHHHHHHHHc
Confidence            9999988754

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.95  E-value=4.2e-25  Score=218.18  Aligned_cols=306  Identities=16%  Similarity=0.041  Sum_probs=209.9

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEE
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI  182 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv  182 (467)
                      ++.+++++.+.... . ..|.+..+..++++.++++++        ++++++  +.||++++.++  +...+.+||+|++
T Consensus        11 ~~~v~~a~~~~~~~-~-~~~~~~~~~~~l~~~~a~~~g--------~~~~~~--~~~gt~a~~~~--~~~l~~~gd~v~~   76 (338)
T cd06502          11 TPEMLEAMAAANVG-D-DVYGEDPTTAKLEARAAELFG--------KEAALF--VPSGTAANQLA--LAAHTQPGGSVIC   76 (338)
T ss_pred             CHHHHHHHHhcccC-C-cccCCCHHHHHHHHHHHHHhC--------CCeEEE--ecCchHHHHHH--HHHhcCCCCeEEE
Confidence            78899988875432 2 367777889999999999964        235666  78889998887  3444679999999


Q ss_pred             cCCCCcchHH---HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC----CCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012238          183 SSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP----GGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (467)
Q Consensus       183 ~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~----~~~~~i~i~~p~NPTG~~~~~~~l~~l~  255 (467)
                      +.|+|..+..   ..+..|++++.++..  . +.+|++.+++.+++..    ++++++++++|+|| |.+++.+++++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~  152 (338)
T cd06502          77 HETAHIYTDEAGAPEFLSGVKLLPVPGE--N-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAIS  152 (338)
T ss_pred             ecCcceeeecCCcHHHHcCceEEeecCC--C-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHH
Confidence            9999875432   345689999999873  2 5799999999997421    36789999999998 6677999999999


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHH
Q 012238          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVI  335 (467)
Q Consensus       256 ~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~  335 (467)
                      ++|+++|+++|+||+|..+.......   .+... ..+.+ +++.|+||.++++|   |+++  ..++++++.       
T Consensus       153 ~~~~~~~~~livDea~~~~~~~~~~~---~~~~~-~~~~d-~~~~s~sK~~~~~~---g~~~--~~~~~~~~~-------  215 (338)
T cd06502         153 ALAKENGLPLHLDGARLANAAAALGV---ALKTY-KSGVD-SVSFCLSKGGGAPV---GAVV--VGNRDFIAR-------  215 (338)
T ss_pred             HHHHHcCCeEeechHHHHHHHHhcCC---CHHHH-HhcCC-EEEEeccccCCCcc---ceEE--ECCHHHHHH-------
Confidence            99999999999999975432111001   11122 12233 46889999999887   6543  477888777       


Q ss_pred             HHHHHHHhhccC--ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcc
Q 012238          336 QVKSQLKRLARP--MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIG  413 (467)
Q Consensus       336 ~~~~~l~~~~~~--~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g  413 (467)
                           +......  ...+.+.+.+.++...|++..+        .+..+++.++++++.+.|+ ++|.    .+.++.++
T Consensus       216 -----~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~--------~~~~~~~~~~~~~l~~~L~-~~~~----~~~~~~~~  277 (338)
T cd06502         216 -----ARRRRKQAGGGMRQSGFLAAAGLAALENDLW--------LRRLRHDHEMARRLAEALE-ELGG----LESEVQTN  277 (338)
T ss_pred             -----HHHHHHHhCCChhhHHHHHHHHHHHhcCchH--------HHHHHHHHHHHHHHHHHHH-hcCC----CcccccCC
Confidence                 4333221  1223455566666666765321        2344667777889999998 7763    45566666


Q ss_pred             eEEe-cCCCHHHHHHHHH------cccEEEeCCC----eEEeccC-ChhhHHHHHHHHHH
Q 012238          414 MFSF-TGLNKAQSDNMTN------KWHVYMTKDG----RISLAGL-SLAKCEYLADAIID  461 (467)
Q Consensus       414 ~f~~-~~l~~~~~~~ll~------~~gI~v~~gg----Ris~~~~-~~~~i~~~~~~l~~  461 (467)
                      ++++ ...+.....++.+      ++|+.+.+.+    ||+.+.. ++++++++++++++
T Consensus       278 ~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         278 IVLLDPVEANAVFVELSKEAIERRGEGVLFYAWGEGGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             eEEEecCCccHHHHHHHHHHHHhhhCCEEEEecCCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence            5433 2222233333332      4699887763    8887743 67899999998865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.94  E-value=1.7e-24  Score=217.69  Aligned_cols=323  Identities=15%  Similarity=0.093  Sum_probs=214.7

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-CC-CCcCCC----CcchHHHHHHHHHHHhCCCCcccccCceee
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-NKEYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~~-~~~Y~~----~~G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      .+.+.|||+.|.+.   ++++ +|.+.+++.+.+.. +. ...|..    ..-..++++++++++. .      ++.+++
T Consensus        37 ~g~~~id~~~~~~~---g~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~-~------~~~i~~  105 (385)
T PRK05958         37 DGRRMLNFASNDYL---GLAR-HPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG-A------ERALLF  105 (385)
T ss_pred             CCceEEEeeCCCcc---cCCC-CHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC-C------CcEEEE
Confidence            44689999998641   3322 67788888887743 10 111222    2235677888888753 1      444544


Q ss_pred             eecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEE
Q 012238          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILL  234 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~  234 (467)
                         .+|++++..+  +...+.+||+|+++.|+|+.+...++..|++++.++.       .|++.+++.++..++.+.+++
T Consensus       106 ---~~g~~~~~~~--l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~~~~~~~lvi  173 (385)
T PRK05958        106 ---SSGYAANLAV--LTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPH-------NDVDALEALLAKWRAGRALIV  173 (385)
T ss_pred             ---CcHHHHHHHH--HHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhccCCCeEEE
Confidence               5566666554  3344679999999999999999999999999888765       488999998875323467778


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH-HHhcCCeEEEEecCccCcccCCCcc
Q 012238          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL-FATRGMELLVAQSYSKNLGLYAERI  313 (467)
Q Consensus       235 i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~~~~G~Ri  313 (467)
                      +++++||||...+   +++|+++|++||+++|+||+|....++..  ....... .....++++++.|+||.++++|   
T Consensus       174 ~~~~~~~~G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~--g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G---  245 (385)
T PRK05958        174 TESVFSMDGDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQ--GRGLAAEAGLAGEPDVILVGTLGKALGSSG---  245 (385)
T ss_pred             EEecccCCCCcCC---HHHHHHHHHHhCCEEEEECcccccccCCC--CCchHHhhCCCCCCceEEEEechhhcccCC---
Confidence            8889999998766   55777889999999999999865444311  1111111 1223467899999999999777   


Q ss_pred             ceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc-c-CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012238          314 GAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM-Y-SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL  391 (467)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l  391 (467)
                      ||++   .++++.+.            +....... . .+.+...+.++..+|+..      .. .....+++.++++++
T Consensus       246 g~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~aa~~aal~~~------~~-~~~~~~~~~~~~~~l  303 (385)
T PRK05958        246 AAVL---GSETLIDY------------LINRARPFIFTTALPPAQAAAARAALRIL------RR-EPERRERLAALIARL  303 (385)
T ss_pred             cEEE---cCHHHHHH------------HHHhCccceecCCCCHHHHHHHHHHHHHH------hc-CHHHHHHHHHHHHHH
Confidence            8874   77777666            43322221 1 233444433444444311      11 135678888999999


Q ss_pred             HHHhhhccCCCCCcccccCCcceEEecCCC-----HHHHHHHHHcccEEEeCC-------C----eEEecc-CChhhHHH
Q 012238          392 FDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD-------G----RISLAG-LSLAKCEY  454 (467)
Q Consensus       392 ~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g-------g----Ris~~~-~~~~~i~~  454 (467)
                      .+.|+ +++    +++..+.++++ |+.+.     .++.+++.+ +||.+.++       |    ||+++. .+++++++
T Consensus       304 ~~~L~-~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~  376 (385)
T PRK05958        304 RAGLR-ALG----FQLMDSQSAIQ-PLIVGDNERALALAAALQE-QGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDR  376 (385)
T ss_pred             HHHHH-HcC----CCcCCCCCCEE-EEEeCCHHHHHHHHHHHHH-CCceEecccCCCCCCCCceEEEEecCCCCHHHHHH
Confidence            99999 776    45666666644 44331     244556654 69999752       2    999873 47899999


Q ss_pred             HHHHHHHHH
Q 012238          455 LADAIIDSY  463 (467)
Q Consensus       455 ~~~~l~~~l  463 (467)
                      ++++|++++
T Consensus       377 ~l~~l~~~~  385 (385)
T PRK05958        377 LLEALAEAL  385 (385)
T ss_pred             HHHHHHhcC
Confidence            999998763

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.94  E-value=6.6e-25  Score=221.99  Aligned_cols=328  Identities=15%  Similarity=0.188  Sum_probs=217.1

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC------CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG------ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~------~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      .+.|+|..|..       ++++.|++++...+...      ....|....+.+++++.+++++....|..  ..+|++  
T Consensus        19 ~~~~~~~~~~~-------~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~--~~~v~~--   87 (402)
T cd00378          19 RETLELIASEN-------FTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE--YANVQP--   87 (402)
T ss_pred             HhCeeeeccCC-------cCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC--ceeeec--
Confidence            36899987754       23788999987654211      12345566777888876554433322322  334544  


Q ss_pred             cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-----HhhCCCCeEEeeeecC-CCCCCChhhHHHHHHcCCCCc
Q 012238          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-----FNDARVPWSEYRYYDP-KTVGLDFEGMIADIKAAPGGS  230 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~-----~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~  230 (467)
                       .||++++.++  +...+.|||+|+++.|+|..+...     ++..|.++..+++..+ +++.+|++.+++.+.+  .++
T Consensus        88 -~sgt~a~~~~--l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~--~~~  162 (402)
T cd00378          88 -HSGSQANLAV--YFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALE--FKP  162 (402)
T ss_pred             -CCcHHHHHHH--HHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHh--CCC
Confidence             4678999887  455577999999999999876443     6677887777776433 2688999999999864  456


Q ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccC-CCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC
Q 012238          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY-QGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (467)
Q Consensus       231 ~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (467)
                      +++++++++||+.  .   ++++|+++|+++|+++|+|++| .++.+.+.  ....+    . +.+ ++++|+||.+  +
T Consensus       163 ~~v~~~~~~~~~~--~---~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~--~~~~~----~-~~d-v~~~s~sK~l--~  227 (402)
T cd00378         163 KLIVAGASAYPRP--I---DFKRFREIADEVGAYLLVDMAHVAGLVAGGV--FPNPL----P-GAD-VVTTTTHKTL--R  227 (402)
T ss_pred             CEEEecCcccCCC--c---CHHHHHHHHHhcCCEEEEEccchhhhhhccc--CCCcc----c-CCc-EEEeccccCC--C
Confidence            7888888888753  2   4678888999999999999994 55543221  01111    1 223 6899999977  7


Q ss_pred             CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCch-HHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238          310 AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPV-HGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  388 (467)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r  388 (467)
                      |+|.||++  +.++++++.            +.........+.+. ....++..++..  ..   .....+.++++++++
T Consensus       228 G~~gg~i~--~~~~~~~~~------------l~~~~~~~~~~~~~~~~~~a~~~al~~--~~---~~~~~~~~~~~~~~~  288 (402)
T cd00378         228 GPRGGLIL--TRKGELAKK------------INSAVFPGLQGGPHLHVIAAKAVALKE--AL---EPEFKAYAKQVVENA  288 (402)
T ss_pred             CCCceEEE--eccHHHHHH------------HHHHhCccccCCchHHHHHHHHHHHHH--Hh---hHHHHHHHHHHHHHH
Confidence            89999996  445477776            44433332222222 222222222211  10   113556778899999


Q ss_pred             HHHHHHhhhccCCCCCcccc-cCCcceEEecCC-----CHHHHHHHHHcccEEEeCC-------------C-eEEecc--
Q 012238          389 QKLFDSLSAKDKSGKDWSFI-LRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD-------------G-RISLAG--  446 (467)
Q Consensus       389 ~~l~~~l~~~~g~~~~~~~~-~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g-------------g-Ris~~~--  446 (467)
                      +++.+.|. +.|    +.+. .+.+++|+|+.+     +.+.+.++++++||.+.+.             + ||++..  
T Consensus       289 ~~l~~~L~-~~g----~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~  363 (402)
T cd00378         289 KALAEALK-ERG----FKVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMT  363 (402)
T ss_pred             HHHHHHHH-hCC----CeEeecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHH
Confidence            99999998 776    4444 456788898865     3455666778889999631             1 887654  


Q ss_pred             ---CChhhHHHHHHHHHHHHHh
Q 012238          447 ---LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       447 ---~~~~~i~~~~~~l~~~l~~  465 (467)
                         +++++++++++.|++++++
T Consensus       364 ~~~~~~~di~~~~~~l~~~~~~  385 (402)
T cd00378         364 TRGMGEEEMEEIADFIARALKD  385 (402)
T ss_pred             HhCCCHHHHHHHHHHHHHHHhc
Confidence               3579999999999998764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK02948 cysteine desulfurase; Provisional

Probab=99.94  E-value=7.1e-25  Score=220.17  Aligned_cols=325  Identities=13%  Similarity=0.032  Sum_probs=212.4

Q ss_pred             cCCCCCCCCchHHHHHHHHHHHhcCC---CCcCC----CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHH
Q 012238           93 YRTEELQPYVLDVVKKAENLMLERGE---NKEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (467)
Q Consensus        93 ~~d~~~~p~~~~~v~~a~~~~~~~~~---~~~Y~----~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~  165 (467)
                      |+|.++..++++.+.+++.+.+....   ...|.    ...-..++|+.++++++..      +++|++  ++|+++++.
T Consensus         3 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~------~~~i~~--~~g~t~a~~   74 (381)
T PRK02948          3 YLDYAATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGE------EQGIYF--TSGGTESNY   74 (381)
T ss_pred             eccCCCCCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCC------CCeEEE--eCcHHHHHH
Confidence            45666666668899999988774311   01110    0123568888999986543      678988  999999998


Q ss_pred             HHHHHHHH--hCCCCEEEEcCCCCc---chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          166 LAAALIER--YFPGAKVLISSPTWG---NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       166 l~~~~l~~--~~~gd~Vlv~~P~y~---~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      ++...+..  ..+||+|++..+.|+   .+...++..|++++.++++  .++.+|++.+++.++   ++++++++++|+|
T Consensus        75 ~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~---~~~~lv~~~~~~n  149 (381)
T PRK02948         75 LAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVD--KSGLIRLVDLERAIT---PDTVLASIQHANS  149 (381)
T ss_pred             HHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeC--CCCCCCHHHHHHhcC---CCCEEEEEECCcC
Confidence            86322211  147899999886555   4445567789999999984  346799999999886   5678999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      |||.+++.+   +|.++|+++|+++++|++ +.+.....  +   +    ......+++.|++|.+|++|  +|+++  .
T Consensus       150 ~tG~~~~~~---~I~~l~~~~~~~vivD~~-~~~g~~~~--~---~----~~~~~d~~~~s~~K~~gp~G--~G~l~--~  212 (381)
T PRK02948        150 EIGTIQPIA---EIGALLKKYNVLFHSDCV-QTFGKLPI--D---V----FEMGIDSLSVSAHKIYGPKG--VGAVY--I  212 (381)
T ss_pred             CcEeehhHH---HHHHHHHHcCCEEEEECh-hhcccccc--C---c----ccCCCCEEEecHHhcCCCCc--EEEEE--E
Confidence            999998865   677779999999999965 55543211  1   1    11235677899999999888  68886  2


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      .+......        +.............+++..++.++..++...      .+.+++.++++++.++++.+.|+ +++
T Consensus       213 ~~~~~~~~--------~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~  277 (381)
T PRK02948        213 NPQVRWKP--------VFPGTTHEKGFRPGTVNVPGIAAFLTAAENI------LKNMQEESLRFKELRSYFLEQIQ-TLP  277 (381)
T ss_pred             cCCCCCCC--------cccCCCCCCCcCCCCccHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            33211111        0000000001112345555656666555421      23366788999999999999999 876


Q ss_pred             CCCCcccccCC-cc-----e--EEecCCCHHHHHHHHHcccEEEeCC-------------------------C--eEEec
Q 012238          401 SGKDWSFILRQ-IG-----M--FSFTGLNKAQSDNMTNKWHVYMTKD-------------------------G--RISLA  445 (467)
Q Consensus       401 ~~~~~~~~~~~-~g-----~--f~~~~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ris~~  445 (467)
                      +    ++.... ..     .  |...+++.+.+...++++||.+..|                         +  |||++
T Consensus       278 ~----~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~  353 (381)
T PRK02948        278 L----PIEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFG  353 (381)
T ss_pred             C----CEEEeCCCccCcCCEEEEEeCCCCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcC
Confidence            3    322221 11     1  1112344444443456679999731                         2  99987


Q ss_pred             cC-ChhhHHHHHHHHHHHHHhc
Q 012238          446 GL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       446 ~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                      .. +++++++++++|+++++++
T Consensus       354 ~~~t~~di~~l~~~l~~~~~~~  375 (381)
T PRK02948        354 QQTTKDQIDTTIHALETIGNQF  375 (381)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Confidence            44 6799999999999988764

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.94  E-value=2.2e-24  Score=215.40  Aligned_cols=311  Identities=13%  Similarity=0.011  Sum_probs=203.4

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCC-------CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhC
Q 012238          103 LDVVKKAENLMLERGENKEYLP-------IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF  175 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~-------~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~  175 (467)
                      .+...+++.+.........+..       ..-..++++.+|+++..        +.+.+  ++|+++++.++  +...+.
T Consensus        21 ~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~--------~~~~i--~~g~~~a~~~~--~~~l~~   88 (370)
T TIGR02539        21 TEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGM--------DEARV--THGAREGKFAV--MHALCK   88 (370)
T ss_pred             cHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhCC--------CceEE--ECChHHHHHHH--HHHhhC
Confidence            6677777766643111011100       11356788899999643        24555  79999999987  444567


Q ss_pred             CCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC----CCcEEEEeCCCCCCCCCCCCHHHH
Q 012238          176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP----GGSFILLHGCAHNPTGIDPTPEQW  251 (467)
Q Consensus       176 ~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~----~~~~~i~i~~p~NPTG~~~~~~~l  251 (467)
                      +||+|++..+.|......++..|++++.++..++.++.+|++.+++.+++..    .+++++++++|+||||...+.+  
T Consensus        89 ~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~--  166 (370)
T TIGR02539        89 EGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAG--  166 (370)
T ss_pred             CCCEEEECCcccHHHHHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHH--
Confidence            9999999888855444678899999999997544568899999999986421    2567889999999999977755  


Q ss_pred             HHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhh
Q 012238          252 EKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCE  331 (467)
Q Consensus       252 ~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~  331 (467)
                       +|+++|+++|+++|+||+|.....+   .+.      ... ...++++|+||.++ +|.|+||++   .++++++.   
T Consensus       167 -~i~~la~~~~~~livDea~~~g~~~---~~~------~~~-~~di~v~s~sK~~~-~~g~~G~l~---~~~~~i~~---  228 (370)
T TIGR02539       167 -KVAKVCREKGVPLLLNCAYTVGRMP---VSA------KEI-GADFIVGSGHKSMA-ASGPCGVLG---MSEEWEDI---  228 (370)
T ss_pred             -HHHHHHHHcCCeEEEECccccCCcC---CCH------HHc-CCCEEEeeCccccc-CCCCEEEEE---ECHHHHhh---
Confidence             6667799999999999998764321   111      112 23466799999999 577899995   67888887   


Q ss_pred             hhHHHHHHHHHhhccCccC--------CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 012238          332 VAVIQVKSQLKRLARPMYS--------NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK  403 (467)
Q Consensus       332 ~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~  403 (467)
                               +.....++..        ......+.++..++.+      ..+.++...+.++. ++++.+.|+ ++|+  
T Consensus       229 ---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~------~~~~l~~~~~~~~~-~~~l~~~L~-~~g~--  289 (370)
T TIGR02539       229 ---------VLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPH------VVERVKRWDEEVKK-TRWFVAELE-DIGF--  289 (370)
T ss_pred             ---------hcccccCCccceeeeecccccccHHHHHHHHHHH------HHHHHHHHHHHHHH-HHHHHHHHH-hCCc--
Confidence                     5444332111        1111122222223321      12234444444444 457999998 8873  


Q ss_pred             Cccc--ccCCcceEEecCCC------------HHHHHHHHHcccEE-EeCCC----eEEeccCChhhHHHHHHHHHHHHH
Q 012238          404 DWSF--ILRQIGMFSFTGLN------------KAQSDNMTNKWHVY-MTKDG----RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       404 ~~~~--~~~~~g~f~~~~l~------------~~~~~~ll~~~gI~-v~~gg----Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                        +.  ..+..+.|+++...            ...+.+.|.++||. ++++.    ||++...+++++++++++|+++++
T Consensus       290 --~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~~~~~~iRis~~~~t~e~i~~l~~~L~~~~~  367 (370)
T TIGR02539       290 --IQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRSGQTKYFKLSVYGLTKEQVEYVVDSFEEIVE  367 (370)
T ss_pred             --EEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccCCcceEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence              43  22334556655321            12344445556997 77763    888644588999999999999987


Q ss_pred             hc
Q 012238          465 NV  466 (467)
Q Consensus       465 ~~  466 (467)
                      ++
T Consensus       368 ~~  369 (370)
T TIGR02539       368 EY  369 (370)
T ss_pred             hc
Confidence            64

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.94  E-value=3.1e-24  Score=217.21  Aligned_cols=335  Identities=13%  Similarity=0.065  Sum_probs=215.6

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCC----cCC----CCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK----EYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~----~Y~----~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (467)
                      +++-|..+      +..++++.+.+++.+.+......    .|.    ...-.+++|+++|++++..     ++++|++ 
T Consensus        23 ~~iYld~a------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-----~~~~v~~-   90 (406)
T PRK09295         23 PLAYLDSA------ASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINAR-----SAEELVF-   90 (406)
T ss_pred             ceEEEeCc------ccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcC-----CCCeEEE-
Confidence            34555544      44455888999988877431101    110    0123678999999997542     2678999 


Q ss_pred             ecCCchhHHHHHHHHHH--HhCCCCEEEEcCCCCcc----hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCC
Q 012238          156 QGLSGTGSLRLAAALIE--RYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~--~~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (467)
                       |.|+|+++++++..+.  .+.+||+|+++++.|+.    |...++..|++++.++.+  .++.+|++.+++.++   ++
T Consensus        91 -t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~---~~  164 (406)
T PRK09295         91 -VRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLN--PDGTLQLETLPALFD---ER  164 (406)
T ss_pred             -eCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecC--CCCCCCHHHHHHhcC---CC
Confidence             9999999998743321  34689999999988753    455667889999999884  356789999999887   57


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC
Q 012238          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (467)
                      ++++++++++||||.+++.+   +|+++|+++|+++++|++|..... ..  +   +    ......+++.|++|.+|++
T Consensus       165 t~lv~l~~~~n~tG~~~~~~---~i~~~~~~~~~~vivD~a~~~g~~-~~--~---~----~~~~~D~~~~s~~K~~gp~  231 (406)
T PRK09295        165 TRLLAITHVSNVLGTENPLA---EMIALAHQHGAKVLVDGAQAVMHH-PV--D---V----QALDCDFYVFSGHKLYGPT  231 (406)
T ss_pred             cEEEEEecchhcccccCCHH---HHHHHHHHcCCEEEEEcccccCcc-cc--C---c----hhcCCCEEEeehhhccCCC
Confidence            88999999999999999865   677779999999999999754322 11  1   1    1112357789999999977


Q ss_pred             CCccceEEEecCCHHHHhhhhhhhHHH--HHH--HHHh-------hccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          310 AERIGAMNVVCSSSDLAARCCEVAVIQ--VKS--QLKR-------LARPMYSNPPVHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~--~~~--~l~~-------~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                      |  +||++   .++++++.. ++-.+.  ...  ....       ..+.....++..+..++..+++.   ..  +..++
T Consensus       232 G--~G~l~---~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~---~~--~~g~~  300 (406)
T PRK09295        232 G--IGILY---VKEALLQEM-PPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDY---VS--ALGLN  300 (406)
T ss_pred             C--cEEEE---EchHhHhhC-CCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHH---HH--HhCHH
Confidence            7  69986   455555430 000000  000  0000       00011112333333333333321   10  11356


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccC--CcceEEec--CCCHHHHHHHHHcccEEEeCC--------------C
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR--QIGMFSFT--GLNKAQSDNMTNKWHVYMTKD--------------G  440 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~--~~g~f~~~--~l~~~~~~~ll~~~gI~v~~g--------------g  440 (467)
                      .+.++.++.++++.+.|. +++.   ++...+  ..+++.|.  +.+.+.+...|+++||.+..|              |
T Consensus       301 ~i~~~~~~l~~~l~~~l~-~~~~---~~~~~~~~~~~iv~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~  376 (406)
T PRK09295        301 NIAEYEQNLMHYALSQLE-SVPD---LTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPA  376 (406)
T ss_pred             HHHHHHHHHHHHHHHHHh-cCCC---EEEeCCCCCceEEEEEECCcCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCC
Confidence            677888888899999987 6531   344433  24555442  445555555677889999764              2


Q ss_pred             --eEEeccC-ChhhHHHHHHHHHHHHH
Q 012238          441 --RISLAGL-SLAKCEYLADAIIDSYH  464 (467)
Q Consensus       441 --Ris~~~~-~~~~i~~~~~~l~~~l~  464 (467)
                        |||++.. +++|+++++++|+++..
T Consensus       377 ~iRiS~~~ynt~~did~l~~~l~~i~~  403 (406)
T PRK09295        377 MCRASLAMYNTHEEVDRLVAGLQRIHR  403 (406)
T ss_pred             EEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence              9998765 56899999999998754

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.94  E-value=4.8e-24  Score=211.56  Aligned_cols=319  Identities=17%  Similarity=0.097  Sum_probs=209.7

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--CcC----CCCcchHHHHHHHHHHHhCCCCcccccCceeeeec
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEY----LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~~Y----~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (467)
                      .+++|+...|   -|.+. +|.|.+++.+.++....  ..|    .......++++.+++++..       ++. ++  +
T Consensus         2 ~~~~~~~~~~---~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-------~~~-iv--~   67 (349)
T cd06454           2 KVLNFCSNDY---LGLAN-HPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK-------EAA-LV--F   67 (349)
T ss_pred             CceecccCCc---cccCC-CHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC-------CCE-EE--e
Confidence            3567776655   24454 57899999998854210  112    2234457888888888642       233 44  4


Q ss_pred             CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC--CCCcEEEEe
Q 012238          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA--PGGSFILLH  235 (467)
Q Consensus       158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~--~~~~~~i~i  235 (467)
                      .+|++++..+  +...+.+||+|+++.|+|..+...++..|++++.++.       +|++.+++.+++.  +.+++++++
T Consensus        68 ~sg~~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~~le~~i~~~~~~~~~~~v~~  138 (349)
T cd06454          68 SSGYAANDGV--LSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKH-------NDMEDLEKLLREARRPYGKKLIVT  138 (349)
T ss_pred             ccHHHHHHHH--HHHhcCCCCEEEEehhhhHHHHHHHHHcCCceEEecC-------CCHHHHHHHHHHhhccCCCeEEEE
Confidence            6667777765  3445679999999999999998888999999887753       5778888888753  246788889


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH-HhcCCeEEEEecCccCcccCCCccc
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF-ATRGMELLVAQSYSKNLGLYAERIG  314 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~~~G~RiG  314 (467)
                      ++++||||...+   +++|+++|+++|+++|+|++|.....+.   ........ ......+++++|+||.++++|   |
T Consensus       139 ~~~~~~tG~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~~---~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G  209 (349)
T cd06454         139 EGVYSMDGDIAP---LPELVDLAKKYGAILFVDEAHSVGVYGP---HGRGVEEFGGLTDDVDIIMGTLGKAFGAVG---G  209 (349)
T ss_pred             eccccCCCCccC---HHHHHHHHHHcCCEEEEEccccccccCC---CCCChhhhccccccCcEEEeechhhhcccC---C
Confidence            999999999876   4577788999999999999986432221   10011111 122346799999999998755   8


Q ss_pred             eEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc--cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          315 AMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  392 (467)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~  392 (467)
                      |++   .++++.+.            +.......  ....+...+.++...|+..      .+ ....+++++++++.+.
T Consensus       210 ~i~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~-~~~~~~~~~~~~~~l~  267 (349)
T cd06454         210 YIA---GSKELIDY------------LRSYARGFIFSTSLPPAVAAAALAALEVL------QG-GPERRERLQENVRYLR  267 (349)
T ss_pred             EEE---CCHHHHHH------------HHHhchhhhccCCCCHHHHHHHHHHHHHH------hc-CHHHHHHHHHHHHHHH
Confidence            885   67777766            33322211  1233344444444444211      11 3466788899999999


Q ss_pred             HHhhhccCCCCCcccccCCcceEEec-C---CC-HHHHHHHHHcccEEEeCC---------C--eEEecc-CChhhHHHH
Q 012238          393 DSLSAKDKSGKDWSFILRQIGMFSFT-G---LN-KAQSDNMTNKWHVYMTKD---------G--RISLAG-LSLAKCEYL  455 (467)
Q Consensus       393 ~~l~~~~g~~~~~~~~~~~~g~f~~~-~---l~-~~~~~~ll~~~gI~v~~g---------g--Ris~~~-~~~~~i~~~  455 (467)
                      +.|. ++|    +....+.++++.+. .   .+ .++.+.++++ ||.+.++         +  ||+++. .++++++++
T Consensus       268 ~~l~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~  341 (349)
T cd06454         268 RGLK-ELG----FPVGGSPSHIIPPLIGDDPAKAVAFSDALLER-GIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRL  341 (349)
T ss_pred             HHHH-hcC----CcccCCCCCcEEEEeCCChHHHHHHHHHHHhC-CceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHH
Confidence            9998 776    34444444444332 1   12 2345566554 9998752         2  898874 478999999


Q ss_pred             HHHHHHH
Q 012238          456 ADAIIDS  462 (467)
Q Consensus       456 ~~~l~~~  462 (467)
                      +++|+++
T Consensus       342 ~~~l~~~  348 (349)
T cd06454         342 LEALKEV  348 (349)
T ss_pred             HHHHHHh
Confidence            9999864

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.94  E-value=6.8e-24  Score=214.70  Aligned_cols=326  Identities=14%  Similarity=0.089  Sum_probs=218.7

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--C--cCC----CCcchHHHHHHHHHHHhCCCCcccccCceee
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--K--EYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~--~Y~----~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      .+++-|..|..    +  ++++.+.+++.+.+.....  .  .+.    ...+++++|+.++++++..     .+++|++
T Consensus        17 ~~~~yld~~~~----~--~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~-----~~~~v~~   85 (403)
T TIGR01979        17 KPLVYLDSAAT----S--QKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAA-----SDEEIVF   85 (403)
T ss_pred             CceEEEeCccc----c--CCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcC-----CCCeEEE
Confidence            35677776654    3  3478888888877643110  1  111    1235779999999997543     1468988


Q ss_pred             eecCCchhHHHHHHHHHH--HhCCCCEEEEcCCCCcc----hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCC
Q 012238          155 VQGLSGTGSLRLAAALIE--RYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~--~~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~  228 (467)
                        |.|+++++.+++..+.  .+.+||+|+++++.|+.    +...++..|++++.++.+  +++.+|++.+++.+.   +
T Consensus        86 --~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~i~---~  158 (403)
T TIGR01979        86 --TRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD--DDGTLDLDDLEKLLT---E  158 (403)
T ss_pred             --eCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC--CCCCCCHHHHHHHhc---c
Confidence              9999999998743322  24689999999998764    445666789999999884  456799999999987   5


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc
Q 012238          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (467)
                      +++++++++++||||..++.+   +|.++|+++|+++|+|++|..... .  .+   +    ......+++.|++|.+|+
T Consensus       159 ~~~lv~~~~~~~~tG~~~~~~---~i~~~~~~~~~~~ivD~a~~~g~~-~--~~---~----~~~~~d~~~~s~~K~~gp  225 (403)
T TIGR01979       159 KTKLVAITHVSNVLGTVNPVE---EIAKLAHQVGAKVLVDGAQAVPHM-P--VD---V----QALDCDFYVFSGHKMYGP  225 (403)
T ss_pred             CCeEEEEEcccccccccCCHH---HHHHHHHHcCCEEEEEchhhcCcc-c--cC---c----cccCCCEEEEecccccCC
Confidence            788999999999999999955   677779999999999999753221 1  11   1    111345889999999987


Q ss_pred             CCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc---------------------cCccCCCchHHHHHHHHHhCCh
Q 012238          309 YAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA---------------------RPMYSNPPVHGARIVANVVGNP  367 (467)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~---------------------~~~~~~~~~~~~~~~~~~L~~~  367 (467)
                      +|  +|+++   .++++++.            +....                     +.....++.....++..+++  
T Consensus       226 ~G--~g~l~---~~~~~~~~------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~--  286 (403)
T TIGR01979       226 TG--IGVLY---GKEELLEQ------------MPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAID--  286 (403)
T ss_pred             CC--ceEEE---EchHHHhc------------CCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHH--
Confidence            77  78885   45565554            21110                     00011233333333333331  


Q ss_pred             hhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC-----cceEEec--CCCHHHHHHHHHcccEEEeCC
Q 012238          368 ALFDEWKA-EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ-----IGMFSFT--GLNKAQSDNMTNKWHVYMTKD  439 (467)
Q Consensus       368 ~~~~~~~~-~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~-----~g~f~~~--~l~~~~~~~ll~~~gI~v~~g  439 (467)
                       +   +.+ ..++.+++..+.++.+.+.|+ .++   ++++..+.     ++++.|.  +.+.+.+.+.++++||.+.+|
T Consensus       287 -~---~~~~g~~~~~~~~~~l~~~l~~~l~-~~~---g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~g  358 (403)
T TIGR01979       287 -Y---LEAIGLENIEAHEHELTAYALERLG-EIP---GLRIYGPRDAEDRGGIISFNVEGVHPHDVGTILDEEGIAVRSG  358 (403)
T ss_pred             -H---HHHhCHHHHHHHHHHHHHHHHHHHh-cCC---CEEEeCCCCccccCceEEEEeCCcCHHHHHHHHhhCCEEEcch
Confidence             1   111 245677888888999999888 653   15555443     5554443  445555566677789998753


Q ss_pred             --------------C--eEEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238          440 --------------G--RISLAGL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 --------------g--Ris~~~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                                    |  |||++.. +++++++++++|+++++.+
T Consensus       359 ~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~  402 (403)
T TIGR01979       359 HHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF  402 (403)
T ss_pred             hhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence                          2  9998754 6689999999999988765

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.93  E-value=3.7e-24  Score=201.86  Aligned_cols=314  Identities=19%  Similarity=0.149  Sum_probs=203.6

Q ss_pred             CcC-CCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh---C-C----------CCEEEEcC
Q 012238          120 KEY-LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY---F-P----------GAKVLISS  184 (467)
Q Consensus       120 ~~Y-~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~---~-~----------gd~Vlv~~  184 (467)
                      .+| +...|++++|+.+|+.|.-.      +++|++    ||+.+++++..++...   . +          .-+.++|.
T Consensus        62 RNY~G~l~Gipe~r~l~a~llgv~------~~~viv----~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPv  131 (425)
T PF12897_consen   62 RNYPGGLDGIPEARELFAELLGVP------PENVIV----GGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPV  131 (425)
T ss_dssp             TSS-S-SS--HHHHHHHHHHHTS-------GGGEEE-----SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEE
T ss_pred             cCCCCccCChHHHHHHHHHHhCCC------HHHEEE----eccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecC
Confidence            679 88999999999999998654      788854    5666677654443321   0 1          13789999


Q ss_pred             CCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH-HHhcCC
Q 012238          185 PTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV-IQEKNH  263 (467)
Q Consensus       185 P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~-~~~~~~  263 (467)
                      |+|..+..+++.+|++.+.||+.++   |+|+|.+++.+.+.+..+-+.+++..+||||++|+.|..++|+++ +...+.
T Consensus       132 PGYDRHFai~E~~Giemi~VpM~~d---GPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DF  208 (425)
T PF12897_consen  132 PGYDRHFAITEHFGIEMIPVPMTED---GPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDF  208 (425)
T ss_dssp             S--HHHHHHHHHCT-EEEEEEEETT---EE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-
T ss_pred             CCchHHHHHHHhhCcEEEecCCCCC---CCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCe
Confidence            9999999999999999999999743   699999999998766666788888899999999999999999988 345899


Q ss_pred             eeEEeccCCCCCC-CCCCCCh-hHHHHHH---hcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHH
Q 012238          264 IPFFDVAYQGFAS-GSLDNDA-SSVRLFA---TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVK  338 (467)
Q Consensus       264 ~li~Deay~~~~~-~~~~~~~-~~~~~~~---~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~  338 (467)
                      .|+.|++|.-... ++.+.+. ..+....   ...++++...|.||.- .||-+++++.   ++++.++.          
T Consensus       209 RI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT-f~GaGva~~a---aS~~Nl~~----------  274 (425)
T PF12897_consen  209 RIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT-FPGAGVAFFA---ASEANLAW----------  274 (425)
T ss_dssp             EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS-EEEE---E-HHHHHH----------
T ss_pred             EEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc-cCCcceeeee---cCHHHHHH----------
Confidence            9999999974433 2111111 1222222   2346999999999976 5999999994   88888887          


Q ss_pred             HHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceEEe
Q 012238          339 SQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSF  417 (467)
Q Consensus       339 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~~  417 (467)
                        +++.......++.-+.|..-..++.+.+  ...++++++.++.++-+.+.+.+.|.++++ ..+--++..|.||||++
T Consensus       275 --~~~~~~~~tIgpdKvNQLRHvrff~d~~--gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIs  350 (425)
T PF12897_consen  275 --IKKHLSVQTIGPDKVNQLRHVRFFKDAE--GGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFIS  350 (425)
T ss_dssp             --HHHHHHHH-S---HHHHHHHHHHHHSHH--THHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EE
T ss_pred             --HHHHhcCceeCccHHHHHHHHHHhcChh--hHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEE
Confidence              4433343456778888888888887642  122567888888888888888888875666 22224677899999998


Q ss_pred             cCC---CHHHHHHHHHcccEEEeCCC--------------eEEeccCChhhHHHHHHHHHHHHH
Q 012238          418 TGL---NKAQSDNMTNKWHVYMTKDG--------------RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       418 ~~l---~~~~~~~ll~~~gI~v~~gg--------------Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                      ++.   +.+.+-++.++.||.++|.|              ||+.+..+.++++.+++.+.-+++
T Consensus       351 ld~~~G~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~  414 (425)
T PF12897_consen  351 LDVLDGTAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVK  414 (425)
T ss_dssp             EEESTT-HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHH
T ss_pred             EecCCChHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            854   55667778888999999954              999887788999999998877765

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.93  E-value=8.7e-24  Score=212.72  Aligned_cols=337  Identities=12%  Similarity=0.055  Sum_probs=214.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +...+||..|..-..-|.  -.|.+.+++.+.++....  ..| ......++.+.++++.    +    .+++++  ++|
T Consensus        30 G~~~lD~~~g~~~~~lGh--~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~----~----~~~v~~--~~s   96 (389)
T PRK01278         30 GERYLDFASGIAVNSLGH--AHPHLVEALKEQAEKLWHVSNLY-RIPEQERLAERLVENS----F----ADKVFF--TNS   96 (389)
T ss_pred             CCEEEECCccHhhccCCC--CCHHHHHHHHHHHHhcCcccccc-CChHHHHHHHHHHhhC----C----CCEEEE--cCC
Confidence            457899988754222243  367888888887754211  112 2223334444444442    1    358888  999


Q ss_pred             chhHHHHHHHHHHH--hCCCC----EEEEcCCCCcchHHHHhhCCCCeEEeeeec--CCCCC----CChhhHHHHHHcCC
Q 012238          160 GTGSLRLAAALIER--YFPGA----KVLISSPTWGNHKNIFNDARVPWSEYRYYD--PKTVG----LDFEGMIADIKAAP  227 (467)
Q Consensus       160 gt~al~l~~~~l~~--~~~gd----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~--~~~~~----~d~~~l~~~l~~~~  227 (467)
                      |++|++.+.++...  ..+||    +|++.+++|..+.......+......+...  ..++.    .|++.+++.++   
T Consensus        97 GseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---  173 (389)
T PRK01278         97 GAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAIT---  173 (389)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhC---
Confidence            99999998554433  23676    999999999988766655444332221100  11111    58999999886   


Q ss_pred             CCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc
Q 012238          228 GGSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (467)
Q Consensus       228 ~~~~~i~i~~p~NPTG-~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (467)
                      ++++++++..++||+| ..++.+.+++|.++|++||+++|+||+|.++...+.   .... ......++   +.+|||.+
T Consensus       174 ~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~-~~~~~~pd---i~t~sK~l  246 (389)
T PRK01278        174 PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK---LFAH-EWAGVTPD---IMAVAKGI  246 (389)
T ss_pred             CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc---ceee-cccCCCCC---EEEEehhc
Confidence            4678888888899999 788999999999999999999999999998865321   1111 01111122   35899999


Q ss_pred             ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012238          307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  386 (467)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~  386 (467)
                      + +|+|+||++   +++++++.            +.......+.+.+.+.|.++...|+.-. .+.+.+.++++.+++++
T Consensus       247 ~-~G~~ig~~~---~~~~~~~~------------~~~~~~~~t~~~~~~~~aaa~a~l~~l~-~~~~~~~~~~~~~~l~~  309 (389)
T PRK01278        247 G-GGFPLGACL---ATEEAAKG------------MTPGTHGSTYGGNPLAMAVGNAVLDVIL-APGFLDNVQRMGLYLKQ  309 (389)
T ss_pred             c-CCcceEEEE---EcHHHHhc------------cCCCCCCCCCCccHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHH
Confidence            9 899999995   67777766            5444444444677777877766653210 11122334455555544


Q ss_pred             HHHHHHHHhhhccCCCCCcccccCCcceEEecCC---CHHHHHHHHHcccEEEeCCC----eEEecc-CChhhHHHHHHH
Q 012238          387 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEYLADA  458 (467)
Q Consensus       387 ~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~~~i~~~~~~  458 (467)
                      +.+.+.+    ..+  .-+....+ .|+++|+.+   +.+++++++++ ||.+.|++    ||+++. .+++++++++++
T Consensus       310 ~l~~l~~----~~~--~~~~~v~g-~G~~~~i~~~~~~~~~~~~l~~~-GV~~~p~~~~~lR~~p~~~~~~~~i~~~l~~  381 (389)
T PRK01278        310 KLEGLVD----RFP--DVIEEVRG-KGLLLGLKCVVPNRDLVQALRDE-GLLTVGAGDNVVRLLPPLIITEEEIDEALER  381 (389)
T ss_pred             HHHHHHh----hCC--CceeeEec-ccEEEEEEEecCHHHHHHHHHHC-CeEEeecCCCEEEEeCCcccCHHHHHHHHHH
Confidence            4443322    221  00222334 456666543   34567777775 99999875    888642 488999999999


Q ss_pred             HHHHHHhc
Q 012238          459 IIDSYHNV  466 (467)
Q Consensus       459 l~~~l~~~  466 (467)
                      |+++++++
T Consensus       382 l~~~l~~~  389 (389)
T PRK01278        382 LERAAESL  389 (389)
T ss_pred             HHHHHHhC
Confidence            99998764

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.93  E-value=1.2e-23  Score=212.41  Aligned_cols=328  Identities=13%  Similarity=0.050  Sum_probs=215.6

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.|||..|..-+.-+.  .+|.+.+++.+.+...  ....|....+ .++.+.+++++...     .++++++  ++|
T Consensus        42 g~~~lD~~s~~~~~~lG~--~~p~v~~ai~~~~~~~~~~~~~~~~~~~-~~la~~l~~~~~~~-----~~~~v~~--~~s  111 (398)
T PRK03244         42 GKEYLDLLGGIAVNALGH--AHPAVVEAVTRQLATLGHVSNLFATEPQ-IALAERLVELLGAP-----EGGRVFF--CNS  111 (398)
T ss_pred             CCEEEECCcCHhhccCCC--CCHHHHHHHHHHHHhccCccCccCCHHH-HHHHHHHHHhCCCC-----CCCEEEE--eCc
Confidence            457899998865222232  2678888888877542  1134643333 46666777664211     2468988  999


Q ss_pred             chhHHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHh-hCCC------------CeEEeeeecCCCCCCChhhHHHHHHc
Q 012238          160 GTGSLRLAAALIERYFPG-AKVLISSPTWGNHKNIFN-DARV------------PWSEYRYYDPKTVGLDFEGMIADIKA  225 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~g-d~Vlv~~P~y~~~~~~~~-~~G~------------~~~~v~~~~~~~~~~d~~~l~~~l~~  225 (467)
                      |++++..+.++...  +| ++|+..+++|..+..... ..|.            ++..+|.       .|++.+++.+. 
T Consensus       112 gsea~~~al~~~~~--~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~-  181 (398)
T PRK03244        112 GAEANEAAFKLARL--TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------GDVDALAAAVD-  181 (398)
T ss_pred             hHHHHHHHHHHHHH--HCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------CCHHHHHHhhc-
Confidence            99999998554332  44 578888889987744333 2221            1222222       37889988885 


Q ss_pred             CCCCcEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCcc
Q 012238          226 APGGSFILLHGCAHNPTGIDPTPEQ-WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (467)
Q Consensus       226 ~~~~~~~i~i~~p~NPTG~~~~~~~-l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  304 (467)
                        +++.++++.+++||||.+++.++ +++|.++|++||+++|+||+|.++...+   ..+.. ......+++   .+|||
T Consensus       182 --~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g---~~~~~-~~~~~~pDi---~t~sK  252 (398)
T PRK03244        182 --DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTG---AWFAH-QHDGVTPDV---VTLAK  252 (398)
T ss_pred             --CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccc---hHHhh-hhhCCCCCE---EEEch
Confidence              46778888999999999997655 9999999999999999999998875432   11111 111222343   37899


Q ss_pred             CcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012238          305 NLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  384 (467)
Q Consensus       305 ~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~  384 (467)
                      .++ +|+|+||++   .++++++.            +.........+.+.+++.++...|+.-      .  -++..+++
T Consensus       253 ~l~-~G~~ig~~~---~~~~~~~~------------~~~~~~~~t~~~~~~~~aaa~a~l~~~------~--~~~~~~~~  308 (398)
T PRK03244        253 GLG-GGLPIGACL---AFGPAADL------------LTPGLHGSTFGGNPVACAAALAVLDTI------A--SEGLLENA  308 (398)
T ss_pred             hhh-CCcccEEEE---EcHHHHhh------------ccCCCCcCCCCCCHHHHHHHHHHHHHH------H--hccHHHHH
Confidence            999 899999996   66777776            443323334456677777777765411      1  11345666


Q ss_pred             HHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC----HHHHHHHHHcccEEEeCCC----eEEecc-CChhhHHHH
Q 012238          385 KNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----KAQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEYL  455 (467)
Q Consensus       385 ~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~----~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~~~i~~~  455 (467)
                      +++++++.+.|+ +++.+. +.... ..|.++|+.+.    .++.+++++ +||.+.+.+    ||+++. .++++++++
T Consensus       309 ~~~~~~l~~~L~-~~~~~~-~~~v~-g~g~~~~i~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~iR~~p~~~~t~~~i~~~  384 (398)
T PRK03244        309 ERLGEQLRAGIE-ALGHPL-VDHVR-GRGLLLGIVLTAPVAKAVEAAARE-AGFLVNAVAPDVIRLAPPLIITDAQVDAF  384 (398)
T ss_pred             HHHHHHHHHHHH-hcCCCc-eeeEe-eccEEEEEEEeccHHHHHHHHHHH-CCeEEeecCCCEEEEECCCcCCHHHHHHH
Confidence            677788888888 765321 11222 35667777552    234455554 699998754    888665 588999999


Q ss_pred             HHHHHHHHHhc
Q 012238          456 ADAIIDSYHNV  466 (467)
Q Consensus       456 ~~~l~~~l~~~  466 (467)
                      +++|+++++++
T Consensus       385 ~~~l~~~l~~~  395 (398)
T PRK03244        385 VAALPAILDAA  395 (398)
T ss_pred             HHHHHHHHHhc
Confidence            99999998764

>PRK07049 methionine gamma-lyase; Validated

Probab=99.93  E-value=2.4e-23  Score=210.31  Aligned_cols=221  Identities=18%  Similarity=0.161  Sum_probs=167.0

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~  199 (467)
                      +......|++++|++..        .+++++  +.||++++.++  +...+.+||+|+++.|+|+.+...+    +..|+
T Consensus        81 ~~Pt~~~Le~~lA~leg--------~~~~iv--~~sG~~Ai~~~--l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi  148 (427)
T PRK07049         81 NHPNSEIVEDRLAVYEG--------AESAAL--FSSGMSAIATT--LLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGV  148 (427)
T ss_pred             CCcCHHHHHHHHHHHhC--------CCcEEE--EccHHHHHHHH--HHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCc
Confidence            55667899999999953        235666  79999998887  5567789999999999999997664    56788


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcC--CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh---cCCeeEEeccCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAA--PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE---KNHIPFFDVAYQGF  274 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~--~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~---~~~~li~Deay~~~  274 (467)
                      +++.++.      ..|++.+++.+.+.  .++++++++++|+||||.+++.+++.+|++.|++   +++++|+||+|...
T Consensus       149 ~~v~~~~------~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~  222 (427)
T PRK07049        149 GAVGFAD------GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGP  222 (427)
T ss_pred             EEEEEeC------CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcccc
Confidence            8776652      25778888777532  2468899999999999999999999999888654   68999999998765


Q ss_pred             CCCCCCCChhHHHHHHhcCCeEEEEecCccCcc-cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCc
Q 012238          275 ASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPP  353 (467)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  353 (467)
                      ...    .  ++    .. ...+++.|+||.++ .+|+|+||++   +++++++.            +.........+.+
T Consensus       223 ~~~----~--pl----~~-g~divv~S~SK~~gG~~glr~G~vv---~~~~l~~~------------l~~~~~~~g~~ls  276 (427)
T PRK07049        223 VFQ----K--PL----EH-GADLSVYSLTKYVGGHSDLVAGAVL---GRKALIRQ------------VRALRSAIGTQLD  276 (427)
T ss_pred             ccC----C--cc----cc-CCCEEEEcCceeecCCCCcEEEEEE---CCHHHHHH------------HHHHHHhcCCCCC
Confidence            431    1  11    11 34688999999999 6999999995   77888777            5555555555677


Q ss_pred             hHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          354 VHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       354 ~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                      ...+.++...|..          +..+.++..++++.+.+.|+ +.
T Consensus       277 ~~~a~l~~r~L~t----------l~~R~~~~~~~a~~la~~L~-~~  311 (427)
T PRK07049        277 PHSCWMLGRSLET----------LVLRMERANRNARAVAEFLR-DH  311 (427)
T ss_pred             HHHHHHHHcCCCh----------HHHHHHHHHHHHHHHHHHHH-hC
Confidence            7777777665542          33445666888888998888 54

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.93  E-value=1.6e-23  Score=213.08  Aligned_cols=326  Identities=15%  Similarity=0.099  Sum_probs=214.0

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC-----CcCCC---CcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-----KEYLP---IEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~-----~~Y~~---~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (467)
                      +++.|..+..    +  +.++.+.+++.+.+.....     ..|..   ....+++|+.++++++..     ++++|++ 
T Consensus        32 ~~iyLd~a~~----~--~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-----~~~~v~~-   99 (424)
T PLN02855         32 KLVYLDNAAT----S--QKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINAS-----TSREIVF-   99 (424)
T ss_pred             CeEEeeCccc----c--CCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCC-----CCCEEEE-
Confidence            4677776654    3  3478889998887643110     11111   123578999999997653     1578999 


Q ss_pred             ecCCchhHHHHHHHHHH--HhCCCCEEEEcCCCCcc----hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCC
Q 012238          156 QGLSGTGSLRLAAALIE--RYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~--~~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (467)
                       |.|+|+++++++..+.  .+.+||+|+++.+.|+.    |...++..|++++.++++  .++.+|++.+++.++   ++
T Consensus       100 -t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~--~~~~~~~~~l~~~i~---~~  173 (424)
T PLN02855        100 -TRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLT--PDEVLDVEQLKELLS---EK  173 (424)
T ss_pred             -eCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHHhc---cC
Confidence             9999999999743321  35689999999997763    455667889999999884  234599999999997   57


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC
Q 012238          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (467)
                      ++++++++++||||.+++.+   +|+++|+++|+++++|++|.. ....  .+   +    ......+++.|++|.+|++
T Consensus       174 t~lv~i~~~~n~tG~~~~~~---~I~~l~~~~g~~vivD~a~~~-g~~~--~~---~----~~~~~d~~~~s~~K~~gp~  240 (424)
T PLN02855        174 TKLVATHHVSNVLGSILPVE---DIVHWAHAVGAKVLVDACQSV-PHMP--VD---V----QTLGADFLVASSHKMCGPT  240 (424)
T ss_pred             ceEEEEeCccccccccCCHH---HHHHHHHHcCCEEEEEhhhhc-CCcC--CC---c----hhcCCCEEEeecccccCCC
Confidence            88999999999999999976   667779999999999999742 1111  11   1    1112346799999988876


Q ss_pred             CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc--------------------cCccCCCchHHH-HHHHHHhCChh
Q 012238          310 AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA--------------------RPMYSNPPVHGA-RIVANVVGNPA  368 (467)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~--------------------~~~~~~~~~~~~-~~~~~~L~~~~  368 (467)
                      |  +||++   .++++++.            +....                    ..+..+.+.+.. .++..+++   
T Consensus       241 G--~G~l~---~~~~~~~~------------~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~---  300 (424)
T PLN02855        241 G--IGFLW---GKSDLLES------------MPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAID---  300 (424)
T ss_pred             c--cEEEE---Echhhhhc------------CCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHH---
Confidence            6  79996   45556554            21110                    001112233222 22222331   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccC-------CcceEEec--CCCHHHHHHHH-HcccEEEeC
Q 012238          369 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-------QIGMFSFT--GLNKAQSDNMT-NKWHVYMTK  438 (467)
Q Consensus       369 ~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~-------~~g~f~~~--~l~~~~~~~ll-~~~gI~v~~  438 (467)
                      +..  +..+++++++.++.++.+++.|+ ++.  + ++.+.+       .+++..+.  +.+.+.+.+.| +++||.+..
T Consensus       301 ~~~--~~g~~~i~~~~~~l~~~l~~~L~-~~~--g-~~i~~~~~~~~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~v~~  374 (424)
T PLN02855        301 YLS--EIGMDRIHEYEVELGTYLYEKLS-SVP--G-VRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRS  374 (424)
T ss_pred             HHH--HhCHHHHHHHHHHHHHHHHHHHh-cCC--C-EEEeCCCcccccCcccEEEEEECCcCHHHHHHHhcccCCEEEec
Confidence            111  12356778888888999999987 652  1 344422       23444332  45555554444 445999885


Q ss_pred             C--------------C--eEEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238          439 D--------------G--RISLAGL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       439 g--------------g--Ris~~~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                      |              +  |||+... +++|+++++++|+++++++
T Consensus       375 g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~  419 (424)
T PLN02855        375 GHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFF  419 (424)
T ss_pred             hhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHH
Confidence            3              2  9998654 6699999999999998764

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.93  E-value=1e-23  Score=211.75  Aligned_cols=329  Identities=12%  Similarity=0.074  Sum_probs=213.8

Q ss_pred             cCCCCCCCCchHHHHHHHHHHHhcC-----CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHH
Q 012238           93 YRTEELQPYVLDVVKKAENLMLERG-----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLA  167 (467)
Q Consensus        93 ~~d~~~~p~~~~~v~~a~~~~~~~~-----~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~  167 (467)
                      |+|..+.+++++.|++++.+.....     ..+.| +..+.+.+++++++++.... . .++++|++  |+|++++++++
T Consensus         2 yld~aa~~~~~~~v~~~~~~~~~~~~~n~~~~~~~-~~~~~~~l~~a~~~~~~~~~-~-~~~~~i~~--t~g~teal~~~   76 (382)
T TIGR03403         2 YLDNNATTMLDPKVKELMDPFFCDIYGNPNSLHQF-GTATHPAIAEALDKLYKGIN-A-RDLDDIII--TSCATESNNWV   76 (382)
T ss_pred             cccCcCCCCCCHHHHHHHHHHHHhcCcCCccccHH-HHHHHHHHHHHHHHHHHHcC-c-CCCCeEEE--eCCHHHHHHHH
Confidence            4566666666889999998877431     11223 34567888998888864322 1 14689999  99999999987


Q ss_pred             HHHHHH---hCC-CCEEEEcCCCCcchH---HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          168 AALIER---YFP-GAKVLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       168 ~~~l~~---~~~-gd~Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      ...+..   ..+ +++|+++.+.|+.+.   ..++..|++++.+|++  .++.+|++.+++.++   ++++++++++|+|
T Consensus        77 ~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~--~~g~~d~~~l~~~i~---~~t~lv~~~~~~n  151 (382)
T TIGR03403        77 LKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPIN--EQGTITAEQVREAIT---EKTALVSVMWANN  151 (382)
T ss_pred             HHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecC--CCCCCCHHHHHHhcc---cCCeEEEEEcccC
Confidence            332211   145 468999986665544   4456789999999984  346789999999887   5678999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      |||.+++.+   +|.++|+++|+++++|+++. +..-..  +      +.+.+. .+++.|++|.+|++|+  |++++  
T Consensus       152 ~tG~~~~~~---~I~~la~~~g~~~ivD~a~~-~g~~~~--~------~~~~~~-D~~~~s~~K~~gp~G~--g~l~v--  214 (382)
T TIGR03403       152 ETGMIFPIK---EIGEICKERGVLFHTDAVQA-IGKIPV--D------VQKAGV-DFLSFSAHKFHGPKGV--GGLYI--  214 (382)
T ss_pred             CCccccCHH---HHHHHHHHcCCEEEEechhh-cCCCcc--C------ccccCC-CEEEEcchhhCCCCce--EEEEE--
Confidence            999999966   67777999999999999954 221111  1      111222 3788999999998884  77752  


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      .+......    .   +.. ...........++..++.++..++..   .   .+.++...+++++.++++.+.|+ +++
T Consensus       215 r~~~~~~p----~---~~g-~~~~~~~~~gt~~~~~~~al~~al~~---~---~~~~~~~~~~~~~l~~~l~~~L~-~~~  279 (382)
T TIGR03403       215 RKGVELTP----L---FHG-GEHMGGRRSGTLNVPYIVAMGEAMRL---A---NEYLDFEKSHVRRLRDRLEDALL-ELP  279 (382)
T ss_pred             CCCCCCCC----c---ccC-CCCCCCcccCCcChHHHHHHHHHHHH---H---HHhHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            22110000    0   000 00000011223444455455544421   1   23366778889999999999998 653


Q ss_pred             CCCCcccccCC----cce--EEecCCCHHHHHHHHHcccEEEeCC-------------------------C--eEEeccC
Q 012238          401 SGKDWSFILRQ----IGM--FSFTGLNKAQSDNMTNKWHVYMTKD-------------------------G--RISLAGL  447 (467)
Q Consensus       401 ~~~~~~~~~~~----~g~--f~~~~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ris~~~~  447 (467)
                         ++.+..+.    .++  |.+.+.+.+.+...|.++||.++.|                         |  |+|+...
T Consensus       280 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~  356 (382)
T TIGR03403       280 ---DVFVVGDREHRVPNTILISIKGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRF  356 (382)
T ss_pred             ---CEEEECCCCCCcCCEEEEEeCCCCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCC
Confidence               14555432    222  2333456665554466779999842                         3  9998765


Q ss_pred             -ChhhHHHHHHHHHHHHHhc
Q 012238          448 -SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       448 -~~~~i~~~~~~l~~~l~~~  466 (467)
                       +++++++++++|+++++++
T Consensus       357 ~t~~did~~~~~l~~~~~~~  376 (382)
T TIGR03403       357 TTEEEIDYTIEVFKKAVQRL  376 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHHH
Confidence             6699999999999988764

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PLN02242 methionine gamma-lyase

Probab=99.93  E-value=1.5e-23  Score=211.01  Aligned_cols=217  Identities=15%  Similarity=0.142  Sum_probs=160.1

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-----hhCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-----NDAR  198 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~-----~~~G  198 (467)
                      +..-..+|++.+|++....        .+++  ++||++|+.++  +...+.+||+|+++.|.|+.+...+     +..|
T Consensus        74 ~~Pt~~~LE~~lA~l~g~~--------~~l~--~~sG~~Ai~~a--l~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G  141 (418)
T PLN02242         74 FNPTVLNLGRQMAALEGTE--------AAYC--TASGMSAISSV--LLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCN  141 (418)
T ss_pred             CChhHHHHHHHHHHHhCCC--------eEEE--EccHHHHHHHH--HHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccC
Confidence            4566889999999996443        4556  89999999997  5556789999999999998887655     3467


Q ss_pred             CCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCC
Q 012238          199 VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS  278 (467)
Q Consensus       199 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~  278 (467)
                      ++++.++.       .|++.+++.+++  .++++|++++|+||||.+.+   +++|+++|+++|++||+|++|..+.++ 
T Consensus       142 ~~~~~~d~-------~d~e~l~~~i~~--~~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~~-  208 (418)
T PLN02242        142 ITTTFVDI-------TDLEAVKKAVVP--GKTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVLS-  208 (418)
T ss_pred             ceEEEcCC-------CCHHHHHHhcCc--CCCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCCC-
Confidence            77766654       388999998862  25889999999999999875   567888899999999999999766542 


Q ss_pred             CCCChhHHHHHHhcCCeEEEEecCccCcccCCCcc-ceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC--ccCCCchH
Q 012238          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP--MYSNPPVH  355 (467)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~  355 (467)
                          .  .    .. ...++++||||.++.+|+++ ||++   +++++++.            +......  ...+++..
T Consensus       209 ----~--~----~~-g~divv~S~SK~l~g~g~~~gG~iv---~~~~li~~------------l~~~~~~~~~~~g~~~~  262 (418)
T PLN02242        209 ----P--A----RL-GADVVVHSISKFISGGADIIAGAVC---GPAELVNS------------MMDLHHGALMLLGPTMN  262 (418)
T ss_pred             ----H--H----Hc-CCcEEEEeCccccCCCCCceEEEEE---cCHHHHHH------------HHHHhhhhhhccCCCCC
Confidence                1  1    11 24688999999999999985 7774   78888777            4433221  22334444


Q ss_pred             HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       356 ~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      .|.++..++...        .+..+.+++.++++.+.+.|+ +.+
T Consensus       263 ~~~A~l~~~~l~--------tl~~r~~~~~~~a~~la~~L~-~~~  298 (418)
T PLN02242        263 PKVAFELSERLP--------HLSLRMKEHCRRAMEYAKRMK-ELG  298 (418)
T ss_pred             HHHHHHHHcCCC--------cHHHHHHHHHHHHHHHHHHHH-hCC
Confidence            555555554432        134466788899999999998 765

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.93  E-value=6.3e-23  Score=204.44  Aligned_cols=307  Identities=13%  Similarity=0.019  Sum_probs=198.3

Q ss_pred             chHHHHHHHHHHHhcCCC-------CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh
Q 012238          102 VLDVVKKAENLMLERGEN-------KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY  174 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~-------~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~  174 (467)
                      ..+.+.+++.+.......       ..+....-..+++++++++++.        +++++  ++|+++++.++  +...+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--------~~i~~--~~g~t~al~~~--l~~~~   80 (361)
T cd06452          13 LTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--------DEARV--TPGAREGKFAV--MHSLC   80 (361)
T ss_pred             CCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCC--------ceEEE--eCCHHHHHHHH--HHHhc
Confidence            367888888877632100       1111123467899999999532        47888  99999999987  44456


Q ss_pred             CCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC----CCcEEEEeCCCCCCCCCCCCHHH
Q 012238          175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP----GGSFILLHGCAHNPTGIDPTPEQ  250 (467)
Q Consensus       175 ~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~----~~~~~i~i~~p~NPTG~~~~~~~  250 (467)
                      .+||+|+++.++|......++..|++++.++.+.+.++.+|++.+++.+++..    .+++++++++|+||||...+   
T Consensus        81 ~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~---  157 (361)
T cd06452          81 EKGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD---  157 (361)
T ss_pred             CCCCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc---
Confidence            79999999999887766778899999999998544456899999999886421    36789999999999998655   


Q ss_pred             HHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhh
Q 012238          251 WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCC  330 (467)
Q Consensus       251 l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~  330 (467)
                      +++|+++|+++|+++|+|++|.....   +.+.       ......++++|+||.++ ++.|+||++   .+++++++  
T Consensus       158 ~~~i~~~~~~~~~~vivD~a~~~g~~---~~~~-------~~~~~d~~~~s~~K~l~-~~~~~G~l~---~~~~~~~~--  221 (361)
T cd06452         158 AKKIAKVCHEYGVPLLLNGAYTVGRM---PVSG-------KELGADFIVGSGHKSMA-ASAPIGVLA---TTEEWADI--  221 (361)
T ss_pred             HHHHHHHHHHcCCeEEEECCcccCCc---CCCH-------HHcCCCEEEecCCcccc-CCCCeEEEE---ECHHHHHH--
Confidence            56788889999999999999863221   1111       11134689999999998 556999995   66777776  


Q ss_pred             hhhHHHHHHHHHhhccCcc--------CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CC
Q 012238          331 EVAVIQVKSQLKRLARPMY--------SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KS  401 (467)
Q Consensus       331 ~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~-g~  401 (467)
                                +.+...++.        .......+..+...+.   .   +.+.++... +..++++++.+.|+ ++ | 
T Consensus       222 ----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~---~---~~~~~~~~~-~~~~~~~~l~~~L~-~l~g-  282 (361)
T cd06452         222 ----------VFRTSQMFKIKEVELLGCTLRGAPLVTLMASFP---H---VKERVKRWD-EEVEKARWFVAELE-KIEG-  282 (361)
T ss_pred             ----------HhccccccccceeeeeccccCchHHHHHHHHHH---H---HHHHHHHHH-HHHHHHHHHHHHHh-cCCC-
Confidence                      443332210        1111111112222221   0   111122222 22344578888888 76 5 


Q ss_pred             CCCcccc---cCCcceEEecCCC-------------HHHHHHHHHcccEEEeCCC-----eEEeccCChhhHHHHHHHHH
Q 012238          402 GKDWSFI---LRQIGMFSFTGLN-------------KAQSDNMTNKWHVYMTKDG-----RISLAGLSLAKCEYLADAII  460 (467)
Q Consensus       402 ~~~~~~~---~~~~g~f~~~~l~-------------~~~~~~ll~~~gI~v~~gg-----Ris~~~~~~~~i~~~~~~l~  460 (467)
                         +++.   ....+ |+.+...             .++.++|++ +||.+...|     |++....++++++.++++|+
T Consensus       283 ---~~v~~~~~~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gI~~~~~~~~~~~ri~~~g~~~e~~~~l~~al~  357 (361)
T cd06452         283 ---IKQLGEKPKNHD-LMFFETPSFDEIAKKHKRRGYFLYSELKK-RGIHGIKPGLTRYFKLSTYGLTWEQVEYVVDAFK  357 (361)
T ss_pred             ---eEEECCCCCCCc-eEEEEcCCcchhhhhccccchhHHHHHHH-cCceEEcCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence               4443   22233 2222111             135566655 599975443     88874448899999999998


Q ss_pred             HHH
Q 012238          461 DSY  463 (467)
Q Consensus       461 ~~l  463 (467)
                      ++.
T Consensus       358 ~~~  360 (361)
T cd06452         358 EIA  360 (361)
T ss_pred             HHh
Confidence            764

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.93  E-value=7e-23  Score=204.73  Aligned_cols=323  Identities=15%  Similarity=0.080  Sum_probs=204.5

Q ss_pred             chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEE
Q 012238          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL  181 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vl  181 (467)
                      +++.+++++.... ......|.  .-..++|+.++++++...    .++.|++  +.+|++++..+  +.....+||+|+
T Consensus        16 ~~~~~~~a~~~~~-~~~~~~~~--~~~~~~~~~l~~l~~~~~----~~~~i~~--~~~gt~~l~~~--~~~l~~~~~~vl   84 (368)
T PRK13479         16 TSRTVREAMLRDW-GSWDDDFN--ALTASVRAKLVAIATGEE----GYTCVPL--QGSGTFSVEAA--IGSLVPRDGKVL   84 (368)
T ss_pred             CCHHHHHHhCCCC-CCCChHHH--HHHHHHHHHHHHHhCCCC----CceEEEE--cCCcHHHHHHH--HHhccCCCCeEE
Confidence            4778887775543 21112232  357889999999976431    0245667  89999999998  455567999999


Q ss_pred             EcCCCCcch--HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 012238          182 ISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ  259 (467)
Q Consensus       182 v~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~  259 (467)
                      ++.++|...  ...++..|++++.++..  .++.+|++.+++.+++. ++.+++++++++||||...+.+   +|+++|+
T Consensus        85 v~~~~~~~~~~~~~~~~~g~~~~~i~~~--~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~~~~---~i~~l~~  158 (368)
T PRK13479         85 VPDNGAYGARIAQIAEYLGIAHVVLDTG--EDEPPDAAEVEAALAAD-PRITHVALVHCETTTGILNPLD---EIAAVAK  158 (368)
T ss_pred             EEeCCchHHHHHHHHHHcCCcEEEEECC--CCCCCCHHHHHHHHHhC-CCCcEEEEEcccCccccccCHH---HHHHHHH
Confidence            998888665  47788899999999983  34679999999998743 3556788899999999999865   6677799


Q ss_pred             hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC-cccCCCccceEEEecCCHHHHhhhhhhh---HH
Q 012238          260 EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIGAMNVVCSSSDLAARCCEVA---VI  335 (467)
Q Consensus       260 ~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG~~~~v~~~~~~~~~~~~~~---~~  335 (467)
                      ++|+++|+| +|+.+....       + .+.+.+.+ +++.|++|. +|++|  +||++   .+++.++......   +.
T Consensus       159 ~~~~~livD-a~~~~g~~~-------~-~~~~~~~d-~~v~s~~K~l~g~~G--~G~l~---~~~~~~~~~~~~~~~~~~  223 (368)
T PRK13479        159 RHGKRLIVD-AMSSFGAIP-------I-DIAELGID-ALISSANKCIEGVPG--FGFVI---ARRSELEACKGNSRSLSL  223 (368)
T ss_pred             HcCCEEEEE-cccccCCcc-------c-cccccCce-EEEecCccccccCCC--ceEEE---ECHHHHHHhhcCCCCeee
Confidence            999999999 545554321       1 11122223 566788885 47788  59996   6666666500000   00


Q ss_pred             HHHHHHHhhc--cCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC--
Q 012238          336 QVKSQLKRLA--RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ--  411 (467)
Q Consensus       336 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~--  411 (467)
                      .+........  ......++.....++..++..  +.+  ...+++..++++++++.+.+.|+ ++|+    +...+.  
T Consensus       224 ~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~--l~~--~~~~~~~~~~~~~~~~~l~~~L~-~~g~----~~~~~~~~  294 (368)
T PRK13479        224 DLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLE--LEE--EGGVPARGARYANNQRTLVAGMR-ALGF----EPLLDAEI  294 (368)
T ss_pred             cHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHH--HHH--hhCHHHHHHHHHHHHHHHHHHHH-HcCC----cccCCchh
Confidence            0000000000  011113343333333333321  100  11245677889999999999998 8774    333221  


Q ss_pred             ---cceEEecC----CCHHH-HHHHHHcccEEEeCCC-------eEEe-ccCChhhHHHHHHHHHHHHHhc
Q 012238          412 ---IGMFSFTG----LNKAQ-SDNMTNKWHVYMTKDG-------RISL-AGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       412 ---~g~f~~~~----l~~~~-~~~ll~~~gI~v~~gg-------Ris~-~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                         +...++..    .+.+. .+++. ++||.+.+|.       ||+. +..+++++++++++|+++++++
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~  364 (368)
T PRK13479        295 QSPIIVTFHAPADPAYDFKEFYERLK-EQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYWM  364 (368)
T ss_pred             cCceEEEEECCCCCCcCHHHHHHHHH-HCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence               11223322    23344 45554 4699998862       9984 6557899999999999998865

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.93  E-value=5.3e-23  Score=209.23  Aligned_cols=338  Identities=15%  Similarity=0.087  Sum_probs=221.2

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.+|+..|..-..-|.  .+|.|.+++.+.++... ..+.+..+..+|++++++++..       .+++++  ++||+
T Consensus        47 G~~ylD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~~-~~~~~~~~~~~lae~l~~~~~~-------~~~v~~--~~sGs  114 (423)
T TIGR00713        47 GNEYIDYVLSWGPLILGH--AHPRVVEAVKEALERGT-SYGAPTEAEILLAKEIISRVPS-------VEMVRF--VNSGT  114 (423)
T ss_pred             CCEEEEccccccccccCC--CCHHHHHHHHHHHHhCC-cCCCCCHHHHHHHHHHHHhCCc-------ccEEEE--eCCHH
Confidence            458999998875222233  37889999988886643 2233677899999999998533       257888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh---CCCCeEEeeeecC--C-----CC---CCChhhHHHHHHcCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND---ARVPWSEYRYYDP--K-----TV---GLDFEGMIADIKAAPG  228 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~---~G~~~~~v~~~~~--~-----~~---~~d~~~l~~~l~~~~~  228 (467)
                      +|++.+.++.......++|+...|+|..+...+..   .|......+..+.  .     ..   ..|++.+++.+++.+.
T Consensus       115 eA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~  194 (423)
T TIGR00713       115 EATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGE  194 (423)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCC
Confidence            99999866544455668999999999987543322   1111111111000  0     00   1278999998875434


Q ss_pred             CcEEEEe-CCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc
Q 012238          229 GSFILLH-GCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (467)
Q Consensus       229 ~~~~i~i-~~p~NPTG~~~~-~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (467)
                      ++.++++ +.++| +|.+++ .+.+++|.++|++||+++|+||+|.++.++.   . ... ......++   +.+|||.+
T Consensus       195 ~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~---~-~~~-~~~~~~pD---i~t~sK~l  265 (423)
T TIGR00713       195 EIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVAL---G-GAQ-EYFGVEPD---LTTLGKII  265 (423)
T ss_pred             cEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCc---c-hhH-HHhCCCcc---hhhhhhhh
Confidence            5455555 68888 798887 6889999999999999999999999886542   1 111 11222233   23799999


Q ss_pred             ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHh---hccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012238          307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKR---LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR  383 (467)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~  383 (467)
                      + +|+|+||++   +++++++.            +..   .....+.+.+.+++.++..+|+..  .+  ...++..++.
T Consensus       266 ~-~G~pig~v~---~~~~i~~~------------~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~--~~--~~~~~~~~~~  325 (423)
T TIGR00713       266 G-GGLPVGAFG---GRREIMER------------LAPEGPVYQAGTLSGNPLAMAAGLATLKLL--DE--EGVYTELDEL  325 (423)
T ss_pred             c-CCCceeeee---EHHHHHHh------------hCcCCCeeeccCCCCCHHHHHHHHHHHHHH--hc--ccHHHHHHHH
Confidence            9 999999995   77777776            432   112234456777777776666421  00  0124455666


Q ss_pred             HHHHHHHHHHHhhhccCCCCCcccccCCcceE-EecCC------------CH----HHHHHHHHcccEEEeCCC----eE
Q 012238          384 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF-SFTGL------------NK----AQSDNMTNKWHVYMTKDG----RI  442 (467)
Q Consensus       384 ~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f-~~~~l------------~~----~~~~~ll~~~gI~v~~gg----Ri  442 (467)
                      .+..++.+.+.++ +.+++.  . ....|+++ +++..            +.    .+...+++ +||++.+++    ||
T Consensus       326 ~~~~~~~l~~~~~-~~~~~~--~-v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~l  400 (423)
T TIGR00713       326 AKRLAEGLSEVLE-DTGIPH--T-VNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLD-KGVFLPPSQFEACFL  400 (423)
T ss_pred             HHHHHHHHHHHHH-hcCCCe--E-EEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHH-CCeEEecCCccceee
Confidence            6666777777777 666421  1 23445555 33421            11    23446665 699987754    88


Q ss_pred             EeccCChhhHHHHHHHHHHHHHhc
Q 012238          443 SLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       443 s~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ++.. +++++++++++|.++++++
T Consensus       401 ~~~~-t~~~i~~~~~~l~~~l~~~  423 (423)
T TIGR00713       401 SAAH-TEEDIENTIEAAEEVFAEL  423 (423)
T ss_pred             ECCC-CHHHHHHHHHHHHHHHhhC
Confidence            8774 8999999999999998764

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.92  E-value=9.1e-23  Score=203.00  Aligned_cols=313  Identities=14%  Similarity=0.113  Sum_probs=203.1

Q ss_pred             CCchHHHHHHHHHHHhcCCCCcCCCCcc--hHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCC
Q 012238          100 PYVLDVVKKAENLMLERGENKEYLPIEG--LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (467)
Q Consensus       100 p~~~~~v~~a~~~~~~~~~~~~Y~~~~G--~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~g  177 (467)
                      +.+++.+.+++.+...   ...| +...  ..++++.+++++....     ++.+++  +.||++++.++  +...+.+|
T Consensus         8 ~~~~~~v~~a~~~~~~---~~~~-~~~~~~~~~~~~~la~~~g~~~-----~~~~~~--~~~~t~al~~~--~~~~~~~g   74 (356)
T cd06451           8 SNVPPRVLKAMNRPML---GHRS-PEFLALMDEILEGLRYVFQTEN-----GLTFLL--SGSGTGAMEAA--LSNLLEPG   74 (356)
T ss_pred             cCCCHHHHHHhCCCcc---CCCC-HHHHHHHHHHHHHHHHHhcCCC-----CCEEEE--ecCcHHHHHHH--HHHhCCCC
Confidence            3447888888865432   1223 2222  5688888888875421     344666  88899999987  44456799


Q ss_pred             CEEEEcCCCCcc--hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012238          178 AKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (467)
Q Consensus       178 d~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~  255 (467)
                      |+|+++.++|..  +...++..|++++.++.++  ++.+|++.+++.+++  .+++++++++++||||.+++.+   +|.
T Consensus        75 ~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~i~~--~~~~~v~i~~~~~~~G~~~~~~---~i~  147 (356)
T cd06451          75 DKVLVGVNGVFGDRWADMAERYGADVDVVEKPW--GEAVSPEEIAEALEQ--HDIKAVTLTHNETSTGVLNPLE---GIG  147 (356)
T ss_pred             CEEEEecCCchhHHHHHHHHHhCCCeEEeecCC--CCCCCHHHHHHHHhc--cCCCEEEEeccCCCcccccCHH---HHH
Confidence            999999987764  5677888999999999842  467999999999973  3677888899999999998865   567


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHH
Q 012238          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVI  335 (467)
Q Consensus       256 ~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~  335 (467)
                      ++|+++|+++++|++|. +..  ...+   +   ...+. .+++.|.+|.++.| .++||++   .++++++.       
T Consensus       148 ~~a~~~~~~li~D~~~~-~g~--~~~~---~---~~~~~-d~~~~s~~K~l~~p-~g~G~l~---~~~~~~~~-------  206 (356)
T cd06451         148 ALAKKHDALLIVDAVSS-LGG--EPFR---M---DEWGV-DVAYTGSQKALGAP-PGLGPIA---FSERALER-------  206 (356)
T ss_pred             HHHHhcCCEEEEeeehh-ccC--cccc---c---cccCc-cEEEecCchhccCC-CCcceeE---ECHHHHHH-------
Confidence            77999999999999854 221  1111   1   11222 35577899999854 3589996   56677665       


Q ss_pred             HHHH-------------HHHhhc-cCccCC-CchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          336 QVKS-------------QLKRLA-RPMYSN-PPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       336 ~~~~-------------~l~~~~-~~~~~~-~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                       +..             ...... .....+ ++...+.++..++..  +.   ...+++..++.+++++++.+.|+ ..|
T Consensus       207 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~--l~---~~~~~~~~~~~~~~~~~l~~~L~-~~g  279 (356)
T cd06451         207 -IKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDL--IL---EEGLENRWARHRRLAKALREGLE-ALG  279 (356)
T ss_pred             -HHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHH--HH---HhhHHHHHHHHHHHHHHHHHHHH-HcC
Confidence             211             000000 001222 233223333333321  11   12356677888888999999998 776


Q ss_pred             CCCCcccccC---CcceEEecC----CCH-HHHHHHHHcccEEEeCC------C--eEEeccC-ChhhHHHHHHHHHHHH
Q 012238          401 SGKDWSFILR---QIGMFSFTG----LNK-AQSDNMTNKWHVYMTKD------G--RISLAGL-SLAKCEYLADAIIDSY  463 (467)
Q Consensus       401 ~~~~~~~~~~---~~g~f~~~~----l~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~-~~~~i~~~~~~l~~~l  463 (467)
                      +    ....+   .++.++|+.    .+. ++++.+.+++||.+.+|      +  |+|++.. +++++++++++|++++
T Consensus       280 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~  355 (356)
T cd06451         280 L----KLLAKPELRSPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEAL  355 (356)
T ss_pred             C----eeccCcccCCCceEEEECCCCCCHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            3    44322   133344442    233 44556555459999875      2  9998643 6799999999999876


Q ss_pred             H
Q 012238          464 H  464 (467)
Q Consensus       464 ~  464 (467)
                      +
T Consensus       356 ~  356 (356)
T cd06451         356 K  356 (356)
T ss_pred             C
Confidence            4

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.92  E-value=6.7e-23  Score=207.04  Aligned_cols=322  Identities=16%  Similarity=0.146  Sum_probs=204.2

Q ss_pred             cEEecCcccCCCCCCCCchHHHHHHHHHHHhcC---CCCcCCCCcc----hHHHHHHHHHHHhCCCCcccccCceeeeec
Q 012238           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERG---ENKEYLPIEG----LAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (467)
Q Consensus        85 ~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~---~~~~Y~~~~G----~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (467)
                      .+.|..+      +..++++.+++++.+.+...   ....|....+    ..++|+.++++++..      +++|++  +
T Consensus        18 ~~yl~~~------~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~------~~~v~~--~   83 (397)
T TIGR01976        18 RVFFDNP------AGTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNAD------PPEVVF--G   83 (397)
T ss_pred             eEEecCC------ccCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCC------CCeEEE--e
Confidence            4556544      33445888999988876431   1123533333    468999999986543      446888  8


Q ss_pred             CCchhHHHHHHHHHH-HhCCCCEEEEcCCCCcch----HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEE
Q 012238          158 LSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNH----KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (467)
Q Consensus       158 ~ggt~al~l~~~~l~-~~~~gd~Vlv~~P~y~~~----~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~  232 (467)
                      .|+++++.++...+. .+.|||+|+++.|.|...    ...++..|++++.++.+ ++++.+|++.+++.++   +++++
T Consensus        84 ~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~~i~---~~~~l  159 (397)
T TIGR01976        84 ANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVD-EATGELHPDDLASLLS---PRTRL  159 (397)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEecc-ccCCCcCHHHHHHhcC---CCceE
Confidence            999999887633332 256999999999988653    34567789999999884 3346799999999987   57889


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCc
Q 012238          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER  312 (467)
Q Consensus       233 i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R  312 (467)
                      +++++|+||||.+.+   +++|+++|+++|+++++|+++. .....  .+      +.+.+ ..+++.|++|.+|   .|
T Consensus       160 v~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~-~~~~~--~~------~~~~~-~d~~~~s~~K~~g---~~  223 (397)
T TIGR01976       160 VAVTAASNTLGSIVD---LAAITELVHAAGALVVVDAVHY-APHGL--ID------VQATG-ADFLTCSAYKFFG---PH  223 (397)
T ss_pred             EEEeCCCCCCCccCC---HHHHHHHHHHcCCEEEEehhhh-ccccC--CC------HHHcC-CCEEEEechhhcC---Cc
Confidence            999999999999987   4577777999999999999953 21111  11      11222 3455689999875   46


Q ss_pred             cceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc---------c-CCCchHH---HHHHHHHhCChh------hHHHH
Q 012238          313 IGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM---------Y-SNPPVHG---ARIVANVVGNPA------LFDEW  373 (467)
Q Consensus       313 iG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~-~~~~~~~---~~~~~~~L~~~~------~~~~~  373 (467)
                      +|+++   .++++++.            +.......         . ..++...   ...+...+.+..      ..+..
T Consensus       224 ~G~l~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~  288 (397)
T TIGR01976       224 MGILW---GRPELLMN------------LPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERL  288 (397)
T ss_pred             eEEEE---EcHHHHhh------------CCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhh
Confidence            89985   56666665            32211110         0 1122111   222222222111      01111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccC-----CcceEEec--CCCHHHHHHHHHcccEEEeCC-------
Q 012238          374 KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-----QIGMFSFT--GLNKAQSDNMTNKWHVYMTKD-------  439 (467)
Q Consensus       374 ~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~-----~~g~f~~~--~l~~~~~~~ll~~~gI~v~~g-------  439 (467)
                      .+.+++.+++..+.++++.+.|+ +++.   +++..+     .++++.+.  +.+.+.+.+.|+++||.+..|       
T Consensus       289 ~~~~~~~~~~~~~l~~~l~~~L~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~  364 (397)
T TIGR01976       289 VASFQAIDAYENRLAEYLLVGLS-DLPG---VTLYGVARLAARVPTVSFTVHGLPPQRVVRRLADQGIDAWAGHFYAVRL  364 (397)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHh-cCCC---EEEeCCCCccCCCceEEEEeCCcCHHHHHHHHHHCCeEEEeCccchHHH
Confidence            12256777888888999999998 7641   444433     44544322  334444444445579999754       


Q ss_pred             ----------C--eEEeccC-ChhhHHHHHHHH
Q 012238          440 ----------G--RISLAGL-SLAKCEYLADAI  459 (467)
Q Consensus       440 ----------g--Ris~~~~-~~~~i~~~~~~l  459 (467)
                                +  |||+... +++++++++++|
T Consensus       365 ~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       365 LRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             HHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence                      2  9998543 668899988764

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.92  E-value=1.8e-22  Score=200.72  Aligned_cols=312  Identities=17%  Similarity=0.123  Sum_probs=204.2

Q ss_pred             chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEE
Q 012238          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL  181 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vl  181 (467)
                      +++.+++++...... ....|.  .-..++|+.++++++...    +...|++  +.||++++..+  +...+.+||+|+
T Consensus        10 ~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~la~~~~~~~----~~~~i~~--~~~gt~~l~~~--~~~~~~~~~~vi   78 (355)
T TIGR03301        10 TSATVRDAMLVDWCH-WDSEFN--DVTDQVRDRLLALAGGDD----NHTCVLL--QGSGTFAVEAT--IGSLVPRDGKLL   78 (355)
T ss_pred             CCHHHHHHhhhhccC-CCHHHH--HHHHHHHHHHHHHhcCCC----CCcEEEE--eCCcHHHHHHH--HHhccCCCCeEE
Confidence            478888888773221 112342  447789999999976541    1125666  89999999997  444556788877


Q ss_pred             EcCCCC-cc-hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 012238          182 ISSPTW-GN-HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ  259 (467)
Q Consensus       182 v~~P~y-~~-~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~  259 (467)
                      +..+.+ +. +...++..|.+++.++.  +.++.+|++.+++.+++. ++.+++++++++||||...+   +++|+++|+
T Consensus        79 ~~~~~~~~~~~~~~a~~~g~~~~~i~~--~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~  152 (355)
T TIGR03301        79 VLINGAYGERLAKICEYLGIPHTDLNF--SEYEPPDLNRIEEALAAD-PDITHVATVHHETTTGILNP---LEAIAKVAR  152 (355)
T ss_pred             EECCCchhhHHHHHHHHcCCceEEEec--CCCCCCCHHHHHHHHHhC-CCceEEEEEecCCcccchhH---HHHHHHHHH
Confidence            666554 43 56677889999999987  345679999999999753 35567778899999999877   468888899


Q ss_pred             hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc-ccCCCccceEEEecCCHHHHhhhhhhhHHHHH
Q 012238          260 EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARCCEVAVIQVK  338 (467)
Q Consensus       260 ~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~  338 (467)
                      +||+++|+|+++. +..  .+.   .+    ...+..+++.|++|.+ |++|  +||++   .+++.++.        +.
T Consensus       153 ~~~~~livD~~~s-~g~--~~~---~~----~~~~~d~~~~s~~K~l~~~~G--~g~~~---~~~~~~~~--------~~  209 (355)
T TIGR03301       153 SHGAVLIVDAMSS-FGA--IPI---DI----EELDVDALIASANKCLEGVPG--FGFVI---ARRDLLEA--------SA  209 (355)
T ss_pred             HcCCEEEEEeccc-cCC--ccc---ch----hhcCccEEEecCCcccccCCc--eeEEE---ECHHHHHH--------hh
Confidence            9999999998643 321  111   11    1123457799999976 6666  69996   66777766        22


Q ss_pred             H-----------HHHhhc--cCccCCCchHHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 012238          339 S-----------QLKRLA--RPMYSNPPVHGARIVANVVGNPALFDEWKAE-MEMMAGRIKNVRQKLFDSLSAKDKSGKD  404 (467)
Q Consensus       339 ~-----------~l~~~~--~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-l~~~~~~~~~~r~~l~~~l~~~~g~~~~  404 (467)
                      .           .+....  ......++...+.++..++..  +.   ++. +++..++++++++++.+.|+ ++|    
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~--~~---~~g~~~~~~~~~~~~~~~~~~~L~-~~g----  279 (355)
T TIGR03301       210 GNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEE--LE---AEGGVPARIARYRRNRELLVDGLR-ALG----  279 (355)
T ss_pred             CCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHH--HH---HcccHHHHHHHHHHHHHHHHHHHH-HcC----
Confidence            0           000000  111123454454444444421  10   111 56677888999999999998 776    


Q ss_pred             cccccC---CcceEEecCC------CHHHHHHHHHcccEEEeCCC-------eEEe-ccCChhhHHHHHHHHHHHH
Q 012238          405 WSFILR---QIGMFSFTGL------NKAQSDNMTNKWHVYMTKDG-------RISL-AGLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       405 ~~~~~~---~~g~f~~~~l------~~~~~~~ll~~~gI~v~~gg-------Ris~-~~~~~~~i~~~~~~l~~~l  463 (467)
                      ++...+   .+++++|+.+      +.+.+.+.+.++||.+.+++       ||++ ...+++++++++++|++++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~  355 (355)
T TIGR03301       280 FQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDAL  355 (355)
T ss_pred             CeeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence            343322   2444555433      22344444555699998873       9986 4457899999999998764

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK07179 hypothetical protein; Provisional

Probab=99.92  E-value=5e-22  Score=201.13  Aligned_cols=323  Identities=15%  Similarity=0.103  Sum_probs=211.0

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc---CC--CCcCC-CCcchHHHHHHHHHHHhCCCCcccccCceee
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER---GE--NKEYL-PIEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~---~~--~~~Y~-~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      .+...+||+.-.|.+-..    .|.+++++.+.+..   +.  ...|. ......+|++.+|+++..        +.+++
T Consensus        52 ~g~~~~~~~~~~YL~l~~----~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~--------~~~~~  119 (407)
T PRK07179         52 PGPDAIILQSNDYLNLSG----HPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGF--------ESCLL  119 (407)
T ss_pred             CCCcEEEeecCCccCCCC----CHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCC--------CcEEE
Confidence            445789999888865443    45677777666532   11  11221 223567889999999643        35566


Q ss_pred             eecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEE
Q 012238          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILL  234 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~  234 (467)
                        ++||++|+.++  +.....+||.|++..+.+......++..|++++.++.       .|++.+++.+++  .++.+++
T Consensus       120 --~~sG~~An~~~--l~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~--~~~~lV~  186 (407)
T PRK07179        120 --CQSGWAANVGL--LQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH-------NDVDHLRRQIER--HGPGIIV  186 (407)
T ss_pred             --ECCHHHHHHHH--HHHhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecC-------CCHHHHHHHHHh--cCCeEEE
Confidence              89999999887  4444668999999999988887777888887665532       589999999974  2467888


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe-EEEEecCccCcccCCCcc
Q 012238          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME-LLVAQSYSKNLGLYAERI  313 (467)
Q Consensus       235 i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~~~~G~Ri  313 (467)
                      +++++||||.+.+.   ++|.++|+++|+++|+||+|.....+. . ....+..+ ....+ .+++.|+||.++   .|+
T Consensus       187 v~~v~n~tG~i~pl---~~I~~l~~~~~~~livDea~~~g~~g~-~-g~g~~~~~-~~~~~vdi~~~S~sK~~g---~~~  257 (407)
T PRK07179        187 VDSVYSTTGTIAPL---ADIVDIAEEFGCVLVVDESHSLGTHGP-Q-GAGLVAEL-GLTSRVHFITASLAKAFA---GRA  257 (407)
T ss_pred             ECCCCCCCCccccH---HHHHHHHHHcCCEEEEECcccccCcCC-C-CCchHHhc-CCCCCCCEEEeechHhhh---ccC
Confidence            89999999999995   467777999999999999987433331 1 11111111 11122 588999999987   368


Q ss_pred             ceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC-ccCCC-chHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012238          314 GAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP-MYSNP-PVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL  391 (467)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~-~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l  391 (467)
                      ||++   +++++++.            +.....+ .+.+. +.....++..+++.       .+.....+++++++++++
T Consensus       258 G~l~---~~~~~~~~------------~~~~~~~~~~~~t~~~~~~aa~~aal~~-------~~~~~~~~~~l~~~~~~l  315 (407)
T PRK07179        258 GIIT---CPRELAEY------------VPFVSYPAIFSSTLLPHEIAGLEATLEV-------IESADDRRARLHANARFL  315 (407)
T ss_pred             eEEE---eCHHHHHH------------HHHhCcCeeeCCCCCHHHHHHHHHHHHH-------HhcCHHHHHHHHHHHHHH
Confidence            9985   67777665            4333222 12222 22221222222221       112345678899999999


Q ss_pred             HHHhhhccCCCCCcccccCCcceEEecCC----CHHHHHHHHHcccEEE----eCC-----C--eEEecc-CChhhHHHH
Q 012238          392 FDSLSAKDKSGKDWSFILRQIGMFSFTGL----NKAQSDNMTNKWHVYM----TKD-----G--RISLAG-LSLAKCEYL  455 (467)
Q Consensus       392 ~~~l~~~~g~~~~~~~~~~~~g~f~~~~l----~~~~~~~ll~~~gI~v----~~g-----g--Ris~~~-~~~~~i~~~  455 (467)
                      .+.|+ ++|    +++. +.+. ++++.+    +.+.+.+.+.++||.+    .|+     +  ||+++. .++++++++
T Consensus       316 ~~~L~-~~g----~~v~-~~~~-i~~l~~~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~  388 (407)
T PRK07179        316 REGLS-ELG----YNIR-SESQ-IIALETGSERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRV  388 (407)
T ss_pred             HHHHH-HcC----CCCC-CCCC-EEEEEeCCHHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHH
Confidence            99999 776    3444 3444 444322    2244555555679973    332     2  999874 478999999


Q ss_pred             HHHHHHHHHhc
Q 012238          456 ADAIIDSYHNV  466 (467)
Q Consensus       456 ~~~l~~~l~~~  466 (467)
                      +++|++++++.
T Consensus       389 ~~~l~~~~~~~  399 (407)
T PRK07179        389 LEVCREARDEV  399 (407)
T ss_pred             HHHHHHHHHhh
Confidence            99999998753

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.92  E-value=6.9e-23  Score=207.01  Aligned_cols=326  Identities=13%  Similarity=0.048  Sum_probs=205.9

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC-----CcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~-----~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      .+++|++|.+    ++++ |+.+.++..+.  .. ...|.+     ..|.+++++++++++....|.+  .+++++  +.
T Consensus        21 ~~~~l~~g~~----~~~~-p~~~~~~~~~~--~~-~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~--~~~v~~--~~   88 (398)
T cd00613          21 SMSFLGSGTY----KHNP-PAVIKRNILEN--EF-YTAYTPYQPEISQGRLQALFELQTMLCELTGMD--VANASL--QD   88 (398)
T ss_pred             Cccccccccc----CCcC-cHHHHHHhccc--cC-cccCCCCChhhhhhHHHHHHHHHHHHHHHHCCC--ccceec--cC
Confidence            5699999998    6664 66666655554  22 245665     7899999999999987765543  346666  55


Q ss_pred             Cch-hHHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHHhhCC----CCeEEeeeecCCCCCCChhhHHHHHHcCCCCcE
Q 012238          159 SGT-GSLRLAAALIERYFP--GAKVLISSPTWGNHKNIFNDAR----VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (467)
Q Consensus       159 ggt-~al~l~~~~l~~~~~--gd~Vlv~~P~y~~~~~~~~~~G----~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (467)
                      +|+ ++...+  +...+.+  ||+|++++|.|+.+...++..|    ++++.+++.  .++.+|++.+++.+.   ++++
T Consensus        89 ~g~~~~~~~~--~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---~~t~  161 (398)
T cd00613          89 EATAAAEAAG--LAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSD--EGGTVDLEALKEEVS---EEVA  161 (398)
T ss_pred             chHHHHHHHH--HHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccC--CCCCcCHHHHHHhcC---CCeE
Confidence            444 443333  2223445  9999999999999988888777    888888873  345789999999886   5688


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC--
Q 012238          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY--  309 (467)
Q Consensus       232 ~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~--  309 (467)
                      ++++++|+ |||.+.  +.+++|+++|+++|+++|+|+++.... ...  ..       ......+++.|++|.+ +|  
T Consensus       162 ~viv~~~~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~-~~~--~~-------~~~~~d~~~~s~~K~~-~p~g  227 (398)
T cd00613         162 ALMVQYPN-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLT-GLK--PP-------GEYGADIVVGNLQKTG-VPHG  227 (398)
T ss_pred             EEEEECCC-CCceec--chHHHHHHHHHhcCCEEEEEecccccc-CCC--Ch-------HHcCCCEEEeeccccC-CCCC
Confidence            88888885 999984  446899999999999999999854322 111  11       1113568899999998 56  


Q ss_pred             --CCccceEEEecCCHHHHhhhhhhh-HHHH-------------H---HH--HHhhccCccCCCchHHHHHHHHHhCChh
Q 012238          310 --AERIGAMNVVCSSSDLAARCCEVA-VIQV-------------K---SQ--LKRLARPMYSNPPVHGARIVANVVGNPA  368 (467)
Q Consensus       310 --G~RiG~~~~v~~~~~~~~~~~~~~-~~~~-------------~---~~--l~~~~~~~~~~~~~~~~~~~~~~L~~~~  368 (467)
                        |+|+||++   .++++++.- .+. .+..             .   ..  ........+.+.+...+.++..++... 
T Consensus       228 ~Ggp~~g~l~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~-  302 (398)
T cd00613         228 GGGPGAGFFA---VKKELVRFL-PGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLG-  302 (398)
T ss_pred             CCCCceeEEE---EhhhhHhhC-CCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhC-
Confidence              79999996   555555540 000 0000             0   00  000001111122222333332222111 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceE--EecCCC-------HHHHHHHHHcccEEEeC-
Q 012238          369 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF--SFTGLN-------KAQSDNMTNKWHVYMTK-  438 (467)
Q Consensus       369 ~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f--~~~~l~-------~~~~~~ll~~~gI~v~~-  438 (467)
                           ...+++++++++++++++.+.|+ +++.   +.  .+.+.++  +++.+.       .++++.|++ +||.+.. 
T Consensus       303 -----~~g~~~~~~~~~~~~~~l~~~L~-~~~~---~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~-~gi~~~~~  370 (398)
T cd00613         303 -----PEGLKEIAERAHLNANYLAKRLK-EVGG---VL--PFNGPFFHEFVLRLPPLYGIRAEDLAKALID-GGFHAPTM  370 (398)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHH-hcCC---cc--cCCCCeeEEEEEEcCCcchHHHHHHHHhhhh-cCcccccc
Confidence                 23366788999999999999998 7753   22  2223322  233222       234555554 5887754 


Q ss_pred             ---C-C--eEEeccC-ChhhHHHHHHHH
Q 012238          439 ---D-G--RISLAGL-SLAKCEYLADAI  459 (467)
Q Consensus       439 ---g-g--Ris~~~~-~~~~i~~~~~~l  459 (467)
                         + +  ||+.... +++++++++++|
T Consensus       371 ~~~~~~~lRis~~~~~t~edid~~~~~L  398 (398)
T cd00613         371 YLPVDGTLMIEPTETETKEELDALLEAL  398 (398)
T ss_pred             ccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence               2 2  8887543 779999998764

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.92  E-value=9.9e-23  Score=206.89  Aligned_cols=336  Identities=12%  Similarity=0.025  Sum_probs=209.1

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCC----cchHHHHHHHHHHHhCCCCcccccCceeeeec
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI----EGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~----~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (467)
                      +.+.|||..|.....-+.  .+|.+.+++.+.+...  ..|...    .-..++.+.+++++.    .  ..+++++  +
T Consensus        35 G~~~id~~~~~~~~~lG~--~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~----~--~~~~v~~--~  102 (413)
T cd00610          35 GNRYLDFLSGIGVLNLGH--NHPEVVEALKEQLAKL--THFSLGFFYNEPAVELAELLLALTP----E--GLDKVFF--V  102 (413)
T ss_pred             CCEEEEcCccHHhhccCC--CCHHHHHHHHHHHHhC--cCccCcccCCHHHHHHHHHHHHhCC----C--CCCEEEE--c
Confidence            457899998743222232  3677888888877542  233322    234455555555532    1  2678988  9


Q ss_pred             CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhC-------------CCCeEEeeeecC----CCCCCChhhHH
Q 012238          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-------------RVPWSEYRYYDP----KTVGLDFEGMI  220 (467)
Q Consensus       158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~-------------G~~~~~v~~~~~----~~~~~d~~~l~  220 (467)
                      +||++|+..+..++..+.++++|++.+|+|..+.......             +.+++.+|..+.    ..+..|++.++
T Consensus       103 ~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~  182 (413)
T cd00610         103 NSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALE  182 (413)
T ss_pred             CcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHH
Confidence            9999999998555444568899999999998765433322             223555555211    12345899999


Q ss_pred             HHHHcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012238          221 ADIKAAPGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (467)
Q Consensus       221 ~~l~~~~~~~~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (467)
                      +.+++.+.+..++++...+|++|..+ +.+++++|.++|++||+++|+||+|.++...+   ..... .......+   +
T Consensus       183 ~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g---~~~~~-~~~~~~~d---~  255 (413)
T cd00610         183 EALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTG---KMFAF-EHFGVEPD---I  255 (413)
T ss_pred             HHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---chhhH-hhcCCCCC---e
Confidence            99875434566777777777779876 67779999999999999999999998874321   11111 11121223   3


Q ss_pred             ecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHH--HhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQL--KRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l  377 (467)
                      .|+||.++. |+|+||++   +++++++.            +  .......+.+.+.+.+.++..+|+.-      ++  
T Consensus       256 ~t~sK~l~~-g~~~g~~~---~~~~~~~~------------~~~~~~~~~~t~~~~~~~~~a~~a~l~~l------~~--  311 (413)
T cd00610         256 VTLGKGLGG-GLPLGAVL---GREEIMDA------------FPAGPGLHGGTFGGNPLACAAALAVLEVL------EE--  311 (413)
T ss_pred             EEEcccccC-ccccEEEE---EcHHHHHh------------hccCCCCCCCCCCcCHHHHHHHHHHHHHH------Hh--
Confidence            488999995 89999995   67777776            3  22222223345566666665554211      11  


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCC-CCcccccCCcceEEecCC------------C-HHHHHHHHHcccEEEeCCC---
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKDKSG-KDWSFILRQIGMFSFTGL------------N-KAQSDNMTNKWHVYMTKDG---  440 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~g~~-~~~~~~~~~~g~f~~~~l------------~-~~~~~~ll~~~gI~v~~gg---  440 (467)
                      ....++++++++++.+.|+ .+... .......+. |.++|+.+            . .++.+.++ ++||.+.+++   
T Consensus       312 ~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gv~v~~~~~~~  388 (413)
T cd00610         312 EGLLENAAELGEYLRERLR-ELAEKHPLVGDVRGR-GLMIGIELVKDRATKPPDKELAAKIIKAAL-ERGLLLRPSGGNV  388 (413)
T ss_pred             ccHHHHHHHHHHHHHHHHH-HHHhhCCcEEEeecC-ceEEEEEEecCCCcCCcchHHHHHHHHHHH-HCCeEEeecCCCE
Confidence            2345666666677777666 54210 001112334 44544422            1 12344555 4699999973   


Q ss_pred             -eEEecc-CChhhHHHHHHHHHHHH
Q 012238          441 -RISLAG-LSLAKCEYLADAIIDSY  463 (467)
Q Consensus       441 -Ris~~~-~~~~~i~~~~~~l~~~l  463 (467)
                       |++++. .+++++++++++|++++
T Consensus       389 lR~~~~~~~t~~~i~~~~~~l~~~l  413 (413)
T cd00610         389 IRLLPPLIITEEEIDEGLDALDEAL  413 (413)
T ss_pred             EEEECCCcCCHHHHHHHHHHHHHhC
Confidence             887664 37899999999998764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.92  E-value=3.3e-22  Score=201.63  Aligned_cols=331  Identities=13%  Similarity=0.032  Sum_probs=211.4

Q ss_pred             CCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCC
Q 012238           98 LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (467)
Q Consensus        98 ~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~g  177 (467)
                      +...+++.|++++....     ..| ...+..++++.+.+.+....|.. ..+.+++  +++|++++..+  +...+.+|
T Consensus        16 GP~~~~~~V~~a~~~~~-----~~~-~~~~~~~~~~~~~~~l~~~~g~~-~~~~vi~--~~~gt~a~~~a--~~~~~~~G   84 (401)
T PLN02409         16 GPVNIPERVLRAMNRPN-----EDH-RSPAFPALTKELLEDVKYIFKTK-SGTPFIF--PTTGTGAWESA--LTNTLSPG   84 (401)
T ss_pred             CCCCCCHHHHHHhcCCC-----CCC-CCHHHHHHHHHHHHHHHHHhCCC-CCCEEEE--eCCcHHHHHHH--HHhcCCCC
Confidence            33446788888875532     222 13345556655555554433332 1234556  78899999887  44456799


Q ss_pred             CEEEEcCCCCcch--HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC-CCcEEEEeCCCCCCCCCCCCHHHHHHH
Q 012238          178 AKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLHGCAHNPTGIDPTPEQWEKI  254 (467)
Q Consensus       178 d~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~i~i~~p~NPTG~~~~~~~l~~l  254 (467)
                      |+|++++++|..+  ...++..|++++.++.+  .+..+|++.+++.+++.+ ++++++++++++||||.+++.+++.++
T Consensus        85 d~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~--~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l  162 (401)
T PLN02409         85 DKVVSFRIGQFSLLWIDQMQRLNFDVDVVESP--WGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKL  162 (401)
T ss_pred             CEEEEeCCCchhHHHHHHHHHcCCceEEEECC--CCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHH
Confidence            9999999988654  56778899999999874  334589999999998421 367899999999999999998877777


Q ss_pred             HHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhh---
Q 012238          255 ADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCE---  331 (467)
Q Consensus       255 ~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~---  331 (467)
                      ++ |+++|+++|+|+++. +..-..+.+        +. ...+++.|.+|.++.| .++||++   .+++.+++...   
T Consensus       163 ~~-~~~~g~~~vvD~v~s-~g~~~id~~--------~~-~~D~~~~s~~K~l~~P-~G~G~l~---~~~~~~~~~~~~~~  227 (401)
T PLN02409        163 LD-CAQHPALLLVDGVSS-IGALDFRMD--------EW-GVDVALTGSQKALSLP-TGLGIVC---ASPKALEASKTAKS  227 (401)
T ss_pred             Hh-hhccCcEEEEEcccc-cCCcccccc--------cc-CccEEEEcCccccCcC-CCcceeE---ECHHHHHHHhcCCC
Confidence            77 999999999999965 322111111        11 2246677779988654 3689996   56666665000   


Q ss_pred             -hhHHHHHHHHHhhcc-Cc-cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc
Q 012238          332 -VAVIQVKSQLKRLAR-PM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  408 (467)
Q Consensus       332 -~~~~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~  408 (467)
                       +.+.......+.... .. ...++...+.++..+++.-   .  +..++++++++++.++++.+.|+ ++|+    +..
T Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~---~--~~G~e~i~~~~~~l~~~l~~~L~-~~g~----~~~  297 (401)
T PLN02409        228 PRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLI---F--EEGLENVIARHARLGEATRLAVE-AWGL----KLC  297 (401)
T ss_pred             CCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHH---H--HhhHHHHHHHHHHHHHHHHHHHH-HcCC----eec
Confidence             000000000100000 01 1134444444444444311   1  23477888999999999999998 8774    433


Q ss_pred             cCC----cceEEec----CCCHH-HHHHHHHcccEEEeCC-----C---eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          409 LRQ----IGMFSFT----GLNKA-QSDNMTNKWHVYMTKD-----G---RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       409 ~~~----~g~f~~~----~l~~~-~~~~ll~~~gI~v~~g-----g---Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .+.    .+...++    +.+.+ +...+++++||.+..|     |   ||+... .+.+++.+++++|.++++++
T Consensus       298 ~~~~~~~s~~v~~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~  373 (401)
T PLN02409        298 TKKPEWRSDTVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDV  373 (401)
T ss_pred             cCChhhcccceEEEeCCCCCCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            321    2111222    34544 4567778899999876     2   898543 47799999999999998764

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.92  E-value=7.3e-22  Score=199.65  Aligned_cols=327  Identities=14%  Similarity=0.066  Sum_probs=210.3

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC------CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN------KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~------~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      .+.++|+...|.   +... +|.+++++.+.++....      ..|.......+|++.+++++..       ++ .++  
T Consensus        45 ~~~~~~~sn~yl---gl~~-~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~-------~~-~l~--  110 (402)
T TIGR01821        45 KDVTVWCSNDYL---GMGQ-HPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGK-------ES-ALV--  110 (402)
T ss_pred             eeEEEeEccCcC---CCCC-CHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCC-------Ce-EEE--
Confidence            468999988773   4444 77888888887754110      1122344567899999999642       23 344  


Q ss_pred             cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC-CCcEEEEe
Q 012238          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLH  235 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~i~i  235 (467)
                      +++|++++..+..++....+|+.|+.....|......++..|+++..++.       .|++.+++.++... .+++++++
T Consensus       111 ~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~  183 (402)
T TIGR01821       111 FTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRH-------NDVAHLEKLLQSVDPNRPKIIAF  183 (402)
T ss_pred             ECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECC-------CCHHHHHHHHHhccCCCCeEEEE
Confidence            46778887776322222226776666555666565666777877655433       47788888876432 35789999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcccCCCccc
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIG  314 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG  314 (467)
                      ++|+||||.+.+   +++|.++|++||+++|+||+|....++... .  ........ ...+++++||||.+|++|   |
T Consensus       184 e~~~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~g-~--g~~~~~~~~~~~div~~t~sKa~g~~G---G  254 (402)
T TIGR01821       184 ESVYSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPRG-G--GIAERDGLMHRIDIIEGTLAKAFGVVG---G  254 (402)
T ss_pred             cCCCCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCCC-C--ccchhccCCCCCeEEEEechhhhccCC---c
Confidence            999999999988   457777799999999999998733333110 1  11011111 123688899999999888   8


Q ss_pred             eEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc--cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          315 AMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  392 (467)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~  392 (467)
                      |++   +++++++.            +.......  ..+.+...+.++..+|+..      ++ ....++++.++++++.
T Consensus       255 ~i~---~~~~~~~~------------l~~~~~~~~~t~~~~~~~~aaa~aaL~~~------~~-~~~~~~~~~~~~~~l~  312 (402)
T TIGR01821       255 YIA---ASRKLIDA------------IRSYAPGFIFTTSLPPAIAAGATASIRHL------KE-SQDLRRAHQENVKRLK  312 (402)
T ss_pred             eee---cCHHHHHH------------HHHhCcCceecCcCCHHHHHHHHHHHHHh------hc-CHHHHHHHHHHHHHHH
Confidence            884   78888776            44333321  2245555555555555321      11 1344556678889999


Q ss_pred             HHhhhccCCCCCcccccCCcceEEe-cCC---CHHHHHHHHHcccEEEeCC-------C----eEEecc-CChhhHHHHH
Q 012238          393 DSLSAKDKSGKDWSFILRQIGMFSF-TGL---NKAQSDNMTNKWHVYMTKD-------G----RISLAG-LSLAKCEYLA  456 (467)
Q Consensus       393 ~~l~~~~g~~~~~~~~~~~~g~f~~-~~l---~~~~~~~ll~~~gI~v~~g-------g----Ris~~~-~~~~~i~~~~  456 (467)
                      +.|+ ++|    +++..+.+++..+ ++.   ..++.+++++++||++.+.       |    ||++.. .+++++++++
T Consensus       313 ~~L~-~~g----~~~~~~~~~i~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~  387 (402)
T TIGR01821       313 NLLE-ALG----IPVIPNPSHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLV  387 (402)
T ss_pred             HHHH-HcC----CCcCCCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHH
Confidence            9998 877    4556666664322 232   1245566666679998652       2    888642 3789999999


Q ss_pred             HHHHHHHHhc
Q 012238          457 DAIIDSYHNV  466 (467)
Q Consensus       457 ~~l~~~l~~~  466 (467)
                      ++|+++++++
T Consensus       388 ~~l~~~~~~~  397 (402)
T TIGR01821       388 EALLLVWDRL  397 (402)
T ss_pred             HHHHHHHHHc
Confidence            9999998764

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.91  E-value=9.5e-22  Score=199.17  Aligned_cols=326  Identities=14%  Similarity=0.087  Sum_probs=209.7

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC-C-----CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-E-----NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~-~-----~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      .+.++|+..+|.   +... +|.+.+++.+.+... .     ...|.+.....+|++.+|+++. .      ++.+++  
T Consensus        46 ~~~~~~~s~dyl---gl~~-~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g-~------~~~~~~--  112 (407)
T PRK09064         46 REVTVWCSNDYL---GMGQ-HPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG-K------EAALVF--  112 (407)
T ss_pred             ceEEEEECCCCc---CCCC-CHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhC-C------CcEEEE--
Confidence            468999987763   5554 677888888776431 1     0123355567889999999863 2      344554  


Q ss_pred             cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC-CCcEEEEe
Q 012238          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLH  235 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~i~i  235 (467)
                       ++|+++...+..++....+++.|+.....+......++..|+++..++.       .|++.+++.++... ++++++++
T Consensus       113 -~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~  184 (407)
T PRK09064        113 -TSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRH-------NDVAHLEELLAAADPDRPKLIAF  184 (407)
T ss_pred             -CcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECC-------CCHHHHHHHHHhccCCCCeEEEE
Confidence             5566666654222222236666666655565555666777777655543       47888888886432 46789999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcccCCCccc
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIG  314 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG  314 (467)
                      ++++||+|.+.+   +++|.++|+++|+++|+||+|....++.. ..  .+....+. ...+++++||||.||++|   |
T Consensus       185 ~~v~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~-g~--g~~~~~~~~~~~div~~t~sKa~g~~G---G  255 (407)
T PRK09064        185 ESVYSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPR-GG--GIAERDGLMDRIDIIEGTLAKAFGVMG---G  255 (407)
T ss_pred             eCCCCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCC-CC--ChHHhcCCCCCCeEEEEecchhhhccC---c
Confidence            999999999887   55677779999999999999873223311 11  11111111 134788999999999888   9


Q ss_pred             eEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc--cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          315 AMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  392 (467)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~  392 (467)
                      |++   +++++++.            +.....+.  ..+.+...+.++...|+   +    .+.....+++++++++++.
T Consensus       256 ~~~---~~~~~~~~------------l~~~~~~~~~t~~~~~~~~~aa~~al~---~----~~~~~~~~~~~~~~~~~l~  313 (407)
T PRK09064        256 YIA---GSAALVDA------------VRSYAPGFIFTTSLPPAIAAAALASIR---H----LKESNEERERHQERAAKLK  313 (407)
T ss_pred             eEe---cCHHHHHH------------HHHhCccccccCcCCHHHHHHHHHHHH---H----HhcCHHHHHHHHHHHHHHH
Confidence            984   77887776            44433322  22344444444444432   1    1112344678888999999


Q ss_pred             HHhhhccCCCCCcccccCCcceEEec--CC---CHHHHHHHHHcccEEEeCC-------C----eEEecc-CChhhHHHH
Q 012238          393 DSLSAKDKSGKDWSFILRQIGMFSFT--GL---NKAQSDNMTNKWHVYMTKD-------G----RISLAG-LSLAKCEYL  455 (467)
Q Consensus       393 ~~l~~~~g~~~~~~~~~~~~g~f~~~--~l---~~~~~~~ll~~~gI~v~~g-------g----Ris~~~-~~~~~i~~~  455 (467)
                      +.|+ ++|    +++..+.+++ +++  +.   ..++.+++++++||++.+.       |    ||+++. .++++++++
T Consensus       314 ~~L~-~~g----~~~~~~~~~i-v~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l  387 (407)
T PRK09064        314 AALD-AAG----IPVMPNESHI-VPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHL  387 (407)
T ss_pred             HHHH-HcC----CCCCCCCCCE-EEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHH
Confidence            9999 876    4555555554 333  22   1244566766679998652       2    888753 378999999


Q ss_pred             HHHHHHHHHhc
Q 012238          456 ADAIIDSYHNV  466 (467)
Q Consensus       456 ~~~l~~~l~~~  466 (467)
                      +++|+++++++
T Consensus       388 ~~~l~~~~~~~  398 (407)
T PRK09064        388 VEALVEVWARL  398 (407)
T ss_pred             HHHHHHHHHHc
Confidence            99999998764

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.91  E-value=5.6e-22  Score=198.84  Aligned_cols=334  Identities=11%  Similarity=0.021  Sum_probs=213.0

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.+||..|..-..-|.  .+|.|.+++.+.++... . . ......+++..+++++....+    .+++++  +++|+
T Consensus        28 G~~~lD~~s~~~~~~lG~--~~p~v~~a~~~~~~~~~-~-~-~~~~~~~~~~~la~~l~~~~~----~~~~~~--~~sG~   96 (377)
T PRK02936         28 GKTYLDFTSGIAVCNLGH--CHPTVTKAVQEQLDDIW-H-V-SNLFTNSLQEEVASLLAENSA----GDLVFF--CNSGA   96 (377)
T ss_pred             CCEEEECCcchhhccCCC--CCHHHHHHHHHHHHhcc-c-c-ccccCCHHHHHHHHHHHhcCC----CCEEEE--eCCcH
Confidence            357899988862111243  36788888888875421 1 1 223456788999999876432    247877  89999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-HHhhCCCCeE---EeeeecCCCC--CCChhhHHHHHHcCCCCcEEEEe
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKN-IFNDARVPWS---EYRYYDPKTV--GLDFEGMIADIKAAPGGSFILLH  235 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~-~~~~~G~~~~---~v~~~~~~~~--~~d~~~l~~~l~~~~~~~~~i~i  235 (467)
                      +|...+.++.......++|++.+++|..... .+...|....   ..+..++..+  -.|++.+++.+.   ++++++++
T Consensus        97 ~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~ii~  173 (377)
T PRK02936         97 EANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMN---EEVAAVML  173 (377)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhcc---CCeEEEEE
Confidence            9999985432222333679999999974432 2222222110   0111101000  127889988886   56788888


Q ss_pred             CCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccc
Q 012238          236 GCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (467)
Q Consensus       236 ~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG  314 (467)
                      ..+++++|.. .+++.+++|.++|++||+++|+||+|.++...+   ..+....+ ...+++   .+|||.++ +|+|+|
T Consensus       174 e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g---~~~~~~~~-~~~~di---~t~sK~l~-~G~~ig  245 (377)
T PRK02936        174 EVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTG---TLFAYEQF-GLDPDI---VTVAKGLG-NGIPVG  245 (377)
T ss_pred             ecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---hhhHHHhh-CCCCcE---EEEccccc-CCCccE
Confidence            9999999987 578999999999999999999999998876532   12121111 222233   36999999 999999


Q ss_pred             eEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          315 AMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS  394 (467)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~  394 (467)
                      |++   +++++++.            +.........+.+.+.|.++..+|+...        -+...++++++++.+.+.
T Consensus       246 ~v~---~~~~~~~~------------~~~~~~~~t~~~~~~~~aaa~a~l~~~~--------~~~~~~~~~~~~~~l~~~  302 (377)
T PRK02936        246 AMI---GKKELGTA------------FGPGSHGSTFGGNPLAMAAAKEVLQVIK--------QPSFLEEVQEKGEYFLQK  302 (377)
T ss_pred             EEE---EcHHHHhh------------ccCCCCCCCCCCCHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHH
Confidence            995   77777776            5433333344577788888887775321        012334555566666666


Q ss_pred             hhhcc--CCCCCcccccCCcceEEecCCC--HHHHHHHHHcccEEEeCCC----eEEe-ccCChhhHHHHHHHHHHHH
Q 012238          395 LSAKD--KSGKDWSFILRQIGMFSFTGLN--KAQSDNMTNKWHVYMTKDG----RISL-AGLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       395 l~~~~--g~~~~~~~~~~~~g~f~~~~l~--~~~~~~ll~~~gI~v~~gg----Ris~-~~~~~~~i~~~~~~l~~~l  463 (467)
                      |+ +.  +++. +....+ .|+++|+.+.  .+.+.+.+.++||.+.++|    ||++ ...+++++++++++|++++
T Consensus       303 L~-~~~~~~~~-~~~v~~-~g~~~~i~~~~~~~~~~~~l~~~gv~v~~~g~~~lRi~p~~~~~~~~i~~~i~~l~~~~  377 (377)
T PRK02936        303 LQ-EELEHLEC-VKNIRG-KGLMIGIECTEEVAPVIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKKVL  377 (377)
T ss_pred             HH-HHHhhCCc-EEeEee-cceEEEEEecchHHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence            65 42  1211 122223 4678888663  3334445556799999876    8885 3448899999999998764

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.91  E-value=2.8e-22  Score=202.60  Aligned_cols=329  Identities=16%  Similarity=0.102  Sum_probs=210.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC-CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~-~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +.+.|||..|.-.+.-|.  -.|.+.+++.+.++.... ..+....-..++.+.++++. .       .+.+.+  +++|
T Consensus        39 G~~~iD~~~~~~~~~lGh--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-------~~~~~~--~~sG  106 (403)
T PRK05093         39 GKEYIDFAGGIAVTALGH--CHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDAT-F-------AERVFF--ANSG  106 (403)
T ss_pred             CCEEEEcCcCHHhccCCC--CCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhC-C-------CCEEEE--eCch
Confidence            357899987732122243  367888888887754211 11111111234555555542 1       247888  8999


Q ss_pred             hhHHHHHHHHHHHhC------CCCEEEEcCCCCcchHH-HHhhCC------------CCeEEeeeecCCCCCCChhhHHH
Q 012238          161 TGSLRLAAALIERYF------PGAKVLISSPTWGNHKN-IFNDAR------------VPWSEYRYYDPKTVGLDFEGMIA  221 (467)
Q Consensus       161 t~al~l~~~~l~~~~------~gd~Vlv~~P~y~~~~~-~~~~~G------------~~~~~v~~~~~~~~~~d~~~l~~  221 (467)
                      ++|...+..+.....      ..++|+..+-+|.+... .+...|            .+++.++.       .|++.+++
T Consensus       107 seA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~  179 (403)
T PRK05093        107 AEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF-------NDLAAVKA  179 (403)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-------CCHHHHHH
Confidence            999999865543331      23578888888866533 222111            11222221       37889988


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012238          222 DIKAAPGGSFILLHGCAHNPTGIDP--TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (467)
Q Consensus       222 ~l~~~~~~~~~i~i~~p~NPTG~~~--~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (467)
                      .+.   +++++++++ |.||+|.++  +.+.+++|+++|++||+++|+||+|.++.+.+   ..++. ......++   +
T Consensus       180 ~l~---~~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g---~~~~~-~~~~~~pd---i  248 (403)
T PRK05093        180 VID---DHTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTG---DLFAY-MHYGVTPD---I  248 (403)
T ss_pred             Hhc---CCeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc---cchhh-hhcCCCCC---E
Confidence            886   456677666 888888775  88999999999999999999999999886543   11111 11111122   5


Q ss_pred             ecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM  379 (467)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~  379 (467)
                      .||||.++ +|+|+||++   .++++++.            +.......+.+.+.+.|.++..+|+..      .  -.+
T Consensus       249 ~s~sK~l~-~G~rig~vv---~~~~i~~~------------l~~~~~~~t~~~~~~~~~aa~a~L~~~------~--~~~  304 (403)
T PRK05093        249 LTSAKALG-GGFPIGAML---TTAEIASH------------FKVGTHGSTYGGNPLACAVAEAVFDII------N--TPE  304 (403)
T ss_pred             EEeccccc-CCcceEEEE---EcHHHHhh------------cCCCCCCCCCCCCHHHHHHHHHHHHHH------h--hcc
Confidence            68999999 999999996   77777776            544333334456777787777765321      0  124


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-------CHHHHHHHHHcccEEEeCCC----eEEeccC-
Q 012238          380 MAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-------NKAQSDNMTNKWHVYMTKDG----RISLAGL-  447 (467)
Q Consensus       380 ~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-------~~~~~~~ll~~~gI~v~~gg----Ris~~~~-  447 (467)
                      ..++++++++++.+.|+ +++....+....+.+|+++|+.+       +.++++.+++ +||.+.++|    ||+++.. 
T Consensus       305 ~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~~-~Gv~v~~~g~~~lRl~~~~~~  382 (403)
T PRK05093        305 VLEGVKARRQRFVDGLQ-KINQKYGVFSEIRGMGLLIGAELKPQYKGRARDFLNAAAE-EGVMVLVAGPDVLRFAPSLVI  382 (403)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHhhCCCeEeEeeCceEEEEEecCcchhHHHHHHHHHHH-CCeEEecCCCCEEEEeCCCCC
Confidence            55778888899999988 65321111123445677877643       2345667776 599999865    8865543 


Q ss_pred             ChhhHHHHHHHHHHHHHhc
Q 012238          448 SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       448 ~~~~i~~~~~~l~~~l~~~  466 (467)
                      +++++++++++|.+++.++
T Consensus       383 ~~~~i~~~~~~l~~~l~~~  401 (403)
T PRK05093        383 EEADIDEGLARFEKAVAKV  401 (403)
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            8899999999999998754

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.91  E-value=2.8e-22  Score=200.85  Aligned_cols=314  Identities=16%  Similarity=0.137  Sum_probs=205.1

Q ss_pred             cCCCCCCCCchHHHHHHHHHHHhcCCC--C----cCC--CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHH
Q 012238           93 YRTEELQPYVLDVVKKAENLMLERGEN--K----EYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (467)
Q Consensus        93 ~~d~~~~p~~~~~v~~a~~~~~~~~~~--~----~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al  164 (467)
                      |+|.++.+++++.+.+++.+.+.....  .    .+.  -.....++|+.++++++..     +++++++  |+|+++++
T Consensus         2 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~v~~--~~g~t~a~   74 (373)
T cd06453           2 YLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAP-----SPDEIIF--TRNTTEAI   74 (373)
T ss_pred             cccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCC-----CCCeEEE--eCCHHHHH
Confidence            345556666688899998887632110  0    000  1234678999999997543     1568888  99999999


Q ss_pred             HHHHHHHHHhC---CCCEEEEcCCCCcch----HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q 012238          165 RLAAALIERYF---PGAKVLISSPTWGNH----KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (467)
Q Consensus       165 ~l~~~~l~~~~---~gd~Vlv~~P~y~~~----~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~  237 (467)
                      +++  +.+...   +||+|++++|+|+..    ...++..|++++.++.+  .++.+|++.+++.+.   ++++++++++
T Consensus        75 ~~~--~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~---~~~~~v~~~~  147 (373)
T cd06453          75 NLV--AYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD--DDGQLDLEALEKLLT---ERTKLVAVTH  147 (373)
T ss_pred             HHH--HHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecC--CCCCcCHHHHHHHhc---CCceEEEEeC
Confidence            987  344445   899999999999764    34556789999999984  456799999999997   4778999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       238 p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                      ++||||.+.+.+   +|+++|+++|++|++|++|......   .+   +   ... ...+++.|++|.++.  .++||++
T Consensus       148 ~~~~tG~~~~~~---~i~~~~~~~~~~li~D~a~~~~~~~---~~---~---~~~-~~d~~~~s~~K~~~~--~g~g~~~  212 (373)
T cd06453         148 VSNVLGTINPVK---EIGEIAHEAGVPVLVDGAQSAGHMP---VD---V---QDL-GCDFLAFSGHKMLGP--TGIGVLY  212 (373)
T ss_pred             cccccCCcCCHH---HHHHHHHHcCCEEEEEhhhhcCcee---ee---c---ccc-CCCEEEeccccccCC--CCcEEEE
Confidence            999999999865   6777799999999999997532211   11   1   011 224667899999985  5579885


Q ss_pred             EecCCHHHHhhhhhhhHHHHHHHHHhhccC--------------------c-cCCCchHHHHHHHHHhCChhhHHHHHHH
Q 012238          318 VVCSSSDLAARCCEVAVIQVKSQLKRLARP--------------------M-YSNPPVHGARIVANVVGNPALFDEWKAE  376 (467)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~  376 (467)
                         .+++++++            +......                    . ...++.....++..++.  .+.   ...
T Consensus       213 ---~~~~~~~~------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~--~l~---~~g  272 (373)
T cd06453         213 ---GKEELLEE------------MPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAID--YLE---KIG  272 (373)
T ss_pred             ---EchHHhhc------------CCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHH--HHH---HcC
Confidence               56666665            3221100                    0 01233333222222221  111   112


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCccccc---CCcceEEec--CCCHHHHHHHHHcccEEEeCC------------
Q 012238          377 MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL---RQIGMFSFT--GLNKAQSDNMTNKWHVYMTKD------------  439 (467)
Q Consensus       377 l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~---~~~g~f~~~--~l~~~~~~~ll~~~gI~v~~g------------  439 (467)
                      +++++++.++.++++.+.|+ +++.   ++...   ..++++.+.  +.+.+.+.+.++++||.+.+|            
T Consensus       273 ~~~~~~~~~~~~~~l~~~l~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~  348 (373)
T cd06453         273 MEAIAAHEHELTAYALERLS-EIPG---VRVYGDAEDRAGVVSFNLEGIHPHDVATILDQYGIAVRAGHHCAQPLMRRLG  348 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCC---eEEeCCccccCCeEEEEECCcCHHHHHHHHHHCCEEeccCccchhHHHHHhC
Confidence            46677778888899999988 7631   34432   234444332  335555554555579988643            


Q ss_pred             --C--eEEeccC-ChhhHHHHHHHH
Q 012238          440 --G--RISLAGL-SLAKCEYLADAI  459 (467)
Q Consensus       440 --g--Ris~~~~-~~~~i~~~~~~l  459 (467)
                        +  |||++.. +++++++++++|
T Consensus       349 ~~~~iRis~~~~~t~~di~~~~~~l  373 (373)
T cd06453         349 VPGTVRASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             CCCeEEEEecCCCCHHHHHHHHhhC
Confidence              2  9998743 678999998864

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.91  E-value=2.2e-21  Score=194.88  Aligned_cols=324  Identities=14%  Similarity=0.034  Sum_probs=208.2

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-------CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-------NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-------~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      +.|||.-=..    .-| +++.+.+++.+......       ...+.....+.++|+.+|++++.        +++++  
T Consensus        19 ~~~~~~~~~~----~~p-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~--------~~~~~--   83 (387)
T PRK09331         19 EFINLDPIQR----GGI-LTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGM--------DEARV--   83 (387)
T ss_pred             cccccChhhc----CCC-CCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCC--------CcEEE--
Confidence            5677653222    223 37889999988773211       11122234589999999999643        35667  


Q ss_pred             cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC----CCCcEE
Q 012238          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA----PGGSFI  232 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~----~~~~~~  232 (467)
                      ++|+++++.++  +...+.+||+|+++.++|......++..|++++.++...++++.+|++.+++.+++.    .+++++
T Consensus        84 ~~g~t~a~~~a--l~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~l  161 (387)
T PRK09331         84 THGAREGKFAV--MHSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPAL  161 (387)
T ss_pred             eCCHHHHHHHH--HHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEE
Confidence            89999999987  455567999999999998777777889999999998742346779999999999742    136789


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCc
Q 012238          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER  312 (467)
Q Consensus       233 i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R  312 (467)
                      +++++|+||||...+   +++|+++|+++|+++|+|++|..-...   .+..      .. ...+++.|++|.++ .+.|
T Consensus       162 V~l~~~~~~tG~~~~---l~~I~~la~~~g~~livD~a~~~g~~~---~~~~------~~-g~D~~~~s~~K~l~-~~~~  227 (387)
T PRK09331        162 ALLTHVDGNYGNLAD---AKKVAKVAHEYGIPFLLNGAYTVGRMP---VDGK------KL-GADFIVGSGHKSMA-ASAP  227 (387)
T ss_pred             EEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCcccCCcC---CCHH------Hc-CCCEEEeeCccccc-CCCC
Confidence            999999999998766   557777799999999999997632211   1111      11 23578999999998 4568


Q ss_pred             cceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc--------cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012238          313 IGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM--------YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  384 (467)
Q Consensus       313 iG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~  384 (467)
                      +||++   .++++++.            +....+.+        ..+.+.....++...+.  .    +.+.++ ..++.
T Consensus       228 ~G~l~---~~~~~i~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~--~----~~~~~~-~~~~~  285 (387)
T PRK09331        228 SGVLA---TTEEYADK------------VFRTSRKFGVKEVELLGCTLRGAPLVTLMASFP--H----VVERVK-RWDEE  285 (387)
T ss_pred             EEEEE---ECHHHHhh------------cccccCCCcccceeeeceecCchHHHHHHHHHH--H----HHHHHH-HHHHH
Confidence            99985   66777776            33221111        11111111111111111  1    112222 33444


Q ss_pred             HHHHHHHHHHhhhcc-CCCCCccccc---CCcceEE-e-cCC---------C-HHHHHHHHHcccEEEeCCC-----eEE
Q 012238          385 KNVRQKLFDSLSAKD-KSGKDWSFIL---RQIGMFS-F-TGL---------N-KAQSDNMTNKWHVYMTKDG-----RIS  443 (467)
Q Consensus       385 ~~~r~~l~~~l~~~~-g~~~~~~~~~---~~~g~f~-~-~~l---------~-~~~~~~ll~~~gI~v~~gg-----Ris  443 (467)
                      .++++++.+.|+ ++ |    ++...   ...++.. . .++         + .++.+.| +++||...+.|     |+.
T Consensus       286 ~~~~~~l~~~L~-~l~g----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~gI~~~~~~~~~i~ri~  359 (387)
T PRK09331        286 VKKARWFVDELE-KIEG----FKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEEL-KKRGIHGIKPGATKEFKLS  359 (387)
T ss_pred             HHHHHHHHHHHh-cCCC----EEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHH-HHcCceEEccCCceEEEEE
Confidence            566778888998 77 5    44442   2223221 1 111         1 1234455 55699954443     665


Q ss_pred             eccCChhhHHHHHHHHHHHHHhc
Q 012238          444 LAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       444 ~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ..+.+++++++++++|+++++++
T Consensus       360 ~~g~t~~di~~l~~aL~~i~~~~  382 (387)
T PRK09331        360 TYGLTWEQVEYVADAFKEIAEKY  382 (387)
T ss_pred             eccCCHHHHHHHHHHHHHHHHhc
Confidence            53458899999999999998764

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.91  E-value=1.9e-21  Score=193.46  Aligned_cols=274  Identities=14%  Similarity=0.153  Sum_probs=188.7

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcch----HHHHhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH----KNIFNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~----~~~~~~~G~  199 (467)
                      +.....+|++++|++.+..        ..++  ++||++++.++   +..+.+||+|+++.|+|+..    ...++..|+
T Consensus        50 ~~pt~~~le~~la~l~g~~--------~~~~--~~sG~~ai~~~---~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~  116 (366)
T PRK08247         50 GNPTRGVLEQAIADLEGGD--------QGFA--CSSGMAAIQLV---MSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNV  116 (366)
T ss_pred             CCchHHHHHHHHHHHhCCC--------cEEE--EcCHHHHHHHH---HHHhCCCCEEEEecCCcCcHHHHHHHHhhccCc
Confidence            5566889999999996543        2344  68899999875   45567999999999999864    445567899


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++.       .|++.+++.++   ++++++++++|+||+|.   ..++++|+++|+++|+++|+|++|....... 
T Consensus       117 ~v~~vd~-------~d~~~l~~~i~---~~tklv~le~P~NP~~~---~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~-  182 (366)
T PRK08247        117 RFVYVNT-------ASLKAIEQAIT---PNTKAIFIETPTNPLMQ---ETDIAAIAKIAKKHGLLLIVDNTFYTPVLQR-  182 (366)
T ss_pred             eEEEECC-------CCHHHHHHhcc---cCceEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCccccccC-
Confidence            8888765       48899999887   57889999999999864   6778899999999999999999985332211 


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccC-CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLY-AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                           ++    . ....++++|+||.++.+ +++.||++  +.++++.+.            +...+.......+...+.
T Consensus       183 -----p~----~-~g~di~i~S~sK~~~g~~d~~~G~iv--~~~~~l~~~------------~~~~~~~~g~~~s~~~a~  238 (366)
T PRK08247        183 -----PL----E-EGADIVIHSATKYLGGHNDVLAGLVV--AKGQELCER------------LAYYQNAAGAVLSPFDSW  238 (366)
T ss_pred             -----ch----h-cCCcEEEeecceeccCCCceeeeEEe--cChHHHHHH------------HHHHHHhcCCCCChHHHH
Confidence                 11    1 13468999999999743 46889885  344666665            433333333345555666


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcc-c-ccCCcceEEecCC-CHHHHHHHHHc----
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS-F-ILRQIGMFSFTGL-NKAQSDNMTNK----  431 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~-~-~~~~~g~f~~~~l-~~~~~~~ll~~----  431 (467)
                      ++...|..          +....++++++++.+.+.|+ +.+  + +. + .++.||+|.|. + ..+...++++.    
T Consensus       239 l~~~~l~t----------l~~r~~~~~~~a~~l~~~L~-~~p--~-v~~v~~P~~gg~~sf~-~~~~~~~~~~~~~l~~~  303 (366)
T PRK08247        239 LLIRGMKT----------LALRMRQHEENAKAIAAFLN-EQP--G-VTDVLYPGRGGMLSFR-LQDEEWVNPFLKSLKLI  303 (366)
T ss_pred             HHHhccCc----------HHHHHHHHHHHHHHHHHHHH-hCC--C-eeEEecCCcCcEEEEE-ECCHHHHHHHHHcCCcc
Confidence            65554432          33455567889999999998 652  2 33 3 44489999884 3 23333333331    


Q ss_pred             ---------ccEEEeCC---------------C------eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          432 ---------WHVYMTKD---------------G------RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       432 ---------~gI~v~~g---------------g------Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                               ..+.+.|+               |      |||++-   |+.+.+++-|.++++.+
T Consensus       304 ~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGl---E~~~dl~~dl~~al~~~  365 (366)
T PRK08247        304 TFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGI---ENVEDLIADLKQAFKQV  365 (366)
T ss_pred             eEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHhhc
Confidence                     22333343               2      999987   67777777887777654

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.91  E-value=7e-22  Score=198.29  Aligned_cols=323  Identities=14%  Similarity=0.049  Sum_probs=205.4

Q ss_pred             cCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC---------CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238           93 YRTEELQPYVLDVVKKAENLMLERGENKEYLP---------IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (467)
Q Consensus        93 ~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~---------~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (467)
                      |+|..+..++++.+++++.+.+...  ..+..         ..-..++|+.++++++..      +++|++  |.|+|++
T Consensus         2 yld~aa~~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~------~~~i~~--t~~~t~a   71 (379)
T TIGR03402         2 YLDNNATTRVDPEVLEAMLPYFTEY--FGNPSSMHSFGGEVGKAVEEAREQVAKLLGAE------PDEIIF--TSGGTES   71 (379)
T ss_pred             cCCCcCCCCCCHHHHHHHHHHHHhc--CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCC------CCeEEE--eCcHHHH
Confidence            4566666666889999998876431  12211         123567888888886543      678988  9999999


Q ss_pred             HHHHHHHHHHh-CCCCEEEEcCCCCcchHH---HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          164 LRLAAALIERY-FPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       164 l~l~~~~l~~~-~~gd~Vlv~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +.++...+... .+||+|++...+|+.+..   .++..|++++.++.+  .++.+|++.+++.++   ++++++++++++
T Consensus        72 ~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~g~~~~~~l~~~i~---~~~~lv~i~~~~  146 (379)
T TIGR03402        72 DNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVD--EEGRLDLEELRAAIT---DDTALVSVMWAN  146 (379)
T ss_pred             HHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccC--CCCcCCHHHHHHhcC---CCcEEEEEEccc
Confidence            99873332112 356889998888876543   344579999999873  346799999999987   577899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||.+++.+   +|.++|+++|+++++|+++. +..-.  .+.       ....-.+++.|.+|.+|++|  +|++++ 
T Consensus       147 n~tG~~~~~~---~I~~l~~~~g~~vivD~~~~-~g~~~--~~~-------~~~~~D~~~~s~~K~~gp~G--~g~l~v-  210 (379)
T TIGR03402       147 NETGTIFPIE---EIGEIAKERGALFHTDAVQA-VGKIP--IDL-------KEMNIDMLSLSGHKLHGPKG--VGALYI-  210 (379)
T ss_pred             CCeeecccHH---HHHHHHHHcCCEEEEECccc-ccccc--cCc-------ccCCCCEEEEcHHHcCCCCc--eEEEEE-
Confidence            9999999976   67777999999999999964 22111  111       11123466778889888777  577752 


Q ss_pred             cCCHHHHhhhhhhhHHHHH-HHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012238          320 CSSSDLAARCCEVAVIQVK-SQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK  398 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~  398 (467)
                       .+......    .   +. .......+.  ..++..+..++..+++   +.   .+.++...+++++.++.+.+.|+ +
T Consensus       211 -~~~~~~~p----~---~~g~~~~~~~~~--gt~~~~~~~~l~~al~---~~---~~~~~~~~~~~~~l~~~l~~~l~-~  273 (379)
T TIGR03402       211 -RKGTRFRP----L---LRGGHQERGRRA--GTENVPGIVGLGKAAE---LA---TEHLEEENTRVRALRDRLEAGLL-A  273 (379)
T ss_pred             -CCCCCCCC----c---ccCCccCCCcCC--CCccHHHHHHHHHHHH---HH---HHhHHHHHHHHHHHHHHHHHHHH-h
Confidence             32211110    0   00 000011111  1222222222322231   11   22356667788888888888887 4


Q ss_pred             -cCCCCCcccccC-----CcceEEe-cCCCHHHHHHHHHcccEEEeCC-------------------------C--eEEe
Q 012238          399 -DKSGKDWSFILR-----QIGMFSF-TGLNKAQSDNMTNKWHVYMTKD-------------------------G--RISL  444 (467)
Q Consensus       399 -~g~~~~~~~~~~-----~~g~f~~-~~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ris~  444 (467)
                       +.  + +.+..+     .+.+.+| .+.+.+.+...|+++||.+..|                         |  |+|+
T Consensus       274 ~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~  350 (379)
T TIGR03402       274 RIP--D-ARLNGDPTKRLPNTVNISFEYIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSL  350 (379)
T ss_pred             hCC--C-EEEeCCCccCCCCEEEEEecCCCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEc
Confidence             32  1 233322     1223333 3556666666667789998753                         3  9998


Q ss_pred             ccC-ChhhHHHHHHHHHHHHHhc
Q 012238          445 AGL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       445 ~~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                      +.. +++|+++++++|+++++++
T Consensus       351 ~~~~t~~di~~~~~~l~~~~~~~  373 (379)
T TIGR03402       351 SRYNTEEDIDYVLEVLPPIIARL  373 (379)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Confidence            764 6699999999999988753

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.91  E-value=5.7e-22  Score=190.53  Aligned_cols=328  Identities=18%  Similarity=0.109  Sum_probs=229.3

Q ss_pred             ccCCCCCCCCchHHHHHHHHHHHhcC-----CCCcCC--CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHH
Q 012238           92 AYRTEELQPYVLDVVKKAENLMLERG-----ENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (467)
Q Consensus        92 ~~~d~~~~p~~~~~v~~a~~~~~~~~-----~~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al  164 (467)
                      .|+|.+..+++.|.+++++...+...     ..+.|+  ....+++.|+.+|+.++..      +++|++  |+|||++.
T Consensus         3 iYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~------~~eIiF--TSG~TEsn   74 (386)
T COG1104           3 IYLDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGAD------PEEIIF--TSGATESN   74 (386)
T ss_pred             ccccccccCCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCC------CCeEEE--ecCCcHHH
Confidence            46777777777999999998887432     112332  2345788999999998765      789999  99999999


Q ss_pred             HHHHHHHH--HhC----CCCEEEEcCCCCcchHHHHhhC---CCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238          165 RLAAALIE--RYF----PGAKVLISSPTWGNHKNIFNDA---RVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (467)
Q Consensus       165 ~l~~~~l~--~~~----~gd~Vlv~~P~y~~~~~~~~~~---G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i  235 (467)
                      +++  +..  ...    .|.+|+++.-.++...+.++.+   |+++.++|+  +.++.+|++.|+++++   +++.+|.+
T Consensus        75 Nla--I~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V--~~~G~v~~e~L~~al~---~~T~LVSi  147 (386)
T COG1104          75 NLA--IKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPV--DSNGLVDLEQLEEALR---PDTILVSI  147 (386)
T ss_pred             HHH--HHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCC--CCCCeEcHHHHHHhcC---CCceEEEE
Confidence            998  333  222    4779999998888877777655   999999998  4477899999999999   68999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccce
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  315 (467)
                      ...||-||++.|.+   +|.++|+++++++.+|.+ |.+.-  .+.+.       ....-.+...|-.|.+|+.|  +|.
T Consensus       148 m~aNnE~G~IQpI~---ei~~i~k~~~i~fHvDAv-Qa~Gk--ipi~~-------~~~~vD~ls~SaHK~~GpkG--iGa  212 (386)
T COG1104         148 MHANNETGTIQPIA---EIGEICKERGILFHVDAV-QAVGK--IPIDL-------EELGVDLLSFSAHKFGGPKG--IGA  212 (386)
T ss_pred             EecccCeeecccHH---HHHHHHHHcCCeEEEehh-hhcCc--eeccc-------cccCcceEEeehhhccCCCc--eEE
Confidence            99999999998877   566669999999999999 55432  21111       11123567888899999988  688


Q ss_pred             EEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012238          316 MNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL  395 (467)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l  395 (467)
                      +++  .+.--...     +..-.. -.+-.+..+.+.+.+....  .+++..      .++++....++++.|++|.+.|
T Consensus       213 Lyv--~~~~~~~p-----~i~GGg-QE~g~RsGTenv~~Ivg~~--~A~~~a------~~~~~~~~~~~~~lr~~l~~~l  276 (386)
T COG1104         213 LYV--RPGVRLEP-----LIHGGG-QERGLRSGTENVPGIVGFG--KAAEIA------VEELEEENARLRKLRDRLEDGL  276 (386)
T ss_pred             EEE--CCCCccCc-----eeccCc-CCCCCCCCCccHHHHHHHH--HHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            862  22111111     000000 0111233344555544222  222211      3446677888999999999999


Q ss_pred             hhcc-CC---CCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCC-----------------C----------eEEe
Q 012238          396 SAKD-KS---GKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKD-----------------G----------RISL  444 (467)
Q Consensus       396 ~~~~-g~---~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~g-----------------g----------Ris~  444 (467)
                      . +. +.   .+.-....|..-.|.|.++..|.+...|+.+||++..|                 |          ||||
T Consensus       277 ~-~~~p~~~~~g~~~~rlP~~~~~~f~gv~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~  355 (386)
T COG1104         277 L-EIIPDVYLNGDDEPRLPNILNFSFPGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSL  355 (386)
T ss_pred             H-hcCCcEEEcCCcccCCCCeEEEEeCCCcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEc
Confidence            8 54 11   01112234444556777889999888888889999887                 1          9999


Q ss_pred             ccC-ChhhHHHHHHHHHHHHHhc
Q 012238          445 AGL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       445 ~~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                      +.. ++++++++++.++++++++
T Consensus       356 g~~tt~eei~~~~~~l~~~i~~l  378 (386)
T COG1104         356 GRFTTEEEIDAAAEALKEIIKRL  378 (386)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Confidence            876 5589999999999999875

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.90  E-value=1.3e-21  Score=195.17  Aligned_cols=323  Identities=14%  Similarity=0.048  Sum_probs=202.3

Q ss_pred             CCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCE
Q 012238          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK  179 (467)
Q Consensus       100 p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~  179 (467)
                      ..+.+.|++++.... ......|  ..-..++|+.++++++...    +++.|++  |.|||++++.+  +...+.+||+
T Consensus        12 ~~~~~~v~~~~~~~~-~~~~~~~--~~~~~~~r~~la~l~~~~~----~~~~i~~--t~~~t~al~~~--~~~l~~~~~~   80 (363)
T TIGR02326        12 LTTSRTVKEAMLFDW-CTWDSDY--NIVVEQIRQQLLALATAEE----GYTSVLL--QGSGTFAVEAV--IGSAVPKDGK   80 (363)
T ss_pred             CCCCHHHHHHhCCCC-CCCChHH--HHHHHHHHHHHHHHhCCCC----CceEEEE--cCCCHHHHHHH--HHhcCCCCCe
Confidence            344677777664432 1111111  1235678888998875531    0236888  99999999997  4445668888


Q ss_pred             EEEcCCCCcch--HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 012238          180 VLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV  257 (467)
Q Consensus       180 Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~  257 (467)
                      |++..+++...  ...++..|++++.+++  +.++.+|++.+++.++.. .+.+++.+++++||||..++.   ++|+++
T Consensus        81 vlv~~~~~~~~~~~~~a~~~g~~~~~v~~--~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~~i---~~I~~l  154 (363)
T TIGR02326        81 LLVVINGAYGARIVQIAEYLGIPHHVVDT--GEVEPPDVVEVEAILAAD-PAITHIALVHCETTTGILNPI---EAVAKL  154 (363)
T ss_pred             EEEEeCChhhHHHHHHHHHcCCceEEEeC--CCCCCCCHHHHHHHHhhC-CCccEEEEEeecCCccccCcH---HHHHHH
Confidence            88877666544  4667889999999998  345679999999998753 345577788899999999986   477888


Q ss_pred             HHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc-ccCCCccceEEEecCCHHHHhhhhhhh---
Q 012238          258 IQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARCCEVA---  333 (467)
Q Consensus       258 ~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~---  333 (467)
                      |+++|+++|+|+++ .+....  .   .+   .+. +..+++.|++|.+ +++|  +||++   .+++.++. +...   
T Consensus       155 ~~~~g~~livD~~~-~~g~~~--~---~~---~~~-~~D~~~~s~~K~l~~p~G--~G~l~---~~~~~~~~-~~~~~~~  218 (363)
T TIGR02326       155 AHRHGKVTIVDAMS-SFGGIP--I---DI---AEL-HIDYLISSANKCIQGVPG--FGFVI---ARQAELAA-CKGNARS  218 (363)
T ss_pred             HHHcCCEEEEEccc-cccCcc--c---ch---hhc-CccEEEecCccccccCCc--ceEEE---ECHHHHHH-hhcCCCc
Confidence            99999999999874 343211  1   11   111 2347788999976 5567  69996   55655554 0000   


Q ss_pred             -HHHHHHHHHhh---ccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccc
Q 012238          334 -VIQVKSQLKRL---ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  409 (467)
Q Consensus       334 -~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~  409 (467)
                       +.++..+....   .......++...+.++..++..  +..  +..+++..++++++++++.+.|+ ++|+    ....
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~--l~~--~g~~~~~~~~~~~~~~~l~~~L~-~~g~----~~~~  289 (363)
T TIGR02326       219 LSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLE--LEK--EGGVAARHQRYQQNQKTLVAGMR-ALGF----EPLL  289 (363)
T ss_pred             eeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHH--HHH--hhCHHHHHHHHHHHHHHHHHHHH-HcCC----eecc
Confidence             00000001101   0011113444455554444421  111  01255678899999999999998 8774    3332


Q ss_pred             C---CcceEE---ecC---CCHHHHHHHHHcccEEEeCCC-------eEEe-ccCChhhHHHHHHHHHHHHH
Q 012238          410 R---QIGMFS---FTG---LNKAQSDNMTNKWHVYMTKDG-------RISL-AGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       410 ~---~~g~f~---~~~---l~~~~~~~ll~~~gI~v~~gg-------Ris~-~~~~~~~i~~~~~~l~~~l~  464 (467)
                      +   ..+...   +..   ++...+.+.++++||.+.+|.       ||++ +..+.+++++++++|++++.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~  361 (363)
T TIGR02326       290 DDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAMY  361 (363)
T ss_pred             CcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            2   233222   222   233444444556699999882       9985 65588999999999999875

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.90  E-value=2.4e-21  Score=194.65  Aligned_cols=166  Identities=16%  Similarity=0.144  Sum_probs=131.5

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~  199 (467)
                      +..+..+|++++|++...        +++++  ++||++|+.++  +...+.+||+|+++.|.|..+...    ++..|+
T Consensus        62 ~~p~~~~Le~~iA~~~g~--------~~~l~--~~sG~~Ai~~a--l~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~  129 (400)
T PRK06234         62 GNPTSTEVENKLALLEGG--------EAAVV--AASGMGAISSS--LWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV  129 (400)
T ss_pred             CCccHHHHHHHHHHHhCC--------CcEEE--EcCHHHHHHHH--HHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe
Confidence            778899999999999653        24555  79999999887  555678999999999999765543    467899


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc--CCeeEEeccCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK--NHIPFFDVAYQGFASG  277 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~--~~~li~Deay~~~~~~  277 (467)
                      +++.++.       .|++++++.++   ++++++++++|+||||.+.+.+   +|+++|+++  |+++|+|++|......
T Consensus       130 ~v~~vd~-------~d~e~l~~~i~---~~tklI~iesP~NPtG~v~dl~---~I~~la~~~~~~i~livDea~~~~~~~  196 (400)
T PRK06234        130 EVTFVDT-------SNLEEVRNALK---ANTKVVYLETPANPTLKVTDIK---AISNIAHENNKECLVFVDNTFCTPYIQ  196 (400)
T ss_pred             EEEEECC-------CCHHHHHHHhc---cCCeEEEEECCCCCCCCcCCHH---HHHHHHHhcCCCCEEEEECCCCchhcC
Confidence            8888865       37899999887   5788999999999999998854   666678886  9999999998866543


Q ss_pred             CCCCChhHHHHHHhcCCeEEEEecCccCcccCCCcc-ceEEEecCCHHHHhh
Q 012238          278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAAR  328 (467)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~  328 (467)
                      .      ++    .. ...+++.|+||.++.+|+|+ ||++   .++++++.
T Consensus       197 ~------~l----~~-g~Divv~S~sK~l~g~g~~~gG~v~---~~~~~~~~  234 (400)
T PRK06234        197 R------PL----QL-GADVVVHSATKYLNGHGDVIAGFVV---GKEEFINQ  234 (400)
T ss_pred             C------ch----hh-CCcEEEeeccccccCCCCceeEEEE---ecHHHHHH
Confidence            1      11    11 34589999999999999987 8874   67777776

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.90  E-value=4.3e-21  Score=193.43  Aligned_cols=326  Identities=11%  Similarity=0.099  Sum_probs=207.4

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC-CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~-~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +.+.+|+..|..-..-|  +-.|.|.+++.+.++.... ..+....-..+|.+.++++.    +    .+.+++  +++|
T Consensus        39 G~~~lD~~~g~~~~~lG--h~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~----~~~~~~--~~SG  106 (396)
T PRK04073         39 GNRYMDMLSAYSAVNQG--HRHPKIIQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLT----G----KDMVLP--MNTG  106 (396)
T ss_pred             CCEEEEcCCCHHhccCC--CCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhcC----C----CCeEEE--cCCh
Confidence            45789998774411112  2367888888887754211 11112233345555566542    1    247888  8999


Q ss_pred             hhHHHHHHHHHHHh-------CCC-CEEEEcCCCCcchH-HHHhhCCCC------------eEEeeeecCCCCCCChhhH
Q 012238          161 TGSLRLAAALIERY-------FPG-AKVLISSPTWGNHK-NIFNDARVP------------WSEYRYYDPKTVGLDFEGM  219 (467)
Q Consensus       161 t~al~l~~~~l~~~-------~~g-d~Vlv~~P~y~~~~-~~~~~~G~~------------~~~v~~~~~~~~~~d~~~l  219 (467)
                      ++|++.+..+....       .+| ++|+...-+|.... ..+...+..            +..++.       .|++.+
T Consensus       107 seA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l  179 (396)
T PRK04073        107 AEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY-------GDLEAL  179 (396)
T ss_pred             HHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC-------CCHHHH
Confidence            99999985554332       134 67888887776543 333322211            111221       378888


Q ss_pred             HHHHHcCCCCcEEEEeCCCCCCCCCCCCHH-HHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238          220 IADIKAAPGGSFILLHGCAHNPTGIDPTPE-QWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (467)
Q Consensus       220 ~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~-~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (467)
                      ++.+.   ++++++++++++||||.+++.+ .+++|.++|++||+++|+||+|.++...+   ..+.. ......+++  
T Consensus       180 ~~~i~---~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g---~~~~~-~~~~~~pdi--  250 (396)
T PRK04073        180 KAAIT---PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTG---KLFAC-DWDNVTPDM--  250 (396)
T ss_pred             HHhcc---cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCc---HHHHh-hhcCCCCCE--
Confidence            88886   5678999999999999998764 69999999999999999999999876432   11111 111222333  


Q ss_pred             EecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                       .+|||.+|.+|+|+||++   +++++++.            +.........+.+.+++.++...|+..      ++  +
T Consensus       251 -~~~sK~lg~gg~~ig~~~---~~~~i~~~------------~~~~~~~~t~~~~~~~~aaa~aaL~~~------~~--~  306 (396)
T PRK04073        251 -YILGKALGGGVFPISCVA---ANRDILGV------------FTPGSHGSTFGGNPLACAVSIAALEVL------EE--E  306 (396)
T ss_pred             -EEecccccCCCCcceEEE---EcHHHHhh------------hcCCCCCCCCCCCHHHHHHHHHHHHHH------Hh--c
Confidence             357999998889999995   77877776            543333334456777777777766421      00  1


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC---CHHHHHHHHHcccEEEeCCC----eEEec-cCChh
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG----RISLA-GLSLA  450 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~~  450 (467)
                      ...++.+++++++.+.|+ +++.+. +....+. |.|+++.+   ..++.+++++ +||.+.+.+    ||+.. ..+++
T Consensus       307 ~l~~~~~~~~~~l~~~L~-~l~~~~-i~~~~~~-g~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~iRi~p~l~~t~e  382 (396)
T PRK04073        307 KLPERSLELGEYFKEQLK-EIDNPM-IKEVRGR-GLFIGVELNEPARPYCEALKE-EGLLCKETHETVIRFAPPLVITKE  382 (396)
T ss_pred             CHHHHHHHHHHHHHHHHH-hhcCCc-ccceecc-eEEEEEEecchHHHHHHHHHH-CCeEEecCCCCEEEEECCcccCHH
Confidence            344566677888899888 764321 3333445 45566544   2345666655 699998754    88842 23889


Q ss_pred             hHHHHHHHHHHHH
Q 012238          451 KCEYLADAIIDSY  463 (467)
Q Consensus       451 ~i~~~~~~l~~~l  463 (467)
                      ++++++++|++++
T Consensus       383 ~i~~~~~~l~~~l  395 (396)
T PRK04073        383 ELDWAFEKIKAVL  395 (396)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999875

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.90  E-value=1.6e-20  Score=190.01  Aligned_cols=327  Identities=15%  Similarity=0.093  Sum_probs=209.4

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC------CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN------KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~------~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      .+.++|+...|.   +... .|.|++++.+.++....      ..+....-..+|++.+++++..        +..++  
T Consensus        45 ~~~~~~~sn~yl---gl~~-~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~--------~~~~~--  110 (406)
T PRK13393         45 REVTVWCSNDYL---GMGQ-HPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK--------EAALL--  110 (406)
T ss_pred             ccEEEeeccccc---CCCC-CHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC--------CcEEE--
Confidence            468999988774   3333 67788888887753110      1111222457888899998642        24444  


Q ss_pred             cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC-CCCcEEEEe
Q 012238          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-PGGSFILLH  235 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~-~~~~~~i~i  235 (467)
                      .++|+++...+...+....+||.|+.....|......++..|.+++.++.       .|++.+++.++.. +++++++++
T Consensus       111 ~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~  183 (406)
T PRK13393        111 FTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRH-------NDPADLERKLSDLDPHRPKLVAF  183 (406)
T ss_pred             eCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCC-------CCHHHHHHHHHhccCCCCEEEEE
Confidence            46667777776332222237787777677777777777888887766653       4777888877643 235678899


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC-eEEEEecCccCcccCCCccc
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM-ELLVAQSYSKNLGLYAERIG  314 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~~~G~RiG  314 (467)
                      ++++||+|.+.+   +++|.++|+++|+++|+||+|....++... ... . ......+ .+++++||||.+|++|   |
T Consensus       184 ~~v~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G-~g~-~-~~~~~~~~~~i~~~tlsKa~g~~G---G  254 (406)
T PRK13393        184 ESVYSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRG-GGI-A-EREGLADRLTIIEGTLAKAFGVMG---G  254 (406)
T ss_pred             cCCCCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCCC-Cch-h-hhcCCCCCCeEEEEeCchhhcccC---c
Confidence            999999999988   556777799999999999998633333211 111 1 1111112 3677899999999888   8


Q ss_pred             eEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc--cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          315 AMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  392 (467)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~  392 (467)
                      |++   +++++++.            +......+  ..+.+...+.++..+|+..      ++. ...+++++++++++.
T Consensus       255 ~~~---~~~~~~~~------------l~~~~~~~~~t~~~~p~~~aa~~aaL~~~------~~~-~~~~~~~~~~~~~l~  312 (406)
T PRK13393        255 YIT---GSAALCDF------------IRSFASGFIFTTSLPPAVAAGALASVRHL------KAS-SAERERHQDRVARLR  312 (406)
T ss_pred             eee---CCHHHHHH------------HHHhCcCceecCccCHHHHHHHHHHHHHH------hhC-HHHHHHHHHHHHHHH
Confidence            884   78887776            55444332  2334444455555555321      111 123456778889999


Q ss_pred             HHhhhccCCCCCcccccCCcceEEe-cCC---CHHHHHHHHHcccEEEeC--------C-C--eEEecc-CChhhHHHHH
Q 012238          393 DSLSAKDKSGKDWSFILRQIGMFSF-TGL---NKAQSDNMTNKWHVYMTK--------D-G--RISLAG-LSLAKCEYLA  456 (467)
Q Consensus       393 ~~l~~~~g~~~~~~~~~~~~g~f~~-~~l---~~~~~~~ll~~~gI~v~~--------g-g--Ris~~~-~~~~~i~~~~  456 (467)
                      +.|+ ++|    ++...+.+.++.+ .+-   ..++.+++++++||.+.+        | +  ||++.. .+++++++++
T Consensus       313 ~~L~-~~g----~~~~~~~~~i~~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~  387 (406)
T PRK13393        313 ARLD-KAG----IPHLPNPSHIVPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLV  387 (406)
T ss_pred             HHHH-HcC----CCcCCCCCCeEEEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHH
Confidence            9998 776    4555666665432 221   123455666657999865        2 2  888753 3789999999


Q ss_pred             HHHHHHHHhc
Q 012238          457 DAIIDSYHNV  466 (467)
Q Consensus       457 ~~l~~~l~~~  466 (467)
                      ++|+++++++
T Consensus       388 ~~l~~~~~~~  397 (406)
T PRK13393        388 QALSEIWARL  397 (406)
T ss_pred             HHHHHHHHhc
Confidence            9999987653

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.90  E-value=3.3e-21  Score=195.76  Aligned_cols=342  Identities=8%  Similarity=0.022  Sum_probs=214.9

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +...+|+..|..-..-|  +-+|.+.+++.+.++... +.+.+..+.+.. ..+++++....+... .+++++  +.+|+
T Consensus        40 G~~~lD~~~g~~~~~lG--h~~~~i~~a~~~~~~~~~-~~~~~~~~~~~~-~~la~~l~~~~~~~~-~~~~~f--~~sGs  112 (425)
T PRK08088         40 GREYLDFAGGIAVLNTG--HLHPKVVAAVEAQLKKLS-HTCFQVLAYEPY-LELCEKMNQKVPGDF-AKKTLL--VTTGS  112 (425)
T ss_pred             CCEEEEcCCchhhcCCC--CCCHHHHHHHHHHHhhCC-CccccccCCHHH-HHHHHHHHHhCCCCC-CCEEEE--eCCcH
Confidence            45789998875411112  236788888888876432 222222223333 356666654333222 246777  78888


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeE--------------E--eeeecCCCCCCC----hhhHHH
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWS--------------E--YRYYDPKTVGLD----FEGMIA  221 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~--------------~--v~~~~~~~~~~d----~~~l~~  221 (467)
                      +|.+.+..+...+....+|+..+++|.+....+...+....              .  +|.+  .. +.+    ++.+++
T Consensus       113 ea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~-~~~~~~~~~~l~~  189 (425)
T PRK08088        113 EAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCP--LH-GVSEDDAIASIER  189 (425)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCcc--cc-CccHHHHHHHHHH
Confidence            98888866654554556788889999877655444333211              1  1111  11 122    456777


Q ss_pred             HHHc--C-CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238          222 DIKA--A-PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (467)
Q Consensus       222 ~l~~--~-~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (467)
                      .++.  . ..-..+++-+..+|+++..++.+.+++|.++|++||+++|+||+|.++...+   ..+..    +....+.-
T Consensus       190 ~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g---~~~~~----~~~~~~pd  262 (425)
T PRK08088        190 IFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTG---TLFAM----EQMGVAAD  262 (425)
T ss_pred             HHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---chhHH----hhcCCCCC
Confidence            7752  1 2334555656678888888999999999999999999999999999875432   11111    11122344


Q ss_pred             EecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                      +.||||.++ +|+|+||++   +++++++.            +.......+.+.+.+.|.++..+|+....    ++.++
T Consensus       263 i~s~sK~l~-~G~rig~v~---~~~~~~~~------------~~~~~~~~t~~~~~~~~~a~~~~l~~~~~----~~~~~  322 (425)
T PRK08088        263 LTTFAKSIA-GGFPLAGVT---GRAEVMDA------------IAPGGLGGTYAGNPIACAAALAVLKVFEQ----ENLLQ  322 (425)
T ss_pred             EEEEecccc-CCCcceeeE---ecHHHHhh------------cCCCCCCCCCCcCHHHHHHHHHHHHHHHh----cCHHH
Confidence            789999999 999999996   78888777            54444444556777888888888864322    23345


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-------------CHHHHHHHHHcccEEEeCCC-----
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-------------NKAQSDNMTNKWHVYMTKDG-----  440 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-------------~~~~~~~ll~~~gI~v~~gg-----  440 (467)
                      ..++..++.++.+.+.+. ..+.   +...... |+++|+.+             ..++.+.+++ .||.+.+++     
T Consensus       323 ~~~~~~~~~~~~l~~l~~-~~~~---~~~v~g~-G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~-~Gv~~~~~~~~~~~  396 (425)
T PRK08088        323 KANALGEKLKDGLLAIAE-KHPE---IGDVRGL-GAMIAIELFEDGDHSKPNAKLTAQIVARARD-KGLILLSCGPYYNV  396 (425)
T ss_pred             HHHHHHHHHHHHHHHHHH-hCCC---eEEEecc-ceEEEEEEecCCCCCCCCHHHHHHHHHHHHh-CCCEEecCCCCCCE
Confidence            555555555555554444 4432   2222223 77888754             1233445555 598887753     


Q ss_pred             -eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          441 -RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 -Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                       ||+++ ..+++++++++++|.+++..+
T Consensus       397 iRl~~~~~~t~~ei~~~i~~l~~~l~~~  424 (425)
T PRK08088        397 LRILVPLTIEDAQIRQGLEIIAQCFDEA  424 (425)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence             99998 457899999999999999865

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.5e-20  Score=187.34  Aligned_cols=331  Identities=17%  Similarity=0.146  Sum_probs=221.7

Q ss_pred             CCCCCCCchHHHHHHHHHHHhc---C-CCCcCCC----CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHH
Q 012238           95 TEELQPYVLDVVKKAENLMLER---G-ENKEYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRL  166 (467)
Q Consensus        95 d~~~~p~~~~~v~~a~~~~~~~---~-~~~~Y~~----~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l  166 (467)
                      |.......|..|.+++.+....   + ....|..    ..-+++.|+.+|++++...     .++|++  |.|+|+++++
T Consensus        27 D~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~-----~~eIvf--t~~tT~aln~   99 (405)
T COG0520          27 DNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADS-----SDEIVF--TRGTTEALNL   99 (405)
T ss_pred             cCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCC-----CCeEEE--eCChhHHHHH
Confidence            3334445688899998887631   1 1112221    2357889999999987651     378999  9999999999


Q ss_pred             HHHHHHH-hCCCCEEEEcCCCCc----chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          167 AAALIER-YFPGAKVLISSPTWG----NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       167 ~~~~l~~-~~~gd~Vlv~~P~y~----~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      ++..+.. +.+||+|++..-.|+    ++....+..|++++.+|++  +++.+|.+.++..+.   ++|+++.++..+|-
T Consensus       100 va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~--~~g~~~~~~~~~~i~---~~Tklvais~vSn~  174 (405)
T COG0520         100 VARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLD--DDGLLDLDALEKLIT---PKTKLVALSHVSNV  174 (405)
T ss_pred             HHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecC--CCCCcCHHHHHHhcC---CCceEEEEECcccc
Confidence            8554433 578999999998775    4556667789999999984  567899999999777   78999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCcc-CcccCCCccceEEEec
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK-NLGLYAERIGAMNVVC  320 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK-~~~~~G~RiG~~~~v~  320 (467)
                      ||++.+.+   +|+++|+++|.++++|.+ |.......+.         +..+-.+++.|-.| .+|+.|  +|.++   
T Consensus       175 tG~~~pv~---~I~~la~~~ga~v~VDaa-q~~~h~~idv---------~~l~~Df~afsgHKwl~gP~G--iGvLy---  236 (405)
T COG0520         175 TGTVNPVK---EIAELAHEHGALVLVDAA-QAAGHLPIDV---------QELGCDFLAFSGHKWLLGPTG--IGVLY---  236 (405)
T ss_pred             ccccchHH---HHHHHHHHcCCEEEEECc-cccCccCCCc---------hhcCCCEEEEcccccccCCCc--eEEEE---
Confidence            99988855   777779999999999999 5554433222         22245688999999 888667  58886   


Q ss_pred             CCHHHHhhhhhh----hHHHHHH-----HHHhhccCccCCCchHHHHHH-HHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012238          321 SSSDLAARCCEV----AVIQVKS-----QLKRLARPMYSNPPVHGARIV-ANVVGNPALFDEWKAEMEMMAGRIKNVRQK  390 (467)
Q Consensus       321 ~~~~~~~~~~~~----~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~-~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~  390 (467)
                      ..+++.+.-.+.    +.....+     .++..-...-.+.+.+.+.+. ..++   .+.+  +-.++++.++.++..++
T Consensus       237 ~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl---~~~~--~ig~~~i~~~e~~L~~~  311 (405)
T COG0520         237 VRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAAL---DYLL--EIGMEAIEAHERELTEY  311 (405)
T ss_pred             EchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHH---HHHH--HHhHHHHHHHHHHHHHH
Confidence            566666550000    0000000     000000001122333333332 2222   1111  12256788888888999


Q ss_pred             HHHHhhhccCCCCCcccccC----CcceEEec--CCCHHHHHHHHHcccEEEeCCC----------------eEEeccC-
Q 012238          391 LFDSLSAKDKSGKDWSFILR----QIGMFSFT--GLNKAQSDNMTNKWHVYMTKDG----------------RISLAGL-  447 (467)
Q Consensus       391 l~~~l~~~~g~~~~~~~~~~----~~g~f~~~--~l~~~~~~~ll~~~gI~v~~gg----------------Ris~~~~-  447 (467)
                      +.+.|+ ++..   ++++.+    .++.+.|.  +.....+...|.++||.++.|.                |+|++.+ 
T Consensus       312 ~~~~L~-~~~~---v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YN  387 (405)
T COG0520         312 LLEGLS-ELPG---VEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYN  387 (405)
T ss_pred             HHHHHh-cCCC---eEEecCCcccCceEEEEEeCCCCHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecC
Confidence            999998 6542   455544    35655543  6667776666777799998881                9998766 


Q ss_pred             ChhhHHHHHHHHHHHHH
Q 012238          448 SLAKCEYLADAIIDSYH  464 (467)
Q Consensus       448 ~~~~i~~~~~~l~~~l~  464 (467)
                      +++|+++++++|+++.+
T Consensus       388 t~edid~l~~aL~~~~~  404 (405)
T COG0520         388 TEEDVDRLLEALKKALA  404 (405)
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            66999999999998764

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.90  E-value=7.8e-21  Score=188.81  Aligned_cols=310  Identities=15%  Similarity=0.090  Sum_probs=196.1

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (467)
                      .+||-+--.  +.-+..++++.+.+++.+..+.     |.   +.+++++++.+++...+|    .+++++  |+|+|.|
T Consensus         9 ~~ina~g~~--t~~g~s~~~~~v~~a~~~~~~~-----~~---~~~~~~~~~~~~~a~~~g----~~~~~~--~~g~t~a   72 (363)
T TIGR01437         9 KVINASGKM--TILGVSTVSDEVADAQKRGAQN-----YF---EIKELVNKTGEYIANLLG----VEDAVI--VSSASAG   72 (363)
T ss_pred             eEEECCcEe--ecCCCCCCCHHHHHHHHHHHhc-----CC---CHHHHHHHHHHHHHHhhC----CCeEEE--EcCHHHH
Confidence            456654222  2334445689999999988642     32   234455555555433333    246777  9999999


Q ss_pred             HHHHHHHHHHhCCCC---------------EEEEcCCCCcch----HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHH
Q 012238          164 LRLAAALIERYFPGA---------------KVLISSPTWGNH----KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK  224 (467)
Q Consensus       164 l~l~~~~l~~~~~gd---------------~Vlv~~P~y~~~----~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~  224 (467)
                      +.++  +...+.+||               +|+++.|.|..|    ...+...|+++++++.    ++.+|++.++++++
T Consensus        73 l~~a--l~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~----~~~~d~~~le~ai~  146 (363)
T TIGR01437        73 IAQS--VAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGY----ANECSAEQLEAAIT  146 (363)
T ss_pred             HHHH--HHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcC----CCCCCHHHHHHhcC
Confidence            9998  555677887               999999888766    5677889999999876    24599999999997


Q ss_pred             cCCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCc
Q 012238          225 AAPGGSFILL-HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (467)
Q Consensus       225 ~~~~~~~~i~-i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S  303 (467)
                         +++++++ +++|+||+|.+.+.+   +|+++|++||+++|+|++|..   .     ..   .....+ ..+++.|++
T Consensus       147 ---~~t~ai~~v~~~~~~~g~~~~~~---~i~~~a~~~gi~vivD~a~~~---~-----~~---~~~~~g-~D~~~~S~~  208 (363)
T TIGR01437       147 ---EKTAAILYIKSHHCVQKSMLSVE---DAAQVAQEHNLPLIVDAAAEE---D-----LQ---KYYRLG-ADLVIYSGA  208 (363)
T ss_pred             ---hhceEEEEEecCCCCcCCcCCHH---HHHHHHHHcCCeEEEECCCCC---c-----hH---HHHHcC-CCEEEEeCC
Confidence               4555444 678999999998876   567779999999999999751   1     11   111222 357789999


Q ss_pred             cCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCcc----C-CCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          304 KNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMY----S-NPPVHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       304 K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                      |.+  +|++.|+++   .++++++.            ++.......    . ..+..+..++...+.         +.-.
T Consensus       209 K~l--~gp~~G~l~---~~~~~i~~------------~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~---------~~~~  262 (363)
T TIGR01437       209 KAI--EGPTSGLVL---GKKKYIEW------------VKLQSKGIGRAMKVGKENILGLTAALEQYL---------STGK  262 (363)
T ss_pred             ccc--CCCceEEEE---EcHHHHHH------------HHhccCCCcceeccCHHHHHHHHHHHHHHH---------ccCc
Confidence            976  688899985   67767665            322111100    0 011122222222221         1112


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccC--Ccce--E---E-ec----CCCHHHHHHHHHccc--EEEeC----CC
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR--QIGM--F---S-FT----GLNKAQSDNMTNKWH--VYMTK----DG  440 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~--~~g~--f---~-~~----~l~~~~~~~ll~~~g--I~v~~----gg  440 (467)
                      +..+.+.++++.+.+.|. +++  + +....+  ..+.  +   + |-    +++.+.+.+.|++++  |.+++    .|
T Consensus       263 ~~~~~~~~~~~~l~~~L~-~i~--g-~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~~~~~~  338 (363)
T TIGR01437       263 ESGAEMVAKLTPFIEALN-TLK--G-VSASIVQDEAGRDIARAEIRFDESELGMTAADVVQALRQGEPAIYTRGYKANEG  338 (363)
T ss_pred             ccHHHHHHHHHHHHHHHh-cCC--C-eEEEEecCCCCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeeeeecCC
Confidence            233344455667888887 652  1 444321  1111  1   1 11    456666665665555  88774    24


Q ss_pred             --eEEeccCChhhHHHHHHHHHHHH
Q 012238          441 --RISLAGLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       441 --Ris~~~~~~~~i~~~~~~l~~~l  463 (467)
                        ||++...+++|++.++++|++++
T Consensus       339 ~~~l~~~~~~~~e~~~~~~~l~~~~  363 (363)
T TIGR01437       339 IIEIDPRSVTGGQLDIIVERIREIV  363 (363)
T ss_pred             eEEEEeecCCHHHHHHHHHHHHHhC
Confidence              78877778999999999998763

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.89  E-value=4.1e-21  Score=195.10  Aligned_cols=323  Identities=17%  Similarity=0.192  Sum_probs=199.1

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC-----CcCC-CCcchHHH----HHHHHHHHhCCCCcccccCce
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-----KEYL-PIEGLAAF----NKVTAELLFGADNSVLKEQRV  152 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~-----~~Y~-~~~G~~~l----r~aia~~l~~~~~~~~~~~~i  152 (467)
                      .+.|+|..++.      + +++.|++++...+.....     ..|. ...-...+    |+.++++++..      ..+|
T Consensus        25 ~~~~~l~~~~n------~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~------~~~i   91 (416)
T PRK00011         25 EEHIELIASEN------F-VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAE------YANV   91 (416)
T ss_pred             hcCeeeecccC------c-CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC------ceee
Confidence            47899998764      3 378888888665422111     1110 11112233    33566665432      3445


Q ss_pred             eeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-----HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC
Q 012238          153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN-----IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP  227 (467)
Q Consensus       153 ~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~-----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~  227 (467)
                      ++   .+|+.++.++  +...+.|||+|+++.|+|..+..     .+...|++++.++.+ .+++.+|++.+++.+++  
T Consensus        92 ~~---~sgt~al~~~--l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~~--  163 (416)
T PRK00011         92 QP---HSGSQANAAV--YFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVD-EETGLIDYDEVEKLALE--  163 (416)
T ss_pred             ec---CCchHHHHHH--HHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcC-cccCCcCHHHHHHHHHh--
Confidence            44   4568888886  44456799999999999976432     123456778888774 23578999999999974  


Q ss_pred             CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc
Q 012238          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (467)
Q Consensus       228 ~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (467)
                      .+++++++++++||  ...+   +++|+++|+++|+++|+|++|. ++.+.+.  ....    ..  ...+++.|+||.+
T Consensus       164 ~~~k~v~~~~~~~~--~~~~---~~~I~~la~~~~~~livD~a~~~g~~~~g~--~~~~----~~--~~di~~~S~~K~l  230 (416)
T PRK00011        164 HKPKLIIAGASAYS--RPID---FKRFREIADEVGAYLMVDMAHIAGLVAAGV--HPSP----VP--HADVVTTTTHKTL  230 (416)
T ss_pred             cCCCEEEECCCcCC--CccC---HHHHHHHHHHcCCEEEEECcchhcccccCc--cCCC----CC--CCcEEEecCCcCC
Confidence            35667777666654  3333   6688888999999999999964 2222110  0001    11  2347799999976


Q ss_pred             ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchH-HHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238          307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH-GARIVANVVGNPALFDEWKAEMEMMAGRIK  385 (467)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~  385 (467)
                        +|.|.||++  +.++++++.            ++........+.+.. ...++..++.  ..   ..+.+++..++++
T Consensus       231 --~g~~gg~i~--~~~~~~~~~------------l~~~~~~~~~~~~~~~~~aa~~~a~~--~~---~~~~~~~~~~~~~  289 (416)
T PRK00011        231 --RGPRGGLIL--TNDEELAKK------------INSAVFPGIQGGPLMHVIAAKAVAFK--EA---LEPEFKEYAQQVV  289 (416)
T ss_pred             --CCCCceEEE--eCCHHHHHH------------HHHHhCccccCCccHHHHHHHHHHHH--HH---HhhhHHHHHHHHH
Confidence              789999996  445677776            544433322222222 2222111111  11   1223567888999


Q ss_pred             HHHHHHHHHhhhccCCCCCccccc-CCcceEEecCC-----CHHHHHHHHHcccEEEeCC-------------C-eEEe-
Q 012238          386 NVRQKLFDSLSAKDKSGKDWSFIL-RQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD-------------G-RISL-  444 (467)
Q Consensus       386 ~~r~~l~~~l~~~~g~~~~~~~~~-~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g-------------g-Ris~-  444 (467)
                      ++++++.+.|+ ++|    +++.. ...++++|+.+     +.+.+.+.|+++||.+..+             + |++. 
T Consensus       290 ~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~  364 (416)
T PRK00011        290 KNAKALAEALA-ERG----FRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTP  364 (416)
T ss_pred             HHHHHHHHHHH-hCC----CeeeecCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCH
Confidence            99999999999 776    34432 11235666644     3455666666779998731             2 7743 


Q ss_pred             ----ccCChhhHHHHHHHHHHHHHh
Q 012238          445 ----AGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       445 ----~~~~~~~i~~~~~~l~~~l~~  465 (467)
                          .+++++++++++++|++++++
T Consensus       365 ~~~~~~~t~~di~~l~~~l~~~~~~  389 (416)
T PRK00011        365 AITTRGFKEAEMKEIAELIADVLDN  389 (416)
T ss_pred             HHhhcCcCHHHHHHHHHHHHHHHhc
Confidence                134689999999999998764

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.89  E-value=8.5e-21  Score=189.93  Aligned_cols=318  Identities=12%  Similarity=0.080  Sum_probs=201.9

Q ss_pred             chHHHHHHHHHHHhcC--CCCcCCCC--cchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh--C
Q 012238          102 VLDVVKKAENLMLERG--ENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--F  175 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~--~~~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~--~  175 (467)
                      +.|.+.+++.+.+...  ....| +.  .-..++++.++++++..      +.++++  ++||++++..+...+...  .
T Consensus        32 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~g~~------~~~~~~--~~ggt~a~~~a~~~~~~~~~~  102 (371)
T PRK13520         32 PHPIARKAHEMFLETNLGDPGLF-PGTAKLEEEAVEMLGELLHLP------DAYGYI--TSGGTEANIQAVRAARNLAKA  102 (371)
T ss_pred             chHHHHHHHHHHHhcCCCCcccC-ccHHHHHHHHHHHHHHHhCCC------CCCeEE--ecCcHHHHHHHHHHHHhhccC
Confidence            3677788887777432  11112 21  11256778888875432      446777  899999998873332222  2


Q ss_pred             CCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012238          176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (467)
Q Consensus       176 ~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~  255 (467)
                      +||+|++..+.|..+...++..|++++.+|.  ++++.+|++.+++.++   +++..+++++++||||.+.+.+   +|.
T Consensus       103 ~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~---~~~~~vi~~~~~~~tG~~~~l~---~I~  174 (371)
T PRK13520        103 EKPNIVVPESAHFSFDKAADMLGVELRRAPL--DDDYRVDVKAVEDLID---DNTIGIVGIAGTTELGQVDPIP---ELS  174 (371)
T ss_pred             CCceEEecCcchHHHHHHHHHcCceEEEecC--CCCCcCCHHHHHHHHh---hCCEEEEEEcCCcCCcccCCHH---HHH
Confidence            5789999999999999999999999999987  3456799999999997   4565666677899999998855   667


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHH
Q 012238          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVI  335 (467)
Q Consensus       256 ~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~  335 (467)
                      ++|+++|+++++|++|..+...-. .....+ .+ ....-..+..|.+| ++++|.++|+++  ..++++++.       
T Consensus       175 ~l~~~~g~~livD~a~~~~~~~~~-~~~~~~-~~-~~~~vd~~~~s~~K-~~~a~~~~G~~~--~~~~~~~~~-------  241 (371)
T PRK13520        175 KIALENGIFLHVDAAFGGFVIPFL-DDPPNF-DF-SLPGVDSITIDPHK-MGLAPIPAGGIL--FRDESYLDA-------  241 (371)
T ss_pred             HHHHHcCCCEEEEecchhHHHHhh-cCCCCc-cc-cCCCCceEEECCcc-ccCccCCceEEE--EcCHHHHHh-------
Confidence            779999999999999876542100 000000 00 01112244557778 556788999886  466666655       


Q ss_pred             HHHHHHHhhccCcc--------CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcc-
Q 012238          336 QVKSQLKRLARPMY--------SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS-  406 (467)
Q Consensus       336 ~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~-  406 (467)
                           +........        ...+.....++..+|..-     ..+.+++..++..++++++.+.|+ ++|    ++ 
T Consensus       242 -----l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l-----~~~g~~~~~~~~~~~~~~l~~~L~-~~g----~~~  306 (371)
T PRK13520        242 -----LAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYL-----GREGYRKVVERCMENTRWLAEELK-ERG----FEP  306 (371)
T ss_pred             -----hcccCccccCCCCcceEeeccChHHHHHHHHHhhh-----cHhHHHHHHHHHHHHHHHHHHHHH-hCC----CEE
Confidence                 321110000        011112222333333211     022356777888889999999998 776    34 


Q ss_pred             cccCCcceEEecCC-CHHHHHHHHHcccEEEeCCC-----eEEeccC-ChhhHHHHHHHHHHHHHh
Q 012238          407 FILRQIGMFSFTGL-NKAQSDNMTNKWHVYMTKDG-----RISLAGL-SLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       407 ~~~~~~g~f~~~~l-~~~~~~~ll~~~gI~v~~gg-----Ris~~~~-~~~~i~~~~~~l~~~l~~  465 (467)
                      +..+..+++.+ .+ +.+.+.+.|.++||.+..++     |||+... +++++++++++|++++++
T Consensus       307 ~~~~~~~~v~~-~~~~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~  371 (371)
T PRK13520        307 VIEPVLNIVAF-DDPNPDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVKKR  371 (371)
T ss_pred             ecCCCceEEEE-ecCCHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhhC
Confidence            44555554433 32 34444434444599987753     9987532 779999999999988753

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.89  E-value=1.6e-20  Score=187.97  Aligned_cols=328  Identities=12%  Similarity=0.077  Sum_probs=215.2

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~gg  160 (467)
                      +...|||..|..  .....+ .|.+.+++.+.+....  .+ +..-..++++.+++.+...      ++ .+++  +++|
T Consensus        28 g~~~lD~~s~~~--~~~lG~-~p~v~~a~~~~~~~~~--~~-~~~~~~~~~~~la~~l~~~------~~~~~~~--~~SG   93 (375)
T PRK04260         28 GKKYLDFSSGIG--VTNLGF-HPQVQQALQKQAGLIW--HS-PNLYLNSLQEEVAQKLIGD------KDYLAFF--CNSG   93 (375)
T ss_pred             CCEEEECCCCcc--cccCCC-CHHHHHHHHHHHHhcC--cc-cCccCCHHHHHHHHHHhcC------cCCEEEE--cCcc
Confidence            347899987742  113344 5678888888775421  12 2223457888999887543      23 3566  8999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchH-HHHhhCCCC---------eEEeeeecCCCCCCChhhHHHHHHcCCCCc
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHK-NIFNDARVP---------WSEYRYYDPKTVGLDFEGMIADIKAAPGGS  230 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~-~~~~~~G~~---------~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  230 (467)
                      +++...+.++.....++++|++.+.+|.... ..+...|.+         +..++..    .-.|++.+++.+.   ++.
T Consensus        94 seA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~dl~~l~~~l~---~~~  166 (375)
T PRK04260         94 AEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYA----IFNDLNSVKALVN---KNT  166 (375)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEe----CCCCHHHHHHhcC---CCe
Confidence            9999988555444456688999999887532 233222221         1111111    0148888888775   466


Q ss_pred             EEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC
Q 012238          231 FILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (467)
Q Consensus       231 ~~i~i~~p~NPTG~~~~-~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (467)
                      .++++.+++|++|...+ .+.++++.++|+++|+++|+||+|.++...+   ..+.. ......++   +.||||.++ +
T Consensus       167 a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g---~~~~~-~~~~~~pd---i~t~sK~l~-~  238 (375)
T PRK04260        167 AAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTG---KLYAF-EHYGIEPD---IFTLAKGLA-N  238 (375)
T ss_pred             EEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---chhhh-HhhCCCCC---EEEeccccc-C
Confidence            78889999999999754 5779999999999999999999998875432   12111 11122234   338999998 8


Q ss_pred             CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012238          310 AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ  389 (467)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~  389 (467)
                      |+|+||++   .++++.+.            +.......+.+.+.+.+.++..+|+....    .+.+++.++..+..++
T Consensus       239 G~~ig~~~---~~~~~~~~------------~~~~~~~~t~~~~~~~~~aa~a~l~~~~~----~~~~~~~~~~~~~~~~  299 (375)
T PRK04260        239 GVPVGAML---AKSSLGGA------------FGYGSHGSTFGGNKLSMAAASATLDIMLT----AGFLEQALENGNYLQE  299 (375)
T ss_pred             CcceEEEE---EcHHHHhh------------cCCCCCCCCCCcCHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHH
Confidence            99999996   67777666            43322233445667778888777754321    2335666777777777


Q ss_pred             HHHHHhhhccCCCCCcccccCCcceEEecCC--CHH-HHHHHHHcccEEEeCCC----eEEe-ccCChhhHHHHHHHHHH
Q 012238          390 KLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--NKA-QSDNMTNKWHVYMTKDG----RISL-AGLSLAKCEYLADAIID  461 (467)
Q Consensus       390 ~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~~~-~~~~ll~~~gI~v~~gg----Ris~-~~~~~~~i~~~~~~l~~  461 (467)
                      .+.+.+. +.+.   +.... ..|+++|+.+  +.+ +.+++. ++||.+.+.+    ||++ ..++++++++++++|++
T Consensus       300 ~l~~~~~-~~~~---~~~~~-~~g~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~~~lR~~~~~~~t~~~i~~~l~~l~~  373 (375)
T PRK04260        300 QLQKALQ-DKET---VTTVR-GLGYMIGIETTADLSQLVEAAR-DKGLIVLTAGTNVIRLLPPLTLTKEEIEQGIAILSE  373 (375)
T ss_pred             HHHHHHh-hCCC---eeEEe-ccceEEEEEecCcHHHHHHHHH-hCCCEEecCCCCEEEEcCCCccCHHHHHHHHHHHHH
Confidence            7777776 5532   22222 3688888864  333 444544 5699998875    8887 56688999999999987


Q ss_pred             HH
Q 012238          462 SY  463 (467)
Q Consensus       462 ~l  463 (467)
                      ++
T Consensus       374 ~~  375 (375)
T PRK04260        374 VF  375 (375)
T ss_pred             hC
Confidence            63

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.89  E-value=1.5e-20  Score=188.55  Aligned_cols=320  Identities=17%  Similarity=0.115  Sum_probs=197.5

Q ss_pred             chHHHHHHHHHHHhcCC-CC---cCCC----CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH
Q 012238          102 VLDVVKKAENLMLERGE-NK---EYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER  173 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~~-~~---~Y~~----~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~  173 (467)
                      +|+.+.+++.+.+.... ..   .|..    ..+..++|+.++++++...     +++|++  |.|+++++.++  +...
T Consensus        12 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----~~~v~~--~~g~t~al~~~--~~~~   82 (376)
T TIGR01977        12 KPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPS-----SAHVVF--TNNATTALNIA--LKGL   82 (376)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCC-----CCeEEE--eCCHHHHHHHH--HHhc
Confidence            36788888888775421 11   2322    2567899999999975431     457888  99999999987  4445


Q ss_pred             hCCCCEEEEcCCCCcchHH----HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHH
Q 012238          174 YFPGAKVLISSPTWGNHKN----IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPE  249 (467)
Q Consensus       174 ~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~  249 (467)
                      +.+||+|+++.++|..+..    .++..|++++.++.+  .++.+|++.+++.++   ++++++++++|+||||.+++.+
T Consensus        83 ~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~---~~~~~v~~~~~~n~tG~~~~~~  157 (376)
T TIGR01977        83 LKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCD--NEGLISPERIKRAIK---TNTKLIVVSHASNVTGTILPIE  157 (376)
T ss_pred             cCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecC--CCCCcCHHHHHHhcC---CCCeEEEEECCCCCccccCCHH
Confidence            6799999999999877543    445669999999874  356789999999986   5678899999999999999966


Q ss_pred             HHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC-CCccceEEEecCCHHHHhh
Q 012238          250 QWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY-AERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       250 ~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RiG~~~~v~~~~~~~~~  328 (467)
                         +|.++|+++|+++|+|+++.... ...  +.       ....-.+++.|.+|.++.| |  +|.++  ..+...+..
T Consensus       158 ---~i~~l~~~~~~~livD~a~~~g~-~~~--~~-------~~~~~D~~~~s~~K~l~~p~g--~g~l~--~~~~~~~~~  220 (376)
T TIGR01977       158 ---EIGELAQENGIFFILDAAQTAGV-IPI--DM-------TELAIDMLAFTGHKGLLGPQG--TGGLY--IREGIKLKP  220 (376)
T ss_pred             ---HHHHHHHHcCCEEEEEhhhccCc-cCC--Cc-------hhcCCCEEEecccccccCCCC--ceEEE--EcCCcCcCc
Confidence               56777999999999999964322 111  11       1112357788899987543 4  46664  244322221


Q ss_pred             hhhhhHH---HHHHHHHhh-ccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 012238          329 CCEVAVI---QVKSQLKRL-ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD  404 (467)
Q Consensus       329 ~~~~~~~---~~~~~l~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~  404 (467)
                      -...+..   ......+.. .+.....++.....++..+|+   +  ..+...+.++++.++..+.+.+.|. +.+.   
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~---~--~~~~g~~~~~~~~~~l~~~~~~~l~-~~~~---  291 (376)
T TIGR01977       221 LKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIK---F--IEKIGIANIAKKECMLTEKLLNGLR-EINK---  291 (376)
T ss_pred             eecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHH---H--HHHhCHHHHHHHHHHHHHHHHHHHh-cCCC---
Confidence            0000000   000000000 000112233333223332331   1  0112346777888888888999887 5431   


Q ss_pred             cccccC-----CcceEEe--cCCCHHHHHHHH-HcccEEEeCC----------------C--eEEeccC-ChhhHHHHHH
Q 012238          405 WSFILR-----QIGMFSF--TGLNKAQSDNMT-NKWHVYMTKD----------------G--RISLAGL-SLAKCEYLAD  457 (467)
Q Consensus       405 ~~~~~~-----~~g~f~~--~~l~~~~~~~ll-~~~gI~v~~g----------------g--Ris~~~~-~~~~i~~~~~  457 (467)
                      ++...+     ..+...+  .+.+.+.+...+ +++||.+..|                +  ||++... ++++++++++
T Consensus       292 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~  371 (376)
T TIGR01977       292 VKIYGPADPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLE  371 (376)
T ss_pred             eEEeCCCCccccCCeEEEEECCCCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHH
Confidence            344332     2232221  245655555444 4459988653                2  9997654 6799999999


Q ss_pred             HHHH
Q 012238          458 AIID  461 (467)
Q Consensus       458 ~l~~  461 (467)
                      +|++
T Consensus       372 ~l~~  375 (376)
T TIGR01977       372 ALSE  375 (376)
T ss_pred             HHhh
Confidence            9975

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.89  E-value=2.6e-21  Score=195.45  Aligned_cols=322  Identities=15%  Similarity=0.105  Sum_probs=203.0

Q ss_pred             cCCCCCCCCchHHHHHHHHHHHhcCCCCc--------CCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHH
Q 012238           93 YRTEELQPYVLDVVKKAENLMLERGENKE--------YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (467)
Q Consensus        93 ~~d~~~~p~~~~~v~~a~~~~~~~~~~~~--------Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al  164 (467)
                      |+|.++..++++.+++++...+.......        +.......++|+.+++++...      +++|++  ++|+|+++
T Consensus         6 yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~------~~~v~~--~~g~t~a~   77 (402)
T TIGR02006         6 YLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGAD------SREIVF--TSGATESN   77 (402)
T ss_pred             EeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCC------CCeEEE--eCCHHHHH
Confidence            34444555568889999877763211010        111234677889999986533      678988  99999999


Q ss_pred             HHHHHHHHH--hCCCCEEEEcCCCCcchHHHH---hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          165 RLAAALIER--YFPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       165 ~l~~~~l~~--~~~gd~Vlv~~P~y~~~~~~~---~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      ++++..+..  ..+||+|+++.+.|..+...+   +..|++++.++++  .++.+|++.+++.++   ++++++++++++
T Consensus        78 ~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~---~~~~lv~v~~~~  152 (402)
T TIGR02006        78 NLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPK--SNGLIDLEELKAAIR---DDTILVSIMHVN  152 (402)
T ss_pred             HHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccC--CCCcCCHHHHHHhcC---CCCEEEEEECCC
Confidence            987433321  258999999999998765443   4569999999873  456799999999886   567899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||...+.+   +|.++|+++|+++++|+++. +.....  +.       ....-.+++.|..|.+|++|  +|+++  
T Consensus       153 n~tG~~~~~~---~I~~l~~~~g~~livD~a~a-~g~~~~--~~-------~~~~~D~~~~s~~K~~gp~G--~G~l~--  215 (402)
T TIGR02006       153 NEIGVIQDIA---AIGEICRERKVFFHVDAAQS-VGKIPI--NV-------NELKVDLMSISGHKIYGPKG--IGALY--  215 (402)
T ss_pred             cCceecccHH---HHHHHHHHcCCEEEEEcchh-cCCccc--Cc-------cccCCCEEEEehhhhcCCCc--eEEEE--
Confidence            9999998755   77777999999999999954 322111  11       11123477888889988667  68875  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHh---hccCcc-CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKR---LARPMY-SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL  395 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~-~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l  395 (467)
                      ..++.. ..        +.. +..   ..+... ..++.....++..+|+.      .++.++...+++++.++++.+.|
T Consensus       216 ~~~~~~-~~--------~~~-~~~g~~~~~~~~~gt~~~~~~~al~~al~~------~~~~~~~~~~~~~~l~~~l~~~l  279 (402)
T TIGR02006       216 VRRKPR-VR--------LEA-LIHGGGHERGMRSGTLPTHQIVGMGEAFRI------AKEEMAQDTAHVLALRDRLLNGI  279 (402)
T ss_pred             EccCCC-CC--------CCc-eecCCCccCCccCCCccHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHH
Confidence            233222 11        000 000   000111 12333333333333321      12236677788899999999998


Q ss_pred             hhccCCCCCcccc------cCCcceEEecCCCHHHHHHHHHcccEEEeCC-------------------------C--eE
Q 012238          396 SAKDKSGKDWSFI------LRQIGMFSFTGLNKAQSDNMTNKWHVYMTKD-------------------------G--RI  442 (467)
Q Consensus       396 ~~~~g~~~~~~~~------~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ri  442 (467)
                      + .+..   +...      .|....+.|.+.+.+.+...+  .+|.+..|                         |  |+
T Consensus       280 ~-~~~~---v~~~~~~~~~~p~~~~v~f~~~~~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~  353 (402)
T TIGR02006       280 K-SIEE---VYLNGDLEHRVPGNLNVSFNYVEGESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRF  353 (402)
T ss_pred             h-cCCC---EEEeCCccccCCCeEEEEEeCcCHHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEE
Confidence            8 6431   2222      111123445555544443333  25654433                         2  99


Q ss_pred             EeccC-ChhhHHHHHHHHHHHHHhc
Q 012238          443 SLAGL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       443 s~~~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                      |++.. +++|+++++++|+++++.+
T Consensus       354 S~~~~~t~edid~l~~~l~~~~~~~  378 (402)
T TIGR02006       354 TIGRFTTEEEIDYAVKLVKSAIDKL  378 (402)
T ss_pred             EecCCCCHHHHHHHHHHHHHHHHHH
Confidence            98765 6699999999999988654

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.89  E-value=3.1e-21  Score=191.19  Aligned_cols=299  Identities=12%  Similarity=0.018  Sum_probs=201.4

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-h-------
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-Y-------  174 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~-------  174 (467)
                      +..+.+.+....+... ..|....+..++++++++++....|....+.++++  |.|||+++.++...+.. .       
T Consensus        12 ~~~~~~~~~~~~n~~~-~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~--t~ggt~a~~~al~~~~~~~~~~~~~~   88 (345)
T cd06450          12 PALLLEMLTSAKNAID-FTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVF--TSGGSESNLLALLAARDRARKRLKAG   88 (345)
T ss_pred             HHHHHHHHHHhcCCCC-cccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEE--eCChhHHHHHHHHHHHHHhhhhhhcc
Confidence            5566666666665543 44888889999999999988665555433557888  99999999987443321 1       


Q ss_pred             --CC--CCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc---CCCCcEEEEeCCCCCCCCCCCC
Q 012238          175 --FP--GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFILLHGCAHNPTGIDPT  247 (467)
Q Consensus       175 --~~--gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~~~~i~i~~p~NPTG~~~~  247 (467)
                        .+  ++.|+++.++|..+...++..|.+++.+++++  ++.+|++.+++.+++   ...+++++++++++||||.+.+
T Consensus        89 ~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~  166 (345)
T cd06450          89 GGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDE--DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP  166 (345)
T ss_pred             cccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCC--CCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC
Confidence              12  34788899999999888888899999999842  358999999999974   1126678888999999999755


Q ss_pred             HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHh
Q 012238          248 PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAA  327 (467)
Q Consensus       248 ~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~  327 (467)
                         +++|+++|+++|+++++|++|..+....   +.... .......-..+..|++|.++ ++.++|++.   .      
T Consensus       167 ---~~~i~~~~~~~~~~l~vD~a~~~~~~~~---~~~~~-~~~~~~~~d~~~~s~~K~l~-~p~g~g~~~---~------  229 (345)
T cd06450         167 ---LEEIADLAEKYDLWLHVDAAYGGFLLPF---PEPRH-LDFGIERVDSISVDPHKYGL-VPLGCSAVL---V------  229 (345)
T ss_pred             ---HHHHHHHHHHhCCeEEEechhhHHHhhC---hhhHH-HhcCccccCEEEEchhHhhC-CCcchHHHH---H------
Confidence               5678888999999999999988766421   11000 01111122456779999775 567788873   1      


Q ss_pred             hhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccc
Q 012238          328 RCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF  407 (467)
Q Consensus       328 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~  407 (467)
                                    +           .+.+.++...+..        ..++++.++..+.++++.+.|+ +++.   +..
T Consensus       230 --------------~-----------~~~~~~~l~~l~~--------~g~~~~~~~~~~~~~~l~~~L~-~~~~---~~~  272 (345)
T cd06450         230 --------------R-----------ALKLWATLRRFGR--------DGYGEHIDRIVDLAKYLAELIR-ADPG---FEL  272 (345)
T ss_pred             --------------H-----------HHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHh-cCCC---eEE
Confidence                          1           2223333333322        2355677788888899999988 6631   443


Q ss_pred             c-cCCcceEEec--C-----CCH-HHHHHHHHcccEEEeCC------C--eEEeccC--ChhhHHHHHHHHHH
Q 012238          408 I-LRQIGMFSFT--G-----LNK-AQSDNMTNKWHVYMTKD------G--RISLAGL--SLAKCEYLADAIID  461 (467)
Q Consensus       408 ~-~~~~g~f~~~--~-----l~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~--~~~~i~~~~~~l~~  461 (467)
                      . .++.+++.|.  +     .+. ++.++|. ++|+.+.++      +  ||++...  +++++++++++|++
T Consensus       273 ~~~~~~~iv~f~~~~~~~~~~~~~~i~~~L~-~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         273 LGEPNLSLVCFRLKPSVKLDELNYDLSDRLN-ERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             ecCCceeEEEEEECCcchhhHHHHHHHHHHH-hcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            3 3566766554  2     122 3344554 455443332      2  9999753  77999999999876

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.89  E-value=1.3e-20  Score=190.39  Aligned_cols=336  Identities=14%  Similarity=0.056  Sum_probs=210.6

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +...||+..|..-+.-|.-  .|.|.+++.+.+....  ...| ......+|.+.++++. .       .+++++  +++
T Consensus        38 G~~~lD~~~g~~~~~lGh~--~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~-~-------~~~v~~--~~s  104 (406)
T PRK12381         38 GKEYIDFAGGIAVNALGHA--HPALREALNEQASKFWHTGNGY-TNEPVLRLAKKLIDAT-F-------ADRVFF--CNS  104 (406)
T ss_pred             CCEEEEcCcCHhhccCCCC--CHHHHHHHHHHHhhcccccCcc-CCHHHHHHHHHHHhhC-C-------CCeEEE--cCC
Confidence            3478999877432223333  6778888888775321  1122 1222345556666552 1       358888  999


Q ss_pred             chhHHHHHHHHHHHhC------CCCEEEEcCCCCcchHHHHhhCCCCeEE----eeeecC--CCCCCChhhHHHHHHcCC
Q 012238          160 GTGSLRLAAALIERYF------PGAKVLISSPTWGNHKNIFNDARVPWSE----YRYYDP--KTVGLDFEGMIADIKAAP  227 (467)
Q Consensus       160 gt~al~l~~~~l~~~~------~gd~Vlv~~P~y~~~~~~~~~~G~~~~~----v~~~~~--~~~~~d~~~l~~~l~~~~  227 (467)
                      |++|++.+.++.....      ...+|+..+.+|..........+.....    .++.+.  ...-.|++.+++.+.   
T Consensus       105 GseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---  181 (406)
T PRK12381        105 GAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALID---  181 (406)
T ss_pred             cHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhcc---
Confidence            9999999866543331      3468999999998765433222221110    011000  001247889988886   


Q ss_pred             CCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC
Q 012238          228 GGSFILLHGCAHNPTGIDP--TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (467)
Q Consensus       228 ~~~~~i~i~~p~NPTG~~~--~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (467)
                      +++.++++ .|.||+|.++  +.+.+++|.++|++||+++|+||+|.++...+   ..+.. ......++   +.+|||.
T Consensus       182 ~~~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G---~~~~~-~~~~v~pD---i~t~sK~  253 (406)
T PRK12381        182 DQTCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTG---ELYAY-MHYGVTPD---VLTTAKA  253 (406)
T ss_pred             CCeeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCc---chhhh-HhhCCCCC---EEEehhh
Confidence            45666665 6999998765  78999999999999999999999998885432   12211 11121223   3589999


Q ss_pred             cccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238          306 LGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  385 (467)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~  385 (467)
                      ++ +|+|+||++   .++++++.            +.......+.+.+.+.+.++...|+.  +    .  -.+.+++++
T Consensus       254 l~-gG~~ig~~~---~~~~~~~~------------~~~~~~~~t~~~~pl~~aaa~a~l~~--l----~--~~~~~~~~~  309 (406)
T PRK12381        254 LG-GGFPIGAML---TTEKCASV------------MTVGTHGTTYGGNPLASAVAGKVLEL--I----N--TPEMLNGVK  309 (406)
T ss_pred             hh-CCCceEEEE---EcHHHHhh------------cCCCCCCCCCCCCHHHHHHHHHHHHH--H----h--hccHHHHHH
Confidence            99 899999995   67777776            54433333445666777777665531  1    1  124667788


Q ss_pred             HHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC------HHHHHHHHHcccEEEeCCC----eEEecc-CChhhHHH
Q 012238          386 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN------KAQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEY  454 (467)
Q Consensus       386 ~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~------~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~~~i~~  454 (467)
                      ++.+++.+.|+ +++....+-......|+++++.+.      ...+...+.++||.+.+.|    ||+++. .+++++++
T Consensus       310 ~~~~~l~~~L~-~l~~~~~~~~~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~~~~t~~~i~~  388 (406)
T PRK12381        310 QRHDWFVERLN-TINARYGLFSEIRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIAGPNVVRFAPALNISEEEITT  388 (406)
T ss_pred             HHHHHHHHHHH-HHHhhCCCEEEEecCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeCCCCEEEEeCCccCCHHHHHH
Confidence            88888888887 653111111112234666665432      1234444455799998754    887764 58899999


Q ss_pred             HHHHHHHHHHhc
Q 012238          455 LADAIIDSYHNV  466 (467)
Q Consensus       455 ~~~~l~~~l~~~  466 (467)
                      ++++|.++++++
T Consensus       389 ~~~~l~~~l~~~  400 (406)
T PRK12381        389 GLDRFARACERF  400 (406)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.89  E-value=1.6e-20  Score=188.29  Aligned_cols=215  Identities=17%  Similarity=0.147  Sum_probs=153.6

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~  199 (467)
                      +.+-..+|++.+|++.+..        ..++  +++|++|+.++  +...+.+||+|+++.|+|.....    .++..|+
T Consensus        62 ~~p~~~~le~~lA~l~g~~--------~~i~--~ssG~~Ai~~~--l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi  129 (398)
T PRK08249         62 TNPTVQAFEEKVRILEGAE--------AATA--FSTGMAAISNT--LYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGV  129 (398)
T ss_pred             CChHHHHHHHHHHHHhCCC--------eEEE--eCChHHHHHHH--HHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCe
Confidence            5566789999999996532        3445  68889999987  55567899999999999986543    4556788


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++.       .|++.+++.++   ++++++++++|+||||.+++.+   +|+++|+++|+++|+|++|..+.... 
T Consensus       130 ~v~~vd~-------~d~e~l~~~i~---~~tklV~ie~p~NPtg~v~dl~---~I~~la~~~gi~livD~t~a~~~~~~-  195 (398)
T PRK08249        130 DVTLCET-------GDHEQIEAEIA---KGCDLLYLETPTNPTLKIVDIE---RLAAAAKKVGALVVVDNTFATPINQN-  195 (398)
T ss_pred             EEEEcCC-------CCHHHHHHhcC---CCCeEEEEECCCCCCCccCCHH---HHHHHHHHcCCEEEEECCcCccccCC-
Confidence            7776543       68999999987   5788999999999999999855   67777999999999999988654321 


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARI  359 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  359 (467)
                           +.    .. ...+++.|+||.++.+|.++|+++  +++++++++            ++..........+...+.+
T Consensus       196 -----~l----~~-~~Divv~S~sK~l~g~~~~~gG~v--v~~~~l~~~------------l~~~~~~~g~~~s~~~a~l  251 (398)
T PRK08249        196 -----PL----AL-GADLVIHSATKFLSGHADALGGVV--CGSKELMEQ------------VYHYREINGATMDPMSAYL  251 (398)
T ss_pred             -----ch----hh-CCCEEeccCceecCCCCCceEEEE--ECCHHHHHH------------HHHHHHhcCCCCCHHHHHH
Confidence                 11    11 123778999999998888886554  478888777            4444333344555555554


Q ss_pred             HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          360 VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       360 ~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                      +..-|.          .+..+.++..+++..+.+.|+ ..
T Consensus       252 ~l~~l~----------tL~~R~~~~~~na~~la~~L~-~~  280 (398)
T PRK08249        252 ILRGMK----------TLKLRVRQQQESAMALAKYLQ-TH  280 (398)
T ss_pred             HHhCcc----------hHHHHHHHHHHHHHHHHHHHH-cC
Confidence            433322          244455666677777888887 53

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.89  E-value=2.4e-20  Score=186.81  Aligned_cols=314  Identities=12%  Similarity=0.079  Sum_probs=194.3

Q ss_pred             hHHHHHHHHHHHhc--CCCCcCCC-CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh----C
Q 012238          103 LDVVKKAENLMLER--GENKEYLP-IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY----F  175 (467)
Q Consensus       103 ~~~v~~a~~~~~~~--~~~~~Y~~-~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~----~  175 (467)
                      .+.+.+++......  +....|.. ..-..++++.++++++..      ++++++  +.|+++++.++...+..+    .
T Consensus        33 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~------~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~  104 (373)
T TIGR03812        33 HPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLP------DAYGYI--VSGGTEANIQAVRAAKNLAREEK  104 (373)
T ss_pred             hHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCC------CCCeEE--eccHHHHHHHHHHHHHHHHhccC
Confidence            45556666665432  11122311 112367778888886442      456777  899999987763332221    3


Q ss_pred             CCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012238          176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (467)
Q Consensus       176 ~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~  255 (467)
                      +||+|++++++|..|...++..|++++.++.+  .++.+|++.+++.+++   ++..+++.+|+||||...+.+   +|.
T Consensus       105 ~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~--~~~~~d~~~l~~~l~~---~~~~vv~~~~~~~tG~~~~~~---~i~  176 (373)
T TIGR03812       105 RTPNIIVPESAHFSFEKAAEMLGLELRYAPLD--EDYTVDVKDVEDLIDD---NTIGIVGIAGTTELGQIDDIE---ELS  176 (373)
T ss_pred             CCcEEEECCcchHHHHHHHHHcCCeEEEEeeC--CCCCcCHHHHHHHHhh---CcEEEEEECCCCCCCccCCHH---HHH
Confidence            67999999999999999999999999999983  4677999999999873   443334445899999987755   666


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCC--CCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhh
Q 012238          256 DVIQEKNHIPFFDVAYQGFASGSL--DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVA  333 (467)
Q Consensus       256 ~~~~~~~~~li~Deay~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~  333 (467)
                      ++|+++|+++|+|++|..+...-.  ......+ .+...+-+ .+..|.+| +++++.|.|+++  ..++++++.     
T Consensus       177 ~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~-d~~~~~~d-~~~~s~~K-~~~~~~~~G~~~--~~~~~~~~~-----  246 (373)
T TIGR03812       177 KIALENGIYLHVDAAFGGFVIPFLKKGYNPPPF-DFSLPGVQ-SITIDPHK-MGLSPIPAGGIL--FRSKSYLKY-----  246 (373)
T ss_pred             HHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCc-cccCCCCC-EEEECccc-cCCCcCCceEEE--EeCHHHHhh-----
Confidence            779999999999999875431100  0000000 00001112 34567779 666788899775  466777665     


Q ss_pred             HHHHHHHHHhhccCc-cC--------CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 012238          334 VIQVKSQLKRLARPM-YS--------NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD  404 (467)
Q Consensus       334 ~~~~~~~l~~~~~~~-~~--------~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~  404 (467)
                             +... .+. ..        ..+.....++...|..  +.   ++.+++..+++.++++++.+.|+ ++|.   
T Consensus       247 -------l~~~-~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~--l~---~~g~~~~~~~~~~~~~~l~~~L~-~~g~---  309 (373)
T TIGR03812       247 -------LSVD-APYLTVKKQATITGTRSGASAAATYAVIKY--LG---REGYRKIVAECMENTRYLVEELK-KIGF---  309 (373)
T ss_pred             -------hccc-CcccCCCCCcceEeechhHHHHHHHHHHHH--hC---HHHHHHHHHHHHHHHHHHHHHHH-hCCC---
Confidence                   3211 111 10        1222222333333321  10   23456788889999999999999 7763   


Q ss_pred             cccccCCcceEEecCC-C-HHHHHHHHHcccEEEeCCC-----eEEeccC-ChhhHHHHHHHHHH
Q 012238          405 WSFILRQIGMFSFTGL-N-KAQSDNMTNKWHVYMTKDG-----RISLAGL-SLAKCEYLADAIID  461 (467)
Q Consensus       405 ~~~~~~~~g~f~~~~l-~-~~~~~~ll~~~gI~v~~gg-----Ris~~~~-~~~~i~~~~~~l~~  461 (467)
                      ..+..+..+ ++.+.+ + .++.++|. ++||.+..+.     ||++... +++++++++++|++
T Consensus       310 ~~~~~~~~~-~v~~~~~~~~~v~~~L~-~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       310 EPVIEPVLN-IVAFEVDDPEEVRKKLR-DRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             eEEcCCCce-EEEEEeCCHHHHHHHHH-HCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence            123344444 333332 2 33445555 4599998762     9988643 77999999999975

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK06460 hypothetical protein; Provisional

Probab=99.88  E-value=2e-20  Score=186.59  Aligned_cols=214  Identities=14%  Similarity=0.080  Sum_probs=148.1

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCC----cchHHHHhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTW----GNHKNIFNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y----~~~~~~~~~~G~  199 (467)
                      ......+|++++|++....       ..+++   .+|++++..+  +...+.+||+|+++.|.|    ..|...++..|+
T Consensus        43 ~~p~~~~L~~~lA~l~g~~-------~~v~~---~sG~~ai~~~--l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~  110 (376)
T PRK06460         43 ANPTVLELTKKIVELENAE-------MGVAF---SSGMGAISTT--ALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGV  110 (376)
T ss_pred             CCccHHHHHHHHHHHhCCC-------cEEEe---CCHHHHHHHH--HHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCc
Confidence            4567889999999996543       24444   6678888887  455577999999998655    455667788999


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      ++..++..       +.+.+++.++   ++++++++++|+||||.+++.+   +|+++|+++|+++|+|++|......  
T Consensus       111 ~v~~~~~~-------~~~~l~~~~~---~~tklV~l~sp~NPtG~v~d~~---~I~~la~~~g~~vivDea~~~~~~~--  175 (376)
T PRK06460        111 NVDASNPG-------SDNIIEKAKS---KRYDVVFVENITNPLLRVVDIT---ELSKVCKENGSILIVDATFSTPINQ--  175 (376)
T ss_pred             EEEEECCC-------CHHHHHHhcC---CCceEEEEECCCCCCCcccCHH---HHHHHHHHcCCEEEEECCcCccccC--
Confidence            88877652       2233433333   5788999999999999999987   5677799999999999998754211  


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccC-CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLY-AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                        .  +.    .. ..++++.|+||.++.. |.|+||++   +++++++.            +++.......+.+...  
T Consensus       176 --~--~l----~~-~~divv~S~sK~l~G~~~~~~G~~~---~~~~l~~~------------l~~~~~~~g~~~~~~~--  229 (376)
T PRK06460        176 --K--PL----EL-GADIVVHSASKFLAGHNDVIAGLAA---GYGKLLNV------------IDQMRRTLGTSLDPHA--  229 (376)
T ss_pred             --C--hh----hc-CCCEEEeecceeccCCCCceEEEEe---cCHHHHHH------------HHHHHHhcCCCCCHHH--
Confidence              1  11    11 2468999999998622 36799985   78888777            5444444333444332  


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                       +..++...       +.++.+.+++.++++.+.+.|+ +.
T Consensus       230 -a~~~l~~~-------~~l~~r~~~~~~n~~~l~~~L~-~~  261 (376)
T PRK06460        230 -AYLTLRGI-------KTLKIRMDVINRNAEQIAEFLE-GH  261 (376)
T ss_pred             -HHHHHhch-------hhHHHHHHHHHHHHHHHHHHHH-cC
Confidence             22223322       2256677788899999999988 54

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.88  E-value=4e-20  Score=185.49  Aligned_cols=328  Identities=13%  Similarity=0.111  Sum_probs=199.9

Q ss_pred             EEecCcccCCCCCCCCchHHHHHHHHHHHhc------CCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           86 LNLGVGAYRTEELQPYVLDVVKKAENLMLER------GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        86 i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~------~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +||+.-.|.   +... .|.++++..+.+++      +....|+...+..+|++++|+++..       ++.+++  ++|
T Consensus         1 ~~f~s~dyL---gl~~-~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~-------e~al~~--~sG   67 (392)
T PLN03227          1 LNFATHDFL---STSS-SPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGT-------ESAILY--SDG   67 (392)
T ss_pred             CCCcCcCcc---CCCC-CHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCC-------CcEEEe--cCc
Confidence            356655553   3332 56677777776643      1113377777899999999999754       346666  555


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC--------CCCcE
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA--------PGGSF  231 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~--------~~~~~  231 (467)
                      .+... .+  +...+.+||.|++.++.|..+...++..+++++.++..+    ..|++.+.+.+...        .++++
T Consensus        68 ~~a~~-~~--i~~l~~~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d----~~~l~~~~~~i~~~~~a~~~~~~~~t~  140 (392)
T PLN03227         68 ASTTS-ST--VAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHND----MKDLRRVLEQVRAQDVALKRKPTDQRR  140 (392)
T ss_pred             HHHHH-HH--HHHhCCCCCEEEEeccccHHHHHHHHHcCCeEEEeCCCC----HHHHHHHHHHhhhhccccccccCCCcE
Confidence            55555 43  455678999999999999998888777787777665521    12334444444311        13678


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCC-CCCCCChhHHHHH-H-hcCCeEEEEecCccCccc
Q 012238          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS-GSLDNDASSVRLF-A-TRGMELLVAQSYSKNLGL  308 (467)
Q Consensus       232 ~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~-~~~~~~~~~~~~~-~-~~~~~~i~~~S~SK~~~~  308 (467)
                      +|++.+++||+|.+.+   +++|.++|++||+++|+||+|. +.. +.  ........+ . ......+++.|+||.+| 
T Consensus       141 ~vi~E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~~~-~g~~g~--~G~g~~~~~g~~p~~~~Div~~slsk~~g-  213 (392)
T PLN03227        141 FLVVEGLYKNTGTLAP---LKELVALKEEFHYRLILDESFS-FGTLGK--SGRGSLEHAGLKPMVHAEIVTFSLENAFG-  213 (392)
T ss_pred             EEEEcCCcCCCCcccC---HHHHHHHHHHcCCEEEEECccc-ccccCC--CCCcHHHHcCCCCCCCceEEEeechhhhh-
Confidence            8999999999999999   4577888999999999999986 432 21  111111111 0 11234788999999876 


Q ss_pred             CCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC-ccC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012238          309 YAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP-MYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  386 (467)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~  386 (467)
                        ++.|++.   +++++++.            ++..... .++ +.+++.+.++...+...      . ..++..+++++
T Consensus       214 --~~gg~v~---~~~~~~~~------------~~~~~~~~~~~~~~~p~~~~aa~~al~~~------~-~~~~~~~~l~~  269 (392)
T PLN03227        214 --SVGGMTV---GSEEVVDH------------QRLSGSGYCFSASAPPFLAKADATATAGE------L-AGPQLLNRLHD  269 (392)
T ss_pred             --ccCcEEe---cCHHHHHH------------HHHhCcCccccCCCCHHHHHHHHHHHHHH------h-cCHHHHHHHHH
Confidence              4458873   77777765            4332222 222 33444444444333211      0 02356677888


Q ss_pred             HHHHHHHHhhhccCCCC------CcccccCCcceEEecCC-C-------------HHHHHHHHHcccEEEeCC-------
Q 012238          387 VRQKLFDSLSAKDKSGK------DWSFILRQIGMFSFTGL-N-------------KAQSDNMTNKWHVYMTKD-------  439 (467)
Q Consensus       387 ~r~~l~~~l~~~~g~~~------~~~~~~~~~g~f~~~~l-~-------------~~~~~~ll~~~gI~v~~g-------  439 (467)
                      +.+++.+.|+ +.+.|.      .........+..+.+.+ +             .++.+.+++ +||++.+.       
T Consensus       270 ~~~~l~~~L~-~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gi~~~~~~~~~~~~  347 (392)
T PLN03227        270 SIANLYSTLT-NSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLS-EGVAVVSTGGHVKKF  347 (392)
T ss_pred             HHHHHHHHHH-hcCCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHH-CCCEEEecccccCCc
Confidence            8888888887 544321      00000111122222222 1             134455555 59988531       


Q ss_pred             ------C--eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          440 ------G--RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 ------g--Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                            .  ||++. ..+++++++++++|+++++++
T Consensus       348 ~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~  383 (392)
T PLN03227        348 LQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAI  383 (392)
T ss_pred             CCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence                  1  77764 358899999999999998764

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.88  E-value=3.6e-20  Score=185.62  Aligned_cols=214  Identities=14%  Similarity=0.130  Sum_probs=151.2

Q ss_pred             CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH----HHHhhCCCC
Q 012238          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK----NIFNDARVP  200 (467)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~----~~~~~~G~~  200 (467)
                      ..-..+|++.+++++..        +++++  ++||++|+.++  +...+.+||+|+++.+.|....    ..++..|++
T Consensus        60 ~p~~~~le~~la~l~g~--------~~~v~--~ssG~~Ai~~a--l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~  127 (390)
T PRK08133         60 NPTVTMFQERLAALEGA--------EACVA--TASGMAAILAV--VMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIE  127 (390)
T ss_pred             ChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcE
Confidence            44578899999999643        35666  89999999987  4556789999999999987544    345678999


Q ss_pred             eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012238          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (467)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~  280 (467)
                      ++.++.       .|++.+++.++   ++++++++++|+||||.+.+.   ++|+++|+++|+++|+|++|.......  
T Consensus       128 v~~vd~-------~d~~~l~~~i~---~~tklV~ie~p~NptG~v~dl---~~I~~la~~~gi~livD~t~~~~~~~~--  192 (390)
T PRK08133        128 TTFVDL-------TDLDAWRAAVR---PNTKLFFLETPSNPLTELADI---AALAEIAHAAGALLVVDNCFCTPALQQ--  192 (390)
T ss_pred             EEEECC-------CCHHHHHHhcC---cCCeEEEEECCCCCCCCcCCH---HHHHHHHHHcCCEEEEECCCcccccCC--
Confidence            988876       27888988886   578899999999999999875   577777999999999999986543321  


Q ss_pred             CChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHH
Q 012238          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV  360 (467)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  360 (467)
                          ++    ..+ ..+++.|+||.++.+|+++|+++  +.+++.++.            +....+......+.+.+.++
T Consensus       193 ----pl----~~g-~Divv~S~sK~~~g~g~~~GG~v--v~~~~~~~~------------~~~~~~~~g~~~~~~~a~~~  249 (390)
T PRK08133        193 ----PL----KLG-ADVVIHSATKYLDGQGRVLGGAV--VGSKELMEE------------VFGFLRTAGPTLSPFNAWVF  249 (390)
T ss_pred             ----ch----hhC-CcEEEeecceeecCCcceEeEEE--EcCHHHHHH------------HHHHHHHhCCCCCHHHHHHH
Confidence                11    112 24789999999999999996654  366666665            33222222333444443332


Q ss_pred             HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       361 ~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                         +..-       +.+..+.++..+++..+.+.|+ +.
T Consensus       250 ---l~gl-------~tl~~R~~~~~~~a~~la~~L~-~~  277 (390)
T PRK08133        250 ---LKGL-------ETLSLRMEAHSANALALAEWLE-AH  277 (390)
T ss_pred             ---Hccc-------chHHHHHHHHHHHHHHHHHHHH-hC
Confidence               2221       1244555666677778888887 54

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.88  E-value=2.9e-20  Score=186.60  Aligned_cols=214  Identities=13%  Similarity=0.111  Sum_probs=147.1

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~  199 (467)
                      +..-..+|++.+|++....        ...+  +.+|+.++..+  ++..+.+||+|+++.|.|..+...+    +..|+
T Consensus        63 ~~p~~~~Le~~lA~l~G~~--------~~~~--~~sG~~Ai~~~--l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~  130 (398)
T PRK07504         63 SNPTVDMFEKRMCALEGAE--------DARA--TASGMAAVTAA--ILCQVKAGDHVVAARALFGSCRYVVETLLPRYGI  130 (398)
T ss_pred             CCchHHHHHHHHHHHhCCC--------eeeE--ecCHHHHHHHH--HHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCe
Confidence            4556789999999996443        2233  57888888776  4556789999999999998765443    45688


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++       .+|++.++++++   +++++|++++|+||||.+++.+   +|.++|+++|+++|+|++|....+.. 
T Consensus       131 ~v~~vd-------~~d~e~l~~ai~---~~tklV~lesp~NptG~v~dl~---~I~~la~~~gi~lvvD~a~a~~~~~~-  196 (398)
T PRK07504        131 ESTLVD-------GLDLDNWEKAVR---PNTKVFFLESPTNPTLEVIDIA---AVAKIANQAGAKLVVDNVFATPLFQK-  196 (398)
T ss_pred             EEEEEC-------CCCHHHHHHhcC---cCceEEEEECCCCCCcEecCHH---HHHHHHHHcCCEEEEECCccccccCC-
Confidence            777764       278999999887   6788999999999999999855   66777999999999999987554321 


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARI  359 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  359 (467)
                           +.    +. ...+++.|+||.++.+|+|+|+++  +.+++.+..        .   ++...+.....++.+.+.+
T Consensus       197 -----~~----~~-gaDivv~S~sK~l~g~g~~~GG~v--v~~~~~i~~--------~---~~~~~~~~g~~~s~~~A~~  253 (398)
T PRK07504        197 -----PL----EL-GAHIVVYSATKHIDGQGRCLGGVV--LSDKAWIEE--------H---LQDYFRHTGPSLSPFNAWT  253 (398)
T ss_pred             -----ch----hh-CCCEEEeeccccccCCccceEEEE--EeCcHHHHH--------H---HHHHHHHhCCCCCHHHHHH
Confidence                 11    11 245789999999999999998664  355554432        0   2222222233445444444


Q ss_pred             HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          360 VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       360 ~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      +...|..          +..+.++..++...+.+.|+
T Consensus       254 ~l~~L~t----------l~~R~~~~~~na~~la~~L~  280 (398)
T PRK07504        254 LLKGLET----------LPVRVRQQTESAAAIADFLA  280 (398)
T ss_pred             HHhccch----------HHHHHHHHHHHHHHHHHHHH
Confidence            4333332          33444555566666677776

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.88  E-value=5.2e-20  Score=183.76  Aligned_cols=215  Identities=15%  Similarity=0.107  Sum_probs=155.5

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~  199 (467)
                      +......|++++|++...        +.+++  ++||++++.++  +...+.|||+|+++.|+|+.....+.    ..|.
T Consensus        50 ~~pt~~~L~~~lA~l~g~--------~~~i~--~~sg~~Ai~~~--l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi  117 (386)
T PRK08045         50 GNPTRDVVQRALAELEGG--------AGAVL--TNTGMSAIHLV--TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY  117 (386)
T ss_pred             CCccHHHHHHHHHHHhCC--------CeEEE--ECCHHHHHHHH--HHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCe
Confidence            566788999999999542        25777  89999999997  45567899999999999986433332    2333


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      ++..++       ..|++.+++.++   ++++++++++|+||||.+++.+   +|.++|+++|+++|+|++|....... 
T Consensus       118 ~v~~vd-------~~d~e~l~~~l~---~~tklV~l~sP~NPtG~v~di~---~I~~ia~~~g~~vivDeay~~~~~~~-  183 (386)
T PRK08045        118 RVLFVD-------QGDEQALRAALA---EKPKLVLVESPSNPLLRVVDIA---KICHLAREAGAVSVVDNTFLSPALQN-  183 (386)
T ss_pred             EEEEeC-------CCCHHHHHHhcc---cCCeEEEEECCCCCCCEecCHH---HHHHHHHHcCCEEEEECCCCccccCC-
Confidence            444432       268899998886   5778999999999999999865   66666899999999999987654321 


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcc-cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                           ++    ..+. .+++.|++|.++ ..+.+.|+++  +.+++++++            +...........+.+.+.
T Consensus       184 -----pl----~~ga-Divv~S~tK~l~G~~d~~~G~vi--~~~~~~~~~------------l~~~~~~~g~~~~p~~~~  239 (386)
T PRK08045        184 -----PL----ALGA-DLVLHSCTKYLNGHSDVVAGVVI--AKDPDVVTE------------LAWWANNIGVTGGAFDSY  239 (386)
T ss_pred             -----ch----hhCC-CEEEeecceeccCCCCceeEEEE--eCcHHHHHH------------HHHHHHhcCCCCCHHHHH
Confidence                 11    1222 388999999985 5667789885  567777776            444444445567777777


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                      ++...|..          +..+.++..+++..+.+.|+ ..
T Consensus       240 l~~rgl~t----------l~~R~~~~~~na~~la~~L~-~~  269 (386)
T PRK08045        240 LLLRGLRT----------LVPRMELAQRNAQAIVKYLQ-TQ  269 (386)
T ss_pred             HHHhhhcc----------HHHHHHHHHHHHHHHHHHHH-cC
Confidence            77666653          44566777777888888887 54

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.88  E-value=2.2e-20  Score=191.41  Aligned_cols=324  Identities=14%  Similarity=0.103  Sum_probs=196.8

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC-----Ccc----hHHHHHHHHHHHhCCCCcccccCceee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-----IEG----LAAFNKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~-----~~G----~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      ..++|+.|.|    .+.. +..+.++....  .. ...|.|     ..|    ..++++.+++++    |.+  .+++.+
T Consensus        69 ~~~~lg~g~~----~~~~-p~~~~~~~~~~--~~-~~~y~~~~~~~~~g~~~~~~e~~~~la~l~----g~~--~~~v~~  134 (447)
T PRK00451         69 YPSFLGAGAY----DHYI-PAVVDHIISRS--EF-YTAYTPYQPEISQGTLQAIFEYQTMICELT----GMD--VANASM  134 (447)
T ss_pred             CcccCccccc----CCcC-cHHHHHHHhch--hH-HHhcCCCCCccchHHHHHHHHHHHHHHHHh----CCC--cceEEe
Confidence            6788999987    3332 55555444322  11 133555     344    223334444443    322  457878


Q ss_pred             eecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhh----CCCCeEEeeeecCCCCCCChhhHHHHHHcCCCC
Q 012238          155 VQGLSGTGSLRLAAALIER-YFPGAKVLISSPTWGNHKNIFND----ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~-~~~gd~Vlv~~P~y~~~~~~~~~----~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (467)
                        |.||++++..+  +++. ..+||+|+++.|.|+.+...++.    .|++++.++++  .+ .+|++.+++.++   ++
T Consensus       135 --~~g~t~~~~~~--~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~--~~-~~d~~~l~~~i~---~~  204 (447)
T PRK00451        135 --YDGATALAEAA--LMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYE--DG-VTDLEALEAAVD---DD  204 (447)
T ss_pred             --cCcHHHHHHHH--HHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCC--CC-CCCHHHHHHhcC---CC
Confidence              99999998876  3444 35899999999999988877664    69999999984  24 799999999987   57


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEE--eccCCCCCCCCCCCChhHHHHHHhcCCeEEEEe---cCcc
Q 012238          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF--DVAYQGFASGSLDNDASSVRLFATRGMELLVAQ---SYSK  304 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~--Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---S~SK  304 (467)
                      ++++++++| ||||.+.+   +++|+++|+++|+++++  |.+..++...   .        .+. ...+++.   +|||
T Consensus       205 t~~v~l~~p-n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g~~~~---~--------~~~-~~D~~~~s~~k~~~  268 (447)
T PRK00451        205 TAAVVVQYP-NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSLGLLKP---P--------GEY-GADIVVGEGQPLGI  268 (447)
T ss_pred             eEEEEEECC-CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHhccCCC---c--------ccC-CCCEEEECCCcCCC
Confidence            888899999 89999866   55777889999999988  5442221100   0        011 2234444   7888


Q ss_pred             CcccCCCccceEEEecCCHHHHhhhhhhh-HHH---------------HH-HHHHhhccCccCCCchHHH-HHHHHHhCC
Q 012238          305 NLGLYAERIGAMNVVCSSSDLAARCCEVA-VIQ---------------VK-SQLKRLARPMYSNPPVHGA-RIVANVVGN  366 (467)
Q Consensus       305 ~~~~~G~RiG~~~~v~~~~~~~~~~~~~~-~~~---------------~~-~~l~~~~~~~~~~~~~~~~-~~~~~~L~~  366 (467)
                      .+.+.|+|+||++   .++++++. +++. .+.               .. ..++........+.+...+ .++...+..
T Consensus       269 ~~~~~Gpg~G~l~---~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~  344 (447)
T PRK00451        269 PLSFGGPYLGFFA---TRKKLVRQ-MPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSL  344 (447)
T ss_pred             CCCCCCCCchHHH---hhHHHHhh-CCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHH
Confidence            8888999999995   56666654 1000 000               00 0001111111112222222 122111210


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEe--cC--CC-HHHHHHHHHcccEEE-eCC-
Q 012238          367 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF--TG--LN-KAQSDNMTNKWHVYM-TKD-  439 (467)
Q Consensus       367 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~--~~--l~-~~~~~~ll~~~gI~v-~~g-  439 (467)
                        +   -.+.++++.+++.++++++.+.|+ +++.   +++.  .+++|.+  +.  .+ .++.++|+++ ||.. .++ 
T Consensus       345 --~---~~~g~~~~~~~~~~~~~~l~~~L~-~~~g---~~~~--~~~~~~~~~v~~~~~~~~~~~~L~~~-gi~~~~~~~  412 (447)
T PRK00451        345 --L---GPEGLRELAEQNHQKAHYLAERLA-EIGG---VELF--DGPFFNEFVVRLPKPAEEVNEALLEK-GILGGYDLG  412 (447)
T ss_pred             --H---CHHHHHHHHHHHHHHHHHHHHHHh-hcCC---EEec--CCCeEEEEEEecCCCHHHHHHHHHhc-CCCCCcccc
Confidence              0   023467888999999999999998 7642   4443  3455543  33  23 4556677664 6642 111 


Q ss_pred             -------C--eEEecc-CChhhHHHHHHHHHHHH
Q 012238          440 -------G--RISLAG-LSLAKCEYLADAIIDSY  463 (467)
Q Consensus       440 -------g--Ris~~~-~~~~~i~~~~~~l~~~l  463 (467)
                             +  |+++.. .+++++++++++|++++
T Consensus       413 ~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        413 RYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             cccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence                   2  888763 37799999999998865

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.88  E-value=2.1e-19  Score=181.63  Aligned_cols=328  Identities=12%  Similarity=0.081  Sum_probs=207.6

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC-CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~-~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +.+.+|+..|..-...|.  -.|.+.+++.+.++.... ..+.......+|.+.++++. +       .+++++  +++|
T Consensus        40 g~~~lD~~~~~~~~~~Gh--~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-------~~~~~~--~~SG  107 (401)
T PRK00854         40 GNRYLDCLSAYSAVNQGH--CHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALT-G-------SHKVLP--MNSG  107 (401)
T ss_pred             CCEEEEcCcchhhccCCC--CCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhC-C-------CCEEEE--eCCc
Confidence            347899877743111122  267788888887754211 11123344566777777763 2       247888  8999


Q ss_pred             hhHHHHHHHHHHHh-------CCC-CEEEEcCCCCcchHHHHhhCCC-------------CeEEeeeecCCCCCCChhhH
Q 012238          161 TGSLRLAAALIERY-------FPG-AKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYDPKTVGLDFEGM  219 (467)
Q Consensus       161 t~al~l~~~~l~~~-------~~g-d~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~d~~~l  219 (467)
                      ++|++.+..++...       .+| ++|++..-+|......+...+.             .+..++.       .|++.+
T Consensus       108 s~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l  180 (401)
T PRK00854        108 AEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-------GDAEAL  180 (401)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-------CCHHHH
Confidence            99999985554332       124 6888888877654333222221             1222221       488999


Q ss_pred             HHHHHcCCCCcEEEEeCCCCCCCCCCCCH-HHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238          220 IADIKAAPGGSFILLHGCAHNPTGIDPTP-EQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (467)
Q Consensus       220 ~~~l~~~~~~~~~i~i~~p~NPTG~~~~~-~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (467)
                      ++.+.   ++++++++++|+||||.++++ +.+++|.++|++||+++|+||+|.++...+   ..+.. .......++++
T Consensus       181 e~~i~---~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g---~~~~~-~~~g~~~D~~~  253 (401)
T PRK00854        181 EAAIT---PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTG---KLLAE-EHEGIEADVTL  253 (401)
T ss_pred             HHHhC---CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc---hHhHH-hhcCCCCCEEE
Confidence            99886   578899999999999999974 469999999999999999999998775432   11111 11111223332


Q ss_pred             EecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                         ++|.++...+|+||++   .++++++.            +.........+.+.+.+.++...|+..      .+  .
T Consensus       254 ---~~K~l~gg~~~ig~v~---~~~~~~~~------------l~~~~~~~t~~~~~~~~aa~~a~L~~l------~~--~  307 (401)
T PRK00854        254 ---IGKALSGGFYPVSAVL---SNSEVLGV------------LKPGQHGSTFGGNPLACAVARAALKVL------TE--E  307 (401)
T ss_pred             ---ecccccCCccCeEEEE---EcHHHHhc------------ccCCCCCCCCCcCHHHHHHHHHHHHHH------HH--c
Confidence               3688874447999995   77777776            543333333355777777777666421      11  2


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEec--C--CC-HHHHHHHHHcccEEEeCCC----eEEec-cCC
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT--G--LN-KAQSDNMTNKWHVYMTKDG----RISLA-GLS  448 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~--~--l~-~~~~~~ll~~~gI~v~~gg----Ris~~-~~~  448 (467)
                      ...++++++++++.+.|+ +++.+. +....+.|.++.+.  +  .+ .++++.|++ +||.+.+.+    ||++. ..+
T Consensus       308 ~~~~~~~~~~~~l~~~L~-~~~~~~-~~~~~g~g~~~~i~~~~~~~~~~~~~~~L~~-~GV~v~~~~~~~lR~~p~~~~t  384 (401)
T PRK00854        308 GMIENAAEMGAYFLEGLR-SIRSNI-VREVRGRGLMLAVELEPEAGGARQYCEALKE-RGLLAKDTHDHTIRLAPPLVIT  384 (401)
T ss_pred             CHHHHHHHHHHHHHHHHH-hhccCc-eEEEeccceEEEEEEecCchhHHHHHHHHHH-CCeEEecCCCCEEEEeCCcccC
Confidence            356778888899999998 765311 11224556655442  2  12 344566665 599998653    88863 348


Q ss_pred             hhhHHHHHHHHHHHHH
Q 012238          449 LAKCEYLADAIIDSYH  464 (467)
Q Consensus       449 ~~~i~~~~~~l~~~l~  464 (467)
                      ++++++++++|++++.
T Consensus       385 ~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        385 REQVDWALEQIAKVLA  400 (401)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            8999999999998874

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.88  E-value=5.8e-20  Score=183.33  Aligned_cols=219  Identities=15%  Similarity=0.095  Sum_probs=151.9

Q ss_pred             CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CC
Q 012238          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-AR  198 (467)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~-~G  198 (467)
                      .+| +.....+|++++|++..        .+++++  ++||++|+.++  +...+.+||+|+++.|+|......+.. .+
T Consensus        46 ~R~-~~p~~~~le~~lA~l~g--------~~~v~~--~~gg~~Ai~~~--l~all~~GD~Vl~~~p~y~~~~~~~~~~~~  112 (382)
T TIGR02080        46 SRS-GNPTRDLLQQALAELEG--------GAGAVV--TNTGMSAIHLV--TTALLGPDDLLVAPHDCYGGTYRLLNALAK  112 (382)
T ss_pred             cCC-CCchHHHHHHHHHHHhC--------CCcEEE--EcCHHHHHHHH--HHHHcCCCCEEEEcCCCcHHHHHHHHHHHh
Confidence            344 55667899999999853        246777  99999999998  455678999999999999865544332 22


Q ss_pred             CCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCC
Q 012238          199 VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS  278 (467)
Q Consensus       199 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~  278 (467)
                      .....+...+    ..|++.++++++   ++++++++++|+||||.+++.+   +|+++|+++|+++|+|++|..+... 
T Consensus       113 ~~~~~v~~~d----~~d~~~l~~ai~---~~tklV~l~~p~NPtG~~~dl~---~I~~la~~~g~~vvvD~a~~~~~~~-  181 (382)
T TIGR02080       113 KGCFRVLFVD----QGDEQALRAALA---QKPKLVLIETPSNPLLRVVDIA---KICHLAKAVGAVVVVDNTFLSPALQ-  181 (382)
T ss_pred             hcCeEEEEEC----CCCHHHHHHhcC---cCceEEEEECCCCCCCEecCHH---HHHHHHHHcCCEEEEECCCcccccC-
Confidence            2223333321    247899999887   5688999999999999999865   6777799999999999999765432 


Q ss_pred             CCCChhHHHHHHhcCCeEEEEecCccCcc-cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHH
Q 012238          279 LDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGA  357 (467)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  357 (467)
                         .  ++    ..+ ..++++|+||.++ .+|++.|+++  +.+++++++            +...........+.+.+
T Consensus       182 ---~--pl----~~g-aDivv~S~sK~l~G~~~~~~G~i~--~~~~~~~~~------------l~~~~~~~g~~~sp~~a  237 (382)
T TIGR02080       182 ---N--PL----ALG-ADLVLHSCTKYLNGHSDVIAGAVI--AKDPQVAEE------------LAWWANNLGVTGGAFDS  237 (382)
T ss_pred             ---C--ch----hhC-CCEEEeecceeccCCCCceeEEEE--eCCHHHHHH------------HHHHHHccCCCCCHHHH
Confidence               1  11    112 2488899999886 5788999985  567777776            54444444445566555


Q ss_pred             HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       358 ~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      ..+..-|+          .+..+.++..++...+.+.|+
T Consensus       238 ~l~lr~l~----------tl~~R~~~~~~na~~~a~~L~  266 (382)
T TIGR02080       238 YLTLRGLR----------TLVARMRLQQRNAQAIVEYLQ  266 (382)
T ss_pred             HHHHcccc----------hHHHHHHHHHHHHHHHHHHHH
Confidence            54433222          233445566677777777776

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.87  E-value=4.2e-20  Score=183.64  Aligned_cols=272  Identities=17%  Similarity=0.135  Sum_probs=179.2

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~  199 (467)
                      +.....+|++++|++. .       ++.++   +.+|++++.++  +...+.+||+|+++.|+|..+...+    +..|+
T Consensus        49 ~~p~~~~Le~~lA~l~-~-------~~~v~---~~sG~~Ai~~~--l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~  115 (366)
T PRK07582         49 SNPTWRALEAALGELE-G-------AEALV---FPSGMAAITAV--LRALLRPGDTVVVPADGYYQVRALAREYLAPLGV  115 (366)
T ss_pred             CCccHHHHHHHHHHHc-C-------CCEEE---ECCHHHHHHHH--HHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE
Confidence            6778999999999995 2       34444   57778899887  4556789999999999998886644    45799


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++..++      .+    .+.   ++++++++++|+||||.+.+   +++|+++|+++|+++|+|++|.... +. 
T Consensus       116 ~v~~v~~~~~------~~----~~~---~~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~~~-~~-  177 (366)
T PRK07582        116 TVREAPTAGM------AE----AAL---AGADLVLAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTATPL-GQ-  177 (366)
T ss_pred             EEEEECCCCh------HH----Hhc---cCceEEEEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCCCcc-cc-
Confidence            9888876311      11    122   46788899999999998765   5678888999999999999985321 11 


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCc-ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                        .  ++    +.+. .++++|+||.+ |.+|+|+||++  +.++++++.            ++.........++.+.+.
T Consensus       178 --~--p~----~~g~-Divv~S~sK~l~G~~g~~~G~v~--~~~~~l~~~------------l~~~~~~~g~~~~~~~a~  234 (366)
T PRK07582        178 --R--PL----ELGA-DLVVASDTKALTGHSDLLLGYVA--GRDPELMAA------------VERWRLLAGAIPGPFEAW  234 (366)
T ss_pred             --C--ch----hcCC-cEEEecccccccCCCCeeEEEEE--cCcHHHHHH------------HHHHHHHhCCCCCHHHHH
Confidence              1  11    1222 37889999988 45689999995  456777776            444444444456666666


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC------CCCccccc----------CCcceEEec-CCC
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS------GKDWSFIL----------RQIGMFSFT-GLN  421 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~------~~~~~~~~----------~~~g~f~~~-~l~  421 (467)
                      .+...|..          +..+.++..++...+.+.|+ +...      |+ +.-.+          ..||++.|. + +
T Consensus       235 l~~r~l~t----------l~~R~~~~~~na~~la~~L~-~~p~v~~v~yp~-l~~~p~~~~~~~~~~~~gg~~s~~~~-~  301 (366)
T PRK07582        235 LAHRSLGT----------LGLRFARQCANALAVAELLA-GHPAVRGVRYPG-LPGDPAHEVAARQMRRFGGLVSFELA-D  301 (366)
T ss_pred             HHHhcccc----------HHHHHHHHHHHHHHHHHHHH-hCCCccEEECCC-CCCCccHHHHHhhCCCCcceEEEEeC-C
Confidence            65555543          23333555566677777776 4321      11 01011          246666543 3 5


Q ss_pred             HHHHHHHHHcccEEEe-C--------------------CC--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          422 KAQSDNMTNKWHVYMT-K--------------------DG--RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       422 ~~~~~~ll~~~gI~v~-~--------------------gg--Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                      .+.+.+.+++.++... +                    .|  |||++-   |+.+.+++.|.++++.
T Consensus       302 ~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGl---E~~~dli~dl~~al~~  365 (366)
T PRK07582        302 AAAAERFVAASRLVVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGI---EDTDDLVADLERALDA  365 (366)
T ss_pred             HHHHHHHHHhCCcceecccCCCccchhhhHHHcCCCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence            6666677776666442 1                    12  999987   4566667777777654

>PRK14012 cysteine desulfurase; Provisional

Probab=99.87  E-value=6.7e-20  Score=185.39  Aligned_cols=320  Identities=16%  Similarity=0.099  Sum_probs=196.9

Q ss_pred             ccCCCCCCCCchHHHHHHHHHHHh--cCCC--C------cCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           92 AYRTEELQPYVLDVVKKAENLMLE--RGEN--K------EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        92 ~~~d~~~~p~~~~~v~~a~~~~~~--~~~~--~------~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      .|+|.++..++++.+.+++.+.+.  ....  .      .|.......++|+.+++++...      ++++++  ++|+|
T Consensus         5 iyld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~------~~~v~~--~~g~t   76 (404)
T PRK14012          5 IYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGAD------PREIVF--TSGAT   76 (404)
T ss_pred             EEecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcC------cCeEEE--eCCHH
Confidence            355555666668889999888764  1110  0      1111234678899999986533      678888  99999


Q ss_pred             hHHHHHHHHHHH--hCCCCEEEEcCCCCcchHHHH---hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeC
Q 012238          162 GSLRLAAALIER--YFPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG  236 (467)
Q Consensus       162 ~al~l~~~~l~~--~~~gd~Vlv~~P~y~~~~~~~---~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~  236 (467)
                      ++++++...+..  ..+||+|+++.++|+.+...+   +..|++++.++.+  .++.+|++.+++.++   +++++++++
T Consensus        77 ~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~--~~g~~d~~~l~~~i~---~~t~lv~~~  151 (404)
T PRK14012         77 ESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQ--SNGIIDLEKLEAAMR---DDTILVSIM  151 (404)
T ss_pred             HHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccC--CCCcCCHHHHHHhcC---CCCEEEEEE
Confidence            999987433321  358999999999997765544   3469999999874  456789999999997   577899999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceE
Q 012238          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (467)
Q Consensus       237 ~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~  316 (467)
                      +++||||.+.+.   ++|.++|+++|+++|+|+++. +....  .+   +    ....-.+++.|++|.+|..  ++|++
T Consensus       152 ~~~n~tG~~~~~---~~I~~la~~~g~~vivD~a~~-~g~~~--~~---~----~~~~~D~~~~s~~K~~gp~--g~G~l  216 (404)
T PRK14012        152 HVNNEIGVIQDI---AAIGEICRERGIIFHVDAAQS-VGKVP--ID---L----SKLKVDLMSFSAHKIYGPK--GIGAL  216 (404)
T ss_pred             CcCCCccchhhH---HHHHHHHHHcCCEEEEEcchh-cCCcc--cC---c----ccCCCCEEEEehhhccCCC--ceEEE
Confidence            999999998875   577777999999999999954 22111  11   1    1112346677999988743  47888


Q ss_pred             EEecCCHHHHhhhhhhhHHHHHHHHHhh-c-----cCccCC-CchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012238          317 NVVCSSSDLAARCCEVAVIQVKSQLKRL-A-----RPMYSN-PPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ  389 (467)
Q Consensus       317 ~~v~~~~~~~~~~~~~~~~~~~~~l~~~-~-----~~~~~~-~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~  389 (467)
                      +  +.+... .+            +... .     .....+ ++.........++..   .   +.......++.++.++
T Consensus       217 ~--~~~~~~-~~------------~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~---~---~~~~~~~~~~~~~l~~  275 (404)
T PRK14012        217 Y--VRRKPR-VR------------LEAQMHGGGHERGMRSGTLPTHQIVGMGEAARI---A---KEEMATENERIRALRD  275 (404)
T ss_pred             E--EecCCC-CC------------CCceecCCCccCCccCCCcCHHHHHHHHHHHHH---H---HhhHHHHHHHHHHHHH
Confidence            6  233321 12            1110 0     001111 222221122222211   1   1124456677788888


Q ss_pred             HHHHHhhhccCCCCCccccc-----CCcceEEecC-CCHHHHHHHHHcccEEEeCC------------------------
Q 012238          390 KLFDSLSAKDKSGKDWSFIL-----RQIGMFSFTG-LNKAQSDNMTNKWHVYMTKD------------------------  439 (467)
Q Consensus       390 ~l~~~l~~~~g~~~~~~~~~-----~~~g~f~~~~-l~~~~~~~ll~~~gI~v~~g------------------------  439 (467)
                      ++.+.|+ .+..   +....     ....+++|+. .+.+.+...++  ++.+..|                        
T Consensus       276 ~l~~~L~-~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~  349 (404)
T PRK14012        276 RLWNGIK-DIEE---VYLNGDLEQRVPGNLNVSFNYVEGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELA  349 (404)
T ss_pred             HHHHHHh-cCCC---EEEeCCccccCCCEEEEEEeCcCHHHHHHhCC--CeEEEchhhhCCCCCCCCHHHHHcCCChhhc
Confidence            8888887 5421   22211     1122334433 23333333333  3433222                        


Q ss_pred             -C--eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          440 -G--RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 -g--Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                       +  ||+++. .+++++++++++|+++++.+
T Consensus       350 ~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~  380 (404)
T PRK14012        350 HSSIRFSLGRFTTEEEIDYAIELVRKSIGKL  380 (404)
T ss_pred             CceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence             2  999875 37799999999999988654

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.87  E-value=3.4e-19  Score=172.85  Aligned_cols=325  Identities=14%  Similarity=0.080  Sum_probs=213.6

Q ss_pred             CCCCchHHHHHHHHHHHhcCCCCcCCC--CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhC
Q 012238           98 LQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF  175 (467)
Q Consensus        98 ~~p~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~  175 (467)
                      |+.++++.|++++..-..    ..+.|  ..-..+.++.+...+....     .+-+++  +.+||.+++.+  +.+.+.
T Consensus        12 GP~~v~~~V~~am~~~~~----~h~s~~F~~~~~~~~~~L~~v~~t~~-----~~~~ll--~gsGt~amEAa--v~sl~~   78 (383)
T COG0075          12 GPVPVPPRVLLAMARPMV----GHRSPDFVGIMKEVLEKLRKVFGTEN-----GDVVLL--SGSGTLAMEAA--VASLVE   78 (383)
T ss_pred             CCCCCCHHHHHHhcCCCC----CCCCHHHHHHHHHHHHHHHHHhcCCC-----CcEEEE--cCCcHHHHHHH--HHhccC
Confidence            444568889888755332    12222  1223444454555543321     122334  78889999987  666777


Q ss_pred             CCCEEEEcCCCCc--chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 012238          176 PGAKVLISSPTWG--NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (467)
Q Consensus       176 ~gd~Vlv~~P~y~--~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~  253 (467)
                      |||+|++...+.+  .+.++++.+|++++.+..  +++..+|++++++.+++. +..+++.+++...+||+..+.+   +
T Consensus        79 pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~--~wg~~v~p~~v~~~L~~~-~~~~~V~~vH~ETSTGvlnpl~---~  152 (383)
T COG0075          79 PGDKVLVVVNGKFGERFAEIAERYGAEVVVLEV--EWGEAVDPEEVEEALDKD-PDIKAVAVVHNETSTGVLNPLK---E  152 (383)
T ss_pred             CCCeEEEEeCChHHHHHHHHHHHhCCceEEEeC--CCCCCCCHHHHHHHHhcC-CCccEEEEEeccCcccccCcHH---H
Confidence            9999999998775  567899999999999987  567789999999999954 3455777788889999988655   7


Q ss_pred             HHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc-cCCCccceEEEecCCHHHHhh---h
Q 012238          254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAAR---C  329 (467)
Q Consensus       254 l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~v~~~~~~~~~---~  329 (467)
                      |+++|++||.++|+|.+ ..+.-.+.+.+.|.        -++++.+ .-|.++ .||+  |.+.   .+++..++   .
T Consensus       153 I~~~~k~~g~l~iVDaV-sS~Gg~~~~vd~wg--------iDv~itg-SQK~l~~PPGl--a~v~---~S~~a~e~~~~~  217 (383)
T COG0075         153 IAKAAKEHGALLIVDAV-SSLGGEPLKVDEWG--------IDVAITG-SQKALGAPPGL--AFVA---VSERALEAIEER  217 (383)
T ss_pred             HHHHHHHcCCEEEEEec-ccCCCcccchhhcC--------ccEEEec-CchhccCCCcc--ceeE---ECHHHHHHHhcC
Confidence            77779999999999999 44544333344443        3455444 456664 5774  6664   44444443   2


Q ss_pred             hhh-hHHHHHHHHHhhcc-CccC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcc
Q 012238          330 CEV-AVIQVKSQLKRLAR-PMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS  406 (467)
Q Consensus       330 ~~~-~~~~~~~~l~~~~~-~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~  406 (467)
                      +.+ -|.++....+.+.. ..+. .+|...-.++..+|+     ...++.++.+.+|++++.+.+++.++ .+|+    +
T Consensus       218 ~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~-----~i~~EGle~r~~RH~~~~~a~r~~~~-alGl----~  287 (383)
T COG0075         218 KHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALD-----LILEEGLEARIARHRRLAEALRAGLE-ALGL----E  287 (383)
T ss_pred             CCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHH-----HHHHhhHHHHHHHHHHHHHHHHHHHH-HcCC----c
Confidence            223 35555555444432 2222 344444444444443     22245588999999999999999999 9986    3


Q ss_pred             cccCC-------cceEEecCCCH-HHHHHHHHcccEEEeCC-----C---eEE-eccCChhhHHHHHHHHHHHHHhc
Q 012238          407 FILRQ-------IGMFSFTGLNK-AQSDNMTNKWHVYMTKD-----G---RIS-LAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       407 ~~~~~-------~g~f~~~~l~~-~~~~~ll~~~gI~v~~g-----g---Ris-~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .....       ..+++--+++. +....+++++||.+.+|     |   ||+ ++..+.+++.+++.+|..++.++
T Consensus       288 ~~~~~~~~s~tvta~~~P~g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~  364 (383)
T COG0075         288 LFADPERRSPTVTAIKVPEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALREL  364 (383)
T ss_pred             cccCcccCCCceEEEECCCCCCcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHc
Confidence            33311       11112224443 33447888889999888     2   997 56668899999999999999865

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.87  E-value=7.7e-20  Score=183.18  Aligned_cols=275  Identities=15%  Similarity=0.118  Sum_probs=176.6

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~  199 (467)
                      +.....+|++.+|++...       ++.++   +++|+.++..+  +...+.+||+|+++.|.|......++    ..|+
T Consensus        59 ~~pt~~~Le~~lA~l~G~-------~~al~---~~sG~~Ai~~~--l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi  126 (386)
T PRK06767         59 GNPTVKLFEERMAVLEGG-------EEALA---FGSGMAAISAT--LIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMI  126 (386)
T ss_pred             CCcchHHHHHHHHHHhCC-------CcEEE---ECCHHHHHHHH--HHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCe
Confidence            556678999999999643       33444   47778888876  55567899999999999876655543    3454


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      ++..++.       .|++.++++++   ++++++++++|+||||.+++.+   +|.++|+++|+++|+|++|....... 
T Consensus       127 ~~~~~~~-------~d~~~l~~~i~---~~tklV~lesp~NptG~v~dl~---~I~~la~~~g~~vivD~a~a~~~~~~-  192 (386)
T PRK06767        127 THSFCDM-------ETEADIENKIR---PNTKLIFVETPINPTMKLIDLK---QVIRVAKRNGLLVIVDNTFCSPYLQR-  192 (386)
T ss_pred             EEEEeCC-------CCHHHHHHhhC---cCceEEEEeCCCCCCceecCHH---HHHHHHHHcCCEEEEECCCcccccCC-
Confidence            4433322       47889988886   5788999999999999999865   66667999999999999986433221 


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccCCCcc-ceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                           ++    ..+ ..+++.|+||.++.+|+|+ ||++   ++++.++.        +...+.   .......+.+.+.
T Consensus       193 -----pl----~~g-~Div~~S~sK~l~g~g~~~gG~v~---~~~~~i~~--------~~~~~~---~~~g~~~~~~~a~  248 (386)
T PRK06767        193 -----PL----ELG-CDAVVHSATKYIGGHGDVVAGVTI---CKTRALAE--------KIRPMR---KDIGGIMAPFDAW  248 (386)
T ss_pred             -----ch----hcC-CcEEEecCcceecCCCCceeEEEE---eChHHHHH--------HHHHHH---HHhCCCCCHHHHH
Confidence                 11    112 2477899999999899997 7774   66666665        222121   1122334444444


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcc-cc-----------cCCcceEEec-CCCHHH-
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS-FI-----------LRQIGMFSFT-GLNKAQ-  424 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~-~~-----------~~~~g~f~~~-~l~~~~-  424 (467)
                      ++...|+.          +..+.++.+++...+.+.|+ +.+.   ++ +.           ...+|++.|. +-+.+. 
T Consensus       249 l~~~~L~t----------l~~r~~~~~~~a~~la~~L~-~~p~---v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~  314 (386)
T PRK06767        249 LLLRGLKT----------LAVRMDRHCDNAEKIVSFLK-NHDA---VEGVWYPEGELASRQMKRGGGVISFSIKGGKEET  314 (386)
T ss_pred             HHHcCCCc----------HHHHHHHHHHHHHHHHHHHH-cCCC---ccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHH
Confidence            44333322          33455667778888888888 6531   22 11           2345665443 212222 


Q ss_pred             --HHHHHHcccEEEeCC-------------------------C------eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          425 --SDNMTNKWHVYMTKD-------------------------G------RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       425 --~~~ll~~~gI~v~~g-------------------------g------Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                        +.+.++..++.+.-|                         |      |||++-   |+.+.+++-|.+++..
T Consensus       315 ~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl---E~~~dl~~dl~~al~~  385 (386)
T PRK06767        315 QAFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL---ESWEDIVSDLEQALKK  385 (386)
T ss_pred             HHHHHhCCccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence              222334455554444                         1      999987   5677777777777654

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.87  E-value=1.8e-19  Score=180.91  Aligned_cols=213  Identities=14%  Similarity=0.119  Sum_probs=149.6

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcc----hHHHHhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN----HKNIFNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~----~~~~~~~~G~  199 (467)
                      +.....+|++.+|++...       ++.++   +.+|++++.++  +...+.+||+|+++.|+|..    +...++..|.
T Consensus        58 ~~p~~~~Le~~lA~l~g~-------~~~v~---~~sG~~Ai~~~--l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~  125 (405)
T PRK08776         58 GNPTRDLLGEALAELEGG-------AGGVI---TATGMGAINLV--LNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHF  125 (405)
T ss_pred             CChHHHHHHHHHHHHhCC-------CceEE---EcCHHHHHHHH--HHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCc
Confidence            344567899999998543       33454   47778999987  45557899999999999986    4445566777


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++.       .|++.+++.++   ++++++++++|+||||.+.+   +++|+++|+++|+++|+|++|......  
T Consensus       126 ~v~~v~~-------~d~~~l~~~i~---~~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~~~--  190 (405)
T PRK08776        126 ALITADL-------TDPRSLADALA---QSPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPALQ--  190 (405)
T ss_pred             EEEEECC-------CCHHHHHHhcC---cCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCcccccC--
Confidence            7777654       47889988886   56889999999999999865   567888899999999999998643211  


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccC-CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLY-AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                        .  ++    ..+ ..+++.|.+|.++.+ +...|+++  +.++++.++            +.........+.+.+.+.
T Consensus       191 --~--pl----~~g-aDivv~S~tK~l~g~~~~~~G~vv--~~~~~l~~~------------l~~~~~~~g~~~s~~~a~  247 (405)
T PRK08776        191 --K--PL----EFG-ADLVLHSTTKYINGHSDVVGGAVV--ARDAELHQQ------------LVWWANALGLTGSPFDAF  247 (405)
T ss_pred             --C--cc----ccc-CCEEEecCceeecCCCCceEEEEE--eCCHHHHHH------------HHHHHHhcCCCCCHHHHH
Confidence              1  11    112 238899999999766 46678875  567777766            333322223345666655


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      ++...++          .++.+.++..++...+.+.|+
T Consensus       248 l~~~gl~----------tl~~r~~~~~~na~~la~~L~  275 (405)
T PRK08776        248 LTLRGLR----------TLDARLRVHQENADAIAALLD  275 (405)
T ss_pred             HHHhhhC----------cHHHHHHHHHHHHHHHHHHHH
Confidence            5543332          255666777777888888887

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.86  E-value=3.1e-19  Score=178.79  Aligned_cols=167  Identities=16%  Similarity=0.137  Sum_probs=127.1

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcch----HHHHhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH----KNIFNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~----~~~~~~~G~  199 (467)
                      +.....+|++.+|++.+..        ..++  +++|+.++.++  +...+.+||+|+++.|.|...    ...+...|+
T Consensus        57 ~~p~~~~le~~lA~l~g~~--------~av~--~~sG~~Ai~~~--l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~  124 (391)
T TIGR01328        57 GNPTVSNLEGRIAFLEGTE--------AAVA--TSSGMGAIAAT--LLTILKAGDHLISDECLYGCTFALLEHALTKFGI  124 (391)
T ss_pred             CCchHHHHHHHHHHHhCCC--------cEEE--ECCHHHHHHHH--HHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCe
Confidence            4455778999999996543        3455  68889999887  455577999999999988643    344566888


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++.       .|++.+++.++   +++++|++++|+||||.+.+.+   +|+++|+++|+++|+|++|....... 
T Consensus       125 ~~~~vd~-------~d~e~l~~~i~---~~tklV~le~p~Np~G~v~dl~---~I~~la~~~gi~livD~a~a~~~~~~-  190 (391)
T TIGR01328       125 QVDFINM-------AIPEEVKAHIK---DNTKIVYFETPANPTMKLIDME---RVCRDAHSQGVKVIVDNTFATPMLTN-  190 (391)
T ss_pred             EEEEECC-------CCHHHHHHhhc---cCCeEEEEECCCCCCCcccCHH---HHHHHHHHcCCEEEEECCCchhccCC-
Confidence            8888766       27888988886   5788999999999999988755   67777999999999999987543321 


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhh
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                           ++    ..+ ..+++.|+||.++.+|.++|+++  ++++++++.
T Consensus       191 -----~~----~~g-~Divv~S~sK~lgg~g~~~gG~v--~~~~~li~~  227 (391)
T TIGR01328       191 -----PV----ALG-VDVVVHSATKYIGGHGDVVAGLI--CGKAELLQQ  227 (391)
T ss_pred             -----ch----hcC-CCEEEccccccccCCCCceEEEE--EcCHHHHHH
Confidence                 11    122 33888999999999998875553  477887776

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.86  E-value=3.9e-19  Score=177.97  Aligned_cols=213  Identities=15%  Similarity=0.118  Sum_probs=145.2

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~  199 (467)
                      +.....+|++++|++....       ..++   +.+|++|+.++  +...+.+||+|+++.|+|......+    +..|+
T Consensus        59 ~~p~~~~Le~~lA~~~g~~-------~~i~---~~sG~~Ai~~~--l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi  126 (388)
T PRK07811         59 GNPTRTALEEQLAALEGGA-------YGRA---FSSGMAATDCL--LRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGV  126 (388)
T ss_pred             CCccHHHHHHHHHHHhCCC-------ceEE---eCCHHHHHHHH--HHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCe
Confidence            5677899999999996543       2343   46789999998  4555789999999999998543332    33566


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++.       .|++.+++.++   +++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....... 
T Consensus       127 ~~~~~d~-------~d~e~l~~~i~---~~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~~-  192 (388)
T PRK07811        127 EYTPVDL-------SDLDAVRAAIT---PRTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASPYLQQ-  192 (388)
T ss_pred             EEEEeCC-------CCHHHHHHhcC---cCCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCccccCC-
Confidence            6666543       58899999887   57889999999999998655   5577788999999999999987654321 


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                           ++    .. ...+++.|++|.++.+| .+.||++  +.++++.++            +...........+...+.
T Consensus       193 -----p~----~~-gaDivv~S~sK~l~g~~~~~gG~vv--~~~~~l~~~------------~~~~~~~~g~~~s~~~a~  248 (388)
T PRK07811        193 -----PL----AL-GADVVVHSTTKYIGGHSDVVGGALV--TNDEELDEA------------FAFLQNGAGAVPGPFDAY  248 (388)
T ss_pred             -----ch----hh-CCcEEEecCceeecCCCCcEEEEEE--ECCHHHHHH------------HHHHHHhcCCCCCHHHHH
Confidence                 11    11 23488999999998765 4568885  567776665            333322222334444433


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      ++...|..          +..+.++..++...+.+.|+
T Consensus       249 l~~~~L~t----------l~~R~~~~~~na~~la~~L~  276 (388)
T PRK07811        249 LTLRGLKT----------LAVRMDRHSENAEAVAEFLA  276 (388)
T ss_pred             HHHhccCc----------HHHHHHHHHHHHHHHHHHHH
Confidence            33333332          33444555566667777776

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.86  E-value=3.4e-19  Score=179.19  Aligned_cols=214  Identities=17%  Similarity=0.130  Sum_probs=146.5

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcch----HHHHhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH----KNIFNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~----~~~~~~~G~  199 (467)
                      +.....+|+++++++....        ..++  +++|+.++.++  +...+.+||+|+++.|+|...    ...++..|+
T Consensus        63 ~~p~~~~le~~lA~l~g~~--------~~i~--~~sG~~Al~~~--l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~  130 (403)
T PRK07503         63 SNPTLALLEQRMASLEGGE--------AAVA--LASGMGAITAT--LWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGV  130 (403)
T ss_pred             CCchHHHHHHHHHHHhCCC--------cEEE--EcCHHHHHHHH--HHHHcCCCCEEEEccCccchHHHHHHHHHhhCCE
Confidence            4456889999999996532        2344  57889999987  445578999999999998653    334567898


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++.       .|++.+++.++   +++++|++++|+||||.+.+.   ++|+++|+++|+++|+|++|....... 
T Consensus       131 ~v~~vd~-------~d~~~l~~~i~---~~tklV~le~p~NPtG~~~di---~~I~~la~~~gi~lIvD~a~a~~~~~~-  196 (403)
T PRK07503        131 TVRHVDL-------TDPAALKAAIS---DKTRMVYFETPANPNMRLVDI---AAVAEIAHGAGAKVVVDNTYCTPYLQR-  196 (403)
T ss_pred             EEEEeCC-------CCHHHHHHhcC---ccCcEEEEeCCCCCCCeeeCH---HHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            8888866       37889998887   577899999999999998875   577777999999999999987543321 


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                           ++    .. ...+++.|+||.++.+| .|.||++   .+++++++        ++..  ..........+.+.+.
T Consensus       197 -----~l----~~-g~Di~v~S~tK~l~g~gd~~gG~v~---~~~~l~~~--------l~~~--~~~~~~g~~~s~~~a~  253 (403)
T PRK07503        197 -----PL----EL-GADLVVHSATKYLGGHGDITAGLVV---GGKALADR--------IRLE--GLKDMTGAVMSPFDAF  253 (403)
T ss_pred             -----ch----hh-CCCEEEccccccccCCCceeEEEEE---cCHHHHHH--------HHhh--hHHhCcCCCCCHHHHH
Confidence                 11    11 23488999999999876 5667774   77777776        3210  1122223345555544


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      ++..-|+          .+..+.++..++...+.+.|+
T Consensus       254 l~l~~L~----------tl~~r~~~~~~na~~~a~~L~  281 (403)
T PRK07503        254 LLMRGLK----------TLALRMDRHCASAQAVAEWLA  281 (403)
T ss_pred             HHHcCcc----------hHHHHHHHHHHHHHHHHHHHH
Confidence            4433332          133344444456666666666

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.86  E-value=8.9e-20  Score=181.27  Aligned_cols=293  Identities=16%  Similarity=0.088  Sum_probs=184.1

Q ss_pred             CCCCCCCCchHHHHHHHHHHHhcCC--CCcCCCC------cchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHH
Q 012238           94 RTEELQPYVLDVVKKAENLMLERGE--NKEYLPI------EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (467)
Q Consensus        94 ~d~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~------~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~  165 (467)
                      +|.++..++++.+++++.+.+....  ...+...      .-..++|+.+++++...      +++|++  |+|++++++
T Consensus         2 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~------~~~v~~--~~g~t~a~~   73 (353)
T TIGR03235         2 LDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGAD------TEEVIF--TSGATESNN   73 (353)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCC------CCeEEE--eCCHHHHHH
Confidence            4555555668999999988763211  0111111      12568899999986543      678988  999999999


Q ss_pred             HHHHHHHHh--CCC-CEEEEcCCCCcch---HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          166 LAAALIERY--FPG-AKVLISSPTWGNH---KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       166 l~~~~l~~~--~~g-d~Vlv~~P~y~~~---~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      ++...+...  .+| +.|++....|+.+   ...++..|++++.++.+  .++.+|++.+++.++   ++++++++++++
T Consensus        74 ~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~l~~~l~---~~~~lv~~~~~~  148 (353)
T TIGR03235        74 LAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVD--ESGRIDVDELADAIR---PDTLLVSIMHVN  148 (353)
T ss_pred             HHHHHHHHhcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccC--CCCcCCHHHHHHhCC---CCCEEEEEEccc
Confidence            873332211  256 6788887666544   34455679999999884  356799999999886   567899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||.+++.   ++|+++|+++|+++++|+++. +..-..+.         ....-.+++.|.+|.+|++|  +|+++  
T Consensus       149 n~tG~~~~~---~~I~~l~~~~~~~~ivD~a~~-~g~~~~~~---------~~~~~D~~~~s~~K~~gp~g--~g~l~--  211 (353)
T TIGR03235       149 NETGSIQPI---REIAEVLEAHEAFFHVDAAQV-VGKITVDL---------SADRIDLISCSGHKIYGPKG--IGALV--  211 (353)
T ss_pred             CCceeccCH---HHHHHHHHHcCCEEEEEchhh-cCCccccc---------cccCCCEEEeehhhcCCCCc--eEEEE--
Confidence            999999885   577777999999999999944 22111111         11123466778899988777  68886  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHhh------ccCc-cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKRL------ARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  392 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~  392 (467)
                      ..++ ....        ..  +...      .+.. ...++.....++..++.   +   +.+.+++..++++++++.+.
T Consensus       212 ~~~~-~~~~--------~~--~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~---~---~~~~~~~~~~~~~~l~~~l~  274 (353)
T TIGR03235       212 IRKR-GKPK--------AP--LKPIMFGGGQERGLRPGTLPVHLIVGMGEAAE---I---ARRNAQAWEVKLRAMRNQLR  274 (353)
T ss_pred             EccC-cccc--------cc--cCceeeCCCCcCccccCCCChHHHHHHHHHHH---H---HHhhHHHHHHHHHHHHHHHH
Confidence            2333 2211        00  1000      0001 11222222223333332   1   12346778899999999999


Q ss_pred             HHhhhccCCCCCcccccCC----cceE--EecCCCHHHHHHHHHcccEEEeCC
Q 012238          393 DSLSAKDKSGKDWSFILRQ----IGMF--SFTGLNKAQSDNMTNKWHVYMTKD  439 (467)
Q Consensus       393 ~~l~~~~g~~~~~~~~~~~----~g~f--~~~~l~~~~~~~ll~~~gI~v~~g  439 (467)
                      +.|+ +.|    ++...+.    .++.  ...+.+.+.+...|++ +|.+.+|
T Consensus       275 ~~l~-~~g----~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~L~~-~i~v~~g  321 (353)
T TIGR03235       275 DALQ-TLG----VKLNGDPAETIPHILNFSIDGVNSEALIVNLRA-DAAVSTG  321 (353)
T ss_pred             HHhc-cCC----eEEeCCcccccCCEEEEEeCCcCHHHHHHHHhC-CeEEEch
Confidence            9998 766    3443221    2222  2235666777766666 8999987

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.86  E-value=5.2e-19  Score=176.82  Aligned_cols=216  Identities=16%  Similarity=0.158  Sum_probs=151.5

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcc----hHHHHhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN----HKNIFNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~----~~~~~~~~G~  199 (467)
                      +..-..+|++.+++++..        +.+++  +++|++++.++  +...+.+||+|+++.+.|..    +...++..|+
T Consensus        52 ~~p~~~~le~~la~l~g~--------~~~~~--~~sG~~Ai~~a--l~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~  119 (380)
T TIGR01325        52 ANPTVAAFEERIAALEGA--------ERAVA--TATGMSAIQAA--LMTLLQAGDHVVASRSLFGSTVGFISEILPRFGI  119 (380)
T ss_pred             CCchHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCC
Confidence            445578999999998643        25566  89999999987  45557799999999998864    3445677899


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++.       .|++.+++.++   +++++|++++|+||+|.+.+.   ++|.++|+++|+++|+|++|....... 
T Consensus       120 ~v~~v~~-------~d~~~l~~~i~---~~tklV~le~p~np~g~~~dl---~~I~~la~~~gi~livD~a~~~~~~~~-  185 (380)
T TIGR01325       120 EVSFVDP-------TDLNAWEAAVK---PNTKLVFVETPSNPLGELVDI---AALAELAHAIGALLVVDNVFATPVLQQ-  185 (380)
T ss_pred             EEEEECC-------CCHHHHHHhcC---CCceEEEEECCCCCCCeeeCH---HHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            8888865       27888888886   567899999999999998875   577777999999999999987554321 


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARI  359 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  359 (467)
                           ++    +.+ ..+++.|+||.++.+|.++|.++  +.++++++.            ++..........+...+.+
T Consensus       186 -----pl----~~g-~Divv~S~sK~l~g~g~~~gG~v--v~~~~~~~~------------l~~~~~~~g~~~~p~~a~~  241 (380)
T TIGR01325       186 -----PL----KLG-ADVVVYSATKHIDGQGRVMGGVI--AGSEELMAE------------VAVYLRHTGPAMSPFNAWV  241 (380)
T ss_pred             -----ch----hhC-CCEEEeeccceecCCCCeEEEEE--EeCHHHHHH------------HHHHHHhhCCCCCHHHHHH
Confidence                 11    112 35778899999998899885543  367777776            3333332233334333333


Q ss_pred             HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          360 VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       360 ~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      +   +..-       +.+..+.++..+++..+.+.|+ +.+
T Consensus       242 ~---l~~l-------~tl~~r~~~~~~~a~~la~~L~-~~p  271 (380)
T TIGR01325       242 L---LKGL-------ETLSLRMQKQFDSALAIAEWLQ-AQP  271 (380)
T ss_pred             H---Hhcc-------CcHHHHHHHHHHHHHHHHHHHH-cCC
Confidence            2   2221       2244556667777888888887 654

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.86  E-value=9.4e-19  Score=176.94  Aligned_cols=338  Identities=10%  Similarity=0.017  Sum_probs=198.1

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +.+.|||..|..-..-|  +.+|.|.+++.+.++... ...........++++.++++. +       .+.+++  +++|
T Consensus        30 g~~~lD~~~~~~~~~~G--h~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-------~~~~~~--~~SG   97 (400)
T PTZ00125         30 GKKYYDFLSAYSAVNQG--HCHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDLF-G-------YDKVLP--MNSG   97 (400)
T ss_pred             CCEEEEcccCHhhccCC--cCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhCC-C-------CCEEEE--eCCc
Confidence            34789998774311111  236778888888764321 111111223445555555542 1       247777  8999


Q ss_pred             hhHHHHHHHHHHHh--------CCCCEEEEcCCCCcchHHH-HhhCCCCeEE---eeeecC--CCCCCChhhHHHHHHcC
Q 012238          161 TGSLRLAAALIERY--------FPGAKVLISSPTWGNHKNI-FNDARVPWSE---YRYYDP--KTVGLDFEGMIADIKAA  226 (467)
Q Consensus       161 t~al~l~~~~l~~~--------~~gd~Vlv~~P~y~~~~~~-~~~~G~~~~~---v~~~~~--~~~~~d~~~l~~~l~~~  226 (467)
                      ++|...+..+....        ..+++|++.+-+|...... +...+.....   .+....  .-...|++.+++.++. 
T Consensus        98 s~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-  176 (400)
T PTZ00125         98 AEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQD-  176 (400)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCC-
Confidence            99999985443221        1347899888888655332 2222211100   010000  0011489999998862 


Q ss_pred             CCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC
Q 012238          227 PGGSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (467)
Q Consensus       227 ~~~~~~i~i~~p~NPTG~~~~-~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (467)
                       ++++++++.+++||||.+++ .+.+++|.++|++||+++|+||+|.++...+   ..+.. ......++++   ++||.
T Consensus       177 -~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G---~~~~~-~~~~~~pd~~---~~sK~  248 (400)
T PTZ00125        177 -PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTG---KLLAH-DHEGVKPDIV---LLGKA  248 (400)
T ss_pred             -CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---hhhHH-HhcCCCCCEE---EEccc
Confidence             56788888889999999986 4569999999999999999999998775432   11111 1111122333   36899


Q ss_pred             cccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238          306 LGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  385 (467)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~  385 (467)
                      ++..++|+||++   .++++++.            +.......+.+.+.+.+.++...|+.-  .    +  ....++.+
T Consensus       249 l~~g~~~ig~v~---~~~~~~~~------------~~~~~~~~t~~~~~~~~~aa~~~l~~i--~----~--~~~~~~~~  305 (400)
T PTZ00125        249 LSGGLYPISAVL---ANDDVMLV------------IKPGEHGSTYGGNPLACAVAVEALEVL--K----E--EKLAENAQ  305 (400)
T ss_pred             ccCCCcCcEEEE---EcHHHHhh------------ccCCCCCCCCCcCHHHHHHHHHHHHHH--H----h--cCHHHHHH
Confidence            985446999995   67777776            443323333445666677665554311  0    0  01233444


Q ss_pred             HHHHHHHHHhhhcc-CCCCCcccccCCcceEEecCC------C-HHHHHHHHHcccEEEeCCC----eEEec-cCChhhH
Q 012238          386 NVRQKLFDSLSAKD-KSGKDWSFILRQIGMFSFTGL------N-KAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKC  452 (467)
Q Consensus       386 ~~r~~l~~~l~~~~-g~~~~~~~~~~~~g~f~~~~l------~-~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~~~i  452 (467)
                      ++.+.+.+.|+ ++ +....+....+. |.+.|+.+      + .++.+++++ +||.+.|++    ||+.. ..+++++
T Consensus       306 ~~~~~l~~~l~-~l~~~~~~~~~~~~~-g~~~~v~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~lRi~~~~~~~~~~i  382 (400)
T PTZ00125        306 RLGEVFRDGLK-ELLKKSPWVKEIRGK-GLLNAIVFDHSDGVNAWDLCLKLKE-NGLLAKPTHDNIIRFAPPLVITKEQL  382 (400)
T ss_pred             HHHHHHHHHHH-HHHhcCCCeEEEecc-cEEEEEEEccCcchHHHHHHHHHHH-CCeEEeecCCCEEEEECCccCCHHHH
Confidence            45555555555 43 110112223343 44544422      1 234566664 699999875    88853 3488999


Q ss_pred             HHHHHHHHHHHHhc
Q 012238          453 EYLADAIIDSYHNV  466 (467)
Q Consensus       453 ~~~~~~l~~~l~~~  466 (467)
                      ++++++|.++++++
T Consensus       383 ~~~l~~l~~~l~~~  396 (400)
T PTZ00125        383 DQALEIIKKVLKSF  396 (400)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998764

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.85  E-value=4.6e-19  Score=176.80  Aligned_cols=216  Identities=19%  Similarity=0.128  Sum_probs=153.7

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~  199 (467)
                      +.....+|++.++++...        +..++  +++|++|+.++  +...+.+||+|+++.++|.....    .++..|+
T Consensus        38 ~~p~~~~le~~la~l~g~--------~~a~~--~~sG~~Ai~~~--l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~  105 (369)
T cd00614          38 GNPTVDALEKKLAALEGG--------EAALA--FSSGMAAISTV--LLALLKAGDHVVASDDLYGGTYRLFERLLPKLGI  105 (369)
T ss_pred             CChhHHHHHHHHHHHHCC--------CCEEE--EcCHHHHHHHH--HHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCe
Confidence            556688999999999643        24555  68899999998  45557799999999999987554    3456788


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      ++..++.       .|++.+++.++   ++++++++.+|+||||.+.+.   ++|+++|+++|+++|+|++|......  
T Consensus       106 ~~~~v~~-------~d~~~l~~~i~---~~~~~v~~e~~~np~g~~~dl---~~i~~la~~~g~~livD~t~~~~~~~--  170 (369)
T cd00614         106 EVTFVDP-------DDPEALEAAIK---PETKLVYVESPTNPTLKVVDI---EAIAELAHEHGALLVVDNTFATPYLQ--  170 (369)
T ss_pred             EEEEeCC-------CCHHHHHHhcC---CCCeEEEEECCCCCCCeecCH---HHHHHHHHHcCCEEEEECCCcchhcC--
Confidence            8877765       25888888886   467899999999999998875   57777899999999999998654431  


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                        .  ++    +. ...+++.|+||.++.+| .+.||++  +.+++++++            ++..........+...+.
T Consensus       171 --~--~~----~~-g~Divv~S~tK~l~g~~~~~gG~v~--~~~~~l~~~------------l~~~~~~~g~~~~p~~a~  227 (369)
T cd00614         171 --R--PL----EL-GADIVVHSATKYIGGHSDVIAGVVV--GSGEALIQR------------LRFLRLALGTILSPFDAW  227 (369)
T ss_pred             --C--hh----hh-CCcEEEeccceeccCCCCceEEEEE--eCcHHHHHH------------HHHHHHhhCCCCCHHHHH
Confidence              1  11    11 24588999999998776 7889885  344477776            443333333345555545


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      ++...|+.          +..+.++..++...+.+.|+ +.+
T Consensus       228 ~~l~~l~t----------l~~r~~~~~~na~~la~~L~-~~~  258 (369)
T cd00614         228 LLLRGLKT----------LPLRMERHSENALKVAEFLE-KHP  258 (369)
T ss_pred             HHHcCCCC----------HHHHHHHHHHHHHHHHHHHH-cCC
Confidence            44434432          33455666777788888887 654

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PLN00144 acetylornithine transaminase

Probab=99.85  E-value=8.5e-19  Score=175.30  Aligned_cols=336  Identities=14%  Similarity=0.023  Sum_probs=200.8

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +...||+..|.--..-|.  -.|.+.+++.+.++... + +.. ....+....+|+.+....+    .+++.+  +++|+
T Consensus        14 G~~ylD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~~-~-~~~-~~~~~~~~~la~~l~~~~~----~~~v~f--~~sGs   82 (382)
T PLN00144         14 GKEYLDMAAGIAVNALGH--GDPDWVKAVAEQAGTLA-H-VSN-VYHTIPQVELAKRLVASSF----ADRVFF--CNSGT   82 (382)
T ss_pred             CCEEEECCcCHHhccCCC--CCHHHHHHHHHHHHhcC-C-ccc-cccCHHHHHHHHHHHhcCC----CCeEEE--eCCcH
Confidence            347899987743111232  36788888888775421 1 111 1112233445555443211    358888  99999


Q ss_pred             hHHHHHHHHHHHhCC-------------CCEEEEcCCCCcchHHHHhhCCCCe-E---EeeeecCCC--CCCChhhHHHH
Q 012238          162 GSLRLAAALIERYFP-------------GAKVLISSPTWGNHKNIFNDARVPW-S---EYRYYDPKT--VGLDFEGMIAD  222 (467)
Q Consensus       162 ~al~l~~~~l~~~~~-------------gd~Vlv~~P~y~~~~~~~~~~G~~~-~---~v~~~~~~~--~~~d~~~l~~~  222 (467)
                      +|.+.+.++......             ..+|+....+|.+............ .   ..|..+...  .-.|++.+++.
T Consensus        83 eA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~  162 (382)
T PLN00144         83 EANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKL  162 (382)
T ss_pred             HHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHh
Confidence            999998655433321             2479999988876643332221111 0   001000000  01378889888


Q ss_pred             HHcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEec
Q 012238          223 IKAAPGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (467)
Q Consensus       223 l~~~~~~~~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  301 (467)
                      +..  .+..++++..-+||.|... +.+.+++|.++|++||+++|+||+|.+|...+   ..++. ......++   +.+
T Consensus       163 ~~~--~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g---~~~~~-~~~~~~PD---i~t  233 (382)
T PLN00144        163 IQK--GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTG---YLWAH-EAYGVEPD---IMT  233 (382)
T ss_pred             cCC--CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hHhhh-hhcCCCCC---EEE
Confidence            753  3444555555599944432 34459999999999999999999999886532   11111 12222233   778


Q ss_pred             CccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHH---HhCChhhHHHHHHHHH
Q 012238          302 YSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVAN---VVGNPALFDEWKAEME  378 (467)
Q Consensus       302 ~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~L~~~~~~~~~~~~l~  378 (467)
                      |||.++ +|+|+||++   .++++.+.            +.......+.+.+.+.+.++.+   ++.++.+    .++++
T Consensus       234 ~sK~l~-~G~pig~v~---~~~~~~~~------------~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~----~~~~~  293 (382)
T PLN00144        234 LAKPLA-GGLPIGAVL---VTEKVASA------------INPGDHGSTFAGGPLVCNAALAVLDKISKPGF----LASVA  293 (382)
T ss_pred             eccccc-CCcceEEEE---EcHHHHhc------------cCCCCCCCCCCCCHHHHHHHHHHHHHHhhchH----HHHHH
Confidence            899998 899999995   77777776            4432233344566677777773   4443332    33344


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC---CHHHHHHHHHcccEEEeCCC-----eEEecc-CCh
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG-----RISLAG-LSL  449 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg-----Ris~~~-~~~  449 (467)
                      .+.+.+   ++.+.+.+. +.+.   +..+. ..|+++|+.+   ...+...+++ +||.+.+++     ||+++. +++
T Consensus       294 ~~g~~l---~~~l~~~~~-~~~~---~~~vr-g~G~~~~l~l~~~~~~~~~~~~~-~Gv~i~~~~~~~~lrl~p~~~~~~  364 (382)
T PLN00144        294 KKGEYL---RELLRRKLG-GNPH---VKEVR-GVGLLVGIQLDVPAGPLVDACRD-SGLLVLTAGKGDVVRLVPPLVISE  364 (382)
T ss_pred             HHHHHH---HHHHHHHHh-hCCC---ceeee-cCceEEEEEecCccHHHHHHHHH-CCeEEeecCCCCEEEEeCCCccCH
Confidence            454444   344444444 4421   11122 3788888865   2344555554 699998864     898887 688


Q ss_pred             hhHHHHHHHHHHHHHhc
Q 012238          450 AKCEYLADAIIDSYHNV  466 (467)
Q Consensus       450 ~~i~~~~~~l~~~l~~~  466 (467)
                      ++++.++++|.+++.++
T Consensus       365 ~~i~~~~~~l~~~l~~~  381 (382)
T PLN00144        365 AELEQAVEILADCLPAL  381 (382)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999998764

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.85  E-value=6.3e-19  Score=175.49  Aligned_cols=213  Identities=11%  Similarity=0.049  Sum_probs=150.6

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~  199 (467)
                      +......|++++|++..        .+++++  ++||++++.++  +...+.+||+|+++.|+|......    ....|+
T Consensus        51 ~npt~~~Le~~lA~leg--------~e~ivv--t~gg~~Ai~~~--l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi  118 (388)
T PRK08861         51 GNPNRGLLEQTLSELES--------GKGAVV--TNCGTSALNLW--VSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDF  118 (388)
T ss_pred             CCchHHHHHHHHHHHhC--------CCeEEE--ECCHHHHHHHH--HHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCe
Confidence            55668899999999954        358888  99999999998  455578999999999999854332    234566


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++.       .|++.+++.++   ++++++++++|+||||.+++.+   +|+++|+++|+++|+|++|....... 
T Consensus       119 ~v~~vd~-------~d~e~l~~~i~---~~tklV~lesP~NPtG~v~dl~---~I~~la~~~gi~vIvDea~~~~~~~~-  184 (388)
T PRK08861        119 KVQFVDQ-------SDAAALDAALA---KKPKLILLETPSNPLVRVVDIA---ELCQKAKAVGALVAVDNTFLTPVLQK-  184 (388)
T ss_pred             EEEEECC-------CCHHHHHHhcC---cCCeEEEEECCCCCCCcccCHH---HHHHHHHHcCCEEEEECCccccccCC-
Confidence            6666642       58899988886   5788999999999999999966   66777999999999999987544321 


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccC-CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLY-AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                           ++    +.+ -.+++.|++|.++-+ +.+.|+++  +.++++.++            ++..........++....
T Consensus       185 -----pl----~~G-aDivv~S~tK~l~G~~d~~gG~i~--~~~~~~~~~------------~~~~~~~~G~~~~p~~a~  240 (388)
T PRK08861        185 -----PL----ELG-ADFVIHSTTKYINGHSDVIGGVLI--TKTKEHAEE------------LAWWGNCIGATGTPFDSY  240 (388)
T ss_pred             -----Cc----ccC-CCEEEeecceeccCCCcceeEEEE--ecHHHHHHH------------HHHHHhccCCCCChHHHH
Confidence                 11    112 348899999998754 46778875  456666665            444444444455566655


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      .+..-|+.          +..+.++..++...+.+.|+
T Consensus       241 l~~rgl~T----------l~lR~~~~~~~a~~~a~~L~  268 (388)
T PRK08861        241 MTLRGIRT----------LGARMRVHEESAQQILAYLQ  268 (388)
T ss_pred             HHHhcCCC----------HHHHHHHHHHHHHHHHHHHH
Confidence            55444443          33444555556666777776

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.85  E-value=1.1e-18  Score=174.78  Aligned_cols=213  Identities=14%  Similarity=0.093  Sum_probs=148.7

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~  199 (467)
                      +.....+|++.++++..        .+++++  ++||++|+.++  +...+.+||+|+++.|+|..+..    .++..|+
T Consensus        63 ~~pt~~~Le~~lA~l~g--------~~~~l~--~~sgt~Ai~~~--l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi  130 (394)
T PRK07050         63 ATPTSLALAQRLAEIEG--------GRHALL--QPSGLAAISLV--YFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGI  130 (394)
T ss_pred             CCHHHHHHHHHHHHHhC--------CCeEEE--eccHHHHHHHH--HHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCe
Confidence            56667899999999853        247888  99999999998  45557899999999999998664    4567898


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++.       .+.+.+++.++   +++++|++++|+||+|.   ..++++|+++|+++|+++|+|++|.....-  
T Consensus       131 ~v~~vd~-------~~~~~l~~~i~---~~tklV~le~p~Np~~~---~~di~~I~~ia~~~gi~livD~a~a~~~~~--  195 (394)
T PRK07050        131 TVRFYDP-------LIGAGIADLIQ---PNTRLIWLEAPGSVTME---VPDVPAITAAARARGVVTAIDNTYSAGLAF--  195 (394)
T ss_pred             EEEEECC-------CCHHHHHHhcC---CCCeEEEEECCCCCCcc---HhhHHHHHHHHHHcCCEEEEECCccccccc--
Confidence            8887754       13467777776   67889999999999974   677889999999999999999998653321  


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCccc-CCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                        .  +.    .. ...+++.|++|.++- .+.+.|+++  +.+++++++            ++........+.++....
T Consensus       196 --~--~l----~~-GaDi~v~S~tK~~~g~~~~~gG~v~--~~~~~~~~~------------~~~~~~~~G~~~~~~~a~  252 (394)
T PRK07050        196 --K--PF----EH-GVDISVQALTKYQSGGSDVLMGATI--TADAELHAK------------LKLARMRLGIGVSADDCS  252 (394)
T ss_pred             --C--HH----Hc-CCeEEEEECCceecCCCCeeEEEEE--ECCHHHHHH------------HHHHHHhcCCCCCHHHHH
Confidence              1  11    11 236889999999962 334578875  678887777            443333334455555544


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      .+...|.+          +..+.++..++...+.+.|+
T Consensus       253 l~lr~l~t----------l~~Rl~~~~~~a~~la~~L~  280 (394)
T PRK07050        253 LVLRGLPS----------LQVRLAAHDRSALEVAEWLK  280 (394)
T ss_pred             HHHcCCCc----------HHHHHHHHHHHHHHHHHHHH
Confidence            44333332          22233334444445666665

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.85  E-value=8.8e-19  Score=175.96  Aligned_cols=213  Identities=9%  Similarity=0.024  Sum_probs=149.0

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCC----cchHHHHhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTW----GNHKNIFNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y----~~~~~~~~~~G~  199 (467)
                      +.....+|++.+|++...        ++.++  +++|+.|+..+  +...+.+||+|+++...|    ..+...++..|+
T Consensus        68 ~~p~~~~le~~lA~l~g~--------~~al~--~~sG~~Ai~~~--l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~  135 (403)
T PRK07810         68 GNPTVSMFEERLRLIEGA--------EACFA--TASGMSAVFTA--LGALLGAGDRLVAARSLFGSCFVVCNEILPRWGV  135 (403)
T ss_pred             CCchHHHHHHHHHHHhCC--------CcEEE--ECChHHHHHHH--HHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCc
Confidence            555688999999999643        25555  69999999887  455678999999988555    445566778899


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++.       .|++.++++++   +++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....... 
T Consensus       136 ~v~~vd~-------~d~~~l~~ai~---~~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~~-  201 (403)
T PRK07810        136 ETVFVDG-------EDLSQWEEALS---VPTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFATPLLQR-  201 (403)
T ss_pred             EEEEECC-------CCHHHHHHhcC---cCceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCccccCC-
Confidence            9988864       48899999887   57889999999999999886   5577777999999999999987554321 


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHh-hhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAA-RCCEVAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                           ++    +. ...+++.|++|.++.+|+++|.++  +.+++.+. .            ++...+.....++...+.
T Consensus       202 -----~~----~~-gaDivv~S~tK~l~g~g~~~gG~v--~~~~~~~~~~------------l~~~~~~~g~~~s~~~a~  257 (403)
T PRK07810        202 -----GL----PL-GADVVVYSGTKHIDGQGRVLGGAI--LGDREYIDGP------------VQKLMRHTGPALSAFNAW  257 (403)
T ss_pred             -----hh----hc-CCcEEEccCCceecCCcCceeEEE--EeChHHHHHH------------HHHHHHHhCCCCCHHHHH
Confidence                 11    11 235789999999998999984443  24554443 3            222222233456666655


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      ++...|+.          +..+.++..++...+.+.|+
T Consensus       258 l~l~~L~t----------l~~R~~~~~~~a~~~a~~L~  285 (403)
T PRK07810        258 VLLKGLET----------LALRVRHSNASALRIAEFLE  285 (403)
T ss_pred             HHHhccCc----------HHHHHHHHHHHHHHHHHHHh
Confidence            55444432          34445555555666666776

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.85  E-value=1.3e-18  Score=173.93  Aligned_cols=213  Identities=16%  Similarity=0.113  Sum_probs=146.7

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh---hCCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN---DARVP  200 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~---~~G~~  200 (467)
                      ......+|++.+|+++..        +++++  +++|+.|+.++  +...+.+||+|+++.|+|..+...++   ..|++
T Consensus        51 ~np~~~~lE~~lA~l~g~--------~~~l~--~~sG~~Ai~~~--l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~  118 (385)
T PRK08574         51 ENPTLRPLEEALAKLEGG--------VDALA--FNSGMAAISTL--FFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVK  118 (385)
T ss_pred             CCccHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcE
Confidence            345688999999999643        35666  79999999987  55567899999999999998877664   45665


Q ss_pred             eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012238          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (467)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~  280 (467)
                      ++.++        +|++.+++.+++  .+++++++++|+||||.+++.+   +|+++|+++|+++|+|++|......   
T Consensus       119 v~~~~--------~d~~~l~~~i~~--~~tklV~ie~p~NPtG~v~dl~---~I~~la~~~gi~livD~t~a~~~~~---  182 (385)
T PRK08574        119 VVLAY--------PSTEDIIEAIKE--GRTKLVFIETMTNPTLKVIDVP---EVAKAAKELGAILVVDNTFATPLLY---  182 (385)
T ss_pred             EEEEC--------CCHHHHHHhcCc--cCceEEEEECCCCCCCEecCHH---HHHHHHHHcCCEEEEECCCCccccC---
Confidence            55432        467889888872  2788999999999999999855   7788899999999999997533211   


Q ss_pred             CChhHHHHHHhcCCeEEEEecCccCcccCCCcc-ceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHH
Q 012238          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARI  359 (467)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  359 (467)
                       .  ++    .. ...+++.|+||.++.+|..+ |+++  +.++++.++            ++..........+.+....
T Consensus       183 -~--~l----~~-GaDivv~S~sK~l~g~~d~~gG~vi--~~~~~~~~~------------~~~~~~~~g~~~~p~~a~l  240 (385)
T PRK08574        183 -R--PL----RH-GADFVVHSLTKYIAGHNDVVGGVAV--AWSGEFLEE------------LWEWRRRLGTIMQPFEAYL  240 (385)
T ss_pred             -C--hh----hh-CCcEEEeeCceeecCCCCceeEEEE--ECcHHHHHH------------HHHHHHhcCCCCCHHHHHH
Confidence             1  11    11 24688999999998788776 5454  577777776            3333332233444444333


Q ss_pred             HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          360 VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       360 ~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      +...|..          +..+.++..++...+.+.|+
T Consensus       241 ~l~~l~t----------L~~R~~~~~~na~~la~~L~  267 (385)
T PRK08574        241 VLRGLKT----------LEVRFERQCRNAMAIAEFLS  267 (385)
T ss_pred             HHcccCc----------HHHHHHHHHHHHHHHHHHHH
Confidence            3333322          33344445556666677776

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.84  E-value=3.3e-18  Score=171.17  Aligned_cols=188  Identities=16%  Similarity=0.080  Sum_probs=138.6

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-hCCCCEEE
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKVL  181 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~~~gd~Vl  181 (467)
                      .+.-.+++.+.+..+. . | +.....+|++++|+++...        ++++  ++|||+|+.++  +... +.+||+|+
T Consensus        13 ~~~e~~~~~~~l~~~~-~-~-~g~~~~~le~~la~~~g~~--------~~v~--~~sgt~al~la--l~al~~~~Gd~Vi   77 (379)
T PRK11658         13 GDEELAAVKEVLRSGW-I-T-TGPKNQALEQAFCQLTGNQ--------HAIA--VSSATAGMHIT--LMALGIGPGDEVI   77 (379)
T ss_pred             CHHHHHHHHHHHHcCC-c-c-CCHhHHHHHHHHHHHhCCC--------eEEE--ECCHHHHHHHH--HHHcCCCCCCEEE
Confidence            4556777777775543 2 2 3346899999999997542        4666  79999999998  4444 56999999


Q ss_pred             EcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc
Q 012238          182 ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK  261 (467)
Q Consensus       182 v~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~  261 (467)
                      ++.|+|..+...+...|++++.++++ .+++.+|++.+++.++   +++++++   |+||+|...+.   ++|.++|+++
T Consensus        78 v~~~~~~~~~~~~~~~G~~~v~vd~~-~~~~~~d~~~l~~~i~---~~tkav~---~~~~~G~~~d~---~~i~~~a~~~  147 (379)
T PRK11658         78 TPSLTWVSTLNMIVLLGATPVMVDVD-RDTLMVTPEAIEAAIT---PRTKAII---PVHYAGAPADL---DAIRAIGERY  147 (379)
T ss_pred             ECCCcHHHHHHHHHHcCCEEEEEecC-CCcCCcCHHHHHHhcc---cCCeEEE---EeCCCCCcCCH---HHHHHHHHHc
Confidence            99999999999999999999999984 4557799999999987   4677776   56789997765   5777779999


Q ss_pred             CCeeEEeccCCC-CCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhh
Q 012238          262 NHIPFFDVAYQG-FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       262 ~~~li~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                      |+++|+|+++.. ..+.+.  .   +   -..+.   .+.||++...+++.+.|+++  +.++++.++
T Consensus       148 gi~vi~D~a~a~g~~~~~~--~---~---g~~g~---~~~Sf~~~K~l~~g~GG~v~--~~~~~~~~~  202 (379)
T PRK11658        148 GIPVIEDAAHAVGTYYKGR--H---I---GARGT---AIFSFHAIKNITCAEGGLVV--TDDDELADR  202 (379)
T ss_pred             CCeEEEECCCccCCeECCe--e---c---CCCCC---EEEeCCCCCcCcccCceEEE--ECCHHHHHH
Confidence            999999999763 333211  0   1   01122   45666665556777788874  677888776

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.84  E-value=1.1e-18  Score=173.02  Aligned_cols=277  Identities=16%  Similarity=0.142  Sum_probs=178.4

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEE
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSE  203 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~  203 (467)
                      +.+...+|++++|++..        .+++++  ++||++|+.++  + ..+.+||+|+++.+.|..-...+.....+. .
T Consensus        52 ~~p~~~~le~~lA~leg--------~~~~v~--~~sG~aAi~~~--l-~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~-~  117 (364)
T PRK07269         52 KNPTRAKLEETLAAIES--------ADYALA--TSSGMSAIVLA--F-SVFPVGSKVVAVRDLYGGSFRWFNQQEKEG-R  117 (364)
T ss_pred             CCccHHHHHHHHHHHhC--------CCeEEE--eCCHHHHHHHH--H-HHhCCCCEEEEecCCcCchHHHHHHHHhcC-c
Confidence            55678899999999963        347877  89999999987  3 456899999999999976555433221110 1


Q ss_pred             eeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCCh
Q 012238          204 YRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (467)
Q Consensus       204 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~  283 (467)
                      +..    .+..|++.++++++   +++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.......     
T Consensus       118 ~~~----~~~~d~~~l~~~i~---~~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~~~-----  182 (364)
T PRK07269        118 FHF----TYANTEEELIAAIE---EDTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIYQR-----  182 (364)
T ss_pred             EEE----EecCCHHHHHHhcC---cCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccCC-----
Confidence            111    23468999999887   57889999999999998775   5577777999999999999975432221     


Q ss_pred             hHHHHHHhcCCeEEEEecCccCcccCCCc-cceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHH
Q 012238          284 SSVRLFATRGMELLVAQSYSKNLGLYAER-IGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVAN  362 (467)
Q Consensus       284 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~R-iG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  362 (467)
                       ++    .. .-.+++.|++|.++-+|-= .||++  +.++++.++            ++..........+.+...++..
T Consensus       183 -pl----~~-gaDivv~S~tK~l~g~~d~~gG~v~--~~~~~l~~~------------~~~~~~~~G~~~s~~~a~l~~~  242 (364)
T PRK07269        183 -PI----EL-GADIVLHSATKYLSGHNDVLAGVVV--TNDLELYEK------------LFYNLNTTGAVLSPFDSYLLMR  242 (364)
T ss_pred             -ch----hh-CCcEEEecCceeccCCCcccceEEE--eCcHHHHHH------------HHHHHHHhCCCCCHHHHHHHHc
Confidence             11    11 2348899999999755532 35653  567777776            3322222233455555555544


Q ss_pred             HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHc-----------
Q 012238          363 VVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNK-----------  431 (467)
Q Consensus       363 ~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~-----------  431 (467)
                      .|+.          +..+.++.+++...+.+.|+ ..+.- ..-++++.||++.|.-.+.+.+.++++.           
T Consensus       243 ~L~t----------L~~r~~~~~~na~~~a~~L~-~~p~v-~~v~ypg~gg~~sf~~~~~~~~~~f~~~l~~~~~~~slG  310 (364)
T PRK07269        243 GLKT----------LSLRMERSTANAQEVVAFLK-KSPAV-KEVLYTGKGGMISFKVADETRIPHILNSLKVFTFAESLG  310 (364)
T ss_pred             CCCc----------HHHHHHHHHHHHHHHHHHHH-hCCCc-cEEeCCCcCcEEEEEECCHHHHHHHHHhCCcceEccCCC
Confidence            4433          44566666777777888887 54310 1223477888876652233333333322           


Q ss_pred             --ccEEEeCC---------------C------eEEeccCChhhHHHHHHHHHHHHH
Q 012238          432 --WHVYMTKD---------------G------RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       432 --~gI~v~~g---------------g------Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                        ..+.+.|.               |      |||++-   |+.+.+++-|.++++
T Consensus       311 ~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvGl---E~~~dli~dl~~al~  363 (364)
T PRK07269        311 GVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGI---EDARDLIADLKQALE  363 (364)
T ss_pred             CcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHhc
Confidence              12232231               1      999997   567777777777664

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.84  E-value=2.8e-18  Score=174.23  Aligned_cols=334  Identities=14%  Similarity=0.058  Sum_probs=209.5

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.+|+..|.+-..-|.  .+|.|.+++.+.++... ..|.+..+..+|.+.+++.+..       .+++++  +++|+
T Consensus        49 G~~~lD~~~g~~~~~lGh--~~p~i~~a~~~~~~~~~-~~~~~~~~~~~la~~L~~~~~~-------~~~v~~--~~sGs  116 (426)
T PRK00062         49 GNEYIDYVGSWGPMILGH--AHPEVVEAVIEAAEKGL-SFGAPTELEVELAELVIELVPS-------IEMVRM--VNSGT  116 (426)
T ss_pred             CCEEEEcccchhhhhcCC--CCHHHHHHHHHHHHhCC-cCCCCCHHHHHHHHHHHHhCCC-------CCEEEE--ecCHH
Confidence            458999998865222233  36788888888886643 4455667777888888877421       357888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhC-C------------CCeE-----EeeeecCCCCCCChhhHHHHH
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-R------------VPWS-----EYRYYDPKTVGLDFEGMIADI  223 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~-G------------~~~~-----~v~~~~~~~~~~d~~~l~~~l  223 (467)
                      +|++.+.++......+++|+...++|.++...+... |            ....     .+..  +   -.|++.+++.+
T Consensus       117 eA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~d~~~l~~~i  191 (426)
T PRK00062        117 EATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTA--P---YNDLEAVEELF  191 (426)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEc--C---CCCHHHHHHHH
Confidence            999998655444445679999999999876433221 1            0000     0111  1   13788998888


Q ss_pred             HcCCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecC
Q 012238          224 KAAPGGSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY  302 (467)
Q Consensus       224 ~~~~~~~~~i~i~~p~NPTG~~~~-~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  302 (467)
                      +..+.+..++++.....-+|.+.+ .+.+++|.++|++||+++|+||+|.++..+.    .... ......++   +.+|
T Consensus       192 ~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~----~~~~-~~~~~~pD---i~~~  263 (426)
T PRK00062        192 EEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVAL----GGAQ-GYYGVTPD---LTTL  263 (426)
T ss_pred             HhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCC----ccHH-HHhCCCcc---hHhh
Confidence            654445666666644444788876 7889999999999999999999998885432    1112 11121223   3588


Q ss_pred             ccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHh---hccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238          303 SKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKR---LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM  379 (467)
Q Consensus       303 SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~  379 (467)
                      ||.++ .|+++|+++   .++++++.            +..   .....+.+.+.+.+.++...|+.-  .+  ++..++
T Consensus       264 gK~l~-~G~p~ga~~---~~~~i~~~------------~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~--~~--~~~~~~  323 (426)
T PRK00062        264 GKIIG-GGLPVGAFG---GRREIMEQ------------LAPLGPVYQAGTLSGNPLAMAAGLATLKLL--KE--PGFYEE  323 (426)
T ss_pred             hhHhh-CCCcceeee---EHHHHHHh------------hccCCCceecccCcCCHHHHHHHHHHHHHH--hc--chHHHH
Confidence            99999 899999984   67777776            431   112223345566666666555311  00  012334


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEe-cCC------------C----HHHHHHHHHcccEEEeCCC--
Q 012238          380 MAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF-TGL------------N----KAQSDNMTNKWHVYMTKDG--  440 (467)
Q Consensus       380 ~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~-~~l------------~----~~~~~~ll~~~gI~v~~gg--  440 (467)
                      .++.....++.|.+.++ +.+..   ....+.|.++.+ +..            +    ..+...+++ +||++.+.+  
T Consensus       324 ~~~~~~~~~~~l~~~~~-~~~~~---~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~-~Gv~v~~~~~~  398 (426)
T PRK00062        324 LEALTKRLAEGLKEAAK-KAGIP---LTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLD-EGVYLAPSQFE  398 (426)
T ss_pred             HHHHHHHHHHHHHHHHH-HcCCc---eEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHH-CCeEeecCCcC
Confidence            44444444555555544 45531   113355665532 211            1    133445554 699998865  


Q ss_pred             --eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          441 --RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 --Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                        ++++.. +++++++++++|+++++.+
T Consensus       399 ~~~~~~~~-t~~ei~~~~~~l~~~l~~~  425 (426)
T PRK00062        399 AGFVSAAH-TDEDIEKTLEAARKAFAAL  425 (426)
T ss_pred             ceeeeccC-CHHHHHHHHHHHHHHHHhh
Confidence              777544 8999999999999998764

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.84  E-value=3.7e-18  Score=171.99  Aligned_cols=329  Identities=15%  Similarity=0.107  Sum_probs=201.1

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.|||..|..-+.-|.  -.|.|.+++.+.++...  ...| +..-..+|.+.++++. .       .+.+.+  +++
T Consensus        34 G~~ylD~~~g~~~~~lGh--~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~la~~L~~~~-~-------~~~~~f--~~S  100 (397)
T TIGR03246        34 GKEYIDFAGGIAVNALGH--AHPELVKALIEQADKLWHIGNGY-TNEPVLRLAKKLVDAT-F-------ADKVFF--CNS  100 (397)
T ss_pred             CCEEEECCcCHhhccCCC--CCHHHHHHHHHHHHhcccccCcc-CCHHHHHHHHHHHhhC-C-------CCEEEE--eCC
Confidence            458999988743223344  36888888888775421  1122 2222345556666552 1       257888  999


Q ss_pred             chhHHHHHHHHHHHhC------CCCEEEEcCCCCcchH-HHHhhCCCC------------eEEeeeecCCCCCCChhhHH
Q 012238          160 GTGSLRLAAALIERYF------PGAKVLISSPTWGNHK-NIFNDARVP------------WSEYRYYDPKTVGLDFEGMI  220 (467)
Q Consensus       160 gt~al~l~~~~l~~~~------~gd~Vlv~~P~y~~~~-~~~~~~G~~------------~~~v~~~~~~~~~~d~~~l~  220 (467)
                      |++|...+.++.....      ..++|+..+-+|.... ..+...|..            +..++.       .|++.++
T Consensus       101 GseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~  173 (397)
T TIGR03246       101 GAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY-------NDLAAAK  173 (397)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC-------CCHHHHH
Confidence            9999999866554332      2357888888886653 233333321            111211       4889999


Q ss_pred             HHHHcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012238          221 ADIKAAPGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (467)
Q Consensus       221 ~~l~~~~~~~~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (467)
                      +.+.   +++.++++...+++.|... +.+.+++|.++|++||+++|+||+|.++...+   ..+....+ .-.+++   
T Consensus       174 ~~l~---~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G---~~~a~~~~-gv~pDi---  243 (397)
T TIGR03246       174 ALIS---DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTG---ELYAYMHY-GVTPDI---  243 (397)
T ss_pred             HHhc---cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccc---cchhhhhc-CCCCCE---
Confidence            8886   4677777776555566543 88999999999999999999999998874332   11111111 112232   


Q ss_pred             ecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM  379 (467)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~  379 (467)
                      -++||.++ .|+++||++   .++++++.            +.......+.+.+.+++.++...|+..      +  -++
T Consensus       244 ~t~~K~lg-gG~pigav~---~~~~i~~~------------~~~~~~~~t~~~~p~~~aaa~a~l~~~------~--~~~  299 (397)
T TIGR03246       244 LTSAKALG-GGFPIGAML---TTTEIAAH------------LKVGTHGTTYGGNPLACAVAGKVLDLV------N--TPE  299 (397)
T ss_pred             EEeehhhh-CCcceeEEE---EcHHHHHh------------ccCCCcCCCCCCCHHHHHHHHHHHHHH------h--hcc
Confidence            37899998 899999995   67777776            433222223344556666666555421      1  124


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCC-cccccCCcceEEe-c-C----CCHHHHHHHHHcccEEEeCCC----eEEec-cC
Q 012238          380 MAGRIKNVRQKLFDSLSAKDKSGKD-WSFILRQIGMFSF-T-G----LNKAQSDNMTNKWHVYMTKDG----RISLA-GL  447 (467)
Q Consensus       380 ~~~~~~~~r~~l~~~l~~~~g~~~~-~~~~~~~~g~f~~-~-~----l~~~~~~~ll~~~gI~v~~gg----Ris~~-~~  447 (467)
                      ..++++++.+++.+.|+ +++.... +......|.++.+ + +    ....+++.+++ +||++.+.|    |++.+ ..
T Consensus       300 l~~~~~~~~~~l~~~L~-~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~-~Gv~~~~~g~~~lR~~p~~~~  377 (397)
T TIGR03246       300 LLAGVKQRHDLFVDGLE-KINARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAAE-EGVIALIAGPNVVRFAPSLVI  377 (397)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHhcCCCeEeeecCceEEEEEEcCchhhHHHHHHHHHHH-CCeEEeecCCCEEEEeCCCCC
Confidence            56777788888888887 6541100 2223334443322 1 1    12344556665 599987654    77432 23


Q ss_pred             ChhhHHHHHHHHHHHHHhc
Q 012238          448 SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       448 ~~~~i~~~~~~l~~~l~~~  466 (467)
                      +++++++++++|.+++.++
T Consensus       378 t~~~i~~~~~~l~~~l~~~  396 (397)
T TIGR03246       378 SDDDIDEGLARFERAIEQV  396 (397)
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            8899999999999998764

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.83  E-value=5e-18  Score=168.91  Aligned_cols=218  Identities=13%  Similarity=0.083  Sum_probs=151.3

Q ss_pred             CcCCC--CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH---
Q 012238          120 KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF---  194 (467)
Q Consensus       120 ~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~---  194 (467)
                      ..|..  ..+..+|++++|++..+        +++++  +.||++|+..+  +.+.+.+||+|++++|.|..+...+   
T Consensus        53 ~~Y~r~~npt~~~Le~~iA~le~~--------~~~~~--~~sG~~Ai~~~--l~all~~GD~Vvv~~~~Y~~t~~l~~~~  120 (394)
T PRK09028         53 MFYGRRGTPTHFAFQAAIVELEGG--------AGTAL--YPSGAAAISNA--LLSFLKAGDHLLMVDSCYEPTRDLCDKI  120 (394)
T ss_pred             ceecCCCCchHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEECCCcHHHHHHHHHh
Confidence            45655  34567999999999533        35677  89999999987  5566889999999999997776533   


Q ss_pred             -hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC
Q 012238          195 -NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (467)
Q Consensus       195 -~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~  273 (467)
                       ...|+++..++.       .|.+.+++.++   ++++++++++|+||||.+   .++++|+++|+++|+++|+|++|..
T Consensus       121 l~~~Gi~v~~v~~-------~~~e~l~~~l~---~~TklV~lespsNPtg~v---~dl~~I~~la~~~g~~lvvD~t~a~  187 (394)
T PRK09028        121 LKGFGIETTYYDP-------MIGEGIRELIR---PNTKVLFLESPGSITMEV---QDVPTLSRIAHEHDIVVMLDNTWAS  187 (394)
T ss_pred             hhhcceEEEEECC-------CCHHHHHHhcC---cCceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCccc
Confidence             457777766543       24577888776   678999999999999875   6678999999999999999999875


Q ss_pred             CCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC-CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCC
Q 012238          274 FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY-AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNP  352 (467)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  352 (467)
                      ...-    .  ++    +. .-.+++.|.+|.++-+ +...|++   +.++++.+.            +...........
T Consensus       188 p~~~----~--Pl----~~-GaDivv~S~tK~l~Gh~d~~~G~~---~~~~~~~~~------------l~~~~~~~G~~~  241 (394)
T PRK09028        188 PINS----R--PF----EM-GVDISIQAATKYIVGHSDVMLGTA---TANEKHWDQ------------LREHSYLMGQCT  241 (394)
T ss_pred             cccC----C--cc----cc-CceEEEEeCCeEecCCCCEEEEEE---ECCHHHHHH------------HHHHHHhcCCCC
Confidence            3211    1  11    11 2468899999999545 4545654   366666555            333323334455


Q ss_pred             chHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          353 PVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       353 ~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                      ++.....+..-|..          +..+.++..++...+.+.|+ +.
T Consensus       242 ~p~~a~l~~rgl~T----------L~lR~~~~~~na~~la~~L~-~~  277 (394)
T PRK09028        242 SPDDVYLAMRGLRT----------LGVRLAQHEKNALKVANWLA-TR  277 (394)
T ss_pred             CHHHHHHHHcccCc----------HHHHHHHHHHHHHHHHHHHh-cC
Confidence            65555554444433          44555666677777888887 54

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.83  E-value=3.2e-18  Score=170.61  Aligned_cols=190  Identities=15%  Similarity=0.085  Sum_probs=135.8

Q ss_pred             chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-hCCCCEE
Q 012238          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKV  180 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~~~gd~V  180 (467)
                      ..+..++++.+.+..+...+.  ..-..++.+.+++++    +    .+++++  |+||++++.++  +... +.|||+|
T Consensus         9 ~~~~e~~a~~~~~~~~~~~~~--g~~~~~~e~~la~~~----g----~~~~v~--~~sgt~aL~~~--l~al~~~pGd~V   74 (376)
T TIGR02379         9 VTGQELEYIAEAISEGKLSGD--GPFSRRCETWLENRT----G----TKKALL--TPSCTAALEMA--ALLLDIQPGDEV   74 (376)
T ss_pred             CCHHHHHHHHHHHHcCCccCC--cHHHHHHHHHHHHHh----C----CCeEEE--eCCHHHHHHHH--HHHcCCCCcCEE
Confidence            356667788887765432111  112345555565553    1    457888  99999999987  3433 5699999


Q ss_pred             EEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q 012238          181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE  260 (467)
Q Consensus       181 lv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~  260 (467)
                      ++++|+|..+...+...|++++.++++ ++++.+|++.+++.++   +++++++   |+||||...+.+   +|.++|++
T Consensus        75 iv~~~t~~~~~~~~~~~G~~~v~vd~d-~~~~~~d~~~le~~i~---~~tk~Ii---p~~~~G~~~d~~---~I~~la~~  144 (376)
T TIGR02379        75 IMPSYTFVSTANAFVLRGAKIVFVDIR-PDTMNIDETLIESAIT---HRTKAIV---PVHYAGVACDMD---TIMALANK  144 (376)
T ss_pred             EECCCCcHHHHHHHHHcCCEEEEEecC-CCcCCCCHHHHHHhcC---cCceEEE---EeCCCCCccCHH---HHHHHHHH
Confidence            999999999999999999999999995 4557899999999887   4677776   578999987755   77777999


Q ss_pred             cCCeeEEeccCCCCC-CCCCCCChhHHHHHHhcCCeEEEEecC--ccCcccCCCccceEEEecCCHHHHhh
Q 012238          261 KNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       261 ~~~~li~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                      +|++||+|+++.... +++.     .+   ...+  .+.+.||  +|.+. +|.+.|+++  +.++++.++
T Consensus       145 ~~i~vIeDaa~~~g~~~~~~-----~~---g~~~--~~~~fSf~~~K~l~-~g~~gG~v~--~~~~~~~~~  202 (376)
T TIGR02379       145 HQLFVIEDAAQGVMSTYKGR-----AL---GSIG--HLGTFSFHETKNYT-SGGEGGALL--INDQAFIER  202 (376)
T ss_pred             CCCEEEEECccccCCccCCc-----cc---CCCC--CEEEEeCCCCCcCc-ccCCceEEE--ECCHHHHHH
Confidence            999999999977654 3221     11   0011  1223332  48886 787889985  688888887

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.83  E-value=7.5e-18  Score=168.35  Aligned_cols=325  Identities=13%  Similarity=0.050  Sum_probs=191.9

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC-----CCCcCC----CCcchHHHHHHHHHHHhCCCCcccccCcee
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-----ENKEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVA  153 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~-----~~~~Y~----~~~G~~~lr~aia~~l~~~~~~~~~~~~i~  153 (467)
                      .+.+||+...|++.+..|.+.+.+.+++.+.....     ...+..    ...-+.++|+.+|++++..       +.++
T Consensus         4 ~~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~-------~~l~   76 (370)
T PRK05937          4 SLSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAP-------EAFI   76 (370)
T ss_pred             CceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCC-------eEEE
Confidence            36899999999988877776777887777763210     011111    2345789999999997542       2355


Q ss_pred             eeecCCchhHHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC---CC
Q 012238          154 TVQGLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP---GG  229 (467)
Q Consensus       154 ~~~t~ggt~al~l~~~~l~~~-~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~  229 (467)
                      +  +.|. .++..   +...+ .+||.|++..-.+......++......+.++       ..|++.+++.++...   +.
T Consensus        77 ~--~sG~-~a~~~---~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~-------~~d~~~l~~~l~~~~~~~~~  143 (370)
T PRK05937         77 V--PSGY-MANLG---LCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFR-------HNDLDHLESLLESCRQRSFG  143 (370)
T ss_pred             E--CChH-HHHHH---HHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEec-------CCCHHHHHHHHHhhhccCCC
Confidence            5  5555 44432   23333 4677777666666666666665443333332       268999999887431   34


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC
Q 012238          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (467)
                      +.++++++++|+||.+.+.+   +|.++|+++|+++++||+|.....+ .  +...........+..+++.||||.+|..
T Consensus       144 ~~~v~v~~v~s~~G~i~pl~---eI~~l~~~~~~~livDea~~~G~~g-~--~g~g~~~~~~~~~~~~~~~tlsK~~g~~  217 (370)
T PRK05937        144 RIFIFVCSVYSFKGTLAPLE---QIIALSKKYHAHLIVDEAHAMGIFG-D--DGKGFCHSLGYENFYAVLVTYSKALGSM  217 (370)
T ss_pred             cEEEEEecCCCCCCCccCHH---HHHHHHHHcCCEEEEECCccccccC-C--CCCchHHhhCCCCCcEEEEechhhhhcC
Confidence            56777899999999999955   6667799999999999998643332 1  1111111111112236789999999977


Q ss_pred             CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc-cC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012238          310 AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM-YS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  387 (467)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~  387 (467)
                      |.  |.+    ..++....            +.....+. +. +.+.....++..+++   +.   .+..+..++++++.
T Consensus       218 G~--~vl----~~~~~~~~------------~~~~~~~~~~s~~~~~~~~~a~~aal~---~l---~~~~~~~~~~l~~l  273 (370)
T PRK05937        218 GA--ALL----SSSEVKQD------------LMLNSPPLRYSTGLPPHLLISIQVAYD---FL---SQEGELARKQLFRL  273 (370)
T ss_pred             ce--EEE----cCHHHHHH------------HHHhCCCCeecCCCCHHHHHHHHHHHH---HH---HhCcHHHHHHHHHH
Confidence            73  333    44554444            22111111 11 233333333323321   10   11123455677777


Q ss_pred             HHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCC-----C--eEEeccC-ChhhHHHHHHHH
Q 012238          388 RQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKD-----G--RISLAGL-SLAKCEYLADAI  459 (467)
Q Consensus       388 r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~g-----g--Ris~~~~-~~~~i~~~~~~l  459 (467)
                      ++++.+.|. ..+. +   ..    ..+.+.+...+.+.+.++++||.+...     +  |||++.. +++++++++++|
T Consensus       274 ~~~l~~~l~-~~~~-~---~~----~~i~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L  344 (370)
T PRK05937        274 KEYFAQKFS-SAAP-G---CV----QPIFLPGISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVL  344 (370)
T ss_pred             HHHHHHhcC-CCCC-C---CE----EEEEeCChhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            888877776 4321 0   00    112222334445555566679988632     3  9998643 779999999999


Q ss_pred             HHHHHhc
Q 012238          460 IDSYHNV  466 (467)
Q Consensus       460 ~~~l~~~  466 (467)
                      +++++++
T Consensus       345 ~~~~~~~  351 (370)
T PRK05937        345 ATYLEKY  351 (370)
T ss_pred             HHHHHHh
Confidence            9988754

>PLN02651 cysteine desulfurase

Probab=99.83  E-value=1.6e-18  Score=172.93  Aligned_cols=296  Identities=15%  Similarity=0.060  Sum_probs=180.4

Q ss_pred             cCCCCCCCCchHHHHHHHHHHHhcCCCCc------CCC--CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHH
Q 012238           93 YRTEELQPYVLDVVKKAENLMLERGENKE------YLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (467)
Q Consensus        93 ~~d~~~~p~~~~~v~~a~~~~~~~~~~~~------Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al  164 (467)
                      |+|.++..++++.+.+++.+.+.......      +..  ..-..++|+.++++++..      +++|++  |.|+++++
T Consensus         2 Yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~------~~~v~~--t~~~t~a~   73 (364)
T PLN02651          2 YLDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGAD------PKEIIF--TSGATESN   73 (364)
T ss_pred             cccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCC------CCeEEE--eCCHHHHH
Confidence            45555666668899999988763211000      101  122567888888886543      678988  99999998


Q ss_pred             HHHHHHHHH--hCCCCEEEEcCCCCcchHH---HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          165 RLAAALIER--YFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       165 ~l~~~~l~~--~~~gd~Vlv~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +++...+..  ..+||+|++....|+.+..   .++..|++++.++.+  .++.+|++.+++.++   ++++++++++++
T Consensus        74 ~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~---~~t~lv~v~~~~  148 (364)
T PLN02651         74 NLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVK--SDGLVDLDELAAAIR---PDTALVSVMAVN  148 (364)
T ss_pred             HHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccC--CCCcCCHHHHHHhcC---CCcEEEEEECCC
Confidence            886333211  3579999999977765433   334678899999883  456789999999997   568899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||...+.+   +|.++|+++|+++++|.++. +.....+.+         ..+-.+++.|..|.+|++|  +|+++  
T Consensus       149 n~tG~~~~l~---~I~~~~~~~g~~~~vD~a~~-~g~~~~~~~---------~~~~D~~~~s~hK~~gp~G--~g~l~--  211 (364)
T PLN02651        149 NEIGVIQPVE---EIGELCREKKVLFHTDAAQA-VGKIPVDVD---------DLGVDLMSISGHKIYGPKG--VGALY--  211 (364)
T ss_pred             CCceecccHH---HHHHHHHHcCCEEEEEcchh-hCCcccCcc---------cCCCCEEEechhhhCCCCc--eEEEE--
Confidence            9999998865   77777999999999999954 322111111         1123577888889766555  58775  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHh--hccCc-cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKR--LARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      ..+ +....        +...+..  ..... ...++..+..++..+|+.      +.+..+++.++.++.++++.+.|+
T Consensus       212 v~~-~~~~~--------l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~------~~~~~~~i~~~~~~l~~~l~~~l~  276 (364)
T PLN02651        212 VRR-RPRVR--------LEPLMSGGGQERGRRSGTENTPLVVGLGAACEL------AMKEMDYDEKHMKALRERLLNGLR  276 (364)
T ss_pred             EcC-CCCCC--------CCccccCCCccCCccCCCccHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHH
Confidence            233 22222        0000000  00001 112333333333333321      122346677888888888888887


Q ss_pred             hccCCCCCcccccC---C---cceE--EecCCCHHHHHHHHHcccEEEeC
Q 012238          397 AKDKSGKDWSFILR---Q---IGMF--SFTGLNKAQSDNMTNKWHVYMTK  438 (467)
Q Consensus       397 ~~~g~~~~~~~~~~---~---~g~f--~~~~l~~~~~~~ll~~~gI~v~~  438 (467)
                       +. +++ ++.+.+   .   .+..  .+.+.+.+.+...|++  |.+..
T Consensus       277 -~~-~~~-~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~--i~v~~  321 (364)
T PLN02651        277 -AK-LGG-VRVNGPRDPEKRYPGTLNLSFAYVEGESLLMGLKE--VAVSS  321 (364)
T ss_pred             -hh-CCC-EEEECCCCcccCcCCEEEEEeCCCCHHHHHHHhCC--EEEEc
Confidence             42 111 344332   1   2233  3346666665555554  77653

>PRK07505 hypothetical protein; Provisional

Probab=99.83  E-value=5.6e-18  Score=171.21  Aligned_cols=323  Identities=11%  Similarity=0.063  Sum_probs=184.7

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-C-CCCcC----CCCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-G-ENKEY----LPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~-~~~~Y----~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (467)
                      +...+||+...+   -+. .-.|.|.+++.+.+.. + .....    .......++++.+++++..        +.+++ 
T Consensus        45 g~~~ld~~s~~~---lgl-~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~--------~~~~~-  111 (402)
T PRK07505         45 GHTFVNFVSCSY---LGL-DTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA--------SVLTF-  111 (402)
T ss_pred             CceEEEeecCCc---cCC-CCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC--------CEEEE-
Confidence            347899976544   132 3367788888887753 1 11111    1233456778888877421        23434 


Q ss_pred             ecCCchhHHHHHHHHHHH-hCC-CC-EEEEcCCCCcchH---HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCC
Q 012238          156 QGLSGTGSLRLAAALIER-YFP-GA-KVLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~~-~~~-gd-~Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (467)
                        ++|+++...+..+... ..+ |+ .|++.+..|..-.   ......+.+++.+|.       .|++.+++.++   ++
T Consensus       112 --~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~~~---~~  179 (402)
T PRK07505        112 --TSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDH-------NDLDALEDICK---TN  179 (402)
T ss_pred             --CChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC-------CCHHHHHHHHh---cC
Confidence              5666777765333321 223 33 4667776554321   111223456666654       48899999886   34


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEecCccCccc
Q 012238          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGL  308 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~  308 (467)
                      ++++++++|+||||.+.+.   ++|.++|+++|+++|+||+|....++.. ........+.. ..+++++++|+||.+++
T Consensus       180 ~~~~vl~~p~~~~G~~~~~---~~i~~l~~~~~~~li~DEa~~~~~~g~~-g~~~~~~~~~~~~~d~~i~~~s~sK~~~~  255 (402)
T PRK07505        180 KTVAYVADGVYSMGGIAPV---KELLRLQEKYGLFLYIDDAHGLSIYGKN-GEGYVRSELDYRLNERTIIAASLGKAFGA  255 (402)
T ss_pred             CCEEEEEecccccCCcCCH---HHHHHHHHHcCCEEEEECcccccCcCCC-CCchHHHHcCCCCCCCeEEEEechhhhhc
Confidence            5688889999999999995   5666779999999999999754443321 11112212221 35678999999999997


Q ss_pred             CCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc-cC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012238          309 YAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM-YS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  386 (467)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~  386 (467)
                      +|   ||++  ++++++++.            +.....+. ++ +++..+..++...++-  ..   ++.+.+..+++++
T Consensus       256 ~G---g~~~--~~~~~~~~~------------~~~~~~~~t~~~~~~~~a~aa~~a~l~~--~~---~~~~~~~~~~l~~  313 (402)
T PRK07505        256 SG---GVIM--LGDAEQIEL------------ILRYAGPLAFSQSLNVAALGAILASAEI--HL---SEELDQLQQKLQN  313 (402)
T ss_pred             cC---eEEE--eCCHHHHHH------------HHHhCCCceeCCCCCHHHHHHHHHHHHH--Hh---ccCcHHHHHHHHH
Confidence            76   8874  467777776            54443332 22 3444454554444320  00   1112334444544


Q ss_pred             HHHHHHHHhhhccCCCCCcccccCCcceEEec--CC---CHHHHHHHHHcccEEEeCC-------C----eEEecc-CCh
Q 012238          387 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT--GL---NKAQSDNMTNKWHVYMTKD-------G----RISLAG-LSL  449 (467)
Q Consensus       387 ~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~--~l---~~~~~~~ll~~~gI~v~~g-------g----Ris~~~-~~~  449 (467)
                      +...+.+.+. ..        ....+.++.++  +-   ..++.++|++ +||.+.++       |    ||+++. .++
T Consensus       314 ~~~~~~~~~~-~~--------~~g~~~~i~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~  383 (402)
T PRK07505        314 NIALFDSLIP-TE--------QSGSFLPIRLIYIGDEDTAIKAAKQLLD-RGFYTSPVFFPVVAKGRAGLRIMFRASHTN  383 (402)
T ss_pred             HHHHHHHHHH-hc--------CCCCCCCEEEEEeCCHHHHHHHHHHHHH-CCCeEeeecCCCCCCCCceEEEecCccCCH
Confidence            4443332222 10        01111111122  21   2344566665 59999763       2    888763 388


Q ss_pred             hhHHHHHHHHHHHHHh
Q 012238          450 AKCEYLADAIIDSYHN  465 (467)
Q Consensus       450 ~~i~~~~~~l~~~l~~  465 (467)
                      +++++++++|++++++
T Consensus       384 eei~~~~~~l~~~l~~  399 (402)
T PRK07505        384 DEIKRLCSLLKEILDE  399 (402)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998864

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.83  E-value=1.2e-17  Score=169.04  Aligned_cols=342  Identities=9%  Similarity=0.019  Sum_probs=196.4

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +...||+..|.--..-|.  -.|.+.+++.+.++......+..  ...+....+|+.+...... ...+++++  +++|+
T Consensus        39 G~~ylD~~~g~~~~~lGh--~~p~v~~ai~~ql~~~~~~~~~~--~~~~~~~~la~~l~~~~p~-~~~~~~~f--~~sGs  111 (421)
T PRK09792         39 GNEYIDFAAGIAVLNTGH--RHPDLVAAVEQQLQQFTHTAYQI--VPYESYVTLAEKINALAPV-SGQAKTAF--FTTGA  111 (421)
T ss_pred             CCEEEEccCchhhhcCCC--CCHHHHHHHHHHHHhccCcccCc--cCCHHHHHHHHHHHHhCCC-CCCceEEE--eCChH
Confidence            457899977743112232  36778888888775422122210  1112223344443322100 01247777  89999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-hhCCC-------------CeEEeeeecCCCCCC----ChhhHHHHH
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDARV-------------PWSEYRYYDPKTVGL----DFEGMIADI  223 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~-~~~G~-------------~~~~v~~~~~~~~~~----d~~~l~~~l  223 (467)
                      +|.+.+.++........+|+....+|.+..... ...|.             .+..+|+..+. .++    +++.+++.+
T Consensus       112 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~~~~~~l~~~~  190 (421)
T PRK09792        112 EAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQDSLDAIERLF  190 (421)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccc-ccccHHHHHHHHHHHH
Confidence            999998665444433358899998887653221 11111             12223331111 112    346777777


Q ss_pred             Hc--CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEe
Q 012238          224 KA--APGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (467)
Q Consensus       224 ~~--~~~~~~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  300 (467)
                      ++  .+.+..++++...++|+|..+ +.+.+++|.++|++||+++|+||+|.+|...+   ..+....+ ...++   +.
T Consensus       191 ~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G---~~~a~~~~-~~~pD---i~  263 (421)
T PRK09792        191 KSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTG---KLFAMDHY-ADKPD---LM  263 (421)
T ss_pred             HhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC---chhHHHhc-CCCCc---EE
Confidence            63  124556667777799999865 89999999999999999999999999986542   22333222 11223   57


Q ss_pred             cCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHH
Q 012238          301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMM  380 (467)
Q Consensus       301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~  380 (467)
                      +|||.++ +|+|+||++   .++++.+.            +.......+.+.+.+++.++...++-  +.+  .+.+++.
T Consensus       264 t~gK~l~-~G~pigav~---~~~~i~~~------------~~~~~~~~T~~gnpl~~aaa~a~l~~--l~~--~~~~~~~  323 (421)
T PRK09792        264 TMAKSLA-GGMPLSGVV---GNANIMDA------------PAPGGLGGTYAGNPLAVAAAHAVLNI--IDK--ESLCERA  323 (421)
T ss_pred             Eeehhhc-CCCceEEEE---EcHHHHhc------------cCCCCcCCCCCCCHHHHHHHHHHHHH--HHh--hhHHHHH
Confidence            8999999 899999985   77777776            33222223445666677755544421  100  1112222


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCcccccCCc-ceEEecCCC------------HHHHHHHHHcccEEEeCCC------e
Q 012238          381 AGRIKNVRQKLFDSLSAKDKSGKDWSFILRQI-GMFSFTGLN------------KAQSDNMTNKWHVYMTKDG------R  441 (467)
Q Consensus       381 ~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~-g~f~~~~l~------------~~~~~~ll~~~gI~v~~gg------R  441 (467)
                      + .+.++.....+.+.++++.     +....| |+++|+.+.            ..+...+++ +||.+.+.|      |
T Consensus       324 ~-~~g~~l~~~l~~l~~~~p~-----v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~-~Gv~i~~~g~~~~~ir  396 (421)
T PRK09792        324 N-QLGQRLKNTLIDAKESVPA-----IAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALA-QGLLLLTCGAYGNVIR  396 (421)
T ss_pred             H-HHHHHHHHHHHHHHHhCCC-----cceecccceEEEEEecCCccCCcchHHHHHHHHHHHH-CCcEEeecCCCCCEEE
Confidence            2 2222222222222213331     233445 778877541            123445555 699986532      7


Q ss_pred             EEecc-CChhhHHHHHHHHHHHHHh
Q 012238          442 ISLAG-LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       442 is~~~-~~~~~i~~~~~~l~~~l~~  465 (467)
                      |.++. ++++++++++++|.+++++
T Consensus       397 l~P~l~i~~~ei~~~~~~l~~~l~~  421 (421)
T PRK09792        397 FLYPLTIPDAQFDAAMKILQDALSD  421 (421)
T ss_pred             EeCCCcCCHHHHHHHHHHHHHHHhC
Confidence            87665 6899999999999998853

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.83  E-value=1.5e-17  Score=168.69  Aligned_cols=339  Identities=11%  Similarity=0.027  Sum_probs=194.6

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcC--CCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y--~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.||+..|.--..-|.  -.|.|.+++.+.++......+  .+..-..++-+.+++..-..     ..+++++  +++
T Consensus        32 G~~ylD~~~g~~~~~lGh--~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~-----~~~~v~f--~~s  102 (420)
T TIGR00700        32 GNRLIDFASGIAVLNIGH--SHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGS-----GPKKSVF--FNS  102 (420)
T ss_pred             CCEEEECccCHHhccCCC--CCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCC-----CCCEEEE--eCC
Confidence            457899988753112232  367888888887754322222  12222234444444442111     1257888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CC--------C-----CeEEeeeecCCCC-----CC----Ch
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-AR--------V-----PWSEYRYYDPKTV-----GL----DF  216 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~-~G--------~-----~~~~v~~~~~~~~-----~~----d~  216 (467)
                      |++|.+.+.++........+|+...-+|.+....... .|        .     .+..++..+....     ..    ++
T Consensus       103 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (420)
T TIGR00700       103 GAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGEL  182 (420)
T ss_pred             cHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHH
Confidence            9999999866654444446788888888765432221 11        1     1122222100000     01    24


Q ss_pred             hhHHHHHH--cCCCCcEEEEeCCCCCCCCCCCCH-HHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012238          217 EGMIADIK--AAPGGSFILLHGCAHNPTGIDPTP-EQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (467)
Q Consensus       217 ~~l~~~l~--~~~~~~~~i~i~~p~NPTG~~~~~-~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (467)
                      +.+++.+.  ..++....+++-.-+.-+|..++. +.+++|.++|++||+++|+||+|.+|...+   ..+....+ ...
T Consensus       183 ~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g---~~~a~~~~-~~~  258 (420)
T TIGR00700       183 AAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTG---AMFACEHE-GPE  258 (420)
T ss_pred             HHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc---hhHHHhhc-CCC
Confidence            56666653  223566677777667777886655 459999999999999999999999986542   12222111 112


Q ss_pred             CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhC---ChhhH
Q 012238          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVG---NPALF  370 (467)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~---~~~~~  370 (467)
                      ++   +.+|||.++ +|+|+||++   .++++++.            +.......+.+.+.+++.++.+.|+   ++.+ 
T Consensus       259 pD---i~~lsK~l~-~G~pig~v~---~~~~i~~~------------~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~-  318 (420)
T TIGR00700       259 PD---LITTAKSLA-DGLPLSGVT---GRAEIMDA------------PAPGGLGGTYAGNPLACAAALAVLAIIESEGL-  318 (420)
T ss_pred             CC---EEEeecccc-CCcceEEEE---ecHHHHhh------------cCCCCcCCCCCcCHHHHHHHHHHHHHHHhccH-
Confidence            23   345999999 999999995   77877776            4332333344566777777765553   2211 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC--------CHHHHHHH---HHcccEEEeCC
Q 012238          371 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--------NKAQSDNM---TNKWHVYMTKD  439 (467)
Q Consensus       371 ~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--------~~~~~~~l---l~~~gI~v~~g  439 (467)
                         .+.++++.+++   ++.+.+... .++.   +..+.+. |.+.|+.+        +.++...+   +.++||.+.|+
T Consensus       319 ---~~~~~~~g~~l---~~~L~~l~~-~~~~---~~~vrg~-G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~  387 (420)
T TIGR00700       319 ---IERARQIGRLV---TDRLTTLKA-VDPR---IGDVRGL-GAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTC  387 (420)
T ss_pred             ---HHHHHHHHHHH---HHHHHHHHh-hCCC---EEEeecc-ceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEecc
Confidence               22233333333   222322222 3321   2334455 44555422        12222222   24569999986


Q ss_pred             C------eEEecc-CChhhHHHHHHHHHHHHH
Q 012238          440 G------RISLAG-LSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       440 g------Ris~~~-~~~~~i~~~~~~l~~~l~  464 (467)
                      +      ||+++. ++++++++++++|.++++
T Consensus       388 ~~f~~~lRl~p~l~~~~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       388 GMFGNIIRFLPPLTIGDELLSEGLDILCAILA  419 (420)
T ss_pred             CCCCCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence            3      888764 588999999999999875

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PLN02624 ornithine-delta-aminotransferase

Probab=99.83  E-value=2.4e-17  Score=169.05  Aligned_cols=333  Identities=12%  Similarity=0.067  Sum_probs=201.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC-CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~-~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +.+.|||..|.--...|.  -.|.|.+++.+.++.... ..+.......+|.+.++++. +       .+.+++  +++|
T Consensus        74 G~~ylD~~sg~~~~~~Gh--~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~-~-------~~~~~f--~~SG  141 (474)
T PLN02624         74 GKKYLDFLSAYSAVNQGH--CHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMF-G-------YDMVLP--MNTG  141 (474)
T ss_pred             CCEEEEcccchhcccCCC--CCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhc-C-------CCeEEE--eCCh
Confidence            357899987743111222  267888888887754211 11123344566777777763 1       247888  8999


Q ss_pred             hhHHHHHHHHHHHhC-------CCC-EEEEcCCCCcchHHHHhhCCCC-------------eEEeeeecCCCCCCChhhH
Q 012238          161 TGSLRLAAALIERYF-------PGA-KVLISSPTWGNHKNIFNDARVP-------------WSEYRYYDPKTVGLDFEGM  219 (467)
Q Consensus       161 t~al~l~~~~l~~~~-------~gd-~Vlv~~P~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~~d~~~l  219 (467)
                      ++|.+.+..+.....       ++. +|+...-+|.+.....-.....             +..++.       .|++.+
T Consensus       142 seA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l  214 (474)
T PLN02624        142 AEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-------GDLDAL  214 (474)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-------CCHHHH
Confidence            999999866544321       133 5777777776553222111111             111221       378899


Q ss_pred             HHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238          220 IADIKAAPGGSFILLHGCAHNPTGIDPTPEQ-WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (467)
Q Consensus       220 ~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~-l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (467)
                      ++.++..+.+..++++..++||+|.++++++ +++|.++|++||+++|+||+|.++...+   ..+.. ......+++++
T Consensus       215 ~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG---~~~a~-~~~~i~pDiv~  290 (474)
T PLN02624        215 EKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTG---KMLAC-DWEEVRPDVVI  290 (474)
T ss_pred             HHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCc---chhhH-HhcCCCCCEEE
Confidence            9988765567888999999999999988774 9999999999999999999998775432   11111 11122233333


Q ss_pred             EecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                         +||.++..++++|+++   .++++++.            +.......+.+.+.+.+.++...|+.  +.+      .
T Consensus       291 ---lsK~lggG~~pigav~---~~~~i~~~------------~~~~~~~~T~~g~pl~~aaa~aaLe~--l~~------~  344 (474)
T PLN02624        291 ---LGKALGGGVIPVSAVL---ADKDVMLC------------IKPGEHGSTFGGNPLASAVAMAALQV--VQD------E  344 (474)
T ss_pred             ---ecccccCCCCcceeee---ecHHHHhH------------hccCCcCCCCCCCHHHHHHHHHHHHH--HHh------c
Confidence               6899997779999995   66666665            43333223335566677777666531  111      0


Q ss_pred             HHHHHHHHHHHHHHHHhhhccC--CCCCcccccCCcceEE-ecCCC-------HHHHHHHHHcccEEEeCCC----eEEe
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFS-FTGLN-------KAQSDNMTNKWHVYMTKDG----RISL  444 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g--~~~~~~~~~~~~g~f~-~~~l~-------~~~~~~ll~~~gI~v~~gg----Ris~  444 (467)
                      ...++..++.+.+.+.|+ ++.  .+..+....+.|.++. +++.+       .++++.+ .++||++.+++    ||+.
T Consensus       345 ~l~~~~~~~~~~l~~~L~-~l~~~~~~~i~~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L-~e~GV~v~p~~~~~lR~~p  422 (474)
T PLN02624        345 KLAERSAKLGQELRDQLQ-KIQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVSAYDVCLKL-KERGLLAKPTHDTIIRLAP  422 (474)
T ss_pred             hHHHHHHHHHHHHHHHHH-HHHHhCCCceEEEEeeEEEEEEEecCCCcChHHHHHHHHHH-HhCCeEEecCCCCEEEEEC
Confidence            122333344444444444 321  1111233445565553 33321       2345555 45799999875    7774


Q ss_pred             c-cCChhhHHHHHHHHHHHHHh
Q 012238          445 A-GLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       445 ~-~~~~~~i~~~~~~l~~~l~~  465 (467)
                      . ..+++++++++++|++++++
T Consensus       423 ~l~~t~e~id~~l~~L~~~l~~  444 (474)
T PLN02624        423 PLSISEDELQECSKALSDVLEH  444 (474)
T ss_pred             CccCCHHHHHHHHHHHHHHHHH
Confidence            2 34889999999999998764

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.82  E-value=2.9e-17  Score=166.01  Aligned_cols=331  Identities=9%  Similarity=0.050  Sum_probs=205.6

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +.+.|||..|..--..|  +..|.|.+++.+.++... ........-..++.+.+++++ +       .+.+++  +++|
T Consensus        36 g~~~lD~~s~~~~~~~G--h~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-------~~~~~~--~~SG  103 (401)
T TIGR01885        36 GKRYLDFLSAYSAVNQG--HCHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLF-G-------YDKVLP--MNTG  103 (401)
T ss_pred             CCEEEEcccCHhhccCC--CCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhc-C-------CCEEEE--eCcc
Confidence            35789998873311112  236788888887764311 111112334566777777764 2       247777  8999


Q ss_pred             hhHHHHHHHHHHHh-------CCC-CEEEEcCCCCcch-HHHHhhCCC------------CeEEeeeecCCCCCCChhhH
Q 012238          161 TGSLRLAAALIERY-------FPG-AKVLISSPTWGNH-KNIFNDARV------------PWSEYRYYDPKTVGLDFEGM  219 (467)
Q Consensus       161 t~al~l~~~~l~~~-------~~g-d~Vlv~~P~y~~~-~~~~~~~G~------------~~~~v~~~~~~~~~~d~~~l  219 (467)
                      ++|...+..+....       .+| ++|+...-+|... ...+...|-            .+..++.       .|++.+
T Consensus       104 s~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l  176 (401)
T TIGR01885       104 AEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY-------NNLEAL  176 (401)
T ss_pred             HHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC-------CCHHHH
Confidence            99999985543322       233 5677777777643 333333221            1222222       378999


Q ss_pred             HHHHHcCCCCcEEEEeCCCCCCCCCCCCHH-HHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238          220 IADIKAAPGGSFILLHGCAHNPTGIDPTPE-QWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (467)
Q Consensus       220 ~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~-~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (467)
                      ++.+++.+.+..++++...++++|...+.+ .+++|.++|++||+++|+||+|.++...+   ..+.. ......++++ 
T Consensus       177 e~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G---~~~~~-~~~~~~~di~-  251 (401)
T TIGR01885       177 EEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTG---KLLCV-DHENVKPDIV-  251 (401)
T ss_pred             HHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hhhHH-hhcCCCCCEE-
Confidence            998875445667888888999999988654 69999999999999999999998765432   11111 1112223444 


Q ss_pred             EecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                        .+||.++..|+|+||++   .++++++.            +.......+.+.+.+.+.++..+|+..      ++  +
T Consensus       252 --~~gK~l~~g~~~ig~v~---~~~~i~~~------------~~~~~~~~t~~~~p~~~~aa~a~L~~i------~~--~  306 (401)
T TIGR01885       252 --LLGKALSGGVYPVSAVL---ADDDVMLT------------IKPGEHGSTYGGNPLACAVAVAALEVL------EE--E  306 (401)
T ss_pred             --EeeccccCCCCCcEEEE---EcHHHHhh------------ccCCCCCCCCCCCHHHHHHHHHHHHHH------Hh--c
Confidence              36799997669999995   67777776            433222223344566666766665321      11  1


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEE-ecCCC------HHHHHHHHHcccEEEeCCC----eEEec-c
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFS-FTGLN------KAQSDNMTNKWHVYMTKDG----RISLA-G  446 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~-~~~l~------~~~~~~ll~~~gI~v~~gg----Ris~~-~  446 (467)
                      ...++.++..+++.+.|+ +++.+- +....+.|.++. +++.+      .++..++. ++||.+.+.+    ||+.. .
T Consensus       307 ~l~~~~~~~~~~~~~~L~-~l~~~~-~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~-~~Gv~v~~~~~~~lRi~p~l~  383 (401)
T TIGR01885       307 KLAENAEKLGEIFRDQLK-KLPKPI-ITEVRGRGLLNAIVIDESKTGRTAWDLCLKLK-EKGLLAKPTHGNIIRLAPPLV  383 (401)
T ss_pred             cHHHHHHHHHHHHHHHHH-hccCCc-eeEEeecCeeEEEEeccCcchhHHHHHHHHHH-hCCEEEEecCCCEEEEeCCcc
Confidence            344566677888999998 775311 122345666654 34332      23455555 5699998874    77753 3


Q ss_pred             CChhhHHHHHHHHHHHHH
Q 012238          447 LSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       447 ~~~~~i~~~~~~l~~~l~  464 (467)
                      .+++++++++++|+++++
T Consensus       384 ~t~~~i~~~l~~l~~~l~  401 (401)
T TIGR01885       384 ITEEQLDEGLEIIKKVID  401 (401)
T ss_pred             CCHHHHHHHHHHHHHHhC
Confidence            488999999999998763

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.82  E-value=1.9e-17  Score=169.17  Aligned_cols=343  Identities=13%  Similarity=0.068  Sum_probs=191.5

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcC--CCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y--~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.||+..|.--..-|  +-.|.|.+++.+.++.......  ....-..++-+.+++..-..    . .+++.+  +++
T Consensus        53 G~~ylD~~~g~~~~~lG--h~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~----~-~~~v~f--~~s  123 (451)
T PRK06918         53 GNQYIDFAGAIGTINVG--HSHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAALAPGS----F-DKKVLF--LNS  123 (451)
T ss_pred             CCEEEEcCCchhhcCCC--CCCHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHhCCCC----C-CCEEEE--cCC
Confidence            35789998775422223  2367788888887754321111  01222233444444442111    0 257888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CCC-------------CeEEeeeecC--CCCCCC--------
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-ARV-------------PWSEYRYYDP--KTVGLD--------  215 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~-------------~~~~v~~~~~--~~~~~d--------  215 (467)
                      |++|.+.+.++........+|+....+|.+....... .|-             .+..+|..+.  ...+..        
T Consensus       124 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (451)
T PRK06918        124 GAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFM  203 (451)
T ss_pred             cHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHH
Confidence            9999999866654444445788888888765433222 121             1122222100  001111        


Q ss_pred             hhhHHHHHHc--CCCCcEEEEeCCCCCCC-CCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh
Q 012238          216 FEGMIADIKA--APGGSFILLHGCAHNPT-GIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT  291 (467)
Q Consensus       216 ~~~l~~~l~~--~~~~~~~i~i~~p~NPT-G~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~  291 (467)
                      .+.+++.+..  .+++..+++ .-|-+.+ |.++ +.+.+++|.++|++||+++|+||+|.+|...+   ..++...+ .
T Consensus       204 ~~~~~~~~~~~~~~~~iAavi-~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g---~~~a~~~~-~  278 (451)
T PRK06918        204 IEEFKNFFISEVAPETIAAVV-MEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTG---KYFAIEHF-D  278 (451)
T ss_pred             HHHHHHHHHhhcCCCceEEEE-ECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccC---ceehhHhc-C
Confidence            1223333321  123344444 4555555 6544 55669999999999999999999999997542   12222222 2


Q ss_pred             cCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhH-
Q 012238          292 RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALF-  370 (467)
Q Consensus       292 ~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-  370 (467)
                      ..++   +.+|||.++ +|+|+||++   .++++++.            +.......+.+.+.+++.++..+|+  .+. 
T Consensus       279 v~pD---i~t~sK~l~-~G~pig~v~---~~~~i~~~------------~~~~~~~~T~~g~~l~~aaa~a~l~--~i~~  337 (451)
T PRK06918        279 VVPD---LITVSKSLG-AGVPISGVI---GRKEIMDE------------SAPGELGGTYAGSPLGCAAALAVLD--IIEK  337 (451)
T ss_pred             CCCC---EEeeehhhc-CCCccEEEE---EcHHHHhc------------cCCCCcCcCCCcCHHHHHHHHHHHH--HHHH
Confidence            1123   448999999 999999995   77777776            4433333455677777777666553  110 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecC-------C-CHHH---HHHHHHcccEEEeCC
Q 012238          371 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTG-------L-NKAQ---SDNMTNKWHVYMTKD  439 (467)
Q Consensus       371 ~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~-------l-~~~~---~~~ll~~~gI~v~~g  439 (467)
                      +.+.+.++.+.+++++..+.+.+    +.+.   +..+.+.|+++.|.-       . +.++   +.+.+.++||.+.++
T Consensus       338 ~~~~~~~~~~g~~l~~~l~~l~~----~~~~---~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~  410 (451)
T PRK06918        338 ENLNDRAIELGKVVMNRFEEMKN----KYNC---IGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSA  410 (451)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHh----hCCC---ceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeec
Confidence            11122233333333322222221    2221   223456678776532       1 2222   222234579999986


Q ss_pred             C------eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          440 G------RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 g------Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +      ||+++. ++++++++++++|.++++++
T Consensus       411 ~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~~~  444 (451)
T PRK06918        411 GTYGNVIRVLMPLVITDEQLEEGLTIIEESLQAC  444 (451)
T ss_pred             CCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence            3      888764 68999999999999998753

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.82  E-value=7.9e-18  Score=168.72  Aligned_cols=210  Identities=17%  Similarity=0.144  Sum_probs=142.7

Q ss_pred             cchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH----HHHhhCCCCe
Q 012238          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK----NIFNDARVPW  201 (467)
Q Consensus       126 ~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~----~~~~~~G~~~  201 (467)
                      .-..+|++.+|++...       ++.++   +++|+.++.++  + ..+.+||+|+++.|.|+...    ..++..|+++
T Consensus        54 p~~~~le~~lA~l~g~-------~~~v~---~~sG~~ai~~~--l-~~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v  120 (390)
T PRK08064         54 PTREALEDIIAELEGG-------TKGFA---FASGMAAISTA--F-LLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEH  120 (390)
T ss_pred             hhHHHHHHHHHHHhCC-------CCeEE---ECCHHHHHHHH--H-HHhCCCCEEEEccCccchHHHHHHHHHHHcCCEE
Confidence            3467899999999643       23444   47778888876  3 35779999999999997432    4556789999


Q ss_pred             EEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012238          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (467)
Q Consensus       202 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~  281 (467)
                      +.++.       .|++.+++.++   ++++++++++|+||||.+.+.+   +|.++|+++|+++|+|++|.......   
T Consensus       121 ~~v~~-------~d~~~l~~~l~---~~tklV~l~~p~NptG~~~dl~---~I~~la~~~g~~vvvD~a~~~~~~~~---  184 (390)
T PRK08064        121 TFVDM-------TNLEEVAQNIK---PNTKLFYVETPSNPLLKVTDIR---GVVKLAKAIGCLTFVDNTFLTPLLQK---  184 (390)
T ss_pred             EEECC-------CCHHHHHHhcC---CCceEEEEECCCCCCcEeccHH---HHHHHHHHcCCEEEEECCCCcccccC---
Confidence            98876       26888888886   5788999999999999987655   66777999999999999987654221   


Q ss_pred             ChhHHHHHHhcCCeEEEEecCccCccc-CCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHH
Q 012238          282 DASSVRLFATRGMELLVAQSYSKNLGL-YAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV  360 (467)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  360 (467)
                         ++    +. ...+++.|++|.++- +|...|+++  +.++++++.            ++..........+......+
T Consensus       185 ---~~----~~-g~Divv~S~tK~~~G~~~~laG~~v--~~~~~~~~~------------l~~~~~~~g~~~~~~~a~l~  242 (390)
T PRK08064        185 ---PL----DL-GADVVLHSATKFLAGHSDVLAGLAV--VKDEELAQK------------LYFLQNSFGAVLGVQDCWLV  242 (390)
T ss_pred             ---ch----hh-CCcEEEeecceeccCCccceeEEEE--eCCHHHHHH------------HHHHHHhcCCCCCHHHHHHH
Confidence               11    11 235789999999863 345567764  467777776            55444433333333333322


Q ss_pred             HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       361 ~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                         +..  +     +.+..+.++..++...+.+.|+
T Consensus       243 ---~~g--l-----~tl~~R~~~~~~~a~~la~~L~  268 (390)
T PRK08064        243 ---LRG--L-----KTLHVRLEHSSETANKIALYLQ  268 (390)
T ss_pred             ---Hcc--c-----CcHHHHHHHHHHHHHHHHHHHh
Confidence               221  1     1234455555666667777776

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.82  E-value=9.9e-18  Score=169.55  Aligned_cols=158  Identities=18%  Similarity=0.121  Sum_probs=124.0

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcch----HHHHhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH----KNIFNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~----~~~~~~~G~  199 (467)
                      +..-..+|++.+|++...        +..++  +++|+.|+..+  +...+.+||+|+++.|.|+..    ...++..|+
T Consensus        55 ~~p~~~~le~~lA~l~g~--------~~~v~--~~sG~~Ai~~a--l~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~  122 (418)
T TIGR01326        55 MNPTTDVLEQRIAALEGG--------VAALA--VASGQAAITYA--ILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGI  122 (418)
T ss_pred             CChhHHHHHHHHHHHhCC--------CeEEE--EccHHHHHHHH--HHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCc
Confidence            445578999999999643        24555  79999999987  555678999999999998643    345677899


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++.       .|++.+++.++   ++++++++++|+||||.+.+.   ++|+++|+++|+++|+|++|......  
T Consensus       123 ~v~~v~~-------~d~~~l~~~l~---~~t~~V~le~p~NPtg~v~dl---~~I~~la~~~~i~livD~t~~~~~~~--  187 (418)
T TIGR01326       123 EVRFVDP-------DDPEEFEKAID---ENTKAVFAETIGNPAINVPDI---EAIAEVAHAHGVPLIVDNTFATPYLC--  187 (418)
T ss_pred             EEEEECC-------CCHHHHHHhcC---cCCeEEEEECCCCCCCeecCH---HHHHHHHHHcCCEEEEECCCchhhcC--
Confidence            9888864       27899999886   567888999999999998874   57777799999999999998633211  


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                        .  ++    .. ..++++.|+||.++.+|+|+||++
T Consensus       188 --~--~l----~~-g~Divv~S~sK~l~g~G~~lGg~v  216 (418)
T TIGR01326       188 --R--PI----DH-GADIVVHSATKYIGGHGTAIGGVI  216 (418)
T ss_pred             --C--ch----hc-CCeEEEECccccccCCccceEEEE
Confidence              1  11    12 357899999999999999999996

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.82  E-value=3.3e-17  Score=165.92  Aligned_cols=341  Identities=13%  Similarity=0.069  Sum_probs=207.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC--CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.+|+..|..-..-|.  -.|.+.+++.+.++......+.  +.....++-+.+++..-..     ..+++++  +++
T Consensus        39 G~~ylD~~~g~~~~~lGh--~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~-----~~~~~~f--~~s  109 (421)
T PRK06777         39 GREYIDFAAGIAVLNTGH--RHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPID-----GPAKTAF--FTT  109 (421)
T ss_pred             CCEEEEcccCHHhhccCC--CCHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHhCCCC-----CCceEEE--eCC
Confidence            357899987743111122  3677888888877653212221  2222234444444442110     1357888  899


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CCCC-------------eEEeeeecCCC---CCCChhhHHHH
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-ARVP-------------WSEYRYYDPKT---VGLDFEGMIAD  222 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~~-------------~~~v~~~~~~~---~~~d~~~l~~~  222 (467)
                      |++|.+.+.++........+|+....+|.+....... .|..             +..++..+...   ...+++.+++.
T Consensus       110 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~  189 (421)
T PRK06777        110 GAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERL  189 (421)
T ss_pred             cHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHH
Confidence            9999999866554443445788888888766433221 2210             11112211000   01235667777


Q ss_pred             HHc--CCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012238          223 IKA--APGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (467)
Q Consensus       223 l~~--~~~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (467)
                      +++  .+++...+++...++..|. +++.+.+++|.++|++||+++|+||+|.++...+   ..+....+ ...++++  
T Consensus       190 ~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g---~~~~~~~~-~~~pDiv--  263 (421)
T PRK06777        190 FKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTG---KLFAMEYY-DVKPDLI--  263 (421)
T ss_pred             HHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCC---chhhhhhc-CCCCCEE--
Confidence            753  2355667777777888886 5789999999999999999999999999886542   22222111 2223433  


Q ss_pred             ecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM  379 (467)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~  379 (467)
                       ++||.++ +|+|+||++   .++++++.            +.......+.+.+.+++.++...|+..      ++  +.
T Consensus       264 -~~sK~l~-~G~pigav~---~~~~i~~~------------~~~~~~~~T~~~~p~~~aaa~a~L~~~------~~--~~  318 (421)
T PRK06777        264 -TMAKSLG-GGMPISAVV---GRAEVMDA------------PAPGGLGGTYAGNPLAVAAALAVLDVI------AE--EK  318 (421)
T ss_pred             -eeehhhc-CCCceEEEE---EcHHHHhc------------cCCCCCCCCCCcCHHHHHHHHHHHHHH------Hh--cc
Confidence             6899999 999999995   77777776            443333334456777888887777421      11  24


Q ss_pred             HHHHHHHHHHHHHHHhhhccCC--CCCcccccCCcceEEe-cCC------CHHHHHHH---HHcccEEEeCCC------e
Q 012238          380 MAGRIKNVRQKLFDSLSAKDKS--GKDWSFILRQIGMFSF-TGL------NKAQSDNM---TNKWHVYMTKDG------R  441 (467)
Q Consensus       380 ~~~~~~~~r~~l~~~l~~~~g~--~~~~~~~~~~~g~f~~-~~l------~~~~~~~l---l~~~gI~v~~gg------R  441 (467)
                      ..++++++.+++.+.|+ ++..  | .+..+.+.|.+|.+ +..      +.++...+   +.++||++.+++      |
T Consensus       319 l~~~~~~~g~~l~~~L~-~l~~~~~-~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr  396 (421)
T PRK06777        319 LCQRALILGAHLVEVLE-KAKASCP-AIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIR  396 (421)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHhCC-CeEEecCceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCCCCEEE
Confidence            56667777777777776 5421  1 13345677877753 321      12232222   334699999874      7


Q ss_pred             EEec-cCChhhHHHHHHHHHHHHH
Q 012238          442 ISLA-GLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       442 is~~-~~~~~~i~~~~~~l~~~l~  464 (467)
                      |++. .++++++++++++|.+++.
T Consensus       397 ~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        397 FLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHh
Confidence            7764 3588999999999998874

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.82  E-value=2e-17  Score=164.90  Aligned_cols=212  Identities=16%  Similarity=0.143  Sum_probs=142.9

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcc-hH---HHHhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN-HK---NIFNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~-~~---~~~~~~G~  199 (467)
                      +.....+|++.+|++....       ..++   +++|+.++.++   +..+.+||+|+++.|+|+. |.   ..++..|+
T Consensus        48 ~~p~~~~Le~~lA~l~g~~-------~~~~---~~sG~aai~~~---~~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~  114 (377)
T PRK07671         48 GNPTRAALEELIAVLEGGH-------AGFA---FGSGMAAITAV---MMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGI  114 (377)
T ss_pred             CChHHHHHHHHHHHHhCCC-------ceEE---eCCHHHHHHHH---HHHhCCCCEEEECCCccchHHHHHHHHHhcCCe
Confidence            4455788999999996432       2344   46677888765   4567899999999999984 43   23456788


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++.       .|++.++++++   +++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....... 
T Consensus       115 ~v~~v~~-------~d~~~l~~ai~---~~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~~~~~-  180 (377)
T PRK07671        115 EHTFVDT-------SNLEEVEEAIR---PNTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFMTPYWQS-  180 (377)
T ss_pred             EEEEECC-------CCHHHHHHhcC---CCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCCccccCC-
Confidence            8888764       48899999887   57889999999999999866   4567777999999999999987543321 


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccCCC-ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                           ++    .. ...+++.|+||.++.++- -.|+++  +.+++++++            +...+.......+.....
T Consensus       181 -----p~----~~-g~Divv~S~sK~l~G~~~~~~G~~v--~~~~~l~~~------------~~~~~~~~g~~~~~~~a~  236 (377)
T PRK07671        181 -----PI----SL-GADIVLHSATKYLGGHSDVVAGLVV--VNSPELAED------------LHFVQNSTGGILGPQDSW  236 (377)
T ss_pred             -----hh----hh-CCeEEEecCcccccCCccceeEEEE--eCcHHHHHH------------HHHHHHhhcCCCCHHHHH
Confidence                 11    11 235889999999985543 235453  567777776            443333323334444333


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      .+..-+          +.+..+.++..++...+.+.|+
T Consensus       237 l~~~~l----------~tl~~R~~~~~~na~~la~~L~  264 (377)
T PRK07671        237 LLLRGL----------KTLGIRMEEHETNSRAIAEFLN  264 (377)
T ss_pred             HHHcCc----------ChHHHHHHHHHHHHHHHHHHHH
Confidence            332222          1244455666677777777777

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.81  E-value=2e-17  Score=167.22  Aligned_cols=157  Identities=18%  Similarity=0.145  Sum_probs=123.1

Q ss_pred             CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcch----HHHHhhCCCC
Q 012238          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH----KNIFNDARVP  200 (467)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~----~~~~~~~G~~  200 (467)
                      ..-...|.+.+|++...        +..++  +++|++|+..+  +...+.+||+|+++.|.|+..    ...++..|++
T Consensus        63 ~p~~~~Le~~lA~leg~--------~~al~--~~sG~~Ai~~a--l~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~  130 (431)
T PRK08248         63 NPTTDVFEKRIAALEGG--------IGALA--VSSGQAAITYS--ILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGIT  130 (431)
T ss_pred             CchHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEE
Confidence            44577899999999543        24555  79999999987  556678999999999988653    3456678999


Q ss_pred             eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012238          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (467)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~  280 (467)
                      ++.++.       .|++.+++.++   ++++++++++|+||||.+.+.+   +|+++|+++|+++|+|++|..-. .   
T Consensus       131 v~~vd~-------~d~e~l~~ai~---~~tklV~l~sp~NPtG~v~di~---~I~~la~~~gi~vIvD~t~a~~~-~---  193 (431)
T PRK08248        131 VKFVDP-------SDPENFEAAIT---DKTKALFAETIGNPKGDVLDIE---AVAAIAHEHGIPLIVDNTFASPY-L---  193 (431)
T ss_pred             EEEECC-------CCHHHHHHhcC---CCCeEEEEECCCCCCCcccCHH---HHHHHHHHcCCEEEEeCCCCccc-c---
Confidence            988875       48899999887   5678888999999999999865   77777999999999999975211 1   


Q ss_pred             CChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                        ..++    +. ...+++.|++|.++.+|.++|+++
T Consensus       194 --~~pl----~~-gaDivv~S~tK~lgg~g~~~Gg~v  223 (431)
T PRK08248        194 --LRPI----EH-GADIVVHSATKFIGGHGTSIGGVI  223 (431)
T ss_pred             --CChh----Hc-CCCEEEEcCccccCCCCCceEEEE
Confidence              1111    22 345788999999999999999986

>PRK05939 hypothetical protein; Provisional

Probab=99.81  E-value=2.7e-17  Score=164.77  Aligned_cols=154  Identities=16%  Similarity=0.128  Sum_probs=120.3

Q ss_pred             hHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HHhhCCCCeEEe
Q 012238          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEY  204 (467)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~---~~~~~G~~~~~v  204 (467)
                      ..+|++.++++....       ..++   +.+|+.|+..+  +...+.+||+|+++++.|+.+..   .++..|++++.+
T Consensus        49 ~~~lE~~la~leg~~-------~~v~---~ssG~~Ai~~~--l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v  116 (397)
T PRK05939         49 TAALEAKITKMEGGV-------GTVC---FATGMAAIAAV--FLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMV  116 (397)
T ss_pred             HHHHHHHHHHHhCCC-------eEEE---eCCHHHHHHHH--HHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEEE
Confidence            348999999995443       2344   46779999987  55567899999999999976543   456789998888


Q ss_pred             eeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChh
Q 012238          205 RYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS  284 (467)
Q Consensus       205 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~  284 (467)
                      +.       .|++.+++.++   ++++++++++|+||||.+   .++++|+++|+++|+++|+|++|.....    .+..
T Consensus       117 ~~-------~d~e~l~~~l~---~~tklV~vesp~NptG~v---~dl~~I~~la~~~gi~livD~t~a~~~~----~~~~  179 (397)
T PRK05939        117 DA-------TDVQNVAAAIR---PNTRMVFVETIANPGTQV---ADLAGIGALCRERGLLYVVDNTMTSPWL----FRPK  179 (397)
T ss_pred             CC-------CCHHHHHHhCC---CCCeEEEEECCCCCCCCH---HhHHHHHHHHHHcCCEEEEECCcccccc----cCcc
Confidence            75       37899999887   678899999999999987   4577899999999999999999753221    0110


Q ss_pred             HHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          285 SVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       285 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                             .....+++.|+||.++.+|.++|+++
T Consensus       180 -------~~gaDivv~S~sK~~~g~g~~igg~v  205 (397)
T PRK05939        180 -------DVGASLVINSLSKYIAGHGNALGGAV  205 (397)
T ss_pred             -------ccCCEEEEecCeecccCCCCeEEEEE
Confidence                   11357899999999999999999986

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.81  E-value=1.6e-17  Score=166.18  Aligned_cols=321  Identities=17%  Similarity=0.141  Sum_probs=203.5

Q ss_pred             CCCCCCCCchHHHHHHHHHHHhcCCC----CcCCC----CcchHHHHHHHHHHHhCCCCccccc-CceeeeecCCchhHH
Q 012238           94 RTEELQPYVLDVVKKAENLMLERGEN----KEYLP----IEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSGTGSL  164 (467)
Q Consensus        94 ~d~~~~p~~~~~v~~a~~~~~~~~~~----~~Y~~----~~G~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~ggt~al  164 (467)
                      +|.++..+.|+.|.+++.+.+.....    ..+..    ..-+.++|+.++++++..      + ++|++  +.|+|.++
T Consensus         3 ld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~------~~~~v~~--~~~~t~a~   74 (371)
T PF00266_consen    3 LDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAP------PDEEVVF--TSNGTEAL   74 (371)
T ss_dssp             EBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSS------TTEEEEE--ESSHHHHH
T ss_pred             eeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCc------ccccccc--ccccchhh
Confidence            44555556688999999888643110    11111    234578999999998765      4 68888  99999999


Q ss_pred             HHHHHHHH-HhCCCCEEEEcCCCCcchH----HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          165 RLAAALIE-RYFPGAKVLISSPTWGNHK----NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       165 ~l~~~~l~-~~~~gd~Vlv~~P~y~~~~----~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +.++..+. .+.+||+|++.+-.|+...    .+.+..|+++..++..  .+..+|++.+++.+.   +++++++++..+
T Consensus        75 ~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~--~~~~~~~~~~~~~l~---~~~~lv~~~~~~  149 (371)
T PF00266_consen   75 NAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPAD--PGGSLDLEDLEEALN---PDTRLVSISHVE  149 (371)
T ss_dssp             HHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEG--TTSSCSHHHHHHHHH---TTESEEEEESBE
T ss_pred             hhhhhccccccccccccccccccccccccccccccccchhhhcccccc--ccchhhhhhhhhhhc---cccceEEeeccc
Confidence            99733321 1579999999998887554    4445789999999884  356799999999998   688899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      |-||..++.+   +|.++|+++|+++++|.+.. +...+.+.         +...-.+++.|..|.+|.+|  +|+++  
T Consensus       150 ~~tG~~~pi~---~I~~~~~~~~~~~~vD~~~~-~g~~~id~---------~~~~~D~~~~s~~Kl~gp~G--~g~l~--  212 (371)
T PF00266_consen  150 NSTGVRNPIE---EIAKLAHEYGALLVVDAAQS-AGCVPIDL---------DELGADFLVFSSHKLGGPPG--LGFLY--  212 (371)
T ss_dssp             TTTTBBSSHH---HHHHHHHHTTSEEEEE-TTT-TTTSS--T---------TTTTESEEEEESTSTTSSST--EEEEE--
T ss_pred             ccccEEeeec---eehhhhhccCCceeEechhc-cccccccc---------cccccceeeecccccCCCCc--hhhhe--
Confidence            9999999866   66777999999999999943 43322221         12234577888889777777  58885  


Q ss_pred             cCCHHHHhhhhhh---h--HHHHHH--HH--HhhccCccC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012238          320 CSSSDLAARCCEV---A--VIQVKS--QL--KRLARPMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ  389 (467)
Q Consensus       320 ~~~~~~~~~~~~~---~--~~~~~~--~l--~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~  389 (467)
                       .+++.+++ +++   +  +.....  ..  ......... .++.....++..+++   +..  +..++++.++..+..+
T Consensus       213 -v~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~---~~~--~~g~~~i~~~~~~l~~  285 (371)
T PF00266_consen  213 -VRPEAIER-LRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALK---LLE--EIGIERIRERIRELAE  285 (371)
T ss_dssp             -EEHHHHHH-HHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHH
T ss_pred             -ehhhhhhc-cccccccccccccccchhcccccccccccccceeeehhhhHHHHHh---hhh--ccccccchhhhhhHHH
Confidence             45566665 111   0  000000  00  000011111 233333333333331   111  2346778888889999


Q ss_pred             HHHHHhhhccCCCCCcccccC-----CcceEE--ecCCCHHHHHHHHHcccEEEeCC--------------C--eEEecc
Q 012238          390 KLFDSLSAKDKSGKDWSFILR-----QIGMFS--FTGLNKAQSDNMTNKWHVYMTKD--------------G--RISLAG  446 (467)
Q Consensus       390 ~l~~~l~~~~g~~~~~~~~~~-----~~g~f~--~~~l~~~~~~~ll~~~gI~v~~g--------------g--Ris~~~  446 (467)
                      ++.+.|. +++.   +.+..+     .++...  +.+.+.+.+.+.|++.||.+..|              |  |+|+..
T Consensus       286 ~~~~~l~-~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~  361 (371)
T PF00266_consen  286 YLREALE-ELPG---IEVLGPDDEPRRPSIVSFNLPGSDADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHY  361 (371)
T ss_dssp             HHHHHHH-HTTT---EEESSSSCGGBGTTEEEEEETTSSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GT
T ss_pred             HHHhhhh-cCCc---eeEeeecccccccceEEEeecCCCHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccC
Confidence            9999998 7653   344322     233333  34667777666666669999874              3  999876


Q ss_pred             C-ChhhHHHH
Q 012238          447 L-SLAKCEYL  455 (467)
Q Consensus       447 ~-~~~~i~~~  455 (467)
                      . +++|++++
T Consensus       362 ~nt~~dv~~l  371 (371)
T PF00266_consen  362 YNTEEDVDRL  371 (371)
T ss_dssp             TSSHHHHHHH
T ss_pred             CCCHHHHhhC
Confidence            6 55788764

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.81  E-value=3.4e-17  Score=163.83  Aligned_cols=188  Identities=16%  Similarity=0.088  Sum_probs=131.0

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-hCCCCEEE
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKVL  181 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~~~gd~Vl  181 (467)
                      .+.-.+++.+.+..+.  .|+...-..++.+.+++++    |    .+++++  ++||++|+.++  +... +.+||+|+
T Consensus        10 ~~~~~~~~~~~l~~~~--~~g~~~~~~~~e~~la~~~----g----~~~~v~--~~sgt~al~~~--l~~~~~~~Gd~Vi   75 (375)
T PRK11706         10 VGTELDYIQQAMSSGK--LCGDGGFTRRCQQWLEQRF----G----SAKVLL--TPSCTAALEMA--ALLLDIQPGDEVI   75 (375)
T ss_pred             CHHHHHHHHHHHHcCC--ccCCCHHHHHHHHHHHHHh----C----CCeEEE--ECCHHHHHHHH--HHHhCCCCCCEEE
Confidence            4445666666665442  2321122344445555552    2    358888  99999999886  2323 56999999


Q ss_pred             EcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc
Q 012238          182 ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK  261 (467)
Q Consensus       182 v~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~  261 (467)
                      ++.|+|..+...++..|++++.++++ ++++.+|++.+++.++   +++++++++   ||||...+   +++|.++|+++
T Consensus        76 v~~~t~~~~~~~~~~~G~~~v~~d~d-~~~~~~d~~~le~~i~---~~tk~i~~~---~~~G~~~~---~~~i~~la~~~  145 (375)
T PRK11706         76 MPSYTFVSTANAFVLRGAKIVFVDIR-PDTMNIDETLIEAAIT---PKTRAIVPV---HYAGVACE---MDTIMALAKKH  145 (375)
T ss_pred             ECCCCcHHHHHHHHHcCCEEEEEecC-CCcCCcCHHHHHHhcC---CCCeEEEEe---CCCCCccC---HHHHHHHHHHc
Confidence            99999999999999999999999985 4467899999999987   466777754   57998765   45778889999


Q ss_pred             CCeeEEeccCCCCC-CCCCCCChhHHHHHHhcCCeEEEEecCc--cCcccCCCccceEEEecCCHHHHhh
Q 012238          262 NHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       262 ~~~li~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                      |++||+|++|.... +++   .  ++   ...  ..+.+.||.  |.++ +|.+.+++   +.++++.++
T Consensus       146 ~i~vIeD~a~a~g~~~~~---~--~~---g~~--~~~~~~Sf~~~K~l~-~g~gG~~~---~~~~~~~~~  201 (375)
T PRK11706        146 NLFVVEDAAQGVMSTYKG---R--AL---GTI--GHIGCFSFHETKNYT-AGEGGALL---INDPALIER  201 (375)
T ss_pred             CCEEEEECccccccccCC---e--ee---ecC--cCEEEEeCCCCcccc-ccCCeEEE---ECCHHHHHH
Confidence            99999999987655 221   0  11   011  123444544  9997 68876676   488888876

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.80  E-value=2.4e-17  Score=169.49  Aligned_cols=342  Identities=11%  Similarity=0.016  Sum_probs=198.3

Q ss_pred             EEecCcccCCCCCCCCchHHHHHHHHHHH-hcCCCCcCC---CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           86 LNLGVGAYRTEELQPYVLDVVKKAENLML-ERGENKEYL---PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        86 i~l~~G~~~d~~~~p~~~~~v~~a~~~~~-~~~~~~~Y~---~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      --++.|.+    ...+ ++.+.+++.+.. ..+ .+.|.   ...|..+++..+.+++....|.+    ++.+..+.|++
T Consensus        71 ~~~g~G~~----~~~~-~p~i~~~~~~~~~~~~-~tpYq~e~~sqG~lel~~~~~~~la~l~G~~----~~~l~~~~GA~  140 (481)
T PRK04366         71 GFYPLGSC----TMKY-NPKINEKVARLPGFAE-LHPLQPEETVQGALELMYELQEWLKEITGMD----AVTLQPAAGAH  140 (481)
T ss_pred             ceecCccc----CCCC-CHHHHHHHHhCcchhc-CCCCCChhhhhHHHHHHHHHHHHHHHHhCCC----ceEEEeCcHHH
Confidence            33677766    3444 667777766642 122 25563   45688888888888887666643    33332245555


Q ss_pred             hHHHHHHHHH-HHhCCCC----EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeC
Q 012238          162 GSLRLAAALI-ERYFPGA----KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG  236 (467)
Q Consensus       162 ~al~l~~~~l-~~~~~gd----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~  236 (467)
                      +.+..+..+. ....+||    +|+++.|+|+.|...++..|++++.+++  +.++.+|++.+++.+.   +++++++++
T Consensus       141 a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~--~~~~~~D~e~L~~~i~---~~t~~V~v~  215 (481)
T PRK04366        141 GELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPS--NEDGLVDLEALKAAVG---EDTAALMLT  215 (481)
T ss_pred             HHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeec--CCCCCcCHHHHHhhcc---cCCeEEEEe
Confidence            5544331111 1245776    9999999999999999999999999998  3457899999999886   567888889


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC----CCc
Q 012238          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY----AER  312 (467)
Q Consensus       237 ~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----G~R  312 (467)
                      +|| |||..  ..++++|+++|+++|.++++|.++..-..+..  +.      .+. .-.++++|.+|.++.|    |-.
T Consensus       216 ~Pn-~tG~~--~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~--~~------~~~-GaD~~~~~~hK~l~~P~g~Ggp~  283 (481)
T PRK04366        216 NPN-TLGLF--ERNILEIAEIVHEAGGLLYYDGANLNAILGKA--RP------GDM-GFDVVHLNLHKTFSTPHGGGGPG  283 (481)
T ss_pred             CCC-Ccccc--chHHHHHHHHHHHcCCEEEEEecChhhhcccC--Cc------ccc-CCCEEEEechhhcCCCCCCCCCC
Confidence            987 99964  35689999999999999999999632111211  10      011 2357788888988754    334


Q ss_pred             cceEEEecCCHHHHhhhhhhhHH---H-HHHHHH---hhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238          313 IGAMNVVCSSSDLAARCCEVAVI---Q-VKSQLK---RLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  385 (467)
Q Consensus       313 iG~~~~v~~~~~~~~~~~~~~~~---~-~~~~l~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~  385 (467)
                      +|++.   ..+++.+.-....++   + +.-.+.   .+.+.-....+.....++...+..     .-.+.+++..++..
T Consensus       284 ~G~l~---~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~-----~G~~Gl~~~a~~~~  355 (481)
T PRK04366        284 SGPVG---VKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRS-----LGAEGLREVSEDAV  355 (481)
T ss_pred             eeeee---ehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence            57774   334444330000000   0 000000   000000001111221222222211     01234566667777


Q ss_pred             HHHHHHHHHhhhccCCCCCcccccCCcceEEec-------CCCHHHHHHHHHcccEEEe-------CCC--eEEeccC-C
Q 012238          386 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT-------GLNKAQSDNMTNKWHVYMT-------KDG--RISLAGL-S  448 (467)
Q Consensus       386 ~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~-------~l~~~~~~~ll~~~gI~v~-------~gg--Ris~~~~-~  448 (467)
                      .+.+++.+.|+ ++ +.  +.+..+...-|++-       +.+.+.+.+.|.++||.+.       ..+  |++++.. +
T Consensus       356 ~~a~~l~~~L~-~~-~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t  431 (481)
T PRK04366        356 LNANYLKARLK-DI-YD--LPYDRPCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETES  431 (481)
T ss_pred             HHHHHHHHHhH-hh-Cc--ccCCCCeeEEEEEECccccccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCC
Confidence            77888888888 64 10  12111111112221       2344444444445698864       123  7877543 6


Q ss_pred             hhhHHHHHHHHHHHHHhc
Q 012238          449 LAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       449 ~~~i~~~~~~l~~~l~~~  466 (467)
                      ++++++++++|.++.+++
T Consensus       432 ~edid~l~~~l~~i~~~~  449 (481)
T PRK04366        432 KETLDAFIAAMKQIAEEA  449 (481)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            799999999999987653

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.80  E-value=1.9e-17  Score=165.23  Aligned_cols=162  Identities=16%  Similarity=0.161  Sum_probs=121.3

Q ss_pred             hHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCCCeEE
Q 012238          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARVPWSE  203 (467)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~~~  203 (467)
                      ..+|++.++++++.        +++++  +++|+.++.++   +..+.+||+|+++.+.|..+..    .++..|++++.
T Consensus        49 ~~~le~~la~l~g~--------~~~l~--~~sG~~al~~~---l~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~  115 (378)
T TIGR01329        49 RTALESLLAKLDKA--------DRAFA--FSSGMAALDVI---TRLLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVH  115 (378)
T ss_pred             HHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH---HHHhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEE
Confidence            67888888888543        34555  57788888875   3457899999999999987654    34568999998


Q ss_pred             eeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCCh
Q 012238          204 YRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (467)
Q Consensus       204 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~  283 (467)
                      ++.       .|++.+++.++   ++++++++++|+||||.+.+   +++|+++|+++|+++|+|++|......      
T Consensus       116 vd~-------~d~~~le~~i~---~~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~~~~------  176 (378)
T TIGR01329       116 VDT-------TDLDKVKAALG---PKTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSPLLC------  176 (378)
T ss_pred             eCC-------CCHHHHHHhcC---cCceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccC------
Confidence            876       37899999887   67889999999999999887   557788899999999999996432211      


Q ss_pred             hHHHHHHhcCCeEEEEecCccCcccC-CCccceEEEecCCHHHHhh
Q 012238          284 SSVRLFATRGMELLVAQSYSKNLGLY-AERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       284 ~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RiG~~~~v~~~~~~~~~  328 (467)
                      .++    +.+ -.+++.|++|.++-+ |.+.|+++  +.++++.++
T Consensus       177 ~~l----~~g-~Di~v~S~tK~l~G~~~~~~G~v~--~~~~~~~~~  215 (378)
T TIGR01329       177 NPL----ELG-ADIVYHSATKFLAGHSDVMAGVLA--VKGEEIAKK  215 (378)
T ss_pred             Chh----hcC-CcEEEEecceeccCCccceeEEEE--eCcHHHHHH
Confidence            111    112 358899999988643 57789885  456666565

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PLN02509 cystathionine beta-lyase

Probab=99.80  E-value=3.5e-17  Score=165.72  Aligned_cols=221  Identities=14%  Similarity=0.123  Sum_probs=142.3

Q ss_pred             CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHh
Q 012238          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFN  195 (467)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~----~~~  195 (467)
                      +.|... |.+ .++++.+++....+    .++.++  +++|++++.++   +..+.+||+|+++.|.|..+..    .+.
T Consensus       125 ~~Y~r~-gnp-t~~aLE~~lA~leg----~e~ai~--~~SG~aAi~~i---l~ll~~GD~VI~~~~~y~~t~~ll~~~l~  193 (464)
T PLN02509        125 YDYTRS-GNP-TRDALESLLAKLDK----ADRAFC--FTSGMAALSAV---THLIKNGEEIVAGDDVYGGSDRLLSQVVP  193 (464)
T ss_pred             CccCCC-CCH-HHHHHHHHHHHHhC----CCEEEE--eCcHHHHHHHH---HHHhCCCCEEEEcCCchhhHHHHHHHHHH
Confidence            567543 543 34444444333221    345555  68888888765   4457899999999999998763    345


Q ss_pred             hCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012238          196 DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA  275 (467)
Q Consensus       196 ~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~  275 (467)
                      ..|++++.++.       .|++.+++.++   +++++|++++|+||||.+   .++++|+++|+++|+++|+|++|....
T Consensus       194 ~~G~~v~~vd~-------~d~e~l~~ai~---~~TklV~lesPsNPtG~i---~Dl~~I~~lAk~~g~~lIVD~A~a~~~  260 (464)
T PLN02509        194 RSGVVVKRVNT-------TNLDEVAAAIG---PQTKLVWLESPTNPRQQI---SDIRKIAEMAHAQGALVLVDNSIMSPV  260 (464)
T ss_pred             HCCeEEEEeCC-------CCHHHHHHhCC---cCCeEEEEECCCCCCCCH---HHHHHHHHHHHHcCCEEEEECCccccc
Confidence            77988887754       47888888886   678899999999999985   668888999999999999999975433


Q ss_pred             CCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchH
Q 012238          276 SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH  355 (467)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  355 (467)
                      .+.      ++    .. ...+++.|++|.++-+|--+|.++ ++.++.+.+.            +...+.......+.+
T Consensus       261 ~~~------pl----~~-gaDivv~S~tK~l~G~gdv~gG~v-~~~~~~l~~~------------~~~~~~~~g~~l~p~  316 (464)
T PLN02509        261 LSR------PL----EL-GADIVMHSATKFIAGHSDVMAGVL-AVKGEKLAKE------------VYFLQNSEGSGLAPF  316 (464)
T ss_pred             cCC------hh----hc-CCcEEEecCcccccCCCccceeEE-EeccHHHHHH------------HHHHHHhcCCCcCHH
Confidence            221      11    11 235889999999876554334433 1345554444            222222112223433


Q ss_pred             HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       356 ~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                      ...++..-|          +.+..+.++..++...+.+.|+ +.
T Consensus       317 ~A~l~lr~L----------~tL~~R~~r~~~nA~~la~~L~-~~  349 (464)
T PLN02509        317 DCWLCLRGI----------KTMALRIEKQQENARKIAMYLS-SH  349 (464)
T ss_pred             HHHHHHhhh----------hhHHHHHHHHHHHHHHHHHHHh-cC
Confidence            333332222          3355667777778888888887 54

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.80  E-value=6.5e-17  Score=162.71  Aligned_cols=339  Identities=13%  Similarity=0.025  Sum_probs=198.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +...||+..|.--..-|.  -.|.|.+++.+.++... +.+ +. -..+....+++.|......   .+++.+  +++|+
T Consensus        39 G~~ylD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~~-~~~-~~-~~~~~~~~la~~L~~~~~~---~~~v~f--~~sGs  108 (408)
T PRK04612         39 GREYLDLAAGIAVCGLGH--NDPDLVAALTEQAGKLW-HTS-NV-FYSAPPLKLAEELVTASRF---AEKVFL--CNSGT  108 (408)
T ss_pred             CCEEEEcCccHhhccCCC--CCHHHHHHHHHHHHhcc-ccc-cc-cCCHHHHHHHHHHHhhCCC---CCEEEE--cCchH
Confidence            457899987753122232  36788888888775421 111 11 1122334455555432211   258888  99999


Q ss_pred             hHHHHHHHHHHHhC--CC-----CEEEEcCCCCcchHHHH-hhCCCCeEE---eeeecC--CCCCCChhhHHHHHHcCCC
Q 012238          162 GSLRLAAALIERYF--PG-----AKVLISSPTWGNHKNIF-NDARVPWSE---YRYYDP--KTVGLDFEGMIADIKAAPG  228 (467)
Q Consensus       162 ~al~l~~~~l~~~~--~g-----d~Vlv~~P~y~~~~~~~-~~~G~~~~~---v~~~~~--~~~~~d~~~l~~~l~~~~~  228 (467)
                      +|.+.+.++.....  .|     .+|+....+|.+..... ...|.....   -+..+.  .-...|++.+++.+.   .
T Consensus       109 eA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~  185 (408)
T PRK04612        109 EANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMA---G  185 (408)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhC---C
Confidence            99999866654431  22     36899898887654322 222211100   011000  001137888888885   2


Q ss_pred             CcEEEEeCCCCCCCCCCCC--HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc
Q 012238          229 GSFILLHGCAHNPTGIDPT--PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~~~--~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (467)
                      .....++..|.+++|.+++  .+.+++|.++|++||+++|+||+|.++...+   ..+..    ...+.+..+.+|||.+
T Consensus       186 ~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G---~~~a~----~~~~~~pdi~t~~K~l  258 (408)
T PRK04612        186 GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTG---TLFAH----WQEQVTPDIVTLAKAL  258 (408)
T ss_pred             CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC---chhhh----hhcCCCCCEEEEcchh
Confidence            3455556678888887766  6789999999999999999999998876532   11111    1223456678999999


Q ss_pred             ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012238          307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  386 (467)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~  386 (467)
                      + +|+|+||++   .++++++.            +.......+.+.+.+.+.++...|+.-      ++  ++..++.++
T Consensus       259 ~-~G~piga~~---~~~~~~~~------------~~~~~~~~t~~~~p~~~aaa~a~L~~~------~~--~~l~~~~~~  314 (408)
T PRK04612        259 G-GGFPIGAML---AGPKVAET------------MQFGAHGTTFGGNPLAAAVARVALRKL------AS--PQIAANVAR  314 (408)
T ss_pred             c-CCCceEEEE---ECHHHHhh------------hcCCCcCCCCCCCHHHHHHHHHHHHHH------Hh--ccHHHHHHH
Confidence            9 899999995   56666665            443333333446677777777666321      11  134455555


Q ss_pred             HHHHHHHHhhhccCCCCC-cccccCCcceEEe--cC-CC--HHHHHHHHHcccEEEeCCC----eEEec-cCChhhHHHH
Q 012238          387 VRQKLFDSLSAKDKSGKD-WSFILRQIGMFSF--TG-LN--KAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYL  455 (467)
Q Consensus       387 ~r~~l~~~l~~~~g~~~~-~~~~~~~~g~f~~--~~-l~--~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~~~i~~~  455 (467)
                      +-+++.+.|+ ++....+ +..+...|.++-.  .. ..  ...+.+.+.++||++.+.|    |+... .+++++++++
T Consensus       315 ~g~~l~~~l~-~l~~~~~~i~~vrg~Gl~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~~g~~~lRl~Ppl~it~eeid~~  393 (408)
T PRK04612        315 QSAALRAGLE-ALNAEFGVFAQVRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQAGPDVLRFVPALNLTDAELADG  393 (408)
T ss_pred             HHHHHHHHHH-HHHhhCCCeeeeeccceEEEEEecCchhhHHHHHHHHHHHCCeEEeeCCCCEEEEcCCccCCHHHHHHH
Confidence            5556666555 4321000 1223444433311  11 11  2233334445799998765    56532 3488999999


Q ss_pred             HHHHHHHHHh
Q 012238          456 ADAIIDSYHN  465 (467)
Q Consensus       456 ~~~l~~~l~~  465 (467)
                      +++|.+++.+
T Consensus       394 l~~l~~~l~~  403 (408)
T PRK04612        394 LARLRLALAD  403 (408)
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.80  E-value=4.5e-17  Score=163.48  Aligned_cols=153  Identities=19%  Similarity=0.174  Sum_probs=118.3

Q ss_pred             cchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCCCe
Q 012238          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPW  201 (467)
Q Consensus       126 ~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~~  201 (467)
                      +-..+|.+.+|++....        ..+.  +++|+.|+.++  +++.+.+||+|+++.++|......    +...|+++
T Consensus        61 Ptv~~lE~~la~leg~~--------~av~--~~SG~aAi~~a--l~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v  128 (432)
T PRK06702         61 PTLAAFEQKLAELEGGV--------GAVA--TASGQAAIMLA--VLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDV  128 (432)
T ss_pred             cHHHHHHHHHHHHhCCC--------cEEE--ECCHHHHHHHH--HHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEE
Confidence            45788999999996443        4555  89999999998  556688999999999999865554    67889998


Q ss_pred             EEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012238          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (467)
Q Consensus       202 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~  281 (467)
                      ..++.      .+|++.++++++   +++++|++.+|+||++.+.+   +++|+++|+++|+++|+|++|..-..-    
T Consensus       129 ~~vd~------~~d~~~l~~~I~---~~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP~~~----  192 (432)
T PRK06702        129 TFFNP------NLTADEIVALAN---DKTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATPYLC----  192 (432)
T ss_pred             EEECC------CCCHHHHHHhCC---cCCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCchhhC----
Confidence            88854      378999999998   67889999999999999988   557777799999999999997421100    


Q ss_pred             ChhHHHHHHhcCCeEEEEecCcc-----CcccCCCcc
Q 012238          282 DASSVRLFATRGMELLVAQSYSK-----NLGLYAERI  313 (467)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK-----~~~~~G~Ri  313 (467)
                      .  +    .+. .-.|++.|+||     ..+++|.++
T Consensus       193 ~--p----l~~-GADIvv~S~TKy~~Ghsd~l~G~v~  222 (432)
T PRK06702        193 Q--A----FEH-GANIIVHSTTKYIDGHASSLGGIVI  222 (432)
T ss_pred             C--h----hhc-CCCEEEEccccccCCCcceeceEEE
Confidence            0  1    111 23488999999     666666665

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.80  E-value=5.5e-17  Score=161.84  Aligned_cols=165  Identities=16%  Similarity=0.159  Sum_probs=121.2

Q ss_pred             cchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH----HHHhhCCCCe
Q 012238          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK----NIFNDARVPW  201 (467)
Q Consensus       126 ~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~----~~~~~~G~~~  201 (467)
                      +-...|+++++++....       ..+ +  +++|+.|+.++   +..+.|||+|++++|.|+...    ..++..|+++
T Consensus        50 p~~~~Le~~la~l~g~~-------~al-~--~~SG~~Al~~~---l~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v  116 (380)
T PRK06176         50 PTRFALEELIADLEGGV-------KGF-A--FASGLAGIHAV---FSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSC  116 (380)
T ss_pred             hhHHHHHHHHHHHhCCC-------CEE-E--ECCHHHHHHHH---HHHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEE
Confidence            34788999999995432       234 4  57778899865   456789999999999997543    3456678887


Q ss_pred             EEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012238          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (467)
Q Consensus       202 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~  281 (467)
                      +.++.       .|++.+++.++   +++++|++.+|+||||.+.+.+   +|+++|+++|+++|+|++|.......   
T Consensus       117 ~~vd~-------~d~e~l~~ai~---~~t~lV~lesP~Nptg~~~di~---~I~~la~~~gi~vivD~t~a~~~~~~---  180 (380)
T PRK06176        117 TIIDT-------SDLSQIKKAIK---PNTKALYLETPSNPLLKITDLA---QCASVAKDHGLLTIVDNTFATPYYQN---  180 (380)
T ss_pred             EEcCC-------CCHHHHHHhcC---cCceEEEEECCCCCCceecCHH---HHHHHHHHcCCEEEEECCccccccCC---
Confidence            77654       47899998886   5788999999999999988755   77777999999999999987644321   


Q ss_pred             ChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhh
Q 012238          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                         ++    .. ...+++.|++|.++.+|-.+|.++ ++.++++.++
T Consensus       181 ---p~----~~-gaDivv~S~tK~l~g~~d~~gG~v-v~~~~~~~~~  218 (380)
T PRK06176        181 ---PL----LL-GADIVVHSGTKYLGGHSDVVAGLV-TTNNEALAQE  218 (380)
T ss_pred             ---cc----cc-CCCEEEecCceeccCCccceeeEE-EecHHHHHHH
Confidence               11    11 235889999999987775555543 2556666665

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.80  E-value=1.3e-16  Score=162.23  Aligned_cols=342  Identities=15%  Similarity=0.102  Sum_probs=194.2

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +...||+..|.--..-|.  -.|.|.+++.+.+.....  +.......+.+..+|+.|.......  -+++.+  +++|+
T Consensus        40 G~~ylD~~~g~~~~~lGh--~~p~v~~Ai~~ql~~~~~--~~~~~~~~~~~~~la~~L~~~~p~~--~~~v~f--~~sGs  111 (443)
T PRK08360         40 GNEYIDFLSDAAVQNVGH--NNPRVVKAIKEQTDKLIH--YTPIYGFPVEPLLLAEKLIEIAPGD--NPKVSF--GLSGS  111 (443)
T ss_pred             CCEEEEccccHhhcccCC--CCHHHHHHHHHHHHhccC--ccccccCcHHHHHHHHHHHHhCCCC--CCEEEE--cCCHH
Confidence            457899988844222233  367888888887754221  1111111223334444443321110  247888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchH-HHHhhCCC------------CeEEeeeecCCC--CC--------CChhh
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHK-NIFNDARV------------PWSEYRYYDPKT--VG--------LDFEG  218 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~-~~~~~~G~------------~~~~v~~~~~~~--~~--------~d~~~  218 (467)
                      +|.+.+.++........+|+...-+|.+.. ..+...|.            .+..+|..+...  +.        .+++.
T Consensus       112 EAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (443)
T PRK08360        112 DANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEY  191 (443)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHH
Confidence            999998665544444457888887776543 22221221            123333311100  10        12345


Q ss_pred             HHHHHHc--CCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012238          219 MIADIKA--APGGSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (467)
Q Consensus       219 l~~~l~~--~~~~~~~i~i~~p~NPTG~~~~-~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~  295 (467)
                      +++.++.  .+++...+++...+||+|.+++ .+.+++|.++|++||+++|+||+|.++...+   ..+....+ ...++
T Consensus       192 ~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G---~~~a~~~~-~~~pD  267 (443)
T PRK08360        192 IKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTG---KWFAIEHF-GVEPD  267 (443)
T ss_pred             HHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---cchhhhhc-CCCCC
Confidence            6666653  1356777777777799999887 5579999999999999999999999886532   11122111 22334


Q ss_pred             EEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH
Q 012238          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA  375 (467)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  375 (467)
                      ++   ++||.++ +|+|+||++   .++++++.            +.......+.+.+.+.+.++...|+.  +.+    
T Consensus       268 ii---tlsK~l~-~G~pigav~---~~~~i~~~------------~~~~~~~~T~~~~p~~~aaa~a~l~~--l~~----  322 (443)
T PRK08360        268 II---TLGKPLG-GGLPISATI---GRAEIMDS------------LPPLAHAFTLSGNPVASAAALAVIEE--IEE----  322 (443)
T ss_pred             EE---Eeccccc-CCceeEEEE---EcHHHHhh------------hcCCCCCCCCCcCHHHHHHHHHHHHH--HHH----
Confidence            43   6799999 999999995   67777776            44332223445566667777666542  111    


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh---ccCCCCCcccccCCcceEEe-c--CC-----C----HHHHHHHHHcccEEEeCC-
Q 012238          376 EMEMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSF-T--GL-----N----KAQSDNMTNKWHVYMTKD-  439 (467)
Q Consensus       376 ~l~~~~~~~~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f~~-~--~l-----~----~~~~~~ll~~~gI~v~~g-  439 (467)
                        +...++.+++-+++.+.|++   +.+.   +..+...|-++-. +  +-     +    ..+..++++ +||++.+. 
T Consensus       323 --~~l~~~~~~~g~~l~~~L~~l~~~~~~---v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~  396 (443)
T PRK08360        323 --KNLLKRAEKLGNYTKKRLEEMKKKHEL---IGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWE-LGLIVTFFS  396 (443)
T ss_pred             --cCHHHHHHHHHHHHHHHHHHHHHhCCC---eeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHH-CCeEEeecC
Confidence              12233444444444444440   2222   1223334433311 1  10     1    123445554 69998764 


Q ss_pred             C---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          440 G---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 g---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +   ||+.. .+++++++++++++.++++.+
T Consensus       397 ~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~  427 (443)
T PRK08360        397 GNVLRIQPPLTIEKEVLDEGLDILEEAIEDV  427 (443)
T ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3   77433 238899999999999998754

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.79  E-value=7.4e-17  Score=162.92  Aligned_cols=157  Identities=15%  Similarity=0.089  Sum_probs=118.6

Q ss_pred             CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCCC
Q 012238          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVP  200 (467)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~  200 (467)
                      .....+|++.+|++...        +..++  +++|++|+.++  +...+.+||+|+++.|.|......+.    ..|++
T Consensus        57 ~pt~~~Le~~lA~l~g~--------~~~l~--~ssG~~Ai~~a--l~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~  124 (425)
T PRK06084         57 NPTNDVLEQRVAALEGG--------VGALA--VASGMAAITYA--IQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIE  124 (425)
T ss_pred             CchHHHHHHHHHHHhCC--------CceeE--ehhHHHHHHHH--HHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeE
Confidence            44567899999999543        23445  68999999998  45567899999999999985544443    24555


Q ss_pred             eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012238          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (467)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~  280 (467)
                      +..++.       .|++.+++.++   +++++|++++|+||||.+++.   ++|+++|+++|+++|+|++|......   
T Consensus       125 v~~~d~-------~d~e~le~ai~---~~tklV~lesp~NPtG~v~dl---~~I~~la~~~~i~vVvD~a~a~~~~~---  188 (425)
T PRK06084        125 TRFAAH-------DDIAALEALID---ERTKAVFCESIGNPAGNIIDI---QALADAAHRHGVPLIVDNTVATPVLC---  188 (425)
T ss_pred             EEEECC-------CCHHHHHHHhc---cCCcEEEEeCCCCCCCeecCH---HHHHHHHHHcCCEEEEECCCcccccC---
Confidence            544432       48999999987   467888999999999999985   57777799999999999998643221   


Q ss_pred             CChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                       .  ++    .. .-.+++.|++|.++.+|.++|.++
T Consensus       189 -~--p~----~~-gaDivv~S~tK~l~G~g~~~gG~v  217 (425)
T PRK06084        189 -R--PF----EH-GADIVVHSLTKYIGGHGTSIGGIV  217 (425)
T ss_pred             -C--hh----hc-CCCEEEECchhcccccccceeEEE
Confidence             1  11    11 235889999999999999999986

>PRK05968 hypothetical protein; Provisional

Probab=99.79  E-value=4.8e-17  Score=163.02  Aligned_cols=211  Identities=17%  Similarity=0.166  Sum_probs=142.6

Q ss_pred             cchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcc----hHHHHhhCCCCe
Q 012238          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN----HKNIFNDARVPW  201 (467)
Q Consensus       126 ~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~  201 (467)
                      .-..+|++++|++.+..        ..++  +.+|+.|+.++  +...+.|||+|+++.+.|..    +...++..|+++
T Consensus        63 p~~~~le~~lA~l~g~~--------~av~--~~sG~~Ai~~a--l~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v  130 (389)
T PRK05968         63 PTVRAFEEMLAKLEGAE--------DARG--FASGMAAISST--VLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEV  130 (389)
T ss_pred             hhHHHHHHHHHHHhCCC--------cEEE--ECCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceE
Confidence            34789999999996543        2334  57778899887  45567899999999999975    335667789998


Q ss_pred             EEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012238          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (467)
Q Consensus       202 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~  281 (467)
                      +.++.       .|++.+++.+.    +++++++++   |||..++..++++|+++|+++|+++|+|++|....+..   
T Consensus       131 ~~vd~-------~d~~~l~~~i~----~tklV~ie~---pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~---  193 (389)
T PRK05968        131 DYVDG-------RDEEAVAKALP----GAKLLYLES---PTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQR---  193 (389)
T ss_pred             EEeCC-------CCHHHHHHhcc----cCCEEEEEC---CCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccC---
Confidence            88764       37888888773    456777764   55556667889999999999999999999987654321   


Q ss_pred             ChhHHHHHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC-ccCCCchHHHHH
Q 012238          282 DASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP-MYSNPPVHGARI  359 (467)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~  359 (467)
                         ++    ..+ ..+++.|+||.++.+| .+.|+++   .+++++++            ++..... .....+.+.+.+
T Consensus       194 ---p~----~~g-~Divv~S~tK~l~g~~~~~gG~i~---~~~~~~~~------------l~~~~~~~~g~~~~~~~A~~  250 (389)
T PRK05968        194 ---PI----TLG-VDLVIHSASKYLGGHSDTVAGVVA---GSKEHIAR------------INAEAYPYLGAKLSPFEAWL  250 (389)
T ss_pred             ---ch----hcC-CcEEEeeccccccCCCCeEEEEEE---ECHHHHHH------------HHHHHHHhCCCCCChHHHHH
Confidence               11    112 2478889999998766 4678774   77777776            3322211 123344455444


Q ss_pred             HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          360 VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       360 ~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                      +...|+.          +..+.++..++...+.+.|+ ..
T Consensus       251 ~l~~L~t----------l~~r~~~~~~~a~~la~~L~-~~  279 (389)
T PRK05968        251 LLRGLRT----------LPLRMKAHEASALEIARRLK-AH  279 (389)
T ss_pred             HHcccCc----------HHHHHHHHHHHHHHHHHHHH-hC
Confidence            4444432          33444455555667777777 54

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.79  E-value=1.1e-16  Score=159.33  Aligned_cols=162  Identities=14%  Similarity=0.047  Sum_probs=120.7

Q ss_pred             hHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCCCeEE
Q 012238          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPWSE  203 (467)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~~~~  203 (467)
                      ...|++.+|++...        +++++  ++||++|+.++  +...+.+||+|++++|.|......    ++..|+++..
T Consensus        52 ~~~lE~~lA~l~g~--------~~~~~--~~sG~~Ai~~a--l~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~  119 (377)
T TIGR01324        52 HFALQDAMCELEGG--------AGCYL--YPSGLAAVTNS--ILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITY  119 (377)
T ss_pred             HHHHHHHHHHHhCC--------CcEEE--ECcHHHHHHHH--HHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEE
Confidence            46899999999543        36777  89999999998  556678999999999999876543    3567877766


Q ss_pred             eeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCCh
Q 012238          204 YRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (467)
Q Consensus       204 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~  283 (467)
                      ++..       +.+.+++.++   ++++++++++|+||||..   .++++|+++|+++|+++|+|++|..-....     
T Consensus       120 ~d~~-------~~e~l~~~i~---~~tklV~lesp~Np~g~~---~dl~~I~~la~~~g~~livD~t~a~g~~~~-----  181 (377)
T TIGR01324       120 YDPL-------IGEDIATLIQ---PNTKVLFLEAPSSITFEI---QDIPAIAKAARNPGIVIMIDNTWAAGLLFK-----  181 (377)
T ss_pred             ECCC-------CHHHHHHhcC---CCceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCCccccccC-----
Confidence            6431       2267877776   678999999999999874   567788999999999999999986433211     


Q ss_pred             hHHHHHHhcCCeEEEEecCccCcccC-CCccceEEEecCCHHHHhh
Q 012238          284 SSVRLFATRGMELLVAQSYSKNLGLY-AERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       284 ~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RiG~~~~v~~~~~~~~~  328 (467)
                       +.    +. .-.++++|++|.++-+ +...|+++   .+++..+.
T Consensus       182 -pl----~~-gaDivv~S~tK~l~G~~d~~gG~v~---~~~~~~~~  218 (377)
T TIGR01324       182 -PL----EH-GVDISIQAGTKYLVGHSDIMIGTVV---ANARTWDQ  218 (377)
T ss_pred             -cc----cc-CceEEEecCceeccCCCCceEEEEE---eCHHHHHH
Confidence             11    11 2358899999999744 35667664   66666665

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.79  E-value=7.1e-18  Score=163.05  Aligned_cols=172  Identities=16%  Similarity=0.026  Sum_probs=129.5

Q ss_pred             CCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCe
Q 012238          122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPW  201 (467)
Q Consensus       122 Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~  201 (467)
                      +.|..-+.++++.+|++++.       .+-+++  ++|+++++..+  +...+.|||+|+++.|+|..+...+...|+++
T Consensus        55 ~~~~g~i~~~~~~~A~~~ga-------~~~~~~--~~Gst~a~~~~--l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~  123 (294)
T cd00615          55 LDPTGPIKEAQELAARAFGA-------KHTFFL--VNGTSSSNKAV--ILAVCGPGDKILIDRNCHKSVINGLVLSGAVP  123 (294)
T ss_pred             CCCChHHHHHHHHHHHHhCC-------CCEEEE--cCcHHHHHHHH--HHHcCCCCCEEEEeCCchHHHHHHHHHCCCEE
Confidence            33555688999999999643       234445  79999999887  55567899999999999999988999999999


Q ss_pred             EEeeeecCCC----CCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC-CCC
Q 012238          202 SEYRYYDPKT----VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG-FAS  276 (467)
Q Consensus       202 ~~v~~~~~~~----~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~-~~~  276 (467)
                      ++++...+.+    +.+|++.+++.+++. ++++++++++| ||||.+++.   ++|+++|+++|+++|+||+|.. +.+
T Consensus       124 ~~v~~~~~~~~~~~~~i~~~~l~~~l~~~-~~~k~v~l~~p-~~~G~~~dl---~~I~~~~~~~g~~livDeA~~~~~~~  198 (294)
T cd00615         124 VYLKPERNPYYGIAGGIPPETFKKALIEH-PDAKAAVITNP-TYYGICYNL---RKIVEEAHHRGLPVLVDEAHGAHFRF  198 (294)
T ss_pred             EEecCccCcccCcCCCCCHHHHHHHHHhC-CCceEEEEECC-CCCCEecCH---HHHHHHHHhcCCeEEEECcchhhhcc
Confidence            9987643322    378999999999753 35678888888 799999875   5788889999999999999864 333


Q ss_pred             CCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          277 GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                      .+ ..+..     ......++++.|++|++  +|++.|+++
T Consensus       199 ~~-~~~~~-----~~~~~~div~~S~hK~l--~g~~~~~~l  231 (294)
T cd00615         199 HP-ILPSS-----AAMAGADIVVQSTHKTL--PALTQGSMI  231 (294)
T ss_pred             Cc-ccCcc-----hhhcCCcEEEEchhccc--chHhHHHHH
Confidence            21 01110     11234679999999985  788887764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.78  E-value=1.1e-16  Score=160.50  Aligned_cols=228  Identities=14%  Similarity=0.047  Sum_probs=156.6

Q ss_pred             hHHHHHHHHHHHhCCCCcccccCceeeeecCCchh-HHHHHHHHHHHhC----CCCEEEEcCCCCcchHHHHhhCCCCeE
Q 012238          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG-SLRLAAALIERYF----PGAKVLISSPTWGNHKNIFNDARVPWS  202 (467)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~-al~l~~~~l~~~~----~gd~Vlv~~P~y~~~~~~~~~~G~~~~  202 (467)
                      ..+|.+.+++++..+.     .+..++  ++|+|+ ++.++  + ..+.    +||.|+++.-+|......+...|++++
T Consensus       107 ~~~~e~~~~~~~G~~~-----~~~a~~--v~~~Tg~al~la--L-~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv  176 (444)
T TIGR03531       107 TNKLVKDFLKLLGLRS-----IKSAFV--VPLATGMSLSLC--L-SALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPR  176 (444)
T ss_pred             HHHHHHHHHHHcCCCC-----CCEEEE--ECCHHHHHHHHH--H-HHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEE
Confidence            3455556666643220     134666  789995 66665  2 2333    589999999999999999999999999


Q ss_pred             Eeee-ecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012238          203 EYRY-YDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (467)
Q Consensus       203 ~v~~-~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~  281 (467)
                      .++. .+++++.+|++.+++++++...++.++++++|+  ||.....+++++|+++|++||+++|+|++|.....     
T Consensus       177 ~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~-----  249 (444)
T TIGR03531       177 VIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSN-----  249 (444)
T ss_pred             EeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcCh-----
Confidence            9996 346689999999999998533356777776665  66666788899999999999999999999875321     


Q ss_pred             ChhHHHHHH----hcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHH
Q 012238          282 DASSVRLFA----TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGA  357 (467)
Q Consensus       282 ~~~~~~~~~----~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  357 (467)
                         ....+.    ..+.-.+++.|++|.+.+||+  |++++ +.++++++.            +......  ...+...+
T Consensus       250 ---~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~--Gg~I~-~~d~el~~~------------i~~~y~g--~~~~s~~~  309 (444)
T TIGR03531       250 ---KYMELINKAIKVGRVDAVVSSTDKNFMVPVG--GAIIY-SFDENFIQE------------ISKSYPG--RASASPSL  309 (444)
T ss_pred             ---hhhhhhhccccccCCCeEEEeCccCCCCCCC--EEEEE-ECCHHHHHH------------HHHhccC--CCCChHHH
Confidence               111111    111225678899999999887  77652 467887776            4433222  12333456


Q ss_pred             HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       358 ~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                      .++..++..+      .+.++++.+++.++++++.+.|. ++
T Consensus       310 ~~~~~ll~~G------~~g~~~li~~~~~~a~~l~~~L~-~l  344 (444)
T TIGR03531       310 DVLITLLSLG------SKGYLELLKERKEMYKYLKELLQ-KL  344 (444)
T ss_pred             HHHHHHHHhC------HHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            6666555433      34466777778888888888877 54

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.77  E-value=7.2e-16  Score=156.00  Aligned_cols=340  Identities=11%  Similarity=0.064  Sum_probs=191.9

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +...||+..|..-..-|.  -.|.|.+++.+.++....  ..+.+.....++-+.+++.....     ..+++++  +++
T Consensus        39 G~~ylD~~~g~~~~~lGh--~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~-----~~~~v~f--~~S  109 (425)
T PRK07495         39 GRRYIDFAAGIAVVNTGH--RHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPGD-----FAKKTIF--VTT  109 (425)
T ss_pred             CCEEEEccccHHhhccCC--CCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHhCCCC-----CCCEEEE--CCc
Confidence            457899987753222233  367788888887754211  11223333334444444442111     0257888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CCC-------------CeEEeeeecCCCCCCC----hhhHHH
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-ARV-------------PWSEYRYYDPKTVGLD----FEGMIA  221 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~-------------~~~~v~~~~~~~~~~d----~~~l~~  221 (467)
                      |++|.+.+.++........+|+...-+|.+....... .|.             .+..+|..+. ..+.+    ++.+++
T Consensus       110 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~l~~  188 (425)
T PRK07495        110 GAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVE-LHGVSVEQSLAALDK  188 (425)
T ss_pred             hHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcc-cccccHHHHHHHHHH
Confidence            9999999866544443445888888888765322111 110             1233333211 11222    344566


Q ss_pred             HHHc--CCCCcE-EEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012238          222 DIKA--APGGSF-ILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (467)
Q Consensus       222 ~l~~--~~~~~~-~i~i~~p~NPTG-~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  297 (467)
                      .++.  .+.+.. +++-+..+| +| ..++.+.+++|.++|++||+++|+||+|.+|...+   ..+..    +..+.+.
T Consensus       189 ~~~~~~~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G---~~~a~----~~~gv~p  260 (425)
T PRK07495        189 LFKADVDPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTG---KLFAM----EHHEVAA  260 (425)
T ss_pred             HHHhccCCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCC---Cceee----cccCCCC
Confidence            6642  123334 444444555 78 45799999999999999999999999998875432   11111    1112233


Q ss_pred             EEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l  377 (467)
                      -+.+|||.++ .|+++||++   .++++++.            +.......+.+.+.+++.++...|+-  +.+      
T Consensus       261 Di~tlsK~l~-~G~pigav~---~~~~i~~~------------~~~~~~~~T~~~~pl~~aaa~a~l~~--l~~------  316 (425)
T PRK07495        261 DLTTMAKGLA-GGFPLAAVT---GRAEIMDA------------PGPGGLGGTYGGNPLGIAAAHAVLDV--IEE------  316 (425)
T ss_pred             CEEeehhhhc-CCccceEEE---EcHHHHhc------------cCCCCcCCCCCCCHHHHHHHHHHHHH--HHh------
Confidence            4688899999 899999995   77777776            43322233445666666655554421  100      


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccC--CCCCcccccCCcceEEecCCC--------H----HHHHHHHHcccEEEeCC---C
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFSFTGLN--------K----AQSDNMTNKWHVYMTKD---G  440 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~g--~~~~~~~~~~~~g~f~~~~l~--------~----~~~~~ll~~~gI~v~~g---g  440 (467)
                      ....++.+++.+++.+.|+ ++-  .|. +..+... |+++|+.+.        .    .+.+.++ ++|+++.+.   |
T Consensus       317 ~~l~~~~~~~g~~l~~~L~-~l~~~~~~-i~~vrG~-Gl~~~iel~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~g~~~  392 (425)
T PRK07495        317 EDLCERANQLGNRLKQRLA-SLRETVPE-IADIRGP-GFMNAVEFNDADSGLPSAEFANRVRLKAL-EKGLILLTCGVHG  392 (425)
T ss_pred             chHHHHHHHHHHHHHHHHH-HHHhhCCC-eeeeecC-ceEEEEEEecCCCCCccHHHHHHHHHHHH-HCCeEEeecCCCC
Confidence            0222333333444444443 220  111 1112222 777776441        1    1233444 469998664   2


Q ss_pred             ---eEEec-cCChhhHHHHHHHHHHHHHhcC
Q 012238          441 ---RISLA-GLSLAKCEYLADAIIDSYHNVS  467 (467)
Q Consensus       441 ---Ris~~-~~~~~~i~~~~~~l~~~l~~~~  467 (467)
                         ||.-. .++++++++++++|.+++++++
T Consensus       393 ~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~  423 (425)
T PRK07495        393 NVIRFLAPITIQDDVFAEALDILEASILEAS  423 (425)
T ss_pred             CEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence               66533 3488999999999999998764

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.76  E-value=4.6e-16  Score=154.60  Aligned_cols=206  Identities=11%  Similarity=0.036  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCCCeEEee
Q 012238          130 AFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARVPWSEYR  205 (467)
Q Consensus       130 ~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~~~v~  205 (467)
                      .|++.++.+-.+       ++.+++   .+|++|+..+  ++..+.+||+|+++.|.|+++..    .++..|+++..++
T Consensus        68 ~Le~~la~le~~-------~~~v~~---sSG~aAi~~~--l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd  135 (395)
T PRK05967         68 ALCKAIDALEGS-------AGTILV---PSGLAAVTVP--FLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYD  135 (395)
T ss_pred             HHHHHHHHHhCC-------CCEEEE---CcHHHHHHHH--HHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeC
Confidence            566667665322       344544   6689999988  56678899999999999998765    4577898888875


Q ss_pred             eecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhH
Q 012238          206 YYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS  285 (467)
Q Consensus       206 ~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~  285 (467)
                      ..       +.+.++++++   +++++|++++|+||++.   ..++++|+++|+++|+++|+|++|....+-.      +
T Consensus       136 ~~-------~~e~l~~al~---~~TklV~lesPsNP~l~---v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~------p  196 (395)
T PRK05967        136 PE-------IGAGIAKLMR---PNTKVVHTEAPGSNTFE---MQDIPAIAEAAHRHGAIVMMDNTWATPLYFR------P  196 (395)
T ss_pred             CC-------CHHHHHHhcC---cCceEEEEECCCCCCCc---HHHHHHHHHHHHHhCCEEEEECCccCceecC------h
Confidence            41       3477888887   57899999999999764   6778899999999999999999987543221      1


Q ss_pred             HHHHHhcCCeEEEEecCccCcccC-CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHh
Q 012238          286 VRLFATRGMELLVAQSYSKNLGLY-AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVV  364 (467)
Q Consensus       286 ~~~~~~~~~~~i~~~S~SK~~~~~-G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L  364 (467)
                      +    +. .-.+++.|.+|.++-. +...|++   +.+++..++            +...........++.....+..-|
T Consensus       197 l----~~-GaDivv~S~tKy~~Gh~d~~~G~v---~~~~~~~~~------------l~~~~~~~G~~~~p~da~l~~rgl  256 (395)
T PRK05967        197 L----DF-GVDISIHAATKYPSGHSDILLGTV---SANEKCWPQ------------LLEAHGTLGLCAGPDDTYQILRGL  256 (395)
T ss_pred             h----Hc-CCCEEEEecccccCCCCCeeEEEE---EcCHHHHHH------------HHHHHHHcCCCCCHHHHHHHHcCc
Confidence            1    22 2348899999987533 3445655   356665555            332222233345555444333222


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          365 GNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       365 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      .          .+..+.++..++...+.+.|+
T Consensus       257 ~----------Tl~lR~~~~~~na~~lA~~L~  278 (395)
T PRK05967        257 R----------TMGIRLEHHRKSALEIARWLE  278 (395)
T ss_pred             c----------cHHHHHHHHHHHHHHHHHHHH
Confidence            2          244455555666666777776

>TIGR01814 kynureninase kynureninase

Probab=99.76  E-value=4.2e-16  Score=157.75  Aligned_cols=335  Identities=14%  Similarity=0.058  Sum_probs=188.8

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc---CCCCc-CC---CCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER---GENKE-YL---PIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~---~~~~~-Y~---~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (467)
                      ++++.|..+..    + |. ++.+.+++.+.+..   +.... |.   ......+.++.+ ++++.      ++++|++ 
T Consensus        26 ~~~iyld~~a~----g-~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~------~~~~v~~-   91 (406)
T TIGR01814        26 NAVIYLDGNSL----G-LM-PKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLKL-RLVGA------KEDEVVV-   91 (406)
T ss_pred             CCcEEecCCCc----C-cC-cHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhccc-cccCC------CCCcEEE-
Confidence            35677775543    3 33 78888888766532   11011 11   111122222233 34332      3789999 


Q ss_pred             ecCCchhHHHHHHHHHHHhCCC---CEEEEcCCCCcch----HHHHhhCCCCe----EEeeeecCCCCCCChhhHHHHHH
Q 012238          156 QGLSGTGSLRLAAALIERYFPG---AKVLISSPTWGNH----KNIFNDARVPW----SEYRYYDPKTVGLDFEGMIADIK  224 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~~~~~g---d~Vlv~~P~y~~~----~~~~~~~G~~~----~~v~~~~~~~~~~d~~~l~~~l~  224 (467)
                       |.|+|+++++++  ...+.+|   +.|++....|+..    ...++..|+++    +.++.  +.++.+|++.+++.++
T Consensus        92 -~~~~t~~l~~~~--~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~--~~~g~~~~~~l~~~~~  166 (406)
T TIGR01814        92 -MNTLTINLHLLL--ASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEP--REEETLRLEDILDTIE  166 (406)
T ss_pred             -eCCchHHHHHHH--HHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEecc--CCCCccCHHHHHHHHH
Confidence             999999999972  3334454   3688888889763    22446678887    34444  3346689999999886


Q ss_pred             cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCcc
Q 012238          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (467)
Q Consensus       225 ~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  304 (467)
                      ...++++++++++++|.||..++.+   +|+++|+++|+++++|++ +.+.....+.         ....-.+++.|..|
T Consensus       167 ~~~~~t~lv~~~~v~~~tG~~~~~~---~i~~~~~~~g~~~~vD~a-q~~G~~~id~---------~~~gvD~~~~s~hK  233 (406)
T TIGR01814       167 KNGDDIAVILLSGVQYYTGQLFDMA---AITRAAHAKGALVGFDLA-HAVGNVPLDL---------HDWGVDFACWCTYK  233 (406)
T ss_pred             hcCCCeEEEEEeccccccceecCHH---HHHHHHHHcCCEEEEEcc-cccCCccccc---------ccCCCCEEEEcCcc
Confidence            5446789999999999999999855   667779999999999999 5444322211         11133577899999


Q ss_pred             Cc-ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHH-----H------Hhh-ccCccCCCchHHHHHHHHHhCChhhHH
Q 012238          305 NL-GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQ-----L------KRL-ARPMYSNPPVHGARIVANVVGNPALFD  371 (467)
Q Consensus       305 ~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~-----l------~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~~  371 (467)
                      .+ |.||  .| ++  ...+...+.  .+........     .      ... .+.....++..+..++..+|+.   ..
T Consensus       234 ~l~g~pG--~~-l~--v~~~~~~~~--~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~---~~  303 (406)
T TIGR01814       234 YLNAGPG--AG-AF--VHEKHAHTE--RPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDI---FD  303 (406)
T ss_pred             ccCCCCC--eE-EE--Eehhhhhhc--CCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHH---HH
Confidence            76 4455  33 32  122221111  0000000000     0      000 0000112333333333333321   10


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcc-C-CCCCcccccC-----CcceEEe-cCCCHHHHHHHHHcccEEEeCC--C-
Q 012238          372 EWKAEMEMMAGRIKNVRQKLFDSLSAKD-K-SGKDWSFILR-----QIGMFSF-TGLNKAQSDNMTNKWHVYMTKD--G-  440 (467)
Q Consensus       372 ~~~~~l~~~~~~~~~~r~~l~~~l~~~~-g-~~~~~~~~~~-----~~g~f~~-~~l~~~~~~~ll~~~gI~v~~g--g-  440 (467)
                        +..+++.+++.+...+++.+.|+ +. + .+ ++++..+     .+++..+ ...+.+.+.+.|.++||.+...  + 
T Consensus       304 --~~g~~~i~~~~~~l~~~l~~~l~-~~~~~~~-~~~i~~~~~~~~r~~~v~~~~~~~~~~~~~~L~~~gi~v~~~~~~~  379 (406)
T TIGR01814       304 --QAGMEALRKKSLLLTDYLEELIK-ARCGGPP-VLTIITPRDHAQRGCQLSLTHPVPGKAVFQALIKRGVIGDKREPSV  379 (406)
T ss_pred             --hcCHHHHHHHHHHHHHHHHHHHH-hhcCCCC-ceEEeCCCChhhcCCeEEEEecCCHHHHHHHHHHCCEEEeccCCCe
Confidence              12256777888888888888887 53 2 11 1333332     1233322 2334444444445569988654  3 


Q ss_pred             -eEEec-cC-ChhhHHHHHHHHHHHH
Q 012238          441 -RISLA-GL-SLAKCEYLADAIIDSY  463 (467)
Q Consensus       441 -Ris~~-~~-~~~~i~~~~~~l~~~l  463 (467)
                       |||++ .. +++++++++++|++++
T Consensus       380 iRiS~~~~~nt~~did~l~~~l~~~~  405 (406)
T TIGR01814       380 IRVAPVPLYNTFVDVYDAVNVLEEIL  405 (406)
T ss_pred             EEEechhccCCHHHHHHHHHHHHHHh
Confidence             99983 33 7799999999998875

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.76  E-value=2.9e-15  Score=146.95  Aligned_cols=321  Identities=15%  Similarity=0.128  Sum_probs=209.2

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc------CCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER------GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~------~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (467)
                      +.+++||+..+|.-   ... .|.++++..+.+..      +...-++...-..+|.+.+|+|+..       +.-+++ 
T Consensus        38 ~~~~~nf~SNdYLG---La~-~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~-------e~al~f-  105 (388)
T COG0156          38 GRKVLNFCSNDYLG---LAS-HPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGA-------EAALLF-  105 (388)
T ss_pred             CceeEeeeccCccc---ccC-CHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCC-------CcEEEE-
Confidence            45799999988853   333 45566666666533      1112233445578899999999643       334444 


Q ss_pred             ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC-C--CcEE
Q 012238          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-G--GSFI  232 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~--~~~~  232 (467)
                        .+|=.|...+  +-..+.++|.|+.-.-.+....+-++..+++++.+.-       .|++.|++.+++.. .  +.++
T Consensus       106 --~SGy~AN~~~--i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~H-------nD~~~Le~~l~~~~~~~~~~~~  174 (388)
T COG0156         106 --SSGFVANLGL--LSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-------NDLDHLEALLEEARENGARRKL  174 (388)
T ss_pred             --cccchhHHHH--HHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecC-------CCHHHHHHHHHhhhccCCCceE
Confidence              4444444443  3444668898888888888888888999999988865       68899999997631 1  3567


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH-HH-HhcCCeEEEEecCccCcccCC
Q 012238          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR-LF-ATRGMELLVAQSYSKNLGLYA  310 (467)
Q Consensus       233 i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~-~~-~~~~~~~i~~~S~SK~~~~~G  310 (467)
                      |+....-.-.|.+.+.   .+|++++++|+.++++||+|.--.+|.   ....+. .+ ....+..|+++||||.||..|
T Consensus       175 IvtegVfSMdGdiApL---~~l~~L~~ky~a~L~VDEAHa~Gv~G~---~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G  248 (388)
T COG0156         175 IVTEGVFSMDGDIAPL---PELVELAEKYGALLYVDEAHAVGVLGP---NGRGLAEHFGLEPEEVDIIVGTLGKALGSSG  248 (388)
T ss_pred             EEEeccccCCCCcCCH---HHHHHHHHHhCcEEEEEccccccccCC---CCccHHHHhCCCCccceEEEEEchhhhcccC
Confidence            7767766677876665   577777999999999999988666663   111221 22 122445899999999999777


Q ss_pred             CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc-cC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238          311 ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM-YS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  388 (467)
Q Consensus       311 ~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r  388 (467)
                         ||+   +++..+++.            +....++. ++ +.|+....++..+++.       .+...+.+++++++.
T Consensus       249 ---g~v---~g~~~~~d~------------L~~~ar~~ifStalpP~~aaa~~~al~~-------l~~~~~~r~~L~~~~  303 (388)
T COG0156         249 ---GYI---AGSAALIDY------------LRNRARPFIFSTALPPAVAAAALAALRI-------LEEGPERRERLQELA  303 (388)
T ss_pred             ---cee---eCcHHHHHH------------HHHhCCceeccCCCCHHHHHHHHHHHHH-------HHhCHHHHHHHHHHH
Confidence               887   599998887            55443433 33 3333333333333321       122346777788888


Q ss_pred             HHHHHHhhhccCCCCCcccccCCcceE-EecCC---CHHHHHHHHHcccEEEeCC-------C----eEEecc-CChhhH
Q 012238          389 QKLFDSLSAKDKSGKDWSFILRQIGMF-SFTGL---NKAQSDNMTNKWHVYMTKD-------G----RISLAG-LSLAKC  452 (467)
Q Consensus       389 ~~l~~~l~~~~g~~~~~~~~~~~~g~f-~~~~l---~~~~~~~ll~~~gI~v~~g-------g----Ris~~~-~~~~~i  452 (467)
                      ..+...++ ..++    ...+...... +.++-   ..+....++++ ||++.+-       |    ||+++. .++++|
T Consensus       304 ~~~~~~~~-~~~~----~~~~s~s~I~pv~~gd~~~a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I  377 (388)
T COG0156         304 AFFRSLLK-ALGL----VLLPSESPIIPVILGDEERALEASRALLEE-GIYVSAIRPPTVPKGTARLRITLTAAHTEEDI  377 (388)
T ss_pred             HHHHHHHH-hcCC----ccCCCCCCeeeeEeCCHHHHHHHHHHHHHC-CeeEeeecCCCCCCCcceEEEEecCCCCHHHH
Confidence            88886666 6663    3333333322 33343   23446677776 9998664       3    888753 488999


Q ss_pred             HHHHHHHHHH
Q 012238          453 EYLADAIIDS  462 (467)
Q Consensus       453 ~~~~~~l~~~  462 (467)
                      +++++++.++
T Consensus       378 ~~l~~~l~~~  387 (388)
T COG0156         378 DRLAEALSEV  387 (388)
T ss_pred             HHHHHHHHhh
Confidence            9999998765

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.75  E-value=1.5e-15  Score=150.83  Aligned_cols=182  Identities=24%  Similarity=0.127  Sum_probs=128.6

Q ss_pred             HHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCC
Q 012238          109 AENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKVLISSPTW  187 (467)
Q Consensus       109 a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~~~gd~Vlv~~P~y  187 (467)
                      ++.+.+..+.   |.......++++.+++++..        +++++  +.+|++++.++  +... +.+||+|+++.++|
T Consensus         4 ~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~--------~~~~~--~~sgt~al~~~--l~~l~~~~gd~vl~~~~~~   68 (352)
T cd00616           4 AVEEVLDSGW---LTLGPKVREFEKAFAEYLGV--------KYAVA--VSSGTAALHLA--LRALGIGPGDEVIVPSFTF   68 (352)
T ss_pred             HHHHHHHcCC---ccCCHHHHHHHHHHHHHhCC--------CeEEE--ECCHHHHHHHH--HHHcCCCCCCEEEeCCcch
Confidence            4444444432   33445688999999999642        35666  78999999987  3333 46999999999999


Q ss_pred             cchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEE
Q 012238          188 GNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF  267 (467)
Q Consensus       188 ~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~  267 (467)
                      ..+...++..|++++.++++ +.++.+|++.+++.++   +++++++++   ||+|...+.   ++|.++|+++|+++|+
T Consensus        69 ~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~---~~~~~v~~~---~~~G~~~~~---~~i~~l~~~~~i~li~  138 (352)
T cd00616          69 VATANAILLLGATPVFVDID-PDTYNIDPELIEAAIT---PRTKAIIPV---HLYGNPADM---DAIMAIAKRHGLPVIE  138 (352)
T ss_pred             HHHHHHHHHcCCeEEEEecC-CCcCCcCHHHHHHhcC---cCCeEEEEE---CCCCCcCCH---HHHHHHHHHcCCeEEE
Confidence            99999999999999999984 3467899999999885   566777764   589988765   4667779999999999


Q ss_pred             eccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCc--cCcccCCCccceEEEecCCHHHHhh
Q 012238          268 DVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       268 Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                      |+++.......   .. .+    .. ...+.+.|++  |.++  +.+.|+++  +.++++.+.
T Consensus       139 D~a~~~g~~~~---~~-~~----~~-~~d~~~~S~~~~K~~~--~~~gg~~~--~~~~~~~~~  188 (352)
T cd00616         139 DAAQALGATYK---GR-KV----GT-FGDAGAFSFHPTKNLT--TGEGGAVV--TNDEELAER  188 (352)
T ss_pred             ECCCCCCCeEC---CE-Ec----cc-CcceeEEcCCCCCCCc--ccCceEEE--ECCHHHHHH
Confidence            99975332110   00 00    00 1235667766  8774  33457774  566777765

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.75  E-value=3e-15  Score=150.21  Aligned_cols=320  Identities=12%  Similarity=0.026  Sum_probs=191.4

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-CCC-----CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GEN-----KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~~~-----~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      .+.++|+...|.   +... .|.++++..+.+.+ +..     .-++...-..+|.+.+|+++..        +..++  
T Consensus       102 r~~l~FsSndYL---GL~~-~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~--------e~all--  167 (476)
T PLN02955        102 KKLLLFSGNDYL---GLSS-HPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKK--------EDCLV--  167 (476)
T ss_pred             ceEEEeeccCcc---CCCC-CHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCC--------CcEEE--
Confidence            368999988884   3333 66777777776643 110     1111122347899999999643        24444  


Q ss_pred             cCCchhHHHHHHHHHHH------------hCCCCEEEEcCCCCcchHHHHhhC----CCCeEEeeeecCCCCCCChhhHH
Q 012238          157 GLSGTGSLRLAAALIER------------YFPGAKVLISSPTWGNHKNIFNDA----RVPWSEYRYYDPKTVGLDFEGMI  220 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~------------~~~gd~Vlv~~P~y~~~~~~~~~~----G~~~~~v~~~~~~~~~~d~~~l~  220 (467)
                      .++|-.|...+...+..            ..++|.|+.-.-.+.....-++..    +++++.++.       .|++.|+
T Consensus       168 ~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~H-------ND~~~Le  240 (476)
T PLN02955        168 CPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRH-------CDMYHLN  240 (476)
T ss_pred             ECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCC-------CCHHHHH
Confidence            56676665554222210            124455666556666666666665    456666554       5899999


Q ss_pred             HHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEe
Q 012238          221 ADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (467)
Q Consensus       221 ~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  300 (467)
                      +.++..+.+..+|++...-++.|.+.+.+   +|.++|++||.++|+||+|..+..+.....  ....+--..+..|+++
T Consensus       241 ~~L~~~~~~~~~Vv~EgV~SmdGdiapL~---eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G--~~e~~g~~~di~ii~~  315 (476)
T PLN02955        241 SLLSSCKMKRKVVVTDSLFSMDGDFAPME---ELSQLRKKYGFLLVIDDAHGTFVCGENGGG--VAEEFNCEADVDLCVG  315 (476)
T ss_pred             HHHHhCCCCceEEEEeCCCCCCCCcCCHH---HHHHHHHHcCcEEEEcccccCceecCCCCc--HHHHhCCCCCCcEEEE
Confidence            99976555556777777889999998855   666668999999999999987776631111  1112211246789999


Q ss_pred             cCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc-cCCCch-HHHHHHHHHhCChhhHHHHHHHHH
Q 012238          301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM-YSNPPV-HGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~-~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                      ||||.+|..|   |++   ++++++++.            ++...+.. ++...+ ....++...+.   +.   .. -.
T Consensus       316 TLsKA~G~~G---Gfi---~gs~~~~~~------------l~~~~~~~ifStalpp~~aaa~laal~---l~---~~-~~  370 (476)
T PLN02955        316 TLSKAAGCHG---GFI---ACSKKWKQL------------IQSRGRSFIFSTAIPVPMAAAAYAAVV---VA---RK-EK  370 (476)
T ss_pred             eCccchhccC---cee---ecHHHHHHH------------HHHhCCCCeecccccHHHHHHHHHHHH---HH---hc-CH
Confidence            9999988766   887   477877776            55443332 332222 22222222221   10   00 11


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcce-EEecCCCH---HHHHHHHHcccEEEeCC-------C----eEE
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGM-FSFTGLNK---AQSDNMTNKWHVYMTKD-------G----RIS  443 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~-f~~~~l~~---~~~~~ll~~~gI~v~~g-------g----Ris  443 (467)
                      ..+++++++.+++.+.    .|+    ..  + ... .++++...   ++.++|++ +||++.+-       |    ||+
T Consensus       371 ~~r~~L~~n~~~fr~~----~G~----~~--~-sPI~pI~ig~~~~a~~~~~~L~~-~Gi~v~~i~yPtVP~g~~rLRi~  438 (476)
T PLN02955        371 WRRKAIWERVKEFKAL----SGV----DI--S-SPIISLVVGNQEKALKASRYLLK-SGFHVMAIRPPTVPPNSCRLRVT  438 (476)
T ss_pred             HHHHHHHHHHHHHHHh----cCC----CC--C-CCEEEEEeCCHHHHHHHHHHHHH-CCCEEEEECCCCCCCCCceEEEe
Confidence            3445565655555542    232    22  1 222 34455322   33556665 59988643       2    888


Q ss_pred             ecc-CChhhHHHHHHHHHHHHHh
Q 012238          444 LAG-LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       444 ~~~-~~~~~i~~~~~~l~~~l~~  465 (467)
                      +.. .+++++++++++|.++...
T Consensus       439 lsA~Ht~edId~lv~~L~~~~~~  461 (476)
T PLN02955        439 LSAAHTTEDVKKLITALSSCLDF  461 (476)
T ss_pred             eCCCCCHHHHHHHHHHHHHHHhh
Confidence            753 4889999999999988654

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.75  E-value=1.6e-15  Score=154.53  Aligned_cols=341  Identities=11%  Similarity=0.032  Sum_probs=194.0

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCc--CCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE--YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~--Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.||+..|..-..-|.  -.|.|.+++.+.++......  ........+|-+.++++....      .+.+++  +++
T Consensus        42 G~~ylD~~~g~~~~~lGh--~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~------~~~v~f--~~S  111 (433)
T PRK08117         42 GKEYLDFTSGIAVANVGH--RHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGG------LDCFFF--SNS  111 (433)
T ss_pred             CCEEEECCcchhhccCCC--CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCC------CCEEEE--eCc
Confidence            357899988753222232  36788888888775421111  112334455666666653111      357888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-hhCC--------C-----CeEEeeeecCCC--CC--------CC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDAR--------V-----PWSEYRYYDPKT--VG--------LD  215 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~-~~~G--------~-----~~~~v~~~~~~~--~~--------~d  215 (467)
                      |++|...+.++...+....+|+...-+|....... ...+        .     .+..+|..+...  .+        .|
T Consensus       112 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (433)
T PRK08117        112 GAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLEC  191 (433)
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHH
Confidence            99999998654333433467888888886643221 1111        0     112233211000  00        15


Q ss_pred             hhhHHHHHHc--CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc
Q 012238          216 FEGMIADIKA--APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR  292 (467)
Q Consensus       216 ~~~l~~~l~~--~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~  292 (467)
                      ++.+++.+++  .+.+..++++-....-.|.+ .+.+.+++|.++|++||+++|+||+|.+|...+   ..+....+ .-
T Consensus       192 ~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G---~~~~~~~~-gv  267 (433)
T PRK08117        192 LRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTG---EWFAAQTF-GV  267 (433)
T ss_pred             HHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccc---cchhHhhc-CC
Confidence            5667776653  22455566666555556665 478889999999999999999999999875432   11111111 11


Q ss_pred             CCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHH
Q 012238          293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDE  372 (467)
Q Consensus       293 ~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~  372 (467)
                      .++   +.+|||.++ .|+++|+++   +++++++.            +.......+.+.+.+++.++...|+.-  .  
T Consensus       268 ~pD---i~t~sK~lg-~G~pigav~---~~~~i~~~------------~~~~~~~~T~~~np~~~aaa~a~L~~l--~--  324 (433)
T PRK08117        268 VPD---IMTIAKGIA-SGLPLSAVV---ASKELMEQ------------WPLGSHGTTFGGNPVACAAALATLEVI--K--  324 (433)
T ss_pred             CCC---Eeehhhhcc-CCCcceeEE---EcHHHHhh------------ccCCCCCCCCCcCHHHHHHHHHHHHHH--H--
Confidence            122   469999999 899999985   77777766            432222233355667777776666421  0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccC--CCCCcccccCCcceEEecCC-------C---HHHHHHHHHcccEEEeCCC
Q 012238          373 WKAEMEMMAGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFSFTGL-------N---KAQSDNMTNKWHVYMTKDG  440 (467)
Q Consensus       373 ~~~~l~~~~~~~~~~r~~l~~~l~~~~g--~~~~~~~~~~~~g~f~~~~l-------~---~~~~~~ll~~~gI~v~~gg  440 (467)
                        +  +...++++++.+++.+.|+ ++.  .+. +.. .+..|.++.+.+       +   ...+.+.+.++||++.+.|
T Consensus       325 --~--~~l~~~~~~~g~~l~~~L~-~l~~~~~~-~~~-vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g  397 (433)
T PRK08117        325 --E--EKLLDNANEMGAYALERLE-VLKEKHPV-IGD-VRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCG  397 (433)
T ss_pred             --h--ccHHHHHHHHHHHHHHHHH-HHHhcCCc-eee-eecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecC
Confidence              0  1233344444455555554 331  111 111 223344433222       1   1223333445699886632


Q ss_pred             ------eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          441 ------RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 ------Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                            ||+.. ..+++++++++++|.++++++
T Consensus       398 ~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~  430 (433)
T PRK08117        398 NAGNVLRMIPPLTVTKEEIDEGLDILDEALTEY  430 (433)
T ss_pred             CCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence                  77752 348999999999999998764

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.74  E-value=2e-15  Score=151.57  Aligned_cols=192  Identities=18%  Similarity=0.072  Sum_probs=134.4

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-hCCCCEEE
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKVL  181 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~~~gd~Vl  181 (467)
                      .+...+++.+.+..+.   |....+..+||+++++++...        +.++  ++||++|+.++  +... +.+||+|+
T Consensus         9 ~~~~~~~v~~~~~~~~---~~~g~~~~~le~~la~~~g~~--------~~v~--~~sgt~al~~~--l~al~~~~Gd~Vi   73 (380)
T TIGR03588         9 DQDDIDAVVEVLKSDF---LTQGPTVPAFEEALAEYVGAK--------YAVA--FNSATSALHIA--CLALGVGPGDRVW   73 (380)
T ss_pred             CHHHHHHHHHHHhcCC---ccCChhHHHHHHHHHHHHCCC--------eEEE--EcCHHHHHHHH--HHHcCCCCCCEEE
Confidence            4555777777665432   334456889999999997543        3444  57899999997  3333 56999999


Q ss_pred             EcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC-CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q 012238          182 ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE  260 (467)
Q Consensus       182 v~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~  260 (467)
                      ++.|+|..+...++..|++++.++++ ++++.+|++.+++.+++.+ ++++++++   .|++|...+   +++|.++|++
T Consensus        74 v~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~d~~~l~~~i~~~~~~~t~~v~~---~~~~G~~~~---~~~i~~l~~~  146 (380)
T TIGR03588        74 TTPITFVATANCALYCGAKVDFVDID-PDTGNIDEDALEKKLAAAKGKLPKAIVP---VDFAGKSVD---MQAIAALAKK  146 (380)
T ss_pred             eCCcchHHHHHHHHHcCCEEEEEecC-CCcCCcCHHHHHHHhhcccCCCceEEEE---eCCCCccCC---HHHHHHHHHH
Confidence            99999999999999999999999985 3467899999999997321 24566664   467898765   5677777999


Q ss_pred             cCCeeEEeccCCCCC-CCCCCCChhHHHHHHhcCCeEEEEecCc--cCcccCCCccceEEEecCCHHHHhh
Q 012238          261 KNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       261 ~~~~li~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                      +|++||+|+++.... ++.   .  .+.. ...  ..+.+.||+  |.++. | ..|+++  +.++++.++
T Consensus       147 ~~~~lI~D~a~a~g~~~~~---~--~~g~-~~~--~d~~~~S~~~~K~~~~-~-~GG~v~--~~~~~~~~~  205 (380)
T TIGR03588       147 HGLKIIEDASHALGAEYGG---K--PVGN-CRY--ADATVFSFHPVKIITT-A-EGGAVT--TNDEELAER  205 (380)
T ss_pred             cCCEEEEECCCcccCccCC---E--eCCC-ccc--cceEEEecCCCCcccc-c-CceEEE--ECCHHHHHH
Confidence            999999999976432 221   1  1100 011  245566665  88864 3 345554  677877776

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.74  E-value=2.4e-15  Score=152.51  Aligned_cols=167  Identities=16%  Similarity=0.051  Sum_probs=121.9

Q ss_pred             hHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHH-------HhCCCCEEEEcCCCCcchHHHHhhCCCC
Q 012238          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE-------RYFPGAKVLISSPTWGNHKNIFNDARVP  200 (467)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~-------~~~~gd~Vlv~~P~y~~~~~~~~~~G~~  200 (467)
                      ..+|++++|+++..        +++++  +++|++++.++...+.       .+.|||+|+++.|+|..+...+...|++
T Consensus        65 ~~~fe~~lA~~~g~--------~~~v~--~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~  134 (438)
T PRK15407         65 NDAFEKKLAEFLGV--------RYALL--VNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLV  134 (438)
T ss_pred             HHHHHHHHHHHhCC--------CeEEE--ECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCE
Confidence            57899999999743        35777  8999999998733221       2468999999999999999999999999


Q ss_pred             eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCC-CCCC
Q 012238          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA-SGSL  279 (467)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~-~~~~  279 (467)
                      ++.++++ ..++.+|++.+++.+.   +++++|++++   ++|..   .++++|.++|+++|++||+|+++.... +.+ 
T Consensus       135 pv~vdvd-~~~~~id~~~le~~i~---~~tkaVi~~~---~~G~p---~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g-  203 (438)
T PRK15407        135 PVFVDVE-LPTYNIDASLLEAAVS---PKTKAIMIAH---TLGNP---FDLAAVKAFCDKHNLWLIEDNCDALGSTYDG-  203 (438)
T ss_pred             EEEEecC-CCcCCcCHHHHHHHcC---cCCeEEEEeC---CCCCh---hhHHHHHHHHHHCCCEEEEECccchhhhcCC-
Confidence            9999885 3578899999999886   5677777654   45653   457788888999999999999975432 211 


Q ss_pred             CCChhHHHHHHhcCCeEEEEecC--ccCcccCCCccceEEEecCCHHHHhh
Q 012238          280 DNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                         . .+   -..+  .+.+.||  +|.+. .|. -|+++  +.++++.++
T Consensus       204 ---~-~~---G~~g--d~~~fSf~~~k~~~-~ge-GG~l~--t~d~~l~~~  241 (438)
T PRK15407        204 ---R-MT---GTFG--DIATLSFYPAHHIT-MGE-GGAVF--TNDPLLKKI  241 (438)
T ss_pred             ---e-ee---eccC--ceEEEeCCCCCCcc-ccC-ceEEE--ECCHHHHHH
Confidence               0 01   0112  3445555  46665 455 37775  788888776

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.73  E-value=1.8e-15  Score=146.44  Aligned_cols=202  Identities=14%  Similarity=0.067  Sum_probs=151.8

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc----CCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceee
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER----GEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~----~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      .+.+.+.|..|..      .+.++.|.+++......    .+.  ..|-+..+.++.|+.+|++++..      +.+|++
T Consensus        40 ~~~~~vyld~~at------~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd------~~dIiF  107 (428)
T KOG1549|consen   40 HGTRPVYLDNQAT------GPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINAD------PSDIVF  107 (428)
T ss_pred             CCCccEEEecCcC------CCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCC------CCcEEE
Confidence            3456777776643      44588899998887732    221  22334566899999999998776      667988


Q ss_pred             eecCCchhHHHHHHHHHHHhCCCC----EEEEcCCCCcchHH---HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC
Q 012238          155 VQGLSGTGSLRLAAALIERYFPGA----KVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP  227 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~~gd----~Vlv~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~  227 (467)
                        |.|+|++++++++-. ...++|    .|+...-.|+....   .++..|++++.+|+.  +++.+|.+.+++.++   
T Consensus       108 --ts~ATEs~Nlvl~~v-~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~--~~~~~d~~~~~~~i~---  179 (428)
T KOG1549|consen  108 --TSGATESNNLVLKGV-ARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVE--DSGLVDISKLREAIR---  179 (428)
T ss_pred             --eCCchHHHHHHHHHh-hccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccC--ccccccHHHHHHhcC---
Confidence              999999999982221 123677    89988877766544   455789999999993  567799999999998   


Q ss_pred             CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       228 ~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      ++++++.+...+|-+|+++|.+   +|+++|+++++.+++|.+ |....-  +.|.       +.-.-.++..|.+|.||
T Consensus       180 ~~T~lv~I~~Vnn~~gv~~Pv~---EI~~icr~~~v~v~~DaA-QavG~i--~vDV-------~eln~D~~s~s~HK~yg  246 (428)
T KOG1549|consen  180 SKTRLVSIMHVNNEIGVLQPVK---EIVKICREEGVQVHVDAA-QAVGKI--PVDV-------QELNADFLSISAHKIYG  246 (428)
T ss_pred             CCceEEEEEecccCccccccHH---HHHHHhCcCCcEEEeehh-hhcCCc--cccH-------HHcCchheeeecccccC
Confidence            7999999999999999999976   666679999999999999 444322  1221       12234567888999999


Q ss_pred             cCCCccceEE
Q 012238          308 LYAERIGAMN  317 (467)
Q Consensus       308 ~~G~RiG~~~  317 (467)
                      ++|  +|+++
T Consensus       247 p~~--iGaLY  254 (428)
T KOG1549|consen  247 PPG--IGALY  254 (428)
T ss_pred             CCc--ceEEE
Confidence            999  89998

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.73  E-value=1.4e-14  Score=146.47  Aligned_cols=323  Identities=15%  Similarity=0.141  Sum_probs=187.3

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcC------CCCcchHHHHH----HHHHHHhCCCCcccccCce
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY------LPIEGLAAFNK----VTAELLFGADNSVLKEQRV  152 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y------~~~~G~~~lr~----aia~~l~~~~~~~~~~~~i  152 (467)
                      .+.|||-..++       +++|.+++++...+...+..+|      .......+|.+    .++++++..        ..
T Consensus        28 ~~~~~l~~sen-------~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~--------~a   92 (416)
T PRK13034         28 QDHLELIASEN-------FTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCD--------YA   92 (416)
T ss_pred             hcCeeeccccc-------CCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCC--------ce
Confidence            36788886654       2478899988887522111211      11344677777    888886432        33


Q ss_pred             -eeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcch-HHHHhh--CCCCe--EEeeeecCCCCCCChhhHHHHHHcC
Q 012238          153 -ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH-KNIFND--ARVPW--SEYRYYDPKTVGLDFEGMIADIKAA  226 (467)
Q Consensus       153 -~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~-~~~~~~--~G~~~--~~v~~~~~~~~~~d~~~l~~~l~~~  226 (467)
                       +.  +++|+.|+..+  +.+.+.|||+|++...+|... ..-++.  .+...  ..++.+ ..++.+|++.+++.++. 
T Consensus        93 lv~--~~SG~~A~~~~--l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~d~~~le~~l~~-  166 (416)
T PRK13034         93 NVQ--PHSGSQANGAV--YLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVD-RLTGLIDYDEVEELAKE-  166 (416)
T ss_pred             EEe--cCCcHHHHHHH--HHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEcccc-cccCCcCHHHHHHHHhh-
Confidence             33  58999999988  556678999999999988652 211111  11111  233332 33567999999998864 


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc
Q 012238          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (467)
Q Consensus       227 ~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (467)
                       .++++|++..+.  +|...+   +.+|.++|+++|+++|+|++...-..+.. ...      .....-.++++|++|.+
T Consensus       167 -~~~klVi~~~~~--~g~~~d---l~~l~~la~~~g~~livD~Aha~G~~~~g-~~~------~~~~~~Di~~~s~~K~l  233 (416)
T PRK13034        167 -HKPKLIIAGFSA--YPRELD---FARFREIADEVGALLMVDMAHIAGLVAAG-EHP------NPFPHAHVVTTTTHKTL  233 (416)
T ss_pred             -cCCeEEEECCCc--cccccC---HHHHHHHHHHcCCEEEEeCcccccCcccC-CCC------CCCCCceEEEEeCcccC
Confidence             346777765544  355444   55677779999999999999543222210 000      01122468899999999


Q ss_pred             ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc-cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238          307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  385 (467)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~  385 (467)
                      +.+.  -|+++  +.++++...            ++...... ..+.+.....++...+.  ..   ...+..+.++++.
T Consensus       234 ~g~~--GG~v~--~~~~~~~~~------------~~~~~~~~~~~~~~~~~~aa~~~al~--~~---~~~~~~~~~~~l~  292 (416)
T PRK13034        234 RGPR--GGMIL--TNDEEIAKK------------INSAVFPGLQGGPLMHVIAAKAVAFG--EA---LQPEFKTYAKQVI  292 (416)
T ss_pred             CCCC--CeEEE--ECcHHHHHH------------HHhhcCCcccCCccHHHHHHHHHHHH--HH---hChhHHHHHHHHH
Confidence            4332  25553  445544443            33322211 12222222222221111  11   0011235568888


Q ss_pred             HHHHHHHHHhhhccCCCCCccccc--CCcceE-EecC---CCHHHHHHHHHcccEEEeC----------C---C-eEEec
Q 012238          386 NVRQKLFDSLSAKDKSGKDWSFIL--RQIGMF-SFTG---LNKAQSDNMTNKWHVYMTK----------D---G-RISLA  445 (467)
Q Consensus       386 ~~r~~l~~~l~~~~g~~~~~~~~~--~~~g~f-~~~~---l~~~~~~~ll~~~gI~v~~----------g---g-Ris~~  445 (467)
                      ++.++|.+.|+ +.|+    +...  ++.... +.++   .+...+.+.|++.||++..          .   + |++..
T Consensus       293 ~~a~~l~~~L~-~~G~----~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~  367 (416)
T PRK13034        293 ANAQALAEVLK-ERGY----DLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTP  367 (416)
T ss_pred             HHHHHHHHHHH-HcCC----EeccCCCCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcH
Confidence            88999999998 7774    4432  222222 2222   2556665666777999874          1   2 77643


Q ss_pred             -----cCChhhHHHHHHHHHHHHHh
Q 012238          446 -----GLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       446 -----~~~~~~i~~~~~~l~~~l~~  465 (467)
                           .++++++++++++|.+++.+
T Consensus       368 ~~t~~~~~~~di~~l~~~l~~~~~~  392 (416)
T PRK13034        368 AGTTRGFGEAEFREIANWILDVLDD  392 (416)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHhc
Confidence                 34689999999999988764

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.73  E-value=3.8e-15  Score=150.82  Aligned_cols=156  Identities=17%  Similarity=0.101  Sum_probs=120.0

Q ss_pred             cchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcch----HHHHhhCCCCe
Q 012238          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH----KNIFNDARVPW  201 (467)
Q Consensus       126 ~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~----~~~~~~~G~~~  201 (467)
                      .-..+|++.+|++....        ..++  +++|++|+.++  +...+.|||+|+++.+.|...    ...++..|+++
T Consensus        63 p~~~~le~~lA~l~g~~--------~al~--~~SG~~Ai~~a--l~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v  130 (427)
T PRK05994         63 PTNAVLEERVAALEGGT--------AALA--VASGHAAQFLV--FHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQV  130 (427)
T ss_pred             ccHHHHHHHHHHHhCCC--------cEEE--EcCHHHHHHHH--HHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEE
Confidence            34678899999996432        3445  69999999987  455678999999999999854    33467789988


Q ss_pred             EEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012238          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (467)
Q Consensus       202 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~  281 (467)
                      +.++.       .|++.+++.++   ++++++++++|+||||.+.+.   ++|+++|+++|+++|+|+++......    
T Consensus       131 ~~vd~-------~d~~~l~~ai~---~~tklV~vesp~NptG~v~dl---~~I~~la~~~gi~livD~a~a~~~~~----  193 (427)
T PRK05994        131 RWADA-------DDPASFERAIT---PRTKAIFIESIANPGGTVTDI---AAIAEVAHRAGLPLIVDNTLASPYLI----  193 (427)
T ss_pred             EEECC-------CCHHHHHHhcC---cCCeEEEEECCCCCCCeecCH---HHHHHHHHHcCCEEEEECCccccccC----
Confidence            88765       37889998887   578899999999999999875   57777799999999999997632211    


Q ss_pred             ChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                      .  ++    +. .-.+++.|++|.++-+|-.+|.++
T Consensus       194 ~--pl----~~-gaDivv~S~tK~lgg~~~~~gG~v  222 (427)
T PRK05994        194 R--PI----EH-GADIVVHSLTKFLGGHGNSMGGII  222 (427)
T ss_pred             C--cc----cc-CCcEEEEcCccccCCCCCcEEEEE
Confidence            1  11    11 234889999999998887788876

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.72  E-value=1.8e-14  Score=140.23  Aligned_cols=191  Identities=19%  Similarity=0.094  Sum_probs=136.7

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEE
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI  182 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv  182 (467)
                      .+...+++.+.+..++. .  .-.-..+|.++++++++.+        +.+.  +++||.|+++++..+. +.|||.|++
T Consensus        14 ~~~e~~~v~~vl~sg~i-~--~G~~v~~FE~~~ae~~G~k--------~ava--~~sgT~AL~laL~al~-ig~GDeVI~   79 (374)
T COG0399          14 GEEELAAVQEVLKSGWL-T--GGPFVRRFEQAFAEYLGVK--------YAVA--VSSGTAALHLALLALA-IGPGDEVIV   79 (374)
T ss_pred             chHHHHHHHHHHHcCCe-e--cChHHHHHHHHHHHHhCCC--------eEEE--ecChHHHHHHHHHhcC-CCCCCEEEe
Confidence            56677777787776552 2  2334789999999997543        5666  7999999999843333 679999999


Q ss_pred             cCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 012238          183 SSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN  262 (467)
Q Consensus       183 ~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~  262 (467)
                      ++-+|....+.+-..|++++.++++ ++++.+|++.++++|+   +++++|+..+-.   |...   ++++|.++|++||
T Consensus        80 ps~TfvATan~i~~~Ga~PVFvDid-~~T~nid~~~ie~aIt---~~tKAIipVhl~---G~~~---dm~~i~~la~~~~  149 (374)
T COG0399          80 PSFTFVATANAVLLVGAKPVFVDID-PDTLNIDPDLIEAAIT---PRTKAIIPVHLA---GQPC---DMDAIMALAKRHG  149 (374)
T ss_pred             cCCchHHHHHHHHHcCCeEEEEecC-CcccCCCHHHHHHHcc---cCCeEEEEehhc---cCCC---CHHHHHHHHHHcC
Confidence            9999999999999999999999995 5678899999999999   557777655432   5544   4557777799999


Q ss_pred             CeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhh
Q 012238          263 HIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       263 ~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                      ++||+|.+. .+...   .....   .-..++-.++.+=-+|.+. +| --|.+  ++.++++.++
T Consensus       150 l~vIEDaAq-a~Ga~---y~gk~---vGt~Gd~~~fSF~~~K~it-tg-EGGav--~tnd~ela~k  204 (374)
T COG0399         150 LPVIEDAAQ-AHGAT---YKGKK---VGSFGDIGAFSFHATKNLT-TG-EGGAV--VTNDEELAEK  204 (374)
T ss_pred             CeEEEEcch-hccCe---ecCcc---cccccceEEEEecCCCCcc-cc-CceEE--EeCCHHHHHH
Confidence            999999993 33321   01000   1112223333344468887 55 34555  4899999887

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.72  E-value=1e-14  Score=137.73  Aligned_cols=313  Identities=18%  Similarity=0.083  Sum_probs=192.9

Q ss_pred             chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEE
Q 012238          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL  181 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vl  181 (467)
                      +.|.+++++.+.-. .....|+..+-..++.+.+++.+..        +.+++  +.+||++..++  +...+.||+.|+
T Consensus        12 ~~~~m~eam~~a~~-~~~~~YG~D~~~~~~e~~~ae~~g~--------~a~~F--v~sGT~aN~la--l~~~~~~~~~vi   78 (342)
T COG2008          12 PTPEMREALAAANA-VGDDVYGEDPTTNALEQRIAELFGK--------EAALF--VPSGTQANQLA--LAAHCQPGESVI   78 (342)
T ss_pred             CCHHHHHHHHhccc-cCCCCCCCCHHHHHHHHHHHHHhCC--------ceEEE--ecCccHHHHHH--HHHhcCCCCeEE
Confidence            37889999888743 3457888888888888888888533        36777  89999999998  566678999999


Q ss_pred             EcCCCCcchHH--HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc----CCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012238          182 ISSPTWGNHKN--IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA----APGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (467)
Q Consensus       182 v~~P~y~~~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~----~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~  255 (467)
                      +..-.+....+  ..+.++ ....++..+..++.++++.++..+..    +.+.+.+++ -+.+|--|++||.+++++|.
T Consensus        79 ~~~~aHi~~~E~Ga~~~~~-~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~-e~~~te~GtVy~l~el~~i~  156 (342)
T COG2008          79 CHETAHIYTDECGAPEFFG-GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVL-ENTATEGGTVYPLDELEAIS  156 (342)
T ss_pred             EeccccceecccCcHHHHc-CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEE-eeccCCCceecCHHHHHHHH
Confidence            98866643322  223332 23444444456788999999998874    223344444 44455779999999999999


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHH
Q 012238          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVI  335 (467)
Q Consensus       256 ~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~  335 (467)
                      ++|+++|+.|..|.+--.-..-....+..   .+ ..+ -.++..++||..+.|+   |.++  .++.+++++       
T Consensus       157 ~~~k~~~l~LHmDGAR~~nA~valg~~~~---~~-~~~-~D~v~~~~tK~g~~~~---gAiv--~gn~~~~~~-------  219 (342)
T COG2008         157 AVCKEHGLPLHMDGARLANALVALGVALK---TI-KSY-VDSVSFCLTKGGGAPV---GAIV--FGNRDFAKR-------  219 (342)
T ss_pred             HHHHHhCCceeechHHHHHHHHHcCCCHH---HH-Hhh-CCEEEEecccCCccee---eeEE--EcCHHHHHH-------
Confidence            99999999999999832211110111121   12 122 2355667899988774   8885  699999988       


Q ss_pred             HHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCCCCCcccccCCcce
Q 012238          336 QVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR-IKNVRQKLFDSLSAKDKSGKDWSFILRQIGM  414 (467)
Q Consensus       336 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~-~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~  414 (467)
                       +....++.... .+ -..+.......+|++.-    |     ...++ -.++...|.+.+++..|+    +...|.-..
T Consensus       220 -a~~~rK~~Ggl-~~-k~r~laA~~~~~l~~~~----~-----~~~~~Han~mA~~La~~~~~~~G~----~~~~~~~tN  283 (342)
T COG2008         220 -ARRWRKRAGGL-MR-KARFLAAQGLYALEDDV----W-----RLAADHANAMAARLAEGLEAKPGV----KLAFPVETN  283 (342)
T ss_pred             -HHHHHHHhccc-Hh-hhhHHHHHHHHHHhccH----H-----HHHHHHHHHHHHHHHHhhhhcCCc----eeccCCccc
Confidence             44422222221 11 11122223333444431    1     11122 223356677777623353    444443333


Q ss_pred             EEecCCCHHHHH-----HHHHcccEEEeCCC---eEE--eccCChhhHHHHHHHHHHHH
Q 012238          415 FSFTGLNKAQSD-----NMTNKWHVYMTKDG---RIS--LAGLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       415 f~~~~l~~~~~~-----~ll~~~gI~v~~gg---Ris--~~~~~~~~i~~~~~~l~~~l  463 (467)
                      .+|+.++....+     ..+...|+.+.+++   |+.  +.. ++++++.++..+++++
T Consensus       284 ~vf~~l~~~~i~~l~~~~~~~~~~~~~~~~~~~vRfvts~a~-~~edv~~~~~~~~~~~  341 (342)
T COG2008         284 MVFVRLPESAIEALRLAGALFYRGVLIGAHGEIVRFVTSWAT-SEEDVDELVAAIKALL  341 (342)
T ss_pred             EEEEECChHHHHHHHhhchhheeeeeccCCCceEEEEeeccC-CHHHHHHHHHHHHHhh
Confidence            666666543332     33334577777765   764  444 7899999999988764

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.71  E-value=1.8e-14  Score=146.91  Aligned_cols=341  Identities=11%  Similarity=0.028  Sum_probs=193.0

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +...||+..|.--..-|.  -.|.|.+++.+.++...  .+....+..+.+..+++.+....... ..+++++  +++|+
T Consensus        55 G~~ylD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~~--~~~~~~~~~~~~~~la~~l~~~~p~~-~~~~v~f--~~sGs  127 (443)
T PRK06058         55 GNRLIDLGSGIAVTSVGN--SAPRVVEAVREQVARFT--HTCFMVTPYEGYVAVAEQLNRLTPGD-HEKRSAL--FNSGA  127 (443)
T ss_pred             CCEEEEcCcchhhhccCC--CCHHHHHHHHHHHHhcc--CccccccCCHHHHHHHHHHHHhCCCC-CCCEEEE--eCCcH
Confidence            457899988753122232  36788888888775421  11111122344445555554332100 0247777  89999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CC--------C-----CeEEeeeecCCC----CCCC--------
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-AR--------V-----PWSEYRYYDPKT----VGLD--------  215 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~-~G--------~-----~~~~v~~~~~~~----~~~d--------  215 (467)
                      +|.+.+.++...+...++|+...++|.++...... .+        .     .+..+|.....+    ...+        
T Consensus       128 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (443)
T PRK06058        128 EAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARA  207 (443)
T ss_pred             HHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHH
Confidence            99999866544444457899999999877543221 11        0     112222110100    0011        


Q ss_pred             hhhHHHHHHcCCCCcEEEEeCCCCCCCC-CC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012238          216 FEGMIADIKAAPGGSFILLHGCAHNPTG-ID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (467)
Q Consensus       216 ~~~l~~~l~~~~~~~~~i~i~~p~NPTG-~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (467)
                      ++.+++.+.  +++..+++ .-|-+..| .. .+.+.+++|.++|++||+++|.||++.+|...+   ..+.. ....-.
T Consensus       208 ~~~l~~~~~--~~~iAavi-~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG---~~fa~-~~~gv~  280 (443)
T PRK06058        208 ITVIEKQVG--ADNLAAVI-IEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTG---AWFAC-EHEGIV  280 (443)
T ss_pred             HHHHHHhhC--CCceEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCh---hhhHH-HhcCCC
Confidence            112222221  23444444 55666665 33 458889999999999999999999999885321   11211 111222


Q ss_pred             CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHH
Q 012238          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEW  373 (467)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~  373 (467)
                      +++++   ++|.++ .|+++|+++   .++++.+.            +.......+.+.+.+++.++.+.|+.  +.   
T Consensus       281 PDiv~---~gK~l~-~G~Pi~av~---~~~~i~~~------------~~~~~~~~T~~gnpl~~aaa~a~L~~--~~---  336 (443)
T PRK06058        281 PDLIT---TAKGIA-GGLPLSAVT---GRAEIMDA------------PHPGGLGGTYGGNPVACAAALAAIET--IE---  336 (443)
T ss_pred             CCEEE---Eccccc-CCCccEEEE---EcHHHHhh------------ccCCCCCCCCCCCHHHHHHHHHHHHH--HH---
Confidence            34443   379999 899999995   67777766            43332233446677777777776642  11   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccC--CCCCcccccCCcceEEec--CC-----CHH----HHHHHHHcccEEEeCCC
Q 012238          374 KAEMEMMAGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFSFT--GL-----NKA----QSDNMTNKWHVYMTKDG  440 (467)
Q Consensus       374 ~~~l~~~~~~~~~~r~~l~~~l~~~~g--~~~~~~~~~~~~g~f~~~--~l-----~~~----~~~~ll~~~gI~v~~gg  440 (467)
                       +  +...++.+++.+++.+.|+ ++.  .+. ...+...|.++.+.  +-     +.+    +.+.+++ +||++.+++
T Consensus       337 -~--~~l~~~~~~~g~~l~~~L~-~l~~~~~~-i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~-~Gv~~~~~~  410 (443)
T PRK06058        337 -E--DDLVARARQIEALMTDRLR-ALAAEDDR-IGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHA-AGVIVLTCG  410 (443)
T ss_pred             -H--cCHHHHHHHHHHHHHHHHH-HHHhhCCc-EEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHH-CCeEEeccC
Confidence             1  1344555566666666666 431  110 12245566655331  11     122    2344444 699998753


Q ss_pred             ------eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          441 ------RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 ------Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                            ||... .++++++++++++|.++++++
T Consensus       411 ~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~~  443 (443)
T PRK06058        411 TYGNVIRLLPPLVIGDELLREGLDVLEAALADL  443 (443)
T ss_pred             CCCCEEEEECCCccCHHHHHHHHHHHHHHHHhC
Confidence                  66422 248899999999999998764

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.71  E-value=1.2e-14  Score=146.76  Aligned_cols=341  Identities=10%  Similarity=-0.018  Sum_probs=189.5

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-CCCCcCCCCcchHHHHHHHHHHHhCCC--CcccccCceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GENKEYLPIEGLAAFNKVTAELLFGAD--NSVLKEQRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~l~~~~--~~~~~~~~i~~~~t~  158 (467)
                      +.+.||+..|.--..-|  +-.|.|.+++.+.+.. ......   ....+.+..+++.|....  .... .+++.+ .++
T Consensus        34 G~~ylD~~~g~~~~~lG--h~~p~v~~ai~~ql~~~~~~~~~---~~~~~~~~~lae~l~~~~~~~~~~-~~~~~f-~~~  106 (412)
T TIGR02407        34 GKEYIDFFAGAGALNYG--HNNPKLKQALIDYLADDGIIHSL---DMATEAKREFLETFNEIILKPRGL-DYKVQF-PGP  106 (412)
T ss_pred             CCEEEEcccchhhccCC--CCCHHHHHHHHHHHhhccceecc---ccCcHHHHHHHHHHHHhccCccCC-CceEEE-eCC
Confidence            45789998775411222  2368888888887753 111111   111233344444443321  0001 123444 148


Q ss_pred             CchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCC------------CeEEeeeecCCC-CCCChhhHHHHHH
Q 012238          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARV------------PWSEYRYYDPKT-VGLDFEGMIADIK  224 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~------------~~~~v~~~~~~~-~~~d~~~l~~~l~  224 (467)
                      +|++|.+.+.++........+|+....+|.+...... ..|.            .+..+|..+... ..-+++.+++.+.
T Consensus       107 sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~  186 (412)
T TIGR02407       107 TGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLE  186 (412)
T ss_pred             CchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHH
Confidence            9999999986654444344689998988876643222 1111            122333211000 0124667788776


Q ss_pred             cCC---CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEe
Q 012238          225 AAP---GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (467)
Q Consensus       225 ~~~---~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  300 (467)
                      +..   ++..++++...+++.|. .++.+.+++|.++|++||+++|+||++.+|.-.+   ..+.. ......++++   
T Consensus       187 ~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG---~~~a~-~~~~v~PDi~---  259 (412)
T TIGR02407       187 DSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTG---TFFSF-EPAGIEPDIV---  259 (412)
T ss_pred             hccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hhHHh-cccCCCCCEE---
Confidence            432   34567777778888998 6789999999999999999999999988774221   11111 1111223433   


Q ss_pred             cCccCcccC-CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHH----hCChhhHHHHHH
Q 012238          301 SYSKNLGLY-AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANV----VGNPALFDEWKA  375 (467)
Q Consensus       301 S~SK~~~~~-G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----L~~~~~~~~~~~  375 (467)
                      +++|.++ + |+|+|+++   .++++ +.            +.......+.+.+.++..++...    +.++.+    .+
T Consensus       260 ~~~K~lg-~~G~pigav~---~~~~~-~~------------~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l----~~  318 (412)
T TIGR02407       260 CLSKSIS-GYGLPLALTL---IKPEL-DV------------WKPGEHNGTFRGNNLAFVTATAALEYYWSDDAF----EK  318 (412)
T ss_pred             Eechhcc-CCccceeEEE---Echhh-hc------------cCCCccCCCCCccHHHHHHHHHHHHHHhcccHH----HH
Confidence            5789998 6 99999996   55554 43            22122222333444433333333    333322    23


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC-H----HHHHHHHHcccEEEeCCC------eEEe
Q 012238          376 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-K----AQSDNMTNKWHVYMTKDG------RISL  444 (467)
Q Consensus       376 ~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~-~----~~~~~ll~~~gI~v~~gg------Ris~  444 (467)
                      .++++.+++++..+.+.+.+. ..      ....+..|+++|+.+. .    ++...++ ++||++.+.|      ||+.
T Consensus       319 ~~~~~g~~l~~~l~~l~~~~~-~~------~~~vrg~Gl~~~l~l~~~~~~~~~~~~~~-~~Gv~v~~~~~~~~~lr~~p  390 (412)
T TIGR02407       319 AVQRKSEIIQERLDRIVAEYP-EL------IKQVRGRGLMQGIECGDGDLAGKIAKAAF-ENGLIIETSGPNDEVIKLLP  390 (412)
T ss_pred             HHHHHHHHHHHHHHHHHhhCC-Cc------eEeeecceeEEEEEecChHHHHHHHHHHH-HCCCEEeccCCCCCEEEEEC
Confidence            344444444443333332221 11      1223456788888662 1    2344555 4699997643      7765


Q ss_pred             cc-CChhhHHHHHHHHHHHHHh
Q 012238          445 AG-LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       445 ~~-~~~~~i~~~~~~l~~~l~~  465 (467)
                      .. ++++++++++++|.+++++
T Consensus       391 ~l~~t~~~i~~~~~~l~~~l~~  412 (412)
T TIGR02407       391 PLTIDEETLQQGLDILEQAVEE  412 (412)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhC
Confidence            43 4889999999999999864

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.70  E-value=3.4e-14  Score=144.41  Aligned_cols=341  Identities=11%  Similarity=0.033  Sum_probs=190.9

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCC---cCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK---EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~---~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      +.+.+||..|..-..-|.  -.|.|.+++.+.++.....   .| +.    +.+..+|+.+......  .-+++.+  ++
T Consensus        41 G~~ylD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~~~~~~~~~-~~----~~~~~la~~l~~~~p~--~~~~v~f--~~  109 (423)
T PRK05964         41 GRELIDAISSWWVATHGH--NHPYIDQAIREQLDRLDHVIFAGF-TH----EPAERLAQRLVALTPG--GLDHVFF--SD  109 (423)
T ss_pred             CCEEEEcchhHHhccCCC--CCHHHHHHHHHHHhhCCCcccccc-CC----HHHHHHHHHHHHhCCC--CCCEEEE--eC
Confidence            457899988754222233  3678888888877542211   12 22    2333444444332110  1257888  99


Q ss_pred             CchhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHHHHhh-CCC------------CeEEeeeecCCCCCCChhhH
Q 012238          159 SGTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKNIFND-ARV------------PWSEYRYYDPKTVGLDFEGM  219 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~-----~g-d~Vlv~~P~y~~~~~~~~~-~G~------------~~~~v~~~~~~~~~~d~~~l  219 (467)
                      +|++|.+.+.++...+.     +| .+|+...-+|.+....... .+-            .+..++....+....+++.+
T Consensus       110 sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l  189 (423)
T PRK05964        110 SGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDAL  189 (423)
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHH
Confidence            99999999866554431     23 5899999888764432221 111            12222221000001127788


Q ss_pred             HHHHHcCCCCcEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012238          220 IADIKAAPGGSFILLHGC-AHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (467)
Q Consensus       220 ~~~l~~~~~~~~~i~i~~-p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  297 (467)
                      ++.+.+.+++...+++.. .+...|... +.+.+++|.++|++||+++|+||++.++...+   ..+.. ......+++ 
T Consensus       190 ~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G---~~~a~-~~~~v~pDi-  264 (423)
T PRK05964        190 EALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTG---TLFAC-EQAGVSPDI-  264 (423)
T ss_pred             HHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---chhHH-HhcCCCCCe-
Confidence            888865444555555544 477778766 89999999999999999999999988775322   11111 111122233 


Q ss_pred             EEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh------ccCccCCCchHHHHHHHHHhCChhhHH
Q 012238          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL------ARPMYSNPPVHGARIVANVVGNPALFD  371 (467)
Q Consensus       298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~L~~~~~~~  371 (467)
                        -+++|.++..++++|+++   .++++.+.            +...      ....+.+.+.++..++...|+-  +  
T Consensus       265 --~~~~K~l~gG~~p~~av~---~~~~i~~~------------~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~--l--  323 (423)
T PRK05964        265 --MCLSKGLTGGYLPLAATL---CTAEIFEA------------FYSDDRAKAFMHSPSYTANPLACAAANASLDL--F--  323 (423)
T ss_pred             --eeeehhhhcCcccceEEE---EcHHHHHh------------hhcCCcccccccCCCCCcCHHHHHHHHHHHHH--H--
Confidence              367899984448999984   77887776            3211      1111223455555555544431  1  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCcccccCCcceE-EecC-CC----H-HHHHHHHHcccEEEeCCC---
Q 012238          372 EWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFILRQIGMF-SFTG-LN----K-AQSDNMTNKWHVYMTKDG---  440 (467)
Q Consensus       372 ~~~~~l~~~~~~~~~~r~~l~~~l~~~~-g~~~~~~~~~~~~g~f-~~~~-l~----~-~~~~~ll~~~gI~v~~gg---  440 (467)
                        ++  +...++..+.-+++.+.|+ ++ ..+. +......|.++ +.+. .+    . .+.+.++ ++||++.+.+   
T Consensus       324 --~~--~~~~~~~~~~g~~l~~~l~-~l~~~~~-i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~-~~Gv~v~~~~~~l  396 (423)
T PRK05964        324 --ED--EPVLERVAALSAGLAEGLE-PFRDLPG-VADVRVLGAIGAVELDRPVLERDGPALRAFAL-ERGVLLRPLGNTI  396 (423)
T ss_pred             --Hh--cCHHHHHHHHHHHHHHHHH-hhccCCC-eEEeecccEEEEEEeccCcchhHHHHHHHHHH-HCCeEEEecCCEE
Confidence              00  1233444444555555555 43 1211 11123334332 1122 11    2 2344554 4699998765   


Q ss_pred             eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          441 RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ||+.. ..+++++++++++++++++++
T Consensus       397 R~~p~l~~t~edId~~v~~l~~al~~~  423 (423)
T PRK05964        397 YLMPPYIITAEELDRITDAIVEVADEL  423 (423)
T ss_pred             EEeCCcccCHHHHHHHHHHHHHHHhhC
Confidence            78755 238899999999999999874

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.70  E-value=1.3e-14  Score=148.45  Aligned_cols=327  Identities=13%  Similarity=0.095  Sum_probs=189.8

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC---Ccc------hHH-HHHHHHHHHhCCCCcccccCce
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP---IEG------LAA-FNKVTAELLFGADNSVLKEQRV  152 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~---~~G------~~~-lr~aia~~l~~~~~~~~~~~~i  152 (467)
                      .+.|+|-.+++      . ++|.+++++...+...+..+++.   ..|      +++ .|+.++++++.+      ++++
T Consensus        34 ~~~l~l~~sen------~-~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~------~~~~  100 (452)
T PTZ00094         34 IEGLELIASEN------F-TSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLD------PEEW  100 (452)
T ss_pred             HcCeeEecccc------c-CCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCC------cccc
Confidence            36899998765      2 37889988888774432112211   112      332 566778886543      4555


Q ss_pred             ee-eecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh----------CCCCeEEeeeecCCCCCCChhhHHH
Q 012238          153 AT-VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND----------ARVPWSEYRYYDPKTVGLDFEGMIA  221 (467)
Q Consensus       153 ~~-~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~----------~G~~~~~v~~~~~~~~~~d~~~l~~  221 (467)
                      .+ +++.+|+++..++  +...+.+||+|++....+..+......          .+.++..++.  +.++.+|++.+++
T Consensus       101 ~~~~~~~sgt~an~~v--~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~--~~~g~id~~~L~~  176 (452)
T PTZ00094        101 GVNVQPYSGSPANFAV--YTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQV--NEKGLIDYDKLEE  176 (452)
T ss_pred             eeecCCCchHHHHHHH--HHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeeccc--CCCCCcCHHHHHH
Confidence            33 3347899999887  445577999999987666554332211          1123334444  2247799999999


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEec
Q 012238          222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (467)
Q Consensus       222 ~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  301 (467)
                      .+++.  +++++++.  ++.+|...+.+   +|.++|+++|+++++|++.. +..-..+....++      ..-.+++.|
T Consensus       177 ~l~~~--~~~lvi~~--~s~~g~~~di~---~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~~------~~~D~l~~S  242 (452)
T PTZ00094        177 LAKAF--RPKLIIAG--ASAYPRDIDYK---RFREICDSVGAYLMADIAHT-SGLVAAGVLPSPF------PYADVVTTT  242 (452)
T ss_pred             HHHHh--CCCEEEEe--CCCCCCccCHH---HHHHHHHHcCCEEEEeccch-hccccCCCCCCCC------CCCcEEEcC
Confidence            99742  34455543  34589888876   55566999999999999943 3321111101111      123588999


Q ss_pred             CccCc-ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCcc-CCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238          302 YSKNL-GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMY-SNPPVHGARIVANVVGNPALFDEWKAEMEM  379 (467)
Q Consensus       302 ~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~  379 (467)
                      .+|++ |+.   -|++.  + .++..+.        +...+.....+.+ ++++.....++..++..  +   .....++
T Consensus       243 ~hK~l~GP~---Gg~l~--~-~~~~~~~--------l~~~~~~~~~p~~~G~~~~~~iaal~~al~~--~---~~~~~~~  303 (452)
T PTZ00094        243 THKSLRGPR---SGLIF--Y-RKKVKPD--------IENKINEAVFPGLQGGPHNHQIAAIAVQLKE--V---QSPEWKE  303 (452)
T ss_pred             CccCCCCCC---ceEEE--E-ecccchH--------HHHhhccccCCCCCCCchHHHHHHHHHHHHH--H---hChhHHH
Confidence            99976 433   36664  2 3334333        2221221111211 12333332233333321  0   0123456


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCcccccCC--cceEE-ec---CCCHHHHHHHHHcccEEEeC------------CC-
Q 012238          380 MAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ--IGMFS-FT---GLNKAQSDNMTNKWHVYMTK------------DG-  440 (467)
Q Consensus       380 ~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~--~g~f~-~~---~l~~~~~~~ll~~~gI~v~~------------gg-  440 (467)
                      ..+++.++++++.+.|. +.|+    ++..+.  ....+ .+   +.+.+.+..+|+++||.+..            ++ 
T Consensus       304 ~~~~i~~l~~~l~~~L~-~~g~----~v~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~v  378 (452)
T PTZ00094        304 YAKQVLKNAKALAAALE-KRGY----DLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGV  378 (452)
T ss_pred             HHHHHHHHHHHHHHHHH-hCCc----EEecCCCCCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeE
Confidence            77888889999999998 6663    333211  11111 11   34667777788888999942            23 


Q ss_pred             eEEeccC-----ChhhHHHHHHHHHHHHH
Q 012238          441 RISLAGL-----SLAKCEYLADAIIDSYH  464 (467)
Q Consensus       441 Ris~~~~-----~~~~i~~~~~~l~~~l~  464 (467)
                      |+|+..+     ++++++++++.|.++++
T Consensus       379 Ris~~~~tt~g~~~~di~~l~~~l~~~~~  407 (452)
T PTZ00094        379 RLGTPALTTRGAKEKDFKFVADFLDRAVK  407 (452)
T ss_pred             EECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            8886543     37999999999999886

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.69  E-value=5.2e-14  Score=142.90  Aligned_cols=346  Identities=13%  Similarity=0.073  Sum_probs=187.6

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-CCCCc-CCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GENKE-YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~~~~~-Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.||+..|.--..-|.  -.|.|.+++.+.+.. ..... +.......+|-+.+++.+....+  . .+.+.+ .+++
T Consensus        38 G~~ylD~~~g~~~~~lGh--~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~--~-~~~~~f-~~~s  111 (425)
T PRK09264         38 GKEYIDFFAGAGALNYGH--NNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETILKPRG--L-DYKVQF-TGPT  111 (425)
T ss_pred             CCEeeecccchhhccCCC--CCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcCCcC--C-CceEEE-eCCC
Confidence            457899988754222232  367888888887753 11111 11122222344444443211100  1 124544 1479


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-hhC---------CC---CeEEeeeecCCCC-CCChhhHHHHHHc
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDA---------RV---PWSEYRYYDPKTV-GLDFEGMIADIKA  225 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~-~~~---------G~---~~~~v~~~~~~~~-~~d~~~l~~~l~~  225 (467)
                      |++|.+.+.++........+|+....+|.+..... ...         |.   .+..+|..+.... .-|++.+++.+++
T Consensus       112 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~  191 (425)
T PRK09264        112 GTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLED  191 (425)
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHh
Confidence            99999998666544444468888888887654321 111         11   2333333110000 1367788888864


Q ss_pred             CC---CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEec
Q 012238          226 AP---GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (467)
Q Consensus       226 ~~---~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  301 (467)
                      ..   +...++++-..+.-.|. .++.+.+++|.++|++||+++|+||++.++...+   ..+.... ....+++   .+
T Consensus       192 ~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG---~~~~~~~-~~v~PDi---~t  264 (425)
T PRK09264        192 SSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTG---TFFSFER-AGITPDI---VT  264 (425)
T ss_pred             ccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCcccc---HHHHHhh-cCCCCCE---EE
Confidence            31   23456666655655676 5688999999999999999999999998764321   1111111 1222343   36


Q ss_pred             CccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 012238          302 YSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMA  381 (467)
Q Consensus       302 ~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~  381 (467)
                      ++|.++..|+++|+++   .++++ ..            +.......+.+.+.++..++...|.+  +   |++  ....
T Consensus       265 ~~K~l~~~G~pigav~---~~~~i-~~------------~~~~~~~~T~~gnp~~~aaa~a~l~~--~---~~~--~~l~  321 (425)
T PRK09264        265 LSKSISGYGLPMALVL---IKPEL-DV------------WKPGEHNGTFRGNNLAFVTATAALEE--Y---WSD--DAFE  321 (425)
T ss_pred             eccccCCCccceEEEE---Echhh-hc------------cCCCccCCCCCCCHHHHHHHHHHHHH--H---Hhh--hHHH
Confidence            6899995599999996   55554 33            22211111223334444444344421  1   111  1234


Q ss_pred             HHHHHHHHHHHHHhhhcc--CCCCCcccccCCcceEEecCCC-H----HHHHHHHHcccEEEeCCC----eEEec-c--C
Q 012238          382 GRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGLN-K----AQSDNMTNKWHVYMTKDG----RISLA-G--L  447 (467)
Q Consensus       382 ~~~~~~r~~l~~~l~~~~--g~~~~~~~~~~~~g~f~~~~l~-~----~~~~~ll~~~gI~v~~gg----Ris~~-~--~  447 (467)
                      ++++++.+++.+.|+ ++  ..|. +.......|+++++.+. .    .+...+++ .||.+.+.|    ||.+. .  .
T Consensus       322 ~~~~~~g~~l~~~l~-~l~~~~~~-~~~~vrg~Gl~~~i~l~~~~~~~~l~~~~~~-~Gv~~~~~~~~~~~lr~~p~l~~  398 (425)
T PRK09264        322 KEVKAKGELVRERLE-EIAAKYPG-LGAEVRGRGMMQGIDFGDGELAGKIAAEAFE-NGLIIETSGPEDEVVKLLPPLTI  398 (425)
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCC-ceecceecccEEEEEecChHHHHHHHHHHHH-CCCEEeccCCCCCEEEEeCCCCC
Confidence            444444555555444 32  1111 11112334666676552 1    33445554 699998754    66555 2  3


Q ss_pred             ChhhHHHHHHHHHHHHHhc
Q 012238          448 SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       448 ~~~~i~~~~~~l~~~l~~~  466 (467)
                      +++++++++++|.++++++
T Consensus       399 t~~ei~~~~~~l~~~l~~~  417 (425)
T PRK09264        399 DEEELEEGLDILEEAVAEV  417 (425)
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            7899999999999998753

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.69  E-value=2.8e-14  Score=141.35  Aligned_cols=318  Identities=13%  Similarity=0.095  Sum_probs=193.9

Q ss_pred             HHHHHH-HHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEE
Q 012238          104 DVVKKA-ENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI  182 (467)
Q Consensus       104 ~~v~~a-~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv  182 (467)
                      ..+.++ +..+.. +. ..|.......+|.+++++++..        ++++.  +++|+.|++++  +...+.|||.|  
T Consensus        50 ~aMs~~q~a~~~~-GD-e~yag~~s~~~lE~~va~~~G~--------~~av~--v~sGT~Al~ll--~~l~l~pGDeV--  113 (450)
T TIGR02618        50 NAMSDKQWAGLMM-GD-EAYAGSRNFYHLERTVRELYGF--------KYVVP--THQGRGAENLL--SQIAIKPGDYV--  113 (450)
T ss_pred             HHHHHHHHHHhhh-cc-hhhcCCCcHHHHHHHHHHHHCC--------CeEEE--cCCHHHHHHHH--HHhCCCCcCEE--
Confidence            445554 333332 32 4588888899999999999653        36777  99999999986  33346799977  


Q ss_pred             cCCCCcch-HHHHhhCCCCeEEeeee--------cCCCCCCChhhHHHHHHcCC-CCcEEEEeCCCCC-CCCCCCCHHHH
Q 012238          183 SSPTWGNH-KNIFNDARVPWSEYRYY--------DPKTVGLDFEGMIADIKAAP-GGSFILLHGCAHN-PTGIDPTPEQW  251 (467)
Q Consensus       183 ~~P~y~~~-~~~~~~~G~~~~~v~~~--------~~~~~~~d~~~l~~~l~~~~-~~~~~i~i~~p~N-PTG~~~~~~~l  251 (467)
                      ++++|... ...++..|+.++.++.+        ++.++.+|++.+++.+++.. .++.++.+.+++| ..|..++.+++
T Consensus       114 psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l  193 (450)
T TIGR02618       114 PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANM  193 (450)
T ss_pred             CCceeHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHH
Confidence            77777444 44478889866666443        24567899999999998532 2344556666677 55899999999


Q ss_pred             HHHHHHHHhcCCeeEEeccCCC-CCCC----CCCCChhHH----HHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238          252 EKIADVIQEKNHIPFFDVAYQG-FASG----SLDNDASSV----RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (467)
Q Consensus       252 ~~l~~~~~~~~~~li~Deay~~-~~~~----~~~~~~~~~----~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (467)
                      +++.++|++||+.||.|.+... -.+-    .......++    +.+....  ..+..|..|..+.+   +|.++ ++.+
T Consensus       194 ~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~a--D~~~~S~~Kd~~~~---~GG~l-~~~d  267 (450)
T TIGR02618       194 REVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYA--DGCTMSGKKDCLVN---IGGFL-CMND  267 (450)
T ss_pred             HHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccC--cEEEEeeccCCCCC---CceEE-EeCC
Confidence            9999999999999999998432 1110    000111123    2333322  23788999998766   35443 2588


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhccCc--cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          323 SDLAARCCEVAVIQVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      ++++++        .+...... ..+  +.....-...+++..|.+. ..+       ....+-....++|.+.|. +.|
T Consensus       268 ~~l~~k--------~r~~~~~~-eG~~tyGgla~r~~~ala~gL~e~-~~~-------~y~~~r~~~a~~La~~L~-~~G  329 (450)
T TIGR02618       268 DEMFQS--------AKELVVVF-EGMPSYGGLAGRDMEAMAIGIREA-VDY-------EYIEHRVKQVRYLGDKLK-AAG  329 (450)
T ss_pred             HHHHHH--------HHHHhhhc-CCccccCchhhhhHHHHHHHHHHh-hhH-------HHHHHHHHHHHHHHHHHH-HCC
Confidence            988887        33321111 111  1111221222222223211 111       111112224567888888 777


Q ss_pred             CCCCcccccCCcceEEecCC-------C------HHHHHHHHHcccEEEeCC-----------C----------eEEecc
Q 012238          401 SGKDWSFILRQIGMFSFTGL-------N------KAQSDNMTNKWHVYMTKD-----------G----------RISLAG  446 (467)
Q Consensus       401 ~~~~~~~~~~~~g~f~~~~l-------~------~~~~~~ll~~~gI~v~~g-----------g----------Ris~~~  446 (467)
                      +    .+..|.+|--+|++.       .      ..++.+|-.+.||-...-           |          |+.+..
T Consensus       330 v----pv~~p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaipr  405 (450)
T TIGR02618       330 V----PIVEPVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPR  405 (450)
T ss_pred             C----cccCCCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeecccc
Confidence            5    455666665566532       1      234455556667743321           1          887753


Q ss_pred             --CChhhHHHHHHHHHHHHHh
Q 012238          447 --LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       447 --~~~~~i~~~~~~l~~~l~~  465 (467)
                        .+.+++++++++|..+.++
T Consensus       406 r~yt~~h~~~v~~~~~~~~~~  426 (450)
T TIGR02618       406 RVYTYAHMDVVADGIIKLYKH  426 (450)
T ss_pred             ccccHhHHHHHHHHHHHHHhh
Confidence              4778999999999988764

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.69  E-value=3e-14  Score=144.11  Aligned_cols=156  Identities=21%  Similarity=0.174  Sum_probs=121.5

Q ss_pred             cchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCCe
Q 012238          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPW  201 (467)
Q Consensus       126 ~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~  201 (467)
                      +-..+|++.+|++....        ..++  +++|++|++++  +...+.+||+|+++...|......+    +..|+++
T Consensus        64 p~~~~le~~lA~l~g~~--------~av~--~sSGt~Al~~a--l~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v  131 (433)
T PRK08134         64 PTVAVLEERVAALEGGV--------GAIA--TASGQAALHLA--IATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIET  131 (433)
T ss_pred             hHHHHHHHHHHHHhCCC--------cEEE--eCCHHHHHHHH--HHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEE
Confidence            44788999999996543        3456  89999999998  4555779999999999997654443    4589988


Q ss_pred             EEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012238          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (467)
Q Consensus       202 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~  281 (467)
                      +.++..       |++.+++.++   +++++|++.+++||||.+.+.+   +|+++|+++|+++|+|.++..-...    
T Consensus       132 ~~vd~~-------d~~~l~~~i~---~~TklV~~e~~~np~g~v~Di~---~I~~la~~~gi~livD~t~a~~~~~----  194 (433)
T PRK08134        132 TFVKPG-------DIDGWRAAIR---PNTRLLFGETLGNPGLEVLDIP---TVAAIAHEAGVPLLVDSTFTTPYLL----  194 (433)
T ss_pred             EEECCC-------CHHHHHHhcC---CCCeEEEEECCCcccCcccCHH---HHHHHHHHcCCEEEEECCCcccccC----
Confidence            888751       7899999987   6788999999999999998865   6777799999999999996432211    


Q ss_pred             ChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                      .  ++    +. .-.+++.|.+|.++.+|..+|.++
T Consensus       195 ~--pl----~~-GaD~vv~S~tK~l~g~g~~~gG~v  223 (433)
T PRK08134        195 R--PF----EH-GADLVYHSATKFLGGHGTAIGGVL  223 (433)
T ss_pred             C--ch----hc-CCCEEEeccccccCCCCCceEEEE
Confidence            1  11    11 235889999999998998888876

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.68  E-value=1.2e-15  Score=134.65  Aligned_cols=166  Identities=22%  Similarity=0.159  Sum_probs=123.7

Q ss_pred             hHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH-HHHhhCCCCeEEeee
Q 012238          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK-NIFNDARVPWSEYRY  206 (467)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~-~~~~~~G~~~~~v~~  206 (467)
                      ..++++.++++++.      +.+++++  +.|+++++.++  +.....+|++|+++.|+|..+. ..++..|++++.++.
T Consensus         2 ~~~~~~~l~~~~~~------~~~~~~~--~~~~t~a~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~   71 (170)
T cd01494           2 LEELEEKLARLLQP------GNDKAVF--VPSGTGANEAA--LLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPV   71 (170)
T ss_pred             HHHHHHHHHHHcCC------CCCcEEE--eCCcHHHHHHH--HHHhCCCCCEEEEeecccceehhhHHHhcCCEEEEecc
Confidence            35789999999741      2567888  88999999998  3333557999999999998888 888999999999987


Q ss_pred             ecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012238          207 YDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (467)
Q Consensus       207 ~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~  286 (467)
                      ++......+.+.+++...  ..++.++++++++||+|...+.   ++|+++|+++|+++|+|++|..+......   .  
T Consensus        72 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~g~~~~~---~~l~~~~~~~~~~li~D~a~~~~~~~~~~---~--  141 (170)
T cd01494          72 DDAGYGGLDVAILEELKA--KPNVALIVITPNTTSGGVLVPL---KEIRKIAKEYGILLLVDAASAGGASPAPG---V--  141 (170)
T ss_pred             CCCCccchhhhhhhhccc--cCceEEEEEecCcCCCCeEcCH---HHHHHHHHHcCCEEEEecccccccccccc---c--
Confidence            533322233334544333  2677899999999999999887   56777799999999999999887754211   0  


Q ss_pred             HHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          287 RLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                       . .......+++.|++|.++.  .++|+++
T Consensus       142 -~-~~~~~~d~~~~s~~K~~~~--~~~G~l~  168 (170)
T cd01494         142 -L-IPEGGADVVTFSLHKNLGG--EGGGVVI  168 (170)
T ss_pred             -c-cccccCCEEEEEcccccCC--CceEEEE
Confidence             0 1122356888999999985  6789985

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.68  E-value=3.4e-14  Score=129.38  Aligned_cols=309  Identities=14%  Similarity=0.115  Sum_probs=195.1

Q ss_pred             chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhC-CCCEE
Q 012238          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF-PGAKV  180 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~-~gd~V  180 (467)
                      +...+++++.++....  .-|+......+|.+..|+....       +.-+++   .+||.+..++  ++..+. +|..|
T Consensus        34 PTdeMr~am~eA~vgD--dVyGeD~tt~rLE~~vA~l~GK-------EAgLFv---~SGTmgNlla--Im~Hc~~rg~ei   99 (384)
T KOG1368|consen   34 PTDEMRRAMAEASVGD--DVYGEDPTTNRLEQRVAELFGK-------EAGLFV---PSGTMGNLLA--IMVHCHQRGSEI   99 (384)
T ss_pred             ChHHHHHHHhhcccCc--ccccCCccHHHHHHHHHHHhCc-------cceeee---cccccccHHH--HHHHhcCCCceE
Confidence            3688888888876443  4465556677999999999543       344555   5555556565  565666 89999


Q ss_pred             EEcCCCCc-chHH--HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC-----CCCcEEEEeCCCCCCCC-CCCCHHHH
Q 012238          181 LISSPTWG-NHKN--IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-----PGGSFILLHGCAHNPTG-IDPTPEQW  251 (467)
Q Consensus       181 lv~~P~y~-~~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~-----~~~~~~i~i~~p~NPTG-~~~~~~~l  251 (467)
                      ++-+-++- .|..  +....|+.+.++..  ++++.+|+++++..+...     .+.+++|++-|-||-+| .++|.|++
T Consensus       100 i~gd~~HI~~~E~gg~s~l~gv~~~tv~~--e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~  177 (384)
T KOG1368|consen  100 IVGDRAHIHRYEQGGISQLAGVHVRTVKN--ENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEEL  177 (384)
T ss_pred             EeccchheeehhccChhhhccceeEeeee--CCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHH
Confidence            99886653 3332  34456666666654  667789999999999842     35788898888777776 99999999


Q ss_pred             HHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhh
Q 012238          252 EKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCE  331 (467)
Q Consensus       252 ~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~  331 (467)
                      .++.++|+++|+.+..|.+-.+-+.-.   ...++..+....+.+=+  =|||.+|.|   +|-++  .++++++++   
T Consensus       178 ~~v~~lak~~glkLH~DGARi~NAava---sgV~vk~i~~~fDSVsi--CLSKglgAP---VGSVi--VG~k~FI~k---  244 (384)
T KOG1368|consen  178 DRVKALAKRHGLKLHMDGARIFNAAVA---SGVPVKKICSAFDSVSI--CLSKGLGAP---VGSVI--VGSKDFIDK---  244 (384)
T ss_pred             HHHHHHHhccCCeeecchhhhhhHHHH---cCCCHHHHHHhhhhhhh--hhhccCCCC---cccEE--EccHHHHHH---
Confidence            999999999999999999843222110   11133344333333222  278999877   89986  699999987   


Q ss_pred             hhHHHHHHHHHhhccCccCCCc--hHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccc
Q 012238          332 VAVIQVKSQLKRLARPMYSNPP--VHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  409 (467)
Q Consensus       332 ~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~  409 (467)
                               .+........+.-  .+..+++..+|++.     |. .+..-.    ++...+.+.+. ..+   .+++..
T Consensus       245 ---------A~~~RKalGGGmRQsGvLaaaaLval~~~-----~~-~L~~dH----k~A~~lAe~~~-~~~---~i~v~v  301 (384)
T KOG1368|consen  245 ---------ARHFRKALGGGMRQSGVLAAAALVALDEN-----VP-LLRADH----KRAKELAEYIN-TPE---EIRVEV  301 (384)
T ss_pred             ---------HHHHHHHhcCchhHHHHHHHHHHHHhhcc-----hH-HHHHHH----HHHHHHHHHhc-ccc---ceeeec
Confidence                     3222222222222  22223333333321     11 122222    23344555555 443   133333


Q ss_pred             C--CcceEEe-----cCCCHHHHHHHHHcccEEEeCCC----eEEecc-CChhhHHHHHHHHHHHH
Q 012238          410 R--QIGMFSF-----TGLNKAQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEYLADAIIDSY  463 (467)
Q Consensus       410 ~--~~g~f~~-----~~l~~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~~~i~~~~~~l~~~l  463 (467)
                      +  +.+ ++.     .+++.+.+.+.++++||.+..+.    ||.|.. +++++++++...+.+.+
T Consensus       302 ~a~etN-iv~~~l~q~~~~~~~l~~~~~k~gi~lm~~~s~r~Rivlh~Qvt~~~ve~~~~~~~k~~  366 (384)
T KOG1368|consen  302 PAVETN-IVNMVLCQARLTAEELCKFLEKNGILLMGGASRRIRIVLHHQVTDEDVEYVKSVLSKKF  366 (384)
T ss_pred             chhhcc-eeeeecccccCCHHHHHHHHHHCCeEEeeccccceEEEEEEecCHHHHHHHHHHHHHHH
Confidence            3  444 433     35677776666677899998874    777653 58899999999995443

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.67  E-value=4.6e-14  Score=139.95  Aligned_cols=215  Identities=19%  Similarity=0.221  Sum_probs=144.6

Q ss_pred             CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCCC
Q 012238          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVP  200 (467)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~  200 (467)
                      .+....+.+.++++..+        +.+++  +++|+.|+..+  +++.+.+||+|+++...|......++    ..|++
T Consensus        54 nPt~~~le~~la~Le~g--------~~a~~--~~SGmaAi~~~--l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~  121 (386)
T PF01053_consen   54 NPTVRALEQRLAALEGG--------EDALL--FSSGMAAISAA--LLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVE  121 (386)
T ss_dssp             -HHHHHHHHHHHHHHT---------SEEEE--ESSHHHHHHHH--HHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSE
T ss_pred             cccHHHHHHHHHHhhcc--------cceee--ccchHHHHHHH--HHhhcccCCceEecCCccCcchhhhhhhhcccCcE
Confidence            34467788888888543        35666  79999999887  67778899999999999987766554    46888


Q ss_pred             eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC-CeeEEeccCCCCCCCCC
Q 012238          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN-HIPFFDVAYQGFASGSL  279 (467)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~-~~li~Deay~~~~~~~~  279 (467)
                      +..++.       -|++.++++++   +++++|++-+|.||+..+.+   +++|+++|+++| +++|+|..+.....-  
T Consensus       122 v~~~d~-------~d~~~l~~~l~---~~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp~~~--  186 (386)
T PF01053_consen  122 VTFVDP-------TDLEALEAALR---PNTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATPYNQ--  186 (386)
T ss_dssp             EEEEST-------TSHHHHHHHHC---TTEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTTC--
T ss_pred             EEEeCc-------hhHHHHHhhcc---ccceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeeccccceeee--
Confidence            777643       58899999998   68999999999999977655   557888899998 999999997654321  


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC-HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS-SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                        ++  +    +.+ -.|++.|.+|.++-.|--+|.+++ +.+ +++.+.            ++..........++....
T Consensus       187 --~p--L----~~G-aDivv~S~TKyl~Ghsdv~~G~vv-~~~~~~~~~~------------l~~~~~~~G~~~~p~da~  244 (386)
T PF01053_consen  187 --NP--L----ELG-ADIVVHSATKYLSGHSDVMGGAVV-VNGSSELYDR------------LREFRRLLGATLSPFDAW  244 (386)
T ss_dssp             ---G--G----GGT--SEEEEETTTTTTTSSSE-EEEEE-ESSHHHHHHH------------HHHHHHHHT-B--HHHHH
T ss_pred             --cc--C----cCC-ceEEEeeccccccCCcceeeEEEE-ECchhhhhhh------------hcchhhhcCccchHHHHH
Confidence              11  1    122 358899999999766655666553 344 566666            443333333345555544


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                      .+..-|..          +..+.++..++...+.+.|+ ..
T Consensus       245 ll~rgl~T----------l~~R~~~~~~nA~~lA~~L~-~h  274 (386)
T PF01053_consen  245 LLLRGLRT----------LPLRMERQNENAEALAEFLE-EH  274 (386)
T ss_dssp             HHHHHHTT----------HHHHHHHHHHHHHHHHHHHH-TS
T ss_pred             HHhcCCCc----------HHHHHHHHHHHHHHHHHHHH-hC
Confidence            44444433          34455666667777888887 54

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.67  E-value=3e-14  Score=143.16  Aligned_cols=327  Identities=15%  Similarity=0.103  Sum_probs=191.8

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcC------CCCcchHHHHHHHHHHHhCCCCcccccCceeeeec
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY------LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y------~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (467)
                      +.|+|-..++       ++++.+++++...+...+..+|      .....+.++.....+.....++.    + .+-||.
T Consensus        50 ~~l~LiasEN-------~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a----~-~anvqp  117 (493)
T PRK13580         50 SSLKLIASEN-------YSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGA----E-HAYVQP  117 (493)
T ss_pred             cCceEecccc-------cCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCC----C-cccccC
Confidence            6788887665       2378899998887754433333      23344445544433333322221    1 133456


Q ss_pred             CCchhHHHHHHHHHHHhCC-------------------------------CCEEEEcCCCCcchHHH---HhhCC--CCe
Q 012238          158 LSGTGSLRLAAALIERYFP-------------------------------GAKVLISSPTWGNHKNI---FNDAR--VPW  201 (467)
Q Consensus       158 ~ggt~al~l~~~~l~~~~~-------------------------------gd~Vlv~~P~y~~~~~~---~~~~G--~~~  201 (467)
                      .+|+.|...+  +.+.+.|                               ||+|+..++..+.+...   ....|  .+.
T Consensus       118 ~Sg~~An~~v--~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~  195 (493)
T PRK13580        118 HSGADANLVA--FWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQ  195 (493)
T ss_pred             CCcHHHHHHH--HHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeee
Confidence            8888888887  5556655                               89999998766544221   11122  456


Q ss_pred             EEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012238          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (467)
Q Consensus       202 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~  281 (467)
                      +.++++ ++++.+|++.+++.+++   .+..++++...|=++ ..+   +++|.++|+++|.++++|+++.--..+.   
T Consensus       196 ~~y~vd-~~~g~iD~d~l~~~~~~---~~plvii~g~S~~~~-~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg---  264 (493)
T PRK13580        196 RSYGVD-PDTGLLDYDEIAALARE---FKPLILVAGYSAYPR-RVN---FAKLREIADEVGAVLMVDMAHFAGLVAG---  264 (493)
T ss_pred             EecccC-cccCccCHHHHHHHHhh---cCCEEEEeCccccCC-CcC---HHHHHHHHHHcCCEEEEECchhhceecc---
Confidence            666664 44677999999999984   333444455555544 555   5567777999999999999954322221   


Q ss_pred             ChhHHHHHHhcCCeEEEEecCccCc-ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHH
Q 012238          282 DASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV  360 (467)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  360 (467)
                      +...- .+.....-.++++|++|++ |..   .|++.   .++++++.            +.......++++......++
T Consensus       265 ~~~~~-~~~~~~~~D~vtgT~hKaL~GP~---GG~I~---~~~~l~~~------------L~~a~P~i~gg~l~p~iAA~  325 (493)
T PRK13580        265 KVFTG-DEDPVPHADIVTTTTHKTLRGPR---GGLVL---AKKEYADA------------VDKGCPLVLGGPLPHVMAAK  325 (493)
T ss_pred             ccchh-hcCCCCCCcEEEeCChhhccCCC---eEEEE---ecHHHHHH------------HhhCCCcccCCCccHHHHHH
Confidence            11000 0000112358899999988 433   37774   66777776            54333333444333322222


Q ss_pred             HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccc--CCcceEEecCC-----CHHHHHHHHHccc
Q 012238          361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL--RQIGMFSFTGL-----NKAQSDNMTNKWH  433 (467)
Q Consensus       361 ~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~--~~~g~f~~~~l-----~~~~~~~ll~~~g  433 (467)
                      +..+.  .+.   ..+..+.++++.++.+.|.+.|. +.|+    ++..  .+.. .+++.+     +...+.+.|++.|
T Consensus       326 avAl~--e~~---~~ef~~y~~~l~~Na~~La~~L~-~~G~----~vv~ggTdsh-IV~V~lg~~~~~g~~a~~~L~e~G  394 (493)
T PRK13580        326 AVALA--EAR---TPEFQKYAQQVVDNARALAEGFL-KRGA----RLVTGGTDNH-LVLIDVTSFGLTGRQAESALLDAG  394 (493)
T ss_pred             HHHHH--HHh---CccHHHHHHHHHHHHHHHHHHHH-hcCC----CccCCCCCCC-EEEEEeCCHHHHHHHHHHHHHHCC
Confidence            22221  110   11124577888899999999999 8884    4432  2222 233333     2335666777789


Q ss_pred             EEEeCC-------------C-eEEec-----cCChhhHHHHHHHHHHHHHh
Q 012238          434 VYMTKD-------------G-RISLA-----GLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       434 I~v~~g-------------g-Ris~~-----~~~~~~i~~~~~~l~~~l~~  465 (467)
                      |.+.+.             | ||+..     ++++++++++++.|.++++.
T Consensus       395 I~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~  445 (493)
T PRK13580        395 IVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSN  445 (493)
T ss_pred             eEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHh
Confidence            998631             2 77654     33579999999999988764

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.67  E-value=6e-14  Score=141.76  Aligned_cols=157  Identities=17%  Similarity=0.113  Sum_probs=116.3

Q ss_pred             cchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCCCe
Q 012238          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPW  201 (467)
Q Consensus       126 ~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~~  201 (467)
                      .....|++.+|++....        ..++  +++|+.|+.++  +...+.+||+|+++...|......    +...|+++
T Consensus        69 p~~~~Le~~lA~l~g~~--------~av~--~sSG~aAi~~a--l~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v  136 (436)
T PRK07812         69 PTQDVVEQRIAALEGGV--------AALL--LASGQAAETFA--ILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEV  136 (436)
T ss_pred             chHHHHHHHHHHHhCCC--------eEEE--EccHHHHHHHH--HHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEE
Confidence            34678999999986442        3455  68999999887  566678999999999888765433    34577777


Q ss_pred             EEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012238          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (467)
Q Consensus       202 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~  281 (467)
                      +.++.  .    .|++.+++.++   +++++|++.+|+||+|.+.+.+   +|+++|+++|+++|+|+++......    
T Consensus       137 ~~vdd--~----~d~e~l~~ai~---~~tklV~ie~~sNp~G~v~Dl~---~I~~la~~~gi~liVD~t~a~~~~~----  200 (436)
T PRK07812        137 SFVED--P----DDLDAWRAAVR---PNTKAFFAETISNPQIDVLDIP---GVAEVAHEAGVPLIVDNTIATPYLI----  200 (436)
T ss_pred             EEECC--C----CCHHHHHHhCC---CCCeEEEEECCCCCCCeecCHH---HHHHHHHHcCCEEEEECCCcccccC----
Confidence            76641  1    38899988887   5788999999999999998866   6666799999999999985432111    


Q ss_pred             ChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                      .  ++    +.+ -.+++.|++|.++..|--+|+++
T Consensus       201 ~--pl----~~G-aDivv~S~tK~lgg~G~~i~G~v  229 (436)
T PRK07812        201 R--PL----EHG-ADIVVHSATKYLGGHGTAIAGVI  229 (436)
T ss_pred             C--ch----hcC-CCEEEEecccccCCCCCeEEEEE
Confidence            1  11    222 34667999999998887788876

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.66  E-value=4.9e-13  Score=136.30  Aligned_cols=340  Identities=12%  Similarity=0.036  Sum_probs=186.6

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-CC-cCCCCcchHHHHHHHHHHHhCCCCcccccCc-eeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NK-EYLPIEGLAAFNKVTAELLFGADNSVLKEQR-VATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-~~-~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~-i~~~~t~  158 (467)
                      +.+.||+..|..-..-|.  -.|.|.+++.+.+.... .+ .|.+.....+|-+.+++..-..    ....+ +++  ++
T Consensus        38 G~~ylD~~~g~~~~~lGh--~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~----~~~~~~~f~--~~  109 (442)
T TIGR00709        38 GKEYLDFLAGAGTLALGH--NHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKR----KMDYKLQFP--GP  109 (442)
T ss_pred             CCEEEEccccHhhhcCCC--CCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCc----CCCccEEEe--CC
Confidence            457899988854222233  36788888888775422 11 1223322333444444432110    00123 444  68


Q ss_pred             CchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CC-------C-----CeEEeeeecCCCCCC--------Ch-
Q 012238          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-AR-------V-----PWSEYRYYDPKTVGL--------DF-  216 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~-~G-------~-----~~~~v~~~~~~~~~~--------d~-  216 (467)
                      +|++|.+.+.++........+|+...-+|......... .|       .     .+..++..  .....        +. 
T Consensus       110 sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  187 (442)
T TIGR00709       110 SGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYP--HEYRCPFGIGGEAGSN  187 (442)
T ss_pred             CHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCC--ccccccccCCchhHHH
Confidence            99999999866654444346899889888766543332 22       0     12223321  11111        11 


Q ss_pred             ---hhHHHHHHc---C-CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012238          217 ---EGMIADIKA---A-PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (467)
Q Consensus       217 ---~~l~~~l~~---~-~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~  289 (467)
                         +.+++.+..   . .+...+++-+.++|+....++.+.+++|.++|++||+++|.||++.+|...+   ..+....+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~a~~~~  264 (442)
T TIGR00709       188 ASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSG---TMFAFEHA  264 (442)
T ss_pred             HHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC---chhHHHHc
Confidence               123333321   1 1334455555455555556899999999999999999999999999986432   22332222


Q ss_pred             HhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhh
Q 012238          290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL  369 (467)
Q Consensus       290 ~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~  369 (467)
                       .-.+++++   ++|.++. |+++|+++   .+++ ++.            +.......+.+.+.+++.++...|+.  +
T Consensus       265 -gv~PDiv~---~gK~l~~-G~Pigav~---~~~~-~~~------------~~~~~~~~T~~gnpla~aaa~a~L~~--i  321 (442)
T TIGR00709       265 -GIEPDFVV---MSKAVGG-GLPLAVLL---IAPE-FDA------------WQPAGHTGTFRGNQLAMVTGTEALNY--W  321 (442)
T ss_pred             -CCCCcEEE---EcccccC-CcccEEEE---EchH-Hhc------------cCCCcCCCCCCcCHHHHHHHHHHHHH--H
Confidence             22334444   7999995 99999996   5555 344            22111123445667777777776632  1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCcccccCCcceEEe-c-CC------------C---HH-HHHHHH
Q 012238          370 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSF-T-GL------------N---KA-QSDNMT  429 (467)
Q Consensus       370 ~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~--g~~~~~~~~~~~~g~f~~-~-~l------------~---~~-~~~~ll  429 (467)
                      .+      +...++++++.+++.+.|+ ++  ..|. +..+...|.++.. + +-            +   .. +...++
T Consensus       322 ~~------~~l~~~~~~~g~~l~~~L~-~l~~~~~~-v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (442)
T TIGR00709       322 KD------DNLAQNAQERGERITSFLD-DMIKEHPC-IGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACF  393 (442)
T ss_pred             Hh------cCHHHHHHHHHHHHHHHHH-HHHHhCCC-eeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHH
Confidence            11      1334455566666666665 43  1111 1122334433311 1 10            0   11 233444


Q ss_pred             HcccEEEeCC---C---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          430 NKWHVYMTKD---G---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       430 ~~~gI~v~~g---g---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                       ++||++.+.   |   ||... .+++++++++++++.+++.++
T Consensus       394 -~~Gvl~~~~~~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~  436 (442)
T TIGR00709       394 -ENGLLLETGGREGEVFRLLCPITIDQEECEEGISRFKQAVEEA  436 (442)
T ss_pred             -HCCeEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence             469998765   3   66544 248899999999999988653

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.65  E-value=1.1e-13  Score=137.61  Aligned_cols=211  Identities=12%  Similarity=0.045  Sum_probs=143.4

Q ss_pred             CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCCC
Q 012238          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVP  200 (467)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~  200 (467)
                      .+....|.+.+|++-.+        +..++  +++|+.|+..+  ++..+.+||+|+++...|.+....    ++..|++
T Consensus        61 nPt~~~le~~la~LEg~--------~~a~~--~~SGmaAi~~~--~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~  128 (395)
T PRK08114         61 TLTHFSLQEAMCELEGG--------AGCAL--YPCGAAAVANA--ILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVT  128 (395)
T ss_pred             ChhHHHHHHHHHHHhCC--------CeEEE--EhHHHHHHHHH--HHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcE
Confidence            34566788888887332        35555  68899999987  566688999999999888766554    4668988


Q ss_pred             eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc--CCeeEEeccCCCCCCCC
Q 012238          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK--NHIPFFDVAYQGFASGS  278 (467)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~--~~~li~Deay~~~~~~~  278 (467)
                      +..++.       .|.+.+++.++   +++++|++.+|.||||.+.+.+   +|+++|+++  |+++++|.++..-..  
T Consensus       129 v~~vd~-------~d~~~l~~~l~---~~TrlV~~EtpsNp~~~v~DI~---~Ia~ia~~~g~g~~lvVDnT~a~p~~--  193 (395)
T PRK08114        129 TTWFDP-------LIGADIAKLIQ---PNTKVVFLESPGSITMEVHDVP---AIVAAVRSVNPDAVIMIDNTWAAGVL--  193 (395)
T ss_pred             EEEECC-------CCHHHHHHhcC---CCceEEEEECCCCCCCEeecHH---HHHHHHHHhCCCCEEEEECCCccccc--
Confidence            888764       46788999887   5789999999999999988755   777779997  499999999653221  


Q ss_pred             CCCChhHHHHHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHH
Q 012238          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGA  357 (467)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  357 (467)
                        .++  .    +. .-.+++.|.+|.++-+| .-.|.+   +.+++..+.            ++..........++...
T Consensus       194 --~~p--l----~~-GaDivv~S~tKyl~Ghsdv~~G~v---~~~~~~~~~------------l~~~~~~~G~~~~p~~a  249 (395)
T PRK08114        194 --FKA--L----DF-GIDISIQAGTKYLVGHSDAMIGTA---VANARCWEQ------------LRENSYLMGQMVDADTA  249 (395)
T ss_pred             --cCH--H----Hc-CCcEEEEcCcccccCCCcceeEEE---EcCHHHHHH------------HHHHHHhccCCCCHHHH
Confidence              111  1    11 24588999999887676 444533   356655554            33222223345555554


Q ss_pred             HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       358 ~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      +.+..-|+.          +.-+.++..++...+.+.|+
T Consensus       250 ~l~~rgl~T----------L~lR~~~~~~na~~va~~L~  278 (395)
T PRK08114        250 YMTSRGLRT----------LGVRLRQHEESSLKVAEWLA  278 (395)
T ss_pred             HHHHcCCCc----------HHHHHHHHHHHHHHHHHHHH
Confidence            544333333          33455556666677777776

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.64  E-value=1.8e-13  Score=130.17  Aligned_cols=324  Identities=19%  Similarity=0.247  Sum_probs=211.5

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC------CCcchH---HHHHHHHHHHhCCCCcccccCceee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLA---AFNKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~------~~~G~~---~lr~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      +.|+|=..++       ++++.|+++....+.+.+..+|+      ...-.+   .+-...++.|++..        .+-
T Consensus        27 ~~ieLIASEN-------~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~--------~an   91 (413)
T COG0112          27 EHIELIASEN-------FTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAE--------YAN   91 (413)
T ss_pred             hceeeeeccc-------cCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCC--------ccc
Confidence            6788887655       24889999998888554444442      222233   33334444444432        222


Q ss_pred             eecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH---HhhCCC--CeEEeeeecCCCCCCChhhHHHHHHcCCCC
Q 012238          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI---FNDARV--PWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~---~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (467)
                      ||..+|++|...+  +++++.|||+|+-.+-...+|..-   +...|.  +.+.|+++ .++..+|.|++++...+  .+
T Consensus        92 VQPhSGs~AN~av--~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd-~et~~IDyD~~~k~a~e--~k  166 (413)
T COG0112          92 VQPHSGSQANQAV--YLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVD-PETGLIDYDEVEKLAKE--VK  166 (413)
T ss_pred             cCCCCchHHHHHH--HHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccc-cccCccCHHHHHHHHHH--hC
Confidence            4568888888887  778899999999998766655332   222333  55666664 45788999999999987  56


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc
Q 012238          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (467)
                      +++|+......|-     .-+++++.++|.+.|.++++|.++. ++..++.-.+  ++      ..-.++..|-+|+|  
T Consensus       167 PK~ii~G~SaY~r-----~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~--P~------~~AdvVTtTTHKTl--  231 (413)
T COG0112         167 PKLIIAGGSAYSR-----PIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPN--PL------PHADVVTTTTHKTL--  231 (413)
T ss_pred             CCEEEECcccccc-----ccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCC--CC------CccceEeCCcccCC--
Confidence            6788866544443     2357788888999999999999953 4444432111  11      12458899999997  


Q ss_pred             CCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238          309 YAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  388 (467)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r  388 (467)
                      +|-|-|.|.  +.++++.+.            +.+...+...+.|.....++..+    .+.+..+.+.++..++..++.
T Consensus       232 rGPrGG~Il--~~~eel~kk------------in~aVFPg~qggpl~HviAakaV----a~~Eal~p~fk~Ya~qVv~NA  293 (413)
T COG0112         232 RGPRGGIIL--TNDEELAKK------------INSAVFPGLQGGPLMHVIAAKAV----AFKEALEPEFKEYAKQVVKNA  293 (413)
T ss_pred             CCCCceEEE--eccHHHHHH------------hhhhcCCccCCChHHHHHHHHHH----HHHHHcChhHHHHHHHHHHHH
Confidence            677878875  556677776            77666665554443332222221    222222333567778888889


Q ss_pred             HHHHHHhhhccCCCCCcccccCCcceEEec------CCCHHHHHHHHHcccEEEeCC-------------C-eEEec---
Q 012238          389 QKLFDSLSAKDKSGKDWSFILRQIGMFSFT------GLNKAQSDNMTNKWHVYMTKD-------------G-RISLA---  445 (467)
Q Consensus       389 ~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~------~l~~~~~~~ll~~~gI~v~~g-------------g-Ris~~---  445 (467)
                      +.|.+.|. +.|    ++++....-.++++      +++.+.++.+|++.||.+...             | ||...   
T Consensus       294 kaLAe~l~-~~G----~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~T  368 (413)
T COG0112         294 KALAEALK-ERG----FKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVT  368 (413)
T ss_pred             HHHHHHHH-HcC----CeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHh
Confidence            99999998 887    46665433334433      346788999999999988664             3 77532   


Q ss_pred             --cCChhhHHHHHHHHHHHHHh
Q 012238          446 --GLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       446 --~~~~~~i~~~~~~l~~~l~~  465 (467)
                        ++.+++++++.+.|.++++.
T Consensus       369 trG~~e~e~~~Ia~~I~~vl~~  390 (413)
T COG0112         369 TRGFGEAEMEEIADLIADVLDG  390 (413)
T ss_pred             hcCCCHHHHHHHHHHHHHHHhc
Confidence              34678999999999998875

>PRK02769 histidine decarboxylase; Provisional

Probab=99.64  E-value=1.7e-13  Score=136.31  Aligned_cols=292  Identities=15%  Similarity=0.111  Sum_probs=182.8

Q ss_pred             HHHHHHHHHHHhCCCCcccccCce--eeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeee
Q 012238          129 AAFNKVTAELLFGADNSVLKEQRV--ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRY  206 (467)
Q Consensus       129 ~~lr~aia~~l~~~~~~~~~~~~i--~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~  206 (467)
                      .+.++.++++++..      ++++  ++  |+|||++...+......+.++++|+++.-.+......++.+|.+...++.
T Consensus        68 ~~~~~~~a~l~g~~------~~~~~G~~--TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~  139 (380)
T PRK02769         68 RDVMNFFAELFKIP------FNESWGYI--TNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITS  139 (380)
T ss_pred             HHHHHHHHHHhCCC------CCCCCEEE--ecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceecc
Confidence            45666667776543      3343  55  89999997765222222457899999999999999999999999999988


Q ss_pred             ecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC---CeeEEeccCCCCCCCCCCCCh
Q 012238          207 YDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN---HIPFFDVAYQGFASGSLDNDA  283 (467)
Q Consensus       207 ~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~---~~li~Deay~~~~~~~~~~~~  283 (467)
                      .  .++.+|++.|++.+++...++.+++.+.++|+||.+-+.+   +|+++|+++|   +++++|.++.++...-.+ ..
T Consensus       140 ~--~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~---~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~-~~  213 (380)
T PRK02769        140 L--PNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIK---EIQEILKKIGIDDYYIHADAALSGMILPFVN-NP  213 (380)
T ss_pred             C--CCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHH---HHHHHHHHhCCCceEEEEEecccceeecccC-cc
Confidence            4  3667999999999986444588999999999999988866   5666699998   699999998775432100 00


Q ss_pred             hHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHH---HHhhccCccCCCc---hHHH
Q 012238          284 SSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQ---LKRLARPMYSNPP---VHGA  357 (467)
Q Consensus       284 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~---~~~~  357 (467)
                      ..+ .+ .. .-..+..|.+|.++.| ..+|.++  ..+ +..+.        +...   +.........+.+   .+..
T Consensus       214 ~~~-d~-~~-~vDsis~s~HK~~~~P-~g~G~l~--~r~-~~~~~--------~~~~~~yl~~~d~t~~GSR~g~~~l~l  278 (380)
T PRK02769        214 PPF-SF-AD-GIDSIAISGHKFIGSP-MPCGIVL--AKK-KYVER--------ISVDVDYIGSRDQTISGSRNGHTALLL  278 (380)
T ss_pred             ccC-Cc-cC-CCCEEEECCcccCCCC-CCcEEEE--Eeh-hhhhh--------cccCccccCCCCCCccCCCCcHHHHHH
Confidence            011 11 11 2345678889988733 4468775  243 33333        1000   0000000011122   2222


Q ss_pred             HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEe
Q 012238          358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMT  437 (467)
Q Consensus       358 ~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~  437 (467)
                      .++...+.        ...++++.++..+..+++.+.|+ +.|+   ..+..|.....+|...+.+.    .+++.+...
T Consensus       279 w~aL~~lg--------~~G~~~~~~~~~~la~~l~~~L~-~~g~---~~~~~p~~~~v~f~~~~~~~----~~~w~l~~~  342 (380)
T PRK02769        279 WAAIRSLG--------SKGLRQRVQHCLDMAQYAVDRLQ-ANGI---PAWRNPNSITVVFPCPSERI----WKKWHLATS  342 (380)
T ss_pred             HHHHHHHC--------HHHHHHHHHHHHHHHHHHHHHHH-hCCC---EEEcCCCceEEEEcCCCHHH----HhCeeEccc
Confidence            22222222        23466777888888899999998 7764   22344555544444334332    255556555


Q ss_pred             CCC-eEEecc-CChhhHHHHHHHHHHHHHh
Q 012238          438 KDG-RISLAG-LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       438 ~gg-Ris~~~-~~~~~i~~~~~~l~~~l~~  465 (467)
                      ++. ||.+.. .+.+.++.+++.|.+.+..
T Consensus       343 ~~~~hi~~~~~~~~~~~~~f~~dl~~~~~~  372 (380)
T PRK02769        343 GNQAHIITMPHHNKQQIDSLIDELIFDLKN  372 (380)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence            444 777654 3667889999888877653

>PLN02271 serine hydroxymethyltransferase

Probab=99.64  E-value=4.3e-13  Score=135.41  Aligned_cols=340  Identities=16%  Similarity=0.158  Sum_probs=200.2

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC------CCcchHHHHHHHHHHHhCCCCcccccCce-eeee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAAFNKVTAELLFGADNSVLKEQRV-ATVQ  156 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~------~~~G~~~lr~aia~~l~~~~~~~~~~~~i-~~~~  156 (467)
                      +-|+|=..++       ++++.+++++...+.+.+..+|+      ....+.++.....+.....++..  ..+. +=||
T Consensus       149 ~~l~LIASEN-------~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~--~~~~gaNVQ  219 (586)
T PLN02271        149 KGIELIASEN-------FVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLD--SEKWGVNVQ  219 (586)
T ss_pred             cCeeeccccc-------cCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCc--cccccccee
Confidence            5688876654       23788999988877554444443      23334444333333322222211  1111 2245


Q ss_pred             cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH---------HhhCCCCeEEeeee-cCCCCCCChhhHHHHHHcC
Q 012238          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI---------FNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAA  226 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~---------~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~  226 (467)
                      ..+|+.|...+  +.+++.|||+|+..+..++++...         +...|..+..+++. +++++.+|.+++++.... 
T Consensus       220 p~SGs~AN~aV--~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~-  296 (586)
T PLN02271        220 PYSCTSANFAV--YTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALD-  296 (586)
T ss_pred             eccHHHHHHHH--HHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhh-
Confidence            67899999888  667788999999999877766443         23456554555532 245678999999995543 


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCccC
Q 012238          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (467)
Q Consensus       227 ~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (467)
                       .++++|++....||  ..++.+   ++.++|+++|+++++|.+.. ++...+.  ...++      ..-.++..|.+|+
T Consensus       297 -~rPKLII~g~Sayp--r~~D~~---~i~eIAdevGA~LmvD~AH~aGLIa~g~--~~sP~------~~aDvvt~TTHKt  362 (586)
T PLN02271        297 -FRPKILICGGSSYP--REWDYA---RFRQIADKCGAVLMCDMAHISGLVAAKE--CVNPF------DYCDIVTSTTHKS  362 (586)
T ss_pred             -cCCeEEEECchhcc--CcCCHH---HHHHHHHHcCCEEEEECcccccccccCc--CCCCC------cCCcEEEeCCccc
Confidence             67889998887888  445555   66667999999999999954 3332211  00011      1235889999999


Q ss_pred             cccCCCccceEEEecCCHHHHhhh-----hhhh---HHHHHHHHHhhccCccCCCc-hHHHHHHHHHhCChhhHHHHHHH
Q 012238          306 LGLYAERIGAMNVVCSSSDLAARC-----CEVA---VIQVKSQLKRLARPMYSNPP-VHGARIVANVVGNPALFDEWKAE  376 (467)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~-----~~~~---~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~L~~~~~~~~~~~~  376 (467)
                      +  .|-|-|.+.  +.+ +.....     .|+.   ..++...+.....+...+.+ .....+.+..+.     +....+
T Consensus       363 L--rGPrGG~I~--~r~-~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalk-----ea~~~e  432 (586)
T PLN02271        363 L--RGPRGGIIF--YRK-GPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALK-----QVATPE  432 (586)
T ss_pred             C--CCCCceEEE--ecc-cccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHH-----HHhChH
Confidence            8  344447665  332 110000     0000   00122225544444333332 222222222222     111122


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceE-EecC-----CCHHHHHHHHHcccEEEeC------------
Q 012238          377 MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF-SFTG-----LNKAQSDNMTNKWHVYMTK------------  438 (467)
Q Consensus       377 l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f-~~~~-----l~~~~~~~ll~~~gI~v~~------------  438 (467)
                      ..+..++..++.+.|.+.|. +.|    ++++....-.+ ++++     ++...+++.|++.||.+..            
T Consensus       433 fk~Ya~QVv~NAkaLA~~L~-~~G----~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~p  507 (586)
T PLN02271        433 YKAYMQQVKKNAQALASALL-RRK----CRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTISP  507 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HCC----CeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCCCC
Confidence            45677888888999999998 877    45554333334 4444     3678899999999998743            


Q ss_pred             CC-eEEec-----cCChhhHHHHHHHHHHHHH
Q 012238          439 DG-RISLA-----GLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       439 gg-Ris~~-----~~~~~~i~~~~~~l~~~l~  464 (467)
                      +| ||...     ++.+++++++.+.|.++++
T Consensus       508 sGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~  539 (586)
T PLN02271        508 GGVRIGTPAMTSRGCLESDFETIADFLLRAAQ  539 (586)
T ss_pred             CcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence            34 87632     3477899999888888875

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.64  E-value=4.9e-14  Score=139.93  Aligned_cols=313  Identities=14%  Similarity=0.063  Sum_probs=181.3

Q ss_pred             CCCchHHHHHHHHHHHhcC---CCCcCCCC-------cchHHHHHHHHHHHhCCCCcccccCceeeeecCC-chhHHHHH
Q 012238           99 QPYVLDVVKKAENLMLERG---ENKEYLPI-------EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS-GTGSLRLA  167 (467)
Q Consensus        99 ~p~~~~~v~~a~~~~~~~~---~~~~Y~~~-------~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g-gt~al~l~  167 (467)
                      ...+|+.|++++.+.+...   ....|...       .-..+.|+.++++++...     +++|++  |.| +|++++.+
T Consensus         7 p~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~-----~~~vvf--~~gs~T~a~~~~   79 (355)
T cd00611           7 PAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPD-----NYKVLF--LQGGATGQFAAV   79 (355)
T ss_pred             CCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-----CceEEE--EcCCchHHHHHH
Confidence            3345899999998876210   00112111       336788999999976422     567888  877 99999998


Q ss_pred             HHHHHHhC---CCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCC-hhhHHHHHHcCCCCcEEEEeCCCCCCCC
Q 012238          168 AALIERYF---PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD-FEGMIADIKAAPGGSFILLHGCAHNPTG  243 (467)
Q Consensus       168 ~~~l~~~~---~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d-~~~l~~~l~~~~~~~~~i~i~~p~NPTG  243 (467)
                        +...+.   +||.|++ .|....+..+++..|++++.++.++...+ .+ ++..+..+.   +++++|.+++..|.||
T Consensus        80 --~~~l~~~~~~~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~~~lV~~~h~~t~tG  152 (355)
T cd00611          80 --PLNLLGDKGTADYVVT-GAWSAKAAKEAKRYGGVVVIVAAKEEGKY-TKIPDVETWDLA---PDAAYVHYCSNETIHG  152 (355)
T ss_pred             --HHhcCCCCCeEEEEEC-CHHHHHHHHHHHhcCCCcEEEecccccCC-CCCCCHhhcCCC---CCCCEEEEeCCccccc
Confidence              344454   4444433 33333445577889999999987322111 13 222222333   5778889999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCH
Q 012238          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (467)
Q Consensus       244 ~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~  323 (467)
                      ..++     +   +++.+|+++++|.+ +.+..-..  +..      +.  + +.+.|..|.+|++|  +|.++   .++
T Consensus       153 ~~~~-----~---i~~~~g~~~~VDa~-qs~g~~~i--dv~------~~--~-~~~ss~~K~lGP~G--~g~l~---~~~  207 (355)
T cd00611         153 VEFD-----E---VPDTGGVPLVADMS-SNILSRPI--DVS------KF--G-VIYAGAQKNLGPAG--VTVVI---VRK  207 (355)
T ss_pred             EEcc-----e---ecccCCCeEEEEcc-ccccCCCC--CHH------Hh--C-EEEeecccccCCCc--eEEEE---ECH
Confidence            9743     2   34559999999999 55543322  211      11  2 35566789999888  57775   455


Q ss_pred             HHHhhhhhhh---HHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          324 DLAARCCEVA---VIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       324 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                      +..++ .++.   +.+.......  ......++.....++..+|+   +.  .+. .++++.++.++..+++++.|+ ++
T Consensus       208 ~~~~~-~~~~~~~~~~~~~~~~~--~~~~~Tpn~~~i~~L~aal~---~l--~~~gg~e~i~~~~~~l~~~l~~~l~-~~  278 (355)
T cd00611         208 DLLGK-ARKITPSMLNYKTHADN--NSLYNTPPTFAIYMMGLVLK---WL--KEQGGVEAMEKRNRQKAQLLYDTID-NS  278 (355)
T ss_pred             HHHhh-cccCCCCcccHHHHHhc--CCCCCCChHHHHHHHHHHHH---HH--HHcCCHHHHHHHHHHHHHHHHHHHH-hC
Confidence            55554 1110   1111111111  11122344444344443332   11  122 377889999999999999999 87


Q ss_pred             -CCCCCccccc--CCc-ceEEec--CC--CHHHHHHHHHcccEEEeCC----C--eEEeccC-ChhhHHHHHHHHHHH
Q 012238          400 -KSGKDWSFIL--RQI-GMFSFT--GL--NKAQSDNMTNKWHVYMTKD----G--RISLAGL-SLAKCEYLADAIIDS  462 (467)
Q Consensus       400 -g~~~~~~~~~--~~~-g~f~~~--~l--~~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~~~i~~~~~~l~~~  462 (467)
                       |+..  ....  ... ....|.  +.  +.++...+. +.|+.+.++    |  |+|+... +.+|+++++++|+++
T Consensus       279 ~gl~~--~~~~~~~rs~~vvsf~~~~~~l~~~~~~~~~-r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~  353 (355)
T cd00611         279 NGFYR--GPVDKRARSRMNVPFRLGKEELEKEFLKEAE-AAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF  353 (355)
T ss_pred             ccccc--cCCCHHHcCceEEEEEcCChhhhHHHHHHHH-HCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence             5310  1111  122 213222  32  223334443 469875555    3  9998654 679999999999885

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.64  E-value=7.8e-13  Score=134.74  Aligned_cols=341  Identities=13%  Similarity=0.103  Sum_probs=188.5

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCC--cCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK--EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~--~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.||+..|..-..-|.  -.|.|.+++.+.++.....  .+.+.....+|-+.+++.....     ..+++.+  +++
T Consensus        41 G~~ylD~~~g~~~~~lGH--~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~-----~~~~v~f--~~S  111 (445)
T PRK08593         41 GKTYIDLLASASSQNVGH--APPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGD-----FEKRVTF--GLS  111 (445)
T ss_pred             CCEEEECCccHHhhcCCC--CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCC-----CCCEEEE--CCc
Confidence            347899977643112233  3678888888877542211  1112333344555555542111     0247888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-HHhhCCC-------------CeEEeeeecCCC--CC-CC-------
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKN-IFNDARV-------------PWSEYRYYDPKT--VG-LD-------  215 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~-~~~~~G~-------------~~~~v~~~~~~~--~~-~d-------  215 (467)
                      |++|.+.+.++........+|+...-+|.+... .+...+.             .++.+|..+...  +. .+       
T Consensus       112 GseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  191 (445)
T PRK08593        112 GSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEY  191 (445)
T ss_pred             hHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHH
Confidence            999999986554334333578888888876533 2222111             122333211100  00 11       


Q ss_pred             hhhHHHHHHcC--CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc
Q 012238          216 FEGMIADIKAA--PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR  292 (467)
Q Consensus       216 ~~~l~~~l~~~--~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~  292 (467)
                      ++.+++.+...  +++..++++...+...|.. ++.+.+++|.++|++||+++|+||++.+|...+   ..+....+ .-
T Consensus       192 ~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG---~~~a~~~~-gv  267 (445)
T PRK08593        192 LAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTG---KWSSISHF-NI  267 (445)
T ss_pred             HHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---hHHHHHhc-CC
Confidence            13344444321  2456677777777777886 688999999999999999999999998875321   11112111 21


Q ss_pred             CCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHH
Q 012238          293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDE  372 (467)
Q Consensus       293 ~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~  372 (467)
                      .++   +-+++|.++ .|+++|+++   .++++++.            +.......+.+.+++++.++...|+.  +   
T Consensus       268 ~pD---i~t~gK~l~-~G~p~gav~---~~~~i~~~------------~~~~~~~~T~~~~pl~~aaa~a~l~~--l---  323 (445)
T PRK08593        268 TPD---LMSFGKSLA-GGMPMSAIV---GRKEIMES------------LEAPAHLFTTGANPVSCAAALATIDM--I---  323 (445)
T ss_pred             CCC---Eeeeccccc-CCcccEEEE---EcHHHHhh------------hccCCCCCCCCCCHHHHHHHHHHHHH--H---
Confidence            233   337899998 789999985   77777776            43222222334555666655555431  1   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh---ccCCCCCcccccCCcceEEe--cC-----C-C----HHHHHHHHHcccEEEe
Q 012238          373 WKAEMEMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSF--TG-----L-N----KAQSDNMTNKWHVYMT  437 (467)
Q Consensus       373 ~~~~l~~~~~~~~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f~~--~~-----l-~----~~~~~~ll~~~gI~v~  437 (467)
                       ++  +...++.+++-+++.+.|++   +.+.   +..+...|.++-+  ..     . +    ..+...+++ +||++.
T Consensus       324 -~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~---v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~  396 (445)
T PRK08593        324 -ED--ESLLQRSAEKGEYARKRFDQWVSKYNF---VGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFE-HGVVII  396 (445)
T ss_pred             -Hh--ccHHHHHHHHHHHHHHHHHHHHhcCCc---EEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHH-CCeEEe
Confidence             10  12333344444444444440   2221   1112223322211  11     0 1    123445555 699997


Q ss_pred             CC-C---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          438 KD-G---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       438 ~g-g---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +. +   |++.. .+++++++++++++.++++++
T Consensus       397 ~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  430 (445)
T PRK08593        397 AVAGNVLRFQPPLVITYEQLDTALNTIEQAFTAL  430 (445)
T ss_pred             ccCCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence            74 3   66544 248899999999999998764

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.64  E-value=1e-13  Score=138.07  Aligned_cols=190  Identities=20%  Similarity=0.123  Sum_probs=128.2

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEE
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI  182 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv  182 (467)
                      .+...+++.+.+..+....+  ..-..+|.+.+++++..        ++++.  +++||.|+++++..+ .+.+||+|++
T Consensus         4 ~~e~~~~v~~~l~s~~~~~~--g~~~~~fE~~~a~~~g~--------~~~~~--~~sgt~Al~~al~~l-~~~~gdeVi~   70 (363)
T PF01041_consen    4 TEEEIDAVLEVLRSGWLSTY--GPYVEEFEKEFAEYFGV--------KYAVA--VSSGTSALHLALRAL-GLGPGDEVIV   70 (363)
T ss_dssp             HHHHHHHHHHHHHHTCCSSS--SHHHHHHHHHHHHHHTS--------SEEEE--ESSHHHHHHHHHHHT-TGGTTSEEEE
T ss_pred             CHHHHHHHHHHHHhCCccCC--CHHHHHHHHHHHHHhCC--------CeEEE--eCChhHHHHHHHHhc-CCCcCceEec
Confidence            45566677777766542322  34578999999999753        37777  899999999983221 2348999999


Q ss_pred             cCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 012238          183 SSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN  262 (467)
Q Consensus       183 ~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~  262 (467)
                      |.-+|......+...|++++.++++ ++++.+|++.+++.++   +++++|++.+..   |...   ++.+|.++|+++|
T Consensus        71 p~~t~~~~~~ai~~~G~~pv~~Di~-~~~~~id~~~~~~~i~---~~t~ai~~~h~~---G~~~---d~~~i~~~~~~~~  140 (363)
T PF01041_consen   71 PAYTFPATASAILWAGAEPVFVDID-PETLNIDPEALEKAIT---PKTKAILVVHLF---GNPA---DMDAIRAIARKHG  140 (363)
T ss_dssp             ESSS-THHHHHHHHTT-EEEEE-BE-TTTSSB-HHHHHHHHH---TTEEEEEEE-GG---GB------HHHHHHHHHHTT
T ss_pred             CCCcchHHHHHHHHhccEEEEEecc-CCcCCcCHHHHHHHhc---cCccEEEEecCC---CCcc---cHHHHHHHHHHcC
Confidence            9999999999999999999999996 6789999999999999   567777765433   5543   6778888899999


Q ss_pred             CeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecC--ccCcccCCCccceEEEecCCHHHHhh
Q 012238          263 HIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       263 ~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                      ++||+|.+......-    ....   .-.  ...+.+.||  +|.+. .|. -|.++  +.++++.++
T Consensus       141 i~lIeD~a~a~g~~~----~g~~---~G~--~gd~~~fSf~~~K~i~-~ge-GG~v~--~~~~~~~~~  195 (363)
T PF01041_consen  141 IPLIEDAAQAFGARY----KGRP---VGS--FGDIAIFSFHPTKIIT-TGE-GGAVV--TNDPELAER  195 (363)
T ss_dssp             -EEEEE-TTTTT-EE----TTEE---TTS--SSSEEEEESSTTSSS--SSS--EEEE--ESTHHHHHH
T ss_pred             CcEEEccccccCcee----CCEe---ccC--CCCceEecCCCCCCCc-CCC-CeeEE--ecHHHHHHH
Confidence            999999994432210    0000   001  234556665  68885 554 35554  788888877

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.64  E-value=2.9e-13  Score=134.58  Aligned_cols=303  Identities=14%  Similarity=0.079  Sum_probs=185.7

Q ss_pred             CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcch-HHHHhhCC
Q 012238          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH-KNIFNDAR  198 (467)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~-~~~~~~~G  198 (467)
                      ..|.......+|.+++++++...        .++.  +++|+.|++++  +...+.|||.|  +..+|... ...+...|
T Consensus        72 d~Yagd~s~~~LE~~vAe~lG~e--------~aV~--v~sGTaAl~ll--~~l~v~pGd~V--p~n~~f~Tt~ahI~~~G  137 (460)
T PRK13237         72 EAYAGSRNFYHLEETVQEYYGFK--------HVVP--THQGRGAENLL--SRIAIKPGQYV--PGNMYFTTTRYHQELNG  137 (460)
T ss_pred             hhhcCCCcHHHHHHHHHHHHCCC--------eEEE--eCCHHHHHHHH--HHhCCCCcCEE--CCccchHhhHHHHHhCC
Confidence            56888888999999999996543        5666  89999999986  33346799965  55544433 33367788


Q ss_pred             CCeEEeeee--------cCCCCCCChhhHHHHHHcC-CCCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEe
Q 012238          199 VPWSEYRYY--------DPKTVGLDFEGMIADIKAA-PGGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFD  268 (467)
Q Consensus       199 ~~~~~v~~~--------~~~~~~~d~~~l~~~l~~~-~~~~~~i~i~~p~NPT-G~~~~~~~l~~l~~~~~~~~~~li~D  268 (467)
                      +.++.+..+        ++.++.+|++.+++.+++. +.++.++.+..++|-. |...+.++++++.++|++||+.||+|
T Consensus       138 a~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~D  217 (460)
T PRK13237        138 GIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFD  217 (460)
T ss_pred             cEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEE
Confidence            855444311        2456889999999999853 2344455556678888 78899999999999999999999999


Q ss_pred             ccCCCC-CC-C---CCCCChhHHHHHHh--cCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHH
Q 012238          269 VAYQGF-AS-G---SLDNDASSVRLFAT--RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQL  341 (467)
Q Consensus       269 eay~~~-~~-~---~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l  341 (467)
                      .+...- .+ -   .......++...+.  ......+..|++|.++.+ . -|++.  +.++++.++            +
T Consensus       218 aAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~-~-GG~i~--t~D~eL~~~------------~  281 (460)
T PRK13237        218 ATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVN-I-GGFLA--MNDEELFDE------------A  281 (460)
T ss_pred             CcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCC-C-ceEEE--ECCHHHHHH------------H
Confidence            984311 00 0   00011112221111  112456788899999854 1 25554  789988887            5


Q ss_pred             HhhccC-----ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEE
Q 012238          342 KRLARP-----MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFS  416 (467)
Q Consensus       342 ~~~~~~-----~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~  416 (467)
                      +...-.     .+.+.+.-...+++.-|.+. ...   +++..+.    ...++|.+.|. +.|+    .+..|.||--+
T Consensus       282 r~~~~~~eG~~tygg~~grd~~alAvgl~E~-~~~---~y~~~ri----~~~~~l~~~L~-~~Gv----pv~~p~ggH~v  348 (460)
T PRK13237        282 KELVVVYEGMPSYGGMAGRDMEAMAIGIEES-VQY---EYIEHRV----GQVRYLGEKLL-AAGV----PIVEPVGGHAV  348 (460)
T ss_pred             HHhccccCCCcCCCChhhhHHHHHHhHHHhh-chH---HHHHHHH----HHHHHHHHHHH-HCCC----ceecCCCceEE
Confidence            444211     12222221222222222211 110   1122222    34567888888 8885    56677777546


Q ss_pred             ecC-------C------CHHHHHHHHHcccEEEeCC-----------C----------eEEecc--CChhhHHHHHHHHH
Q 012238          417 FTG-------L------NKAQSDNMTNKWHVYMTKD-----------G----------RISLAG--LSLAKCEYLADAII  460 (467)
Q Consensus       417 ~~~-------l------~~~~~~~ll~~~gI~v~~g-----------g----------Ris~~~--~~~~~i~~~~~~l~  460 (467)
                      |++       +      ...++..|-.+.||-...-           |          |+.+..  .+.+++++++++|.
T Consensus       349 ~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~  428 (460)
T PRK13237        349 FLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVI  428 (460)
T ss_pred             EEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHH
Confidence            653       1      1234555656667744321           1          887653  47789999999999


Q ss_pred             HHHHh
Q 012238          461 DSYHN  465 (467)
Q Consensus       461 ~~l~~  465 (467)
                      .+.++
T Consensus       429 ~~~~~  433 (460)
T PRK13237        429 KLYKH  433 (460)
T ss_pred             HHHHh
Confidence            88764

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.63  E-value=8.5e-13  Score=127.34  Aligned_cols=337  Identities=15%  Similarity=0.086  Sum_probs=203.2

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      .+.+.|||..|.--+.-+.  -+|.+.+++++.++.-+  +..| ...-..+|-+.+++..    +   ..+++++  ++
T Consensus        40 ~G~~YlDf~~Giav~~lGH--~hP~iv~al~~Q~~kl~h~sn~~-~~~~~~~la~~L~~~s----~---~~d~vff--~N  107 (404)
T COG4992          40 QGREYLDFAAGIAVNNLGH--CHPALVEALKEQAEKLWHVSNLF-YNEPQAELAEKLVELS----P---FADRVFF--CN  107 (404)
T ss_pred             CCCEeeeeccceeeeccCC--CCHHHHHHHHHHHHHhhhccccc-CChHHHHHHHHHHhhC----c---cccEEEE--cC
Confidence            4568999998865333343  36888888888664421  1233 2222334444444442    1   1579999  99


Q ss_pred             CchhHHHHHHHHHHHhCC---CCEEEEcCCCCcchHHHHhhCCCCeEEe----eeecCCCC--CCChhhHHHHHHcCCCC
Q 012238          159 SGTGSLRLAAALIERYFP---GAKVLISSPTWGNHKNIFNDARVPWSEY----RYYDPKTV--GLDFEGMIADIKAAPGG  229 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~~---gd~Vlv~~P~y~~~~~~~~~~G~~~~~v----~~~~~~~~--~~d~~~l~~~l~~~~~~  229 (467)
                      +|++|++.+..+-..+..   .-+|+....+|..-....-..+.+..+-    |+.+.-.+  --|++.+++++.   +.
T Consensus       108 SGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~---~~  184 (404)
T COG4992         108 SGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAID---ED  184 (404)
T ss_pred             CcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhc---cC
Confidence            999999999776655553   2378888887764332222222222111    11110000  148899999998   58


Q ss_pred             cEEEEeCCCCCCCCCCCCH-HHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc
Q 012238          230 SFILLHGCAHNPTGIDPTP-EQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~-~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (467)
                      +..+++-.-+=-.|+..+. +-++++-++|++||+++|.||+-.++.-.+   ..+....+ .-.++++   ++.|.+| 
T Consensus       185 taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTG---k~fA~e~~-gV~PDI~---tlaK~Lg-  256 (404)
T COG4992         185 TAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTG---KLFAYEHY-GVEPDIL---TLAKALG-  256 (404)
T ss_pred             eEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccc---hHHHHHHh-CCCCCEE---Eeecccc-
Confidence            8888888888888987755 558999999999999999999966765332   22322111 2223444   4579999 


Q ss_pred             CCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238          309 YAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  388 (467)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r  388 (467)
                      .|+.+|.++   ..++..+.            +..-....+.+-+.++..++..+|+--  .      -+...++.+++-
T Consensus       257 GG~PigA~l---a~~~~~~~------------~~~G~HgSTfGGNpLacAv~~a~l~~l--~------~e~ll~~v~~~g  313 (404)
T COG4992         257 GGFPIGAML---ATEEIASA------------FTPGDHGSTFGGNPLACAVALAVLEVL--L------EEGLLENVREKG  313 (404)
T ss_pred             CCccceeeE---Echhhhhc------------CCCCcccCCCCcCHHHHHHHHHHHHHH--c------chhHHHHHHHHH
Confidence            889999996   44444443            333333345566677766666555311  0      013444455555


Q ss_pred             HHHHHHhhhccCCCC-CcccccCCcceEEecCC--C---HHHHHHHHHcccEEEeCCC----eEEecc-CChhhHHHHHH
Q 012238          389 QKLFDSLSAKDKSGK-DWSFILRQIGMFSFTGL--N---KAQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEYLAD  457 (467)
Q Consensus       389 ~~l~~~l~~~~g~~~-~~~~~~~~~g~f~~~~l--~---~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~~~i~~~~~  457 (467)
                      ++|.+.|+ ++.-+. .++-+... |+++=+.+  +   .++++.+.+ .|+++.+.|    |+.-.- +++++++++++
T Consensus       314 ~~~~~~L~-~l~~~~~~v~~vRG~-GLmiGiel~~~~~a~~~~~~~~~-~gvL~~~a~~~ViR~~PpL~i~~eei~~~~~  390 (404)
T COG4992         314 EYLLQRLR-ELKRRYPLVKEVRGR-GLMIGIELKEPYRARDIVRALRE-EGVLVLPAGPNVIRFLPPLVITEEEIDEALD  390 (404)
T ss_pred             HHHHHHHH-HHhhcCCceeeeecc-eeEEEEEecCcccHHHHHHHHHH-CCeEEecCCCCeEEecCCccCCHHHHHHHHH
Confidence            66666666 542110 12222222 33322222  2   345666555 599998887    776443 48899999999


Q ss_pred             HHHHHHHhc
Q 012238          458 AIIDSYHNV  466 (467)
Q Consensus       458 ~l~~~l~~~  466 (467)
                      +|.+++++.
T Consensus       391 ~l~~~l~~~  399 (404)
T COG4992         391 ALERALAAA  399 (404)
T ss_pred             HHHHHHHHh
Confidence            999998754

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.63  E-value=3.7e-13  Score=137.58  Aligned_cols=335  Identities=16%  Similarity=0.143  Sum_probs=186.2

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC------CCcchHHHHHH----HHHHHhCCCCcccccCce-
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAAFNKV----TAELLFGADNSVLKEQRV-  152 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~------~~~G~~~lr~a----ia~~l~~~~~~~~~~~~i-  152 (467)
                      +.|+|-..++       ++++.+++++...+...+..+|+      ......++.+.    ..+.+...      .+.+ 
T Consensus        35 ~~l~liasen-------~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~------~~~~~  101 (475)
T PLN03226         35 KGLELIASEN-------FTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLD------PEKWG  101 (475)
T ss_pred             cCeeEecCCc-------cCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCC------cceeE
Confidence            6788887665       23788999998887433333332      22334444431    22222222      3333 


Q ss_pred             eeeecCCchhHHHHHHHHHHHhCCCCEEEEcC---CCCcchHHHHh---hCCCCe--E--EeeeecCCCCCCChhhHHHH
Q 012238          153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISS---PTWGNHKNIFN---DARVPW--S--EYRYYDPKTVGLDFEGMIAD  222 (467)
Q Consensus       153 ~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~---P~y~~~~~~~~---~~G~~~--~--~v~~~~~~~~~~d~~~l~~~  222 (467)
                      +-+|..+|+.|...+  +.+++.|||+|+..+   .++..+.....   ..+...  .  .+.. +.+++.+|++.+++.
T Consensus       102 ~nv~~~SG~~AN~av--~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~-~~~~g~iD~d~Le~~  178 (475)
T PLN03226        102 VNVQPLSGSPANFAV--YTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRL-DESTGLIDYDKLEKK  178 (475)
T ss_pred             EecCcCchHHHHHHH--HHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeee-cCCCCCcCHHHHHHH
Confidence            445668888888877  666788999999854   34444333221   111111  1  2333 245678999999999


Q ss_pred             HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecC
Q 012238          223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY  302 (467)
Q Consensus       223 l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  302 (467)
                      +.+.  +++++++. .++ +|...+.+   +|.++|+++|.++++|+++..-..+. +....++    +  .-.++++|+
T Consensus       179 l~~~--~pklIv~~-~S~-~s~~~D~a---~i~~ia~~~ga~LlvD~AH~~Gli~~-~~~~~p~----~--~~Div~~t~  244 (475)
T PLN03226        179 AMLF--RPKLIIAG-ASA-YPRDWDYA---RMRKIADKVGALLMCDMAHISGLVAA-QEAASPF----E--YCDVVTTTT  244 (475)
T ss_pred             Hhhc--CCeEEEEe-cCc-CCCccCHH---HHHHHHHHcCCEEEEEchhhhCcccC-CCCCCCC----C--CCeEEEecC
Confidence            8753  44555543 233 56666655   67777999999999999854222111 1111111    1  235789999


Q ss_pred             ccCc-ccCCCccceEEEecCCHHHHhhhhhh--hHHHHHHHHHhhccCccC-CCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          303 SKNL-GLYAERIGAMNVVCSSSDLAARCCEV--AVIQVKSQLKRLARPMYS-NPPVHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       303 SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                      +|++ |+.|   |++.   .+++.++.....  .+.++...+.....+.+. +++.....++..+|..     ......+
T Consensus       245 hK~L~GP~G---g~I~---~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~-----i~~~~~~  313 (475)
T PLN03226        245 HKSLRGPRG---GMIF---FRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQ-----AMTPEFK  313 (475)
T ss_pred             cccccCCCc---eEEE---EchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHH-----HhCcCHH
Confidence            9998 5444   6664   344433110000  000011112222222233 3332222222222221     1011245


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCc-ceEEec-----CCCHHHHHHHHHcccEEEeCC------------C
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQI-GMFSFT-----GLNKAQSDNMTNKWHVYMTKD------------G  440 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~-g~f~~~-----~l~~~~~~~ll~~~gI~v~~g------------g  440 (467)
                      +.++++.++.++|.+.|. +.|    +++..+.. .-.+++     +++...+.+.|++.||.+..+            |
T Consensus       314 ~~~~~~~~na~~L~~~L~-~~G----~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~g  388 (475)
T PLN03226        314 AYQKQVKANAAALANRLM-SKG----YKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGG  388 (475)
T ss_pred             HHHHHHHHHHHHHHHHHH-hCC----CEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCC
Confidence            678888899999999998 777    45544211 112222     456677888888889988643            2


Q ss_pred             -eE-----EeccCChhhHHHHHHHHHHHHH
Q 012238          441 -RI-----SLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       441 -Ri-----s~~~~~~~~i~~~~~~l~~~l~  464 (467)
                       |+     .-.++++++++++.+.|.++++
T Consensus       389 iRiGt~~lt~~g~~~~d~~~ia~~i~~~~~  418 (475)
T PLN03226        389 VRIGTPAMTSRGLVEKDFEKVAEFLHRAVT  418 (475)
T ss_pred             cccCcHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence             55     3334588999999999999987

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.63  E-value=3.1e-13  Score=136.25  Aligned_cols=322  Identities=12%  Similarity=0.066  Sum_probs=193.5

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcc----hHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh----
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEG----LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY----  174 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G----~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~----  174 (467)
                      .+.+.+++...++... ..+.....    ..+.++.++++++..    -..+++....|+|||+|+.++.......    
T Consensus        54 ~p~~~~~~~~~l~~~~-~np~s~~~~~~le~~~~~~la~llg~~----~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~  128 (431)
T TIGR01788        54 EPEARKLMDETINKNM-IDKDEYPQTAEIENRCVNMLADLWHAP----AKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKR  128 (431)
T ss_pred             CHHHHHHHHHHHhcCC-CCcccCccHHHHHHHHHHHHHHHhCCC----CCCCCCeEEEechHHHHHHHHHHHHHHHHHHH
Confidence            6668888888775322 12211222    344455555554321    0013454433799999999873221100    


Q ss_pred             --CCC-----CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q 012238          175 --FPG-----AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPT  247 (467)
Q Consensus       175 --~~g-----d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~  247 (467)
                        ..|     ..|+++.-.+..+...++..|++++.+|+++ .++.+|++.|++.++   +++.+|+++..+|.||.+.+
T Consensus       129 ~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~-~~~~vd~~~L~~~i~---~~t~lV~~t~g~t~tG~idp  204 (431)
T TIGR01788       129 MEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDP-GRYVIDPEQVVEAVD---ENTIGVVCILGTTYTGEYED  204 (431)
T ss_pred             HHhcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCC-CceeeCHHHHHHHHh---hCCeEEEEEeCCCCCcccCC
Confidence              112     3788888999999999999999999999853 345799999999998   56789999999999999988


Q ss_pred             HHHHHHHHHHHHhc------CCeeEEeccCCCCC----CCCCCCChhHHHHHHhcCCeEEEEecCccCc-ccCCCccceE
Q 012238          248 PEQWEKIADVIQEK------NHIPFFDVAYQGFA----SGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAM  316 (467)
Q Consensus       248 ~~~l~~l~~~~~~~------~~~li~Deay~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~  316 (467)
                      .+   +|+++|+++      |+++.+|.+|.++.    .+..     .. .+ ....-..+..|.+|.+ ++.|  +|.+
T Consensus       205 i~---~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~-----~~-~~-~~~~~DSis~s~HK~~~~P~g--~G~l  272 (431)
T TIGR01788       205 VK---ALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDL-----EW-DF-RLPRVKSINVSGHKYGLVYPG--VGWV  272 (431)
T ss_pred             HH---HHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCc-----hh-hc-CCCCceEEEECchhccCCCCC--cEEE
Confidence            76   556668888      99999999988543    2211     11 11 1112344678889976 7666  5877


Q ss_pred             EEecCCHHHH-hhhhhhhHHHHHHHHHh---hccC----ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238          317 NVVCSSSDLA-ARCCEVAVIQVKSQLKR---LARP----MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  388 (467)
Q Consensus       317 ~~v~~~~~~~-~~~~~~~~~~~~~~l~~---~~~~----~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r  388 (467)
                      +  ..+++.. +.            +..   +...    .....+.-+..++..++.   +...-...++++.++..+..
T Consensus       273 ~--~r~~~~l~~~------------~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~---l~~lG~~G~~~i~~~~~~la  335 (431)
T TIGR01788       273 I--WRDEEALPEE------------LIFHVNYLGGDEPTFTLNFSRPANQVIAQYYN---FLRLGREGYRKIMQNSLDVA  335 (431)
T ss_pred             E--EeChHHcchh------------heecccccCCCCCCcceecCchHHHHHHHHHH---HHHhcHHHHHHHHHHHHHHH
Confidence            5  2443322 21            110   0000    000011111111111110   11001234667778888888


Q ss_pred             HHHHHHhhhccCCCCCcccccC--CcceEEec--C-----CCHHHHHHHHHcccEEE----eCC---C----eEEec-cC
Q 012238          389 QKLFDSLSAKDKSGKDWSFILR--QIGMFSFT--G-----LNKAQSDNMTNKWHVYM----TKD---G----RISLA-GL  447 (467)
Q Consensus       389 ~~l~~~l~~~~g~~~~~~~~~~--~~g~f~~~--~-----l~~~~~~~ll~~~gI~v----~~g---g----Ris~~-~~  447 (467)
                      +++.+.|+ +.+.   |+.+.+  ..+...|.  +     .+...+.+.|++.|+.+    .|.   |    |+++. ..
T Consensus       336 ~~l~~~L~-~~~~---~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~  411 (431)
T TIGR01788       336 RYLAEEIA-KLGP---FEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGF  411 (431)
T ss_pred             HHHHHHHH-hCCC---EEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCC
Confidence            99999998 7642   565543  45554443  2     33344444455569863    332   3    88774 34


Q ss_pred             ChhhHHHHHHHHHHHHHhc
Q 012238          448 SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       448 ~~~~i~~~~~~l~~~l~~~  466 (467)
                      +++.++.+++.|.+++.++
T Consensus       412 ~~~~~~~~~~~~~~~~~~~  430 (431)
T TIGR01788       412 SRDLAELLIEDIEAALAYL  430 (431)
T ss_pred             CHHHHHHHHHHHHHHHHhh
Confidence            6789999999999998765

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.63  E-value=4.4e-13  Score=130.61  Aligned_cols=327  Identities=17%  Similarity=0.154  Sum_probs=199.7

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC-CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      ...||+..|.-..--+.  -+|.|.+|+++.+..+.  .|. |....-++-+.+.+....       -+.|-+  +++||
T Consensus        53 n~YIDy~~~~Gp~ilGH--~~p~V~~Av~~~l~~G~--~fg~Pte~Ei~~Aell~~~~p~-------~e~vrf--vnSGT  119 (432)
T COG0001          53 NEYIDYVLGWGPLILGH--AHPAVVEAVQEQLERGL--SFGAPTELEVELAELLIERVPS-------IEKVRF--VNSGT  119 (432)
T ss_pred             CEeeehhccCcccccCC--CCHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHhcCc-------ccEEEE--ecchh
Confidence            47888887753221222  36889999999998874  443 443333344444444211       367877  89999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CC--C-----------------CeEEeeeecCCCCCCChhhHHH
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-AR--V-----------------PWSEYRYYDPKTVGLDFEGMIA  221 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~-~G--~-----------------~~~~v~~~~~~~~~~d~~~l~~  221 (467)
                      +|...+.++-..+..-|+|+..+-||..+.+.+.. .|  .                 .++.+|+       .|++.+++
T Consensus       120 EAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~y-------ND~~al~~  192 (432)
T COG0001         120 EATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPY-------NDLEALEE  192 (432)
T ss_pred             HHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecC-------CCHHHHHH
Confidence            99999877666666779999999999877665432 22  1                 1122222       49999999


Q ss_pred             HHHcCCCCcE-EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEe
Q 012238          222 DIKAAPGGSF-ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (467)
Q Consensus       222 ~l~~~~~~~~-~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  300 (467)
                      ++++.++... +|+-+-..|--=+...++-++.|.++|+++|.++|.||+..+|...-  ....   ....-.++   +.
T Consensus       193 ~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~--gGaq---~~~gi~PD---lt  264 (432)
T COG0001         193 AFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVAL--GGAQ---GYYGVEPD---LT  264 (432)
T ss_pred             HHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCC--cccc---cccCcCcc---hh
Confidence            9998654444 44444455533334556779999999999999999999987776531  0011   11111122   34


Q ss_pred             cCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc---cCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238          301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA---RPMYSNPPVHGARIVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l  377 (467)
                      .|.|..| .|+.+|.+   .+..++++.            +....   ...+.+.+.++..+....|..  +.+     -
T Consensus       265 tlGKiIG-GGlP~ga~---gGr~eiM~~------------~~p~g~vyqaGT~sgnplamaAG~atl~~--l~~-----~  321 (432)
T COG0001         265 TLGKIIG-GGLPIGAF---GGRAEIMEQ------------LAPLGPVYQAGTLSGNPLAMAAGLATLEE--LMT-----E  321 (432)
T ss_pred             hhhhhhc-CCcceeee---ccHHHHHhh------------hCCCCCccccCCCCCcHHHHHHHHHHHHH--HHh-----c
Confidence            5789999 99999999   477777775            33221   112233444444444443321  110     0


Q ss_pred             HHHHHHHHHHH----HHHHHHhhhccCCCCCcccccCCcceE-Eec-C--C---------C----HHHHHHHHHcccEEE
Q 012238          378 EMMAGRIKNVR----QKLFDSLSAKDKSGKDWSFILRQIGMF-SFT-G--L---------N----KAQSDNMTNKWHVYM  436 (467)
Q Consensus       378 ~~~~~~~~~~r----~~l~~~l~~~~g~~~~~~~~~~~~g~f-~~~-~--l---------~----~~~~~~ll~~~gI~v  436 (467)
                      +...+++.+.-    +-+.+.+. +.|++  +.+ ...+++| ++. .  .         +    ..++..|+++ ||++
T Consensus       322 ~~~y~~l~~~~~~L~~gl~~~~~-~~g~~--~~v-~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~-GV~l  396 (432)
T COG0001         322 EGVYERLDALGERLAEGLRAAAE-RHGIP--LTV-NRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNR-GVYL  396 (432)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHH-HhCCC--eEE-eeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhC-Cccc
Confidence            01233333333    44444444 56653  232 3345555 332 2  1         1    1345577765 9999


Q ss_pred             eCCC----eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          437 TKDG----RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       437 ~~gg----Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .|+.    -+|.+. ++++|++.++++.++++++
T Consensus       397 ~ps~~ea~flS~ah-te~di~~~~~a~~~~~~~~  429 (432)
T COG0001         397 APSQFEAGFLSTAH-TEEDIDRTLEAADEAFKEL  429 (432)
T ss_pred             CCccccceeeeccc-CHHHHHHHHHHHHHHHHHh
Confidence            9984    677777 8999999999999998765

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.63  E-value=7.6e-13  Score=132.95  Aligned_cols=337  Identities=11%  Similarity=0.015  Sum_probs=192.1

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.|||..|..-+.-|.-  .|.|.+++.+.+.... ..+.  ....+....+++++....+    .+++++  +++|+
T Consensus        35 G~~~lD~~sg~~~~~lGh~--~p~v~~a~~~q~~~~~-~~~~--~~~~~~~~~la~~l~~~~~----~~~v~f--~~SGs  103 (395)
T PRK03715         35 GKRYLDFIQGWAVNCLGHC--NPGMVEALAAQAEKLI-NPSP--AFYNEPMAKLAGLLTQHSC----FDKVFF--ANSGA  103 (395)
T ss_pred             CCEEEECCcChhhccCCCC--CHHHHHHHHHHHHhcc-cccc--cccCHHHHHHHHHHhhccC----CCEEEE--eCCcH
Confidence            4588999877542223433  5778888887765422 2221  1234566778888765321    357888  99999


Q ss_pred             hHHHHHHHHHHHhC----CC-CEEEEcCCCCcchHH-HHhhCCCCeE---EeeeecCC--CCCCChhhHHHHHHcCCCCc
Q 012238          162 GSLRLAAALIERYF----PG-AKVLISSPTWGNHKN-IFNDARVPWS---EYRYYDPK--TVGLDFEGMIADIKAAPGGS  230 (467)
Q Consensus       162 ~al~l~~~~l~~~~----~g-d~Vlv~~P~y~~~~~-~~~~~G~~~~---~v~~~~~~--~~~~d~~~l~~~l~~~~~~~  230 (467)
                      +|.+.+..+.....    +| .+|+....+|..... .+...|....   ..|.....  ....|++.+++.+.   +++
T Consensus       104 eA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~  180 (395)
T PRK03715        104 EANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLIT---DKT  180 (395)
T ss_pred             HHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcC---CCc
Confidence            99999866554331    23 578888988876533 3333332211   11110000  01247888888886   456


Q ss_pred             EEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC
Q 012238          231 FILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (467)
Q Consensus       231 ~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (467)
                      .++++...++..|... +.+.+++|.++|++||+++|+||++.++.-.+   ..+.... ..-.+++   .+++|.++ .
T Consensus       181 aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG---~~~a~~~-~gv~PDi---~t~gK~lg-~  252 (395)
T PRK03715        181 VAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTG---TLFAYEL-SGIEPDI---MTLGKGIG-G  252 (395)
T ss_pred             eEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCc---chhhHhh-cCCCCce---eeehhhhh-C
Confidence            6777776666667764 68889999999999999999999998864321   1111111 1222332   46789998 6


Q ss_pred             CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012238          310 AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ  389 (467)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~  389 (467)
                      |+.+|.++   ..+++...            ........+ +.++++..++...|+.  +    ++  +...++.+++-+
T Consensus       253 G~p~~av~---~~~~i~~~------------~~~~~~~T~-~g~pl~~aaala~L~~--l----~~--~~l~~~~~~~g~  308 (395)
T PRK03715        253 GVPLAALL---AKAEVAVF------------EAGDQGGTY-NGNPLMTAVGVAVISQ--L----LA--PGFLEGVRARGE  308 (395)
T ss_pred             CcceEEEE---Eccccccc------------cCCCcCCCC-CCCHHHHHHHHHHHHH--H----Hh--ccHHHHHHHHHH
Confidence            88889885   55554321            111111222 3344554555444421  1    10  134455555556


Q ss_pred             HHHHHhhhccCCCCCcccccCCcceEEecCC--C-HHHHHHHHHcc---cEEEeCCC----eEEec-cCChhhHHHHHHH
Q 012238          390 KLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--N-KAQSDNMTNKW---HVYMTKDG----RISLA-GLSLAKCEYLADA  458 (467)
Q Consensus       390 ~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~-~~~~~~ll~~~---gI~v~~gg----Ris~~-~~~~~~i~~~~~~  458 (467)
                      ++.+.|+ ++.....+......| ..+-+.+  + ...+.+.+.+.   ||++.+.+    ||+.. .++++++++++++
T Consensus       309 ~l~~~L~-~l~~~~~i~~vrG~G-lm~~i~l~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~lR~~p~l~~t~~ei~~~~~~  386 (395)
T PRK03715        309 YLKEKLL-ELSEERGLEGERGEG-LLRALLLGKDIGPQIVEKARDMQPDGLLLNAPRPNLLRFMPALNVTTEEIDQMIAM  386 (395)
T ss_pred             HHHHHHH-HHhhcCCcCeEEcce-eEEEEEecCchHHHHHHHHHhccCCCEEEeecCCCEEEEeCCcccCHHHHHHHHHH
Confidence            6666665 431100122223333 3322222  1 22333333334   99986543    77754 3488999999999


Q ss_pred             HHHHHHhc
Q 012238          459 IIDSYHNV  466 (467)
Q Consensus       459 l~~~l~~~  466 (467)
                      |.++++++
T Consensus       387 l~~~l~~~  394 (395)
T PRK03715        387 LRSVLDKL  394 (395)
T ss_pred             HHHHHHhh
Confidence            99999865

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.62  E-value=2.6e-13  Score=133.95  Aligned_cols=312  Identities=15%  Similarity=0.045  Sum_probs=187.0

Q ss_pred             hHHHHHHHHHHHhc---CCCCcCCCC-------cchHHHHHHHHHHHhCCCCcccccCceeeeecCC-chhHHHHHHHHH
Q 012238          103 LDVVKKAENLMLER---GENKEYLPI-------EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS-GTGSLRLAAALI  171 (467)
Q Consensus       103 ~~~v~~a~~~~~~~---~~~~~Y~~~-------~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g-gt~al~l~~~~l  171 (467)
                      |..|.+++.+.+..   .....|...       .-..+.|+.+++++....     ..+|++  +.| ||++++.+  +.
T Consensus         4 p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~-----~~~v~~--~~gsgT~a~ea~--~~   74 (349)
T TIGR01364         4 PEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPD-----NYEVLF--LQGGATGQFAAV--PL   74 (349)
T ss_pred             CHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCC-----CceEEE--EcCCchHHHHHH--HH
Confidence            66777887777642   111112111       224555666777654311     346766  655 99999998  55


Q ss_pred             HHhCCCCEEEEcCCCCc--chHHHHhhCCCCeEEeeeecC--CCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q 012238          172 ERYFPGAKVLISSPTWG--NHKNIFNDARVPWSEYRYYDP--KTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPT  247 (467)
Q Consensus       172 ~~~~~gd~Vlv~~P~y~--~~~~~~~~~G~~~~~v~~~~~--~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~  247 (467)
                      ..+.+||+|++..-+..  .+.++++..|. +..+...+.  ....+|++.++.  +   ++.+++.+++..|.||+..+
T Consensus        75 nl~~~~~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~v~~th~ETstGv~~~  148 (349)
T TIGR01364        75 NLLAEGKVADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWEI--S---EDAAYVHYCANETIHGVEFR  148 (349)
T ss_pred             hcCCCCCeEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcCC--C---CCCCEEEEcCCCCcccEecc
Confidence            55668999888876664  45678889998 777765321  233466665542  2   46778888999999999775


Q ss_pred             HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHh
Q 012238          248 PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAA  327 (467)
Q Consensus       248 ~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~  327 (467)
                              ++++.+++++++|.+ +.+.....+.+        +. +  +++.|..|.+|+||  +|.++   .+++.++
T Consensus       149 --------~l~~~~~~l~iVDav-ss~g~~~id~~--------~~-d--~~~~ssqK~lgP~G--lg~l~---~s~~~~~  203 (349)
T TIGR01364       149 --------ELPDVKNAPLVADMS-SNILSRPIDVS--------KF-G--LIYAGAQKNIGPAG--LTVVI---VRKDLLG  203 (349)
T ss_pred             --------eecccCCCeEEEEcc-ccccCccCCHH--------Hc-c--EEEEecccccCCCc--eEEEE---ECHHHHh
Confidence                    446668999999999 55554322211        11 2  77888889999888  47775   5566665


Q ss_pred             hhhhhhHHHHHHHHHh-h-ccCccCCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccC-CCC
Q 012238          328 RCCEVAVIQVKSQLKR-L-ARPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLFDSLSAKDK-SGK  403 (467)
Q Consensus       328 ~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~l~~~~~~~~~~r~~l~~~l~~~~g-~~~  403 (467)
                      + .++....+.+ ... . .......++.....++..+|+.  +   -+. .++++.++.++..+++++.|+ +++ +-.
T Consensus       204 ~-~~~~~~~~~~-~~~~~~~~~~~~Tp~~~~i~al~~al~~--l---~~~gG~e~i~~r~~~l~~~l~~~l~-~~~gl~~  275 (349)
T TIGR01364       204 R-ASRITPSMLN-YKIHAENDSMYNTPPTFAIYVSGLVFKW--L---KEQGGVKAIEKRNQAKAQLLYDTID-NSNGFYR  275 (349)
T ss_pred             h-cccCCCCcch-HHHHHhcCCCCCCCcHHHHHHHHHHHHH--H---HHcCCHHHHHHHHHHHHHHHHHHHH-hCCCeec
Confidence            4 1111111111 111 1 0111234444444444444421  1   123 378899999999999999999 874 311


Q ss_pred             CcccccC--Cc-ceEEec--CC--CHHHHHHHHHcccEEEeCC----C--eEEeccC-ChhhHHHHHHHHHHHHHh
Q 012238          404 DWSFILR--QI-GMFSFT--GL--NKAQSDNMTNKWHVYMTKD----G--RISLAGL-SLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       404 ~~~~~~~--~~-g~f~~~--~l--~~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~~~i~~~~~~l~~~l~~  465 (467)
                        ....+  .. ....+.  +.  +.++.. .+.+.|+++.++    |  |+|+... +.+++++++++|++++++
T Consensus       276 --~~~~~~~rs~~v~sf~~~~~~~~~~~~~-~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~~  348 (349)
T TIGR01364       276 --NPVDPRNRSRMNVVFTLGNEELEKRFLK-EAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQKK  348 (349)
T ss_pred             --cCCCHHHcCCeEEEEecCChhHhHHHHH-HHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence              10111  12 222222  22  233334 444569977666    3  9997654 679999999999998765

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=99.62  E-value=9.1e-15  Score=136.96  Aligned_cols=286  Identities=11%  Similarity=0.090  Sum_probs=163.5

Q ss_pred             hHHHHHHHHHHHhCCCCccccc-CceeeeecCCchhHHHHHHHHHHHh--C--CCCEEEEcCCCCcchHHHHhhCCCCeE
Q 012238          128 LAAFNKVTAELLFGADNSVLKE-QRVATVQGLSGTGSLRLAAALIERY--F--PGAKVLISSPTWGNHKNIFNDARVPWS  202 (467)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~ggt~al~l~~~~l~~~--~--~gd~Vlv~~P~y~~~~~~~~~~G~~~~  202 (467)
                      .++|.+.|.++ ++.-|..+.. ..|++  ..|+|+.++.+.-.|+..  .  +--+|+...|+|+.|......+.-...
T Consensus        45 s~eL~~~Ir~L-H~~VGNAvt~gr~IV~--GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y  121 (363)
T PF04864_consen   45 SPELERQIRRL-HRVVGNAVTDGRYIVF--GTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLY  121 (363)
T ss_dssp             -HHHHHHHHHH-HHHH-SB--TTSEEEE--ECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTE
T ss_pred             cHHHHHHHHHH-HHHhccccccCcEEEE--cCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCc
Confidence            57888888877 5444444444 46777  899999988873333222  1  224899999999999988776544333


Q ss_pred             EeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCC
Q 012238          203 EYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDND  282 (467)
Q Consensus       203 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~  282 (467)
                      ...-+ ...+.          ......+.+=++++||||.|.+-     +.+   ++..+..+|.|-+|.+-.|..+.  
T Consensus       122 ~w~Gd-a~~~~----------~~~~~~~~IElVTSPNNPDG~lr-----~~V---~~g~~~k~I~D~AYYWPhyTpI~--  180 (363)
T PF04864_consen  122 KWAGD-ASNFK----------NSDNPSPYIELVTSPNNPDGQLR-----EAV---LNGSSGKVIHDLAYYWPHYTPIT--  180 (363)
T ss_dssp             EEEEE-CCCGT----------T-S-CCGEEEEEESS-TTT-----------S---STTTEEEEEEE-TT-STTTS-----
T ss_pred             ccccc-HHhhc----------cCCCCCCeEEEEeCCCCCccccc-----chh---cCCCCcceeeeeeeecccccccC--
Confidence            33221 22221          11124677888999999999742     223   34456678999999988775321  


Q ss_pred             hhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHH
Q 012238          283 ASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVAN  362 (467)
Q Consensus       283 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  362 (467)
                              ...++.|.+.++||.-|-+|-|+||.+  ..++++.++            |..+....+.+++.-+|.-++.
T Consensus       181 --------~~aD~DiMLFT~SK~TGHAGSR~GWAl--VKD~~Va~k------------M~~y~~lnTiGvS~dsQLRa~k  238 (363)
T PF04864_consen  181 --------APADHDIMLFTLSKLTGHAGSRFGWAL--VKDEEVAKK------------MTKYMELNTIGVSRDSQLRALK  238 (363)
T ss_dssp             --------S-B--SEEEEEHHHHCS-GGG-EEEEE--ES-HHHHHH------------HHHHHHHHCSS--HHHHHHHHH
T ss_pred             --------CCCCCceEEEEEecccCccccccceee--ecCHHHHHH------------HHHHHHHhcccCcHHHHHHHHH
Confidence                    233577899999999999999999997  589988887            6666666677888888876666


Q ss_pred             HhCC----hhhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC----CC---cccccCCcceEEecCCCH---HH
Q 012238          363 VVGN----PALF----DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG----KD---WSFILRQIGMFSFTGLNK---AQ  424 (467)
Q Consensus       363 ~L~~----~~~~----~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~----~~---~~~~~~~~g~f~~~~l~~---~~  424 (467)
                      +|.-    .+..    +.++-..+.+++|+++.++.+...=  ...+|    .-   +.-......-|.|++...   +.
T Consensus       239 iLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~--rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed~D  316 (363)
T PF04864_consen  239 ILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASK--RFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREEDED  316 (363)
T ss_dssp             HHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSS--SEEE---SCEEETTTTCEEE---SEEEEEESSCGGSS
T ss_pred             HHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcC--ceecCcCCchhccccccccCCCCCeEEEecCCccccc
Confidence            6541    0000    1122223455555555444433210  01110    00   111111233488886532   45


Q ss_pred             HHHHHHcccEEEeCC---C------eEEeccCChhhHHHHHHHHHHH
Q 012238          425 SDNMTNKWHVYMTKD---G------RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       425 ~~~ll~~~gI~v~~g---g------Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                      |...|+++||..+.|   |      |||+-. ++++++.++++|...
T Consensus       317 C~~~l~~~~I~tr~G~~fga~~ryVRlSml~-~~d~Fd~l~~rL~~l  362 (363)
T PF04864_consen  317 CYAVLREAKIITRSGVLFGADSRYVRLSMLK-RDDDFDQLLERLSKL  362 (363)
T ss_dssp             HHHHHHCTTEEEEEGGGGTS-TTEEEEESSS--HHHHHHHHHHHHCC
T ss_pred             HHHHHHhCCcccCCCCccCCCCCeEEEeccC-CHHHHHHHHHHHHhh
Confidence            888999999999998   3      999987 889999999998754

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.62  E-value=1e-12  Score=128.92  Aligned_cols=278  Identities=18%  Similarity=0.152  Sum_probs=178.6

Q ss_pred             CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCCC
Q 012238          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARVP  200 (467)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~~  200 (467)
                      .+....|.++++++-.+        +..+.  +++|+.|+..+  ++..+.+||+|+++...|.....    +++..|++
T Consensus        62 nPT~~~lE~~~a~LEg~--------~~~~a--fsSGmaAI~~~--~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~  129 (396)
T COG0626          62 NPTRDALEEALAELEGG--------EDAFA--FSSGMAAISTA--LLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVE  129 (396)
T ss_pred             CccHHHHHHHHHHhhCC--------CcEEE--ecCcHHHHHHH--HHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeE
Confidence            45567888999998432        34555  79999999997  67778899999999998876544    44567887


Q ss_pred             eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012238          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (467)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~  280 (467)
                      +.+++.       -|.+.+++++.+  +++++|++-+|.|||-.+.+.   .+|+++++++|+++|+|+.|....+-   
T Consensus       130 ~~~~d~-------~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~DI---~~i~~~A~~~g~~vvVDNTfatP~~q---  194 (396)
T COG0626         130 VTFVDP-------GDDEALEAAIKE--PNTKLVFLETPSNPLLEVPDI---PAIARLAKAYGALVVVDNTFATPVLQ---  194 (396)
T ss_pred             EEEECC-------CChHHHHHHhcc--cCceEEEEeCCCCcccccccH---HHHHHHHHhcCCEEEEECCccccccc---
Confidence            777654       245566666653  589999999999999887665   47777799999999999998765542   


Q ss_pred             CChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhcc-CccCCCchHHHHH
Q 012238          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLAR-PMYSNPPVHGARI  359 (467)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~  359 (467)
                       .+  +    +. .-.|++.|.+|.++-.+-=+|.++ ++.++++.+.            +..... .+....+......
T Consensus       195 -~P--L----~~-GaDIVvhSaTKyl~GHsDvl~G~v-~~~~~~~~~~------------~~~~~~~~~G~~l~p~dA~l  253 (396)
T COG0626         195 -RP--L----EL-GADIVVHSATKYLGGHSDVLGGVV-LTPNEELYEL------------LFFAQRANTGAVLSPFDAWL  253 (396)
T ss_pred             -Ch--h----hc-CCCEEEEeccccccCCcceeeeEE-ecChHHHHHH------------HHHHHHhhcCCCCCHHHHHH
Confidence             11  1    12 246889999999986666566643 3455555554            322222 2333455555444


Q ss_pred             HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccc-----------------CCcceEEecCCCH
Q 012238          360 VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL-----------------RQIGMFSFTGLNK  422 (467)
Q Consensus       360 ~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~-----------------~~~g~f~~~~l~~  422 (467)
                      +..-|+.          +..+.++..++...+.+.|+ +.+.  --+++.                 ..||+|.|.=-+.
T Consensus       254 ~lRGlkT----------L~~Rm~~~~~nA~~IA~~L~-~~p~--V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~  320 (396)
T COG0626         254 LLRGLRT----------LALRMERHNENALKIAEFLA-DHPK--VKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE  320 (396)
T ss_pred             HHhccch----------HHHHHHHHHHHHHHHHHHHh-cCCC--eEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCCh
Confidence            4333322          44455556666777777776 4321  011211                 2567776541121


Q ss_pred             HHHHHHHHcccEEE---eCC-------------------------C------eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          423 AQSDNMTNKWHVYM---TKD-------------------------G------RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       423 ~~~~~ll~~~gI~v---~~g-------------------------g------Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +.+.++++.-.++.   .-|                         |      |+|++-   |+++.+++-|+++++.+
T Consensus       321 ~~~~~f~~~L~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGl---Ed~eDLi~Dl~~Al~~~  395 (396)
T COG0626         321 EAAKKFLDSLKLFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGL---EDVEDLIADLEQALAKA  395 (396)
T ss_pred             HHHHHHHHhCCccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHHHHhh
Confidence            55555555433322   222                         1      999997   67777777888777654

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.62  E-value=5.2e-13  Score=135.02  Aligned_cols=157  Identities=18%  Similarity=0.121  Sum_probs=116.0

Q ss_pred             cchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH----HHHhhCCCCe
Q 012238          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK----NIFNDARVPW  201 (467)
Q Consensus       126 ~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~----~~~~~~G~~~  201 (467)
                      +-..+|++.++++...       ...++   +.+|+.|+.++  ++..+.+||+|+++...|....    ..++..|+++
T Consensus        69 pt~~~le~~la~l~g~-------~~~v~---fsSG~~Ai~~a--l~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v  136 (437)
T PRK05613         69 PTVEALENRIASLEGG-------VHAVA---FASGQAAETAA--ILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEV  136 (437)
T ss_pred             hHHHHHHHHHHHHhCC-------CeEEE---eCCHHHHHHHH--HHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEE
Confidence            3467888999998643       23444   47777888876  5555789999999999998663    4557789998


Q ss_pred             EEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012238          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (467)
Q Consensus       202 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~  281 (467)
                      +.++.  +    .|++.+++.++   ++++++++.++.||+|.+.+.+   +|+++|+++|+++|+|.++.....    .
T Consensus       137 ~~vd~--~----~d~e~l~~~l~---~~tk~V~~e~~~Np~~~v~di~---~I~~la~~~gi~livD~t~a~g~~----~  200 (437)
T PRK05613        137 TFVEN--P----DDPESWQAAVQ---PNTKAFFGETFANPQADVLDIP---AVAEVAHRNQVPLIVDNTIATAAL----V  200 (437)
T ss_pred             EEECC--C----CCHHHHHHhCC---ccCeEEEEECCCCCCCcccCHH---HHHHHHHHcCCeEEEECCCccccc----c
Confidence            88862  2    27899999887   5677888889999999888765   666779999999999999533211    1


Q ss_pred             ChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                      .  +.    +.+ -.+++.|++|.++..|.-+|.++
T Consensus       201 ~--p~----~~G-aDivv~S~~K~l~G~gd~~gG~v  229 (437)
T PRK05613        201 R--PL----ELG-ADVVVASLTKFYTGNGSGLGGVL  229 (437)
T ss_pred             C--hH----HhC-CCEEEeeccceecCCCcceeEEE
Confidence            1  11    122 36889999999987777777775

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.61  E-value=1.4e-12  Score=133.25  Aligned_cols=338  Identities=15%  Similarity=0.112  Sum_probs=189.1

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.||+..|.....-|.  -.|.|.+++.+.++......+ +.    +....+|+.+..... .  -+.+.+  +++|+
T Consensus        98 G~~yiD~~~g~g~~~lGh--~~p~v~~av~~ql~~~~~~~~-~~----~~~~~lAe~l~~~~p-~--~~~v~f--~~SGs  165 (474)
T PLN02482         98 GNEYIDYVGSWGPAIIGH--ADDEVLAALAETMKKGTSFGA-PC----LLENVLAEMVIDAVP-S--VEMVRF--VNSGT  165 (474)
T ss_pred             CCEEEEecccccccccCC--CCHHHHHHHHHHHhhCCCCCC-CC----HHHHHHHHHHHHhCC-C--CCEEEE--eCChH
Confidence            357889877753122232  367888888888865432222 33    233344555433221 1  358888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-h--CCCC------eEEeeeec-CCC---CCCChhhHHHHHHcCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-D--ARVP------WSEYRYYD-PKT---VGLDFEGMIADIKAAPG  228 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~-~--~G~~------~~~v~~~~-~~~---~~~d~~~l~~~l~~~~~  228 (467)
                      +|...+.++........+|+...-+|.++...+- .  .|..      ...+|... +..   .-.|++.+++.+++.+.
T Consensus       166 EA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~~  245 (474)
T PLN02482        166 EACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEANKG  245 (474)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhCCC
Confidence            9999986665444444689988888877543211 0  0000      00000000 000   00278899988876545


Q ss_pred             CcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          229 GSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~~~-~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      ...++++-....-.|.+.+ .+.|++|.++|++||+++|+||+..++..+.    .... ....-.+++   .+|+|.+|
T Consensus       246 ~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~----~ga~-~~~gv~PDi---~t~gK~lg  317 (474)
T PLN02482        246 EIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAY----GGAQ-EYFGITPDL---TTLGKVIG  317 (474)
T ss_pred             ceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCc----chHh-HHhCCCCCE---EEecchhh
Confidence            5666666666666676654 6889999999999999999999987774331    1111 112222343   36799998


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc---cCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA---RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  384 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~  384 (467)
                       .|+.+|.+.   +.+++++.            +....   ...+.+.+.++..++...|+.  +    ++  +...+++
T Consensus       318 -gG~Pigav~---g~~ei~~~------------~~~~~~~~~~~T~~gnpl~~aAala~L~~--l----~~--~~~~~~~  373 (474)
T PLN02482        318 -GGLPVGAYG---GRREIMEM------------VAPAGPMYQAGTLSGNPLAMTAGIHTLKR--L----QQ--PGTYEYL  373 (474)
T ss_pred             -CCCceEEEE---EcHHHHHh------------hccCCCcccccCcchhHHHHHHHHHHHHH--H----hc--cCHHHHH
Confidence             889999994   77887776            43111   111222344444444444321  0    00  1233334


Q ss_pred             HHHHHHHHHHhhhccCCCCCcccc-cCCcceE-Eec--C-C---------CH----HHHHHHHHcccEEEeCCC----eE
Q 012238          385 KNVRQKLFDSLSAKDKSGKDWSFI-LRQIGMF-SFT--G-L---------NK----AQSDNMTNKWHVYMTKDG----RI  442 (467)
Q Consensus       385 ~~~r~~l~~~l~~~~g~~~~~~~~-~~~~g~f-~~~--~-l---------~~----~~~~~ll~~~gI~v~~gg----Ri  442 (467)
                      .++-++|.+.|+ ++.....+... ...++++ +.+  + .         +.    .+.+.+++ +||++.+.+    .+
T Consensus       374 ~~~g~~l~~~L~-~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~-~Gv~~~~~~~~~~~p  451 (474)
T PLN02482        374 DKITKKLIQGIL-EAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLE-EGVYLAPSQFEAGFT  451 (474)
T ss_pred             HHHHHHHHHHHH-HHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHH-CCeEEeccCCCCCcC
Confidence            444444444444 32110001222 2223444 111  1 0         11    23455555 699998864    25


Q ss_pred             EeccCChhhHHHHHHHHHHHHHhc
Q 012238          443 SLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       443 s~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ++.. ++++++++++++.++++++
T Consensus       452 sl~h-t~~dId~~l~al~~~l~~~  474 (474)
T PLN02482        452 SLAH-TEEDIDFTIAAAERVLARI  474 (474)
T ss_pred             CCCC-CHHHHHHHHHHHHHHHHhC
Confidence            5555 8999999999999998764

>PRK04311 selenocysteine synthase; Provisional

Probab=99.61  E-value=8.6e-13  Score=133.92  Aligned_cols=342  Identities=16%  Similarity=0.089  Sum_probs=197.9

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCC-----cchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI-----EGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~-----~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      .+||.+--.++++.+.++.++.+.+++.+.+.......|.-.     .-+..+++.++++.+.        +..++  ++
T Consensus        80 ~vinatg~v~~tNlg~s~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Ga--------e~a~v--v~  149 (464)
T PRK04311         80 PVINATGVVLHTNLGRALLSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGA--------EDALV--VN  149 (464)
T ss_pred             ceecCCccEEeccCCCCCCCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCC--------CeEEE--EC
Confidence            688877555666667677789999999888754322233211     1246888999998643        24555  78


Q ss_pred             CchhHHHHHHHHHHHhCCCCEEEEcCCCCcc------hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEE
Q 012238          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGN------HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~------~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~  232 (467)
                      +++.|+.++   +..+.+||+|+++...+..      +...++..|+++++++..    ...++++++++++   +++++
T Consensus       150 sgtaAl~l~---l~~l~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~----~~t~~~dle~aI~---~~Tkl  219 (464)
T PRK04311        150 NNAAAVLLA---LNALAAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT----NRTHLRDYEQAIN---ENTAL  219 (464)
T ss_pred             CHHHHHHHH---HHHhCCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC----CCCCHHHHHHhcC---ccCeE
Confidence            899999886   4557899999999764331      234567889999998763    2357889999887   57889


Q ss_pred             EEeCCCCCCC--CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCC----CCCCCCChhHHHHHHhcCCeEEEEecCccCc
Q 012238          233 LLHGCAHNPT--GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA----SGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (467)
Q Consensus       233 i~i~~p~NPT--G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (467)
                      +++.++.||+  |... ..++++|+++|++||+++|+|.....+.    ++-.  ..+.+....+. .-.++++|.+|.+
T Consensus       220 V~~vh~sN~~i~G~~~-~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~--~~p~~~~~l~~-GaDiv~fSg~K~L  295 (464)
T PRK04311        220 LLKVHTSNYRIEGFTK-EVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLP--DEPTVQELLAA-GVDLVTFSGDKLL  295 (464)
T ss_pred             EEEEcCCCccccccCC-cCCHHHHHHHHHHcCCeEEEECCCcccccchhccCC--CCCchhhHHhc-CCcEEEecCcccc
Confidence            9999999994  4321 2346788888999999999999632221    1100  01112122223 2458899999998


Q ss_pred             ccCCCccceEEEecCCHHHHhhhhhhhHHHHHH-HHHhhccCccCCCchHHHHHHHHHhCChhhHHH--HHHHHHHHHHH
Q 012238          307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKS-QLKRLARPMYSNPPVHGARIVANVVGNPALFDE--WKAEMEMMAGR  383 (467)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~--~~~~l~~~~~~  383 (467)
                      |-|  ..|+++   +.+++++.        ++. .+.+..+..-.....+. ......++.......  -.+-+....++
T Consensus       296 gGp--~~G~i~---g~~~li~~--------l~~~~~~r~lr~dk~~l~~l~-~~l~~~~~~~~~~~~i~~l~~l~~~~~~  361 (464)
T PRK04311        296 GGP--QAGIIV---GKKELIAR--------LKKHPLKRALRVDKLTLAALE-ATLRLYLDPEKLAEEIPTLRLLTRSPEE  361 (464)
T ss_pred             cCC--ceEEEE---EcHHHHHH--------HhhchhHHHHhcchHHHHHHH-HHHHHHhChhhhhhhCcHHHHhcCCHHH
Confidence            745  368774   67777776        221 11111111011111111 111112211100000  00113333455


Q ss_pred             HHHHHHHHHHHhhhccCCCC-CcccccC----Ccc------e---EEec---CCCHHHHHHHHHccc--EEEeCC-C--e
Q 012238          384 IKNVRQKLFDSLSAKDKSGK-DWSFILR----QIG------M---FSFT---GLNKAQSDNMTNKWH--VYMTKD-G--R  441 (467)
Q Consensus       384 ~~~~r~~l~~~l~~~~g~~~-~~~~~~~----~~g------~---f~~~---~l~~~~~~~ll~~~g--I~v~~g-g--R  441 (467)
                      +.++.+.+.+.|+ ....++ ...+...    .||      +   -+-+   +++.+.+.+.|++..  |+.+-. |  .
T Consensus       362 ~~~~A~~la~~L~-~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~~~~~~l~~~lr~~~~~i~~r~~~~~~~  440 (464)
T PRK04311        362 LRARAERLAAALK-AALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKDRSLEALAARLRLLPPPVIGRIEDGRLL  440 (464)
T ss_pred             HHHHHHHHHHHHH-hccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCEEE
Confidence            6666777777776 432111 0122211    111      1   1111   235566666666633  444322 3  4


Q ss_pred             EEeccCChhhHHHHHHHHHHHHH
Q 012238          442 ISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       442 is~~~~~~~~i~~~~~~l~~~l~  464 (467)
                      |.+.++.+++++.++++|++++.
T Consensus       441 ld~r~~~~~~~~~~~~~~~~~~~  463 (464)
T PRK04311        441 LDLRTLEEEDEERLAAALLEALN  463 (464)
T ss_pred             EEeCcCCHHHHHHHHHHHHHHhh
Confidence            55667788999999999998864

>PRK06541 hypothetical protein; Provisional

Probab=99.61  E-value=1.1e-12  Score=134.11  Aligned_cols=340  Identities=12%  Similarity=0.070  Sum_probs=192.6

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC---CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~---~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      +.+.||+..|..-..-|.  -.|.|.+++.+.+....   ...| ......++-+.+++....      .-+++.+  ++
T Consensus        51 G~~ylD~~~g~~~~~lGh--~~p~v~~Av~~q~~~~~~~~~~~~-~~~~~~~la~~l~~~~p~------~~~~v~f--~~  119 (460)
T PRK06541         51 GKRYLDGLAGLFVVQVGH--GRAELAEAAAKQAGTLAFFPLWSY-AHPPAIELAERLAALAPG------DLNRVFF--TT  119 (460)
T ss_pred             CCEEEECCccHHhccCCC--CCHHHHHHHHHHHhhCcCcccccc-CCHHHHHHHHHHHHhCCC------CcCEEEE--cC
Confidence            457899988743122233  36788888888775421   0122 222223344444443211      1258888  99


Q ss_pred             CchhHHHHHHHHHHHhC-----C-CCEEEEcCCCCcchHHHHh-hCCC------------CeEEeeeecCCC---CCCC-
Q 012238          159 SGTGSLRLAAALIERYF-----P-GAKVLISSPTWGNHKNIFN-DARV------------PWSEYRYYDPKT---VGLD-  215 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~-----~-gd~Vlv~~P~y~~~~~~~~-~~G~------------~~~~v~~~~~~~---~~~d-  215 (467)
                      +|++|.+.+.++.....     + ..+|+...-+|.+...... ..|.            .+..+|..+...   ++.+ 
T Consensus       120 sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  199 (460)
T PRK06541        120 GGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDP  199 (460)
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCH
Confidence            99999999866544431     1 3578888888865543221 1111            122222210000   1122 


Q ss_pred             -------hhhHHHHHHcC-CCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012238          216 -------FEGMIADIKAA-PGGSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (467)
Q Consensus       216 -------~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~~~~-~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~  286 (467)
                             ++.+++.++.. +....++++...++++|.+.+ .+.+++|.++|++||+++|+||++.+|.-.+   ..+..
T Consensus       200 ~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G---~~~a~  276 (460)
T PRK06541        200 EAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLG---EMFGC  276 (460)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---hhhhh
Confidence                   25677777642 234455555555899999865 8889999999999999999999998874211   11111


Q ss_pred             HHHHhcCCeEEEEecCccCcccCCC-ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc----cCccCCCchHHHHHHH
Q 012238          287 RLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA----RPMYSNPPVHGARIVA  361 (467)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~  361 (467)
                      .. ..-.++++   .|+|.++ .|+ ++|+++   .++++++.            +....    ...+.+.+.++..++.
T Consensus       277 ~~-~gv~PDiv---t~gK~l~-~G~~pigav~---~~~~i~~~------------~~~~~~~~~~~~T~~gnp~~~aaal  336 (460)
T PRK06541        277 ER-FGYVPDII---TCAKGIT-SGYSPLGAMI---ASDRLFEP------------FLDGPTMFLHGYTFGGHPVSAAVAL  336 (460)
T ss_pred             hh-cCCCCCEE---Eeccccc-CCccceeEEE---EcHHHHHH------------hhcCCCccccCCCCCCCHHHHHHHH
Confidence            11 12123433   4899999 887 999995   67777665            32211    1112234445545554


Q ss_pred             HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceEEec--C-------CCH---------
Q 012238          362 NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFT--G-------LNK---------  422 (467)
Q Consensus       362 ~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~~~--~-------l~~---------  422 (467)
                      ..|+.  +    +  -+...++++++.++|.+.|+ ++. .|. +..+...|.++.+-  .       ++.         
T Consensus       337 a~l~~--l----~--~~~~~~~~~~~g~~l~~~L~-~l~~~~~-v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~  406 (460)
T PRK06541        337 ANLDI--F----E--REGLLDHVRDNEPAFRATLE-KLLDLPI-VGDVRGDGYFYGIELVKDKATKETFTDDESERLLRG  406 (460)
T ss_pred             HHHHH--H----H--hccHHHHHHHHHHHHHHHHH-HhhcCCC-eEEEEecceEEEEEEecCcccccCCcchhhhhhHHH
Confidence            44321  1    1  11345677777888888887 552 110 12234455544221  1       000         


Q ss_pred             HHHHHHHHcccEEEeCC--C----eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          423 AQSDNMTNKWHVYMTKD--G----RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       423 ~~~~~ll~~~gI~v~~g--g----Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .+...+++ +||++.+.  |    ||+.. .++++++++++++|.++++++
T Consensus       407 ~~~~~l~~-~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~  456 (460)
T PRK06541        407 FLSPALFE-AGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLTEA  456 (460)
T ss_pred             HHHHHHHh-CCeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            12345554 69999763  3    67755 248899999999999998754

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.61  E-value=3.6e-13  Score=133.60  Aligned_cols=318  Identities=13%  Similarity=0.015  Sum_probs=191.4

Q ss_pred             CCCCchHHHHHHHHHHHhcC----C----CCcCCC--CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHH
Q 012238           98 LQPYVLDVVKKAENLMLERG----E----NKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLA  167 (467)
Q Consensus        98 ~~p~~~~~v~~a~~~~~~~~----~----~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~  167 (467)
                      +...+++.|++++...+.+-    .    .....+  ..-..+.++.++++++...     ..++++ .+.+|+++++.+
T Consensus        10 GP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~-----~~~v~~-~~gsgt~~~Ea~   83 (360)
T PRK05355         10 GPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPD-----NYKVLF-LQGGASLQFAMV   83 (360)
T ss_pred             CCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-----CcEEEE-EcCCchHHHHHH
Confidence            33446899999988765210    0    011111  1335677777888765311     234544 168889999987


Q ss_pred             HHHHHHhCCCCEEEEcCCCCc--chHHHHhhCCCCeEEeeeecCCCCCCChhhHHH-HHHcCCCCcEEEEeCCCCCCCCC
Q 012238          168 AALIERYFPGAKVLISSPTWG--NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA-DIKAAPGGSFILLHGCAHNPTGI  244 (467)
Q Consensus       168 ~~~l~~~~~gd~Vlv~~P~y~--~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~-~l~~~~~~~~~i~i~~p~NPTG~  244 (467)
                        +...+.+||++++..-+..  .+.++++.+|.. ..+...+..+ ..+..++++ .++   ++++++.+++..|.||+
T Consensus        84 --~~nl~~~g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g-~~~~~~~~~~~l~---~~~~~V~~th~eTstGv  156 (360)
T PRK05355         84 --PMNLLGGGKKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDG-FTYIPPLDEWQLS---DDAAYVHYTSNETIDGT  156 (360)
T ss_pred             --HHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccC-CCCCCChhhccCC---CCCCEEEEccCCCcceE
Confidence              6667779999888876664  346678888965 5555432122 344444444 565   35678888999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHH
Q 012238          245 DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (467)
Q Consensus       245 ~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~  324 (467)
                      ..+  ++.+|      +|+++|+|.+ +.+.....+.+        +. +  +++.|..|.+|++|+  |.++   .+++
T Consensus       157 ~~~--~i~~i------~g~l~vVDav-ss~g~~~idv~--------~~-d--~~~~ssqK~lgP~Gl--g~l~---~s~~  211 (360)
T PRK05355        157 EFH--ELPDT------GDVPLVADMS-SDILSRPIDVS--------KF-G--LIYAGAQKNIGPAGL--TIVI---VRED  211 (360)
T ss_pred             ecC--ccccc------CCCcEEEEcC-ccccCccCCHH--------Hc-c--EEEEeccccccCCce--EEEE---ECHH
Confidence            984  24444      8999999999 55544322211        11 2  778888899998884  7775   5566


Q ss_pred             HHhhhhh--hhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          325 LAARCCE--VAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       325 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      .+++..+  +.+.++.......  .....++.....++..+|+.-     .+. .++++.++.++..+++++.|+ ++++
T Consensus       212 ~l~~~~~~~~~~~~~~~~~~~~--~~~~Tp~~~~i~aL~~aL~~i-----~~~gG~e~i~~r~~~l~~~l~~~l~-~~~~  283 (360)
T PRK05355        212 LLGRALPSIPSMLDYKTHADND--SMYNTPPTFAIYLAGLVFKWL-----KEQGGVAAMEKRNQEKAALLYDAID-SSDF  283 (360)
T ss_pred             HHhhcccCCChHHHHHHHHhcC--CccCCCcHHHHHHHHHHHHHH-----HHccCHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence            6654111  1233333212111  122344544444444444311     123 377899999999999999999 8874


Q ss_pred             CCCcccccC---Cc-ceEEec--CC-C-HHHHHHHHHcccEEEeCC----C--eEEeccC-ChhhHHHHHHHHHHHHHh
Q 012238          402 GKDWSFILR---QI-GMFSFT--GL-N-KAQSDNMTNKWHVYMTKD----G--RISLAGL-SLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       402 ~~~~~~~~~---~~-g~f~~~--~l-~-~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~~~i~~~~~~l~~~l~~  465 (467)
                         +....+   .. ....+.  +. . .++...+. ++|+.+.++    |  |+|+... +.+++++++++|++++++
T Consensus       284 ---~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~-~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~  358 (360)
T PRK05355        284 ---YRNPVAPEDRSRMNVPFTLADEELDKKFLAEAK-AAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFERR  358 (360)
T ss_pred             ---cccCCChhhcCCcEEEEEcCChHHHHHHHHHHH-HCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence               111111   12 222222  21 2 23334444 469988665    3  9997654 679999999999998764

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.61  E-value=1e-12  Score=120.59  Aligned_cols=314  Identities=14%  Similarity=0.125  Sum_probs=196.8

Q ss_pred             chHHHHHHHHHHHhcCCCCcCCCC---cchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCC
Q 012238          102 VLDVVKKAENLMLERGENKEYLPI---EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA  178 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~---~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd  178 (467)
                      .++.|.+|+..-.     .+|..+   +-..++++-+...+....     +.-.++  ...|+.+.+.+  +...+.|||
T Consensus        28 l~~~V~~A~~~~~-----lgh~sPe~~qIm~~v~egikyVFkT~n-----~~tf~i--sgsGh~g~E~a--l~N~lePgd   93 (385)
T KOG2862|consen   28 LSGRVQEAMSRPS-----LGHMSPEFVQIMDEVLEGIKYVFKTAN-----AQTFVI--SGSGHSGWEAA--LVNLLEPGD   93 (385)
T ss_pred             CCHHHHHhhcCCc-----cccCCHHHHHHHHHHHHHHHHHhccCC-----CceEEE--ecCCcchHHHH--HHhhcCCCC
Confidence            4677777764422     333322   123445555544433332     234555  67888889987  667788999


Q ss_pred             EEEEcC-CCCc-chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012238          179 KVLISS-PTWG-NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (467)
Q Consensus       179 ~Vlv~~-P~y~-~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~  256 (467)
                      +|++.. -.|. .+.++.+.+|+++..++.  +.+....++++.+.+.+  .+.+++++++....||+..+.  ++.+-+
T Consensus        94 ~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~--~~G~~~~le~i~~~lsq--h~p~~vfv~hgdsSTgV~q~~--~~~~g~  167 (385)
T KOG2862|consen   94 NVLVVSTGTWGQRAADCARRYGAEVDVVEA--DIGQAVPLEEITEKLSQ--HKPKAVFVTHGDSSTGVLQDL--LAISGE  167 (385)
T ss_pred             eEEEEEechHHHHHHHHHHhhCceeeEEec--CcccCccHHHHHHHHHh--cCCceEEEEecCccccccchH--HHHHHH
Confidence            988876 4553 567889999999999976  55678999999999997  566788888888999997762  344555


Q ss_pred             HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc-CCCccceEEEecCCHHHHhhhhhhhHH
Q 012238          257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIGAMNVVCSSSDLAARCCEVAVI  335 (467)
Q Consensus       257 ~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~RiG~~~~v~~~~~~~~~~~~~~~~  335 (467)
                      +|++|+.++++|.+ ..+.-.+...|.|        +-++.+.+| -|.++. +|+  +-+   +.++...++       
T Consensus       168 lc~k~~~lllVD~V-aSlggt~F~mDew--------gVDvaytgS-QKaL~aP~GL--sii---sfS~ka~~~-------  225 (385)
T KOG2862|consen  168 LCHKHEALLLVDTV-ASLGGTEFEMDEW--------GVDVAYTGS-QKALGAPAGL--SII---SFSDKALEA-------  225 (385)
T ss_pred             HhhcCCeEEEEech-hhcCCccceehhh--------cccEEEecc-hhhcCCCCCc--cee---ecCHHHHHH-------
Confidence            69999999999999 4444333334444        335666666 566664 454  334   566665555       


Q ss_pred             HHHHHHH----------hhccC--------ccC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          336 QVKSQLK----------RLARP--------MYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       336 ~~~~~l~----------~~~~~--------~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                       +++.-.          .+...        .|- .+|.........+|     ....++.+++..++.+++.+.+...|+
T Consensus       226 -~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL-----~~I~eeGL~~~~~rH~e~s~~l~~~l~  299 (385)
T KOG2862|consen  226 -IRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAAL-----ALIAEEGLENSWRRHREMSKWLKLSLE  299 (385)
T ss_pred             -HhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             222110          00000        111 23333333333333     223356789999999999999999999


Q ss_pred             hccCCCCCccc----c-cCCcceEEecCCCHHH-HHHHHHcccEEEeCC-----C---eEEecc--CChhhHHHHHHHHH
Q 012238          397 AKDKSGKDWSF----I-LRQIGMFSFTGLNKAQ-SDNMTNKWHVYMTKD-----G---RISLAG--LSLAKCEYLADAII  460 (467)
Q Consensus       397 ~~~g~~~~~~~----~-~~~~g~f~~~~l~~~~-~~~ll~~~gI~v~~g-----g---Ris~~~--~~~~~i~~~~~~l~  460 (467)
                       ++|+.- +..    . +.-.+.-+-.+.++.. +.++..++++.+..|     |   ||.+-+  -+.+.++..++.|+
T Consensus       300 -~~GLq~-fv~~e~~rlptvttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~  377 (385)
T KOG2862|consen  300 -ALGLQL-FVVDEELRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLK  377 (385)
T ss_pred             -HhCccc-eecChhhccCcceeeecCCCCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHH
Confidence             888621 111    0 1112222223557654 777887767776554     2   998532  25588999999999


Q ss_pred             HHHHh
Q 012238          461 DSYHN  465 (467)
Q Consensus       461 ~~l~~  465 (467)
                      .++.+
T Consensus       378 ~alq~  382 (385)
T KOG2862|consen  378 LALQR  382 (385)
T ss_pred             HHHhh
Confidence            88865

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.61  E-value=2.8e-13  Score=135.65  Aligned_cols=324  Identities=13%  Similarity=0.051  Sum_probs=185.7

Q ss_pred             CCcEEecCcccCCCCCCCCchHH-HHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeec-CCc
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDV-VKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG-LSG  160 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~-v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t-~gg  160 (467)
                      |..++|..|-      .+ +++. |++++........+....-..-..+.|+.++++++...     +++|++  + .+|
T Consensus        11 ~~~~~f~~Gp------~~-~~~~~v~~a~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~-----~~~v~~--~~gs~   76 (378)
T PRK03080         11 PADPRFSSGP------CK-KRPGWQLEALADALLGRSHRQKPVKALLKRVIEGTRELLSLPE-----GYEVGI--VPGSD   76 (378)
T ss_pred             CCCCCcCCCC------cC-CChHHHHHHHHhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCC-----CceEEE--ECCch
Confidence            3455666552      22 2455 88888765432111111113446788888998876431     457877  6 489


Q ss_pred             hhHHHHHHHHHHHhCC-CCEEEEcCCCCcc-hHH-HHhhCCC-CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeC
Q 012238          161 TGSLRLAAALIERYFP-GAKVLISSPTWGN-HKN-IFNDARV-PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG  236 (467)
Q Consensus       161 t~al~l~~~~l~~~~~-gd~Vlv~~P~y~~-~~~-~~~~~G~-~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~  236 (467)
                      |++++.+  +...+.+ ++.|++ +-.|+. +.. +.+..|+ +++.++.  +.+..+|++.+    +   . ++++.++
T Consensus        77 T~~~~~~--~~~l~~~~~~~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~--~~g~~~d~~~i----~---~-~~~V~~~  143 (378)
T PRK03080         77 TGAWEMA--LWSLLGARRVDHLA-WESFGSKWATDVVKQLKLEDPRVLEA--DYGSLPDLSAV----D---F-DRDVVFT  143 (378)
T ss_pred             HHHHHHH--HHhcCCCCcceEEE-eCHHHHHHHHHHHhhcCCCCceEecc--CCCCCCCHhhc----C---C-CCCEEEE
Confidence            9999997  3434543 344444 444432 333 2366798 8888877  34456776653    2   1 3357778


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc-cCCCccce
Q 012238          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGA  315 (467)
Q Consensus       237 ~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~  315 (467)
                      +.+|.||..++.+   +|++  +++|+++|+|.+ +.+.....  +..   .      -.+++.|..|.++ ++|  +|+
T Consensus       144 h~~t~tG~~~pi~---~I~~--~~~g~~~vVDa~-qs~G~~pi--dv~---~------iD~~~~s~~K~l~~P~G--~g~  204 (378)
T PRK03080        144 WNGTTTGVRVPVA---RWIG--ADREGLTICDAT-SAAFALPL--DWS---K------LDVYTFSWQKVLGGEGG--HGM  204 (378)
T ss_pred             ecCCccceeccch---hhcc--ccCCCeEEEecc-cccccCCC--CHH---H------CcEEEEehhhhCCCCCc--eEE
Confidence            8999999999966   5555  678999999998 55554322  211   1      1477888889885 467  577


Q ss_pred             EEEecCCHHHHhhhhhhh--------HHHHHH---HHHhhccCccCC-CchHHHHHHHHHhCChhhHHHHHH-HHHHHHH
Q 012238          316 MNVVCSSSDLAARCCEVA--------VIQVKS---QLKRLARPMYSN-PPVHGARIVANVVGNPALFDEWKA-EMEMMAG  382 (467)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~--------~~~~~~---~l~~~~~~~~~~-~~~~~~~~~~~~L~~~~~~~~~~~-~l~~~~~  382 (467)
                      ++   .+++.+++ +++.        +.++..   .+.......+.+ ++..+..++..+|+   +..  +. .++++.+
T Consensus       205 l~---v~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~---~l~--~~gG~e~i~~  275 (378)
T PRK03080        205 AI---LSPRAVER-LESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLD---WAN--SIGGLDALIA  275 (378)
T ss_pred             EE---ECHHHHHh-hhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHH---HHH--HcCCHHHHHH
Confidence            75   45666654 1110        100011   011111111222 22222222222221   111  12 3677888


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCccccc--C--Cc-ceEEec--C----CCHHHHHHHHHcccEEEeCC------C--eEE
Q 012238          383 RIKNVRQKLFDSLSAKDKSGKDWSFIL--R--QI-GMFSFT--G----LNKAQSDNMTNKWHVYMTKD------G--RIS  443 (467)
Q Consensus       383 ~~~~~r~~l~~~l~~~~g~~~~~~~~~--~--~~-g~f~~~--~----l~~~~~~~ll~~~gI~v~~g------g--Ris  443 (467)
                      +.+++.+++++.|+ +++.   +....  +  .+ +...+.  +    .+.++..+++++ ||.+..|      +  |||
T Consensus       276 r~~~l~~~l~~~l~-~~~~---~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~~~-~i~v~~g~~~~~~~~vRis  350 (378)
T PRK03080        276 RTAANASVLYDWAE-KTPW---ATPLVADPATRSNTSVTLDFVDAQAAVDAAAVAKLLRE-NGAVDIEPYRDAPNGLRIW  350 (378)
T ss_pred             HHHHHHHHHHHHHH-hCCC---cccccCCccccCccEEEEEcCCchHHHHHHHHHHHHHc-CCeeccccccCCCCcEEEe
Confidence            88889999999998 7762   22221  1  12 333331  2    233456666665 7777543      2  999


Q ss_pred             eccC-ChhhHHHHHHHHHHHHHhc
Q 012238          444 LAGL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       444 ~~~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                      +... +++++++++++|+++++++
T Consensus       351 ~~~~~t~~di~~l~~al~~~~~~~  374 (378)
T PRK03080        351 CGPTVEPADVEALTPWLDWAFERL  374 (378)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHH
Confidence            7654 6699999999999988764

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.61  E-value=7.2e-13  Score=131.76  Aligned_cols=212  Identities=14%  Similarity=0.134  Sum_probs=135.7

Q ss_pred             CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH----HHHhhCCCC
Q 012238          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK----NIFNDARVP  200 (467)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~----~~~~~~G~~  200 (467)
                      .+...+|.+.++++...        +..++  +++|+.|++++  +++.+.+||+|+++.+.|....    ..+...|++
T Consensus        63 ~P~~~~lE~~la~leg~--------~~av~--~sSG~aAi~~a--l~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~  130 (384)
T PRK06434         63 NPTVQAFEEKYAVLENA--------EHALS--FSSGMGAITSA--ILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIH  130 (384)
T ss_pred             ChhHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcE
Confidence            44577888999999643        24555  79999999998  5566889999999988765443    566788999


Q ss_pred             eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012238          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (467)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~  280 (467)
                      ++.++.++++.+.         +.  +.+++++++.+|.|||+.+.+   +++|+++|++++  +++|.++......   
T Consensus       131 v~fvd~~~~~~~~---------l~--~~~tklv~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~~~~---  191 (384)
T PRK06434        131 VDYIDTDRLNSLD---------FD--PSNYDLIYAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASPYNQ---  191 (384)
T ss_pred             EEEECCCChhhee---------ec--CCCeeEEEEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCcccC---
Confidence            9999874322222         22  146789999999999998755   557777799998  4569995322211   


Q ss_pred             CChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHH
Q 012238          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV  360 (467)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  360 (467)
                         .++    .. .-.+++.|.+|.++-+|-=+|.++ ++.++++.++            ++..........+.+..+++
T Consensus       192 ---~pl----~~-gaDivv~S~tK~i~G~~d~~gG~v-v~~~~~~~~~------------~~~~~~~~G~~~~~~~A~l~  250 (384)
T PRK06434        192 ---NPL----DL-GADVVIHSATKYISGHSDVVMGVA-GTNNKSIFNN------------LVERRKTLGSNPDPIQAYLA  250 (384)
T ss_pred             ---Cch----hc-CCCEEEeecccccCCCCCceEEEE-ecCcHHHHHH------------HHHHHHhcCCCCCHHHHHHH
Confidence               112    11 245888999999976553345543 3567766665            33222222333344433333


Q ss_pred             HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       361 ~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                      ..-|+          .+..+.++..++...+.+.|+ ..
T Consensus       251 ~~gL~----------tL~~R~~r~~~~a~~~a~~L~-~~  278 (384)
T PRK06434        251 LRGLK----------TLGLRMEKHNKNGMELARFLR-DS  278 (384)
T ss_pred             HhCCC----------cHHHHHHHHHHHHHHHHHHHH-cC
Confidence            22222          245556666677777777777 54

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.59  E-value=2.7e-13  Score=147.68  Aligned_cols=344  Identities=12%  Similarity=0.085  Sum_probs=193.9

Q ss_pred             ccCCCCCCCC-chHHHHHHHHHHHhc---CCCCcCC----CCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCCchh
Q 012238           92 AYRTEELQPY-VLDVVKKAENLMLER---GENKEYL----PIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGTG  162 (467)
Q Consensus        92 ~~~d~~~~p~-~~~~v~~a~~~~~~~---~~~~~Y~----~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt~  162 (467)
                      .|+|..+..+ .+..|.+++......   +....|.    ...-+.+.|+.+|++++...     .+ .|++  |.|+|+
T Consensus        36 iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~-----~~~~VvF--tsnaT~  108 (805)
T PLN02724         36 VYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPP-----SDYACVF--TSGATA  108 (805)
T ss_pred             EeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCc-----cceEEEE--eCChHH
Confidence            3555555444 345667666655422   1111121    12247889999999986541     23 5777  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchH---HHHhhCCCCeEEeeeecC------CCCCCCh--hhHHHHHH----c--
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHK---NIFNDARVPWSEYRYYDP------KTVGLDF--EGMIADIK----A--  225 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~~~------~~~~~d~--~~l~~~l~----~--  225 (467)
                      |+++++..+ .+.+||+|++..-.|....   ..++..|+++..++.+.+      ....++.  +.+++.++    .  
T Consensus       109 alnlva~~l-~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~  187 (805)
T PLN02724        109 ALKLVGETF-PWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKRE  187 (805)
T ss_pred             HHHHHHHHC-CCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhcccc
Confidence            999974332 2468999999776665433   334567999999887411      1222333  55655432    1  


Q ss_pred             -CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc-----CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012238          226 -APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK-----NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (467)
Q Consensus       226 -~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~-----~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (467)
                       ..++++++.++..+|-||..++.+++.++.+.+.++     ++++++|.+ +......++.         ....-.+++
T Consensus       188 ~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaa-Q~~g~~piDv---------~~~~~Dfl~  257 (805)
T PLN02724        188 DDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAA-KGCGTSPPDL---------SRYPADFVV  257 (805)
T ss_pred             ccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehh-hhcCCCCCCh---------hhcCCCEEE
Confidence             124567999999999999999998655444433222     367999998 5554432221         111346788


Q ss_pred             ecCccCcc-cCCCccceEEEecCCHHHHhhhhhhhHH--H---------HHHHHHh-hccCccCCCchHHHHHHHHHhCC
Q 012238          300 QSYSKNLG-LYAERIGAMNVVCSSSDLAARCCEVAVI--Q---------VKSQLKR-LARPMYSNPPVHGARIVANVVGN  366 (467)
Q Consensus       300 ~S~SK~~~-~~G~RiG~~~~v~~~~~~~~~~~~~~~~--~---------~~~~l~~-~~~~~~~~~~~~~~~~~~~~L~~  366 (467)
                      .|+.|.+| +.|  +|+++   ..++..+.-.+..++  .         +...... -.+.....++..+..++..+++ 
T Consensus       258 ~S~HK~~GgP~G--~G~L~---vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~-  331 (805)
T PLN02724        258 VSFYKIFGYPTG--LGALL---VRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFK-  331 (805)
T ss_pred             EecceeccCCCC--ceEEE---EehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHH-
Confidence            99999998 556  58876   334444330000000  0         0000000 0000011222222222322221 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-CC--CcccccC---------CcceEEec--CC-----CHHHHHH
Q 012238          367 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS-GK--DWSFILR---------QIGMFSFT--GL-----NKAQSDN  427 (467)
Q Consensus       367 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~-~~--~~~~~~~---------~~g~f~~~--~l-----~~~~~~~  427 (467)
                        +..  +-.++++.++.++..+++.+.|+ ++.. ++  .++++.+         .++.+.|.  +.     ...++.+
T Consensus       332 --~l~--~ig~~~I~~~~~~L~~~l~~~L~-~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~  406 (805)
T PLN02724        332 --LLN--RLTISAIAMHTWALTHYVANSLR-NLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEK  406 (805)
T ss_pred             --HHH--HhChHHHHHHHHHHHHHHHHHHH-hccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHH
Confidence              111  11256777888888999999988 6531 00  1333322         34554443  32     3455667


Q ss_pred             HHHcccEEEeCC-----------------------------------------C--eEEeccC-ChhhHHHHHHHHHHHH
Q 012238          428 MTNKWHVYMTKD-----------------------------------------G--RISLAGL-SLAKCEYLADAIIDSY  463 (467)
Q Consensus       428 ll~~~gI~v~~g-----------------------------------------g--Ris~~~~-~~~~i~~~~~~l~~~l  463 (467)
                      +++++||.++.|                                         |  |+||+.+ +.+|+++++++|++.+
T Consensus       407 l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~  486 (805)
T PLN02724        407 LASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF  486 (805)
T ss_pred             HHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence            777778877321                                         4  8998866 5589999999999976


Q ss_pred             H
Q 012238          464 H  464 (467)
Q Consensus       464 ~  464 (467)
                      .
T Consensus       487 ~  487 (805)
T PLN02724        487 V  487 (805)
T ss_pred             h
Confidence            3

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.59  E-value=2e-12  Score=130.89  Aligned_cols=340  Identities=13%  Similarity=0.047  Sum_probs=185.7

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +...||+..|.-...-|.  -.|.|.+++.+.++......+ +.....+|-+.+.+.+..      ..+++.+  +++|+
T Consensus        52 G~~yiD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~~~~~~-~~~~~~~la~~L~~~~~~------~~~~v~f--~~SGs  120 (433)
T PRK00615         52 GKTFIDFCGSWGSLIHGH--SHPKICDAIQQGAERGTSYGL-TSEQEILFAEELFSYLGL------EDHKIRF--VSSGT  120 (433)
T ss_pred             CCEEEEcccchhccccCC--CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHhCCC------CcCEEEE--eCchH
Confidence            457899987754212232  368888888888765432222 333334444455544311      1257888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCCC---e-EEe--e-eecC-CC-CCCChhhHHHHHHcCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVP---W-SEY--R-YYDP-KT-VGLDFEGMIADIKAAPG  228 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~---~-~~v--~-~~~~-~~-~~~d~~~l~~~l~~~~~  228 (467)
                      +|.+.+.++........+|+...-+|.++...    ....+-.   . ..+  + .... .. .-.|.+.+++.+.+...
T Consensus       121 EA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~  200 (433)
T PRK00615        121 EATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGH  200 (433)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCC
Confidence            99999866544443335788888888775321    1111100   0 000  0 0000 00 01377888888875444


Q ss_pred             CcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          229 GSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      +..++++-....-.|... +.+.+++|.++|++||+++|+||+..++..+.    .... ....-.++++   .++|.+|
T Consensus       201 ~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~----~ga~-~~~gv~PDi~---~~gK~lg  272 (433)
T PRK00615        201 RVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQ----GGAA-AIYHVKPDIT---VYGKILG  272 (433)
T ss_pred             ceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccccH----hHHH-HhcCCCCCeE---EEccccc
Confidence            555666555555556655 57789999999999999999999987773331    1111 1112223433   3799998


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc---cCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA---RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  384 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~  384 (467)
                       .|+.+|+++   +++++++.            +....   ...+.+.+.+...++...|+-  +.+  ++.+++..+.-
T Consensus       273 -gG~p~~av~---~~~~i~~~------------~~~~~~~~~~~T~~g~p~~~aa~la~L~~--i~~--~~~~~~~~~~g  332 (433)
T PRK00615        273 -GGLPAAAVV---AHKSIMDH------------LAPEGTIFQAGTLSGNPLAMAAGKASINL--CRE--QGFYTQLSTLE  332 (433)
T ss_pred             -CCcceeeee---ecHHHHhh------------hcCCCCcccCCCCcccHHHHHHHHHHHHH--Hhc--ccHHHHHHHHH
Confidence             677788884   78887776            42111   111223344444555444431  100  01112222222


Q ss_pred             HHHHHHHHHHhhhccCCCCCcccccCCcceEEe-c-CC-----------CH----HHHHHHHHcccEEEeCCC----eEE
Q 012238          385 KNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF-T-GL-----------NK----AQSDNMTNKWHVYMTKDG----RIS  443 (467)
Q Consensus       385 ~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~-~-~l-----------~~----~~~~~ll~~~gI~v~~gg----Ris  443 (467)
                      ...++.|.+.+. +.|++  +.... .|.++.+ + .-           +.    .+...+++ +||++.+..    -||
T Consensus       333 ~~l~~~l~~~~~-~~g~~--v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~~~ls  407 (433)
T PRK00615        333 QNFLSPIEEMIR-SQGFP--VSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFS-KGVYLSPSPFEASFLS  407 (433)
T ss_pred             HHHHHHHHHHHH-HcCCC--eEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHH-CCeeecCcccccccee
Confidence            222333344444 44432  22222 3333311 1 10           11    23445555 599998864    366


Q ss_pred             eccCChhhHHHHHHHHHHHHHhc
Q 012238          444 LAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       444 ~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ... ++++++++++++.++++++
T Consensus       408 ~~h-t~~did~~~~a~~~~~~~~  429 (433)
T PRK00615        408 SAH-SMENLDYAQNVLIDSLEKV  429 (433)
T ss_pred             cCC-CHHHHHHHHHHHHHHHHHH
Confidence            666 8999999999999999864

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.59  E-value=4.5e-12  Score=129.08  Aligned_cols=342  Identities=12%  Similarity=0.026  Sum_probs=185.4

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.||+..|..-..-|.  -.|.|.+++.+.+.... +...+ .-..+....+|+.+....... ..+++.+  +++|+
T Consensus        53 G~~ylD~~~g~~~~~lGh--~~p~v~~Ai~~ql~~~~-~~~~~-~~~~~~~~~lAe~L~~~~p~~-~~~~v~f--~~SGs  125 (441)
T PRK05769         53 GNVYLDFNAGIAVTNVGH--AHPKVVKAVKEQAEKFL-HYSLT-DFYYEPAVELAERLVEIAPGG-FEKKVFF--TNSGT  125 (441)
T ss_pred             CCEEEECCCchhhcccCC--CCHHHHHHHHHHHHhcc-CccCc-ccCCHHHHHHHHHHHHhCCCC-CCCEEEE--CCchH
Confidence            457899988754222232  36778888888775422 11100 001122334444443321100 0258888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-hhCCC-------------CeEEeeeecCCC--CC-C--------Ch
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDARV-------------PWSEYRYYDPKT--VG-L--------DF  216 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~-~~~G~-------------~~~~v~~~~~~~--~~-~--------d~  216 (467)
                      +|.+.+.++........+|+...-+|.+..... ...|.             .+..++..+...  +. -        +.
T Consensus       126 EA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (441)
T PRK05769        126 ESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVL  205 (441)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHH
Confidence            999998665444444468888888887654322 22111             122222210000  00 0        12


Q ss_pred             hhHHH-HHHc--CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc
Q 012238          217 EGMIA-DIKA--APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR  292 (467)
Q Consensus       217 ~~l~~-~l~~--~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~  292 (467)
                      +.+++ .++.  .+.+..++++-..+.-.|.. .+.+.+++|.++|++||+++|+||++.++...+   ..+....+ ..
T Consensus       206 ~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G---~~~a~~~~-gv  281 (441)
T PRK05769        206 DFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTG---KMFAIEHF-GV  281 (441)
T ss_pred             HHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---ceehhhcc-CC
Confidence            33555 2221  23455666665555556664 457889999999999999999999998774321   11111111 11


Q ss_pred             CCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHH
Q 012238          293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDE  372 (467)
Q Consensus       293 ~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~  372 (467)
                      .++++   +|+|.++ .|+++|+++   .++++.+.            ........+ +.+.+++.++...|+-  +   
T Consensus       282 ~pDiv---t~~K~l~-~G~p~gav~---~~~~i~~~------------~~~~~~~T~-~g~p~~~aaa~a~L~~--l---  336 (441)
T PRK05769        282 EPDII---TLAKAIA-GGLPLGAVI---GRAELMFL------------PPGSHANTF-GGNPVAAAAALATLEE--L---  336 (441)
T ss_pred             CCCEE---EEccccc-CCcccEEEE---Eehhhhhc------------CCCCCCCCC-CcCHHHHHHHHHHHHH--H---
Confidence            23443   4799999 899999985   66666543            222222223 3455666666655531  1   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccC--CCCCcccccCCcceEE--ecCC----C----HHHHHHHHHcccEEEeCCC
Q 012238          373 WKAEMEMMAGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFS--FTGL----N----KAQSDNMTNKWHVYMTKDG  440 (467)
Q Consensus       373 ~~~~l~~~~~~~~~~r~~l~~~l~~~~g--~~~~~~~~~~~~g~f~--~~~l----~----~~~~~~ll~~~gI~v~~gg  440 (467)
                       + +  ...++.+++-++|.+.|+ ++.  .+. ...+...|.++.  +.+.    +    ..+.+.+++ +||++.+.|
T Consensus       337 -~-~--~~~~~~~~~g~~l~~~L~-~l~~~~~~-~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~Gil~~~~~  409 (441)
T PRK05769        337 -E-E--GLLENAQKLGEYLRKELK-ELKEKYEF-IGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFK-RGLLLLGAG  409 (441)
T ss_pred             -H-H--HHHHHHHHHHHHHHHHHH-HHHHhCCC-eeeeecceEEEEEEeccCCccccHHHHHHHHHHHHh-CCcEEecCC
Confidence             1 1  344555555566666665 432  110 111222232221  1111    1    123445554 699998765


Q ss_pred             ----eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          441 ----RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 ----Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                          ||+... +++++++++++++.+++.++
T Consensus       410 ~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  440 (441)
T PRK05769        410 KSAIRIIPPLIITEEEADIGLEILEEAIKEL  440 (441)
T ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                666432 48899999999999998765

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.58  E-value=7.2e-12  Score=127.31  Aligned_cols=336  Identities=14%  Similarity=0.077  Sum_probs=188.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +...||+..|.--..-|.  -.|.|.+++.+.+.......+ +.....++-+.+++...   +    .+++.+  +++|+
T Consensus        52 G~~ylD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~~~~~~-~~~~~~~la~~l~~~~p---~----~~~v~f--~~sGs  119 (428)
T PRK12389         52 GNKYIDYLAAYGPIITGH--AHPHITKAITEAAENGVLYGT-PTELEIEFAKMLKEAIP---S----LEKVRF--VNSGT  119 (428)
T ss_pred             CCEEEEccccccccccCC--CCHHHHHHHHHHHHhCCccCC-CCHHHHHHHHHHHHhCC---C----CcEEEE--eCCHH
Confidence            457899987754222222  367888888888765432222 33333444444444421   1    357888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-HhhCCCCeE--------Eeee-ecCCC---CCCChhhHHHHHHcCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNI-FNDARVPWS--------EYRY-YDPKT---VGLDFEGMIADIKAAPG  228 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~-~~~~G~~~~--------~v~~-~~~~~---~~~d~~~l~~~l~~~~~  228 (467)
                      +|.+.+.++........+|+...-+|...... +...|....        .++. ..++.   .-.|++.+++.+++...
T Consensus       120 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~  199 (428)
T PRK12389        120 EAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGD  199 (428)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCC
Confidence            99999866554444446888888888765432 222221110        0000 00000   01378889888875444


Q ss_pred             CcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          229 GSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      ....+++-..+.-.|.+. +.+.+++|.++|++||+++|.||+..+|..+.    .... ....-.+++   -+++|.++
T Consensus       200 ~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~----~~a~-~~~gv~PDi---vt~gK~lg  271 (428)
T PRK12389        200 EVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMY----GGAQ-DLLGVEPDL---TALGKIIG  271 (428)
T ss_pred             cEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCc----chhh-HHhCCCCCe---eeechhhc
Confidence            556666666666667654 67789999999999999999999988774321    1111 111222343   36799998


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHh---hccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKR---LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  384 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~  384 (467)
                       .|+.+|.++   .++++.+.            +..   .....+.+.++++..++.+.|+-  +    ++  +...++.
T Consensus       272 -gG~Pi~av~---~~~~i~~~------------~~~~~~~~~~~T~~gnpl~~Aaala~L~~--l----~~--~~l~~~~  327 (428)
T PRK12389        272 -GGLPIGAYG---GRKDIMEQ------------VAPLGPAYQAGTMAGNPASMAAGIACLEV--L----QQ--EGVYEKL  327 (428)
T ss_pred             -CCCceeEEe---EHHHHHhh------------hccCCCcccccCCccCHHHHHHHHHHHHH--H----hc--ccHHHHH
Confidence             789899984   67777766            321   11111223445555555544431  1    00  1233334


Q ss_pred             HHHHHHHHHHhhh---ccCCCCCcccccCCcceE-Eec-C--C---------C----HHHHHHHHHcccEEEeCCC----
Q 012238          385 KNVRQKLFDSLSA---KDKSGKDWSFILRQIGMF-SFT-G--L---------N----KAQSDNMTNKWHVYMTKDG----  440 (467)
Q Consensus       385 ~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f-~~~-~--l---------~----~~~~~~ll~~~gI~v~~gg----  440 (467)
                      +++-+++.+.|++   +.+..  ..+. ..+|++ +.+ .  .         +    ..+...+++ +||++.+.+    
T Consensus       328 ~~~g~~l~~~L~~l~~~~~~~--~~v~-r~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~~  403 (428)
T PRK12389        328 DRLGAMLEEGILEAAEKHGIT--ITIN-RLKGALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLN-QGINLAPSKYEAW  403 (428)
T ss_pred             HHHHHHHHHHHHHHHHhCCCC--EEEE-ecCcEEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHH-CCcEeecCCCCCe
Confidence            4444444444440   23321  1211 223343 211 1  0         1    123445554 699998864    


Q ss_pred             eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          441 RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .+++.. ++++++++++++.++++++
T Consensus       404 ~~~l~~-t~e~id~~~~~l~~~l~~~  428 (428)
T PRK12389        404 FLTTAH-TEEDIEETLEAVDRAFAQL  428 (428)
T ss_pred             eecCCC-CHHHHHHHHHHHHHHHHhC
Confidence            344444 8899999999999998764

>PLN03032 serine decarboxylase; Provisional

Probab=99.57  E-value=2.3e-12  Score=127.40  Aligned_cols=286  Identities=13%  Similarity=0.044  Sum_probs=176.7

Q ss_pred             hHHHHHHHHHHHhCCCCcccccCce--eeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEee
Q 012238          128 LAAFNKVTAELLFGADNSVLKEQRV--ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYR  205 (467)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i--~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~  205 (467)
                      ..+.++.++++++..      ++++  ++  |+|||+|+..+........++..|+++.-.+......++.+|..++.+|
T Consensus        68 e~~v~~~ia~llg~~------~~~~~G~f--TsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~  139 (374)
T PLN03032         68 EVGVLDWFARLWELE------KDEYWGYI--TTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMEAVKVP  139 (374)
T ss_pred             HHHHHHHHHHHhCCC------CccCCEEE--eCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHcCCCCeEee
Confidence            456666677776542      5555  66  9999999988733222223566899998899889999999999999999


Q ss_pred             eecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC-----CeeEEeccCCCCCCCCCC
Q 012238          206 YYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN-----HIPFFDVAYQGFASGSLD  280 (467)
Q Consensus       206 ~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~-----~~li~Deay~~~~~~~~~  280 (467)
                      +  +.++.+|++.|++.+++...++.+++++..+|+||.+-+.+   +|+++|+++|     +++.+|.+|.++... ..
T Consensus       140 ~--d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~---eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p-~~  213 (374)
T PLN03032        140 T--LPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLD---RILRILKELGYTEDRFYIHCDGALFGLMMP-FV  213 (374)
T ss_pred             e--CCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHH---HHHHHHHHhCCCCCCeeEEEEccchhhhhh-cc
Confidence            8  44678999999999985433677888888999999987766   6666688986     589999997664321 00


Q ss_pred             CChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC-------ccCCCc
Q 012238          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP-------MYSNPP  353 (467)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~  353 (467)
                      ...+.+ .+. . .-.-+.-|.+|.++.| ..+|.++  ..+ +.++.            +......       ...+-+
T Consensus       214 ~~~~~~-~~~-~-~vDSis~s~HK~~g~P-~g~G~ll--~r~-~~~~~------------~~~~~~Yl~~~d~ti~gSR~  274 (374)
T PLN03032        214 SRAPEV-TFR-K-PIGSVSVSGHKFLGCP-MPCGVAL--TRK-KHVKA------------LSQNVEYLNSRDATIMGSRN  274 (374)
T ss_pred             CCCccc-CCC-c-CCcEEEECcccccCCC-cCeEEEE--EEc-hhhHh------------hccCCcccCCCCCcccCCCc
Confidence            000001 011 1 1345678899998833 3468775  233 33333            2111000       011111


Q ss_pred             ---hHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHH
Q 012238          354 ---VHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTN  430 (467)
Q Consensus       354 ---~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~  430 (467)
                         .+..++....+.        .+.+.++.++..+..+++.+.|+ +.++   ..+..|.....+|..-..+.   +.+
T Consensus       275 g~~~l~~w~~l~~~G--------~~g~~~~~~~~~~~a~~l~~~l~-~~~~---~~~~~p~~~~V~f~~~~~~~---~~~  339 (374)
T PLN03032        275 GHAPLYLWYTLRRKG--------YRGIKRDVQHCMRNAHYLKDRLT-EAGL---TCRLNELSSTVVFERPMDEA---FIK  339 (374)
T ss_pred             hHHHHHHHHHHHHhC--------HHHHHHHHHHHHHHHHHHHHHHH-hCCC---cEEECCCceEEEEcCCCcHh---Hhh
Confidence               222222222221        24466777888888888999998 7664   12345555544444332221   334


Q ss_pred             cccEEEeCCC-eEEecc-CChhhHHHHHHHHHH
Q 012238          431 KWHVYMTKDG-RISLAG-LSLAKCEYLADAIID  461 (467)
Q Consensus       431 ~~gI~v~~gg-Ris~~~-~~~~~i~~~~~~l~~  461 (467)
                      ++.+...++. ||.+.. .+.+.++++++-|++
T Consensus       340 ~w~l~~~~~~~hi~vm~~~~~~~id~fi~dl~~  372 (374)
T PLN03032        340 KWQLACEGDIAHVVVMPNVTVEKLDEFVEELVE  372 (374)
T ss_pred             eeeecccCCEEEEEECCCCCHHHHHHHHHHHhc
Confidence            5555554443 777654 466778888877765

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.57  E-value=1.9e-12  Score=125.41  Aligned_cols=187  Identities=19%  Similarity=0.150  Sum_probs=135.5

Q ss_pred             CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCCC
Q 012238          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVP  200 (467)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~  200 (467)
                      .+....+.+.+++.....        +.++  .++|+.|+..+  ++.++.+|++|+.....|.....+++    .+|++
T Consensus        76 nPt~~~le~~iaal~ga~--------~~l~--fsSGmaA~~~a--l~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie  143 (409)
T KOG0053|consen   76 NPTRDVLESGIAALEGAA--------HALL--FSSGMAAITVA--LLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGE  143 (409)
T ss_pred             CCchHHHHHHHHHHhCCc--------eEEE--ecccHHHHHHH--HHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCce
Confidence            344567888888885432        4656  79999999988  66677899999999999987766554    67777


Q ss_pred             eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012238          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (467)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~  280 (467)
                      ...++.       -|++++++.++   ++++++++-+|.||+..+.+.+   +|+++|+++|+++|+|+.+.....-   
T Consensus       144 ~~~vd~-------~~~~~~~~~i~---~~t~~V~~ESPsNPll~v~DI~---~l~~la~~~g~~vvVDnTf~~p~~~---  207 (409)
T KOG0053|consen  144 GDFVDV-------DDLKKILKAIK---ENTKAVFLESPSNPLLKVPDIE---KLARLAHKYGFLVVVDNTFGSPYNQ---  207 (409)
T ss_pred             eeeech-------hhHHHHHHhhc---cCceEEEEECCCCCccccccHH---HHHHHHhhCCCEEEEeCCcCccccc---
Confidence            777655       36677877777   5899999999999999987766   6666688999999999997766322   


Q ss_pred             CChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHH
Q 012238          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV  360 (467)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  360 (467)
                       ++.      .. .-.|++.|.+|.++-.+-=+|.++ +...+++..+            ++..+.....++++......
T Consensus       208 -~pL------~l-GADIV~hSaTKyi~Ghsdvi~G~i-v~n~~~~~~~------------l~~~~~~lg~~~~p~~~~ll  266 (409)
T KOG0053|consen  208 -DPL------PL-GADIVVHSATKYIGGHSDVIGGSV-VLNSEELASR------------LKFLQEDLGWCEDPFDLFLL  266 (409)
T ss_pred             -Chh------hc-CCCEEEEeeeeeecCCcceeeeEE-ecCcHHHHHH------------HHHHHHHhcCCCCHHHHHHH
Confidence             222      11 246899999999986666566664 2345777777            55555555556666654443

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.56  E-value=2.4e-12  Score=127.88  Aligned_cols=318  Identities=11%  Similarity=0.018  Sum_probs=183.2

Q ss_pred             CCCCchHHHHHHHHHHHhcCC-CCcCCC--CcchHHHHHHHHHHHhCCCCcccccCceeeeec-CCchhHHHHHHHHHHH
Q 012238           98 LQPYVLDVVKKAENLMLERGE-NKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQG-LSGTGSLRLAAALIER  173 (467)
Q Consensus        98 ~~p~~~~~v~~a~~~~~~~~~-~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t-~ggt~al~l~~~~l~~  173 (467)
                      |+..+++.|++++......-. ...+.+  ..-+.+.|+.++++++...     ..+|++  + .+||.+++.+  +...
T Consensus        10 GP~~~~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~-----~~~v~f--~~gs~T~a~~~~--~~~l   80 (361)
T TIGR01366        10 GPSKVRLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPD-----GYEVIL--GNGGATAFWDAA--TFGL   80 (361)
T ss_pred             CCcCCCHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCC-----CceEEE--ECCchhHHHHHH--HHhc
Confidence            334468889988764310000 011111  3456788999999976431     346766  5 5699999997  3333


Q ss_pred             hCCCCEEEEcCCCCc-chHHHHhhC--CCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH
Q 012238          174 YFPGAKVLISSPTWG-NHKNIFNDA--RVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQ  250 (467)
Q Consensus       174 ~~~gd~Vlv~~P~y~-~~~~~~~~~--G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~  250 (467)
                      +.+ +.+++..-.|. .+...++..  +.++..++..  ++..++.+     +.   ++++++.+++..|.||...+.++
T Consensus        81 ~~~-~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~-----~~---~~~~lV~~~h~et~tG~~~pi~~  149 (361)
T TIGR01366        81 IEK-KSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTAD--PGSAPEPQ-----AD---PGVDVIAWAHNETSTGVAVPVRR  149 (361)
T ss_pred             ccc-cccEEecCHHHHHHHHHHHhhhccCCceEEecC--CCCCCCCc-----cC---CCCCEEEEcccCCccceeccccc
Confidence            332 33344444443 344445542  2366777652  23333331     22   57889999999999999999775


Q ss_pred             HHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhh
Q 012238          251 WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCC  330 (467)
Q Consensus       251 l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~  330 (467)
                      +      ++++|+++|+|.+ +.+.....+.+         .  -.+++.|-.|.+|.+|- ++.+   ..+++.+++..
T Consensus       150 I------~~~~g~~~iVDav-qs~g~~~idv~---------~--~D~~~~s~~K~lg~~~G-l~~~---~~s~~~~~~~~  207 (361)
T TIGR01366       150 P------EGSDDALVVIDAT-SGAGGLPVDIA---------E--TDVYYFAPQKNFASDGG-LWLA---IMSPAALERIE  207 (361)
T ss_pred             c------cccCCCeEEEEcC-ccccCCCCCHH---------H--CCEEEEEchhhcCCCCc-eEEE---EECHHHHhhhh
Confidence            4      5789999999999 65554332211         1  24678889999998752 2332   35565554410


Q ss_pred             h--------hhHHHHHHHHHhhccCccCCCchHH-HHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          331 E--------VAVIQVKSQLKRLARPMYSNPPVHG-ARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       331 ~--------~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~L~~~~~~~~~~~-~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      .        +.+.++...+.......+.+.+.+. ..++..+++.  + .  +. .++.+.+++++..+++++.++ +.+
T Consensus       208 ~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~--l-~--~~gg~e~~~~r~~~l~~~l~~~l~-~~~  281 (361)
T TIGR01366       208 AIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDW--M-N--GNGGLDWAVARTADSSSRLYSWAQ-ERP  281 (361)
T ss_pred             cccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHH--H-H--HccCHHHHHHHHHHHHHHHHHHHH-hCC
Confidence            0        0012222222211111222333332 2222222221  1 0  11 256777889999999999998 776


Q ss_pred             CCCCccccc-C------CcceEEec-CCCHHHHHHHHHcccEEEeCC-----C---eEEeccC-ChhhHHHHHHHHHHHH
Q 012238          401 SGKDWSFIL-R------QIGMFSFT-GLNKAQSDNMTNKWHVYMTKD-----G---RISLAGL-SLAKCEYLADAIIDSY  463 (467)
Q Consensus       401 ~~~~~~~~~-~------~~g~f~~~-~l~~~~~~~ll~~~gI~v~~g-----g---Ris~~~~-~~~~i~~~~~~l~~~l  463 (467)
                      .   ++... .      ..+.+.|. +++.+.+...++++||.+.++     +   |||+... +.+++++++++|++++
T Consensus       282 ~---~~~~~~~~~~~s~~v~~v~~~~g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~  358 (361)
T TIGR01366       282 Y---ATPFVTDPGKRSQVVGTIDFVDDIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVV  358 (361)
T ss_pred             C---cccCCCChhhcccceEEEECCCccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence            3   22221 1      11334443 456666655556679999876     1   9997654 6799999999999998


Q ss_pred             Hhc
Q 012238          464 HNV  466 (467)
Q Consensus       464 ~~~  466 (467)
                      +++
T Consensus       359 ~~~  361 (361)
T TIGR01366       359 ERL  361 (361)
T ss_pred             hhC
Confidence            764

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.55  E-value=9.4e-13  Score=129.60  Aligned_cols=321  Identities=18%  Similarity=0.240  Sum_probs=179.7

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC------CCcc---hHHHHHHHHHHHhCCCCcccccCceee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEG---LAAFNKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~------~~~G---~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      +.|+|-..++       +++|.+++++...+......+|+      ...-   ++.+-...++.+++..    ..+.-+-
T Consensus        21 ~~l~LiaSEN-------~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~----~~~w~an   89 (399)
T PF00464_consen   21 STLNLIASEN-------YMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAE----PKEWYAN   89 (399)
T ss_dssp             HSEE-CTT------------HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-S----TTTEEEE
T ss_pred             cCccccCccc-------ccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCC----cccceEE
Confidence            5788887654       23788999988877554434332      1222   3333333344444431    0123455


Q ss_pred             eecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HH-------hhCCCCeEEeeeecCCCCCCChhhHHHHHH
Q 012238          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IF-------NDARVPWSEYRYYDPKTVGLDFEGMIADIK  224 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~---~~-------~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~  224 (467)
                      ||..+|+.|...+  +.+++.|||+|+..++...++..   ..       .....+.+.|+++ ++++.+|.+++++.++
T Consensus        90 vqp~SGs~An~av--~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d-~~~~~ID~d~l~~~a~  166 (399)
T PF00464_consen   90 VQPHSGSQANLAV--YMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVD-PDTGLIDYDELEKLAK  166 (399)
T ss_dssp             ---SSHHHHHHHH--HHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB--TTTSSB-HHHHHHHHH
T ss_pred             eecCCchHHHHHH--HHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeee-cCCCeECHHHHHHHHh
Confidence            6789999999887  67778899999999977765532   11       1123467778885 4578899999999998


Q ss_pred             cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCc
Q 012238          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (467)
Q Consensus       225 ~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S  303 (467)
                      +  .++++|++..-.+|-     .-+++++.++|.+.|.++++|.++. ++..++.-  ..++    +  .-.++.+|..
T Consensus       167 ~--~kPklIi~G~S~y~~-----~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~--~~P~----~--~ADvvt~sTh  231 (399)
T PF00464_consen  167 E--HKPKLIICGASSYPR-----PIDFKRFREIADEVGAYLMADISHIAGLIAGGLF--PNPF----P--YADVVTGSTH  231 (399)
T ss_dssp             H--H--SEEEEE-SSTSS--------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS----GC----C--TSSEEEEESS
T ss_pred             h--cCCCEEEECchhccC-----ccCHHHHHHHHHhcCcEEEecccccccceehhee--cCcc----c--cceEEEeecc
Confidence            7  455677766555443     3457788888999999999999953 44333211  1111    1  1348899999


Q ss_pred             cCcccCCCccceEEEecC-------------CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH-HHHHHhCChhh
Q 012238          304 KNLGLYAERIGAMNVVCS-------------SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR-IVANVVGNPAL  369 (467)
Q Consensus       304 K~~~~~G~RiG~~~~v~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~L~~~~~  369 (467)
                      |+|  +|-|-|.|.  +.             ++++.++            +.....+...+.+..... +.+..|.    
T Consensus       232 Ktl--~GPrggiI~--~~~~~~~~~~~~~~~~~~l~~~------------I~~avfP~~qg~~h~~~iaalAval~----  291 (399)
T PF00464_consen  232 KTL--RGPRGGIIL--TNKGSKNVDKKGKEIDEELAEK------------IDSAVFPGLQGGPHMHRIAALAVALK----  291 (399)
T ss_dssp             GGG---SSS-EEEE--ES-SEEEE-TTS-EEEHHHHHH------------HHHHHTTTT-SS--HHHHHHHHHHHH----
T ss_pred             ccc--cccCceEEE--EcCCccccCCcccccHHHHHHH------------hccccCCCcccCcchhHHHHHHHHHh----
Confidence            997  677778875  55             3666666            666655544433333222 2222221    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceE-EecC-----CCHHHHHHHHHcccEEEeC----C
Q 012238          370 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF-SFTG-----LNKAQSDNMTNKWHVYMTK----D  439 (467)
Q Consensus       370 ~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f-~~~~-----l~~~~~~~ll~~~gI~v~~----g  439 (467)
                       +....+.++..++..++.+.|.+.|. +.|    +++.....-.+ +|++     ++...+++.|++.||.+..    +
T Consensus       292 -ea~~~~fk~Ya~qVv~NAk~La~~L~-~~G----~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~  365 (399)
T PF00464_consen  292 -EALSPEFKEYAKQVVKNAKALAEALQ-ERG----FKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPG  365 (399)
T ss_dssp             -HHTSHHHHHHHHHHHHHHHHHHHHHH-HTT-----EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TT
T ss_pred             -cccCHHHHHHHHHHHHHHHHHHHHHh-hCC----cEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCC
Confidence             11112345677778888999999999 888    45554322223 4543     4667788999999998843    2


Q ss_pred             --------C-eEEec-----cCChhhHHHHHHHH
Q 012238          440 --------G-RISLA-----GLSLAKCEYLADAI  459 (467)
Q Consensus       440 --------g-Ris~~-----~~~~~~i~~~~~~l  459 (467)
                              | ||+..     ++.+++++++.+.|
T Consensus       366 d~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~I  399 (399)
T PF00464_consen  366 DRSPFVPSGLRLGTPALTRRGMKEEDMKEIAELI  399 (399)
T ss_dssp             TSTTTT-SEEEEESHHHHHTT--HHHHHHHHHHH
T ss_pred             CCCCCCCCEEEECCHHHHhCCCCHHHHHHHHhhC
Confidence                    3 88743     34677777776543

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.54  E-value=1.8e-11  Score=124.98  Aligned_cols=343  Identities=14%  Similarity=0.071  Sum_probs=187.1

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +.+.+|+..|.--..-|.  -.|.|.+++.+.++... ...|.+.....+|-+.+++..-..      -+++.+  +++|
T Consensus        81 G~~ylD~~~g~~~~~lGH--~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~~------~~~v~f--~~SG  150 (459)
T PRK11522         81 GQEFIDCLGGFGIFNVGH--RNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGK------LKYSFF--CNSG  150 (459)
T ss_pred             CCEEEECCcCHHhhhcCC--CCHHHHHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCCC------CCEEEE--eCCc
Confidence            457889877732112232  36788888888775421 122333333344444444442111      247888  9999


Q ss_pred             hhHHHHHHHHHHHhCC--C-CEEEEcCCCCcchHHHH-hhCCCCeEE---eeeecCCC--CCCChhhHHHHHHc---CCC
Q 012238          161 TGSLRLAAALIERYFP--G-AKVLISSPTWGNHKNIF-NDARVPWSE---YRYYDPKT--VGLDFEGMIADIKA---APG  228 (467)
Q Consensus       161 t~al~l~~~~l~~~~~--g-d~Vlv~~P~y~~~~~~~-~~~G~~~~~---v~~~~~~~--~~~d~~~l~~~l~~---~~~  228 (467)
                      ++|.+.+.++......  | .+|+...-+|.+..... ...|-....   .|..+.-.  .-.|.+.+++.++.   .+.
T Consensus       151 sEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~  230 (459)
T PRK11522        151 TESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGD  230 (459)
T ss_pred             hHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCC
Confidence            9999998665544432  3 36888888887654322 222211110   11100000  01367788887753   223


Q ss_pred             CcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          229 GSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      +...+++...+.-.|.. .+.+.++++.++|++||+++|+||+..+|.-.+   ..+.... ..-.++++   +++|.+|
T Consensus       231 ~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG---~~~a~e~-~gv~PDiv---t~gK~lg  303 (459)
T PRK11522        231 DVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTG---KMFACEH-ENVQPDIL---CLAKALG  303 (459)
T ss_pred             cEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccc---hhhhhhc-cCCCCCEE---Eechhhh
Confidence            44566666555556765 467789999999999999999999987663211   1122111 11123433   7799998


Q ss_pred             cCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012238          308 LYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  386 (467)
Q Consensus       308 ~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~  386 (467)
                       .| +.+|.++   ..+++.+.        +..  ....-..+.+.++++..++.+.|+.  +    ++  +...++.++
T Consensus       304 -gG~~Pigav~---~~~~i~~~--------~~~--~~~~~~~T~~gnp~~~Aaala~L~~--i----~~--~~l~~~~~~  361 (459)
T PRK11522        304 -GGVMPIGATI---ATEEVFSV--------LFD--NPFLHTTTFGGNPLACAAALATINV--L----LE--QNLPAQAEQ  361 (459)
T ss_pred             -CCCccceeEE---EcHHHHHH--------hcc--CCcccCCCCCCCHHHHHHHHHHHHH--H----hc--chHHHHHHH
Confidence             67 5889985   55666665        211  0111112223345555555444431  1    10  123455555


Q ss_pred             HHHHHHHHhhhccC--CCCCcccccCCcceEEecCC--C---HHHHHHHHHcccEEEeCC---C---eEEec-cCChhhH
Q 012238          387 VRQKLFDSLSAKDK--SGKDWSFILRQIGMFSFTGL--N---KAQSDNMTNKWHVYMTKD---G---RISLA-GLSLAKC  452 (467)
Q Consensus       387 ~r~~l~~~l~~~~g--~~~~~~~~~~~~g~f~~~~l--~---~~~~~~ll~~~gI~v~~g---g---Ris~~-~~~~~~i  452 (467)
                      +-++|.+.|+ ++.  .|..+..+... |.++-+.+  +   ..+...+++ +||++.+.   +   ||... .++++++
T Consensus       362 ~g~~l~~~L~-~l~~~~~~~i~~VrG~-Gl~~giel~~~~~~~~i~~~l~~-~Gvl~~~~~~~~~~lr~~Ppl~~t~~~i  438 (459)
T PRK11522        362 KGDYLLDGFR-QLAREYPDLVQEARGK-GMLMAIEFVDNEIGYNFASEMFR-QRVLVAGTLNNAKTIRIEPPLTLTIEQC  438 (459)
T ss_pred             HHHHHHHHHH-HHHHhCCCceeeEEec-eeEEEEEecCchHHHHHHHHHHH-CCeEEEecCCCCCEEEEECCccCCHHHH
Confidence            5566666665 442  11101112233 33332322  1   233455555 69999765   2   66654 2488999


Q ss_pred             HHHHHHHHHHHHhc
Q 012238          453 EYLADAIIDSYHNV  466 (467)
Q Consensus       453 ~~~~~~l~~~l~~~  466 (467)
                      ++++++|.++++++
T Consensus       439 d~~l~~l~~~l~~~  452 (459)
T PRK11522        439 EQVLKAARKALAAM  452 (459)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998754

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.53  E-value=1.1e-11  Score=123.04  Aligned_cols=341  Identities=13%  Similarity=0.080  Sum_probs=196.4

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +...|||..|..--.-|.  -+|.|.+|+++.++.-  ....|.+....-++-+.+.+.+-+.     ..+.+++  +++
T Consensus        55 G~~ylDf~sgi~v~~~GH--~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~~-----~~~~~~f--~~s  125 (447)
T COG0160          55 GNEYLDFLSGIAVLNLGH--NHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGS-----GLKKVFF--GNS  125 (447)
T ss_pred             CCEEEEcccCcchhccCC--CCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHhCCcc-----cCCeEEe--cCC
Confidence            457899999754222233  3688888888876442  2234434333334444444443221     2457888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-Hh-------------hCCCCeEEeeeecCCC--CCC--------C
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-FN-------------DARVPWSEYRYYDPKT--VGL--------D  215 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~-~~-------------~~G~~~~~v~~~~~~~--~~~--------d  215 (467)
                      |++|.+.+.++.........|+...-.|..-... +.             .....+..+|+.+.-.  ++.        .
T Consensus       126 GaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~  205 (447)
T COG0160         126 GAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDA  205 (447)
T ss_pred             cHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHH
Confidence            9999999977665555667899988888643221 11             1112355555532211  111        2


Q ss_pred             hhhHHHHHHc---CCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh
Q 012238          216 FEGMIADIKA---APGGSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT  291 (467)
Q Consensus       216 ~~~l~~~l~~---~~~~~~~i~i~~p~NPTG~~~~-~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~  291 (467)
                      .+.++..+..   .+.+...+++-.-+.-.|.+.+ .+-++++.++|++||+++|+||+-.++.-.+   .-|....+ .
T Consensus       206 ~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG---~~fa~E~~-g  281 (447)
T COG0160         206 LEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTG---KMFAFEHF-G  281 (447)
T ss_pred             HHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---cchhhhhc-C
Confidence            2334443332   2456777888888888887665 4568999999999999999999977776432   33333222 1


Q ss_pred             cCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHH
Q 012238          292 RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFD  371 (467)
Q Consensus       292 ~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~  371 (467)
                      -.+++|   +++|.+| .|+.+|.++   ..+++.+.            ....... +...+.++..++.+.|+-  +  
T Consensus       282 v~PDiv---t~aK~ig-~G~Pl~avv---~r~ei~~~------------~~g~~~~-Tf~GNpva~Aaa~AvL~v--i--  337 (447)
T COG0160         282 VEPDIV---TLAKSLG-GGLPLSAVV---GRAEIMDW------------PPGGHGG-TFGGNPVACAAALAVLDV--I--  337 (447)
T ss_pred             CCCCEE---Eeccccc-CCCceeEEe---ccHHhccc------------CCcccCC-CCCcCHHHHHHHHHHHHH--H--
Confidence            123444   4689999 599999995   77766543            2111222 344555565666555531  1  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC-cccccCCcceEEecCC---------CH----HHHHHHHHcccEEEe
Q 012238          372 EWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD-WSFILRQIGMFSFTGL---------NK----AQSDNMTNKWHVYMT  437 (467)
Q Consensus       372 ~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~-~~~~~~~~g~f~~~~l---------~~----~~~~~ll~~~gI~v~  437 (467)
                       +++   ...++.++.-+++.+.|+ ++.-... +--+.. -|+++-+.+         +.    ..+.++++ +|+.+.
T Consensus       338 -e~e---~L~~~a~~~G~~l~~~L~-~l~~~~~~IgdVRG-~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~-~Glil~  410 (447)
T COG0160         338 -EEE---NLLERAAELGEYLRDRLE-ELQEKHPLIGDVRG-LGLMIGVELVKDRDTKEPDAELAAKIVARAFE-RGLLLL  410 (447)
T ss_pred             -HHc---cHHHHHHHHHHHHHHHHH-HHHhhcCceecccc-cceEEEEEEecCCCCCCCCHHHHHHHHHHHHH-cCCEEe
Confidence             111   333444444444444444 3211000 111122 244443311         22    23556665 598888


Q ss_pred             CCC------eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          438 KDG------RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       438 ~gg------Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .+|      ||... .+++++++.+++.|.+++++.
T Consensus       411 ~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~~~  446 (447)
T COG0160         411 TCGPHGNVLRILPPLTISDEELDEGLDILEEALKEA  446 (447)
T ss_pred             ccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            876      77754 348899999999999999865

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.52  E-value=4.9e-11  Score=120.90  Aligned_cols=333  Identities=14%  Similarity=0.081  Sum_probs=183.1

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC-CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +.+.+|+..|.--..-|.  -.|.|.+++.+.+... ....|.......++-+.+++.....      -+++++  +++|
T Consensus        74 G~~ylD~~~g~~~~~lGh--~hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~~------~~~v~f--~~SG  143 (442)
T TIGR03372        74 GNEFIDCLGGFGIFNVGH--RNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGK------LKYSFF--CNSG  143 (442)
T ss_pred             CCEEEECCccHHhhhcCC--CCHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCCC------cCEEEE--eCCc
Confidence            457899977732111232  3677888888877532 2223333333344445555442111      246888  9999


Q ss_pred             hhHHHHHHHHHHHhC--CC-CEEEEcCCCCcchHHHHh-hCCCC------------eEEeeeecCCCCCCChhhHHHHHH
Q 012238          161 TGSLRLAAALIERYF--PG-AKVLISSPTWGNHKNIFN-DARVP------------WSEYRYYDPKTVGLDFEGMIADIK  224 (467)
Q Consensus       161 t~al~l~~~~l~~~~--~g-d~Vlv~~P~y~~~~~~~~-~~G~~------------~~~v~~~~~~~~~~d~~~l~~~l~  224 (467)
                      ++|.+.+.++.....  .| .+|+....+|.+...... ..|-.            +..+|.       .|.+.+++.++
T Consensus       144 sEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~-------~d~~~~~~~l~  216 (442)
T TIGR03372       144 TESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAF-------GDIEAMLKALN  216 (442)
T ss_pred             hHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCC-------CCHHHHHHHHH
Confidence            999999866654443  23 578988988876543222 21211            112221       36777777775


Q ss_pred             c---CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEe
Q 012238          225 A---APGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (467)
Q Consensus       225 ~---~~~~~~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  300 (467)
                      .   .+.+...+++..-+.--|... +++.++++.++|++||+++|+||+..+|.-.+   ..+.... ..-.++++   
T Consensus       217 ~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG---~~~a~e~-~gv~PDiv---  289 (442)
T TIGR03372       217 ECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTG---KMFACEH-EGVQPDIL---  289 (442)
T ss_pred             HHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccc---cchhhhh-cCCCCCee---
Confidence            3   234456666665555556655 67889999999999999999999987764221   1222211 12223433   


Q ss_pred             cCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238          301 SYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM  379 (467)
Q Consensus       301 S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~  379 (467)
                      +++|.+| .| +.+|.++   ..+++.+.        +..  ....-..+.+.++++..++.+.|+-  +    ++  +.
T Consensus       290 t~gK~lg-~G~~Pigavv---~~~~i~~~--------~~~--~~~~~~~T~~gnp~~~Aaa~a~L~~--i----~~--~~  347 (442)
T TIGR03372       290 CLAKALG-GGVMPIGATI---ATEAVFSV--------LFD--NPFLHTTTFGGNPLACAAALATINE--L----LE--KN  347 (442)
T ss_pred             eehhhhc-CCcccceEEE---ecHHHHHh--------hhc--cCccccCCCCCCHHHHHHHHHHHHH--H----Hh--cc
Confidence            3899998 77 5889985   56777665        211  1111112223345555555554431  1    00  12


Q ss_pred             HHHHHHHHHHHHHHHhhhccC--CCCCcccccCCcceEEecCC--C---HHHHHHHHHcccEEEeCC---C---eEEec-
Q 012238          380 MAGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFSFTGL--N---KAQSDNMTNKWHVYMTKD---G---RISLA-  445 (467)
Q Consensus       380 ~~~~~~~~r~~l~~~l~~~~g--~~~~~~~~~~~~g~f~~~~l--~---~~~~~~ll~~~gI~v~~g---g---Ris~~-  445 (467)
                      ..++.+++-+++.+.|+ ++.  .|..+.-+... |.++-+.+  +   ..+.+.+++ +||++.+.   +   ||... 
T Consensus       348 l~~~~~~~G~~l~~~L~-~l~~~~~~~i~~vRG~-Gl~~giel~~~~~~~~i~~~l~~-~Gvl~~~~~~~~~~lr~~Ppl  424 (442)
T TIGR03372       348 LPAQAAIKGDFLLDGFQ-QLAAEYPDLIIEARGK-GLLMAIEFRDNEIGYAFAKELFQ-QNILVAGTLNNAKSIRIEPPL  424 (442)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHhCCCceEEEecc-eEEEEEEeCChHHHHHHHHHHHH-CCcEEeecCCCCCEEEEECCc
Confidence            23334444455555554 331  11001112233 33433322  1   233555555 69998753   2   66654 


Q ss_pred             cCChhhHHHHHHHHHHHH
Q 012238          446 GLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       446 ~~~~~~i~~~~~~l~~~l  463 (467)
                      .++++++++++++|.+++
T Consensus       425 ~~t~~~id~~~~~l~~~~  442 (442)
T TIGR03372       425 TITIEQCALVIKAAKDAL  442 (442)
T ss_pred             ccCHHHHHHHHHHHHHhC
Confidence            248899999999998864

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK07046 aminotransferase; Validated

Probab=99.51  E-value=4.9e-11  Score=121.59  Aligned_cols=331  Identities=13%  Similarity=0.040  Sum_probs=185.5

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.|||..|.-...-|.  -.|.|.+++.+.++.+....+ +.....++-+.+++..    +    .+++.+  +++|+
T Consensus        74 G~~yiD~~~g~g~~~lGh--~~p~i~~Av~~q~~~~~~~~~-~~~~~~~lAe~l~~~~----~----~~~v~F--~nSGt  140 (453)
T PRK07046         74 GHRYDDFCLGDTGAMFGH--SPAPVARALAEQARRGLTTML-PSEDAAWVGEELARRF----G----LPYWQV--ATTAT  140 (453)
T ss_pred             CCEEEEecccccccccCC--CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHHh----C----CCEEEE--ECCHH
Confidence            357899977643111222  368888898888876543333 3333444555555542    1    357888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH--hhCCCCeE------Eee--eec---CCCCCCChhhHHHHHHcCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIF--NDARVPWS------EYR--YYD---PKTVGLDFEGMIADIKAAPG  228 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~--~~~G~~~~------~v~--~~~---~~~~~~d~~~l~~~l~~~~~  228 (467)
                      +|...+.++.......++|+...-+|.++....  ...+.+..      .++  ..+   ...+ .|++.+++.+..  .
T Consensus       141 EA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~--~  217 (453)
T PRK07046        141 DANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-NDLAALEAALAD--G  217 (453)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-CCHHHHHHHhCC--C
Confidence            999998666544444568999898887763211  10010000      000  000   0011 378899888853  3


Q ss_pred             CcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          229 GSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      +...+++-.-+.-.|.+ .+.+-++++.++|++||+++|+||+.. |..+-   ...  .....-.++++   .++|.++
T Consensus       218 ~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~---Gg~--~~~~gv~PDi~---t~gK~lg  288 (453)
T PRK07046        218 DVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGP---GGY--TRAHGLEPDFL---VVGKPIA  288 (453)
T ss_pred             CeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCC---cch--hHHhCCCccce---eehhhhc
Confidence            45555554444333544 456789999999999999999999965 43221   111  11112223443   4799999


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh---------ccCccCCCchHHHHHHHHHhC---ChhhHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL---------ARPMYSNPPVHGARIVANVVG---NPALFDEWKA  375 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~L~---~~~~~~~~~~  375 (467)
                       .|+.+|.++   +.+++.+.            +...         ....+.+.+.++..++...|+   ++++      
T Consensus       289 -gG~Pi~av~---g~~~i~~~------------~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~------  346 (453)
T PRK07046        289 -GGVPCAVYG---FSAELAER------------AQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAA------  346 (453)
T ss_pred             -CCCcceeee---ehHHHHHH------------HhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccH------
Confidence             789999884   77777766            3211         011122445555555554443   2211      


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceE-Eec-C------------CCH----HHHHHHHHcccEEEe
Q 012238          376 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF-SFT-G------------LNK----AQSDNMTNKWHVYMT  437 (467)
Q Consensus       376 ~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f-~~~-~------------l~~----~~~~~ll~~~gI~v~  437 (467)
                       +++..+.-...++.|.+.+. +.+++.  . +...|.++ +.+ +            .+.    .+...+++ +||++.
T Consensus       347 -~~~~~~~g~~l~~~L~~l~~-~~~~~~--~-v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~  420 (453)
T PRK07046        347 -YAHMLALAARLAAGLRAVIA-RHGLPW--H-VTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLN-RGVLIT  420 (453)
T ss_pred             -HHHHHHHHHHHHHHHHHHHH-hCCCCe--E-EEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHH-CCCEEe
Confidence             22222222223344444444 444321  2 22233333 221 1            011    22345555 599998


Q ss_pred             CCC---eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          438 KDG---RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       438 ~gg---Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +.+   +++.. +++++++++++++.++++++
T Consensus       421 ~~~~~~~~~p~-~t~~did~~~~~~~~~l~~~  451 (453)
T PRK07046        421 PFHNMMLVCPA-TTAADVDRLVAAFDACLGEL  451 (453)
T ss_pred             cccCcEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence            865   67765 59999999999999999865

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.50  E-value=1.5e-11  Score=124.51  Aligned_cols=214  Identities=16%  Similarity=0.110  Sum_probs=141.4

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC-----CcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~-----~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      .+||.+--.++++.+.++.++.+.+++.+.+.......|.-     ..-...+++.++++++..        ..++  ++
T Consensus        75 ~vinatg~v~~tNlg~s~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~gae--------~alv--v~  144 (454)
T TIGR00474        75 RVINATGVVLHTNLGRAPLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGAE--------DALV--VN  144 (454)
T ss_pred             ceeCCCCcEEeccCCCCCCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCCC--------cEEE--EC
Confidence            56775543555666666668999999988875422222321     112478889999996543        2344  57


Q ss_pred             CchhHHHHHHHHHHHhCCCCEEEEcCCCCcc------hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEE
Q 012238          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGN------HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~------~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~  232 (467)
                      +++.|+.++   +..+.+||+|+++...|..      +...++..|+++++++..    ...|+++++++++   +++++
T Consensus       145 sg~aAi~l~---l~~l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~----~~~~l~dle~aI~---~~T~l  214 (454)
T TIGR00474       145 NNAAAVLLA---LNTLAKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTT----NRTHLKDYEDAIT---ENTAL  214 (454)
T ss_pred             CHHHHHHHH---HHHhCCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCC----CCCCHHHHHHhcC---cCCEE
Confidence            888898886   3557899999999866422      234667889999988763    2357899999887   67889


Q ss_pred             EEeCCCCCCC--CC--CCCHHHHHHHHHHHHhcCCeeEEeccCCCCC----CCCCCCChhHHHHHHhcCCeEEEEecCcc
Q 012238          233 LLHGCAHNPT--GI--DPTPEQWEKIADVIQEKNHIPFFDVAYQGFA----SGSLDNDASSVRLFATRGMELLVAQSYSK  304 (467)
Q Consensus       233 i~i~~p~NPT--G~--~~~~~~l~~l~~~~~~~~~~li~Deay~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  304 (467)
                      +++.++.||+  |.  ..+   +++|+++|+++|+++++|.....+.    ++ .. ..+.+....+.+ -.++++|.+|
T Consensus       215 v~~~h~sN~~~~G~~~~~d---l~~I~~la~~~g~~vivD~~sG~l~~~~~~g-l~-~~p~~~~~~~~G-aDiv~fSg~K  288 (454)
T TIGR00474       215 LLKVHTSNYRIVGFTEEVS---IAELVALGREHGLPVMEDLGSGSLVDLSRYG-LP-DEPTVQEVIAAG-VDLVTFSGDK  288 (454)
T ss_pred             EEEEccCcccccCCCCCCC---HHHHHHHHHHcCCeEEEECCCcccccchhcc-CC-CCcccccHhHcC-CCEEEecCcc
Confidence            9999999996  53  344   5678888999999999998632221    11 00 011111122222 3488999999


Q ss_pred             CcccCCCccceEEEecCCHHHHhh
Q 012238          305 NLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       305 ~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                      .++-|  ..|+++   +.++.++.
T Consensus       289 ~LgGp--~~G~i~---g~~~~i~~  307 (454)
T TIGR00474       289 LLGGP--QAGIIV---GKKELIER  307 (454)
T ss_pred             ccCCC--eEEEEE---ECHHHHHh
Confidence            98655  368774   66777655

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK15029 arginine decarboxylase; Provisional

Probab=99.50  E-value=6.5e-12  Score=132.98  Aligned_cols=183  Identities=12%  Similarity=0.010  Sum_probs=125.0

Q ss_pred             CCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCe
Q 012238          122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPW  201 (467)
Q Consensus       122 Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~  201 (467)
                      +.|..-+.+..+..|+.++..       .-.++  ++|+|.++..+  +++.+.+||+|+++..|+-.....+...|+.+
T Consensus       201 ~~p~G~I~eAq~~aA~~fgA~-------~t~Fl--vNGST~gn~a~--i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~P  269 (755)
T PRK15029        201 LDHTGAFGESEKYAARVFGAD-------RSWSV--VVGTSGSNRTI--MQACMTDNDVVVVDRNCHKSIEQGLILTGAKP  269 (755)
T ss_pred             CCCCcHHHHHHHHHHHHhCCC-------cEEEE--eCChhHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHcCCeE
Confidence            435545677777777775432       34455  79999999876  67788899999999999999999999999999


Q ss_pred             EEeeeecCC---CCCCC-----hhhHHHHHHcCCCC-------cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012238          202 SEYRYYDPK---TVGLD-----FEGMIADIKAAPGG-------SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF  266 (467)
Q Consensus       202 ~~v~~~~~~---~~~~d-----~~~l~~~l~~~~~~-------~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li  266 (467)
                      ++++..-..   -.+++     ++.+++++++.+..       ++++++++|+ =-|++++.+   +|+++|+++++.|+
T Consensus       270 vyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PT-Y~Gv~~di~---~I~~~~h~~~~~ll  345 (755)
T PRK15029        270 VYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCYNAK---EAQDLLEKTSDRLH  345 (755)
T ss_pred             EEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCC-CcceeeCHH---HHHHHHHhcCCeEE
Confidence            998532111   12345     89999999775422       2256665442 238888765   67777999999999


Q ss_pred             EeccCCC-CCCCCCCCCh-hHHHH-HHh-cCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238          267 FDVAYQG-FASGSLDNDA-SSVRL-FAT-RGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (467)
Q Consensus       267 ~Deay~~-~~~~~~~~~~-~~~~~-~~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (467)
                      +||||.. +.|.+ .... .++.. ... .+..++++.|.+|++  +++.-|.++++.++
T Consensus       346 vDEAhGah~~F~~-~~p~~sa~~~~~~~~~Gad~~vvqStHKtL--~alTQaS~LHv~~~  402 (755)
T PRK15029        346 FDEAWYGYARFNP-IYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREG  402 (755)
T ss_pred             EECccccccccCc-cccccccccccccccCCCceEEEEchhhcc--cchhhhhhheeCCC
Confidence            9999853 34432 1111 11100 001 344569999999997  56888888776444

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.50  E-value=3.3e-13  Score=133.33  Aligned_cols=181  Identities=17%  Similarity=0.088  Sum_probs=119.7

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEE
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSE  203 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~  203 (467)
                      |..-+.+..+.+|+.++.+       +-.++  ++|+|.++..+  +++.+.|||+|+++..|+-.....+...|+.+++
T Consensus        64 p~G~I~eAe~~aA~~fGAd-------~t~fl--vnGsT~g~~a~--i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvy  132 (417)
T PF01276_consen   64 PEGIIKEAEELAARAFGAD-------KTFFL--VNGSTSGNQAM--IMALCRPGDKVLVDRNCHKSVYNALILSGAIPVY  132 (417)
T ss_dssp             TBTHHHHHHHHHHHHHTES-------EEEEE--SSHHHHHHHHH--HHHHTTTTCEEEEETT--HHHHHHHHHHTEEEEE
T ss_pred             CccHHHHHHHHHHHhcCCC-------eEEEE--ecCchHHHHHH--HHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEE
Confidence            4444677777788875432       34555  79999999998  7778899999999999999998999999999999


Q ss_pred             eeeecCCC---CCCCh-----hhHHHHHHcCCCCcE--EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC
Q 012238          204 YRYYDPKT---VGLDF-----EGMIADIKAAPGGSF--ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (467)
Q Consensus       204 v~~~~~~~---~~~d~-----~~l~~~l~~~~~~~~--~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~  273 (467)
                      ++..+++.   .++++     +.+++++++.+....  ++++++|+ =-|++++.+   +|+++|+++++.|++||||..
T Consensus       133 i~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PT-Y~Gv~~di~---~I~~~~h~~~~~llvDEAhGa  208 (417)
T PF01276_consen  133 IPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPT-YYGVCYDIK---EIAEICHKHGIPLLVDEAHGA  208 (417)
T ss_dssp             EEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS--TTSEEE-HH---HHHHHHCCTECEEEEE-TT-T
T ss_pred             ecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCC-CCeEEECHH---HHHHHhcccCCEEEEEccccc
Confidence            97652221   24566     999999998754433  34444332 238877755   777779999999999999763


Q ss_pred             C-CCCCCCCChhHHHHHHh--cCCeEEEEecCccCcccCCCccceEEEecCCH
Q 012238          274 F-ASGSLDNDASSVRLFAT--RGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (467)
Q Consensus       274 ~-~~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~  323 (467)
                      . .|.....+.  +..-++  ....++++.|..|++  +++.-+.++++..+.
T Consensus       209 h~~F~~lp~~a--~~~gad~~~~~~~~vvqS~HKtL--~altQts~lh~~~~~  257 (417)
T PF01276_consen  209 HFGFHPLPRSA--LALGADRPNDPGIIVVQSTHKTL--PALTQTSMLHVKGDR  257 (417)
T ss_dssp             TGGCSGGGTTC--SSTTSS-CTSBEEEEEEEHHHHS--SS-TT-EEEEEETCC
T ss_pred             cccCCCCccch--hhccCccccccceeeeechhhcc--cccccceEEEecCCC
Confidence            3 332111111  100011  223679999999997  678888888766654

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.49  E-value=2.2e-11  Score=109.79  Aligned_cols=315  Identities=16%  Similarity=0.108  Sum_probs=189.1

Q ss_pred             hHHHHHHHHHHHhcCCCCcCC--------CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh
Q 012238          103 LDVVKKAENLMLERGENKEYL--------PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY  174 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~--------~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~  174 (467)
                      ++..++++.+.-+.-....|.        ..+-+..|.+.+++++..+        .+-+  |+|+.++-+.+  +-+.+
T Consensus        30 t~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFlg~D--------~~R~--t~GARe~Kfav--Mhal~   97 (382)
T COG1103          30 TEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFLGMD--------EVRV--TAGAREAKFAV--MHALC   97 (382)
T ss_pred             CHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHhCCc--------eeee--cccchhhHHHH--HHHhc
Confidence            677777776654321111121        1223667888999997543        4444  99999999997  55567


Q ss_pred             CCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC----CCCcEEEEeCCCCCCCCCCCCHHH
Q 012238          175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA----PGGSFILLHGCAHNPTGIDPTPEQ  250 (467)
Q Consensus       175 ~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~----~~~~~~i~i~~p~NPTG~~~~~~~  250 (467)
                      .+||.|++-+.++....-+++.+|.++..+|-.....+.++++...+.+++.    ...+.+.+++++.---|   +..+
T Consensus        98 ~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YG---Nl~D  174 (382)
T COG1103          98 KEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYG---NLAD  174 (382)
T ss_pred             cCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcC---Cchh
Confidence            7999999988776655567789999999999755557889999988887652    23466777776664444   4566


Q ss_pred             HHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhh
Q 012238          251 WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCC  330 (467)
Q Consensus       251 l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~  330 (467)
                      -++++++|+++|+.++...+|.--...   ...      .+. ...++++|-.|.++.. -.+|.+.   -.+++.+.  
T Consensus       175 akkva~ic~e~gvPlllN~AYt~Grmp---vs~------ke~-g~DFiVgSGHKsmAAs-~PiGvl~---~~eE~ae~--  238 (382)
T COG1103         175 AKKVAKICREYGVPLLLNCAYTVGRMP---VSG------KEI-GADFIVGSGHKSMAAS-APIGVLA---MSEEWAEI--  238 (382)
T ss_pred             hHHHHHHHHHcCCceEeecceeecccc---ccc------ccc-CCCEEEecCccchhcc-CCeeEEe---ehhHHHHH--
Confidence            779999999999999999998633211   111      011 2357799999999854 4688884   56677665  


Q ss_pred             hhhHHHHHHHHHh---hccCccCCCchHHHHHHHHHhCChhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-CC
Q 012238          331 EVAVIQVKSQLKR---LARPMYSNPPVHGARIVANVVGNPALF---DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS-GK  403 (467)
Q Consensus       331 ~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~L~~~~~~---~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~-~~  403 (467)
                            +...-.+   ....-..+....+..++...-+-+...   ..|.+++++.+-...+.-+  ..++. ++|. |+
T Consensus       239 ------V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eRVkrWdeEv~kaR~fv~elEk--igg~~-qlG~rPk  309 (382)
T COG1103         239 ------VLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERVKRWDEEVEKARWFVAELEK--IGGVK-QLGERPK  309 (382)
T ss_pred             ------HHhhcccccccceeeeecccccCchHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHH-HhCCCCc
Confidence                  2221100   001111223333333443333334332   2344444444333333222  12223 3332 11


Q ss_pred             Ccccc-------------cCCcceEEecCCCHHHHHHHHHcccEEE-eCCC----eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          404 DWSFI-------------LRQIGMFSFTGLNKAQSDNMTNKWHVYM-TKDG----RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       404 ~~~~~-------------~~~~g~f~~~~l~~~~~~~ll~~~gI~v-~~gg----Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                      .-+..             .+.+|||         +-+-|++.||.- .||-    .+|..+++.|+++++++++++++++
T Consensus       310 ~HdLm~Fetp~f~eIakk~~r~gyF---------lY~ELK~RgI~GI~~G~Tk~~K~svyGl~~Eqve~V~~afkeI~ek  380 (382)
T COG1103         310 NHDLMKFETPVFHEIAKKHKRKGYF---------LYEELKKRGIHGIQPGQTKYFKLSVYGLSWEQVEYVVDAFKEIAEK  380 (382)
T ss_pred             ccceeeecCchHHHHHHhCcCCcee---------eHHHHHhcCccccccCceeEEEEEeecCCHHHHHHHHHHHHHHHHh
Confidence            10000             1122222         233445568764 4443    7788788999999999999999887


Q ss_pred             c
Q 012238          466 V  466 (467)
Q Consensus       466 ~  466 (467)
                      .
T Consensus       381 y  381 (382)
T COG1103         381 Y  381 (382)
T ss_pred             c
Confidence            5

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.49  E-value=5.3e-13  Score=127.49  Aligned_cols=200  Identities=19%  Similarity=0.073  Sum_probs=140.7

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEE
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI  182 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv  182 (467)
                      .|.+.+++.+.. .+. ..|.......++++.+++++...        ..++  +.+||.+..++  +...+.|++.|++
T Consensus         8 ~~~m~~a~~~a~-~gd-~~Yg~D~~~~~l~~~i~~l~g~e--------~a~f--~~sGT~An~~a--l~~~~~~~~~vi~   73 (290)
T PF01212_consen    8 TPAMLEAMAAAN-VGD-DAYGEDPTTARLEERIAELFGKE--------AALF--VPSGTMANQLA--LRAHLRPGESVIC   73 (290)
T ss_dssp             -HHEEHHHHHTT-SB--CCTTSSHHHHHHHHHHHHHHTSS--------EEEE--ESSHHHHHHHH--HHHHHHTTEEEEE
T ss_pred             CHHHHHHHHccc-cCC-cccCCChhHHHHHHHHHHHcCCC--------EEEE--eCCCChHHHHH--HHHHHhcCCceec
Confidence            677888885543 343 36998899999999999996542        3445  78999999998  4444579999999


Q ss_pred             cCCCCcc---hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc---CCCCcEEEEeCCCCCCC-CCCCCHHHHHHHH
Q 012238          183 SSPTWGN---HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFILLHGCAHNPT-GIDPTPEQWEKIA  255 (467)
Q Consensus       183 ~~P~y~~---~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~~~~i~i~~p~NPT-G~~~~~~~l~~l~  255 (467)
                      ..+++..   ........|++++.++..  +++.+|++++++.+..   +..++.+|.+.+++|-. |++++.+++++|.
T Consensus        74 ~~~aHi~~~E~ga~~~~~G~~~~~l~~~--~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~  151 (290)
T PF01212_consen   74 ADTAHIHFDETGAIEELSGAKLIPLPSD--DDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAIS  151 (290)
T ss_dssp             ETTEHHHHSSTTHHHHHTTCEEEEEBEC--TGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHH
T ss_pred             cccceeeeeccchhhHhcCcEEEECCCc--ccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHH
Confidence            9987642   222335689999999873  2367999999999986   23578899999999875 8899999999999


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhh
Q 012238          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       256 ~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                      ++|++||+.++.|.+--.-...   .....++.+..  .-..+..|++|.+++++   |.++  +.++++++.
T Consensus       152 ~~a~~~gl~lhmDGARl~~a~~---~~~~~~~e~~~--~~D~v~~~~tK~~g~~~---Gavl--~~~~~~i~~  214 (290)
T PF01212_consen  152 ELAREHGLPLHMDGARLANAAA---ALGVSLAEIAA--GADSVSFGGTKNGGAPG---GAVL--AGNKEFIAK  214 (290)
T ss_dssp             HHHHHHT-EEEEEETTHHHHHC---HHHHHHHHHHT--TSSEEEEETTSTT-SSS---EEEE--EESHHHHHH
T ss_pred             HHHHhCceEEEEehhhHHHhhh---cccccHHHHhh--hCCEEEEEEEccccccc---ceEE--EechHHHHH
Confidence            9999999999999983221110   01113333332  23466778999999775   7775  588887766

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.48  E-value=4.7e-11  Score=120.86  Aligned_cols=341  Identities=10%  Similarity=0.004  Sum_probs=183.7

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +...||+..|..-..-|.  -.|.|.+++.+.++......+.  .-..+.+..+++.|......  .-+.+.+  +++|+
T Consensus        42 G~~ylD~~~g~~~~~lGh--~~p~i~~Ai~~q~~~~~~~~~~--~~~~~~~~~la~~L~~~~p~--~~~~v~f--~~SGs  113 (428)
T PRK07986         42 GRRLVDGMSSWWAAIHGY--NHPQLNAAMKSQIDAMSHVMFG--GITHPPAIELCRKLVAMTPQ--PLECVFL--ADSGS  113 (428)
T ss_pred             CCEEEEcchhHHhhcCCC--CCHHHHHHHHHHHhhcCCcccc--ccCCHHHHHHHHHHHhhCCC--CcCEEEE--eCCcH
Confidence            457899988753112232  3578888888877542111110  00112334445444332211  1257888  99999


Q ss_pred             hHHHHHHHHHHHh-----CCCCEEEEcCCCCcchHHHH-hhCCC-------------CeEEeeeecCC---CC-CCChhh
Q 012238          162 GSLRLAAALIERY-----FPGAKVLISSPTWGNHKNIF-NDARV-------------PWSEYRYYDPK---TV-GLDFEG  218 (467)
Q Consensus       162 ~al~l~~~~l~~~-----~~gd~Vlv~~P~y~~~~~~~-~~~G~-------------~~~~v~~~~~~---~~-~~d~~~  218 (467)
                      +|.+.+.++....     ....+|+....+|.+..... ...|-             .+..++.....   .+ .-|++.
T Consensus       114 EAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~  193 (428)
T PRK07986        114 VAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAP  193 (428)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHH
Confidence            9999986655444     12358999999887643221 11111             11222221000   00 125677


Q ss_pred             HHHHHHcCCCCcEEEEeCC-CCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012238          219 MIADIKAAPGGSFILLHGC-AHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (467)
Q Consensus       219 l~~~l~~~~~~~~~i~i~~-p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~  296 (467)
                      +++.++..+.+..++++-. .+.-.|. .++++.+++|.++|++||+++|+||+..++...+   ..+.. ....-.+++
T Consensus       194 l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG---~~fa~-~~~gv~PDi  269 (428)
T PRK07986        194 FARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTG---KLFAC-EHAGIAPDI  269 (428)
T ss_pred             HHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCC---Ceeee-cccCCCCCE
Confidence            8888865444555555544 2444465 4567899999999999999999999987763221   11111 111112333


Q ss_pred             EEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh-----ccCccCCCchHHHHHHHHHhCChhhH
Q 012238          297 LVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL-----ARPMYSNPPVHGARIVANVVGNPALF  370 (467)
Q Consensus       297 i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~L~~~~~~  370 (467)
                      +   .++|.++ .| +.+|.++   .++++.+.            +...     ....+.+.++++..++...|+.  + 
T Consensus       270 ~---t~gK~l~-gG~~p~~av~---~~~~i~~~------------~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~--i-  327 (428)
T PRK07986        270 L---CLGKALT-GGTMTLSATL---TTREVAET------------ISNGEAGCFMHGPTFMGNPLACAVANASLSL--L-  327 (428)
T ss_pred             E---Eechhhh-CCcccCcchh---chHHHHHH------------hhcCCCCccccCCCCCcCHHHHHHHHHHHHH--H-
Confidence            4   4899997 67 4777773   67777776            4321     1112223445555555544431  1 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceEEecCC----CHHH-HHHHHHcccEEEeCCC---e
Q 012238          371 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL----NKAQ-SDNMTNKWHVYMTKDG---R  441 (467)
Q Consensus       371 ~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~~~~l----~~~~-~~~ll~~~gI~v~~gg---R  441 (467)
                         ++  ++..++.+++-+++.+.|+ ++. .+. +..+... |.++-+.+    .... .+.++ ++||++.+.|   |
T Consensus       328 ---~~--~~~~~~~~~~g~~l~~~l~-~l~~~~~-i~~vRg~-Gl~~~ve~~~~~~~~~~~~~l~-~~Gl~~~~~g~~i~  398 (428)
T PRK07986        328 ---ES--GDWQQQVAAIEAQLREELA-PLRDAPM-VADVRVL-GAIGVVETTRPVNMAALQRFFV-EQGVWIRPFGKLIY  398 (428)
T ss_pred             ---Hh--CCHHHHHHHHHHHHHHHHH-HHhcCCC-EEeEecc-ceEEEEEeCCcccHHHHHHHHH-HCCcEEEecCCEEE
Confidence               11  1234455555555566665 431 110 1112222 33322212    2233 44554 4699999877   6


Q ss_pred             EEec-cCChhhHHHHHHHHHHHHHh
Q 012238          442 ISLA-GLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       442 is~~-~~~~~~i~~~~~~l~~~l~~  465 (467)
                      +.-. .++++++++++++|.+++++
T Consensus       399 ~~Ppl~it~~ei~~~~~~l~~~l~~  423 (428)
T PRK07986        399 LMPPYIILPEQLQRLTAAVNRAVQD  423 (428)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            6432 23889999999999999864

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.47  E-value=1.5e-10  Score=117.28  Aligned_cols=341  Identities=11%  Similarity=0.015  Sum_probs=186.1

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +...+|+..|.--..-|.  -.|.|.+++.+.++....  ..+.......+|-+.+++.+-.      .-+++.+  +++
T Consensus        43 G~~ylD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~------~~~~v~f--~~s  112 (429)
T PRK06173         43 GRRLIDGMSSWWAALHGY--NHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPP------SLNKIFF--ADS  112 (429)
T ss_pred             CCEEEEccchHHhccCCC--CCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCC------CcCEEEE--eCC
Confidence            457899987743111122  257788888877754211  1111233334444555544211      1358888  999


Q ss_pred             chhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHH-HHhhCCC-------------CeEEeeeecCCCCC-----C
Q 012238          160 GTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKN-IFNDARV-------------PWSEYRYYDPKTVG-----L  214 (467)
Q Consensus       160 gt~al~l~~~~l~~~~-----~g-d~Vlv~~P~y~~~~~-~~~~~G~-------------~~~~v~~~~~~~~~-----~  214 (467)
                      |++|.+.+.++.....     +| .+|+....+|.+... .+...|-             .+..+|.... .+.     -
T Consensus       113 GseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~  191 (429)
T PRK06173        113 GSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSI-KFGEEWNDE  191 (429)
T ss_pred             chHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCc-ccchhHHHH
Confidence            9999999866544431     33 578888888876421 1111110             1122222100 000     1


Q ss_pred             ChhhHHHHHHcCCCCcEEEEeCCC-CCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc
Q 012238          215 DFEGMIADIKAAPGGSFILLHGCA-HNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR  292 (467)
Q Consensus       215 d~~~l~~~l~~~~~~~~~i~i~~p-~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~  292 (467)
                      +++.+++.+...+.+...+++... +.-.|.. ++++.+++|.++|++||+++|+||+..++.-.+   ..+... ...-
T Consensus       192 ~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG---~~~a~~-~~gv  267 (429)
T PRK06173        192 AIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTG---KLFALE-HAGV  267 (429)
T ss_pred             HHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCC---cchHHH-hcCC
Confidence            356677777654455666665542 6666765 688899999999999999999999987763221   121121 1122


Q ss_pred             CCeEEEEecCccCcccCCC-ccceEEEecCCHHHHhhhhhhhHHHHHHHHHh-----hccCccCCCchHHHHHHHHHhCC
Q 012238          293 GMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKR-----LARPMYSNPPVHGARIVANVVGN  366 (467)
Q Consensus       293 ~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~L~~  366 (467)
                      .++++ +  |+|.++ .|. -++.++   ..+++.+.            +..     .....+...++++..++...|+-
T Consensus       268 ~PDiv-~--~gK~l~-gG~~p~~a~~---~~~~i~~~------------~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~  328 (429)
T PRK06173        268 VPDIM-C--IGKALT-GGYLTLSATI---TTEAIAQT------------ICSGEAKCFMHGPTFMANPLACAIAAESIRL  328 (429)
T ss_pred             CCCEE-E--eehhhh-CCccccceEE---ecHHHHHH------------HhcCCCCccccCCCCCcCHHHHHHHHHHHHH
Confidence            23433 3  899997 673 567764   66776665            321     11111223344555555544421


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCcccccCCcceE-EecCC--CHHHHHHHHHcccEEEeCCC--
Q 012238          367 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFILRQIGMF-SFTGL--NKAQSDNMTNKWHVYMTKDG--  440 (467)
Q Consensus       367 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~-g~~~~~~~~~~~~g~f-~~~~l--~~~~~~~ll~~~gI~v~~gg--  440 (467)
                        +    ++  +...++++++-++|.+.|+ ++ +.+. +..+...|-+. +.++-  ....+.+.+.++||++.+.|  
T Consensus       329 --i----~~--~~~~~~~~~~g~~l~~~L~-~~~~~~~-v~~vRg~Gl~~~iel~~~~~~~~i~~~l~e~Gi~v~~~g~~  398 (429)
T PRK06173        329 --L----LE--SPWQQNIQRIEAQLKQELA-PAAEFDS-VAEVRVLGAIGVVEMKEPVNMATLQPRFVEHGIWVRPFGKL  398 (429)
T ss_pred             --H----Hh--CCHHHHHHHHHHHHHHHHH-HhhcCCC-eeeeeccceEEEEEeCCcccHHHHHHHHHHCCeEEEecCCE
Confidence              1    11  1234555556666666666 43 2110 11112233222 11221  22333333444699999876  


Q ss_pred             -eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          441 -RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 -Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                       ||.-. .++++++++++++|.+++.++
T Consensus       399 l~~~Ppl~it~~ei~~~~~~l~~~l~~~  426 (429)
T PRK06173        399 VYIMPPFIISPDELSQLTSGLLRVLKQE  426 (429)
T ss_pred             EEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence             77643 248899999999999998764

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.47  E-value=1.6e-10  Score=117.94  Aligned_cols=340  Identities=10%  Similarity=-0.001  Sum_probs=186.4

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC---CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN---KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~---~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      +.+.||+..|..-..-|.  -.|.|.+++.+.++....   ..| +..-..+|-+.+++..    +..  -+++.+  ++
T Consensus        53 G~~ylD~~~g~~~~~lGh--~~p~v~~Ai~~ql~~~~~~~~~~~-~~~~~~~lAe~L~~~~----p~~--~~~v~f--~~  121 (453)
T PRK06943         53 GRRYLDAISSWWVNLFGH--ANPRINAALKDQLDTLEHAMLAGC-THEPAIELAERLAALT----GGT--LGHAFF--AS  121 (453)
T ss_pred             CCEEEEcchHHHHhcCCC--CCHHHHHHHHHHHHhcCCcccccc-CCHHHHHHHHHHHHhC----CCC--CCEEEE--eC
Confidence            457899987743122233  367888888887754210   112 2222233444444432    111  147888  99


Q ss_pred             CchhHHHHHHHHHHHh-----CC-CCEEEEcCCCCcchHH-HHhhCCC------------CeEEeeeecCCC--CC----
Q 012238          159 SGTGSLRLAAALIERY-----FP-GAKVLISSPTWGNHKN-IFNDARV------------PWSEYRYYDPKT--VG----  213 (467)
Q Consensus       159 ggt~al~l~~~~l~~~-----~~-gd~Vlv~~P~y~~~~~-~~~~~G~------------~~~~v~~~~~~~--~~----  213 (467)
                      +|++|.+.+.++....     .+ ..+|+...-+|..... .+...|-            .+..++..+...  ..    
T Consensus       122 sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  201 (453)
T PRK06943        122 DGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAA  201 (453)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHH
Confidence            9999999985554222     12 3589999988876532 1211110            122232211100  00    


Q ss_pred             ----CChhhHHHHHHcCCCCcEEEEeCC-CCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012238          214 ----LDFEGMIADIKAAPGGSFILLHGC-AHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR  287 (467)
Q Consensus       214 ----~d~~~l~~~l~~~~~~~~~i~i~~-p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~  287 (467)
                          -+++.+++.+...+++...+++-. .+.-.|. .++.+.++++.++|++||+++|.||+..+|.-.+   ..+.. 
T Consensus       202 ~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG---~~fa~-  277 (453)
T PRK06943        202 DVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTG---TFFAC-  277 (453)
T ss_pred             HHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCc---chhHH-
Confidence                134677777765445556666554 2555666 4678889999999999999999999988884221   12222 


Q ss_pred             HHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHh------hccCccCCCchHHHHHH
Q 012238          288 LFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKR------LARPMYSNPPVHGARIV  360 (467)
Q Consensus       288 ~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~  360 (467)
                      ....-.++++++   +|.++ .| +.+|.++   ..+++.+.            +..      .....+.+.+.++..++
T Consensus       278 ~~~gv~PDivt~---gKgl~-gG~~Pi~av~---~~~ei~~~------------~~~~~~~~~~~~~~T~~gnpl~~aaa  338 (453)
T PRK06943        278 EQAGVWPDFLCL---SKGIS-GGYLPLSLVL---SRDAIFAA------------FYDDDVTRGFLHSHSYTGNPLACRAA  338 (453)
T ss_pred             HhCCCCCCeEee---ehhhc-cCcccceEEE---EcHHHHHh------------hcccCccCCccCCCCCCCCHHHHHHH
Confidence            112223455543   89998 78 5889885   67777665            321      01112333455555555


Q ss_pred             HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceEE-ec--CCC------HHHHHHHHH
Q 012238          361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFS-FT--GLN------KAQSDNMTN  430 (467)
Q Consensus       361 ~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~-~~--~l~------~~~~~~ll~  430 (467)
                      .+.|+-  +    ++  +...++.+++-+++.+.|+ ++. .+. +..+...|-++. .+  +.+      ..+...+++
T Consensus       339 ~a~L~~--i----~~--~~l~~~~~~~G~~l~~~L~-~l~~~~~-v~~vrG~Gl~~gvel~~~~~~~~~~~~~i~~~~~~  408 (453)
T PRK06943        339 LATLDL--F----AE--DDVLARNARKSARLRAALA-PLAAHPQ-VRHLRQRGTIFAFDVALDGDAARTFSRRFFEAALE  408 (453)
T ss_pred             HHHHHH--H----Hh--cCHHHHHHHHHHHHHHHHH-HHhcCCC-EEeEeccccEEEEEEccCCCcchHHHHHHHHHHHH
Confidence            555431  1    10  1233444444555555555 431 111 222333333321 11  111      123445554


Q ss_pred             cccEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          431 KWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       431 ~~gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                       +||++.+.|   ||+.. .++++++++++++|.++++++
T Consensus       409 -~Gll~~~~g~~l~~~Ppl~it~~eid~~~~~l~~al~~~  447 (453)
T PRK06943        409 -RELLLRPIGTTVYLMPPYVLDDDEIAWLAERTRATLDAT  447 (453)
T ss_pred             -CCcEEEecCCEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence             699998866   77622 238899999999999998764

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.47  E-value=2.3e-10  Score=116.83  Aligned_cols=338  Identities=12%  Similarity=0.042  Sum_probs=181.9

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +...||+..|..-..-|.  -.|.|.+++.+.++...  ...|.+.....+|-+.+++....      ..+++.+  +++
T Consensus        52 G~~ylD~~~g~~~~~lGh--~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~------~~~~v~f--~~S  121 (457)
T PRK05639         52 GNVFIDFLAGAAAASTGY--SHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPI------ENPKVLF--GLS  121 (457)
T ss_pred             CCEEEECCcCHHhhccCC--CCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCCC------CcCEEEE--eCc
Confidence            457899988753222233  36778888888775421  11232323333455555554211      1257888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-HhhCC--------C-----CeEEeeeecCCC--CC----CChh--
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-FNDAR--------V-----PWSEYRYYDPKT--VG----LDFE--  217 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~-~~~~G--------~-----~~~~v~~~~~~~--~~----~d~~--  217 (467)
                      |++|.+.+.++........+|+....+|.+.... +...|        .     .++.+|..+...  +.    .|.+  
T Consensus       122 GsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  201 (457)
T PRK05639        122 GSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDEL  201 (457)
T ss_pred             hHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHH
Confidence            9999999866654444446888888888764432 22111        1     123333311100  00    1222  


Q ss_pred             ------hHHHHHHc---CCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012238          218 ------GMIADIKA---APGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR  287 (467)
Q Consensus       218 ------~l~~~l~~---~~~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~  287 (467)
                            .+++.+..   .+.+...+++-..+-..|. ..+.+-+++|.++|++||+++|+||+..+|.-.+   ..+.. 
T Consensus       202 ~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG---~~~a~-  277 (457)
T PRK05639        202 INRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTG---KWFAS-  277 (457)
T ss_pred             HHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCc---hHHHH-
Confidence                  34443321   1345666666666655676 4568889999999999999999999988764221   11122 


Q ss_pred             HHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCCh
Q 012238          288 LFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNP  367 (467)
Q Consensus       288 ~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~  367 (467)
                      ....-.+++++   |+|.++ .|+.+|+++   ..+++.+.            ...... .+.+.+.++..++.+.|+- 
T Consensus       278 ~~~gv~PDiv~---~gK~l~-gG~pi~av~---~~~~i~~~------------~~~~~~-~T~~g~p~~~aaa~a~l~~-  336 (457)
T PRK05639        278 EWFEVKPDLII---FGKGVA-SGMGLSGVI---GRKELMDL------------TSGSAL-LTPAANPVISAAAEATLEI-  336 (457)
T ss_pred             HhcCCCCCEEE---echhhc-CCCcceeEE---ehHHHHhh------------cCCCcc-cCCCcCHHHHHHHHHHHHH-
Confidence            11122334444   799998 688888885   66665543            211111 1223444444454444431 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----cCCCCCcccccCCcceEE--ecC-C---C----HHHHHHHHHccc
Q 012238          368 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK----DKSGKDWSFILRQIGMFS--FTG-L---N----KAQSDNMTNKWH  433 (467)
Q Consensus       368 ~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~----~g~~~~~~~~~~~~g~f~--~~~-l---~----~~~~~~ll~~~g  433 (467)
                       +.+      +...++.+++-++|.+.|+ +    .++   ...+...|.++-  +.. .   +    ..+.+.+++ +|
T Consensus       337 -l~~------~~l~~~~~~~g~~l~~~L~-~l~~~~~~---~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~-~G  404 (457)
T PRK05639        337 -IEE------ENLLKNALKVGEFIKKRLL-EMKESFEV---IGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFE-LG  404 (457)
T ss_pred             -HHH------ccHHHHHHHHHHHHHHHHH-HHHHhCCC---EEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHh-CC
Confidence             100      1222333334444444444 3    222   112233333321  111 0   1    123445555 69


Q ss_pred             EEEeCCC------eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          434 VYMTKDG------RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       434 I~v~~gg------Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +++.+.|      ||... .++++++++++++|.++++.+
T Consensus       405 v~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~  444 (457)
T PRK05639        405 LILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIKDA  444 (457)
T ss_pred             eEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence            9997743      55533 248899999999999998653

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.46  E-value=2.5e-11  Score=114.46  Aligned_cols=166  Identities=19%  Similarity=0.124  Sum_probs=128.9

Q ss_pred             CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcch----HHHHhhCCCC
Q 012238          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH----KNIFNDARVP  200 (467)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~----~~~~~~~G~~  200 (467)
                      .+-...|.+.+|.+-.+          +..+.+.+|+.|+..+  ++....+||.|+..+--|.+.    ...++.+|++
T Consensus        61 NPT~~vlE~RiAaLEGG----------~aa~a~aSG~AA~~~a--i~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~  128 (426)
T COG2873          61 NPTTDVLEERIAALEGG----------VAALAVASGQAAITYA--ILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIE  128 (426)
T ss_pred             CchHHHHHHHHHHhhcc----------hhhhhhccchHHHHHH--HHHhccCCCeeEeeccccCchHHHHHHHHHhcCcE
Confidence            44577899999999433          3333369999999998  777888999999998777654    4456789999


Q ss_pred             eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012238          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (467)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~  280 (467)
                      +..++-       .|++.++++++   ++++++++-+-.||.+.+.+.+   +|+++|+++|+++|+|..+..-.     
T Consensus       129 v~fvd~-------~d~~~~~~aI~---~nTkavf~EtigNP~~~v~Die---~ia~iAh~~gvpliVDNT~atpy-----  190 (426)
T COG2873         129 VRFVDP-------DDPENFEAAID---ENTKAVFAETIGNPGLDVLDIE---AIAEIAHRHGVPLIVDNTFATPY-----  190 (426)
T ss_pred             EEEeCC-------CCHHHHHHHhC---cccceEEEEeccCCCccccCHH---HHHHHHHHcCCcEEEecCCCcce-----
Confidence            998864       47899999998   7999999999999999988765   78888999999999999955321     


Q ss_pred             CChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHH
Q 012238          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLA  326 (467)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~  326 (467)
                          -++++ +. .-.|++.|.||.+|-.|--+|.+++-++.-++.
T Consensus       191 ----l~rP~-~h-GADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~  230 (426)
T COG2873         191 ----LCRPI-EH-GADIVVHSATKYIGGHGTAIGGVIVDGGKFDWT  230 (426)
T ss_pred             ----ecchh-hc-CCCEEEEeecccccCCccccceEEEeCCccccc
Confidence                11111 22 245889999999999999999998655554433

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.45  E-value=5.7e-11  Score=129.25  Aligned_cols=298  Identities=10%  Similarity=0.009  Sum_probs=178.3

Q ss_pred             hHHHHHHHHHHHhCCCCcccccCceeeeecCCch----hHHHHHHHHHHHhCC-CC----EEEEcCCCCcchHHHHhhCC
Q 012238          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT----GSLRLAAALIERYFP-GA----KVLISSPTWGNHKNIFNDAR  198 (467)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt----~al~l~~~~l~~~~~-gd----~Vlv~~P~y~~~~~~~~~~G  198 (467)
                      +.++|+.++++++.        ++|.+  +.+++    .++.++  +.....+ ||    .|+++...+......+...|
T Consensus       570 ~~~~r~~la~i~g~--------~~v~f--~pnaga~ge~a~~~v--i~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G  637 (993)
T PLN02414        570 FEDLGDLLCEITGF--------DSFSL--QPNAGAAGEYAGLMV--IRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCG  637 (993)
T ss_pred             HHHHHHHHHHHhCC--------CeEEE--cCCCcHHHHHHHHHH--HHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCC
Confidence            45677777777532        57888  77777    677776  3333444 88    89999999888888888899


Q ss_pred             CCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCC
Q 012238          199 VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS  278 (467)
Q Consensus       199 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~  278 (467)
                      ++++.++++  .++.+|+++|++.+++..+++++|++++|+|-+|...+   +++|+++|+++|.++++|.+.. .....
T Consensus       638 ~~vv~v~~d--~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Galv~vDgAq~-~a~~~  711 (993)
T PLN02414        638 MKIVVVGTD--AKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG---IDEICDIIHDNGGQVYMDGANM-NAQVG  711 (993)
T ss_pred             CEEEEeccC--CCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccch---HHHHHHHHHHcCCEEEEEecCH-HhccC
Confidence            999999983  45689999999999854457889999999999998655   5577888999999999999942 22111


Q ss_pred             CCCChhHHHHHHhcCCeEEEEecCccCcccC----CCccceEEEecCCHHHHhh-hhhhhHHHHHHHHHhhccC--ccCC
Q 012238          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLY----AERIGAMNVVCSSSDLAAR-CCEVAVIQVKSQLKRLARP--MYSN  351 (467)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----G~RiG~~~~v~~~~~~~~~-~~~~~~~~~~~~l~~~~~~--~~~~  351 (467)
                      + .+.       ....-.++.+|..|.|+.|    |-.+|.+.   ..+.+... -.++ .+.-.....+....  ....
T Consensus       712 l-~~p-------~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~---~~~~L~p~lPg~~-v~~~~~~~~r~~~s~iGt~~  779 (993)
T PLN02414        712 L-TSP-------GFIGADVCHLNLHKTFCIPHGGGGPGMGPIG---VKKHLAPFLPSHP-VVPTGGIPRPEKTQPLGTIS  779 (993)
T ss_pred             c-CCc-------cccCCCEEEecCCccCCcCcccCCCCeeeEE---EchhhcccCCCCc-cccCCCcccccCCCCcCCcc
Confidence            0 000       1113457788899966522    33468874   44444433 0000 00000000000000  0111


Q ss_pred             CchHHHH----HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceE---E--ecC---
Q 012238          352 PPVHGAR----IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF---S--FTG---  419 (467)
Q Consensus       352 ~~~~~~~----~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f---~--~~~---  419 (467)
                      ...+++.    ++...+..     .-.+.+++..++...+.+++.+.|.+..+    ..+..+.+.+|   +  +..   
T Consensus       780 ~a~~g~al~l~~A~~yi~~-----lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~----~~~~~~~~~~~hEfv~~~~~l~~  850 (993)
T PLN02414        780 AAPWGSALILPISYTYIAM-----MGSEGLTDASKIAILNANYMAKRLEGHYP----VLFRGKNGTCAHEFIIDLRPFKN  850 (993)
T ss_pred             chhhhhHHHHHHHHHHHHH-----HCHhHHHHHHHHHHHHHHHHHHHHHhhCC----ccccCCCCCeeeeEEEecccccc
Confidence            1122111    11111111     01244667777788888899998872222    23333333211   1  111   


Q ss_pred             ---CC-HHHHHHHHHcccEEEe----CC--C-eEEeccC-ChhhHHHHHHHHHHHHHh
Q 012238          420 ---LN-KAQSDNMTNKWHVYMT----KD--G-RISLAGL-SLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       420 ---l~-~~~~~~ll~~~gI~v~----~g--g-Ris~~~~-~~~~i~~~~~~l~~~l~~  465 (467)
                         .+ .+..++|+ ++||...    |.  . ||+.+.. +++++++++++++.+..+
T Consensus       851 ~~g~~~~di~krL~-d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e  907 (993)
T PLN02414        851 TAGIEPEDVAKRLM-DYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREE  907 (993)
T ss_pred             ccCCCHHHHHHHHH-HcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence               23 34466666 6788642    22  2 8886643 779999999999887665

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.45  E-value=3.9e-10  Score=115.29  Aligned_cols=338  Identities=12%  Similarity=0.042  Sum_probs=181.4

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCC-cCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK-EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~-~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +.+.||+. |.....-|.  -.|.|.+++.+.++..... .+.+.....+|-+.++++....      .+.+.+  +++|
T Consensus        71 G~~ylD~~-g~~~~~lGh--~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~lae~L~~~~p~~------~~~v~f--~~sG  139 (459)
T PRK06082         71 GKKYMDFH-GNNVHQLGY--GHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGE------LNRVLF--APGG  139 (459)
T ss_pred             CCEEEEcc-cHhhcccCC--CCHHHHHHHHHHHHhCCCccCccCCHHHHHHHHHHHHhCCCC------CCEEEE--CCCc
Confidence            45789987 432111232  3677888888877542111 1112333444555555553111      257888  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-HHhhCCC------------CeEEeeeecCCC--CC-C------Chhh
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKN-IFNDARV------------PWSEYRYYDPKT--VG-L------DFEG  218 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~-~~~~~G~------------~~~~v~~~~~~~--~~-~------d~~~  218 (467)
                      ++|.+.+..+........+|+...-+|..... .+...|.            .+..+|......  +. .      +++.
T Consensus       140 seAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (459)
T PRK06082        140 TSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADY  219 (459)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHH
Confidence            99999986654444444789988888866532 2222221            112222100000  00 0      1245


Q ss_pred             HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238          219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (467)
Q Consensus       219 l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (467)
                      +++.+++. ....++++-..++-.+..++.+-+++|.++|++||+++|.||+..+|.-.+   ..+.... ..-.+++++
T Consensus       220 l~~~i~~~-~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG---~~fa~e~-~gv~PDiv~  294 (459)
T PRK06082        220 LEYVIEKE-GGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTG---EWFTHQA-YGIEPDILC  294 (459)
T ss_pred             HHHHHhcC-CCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hhhHhHh-hCCCCCEEE
Confidence            67777542 345566665555554557788899999999999999999999988764221   1122211 122334443


Q ss_pred             EecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238          299 AQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       299 ~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l  377 (467)
                         ++|.++ .| +.+|.++   ..+++...            ........+.+.+.++..++.+.|+-  +    ++  
T Consensus       295 ---~gKgl~-gG~~P~~av~---~~~~i~~~------------~~~~~~~~T~~gnpl~~aaa~a~L~~--l----~~--  347 (459)
T PRK06082        295 ---IGKGLG-GGLVPIAAMI---TKDKYNTA------------AQISLGHYTHEKSPLGCAAALATIEV--I----EQ--  347 (459)
T ss_pred             ---eccccc-CCCCcceEEE---EcHHHHhh------------ccCCCCCCCCCcCHHHHHHHHHHHHH--H----Hh--
Confidence               799998 67 4888885   55554432            21111112334455555555544431  1    11  


Q ss_pred             HHHHHHHHHHHHHHHHHhhh---ccCCCCCcccccCCcceEEe-c--CC-----C----HHHHHHHHHcccEEEeCC-C-
Q 012238          378 EMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSF-T--GL-----N----KAQSDNMTNKWHVYMTKD-G-  440 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f~~-~--~l-----~----~~~~~~ll~~~gI~v~~g-g-  440 (467)
                      +...++.+++-++|.+.|++   +.+.   +..+...|.++.+ +  +.     +    ..+...+++ +||++.+. + 
T Consensus       348 ~~l~~~~~~~g~~l~~~L~~l~~~~~~---i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~~~  423 (459)
T PRK06082        348 EGLLEKVKADSQFMRERLLEMKAKYPL---IGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLN-NGLSFKVSQGN  423 (459)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhhCCC---eeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHh-CCCEEEecCCC
Confidence            12334444444445554440   2332   1122334433311 1  11     1    122445554 69998875 3 


Q ss_pred             --eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          441 --RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 --Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                        ||+.. .+++++++++++++.+++.++
T Consensus       424 ~i~~~Ppl~it~~eid~~~~~l~~~l~~~  452 (459)
T PRK06082        424 VIQLSPPLIITREELTQALAILEEAIAKI  452 (459)
T ss_pred             EEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence              66533 348899999999999998653

>PRK06062 hypothetical protein; Provisional

Probab=99.45  E-value=1.7e-10  Score=117.84  Aligned_cols=339  Identities=11%  Similarity=0.020  Sum_probs=181.7

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.||+..|.--..-|.  -.|.|.+++.+.++....  ..| ......+|-+.+++....      .-+++.+  +++
T Consensus        52 G~~ylD~~~g~~~~~lGh--~~p~v~~Ai~~q~~~~~~~~~~~-~~~~~~~lae~L~~~~p~------~~~~v~f--~~S  120 (451)
T PRK06062         52 GRRYLDFSSQLVNTNIGH--QHPKVVAAIQEQAARLCTVAPAH-ANDARSEAARLIAERAPG------DLSKVFF--TNG  120 (451)
T ss_pred             CCEEEEcccCHHhhcCCC--CCHHHHHHHHHHHHhcCCcCCcc-CCHHHHHHHHHHHHhCCC------CCCEEEE--cCC
Confidence            458899988753112232  357788888887754221  112 222233444444443211      1258888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-hhCCC-----------CeEEeeeecCCC--CC--CC-------h
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDARV-----------PWSEYRYYDPKT--VG--LD-------F  216 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~-~~~G~-----------~~~~v~~~~~~~--~~--~d-------~  216 (467)
                      |++|.+.+.++........+|+...-+|.+..... ...|.           .+..++......  +.  -|       +
T Consensus       121 GsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  200 (451)
T PRK06062        121 GADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERAL  200 (451)
T ss_pred             hHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHH
Confidence            99999998665444433468888888887654322 22111           112221100000  10  12       5


Q ss_pred             hhHHHHHHcC-CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012238          217 EGMIADIKAA-PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (467)
Q Consensus       217 ~~l~~~l~~~-~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~  294 (467)
                      +.+++.++.. +.+...+++-.-+.-.|.+ ++.+-+++|.++|++||+++|+||+..+|.-.+   ..+.. ....-.+
T Consensus       201 ~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG---~~~a~-~~~gv~P  276 (451)
T PRK06062        201 AHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTG---KWFAI-EHFGVVP  276 (451)
T ss_pred             HHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCc---HHHHH-HhcCCCC
Confidence            6777777543 2344555655555445665 477889999999999999999999988764211   11112 1112223


Q ss_pred             eEEEEecCccCcccCCC-ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh--ccCccCCCchHHHHHHHHHhCChhhHH
Q 012238          295 ELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL--ARPMYSNPPVHGARIVANVVGNPALFD  371 (467)
Q Consensus       295 ~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~L~~~~~~~  371 (467)
                      +++   .|+|.++ .|. .+|.++   ..+++.+.            +...  ....+.+.++++..++.+.|+-  +.+
T Consensus       277 Di~---t~gK~lg-gG~~Pigav~---~~~~i~~~------------~~~~~~~~~~T~~gnpl~~Aaa~a~L~~--l~~  335 (451)
T PRK06062        277 DLI---TFAKGVN-SGYVPLGGVA---ISEAIAAT------------FADRPYPGGLTYSGHPLACAAAVATINA--MEE  335 (451)
T ss_pred             Cee---eechhhh-cCCcCcEEEE---EcHHHHHH------------hccCCCCCCCCCCCCHHHHHHHHHHHHH--HHh
Confidence            433   5799998 674 788885   66677766            3211  1222233445555555555431  100


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHhhh---ccCCCCCcccccCCcceEE-ec-CC----------------CHHHHHHHH
Q 012238          372 EWKAEMEMMAGRIKNVR-QKLFDSLSA---KDKSGKDWSFILRQIGMFS-FT-GL----------------NKAQSDNMT  429 (467)
Q Consensus       372 ~~~~~l~~~~~~~~~~r-~~l~~~l~~---~~g~~~~~~~~~~~~g~f~-~~-~l----------------~~~~~~~ll  429 (467)
                            +...++.++.- +++.+.|++   +.+.   ...+...|-++- .+ .-                ...+...++
T Consensus       336 ------~~l~~~~~~~G~~~l~~~L~~l~~~~~~---v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  406 (451)
T PRK06062        336 ------EGIVENAARIGAEVLGPGLRELAERHPS---VGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACK  406 (451)
T ss_pred             ------cCHHHHHHHHHHHHHHHHHHHHHhcCCc---EEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHH
Confidence                  01223333332 234444430   2221   111223333221 11 10                012344555


Q ss_pred             HcccEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          430 NKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       430 ~~~gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                       ++||++.+.+   ||+.. .+++++++++++++.++++.+
T Consensus       407 -~~Gvl~~~~~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~  446 (451)
T PRK06062        407 -ERGLLPFVNGNRIHVVPPCTVTEDEVREGLAILDAALAVA  446 (451)
T ss_pred             -HCCcEEeecCCEEEEECCccCCHHHHHHHHHHHHHHHHHh
Confidence             4699987654   66653 248899999999999998765

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.45  E-value=2.3e-10  Score=116.15  Aligned_cols=340  Identities=9%  Similarity=0.009  Sum_probs=183.8

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.|||..|..-..-|  .-+|.+.+++.+.++...  ...+.......++-+.+++.....      -+++.+  +++
T Consensus        44 G~~ylD~~~g~~~~~lG--h~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~------~~~v~f--~~s  113 (427)
T TIGR00508        44 GRRLIDGMSSWWAAIHG--YNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNA------LDCVFL--ADS  113 (427)
T ss_pred             CCEEEEccchHHHhcCC--CCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCC------CCEEEE--eCC
Confidence            45799998775211113  236778888888775421  111112223344445555542111      258888  999


Q ss_pred             chhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHHHHh-hCCCC-------------eEEeeeecCCCCC-----C
Q 012238          160 GTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKNIFN-DARVP-------------WSEYRYYDPKTVG-----L  214 (467)
Q Consensus       160 gt~al~l~~~~l~~~~-----~g-d~Vlv~~P~y~~~~~~~~-~~G~~-------------~~~v~~~~~~~~~-----~  214 (467)
                      |++|.+.+..+.....     +| .+|+...-+|......+- ..|-.             +..++.. ...+.     .
T Consensus       114 GseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~  192 (427)
T TIGR00508       114 GSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAP-QNRFDEEWNEE  192 (427)
T ss_pred             cHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCC-CccccchhHHH
Confidence            9999998855543331     23 579999988876533222 11211             1111110 00111     1


Q ss_pred             ChhhHHHHHHcCCCCcEEEEeCCC-CCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc
Q 012238          215 DFEGMIADIKAAPGGSFILLHGCA-HNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR  292 (467)
Q Consensus       215 d~~~l~~~l~~~~~~~~~i~i~~p-~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~  292 (467)
                      |++.+++.+.....+..+|++... ++-.|. .++.+.+++|.++|++||+++|+||++.++...+   ..+.. .....
T Consensus       193 ~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G---~~~~~-~~~~v  268 (427)
T TIGR00508       193 AITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTG---KLFAC-EHAGV  268 (427)
T ss_pred             HHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC---ccchh-hhcCC
Confidence            466777777654344455554442 555555 4478999999999999999999999987764321   11111 11122


Q ss_pred             CCeEEEEecCccCcccCCC-ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc-----cCccCCCchHHHHHHHHHhCC
Q 012238          293 GMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA-----RPMYSNPPVHGARIVANVVGN  366 (467)
Q Consensus       293 ~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~L~~  366 (467)
                      .+++++   ++|.++ .|+ -++.+   +..+++.+.            +....     ...+...+.++..++.+.|+.
T Consensus       269 ~pDi~~---~gK~l~-gG~~p~~a~---~~~~~~~~~------------~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~  329 (427)
T TIGR00508       269 VPDILC---VGKALT-GGYMTLSAT---VTTDKVAQT------------ISSGEAGCFMHGPTFMGNPLACAVAEASLAI  329 (427)
T ss_pred             CCCEEE---echhhh-cCcccceEE---EEcHHHHHH------------HhcCCCCccccCCCCCcCHHHHHHHHHHHHH
Confidence            234343   799996 674 45655   367777665            43210     111112344555555544431


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceE-EecC--CC-HHHHHHHHHcccEEEeCCC--
Q 012238          367 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF-SFTG--LN-KAQSDNMTNKWHVYMTKDG--  440 (467)
Q Consensus       367 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f-~~~~--l~-~~~~~~ll~~~gI~v~~gg--  440 (467)
                        +    ++  +...++.+++-++|.+.|+ +++....+......|.++ +.+.  .. ..+..++++ +||++.+.|  
T Consensus       330 --l----~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~  399 (427)
T TIGR00508       330 --L----LE--GEWQKQVSAIENQLKRELS-PLRKNPVVKDVRVLGAIGVVEMYKPVNVEELQKKFVE-QGVWIRPFGKL  399 (427)
T ss_pred             --H----Hh--CCHHHHHHHHHHHHHHHHH-HhhcCCCEEeEeccccEEEEEECCccCHHHHHHHHHH-CCeEEEecCCE
Confidence              1    11  1234556666666777776 553100011111223322 1111  12 234555555 599998776  


Q ss_pred             -eEEec-cCChhhHHHHHHHHHHHHHh
Q 012238          441 -RISLA-GLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       441 -Ris~~-~~~~~~i~~~~~~l~~~l~~  465 (467)
                       |++.. ..++++++++++++.+++.+
T Consensus       400 l~~~ppl~~t~~~id~~~~~l~~~l~~  426 (427)
T TIGR00508       400 IYVMPPYIITTEQLQKLTAALIEALHE  426 (427)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence             66654 23889999999999999864

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK07482 hypothetical protein; Provisional

Probab=99.44  E-value=3.6e-10  Score=115.77  Aligned_cols=342  Identities=13%  Similarity=0.043  Sum_probs=183.8

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +.+.||+..|..-..-|.  -.|.|.+++.+.++... ...+ . ....+.+..+|+.|......  .-+++.+  +++|
T Consensus        49 G~~ylD~~sg~~~~~lGh--~~p~v~~Av~~q~~~~~~~~~~-~-~~~~~~~~~lAe~L~~~~p~--~~~~v~f--~~sG  120 (461)
T PRK07482         49 GRRYIDAFAGLYCVNVGY--GRTEVAEAIAEQAKELAYYHTY-V-GHGTEASITLSKRIIDRAPA--GMSKVYY--GLSG  120 (461)
T ss_pred             CCEEEEcccchhhhcCCC--CCHHHHHHHHHHHHhcCccccc-c-ccCCHHHHHHHHHHHHhCCC--CcCEEEE--eCch
Confidence            458899988865222233  36788888888876531 1111 0 01123334444444332110  1357888  9999


Q ss_pred             hhHHHHHHHHHHHh----C-C-CCEEEEcCCCCcchHHHHhh-CC------------CCeEEeeeecCCCC---C-----
Q 012238          161 TGSLRLAAALIERY----F-P-GAKVLISSPTWGNHKNIFND-AR------------VPWSEYRYYDPKTV---G-----  213 (467)
Q Consensus       161 t~al~l~~~~l~~~----~-~-gd~Vlv~~P~y~~~~~~~~~-~G------------~~~~~v~~~~~~~~---~-----  213 (467)
                      ++|++.+.++....    . + ..+|+....+|.+....... .|            -.+..++.......   +     
T Consensus       121 SEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  200 (461)
T PRK07482        121 SDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQ  200 (461)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHH
Confidence            99999986654332    1 2 25788888888765322111 11            01122221100000   0     


Q ss_pred             ---CChhhHHHHHHc-CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012238          214 ---LDFEGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (467)
Q Consensus       214 ---~d~~~l~~~l~~-~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~  288 (467)
                         .+++.+++.+.. .++....+++-..+.-.|.. ++.+-+++|.++|++||+++|.||+..+|.-.+   ..+... 
T Consensus       201 ~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG---~~~a~~-  276 (461)
T PRK07482        201 FSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLG---SMFGSD-  276 (461)
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCc---chhhHH-
Confidence               135677777753 23455666666556556776 567889999999999999999999988884221   122221 


Q ss_pred             HHhcCCeEEEEecCccCcccCCC-ccceEEEecCCHHHHhhhhhhhHHHHHHHHHh-------hccCccCCCchHHHHHH
Q 012238          289 FATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKR-------LARPMYSNPPVHGARIV  360 (467)
Q Consensus       289 ~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~  360 (467)
                      ...-.+++++   ++|.++ .|. .+|.++   ..+++.+.            +..       .....+.+.+.++..++
T Consensus       277 ~~gv~PDiv~---~gKgl~-gG~~Pi~av~---~~~~i~~~------------~~~~~~~~~~~~h~~T~~gnpl~~Aaa  337 (461)
T PRK07482        277 HYGIEPDLIT---VAKGLT-SAYAPLSGSI---VGEKVWDV------------LEQGSDEHGAIGHGWTYSGHPICAAAA  337 (461)
T ss_pred             hcCCCCCEEE---Eccccc-cCccccceee---ecHHHHHH------------HhcccccCCccccCCCCCcCHHHHHHH
Confidence            1222345454   489987 674 788874   66666665            321       01112334555666666


Q ss_pred             HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccCCCCCcccccCCcceE-Eec-C-C------C------H
Q 012238          361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMF-SFT-G-L------N------K  422 (467)
Q Consensus       361 ~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f-~~~-~-l------~------~  422 (467)
                      .+.|+-  +.+      +...++.++.-+++.+.|++   +.+.   ...+...|.++ +.+ . -      +      .
T Consensus       338 ~a~L~~--~~~------~~l~~~~~~~g~~l~~~L~~l~~~~~~---v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~  406 (461)
T PRK07482        338 LANLDI--LER------ENLVGNAAEVGAYFRARLRAAFGDHPL---VGEVRGVGMLAAVEFVADRDDRTPFDPALKIGP  406 (461)
T ss_pred             HHHHHH--HHh------CCHHHHHHHHHHHHHHHHHHHHhcCCC---EEEEeeceeEEEEEeccCCCcCCCCChhhHHHH
Confidence            555431  110      12233334444444444440   3332   11223333333 111 1 0      1      1


Q ss_pred             HHHHHHHHcccEEEeCC--C---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          423 AQSDNMTNKWHVYMTKD--G---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       423 ~~~~~ll~~~gI~v~~g--g---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .+...+++ +||++.+.  |   |+... .++++++++++++|.++++++
T Consensus       407 ~i~~~~~~-~Gvl~~~~~~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~  455 (461)
T PRK07482        407 QVSAAALE-RGVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDAVDEV  455 (461)
T ss_pred             HHHHHHHH-CCcEEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            23445554 69998643  4   66532 348899999999999998753

>PRK05965 hypothetical protein; Provisional

Probab=99.44  E-value=3.9e-10  Score=115.39  Aligned_cols=344  Identities=11%  Similarity=0.055  Sum_probs=185.1

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC-C---cCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeec
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-K---EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~-~---~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (467)
                      +.+.||+..|..-..-|.  -.|.|.+++.+.++.... .   .| +.....+|-+.+++..-.      .-+++++  +
T Consensus        45 G~~ylD~~~g~~~~~lGh--~~p~i~~Ai~~q~~~~~~~~~~~~~-~~~~~~~lae~L~~~~p~------~~~~v~f--~  113 (459)
T PRK05965         45 GHQLLDAFAGLWCVNVGY--GQESIVEAAAEQMRELPYATGYFHF-GSEPAIRLAAKLAERAPG------SLNHVYF--T  113 (459)
T ss_pred             CCEEEECcccHHhccCCC--CCHHHHHHHHHHHHhcCCccccccc-CCHHHHHHHHHHHhhCCC------CcCEEEE--e
Confidence            458899987754222232  367888888887754210 1   11 122222344444443211      1357888  9


Q ss_pred             CCchhHHHHHHHHHHHhC-----C-CCEEEEcCCCCcchHHHH-hhC---------CC---CeEEeeeecC--CCCCCC-
Q 012238          158 LSGTGSLRLAAALIERYF-----P-GAKVLISSPTWGNHKNIF-NDA---------RV---PWSEYRYYDP--KTVGLD-  215 (467)
Q Consensus       158 ~ggt~al~l~~~~l~~~~-----~-gd~Vlv~~P~y~~~~~~~-~~~---------G~---~~~~v~~~~~--~~~~~d-  215 (467)
                      ++|++|.+.+.++.....     + ..+|+....+|.+..... ...         |.   .+..++....  ..+..| 
T Consensus       114 ~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (459)
T PRK05965        114 LGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDP  193 (459)
T ss_pred             CChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCCh
Confidence            999999999866644431     2 257999999987654211 111         10   1122222100  001123 


Q ss_pred             -------hhhHHHHHHcCC-CCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012238          216 -------FEGMIADIKAAP-GGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (467)
Q Consensus       216 -------~~~l~~~l~~~~-~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~  286 (467)
                             ++.+++.+.... +....+++...+...|.. ++.+-+++|.++|++||+++|.||+..+|.-.+   ..+..
T Consensus       194 ~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG---~~~a~  270 (459)
T PRK05965        194 QAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTG---PLFAC  270 (459)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCc---hhhhH
Confidence                   256777776432 445566666566666764 577889999999999999999999988884221   12222


Q ss_pred             HHHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHH---hhccCccCCCchHHHHHHHH
Q 012238          287 RLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLK---RLARPMYSNPPVHGARIVAN  362 (467)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~  362 (467)
                       ....-.+++++   ++|.++ .| +.+|.++   ..+++.+.        +.....   ......+.+.++++..++.+
T Consensus       271 -~~~gv~PDiv~---~gKgl~-gG~~Pi~av~---~~~~i~~~--------~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a  334 (459)
T PRK05965        271 -EAEGVVPDLMT---VAKGLT-SGYVPMGAVL---MSDHVYQG--------IADGAGAAAPVGHGYTYSAHPVSAAVGLE  334 (459)
T ss_pred             -hhcCCCCCeEE---echhhc-cCCcceeEEE---EcHHHHHH--------HhccccccccccccCCCCCCHHHHHHHHH
Confidence             11122345443   479998 78 4899985   67777765        211000   01111233445555555555


Q ss_pred             HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceEEe-c--CC------C------HHHHH
Q 012238          363 VVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSF-T--GL------N------KAQSD  426 (467)
Q Consensus       363 ~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~~-~--~l------~------~~~~~  426 (467)
                      .|+-  +    ++  +...++.++.-++|.+.|+ ++. .|. +..+...|.++.+ +  +-      +      ..+..
T Consensus       335 ~L~~--l----~~--~~l~~~~~~~g~~l~~~l~-~l~~~~~-v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~  404 (459)
T PRK05965        335 VLRL--Y----HE--GGLLANGQKAGPRFAAGLD-ALRAHPL-VGDVRGRGLLGALELVADKATKTPFDAALDPADRIFD  404 (459)
T ss_pred             HHHH--H----Hh--ccHHHHHHHHHHHHHHHHH-hhccCCC-EEEEeecceEEEEEEeccccccCCCCchhHHHHHHHH
Confidence            4421  1    10  1233444555555556665 431 110 1112233332211 1  10      0      12234


Q ss_pred             HHHHcccEEEeCCC--eEEec---cCChhhHHHHHHHHHHHHHhc
Q 012238          427 NMTNKWHVYMTKDG--RISLA---GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       427 ~ll~~~gI~v~~gg--Ris~~---~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .++ ++||++.+.|  -|.+.   .++++++++++++|.++++++
T Consensus       405 ~~~-~~Gll~~~~g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~  448 (459)
T PRK05965        405 RAY-ANGLVFRAFGDGVLGFAPALCCTEGEFDLIFERTRKTLDDV  448 (459)
T ss_pred             HHH-hCCeEEEecCCcEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence            444 4699998865  24433   248899999999999998754

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.44  E-value=1.3e-10  Score=118.39  Aligned_cols=344  Identities=11%  Similarity=0.044  Sum_probs=184.1

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-CCcC-CCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEY-LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-~~~Y-~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +...||+..|..-..-|.  -.|.|.+++.+.++... ...+ .+..-..++-+.+++..-..      -+++.+  +++
T Consensus        45 G~~ylD~~~g~~~~~lGh--~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~------~~~v~f--~~s  114 (442)
T PRK13360         45 GRRVLDGTAGLWCVNAGH--GRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGG------LNHVFF--TNS  114 (442)
T ss_pred             CCEEEECchhHHHhccCC--CCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCC------CCEEEE--eCC
Confidence            457899987743111222  36778888888775411 1111 01112223334444432111      247888  999


Q ss_pred             chhHHHHHHHHHHHhC-----C-CCEEEEcCCCCcchHHH-HhhCC------------CCeEEeeeecC-C--CCCC---
Q 012238          160 GTGSLRLAAALIERYF-----P-GAKVLISSPTWGNHKNI-FNDAR------------VPWSEYRYYDP-K--TVGL---  214 (467)
Q Consensus       160 gt~al~l~~~~l~~~~-----~-gd~Vlv~~P~y~~~~~~-~~~~G------------~~~~~v~~~~~-~--~~~~---  214 (467)
                      |++|.+.+.++.....     + ..+|+....+|.+.... +...|            -.+..+|.... .  .+..   
T Consensus       115 GseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  194 (442)
T PRK13360        115 GSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQP  194 (442)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChH
Confidence            9999999866544432     2 25799999888765321 11111            11222332100 0  0111   


Q ss_pred             -----ChhhHHHHHHcC-CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012238          215 -----DFEGMIADIKAA-PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR  287 (467)
Q Consensus       215 -----d~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~  287 (467)
                           ..+.+++.+... +++..++++-..+.-.|.. .+.+.+++|.++|++||+++|+||+..++.-.+   ..+.. 
T Consensus       195 ~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG---~~~a~-  270 (442)
T PRK13360        195 EHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLG---APFAA-  270 (442)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc---cchhh-
Confidence                 145677777543 2445566666555556665 467789999999999999999999987774211   11111 


Q ss_pred             HHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHH---hhccCccCCCchHHHHHHHHH
Q 012238          288 LFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLK---RLARPMYSNPPVHGARIVANV  363 (467)
Q Consensus       288 ~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~  363 (467)
                      ....-.++++   +|+|.++ .| +.+|.++   .++++.+.        +...-.   ......+.+.+.++..++...
T Consensus       271 ~~~gv~PDiv---t~gK~l~-gG~~P~gav~---~~~~i~~~--------~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~  335 (442)
T PRK13360        271 QYFGVTPDLL---TCAKGLT-NGAIPMGAVF---VSSEIHDA--------FMQGPEAGIEFFHGYTYSGHPLACAAALAT  335 (442)
T ss_pred             hhcCCCCcee---eeeeccc-cCccceEEEE---EcHHHHHH--------hhcCCccccccccCCCCCCCHHHHHHHHHH
Confidence            1112122333   6799997 56 6788874   67777665        211000   011122223455555555554


Q ss_pred             hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceEE---ecCC----C---HHHHHHHHHcc
Q 012238          364 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFS---FTGL----N---KAQSDNMTNKW  432 (467)
Q Consensus       364 L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~---~~~l----~---~~~~~~ll~~~  432 (467)
                      |+-  +    ++  +...++.+++-+++.+.|+ ++. .+. +..+... |++.   +...    .   .+...++++ +
T Consensus       336 L~~--l----~~--~~l~~~~~~~g~~l~~~l~-~l~~~~~-v~~vrG~-Gl~~~~~l~~~~~~~~~~~~~~~~~l~~-~  403 (442)
T PRK13360        336 LDL--Y----ER--EGLLTRAARLAPYWEDALH-SLRDAPH-VIDIRNL-GLVGAVELAPRDGKPGKRAYEVFLKCFE-K  403 (442)
T ss_pred             HHH--H----Hh--CCHHHHHHHHHHHHHHHHH-HhhcCCC-eeeeecc-ceEEEEEEecCCCCcchhHHHHHHHHHH-C
Confidence            431  1    11  1244455555566666665 442 111 1111222 2221   1111    1   133455555 6


Q ss_pred             cEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          433 HVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       433 gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ||++.++|   ||+.. .++++++++++++|.++++++
T Consensus       404 Gvl~~~~~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  441 (442)
T PRK13360        404 GLMIRYTGDILALSPPLIIEEAQIDELFDILAQALKET  441 (442)
T ss_pred             CcEEEecCCEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence            99998876   77743 238899999999999999865

>PRK07481 hypothetical protein; Provisional

Probab=99.44  E-value=4.3e-10  Score=114.87  Aligned_cols=344  Identities=13%  Similarity=0.076  Sum_probs=181.7

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCC-cC--CCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK-EY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~-~Y--~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      +.+.||+..|..-..-|.  -.|.|.+++.+.+...... .+  .+.....++-+.+++.+...     .-+++.+  ++
T Consensus        41 G~~ylD~~~g~~~~~lGh--~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~-----~~~~v~f--~~  111 (449)
T PRK07481         41 GKKLLDGVGGLWNVNVGH--NREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPE-----GMRRVFF--SS  111 (449)
T ss_pred             CCEEEECchhHHhhcCCC--CCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCC-----CCCEEEE--cC
Confidence            457899977743122232  3577888888877542211 11  12222333444444442100     1357888  99


Q ss_pred             CchhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHHH-HhhCCC------------CeEEeeeecCC--CCC-CCh
Q 012238          159 SGTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKNI-FNDARV------------PWSEYRYYDPK--TVG-LDF  216 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~-----~g-d~Vlv~~P~y~~~~~~-~~~~G~------------~~~~v~~~~~~--~~~-~d~  216 (467)
                      +|++|.+.+.++.....     +| .+|+...-+|.+.... +...|-            .+..++.....  .+. .|+
T Consensus       112 sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~  191 (449)
T PRK07481        112 GGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDP  191 (449)
T ss_pred             chHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCH
Confidence            99999999866554432     23 5789999888765432 211110            12222211000  011 134


Q ss_pred             hhH--------HHHHH-cCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012238          217 EGM--------IADIK-AAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (467)
Q Consensus       217 ~~l--------~~~l~-~~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~  286 (467)
                      +.+        ++.+. ..+++...+++-..+.-.|.. ++.+-++++.++|++||+++|.||+..+|.-.+   ..+..
T Consensus       192 ~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~a~  268 (449)
T PRK07481        192 EELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTG---SWFGS  268 (449)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCc---hhhHh
Confidence            333        33333 223455666666555555664 567789999999999999999999988874221   11111


Q ss_pred             HHHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHH---hhccCccCCCchHHHHHHHH
Q 012238          287 RLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLK---RLARPMYSNPPVHGARIVAN  362 (467)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~  362 (467)
                       ....-.+++++   ++|.++ .| +.+|.++   ..+++.+.        +.....   ......+.+.+.++..++..
T Consensus       269 -~~~gv~PDiv~---~gKgl~-gG~~Pi~av~---~~~~i~~~--------~~~~~~~~~~~~h~~T~~gnpl~~aaa~a  332 (449)
T PRK07481        269 -RGWGVKPDIMC---LAKGIT-SGYVPLGATM---VNARIADA--------FEANADFGGAIMHGYTYSGHPVACAAALA  332 (449)
T ss_pred             -hhcCCCCCEEE---Eeeccc-CCCcCceEEE---EcHHHHHH--------HhccCccccccccCCCCCCCHHHHHHHHH
Confidence             11122234443   489987 67 4888885   66777665        211000   01111233445555555555


Q ss_pred             HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----cCCCCCcccccCCcceEE-ec--CC------C--H----H
Q 012238          363 VVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK----DKSGKDWSFILRQIGMFS-FT--GL------N--K----A  423 (467)
Q Consensus       363 ~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~----~g~~~~~~~~~~~~g~f~-~~--~l------~--~----~  423 (467)
                      .|+-  +.+      +...++.++.-+++.+.|+ +    .+.   ...+...|-++. .+  +.      +  .    .
T Consensus       333 ~L~~--l~~------~~l~~~~~~~g~~l~~~L~-~l~~~~~~---i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~  400 (449)
T PRK07481        333 TLDI--VVR------EDLPANAAKRGAYLLEGLQ-PLKERFEL---VGDVRGKGLMLALDLVADKATREPIDPSKGYANA  400 (449)
T ss_pred             HHHH--HHh------hhHHHHHHHHHHHHHHHHH-HHhhcCCC---eEEEeecceEEEEEecccccccCCCCchhHHHHH
Confidence            5431  110      1233344444444555554 3    221   112223333321 11  10      1  1    2


Q ss_pred             HHHHHHHcccEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          424 QSDNMTNKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       424 ~~~~ll~~~gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +...+++ +||++.+.|   ||+.. .++++++++++++|.++++++
T Consensus       401 ~~~~~~~-~Gvl~~~~g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~  446 (449)
T PRK07481        401 VADVARE-NGVLVRPSGTKIILSPPLVIQREDVDRIVDALDAGLSAV  446 (449)
T ss_pred             HHHHHHh-CCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            2344444 699998876   67643 248899999999999999875

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.44  E-value=3.6e-10  Score=116.52  Aligned_cols=346  Identities=13%  Similarity=0.037  Sum_probs=184.0

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCC-cchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI-EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~-~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +.+.|||..|..-..-|  .-.|.|.+++.+.++... . +... .+..+....+++.|...... ..-+++.+  +++|
T Consensus        88 G~~ylD~~sg~~~~~lG--h~hp~v~~Av~~ql~~~~-~-~~~~~~~~~~~~~~lae~L~~~~~~-~~~~~v~f--~~SG  160 (504)
T PLN02760         88 GKKYLDALAGLWCTALG--GSEPRLVAAATEQLNKLP-F-YHSFWNRTTKPSLDLAKELLEMFTA-RKMGKVFF--TNSG  160 (504)
T ss_pred             CCEEEEcCcCHHhcccC--CCCHHHHHHHHHHHhhcc-c-eecccccCcHHHHHHHHHHHhhcCC-CCCCEEEE--eCCh
Confidence            45889998875322223  236788888888875421 1 1111 12223344455554332110 01247888  8999


Q ss_pred             hhHHHHHHHHHHHh----C-CC-CEEEEcCCCCcchHH-HHhhCCCC------------eEEeeeecCCCCC--------
Q 012238          161 TGSLRLAAALIERY----F-PG-AKVLISSPTWGNHKN-IFNDARVP------------WSEYRYYDPKTVG--------  213 (467)
Q Consensus       161 t~al~l~~~~l~~~----~-~g-d~Vlv~~P~y~~~~~-~~~~~G~~------------~~~v~~~~~~~~~--------  213 (467)
                      ++|.+.+.++....    . ++ .+|+...-+|..... .+...|..            +..++......+.        
T Consensus       161 sEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  240 (504)
T PLN02760        161 SEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEE  240 (504)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHH
Confidence            99999985554322    1 22 578888888876533 22222221            1112210000000        


Q ss_pred             ---CChhhHHHHHHc-CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012238          214 ---LDFEGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (467)
Q Consensus       214 ---~d~~~l~~~l~~-~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~  288 (467)
                         ...+.+++.+.. .+....++++-..+.-.|.+ .+.+-+++|.++|++||+++|+||+..+|.--+   ..+.. .
T Consensus       241 ~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG---~~~a~-e  316 (504)
T PLN02760        241 FSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLG---TMFGC-D  316 (504)
T ss_pred             HHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccc---hhhHH-H
Confidence               012346666642 22445566665555555665 467889999999999999999999987774221   12222 1


Q ss_pred             HHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHH---hhccCccCCCchHHHHHHHHHh
Q 012238          289 FATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLK---RLARPMYSNPPVHGARIVANVV  364 (467)
Q Consensus       289 ~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~L  364 (467)
                      ...-.++   +-.|+|.++ .| +.+|.++   .++++.+.        +...-.   ......+.+.++++..++.+.|
T Consensus       317 ~~gv~PD---ivtlgK~lg-gG~~PigAv~---~~~~i~d~--------~~~~~~~~~~~~h~~T~~gnPl~~Aaala~L  381 (504)
T PLN02760        317 KYNIKPD---LVSLAKALS-SAYMPIGAVL---VSPEISDV--------IHSQSNKLGSFAHGFTYSGHPVSCAVALEAL  381 (504)
T ss_pred             hcCCCCc---EEEeccccc-CCccccceEe---ecHHHHhh--------hhcccccccCcccCCCCCCCHHHHHHHHHHH
Confidence            1122234   356789997 56 4788874   67777776        221000   0111223334555555655554


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---CCCCCcccccCCcceEEe--cC-C--------C---H-HHHH
Q 012238          365 GNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD---KSGKDWSFILRQIGMFSF--TG-L--------N---K-AQSD  426 (467)
Q Consensus       365 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~---g~~~~~~~~~~~~g~f~~--~~-l--------~---~-~~~~  426 (467)
                      +-  +    ++  +...++.+++-++|.+.|+ ++   ++   +..+...|.++.+  .+ -        +   . .+.+
T Consensus       382 e~--i----~~--~~l~~~~~~~g~~l~~~L~-~l~~~~~---v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~  449 (504)
T PLN02760        382 KI--Y----KE--RNIPEHVNKIAPRFQDGIK-AFSGSPI---IGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGA  449 (504)
T ss_pred             HH--H----Hh--CCHHHHHHHHHHHHHHHHH-HHhcCCC---eeeEEeCceEEEEEEecCCcccccccchhHHHHHHHH
Confidence            31  1    11  1234444455555555554 33   21   1112233333321  11 0        0   1 1234


Q ss_pred             HHHHcccEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          427 NMTNKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       427 ~ll~~~gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .+++ +||++.+.|   ||+.. .+++++++++++++.++++.+
T Consensus       450 ~~~~-~Gvl~~~~g~~lrl~Ppl~it~eeid~~~~~l~~al~~~  492 (504)
T PLN02760        450 ECKK-RGMLVRVAGDNIMMSPPLIITPEEVDELISIYGKALKAT  492 (504)
T ss_pred             HHHh-CCcEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            5554 699998876   67743 238899999999999998754

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.43  E-value=3.9e-10  Score=115.43  Aligned_cols=343  Identities=8%  Similarity=0.022  Sum_probs=185.2

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-C--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-N--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      +...||+..|..-..-|.  -.|.|.+++.+.++... .  ..| ......+|-+.+++..-.      .-+++.+  ++
T Consensus        46 G~~ylD~~~g~~~~~lGh--~~p~v~~Ai~~ql~~l~~~~~~~~-~~~~~~~lae~L~~~~p~------~~~~v~f--~~  114 (466)
T PRK07030         46 GKRYLDAVSSWWVNVFGH--ANPRINQRIKDQVDQLEHVILAGF-SHEPVIELSERLVKITPP------GLSRCFY--AD  114 (466)
T ss_pred             CCEEEEcchhHHhhcCCC--CCHHHHHHHHHHHHhcCCcccccc-CCHHHHHHHHHHHHhCCC------CcCEEEE--eC
Confidence            357899987753112233  25778888888775421 0  122 222233344444443211      1258888  99


Q ss_pred             CchhHHHHHHHHHHHh----C-C-CCEEEEcCCCCcchHHH-HhhCCC------------CeEEeeeecCC--CCCC---
Q 012238          159 SGTGSLRLAAALIERY----F-P-GAKVLISSPTWGNHKNI-FNDARV------------PWSEYRYYDPK--TVGL---  214 (467)
Q Consensus       159 ggt~al~l~~~~l~~~----~-~-gd~Vlv~~P~y~~~~~~-~~~~G~------------~~~~v~~~~~~--~~~~---  214 (467)
                      +|++|.+.+.++....    . + ..+|+...-+|.+.... +...|.            .+..+|..+..  ..+.   
T Consensus       115 sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~  194 (466)
T PRK07030        115 NGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWE  194 (466)
T ss_pred             CcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHH
Confidence            9999999986554333    1 2 35788889888765432 221121            12222221100  0011   


Q ss_pred             -----ChhhHHHHHHcCCCCcEEEEeCC-CCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012238          215 -----DFEGMIADIKAAPGGSFILLHGC-AHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR  287 (467)
Q Consensus       215 -----d~~~l~~~l~~~~~~~~~i~i~~-p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~  287 (467)
                           +++.+++.+...+++...+++-. .+.-.|. .++.+.+++|.++|++||+++|.||+..+|.-.+   ..+.. 
T Consensus       195 ~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG---~~~a~-  270 (466)
T PRK07030        195 EHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTG---TMFAC-  270 (466)
T ss_pred             HHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccc---cchHH-
Confidence                 24556777765445555555544 2444566 4567889999999999999999999988875321   12222 


Q ss_pred             HHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHH---hhccCccCCCchHHHHHHHHH
Q 012238          288 LFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLK---RLARPMYSNPPVHGARIVANV  363 (467)
Q Consensus       288 ~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~  363 (467)
                      ....-.++++++   +|.++ .| +.+|.++   ..+++.+.        +.....   ......+.+.+.++..++.+.
T Consensus       271 ~~~gv~PDiv~~---gKgl~-gG~~Pi~av~---~~~ei~~~--------~~~~~~~~~~~~h~~T~~gnpla~aaa~a~  335 (466)
T PRK07030        271 EQAGIRPDFLCL---SKALT-GGYLPLAAVL---TTDTVYQA--------FYDDYPTLRAFLHSHSYTGNPLACAAALAT  335 (466)
T ss_pred             HhcCCCCCEEee---ehhcc-CCcccceEEE---ecHHHHHH--------HhcccccccccccCCCCCCCHHHHHHHHHH
Confidence            112223454443   89998 78 4889885   77777665        211000   011112333455555565555


Q ss_pred             hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceEEecCC------------C----HHHHH
Q 012238          364 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL------------N----KAQSD  426 (467)
Q Consensus       364 L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~~~~l------------~----~~~~~  426 (467)
                      |+-  +    ++  +...++.+++-+++.+.|+ ++. .|. +..+...| +++-+.+            +    ..+.+
T Consensus       336 L~~--i----~~--~~l~~~~~~~G~~l~~~L~-~l~~~~~-v~~vrG~G-l~~gie~~~~~~~~~~~~~~~~~~~~i~~  404 (466)
T PRK07030        336 LDI--F----EQ--DNVIENNRALARRMAEATA-HLADHPH-VAEVRQTG-MILAIEMVQDKASKTPYPWQERRGLKVYQ  404 (466)
T ss_pred             HHH--H----Hh--cCHHHHHHHHHHHHHHHHH-HHhcCCC-EEEeEece-eEEEEEeccCccccccCcchhHHHHHHHH
Confidence            431  1    10  1233444455555555555 431 111 11122333 3322211            0    12344


Q ss_pred             HHHHcccEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          427 NMTNKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       427 ~ll~~~gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ++++ +||++.+.|   |+... .+++++++.+++++.++++++
T Consensus       405 ~~~~-~Gvl~~~~g~~i~~~Ppl~it~~eid~~~~~l~~al~~~  447 (466)
T PRK07030        405 HALE-RGALLRPLGSVVYFLPPYVITPEQIDFLAEVASEGIDIA  447 (466)
T ss_pred             HHHH-CCeEEEecCCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence            5554 699998865   55422 348899999999999999864

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.43  E-value=6.5e-11  Score=117.17  Aligned_cols=319  Identities=13%  Similarity=0.066  Sum_probs=180.0

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +...+|+..|..-..-+.  -+|.+.+++.+.++...  ...| +.....+|.+.++++. +       .+++++  +++
T Consensus        23 G~~ylD~~~g~~~~~lGh--~~p~v~~ai~~ql~~~~~~~~~~-~~~~~~~la~~l~~~~-~-------~~~v~~--~~S   89 (364)
T PRK04013         23 GRRYLDLIAGIGVNVLGH--NHPEWVEEMSEQLEKLVVAGPMF-EHEEKEEMLEELSKWV-N-------YEYVYM--GNS   89 (364)
T ss_pred             CCEEEEcccChhhccCCC--CCHHHHHHHHHHHHhcCCccCCc-CCHHHHHHHHHHHhhc-C-------CCEEEE--eCc
Confidence            457899987753222233  25677788888775421  1123 3334455666666653 1       247888  999


Q ss_pred             chhHHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHhh--------CCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCc
Q 012238          160 GTGSLRLAAALIERYFPG-AKVLISSPTWGNHKNIFND--------ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS  230 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~g-d~Vlv~~P~y~~~~~~~~~--------~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  230 (467)
                      |++|++.+.++.... +| ++|+...-+|.......-.        .+..+...++. ... ..|++.+++.+.   ++.
T Consensus        90 GseA~e~Alklar~~-~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~-~~~-~~d~~~l~~~i~---~~~  163 (364)
T PRK04013         90 GTEAVEAALKFARLY-TGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFK-HIP-FNDVEAAKEAIT---KET  163 (364)
T ss_pred             hHHHHHHHHHHHHHH-hCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcE-Eec-CCCHHHHHHHhc---CCc
Confidence            999999986654444 45 8999999988765432222        11111110010 001 136788888886   456


Q ss_pred             EEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC
Q 012238          231 FILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (467)
Q Consensus       231 ~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (467)
                      ..+++...+...|.. .+.+.|++|.++|++||+++|+||+..++..+.    .+... ...-.+++++   ++|.++ .
T Consensus       164 aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~----~~a~~-~~gv~PDiv~---~gK~lg-g  234 (364)
T PRK04013        164 AAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGK----FLAIE-HYKVEPDIVT---MGKGIG-N  234 (364)
T ss_pred             EEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCc----hhHHH-hcCCCCCEEE---eccccc-C
Confidence            677766666555554 467789999999999999999999988874441    22221 1222344443   489998 6


Q ss_pred             CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012238          310 AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ  389 (467)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~  389 (467)
                      |+.+|.++   ...++ ..            .   ....+.+.+.++..++.+.|+-  +.+  ++.+++.++.      
T Consensus       235 G~P~~a~~---~~~~~-~~------------~---~~~~T~~gnp~~~aaa~a~l~~--i~~--~~l~~~~~~~------  285 (364)
T PRK04013        235 GVPVSLTL---TNFDV-ER------------G---KHGSTFGGNPLACKAVAVTLRI--LRR--ERLVEKAGEK------  285 (364)
T ss_pred             CceeEEEE---ecccc-cC------------C---CcCCCCCcCHHHHHHHHHHHHH--HHh--ccHHHHHHHH------
Confidence            88899885   33332 11            1   1122334555555555554431  100  0111121111      


Q ss_pred             HHHHHhhhccCCCCCcccccCCcceEEecCCC--H-HHHHHHHHcccEEEeCCC----eEEec-cCChhhHHHHHHHHHH
Q 012238          390 KLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN--K-AQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIID  461 (467)
Q Consensus       390 ~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~--~-~~~~~ll~~~gI~v~~gg----Ris~~-~~~~~~i~~~~~~l~~  461 (467)
                       + +.+. . ..   +..+... |+++-+.+.  . ...+.+++ +|+++.+.|    ||.-. .++++++++++++|.+
T Consensus       286 -l-~~l~-~-~~---v~~vRG~-Gl~~gve~~~~~~~i~~~~~~-~Gll~~~~g~~vlr~~Ppl~it~~~i~~~~~~l~~  356 (364)
T PRK04013        286 -F-IEIK-G-ER---VVTTRGR-GLMIGIVLKKPVGKYVEELQN-RGYLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEG  356 (364)
T ss_pred             -H-HHhc-c-Cc---ceeeeeC-cEEEEEEeCCcHHHHHHHHHh-CCcEEeeCCCCEEEEeCCcccCHHHHHHHHHHHHH
Confidence             2 1222 1 10   1112233 334333221  2 33445554 699998765    66543 2488999999999999


Q ss_pred             HHHhc
Q 012238          462 SYHNV  466 (467)
Q Consensus       462 ~l~~~  466 (467)
                      +++++
T Consensus       357 ~l~~~  361 (364)
T PRK04013        357 VINDI  361 (364)
T ss_pred             HHHHH
Confidence            98764

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.42  E-value=2e-11  Score=127.86  Aligned_cols=176  Identities=14%  Similarity=0.088  Sum_probs=116.5

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEE
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSE  203 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~  203 (467)
                      |..-+.+..+.+|+.++.+       .-.++  ++|+|.++..+  +++.+.+||+|++...|+-.....+...|+.+++
T Consensus       193 ~~G~i~eAe~~AA~~fgAd-------~tyfv--vNGTS~~n~av--~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVY  261 (714)
T PRK15400        193 HSGPHKEAEEYIARVFNAD-------RSYMV--TNGTSTANKIV--GMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIY  261 (714)
T ss_pred             CChHHHHHHHHHHHHhCCC-------cEEEE--eCchHHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEE
Confidence            3434566666677764332       23444  79999999887  6777889999999999998888899999999999


Q ss_pred             eeeecCCCC----CCC-----hhhHHHHHHcCCCCc--EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC
Q 012238          204 YRYYDPKTV----GLD-----FEGMIADIKAAPGGS--FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ  272 (467)
Q Consensus       204 v~~~~~~~~----~~d-----~~~l~~~l~~~~~~~--~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~  272 (467)
                      ++..- +.+    +++     .+.+++.+++.+...  +.+++++| +=-|++++.++   |++.|..++  |++||||.
T Consensus       262 l~P~r-n~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~---I~~~~~~~~--ilvDEAwg  334 (714)
T PRK15400        262 FRPTR-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDF---IKKTLDVKS--IHFDSAWV  334 (714)
T ss_pred             ecccc-cccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHH---HHHHhCCCC--EEEEccch
Confidence            85432 222    345     899999998765322  24555544 33499998774   555576666  68999986


Q ss_pred             CC-CCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          273 GF-ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       273 ~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      .. .|.+.-.+..++....+.++.++++.|.+|.+  +|+.-+.++++
T Consensus       335 ah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL--~alTQaS~LHv  380 (714)
T PRK15400        335 PYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLL--AAFSQASMIHV  380 (714)
T ss_pred             hhhccCcccCCcChhhcCCCCCCceEEEEchhhcc--cchhHHhHHHH
Confidence            54 33321111222211112235679999999997  56766666544

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.42  E-value=6.4e-11  Score=108.00  Aligned_cols=316  Identities=15%  Similarity=0.101  Sum_probs=181.5

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc---CC-----CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceee
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER---GE-----NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~---~~-----~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      .+++||+...|.   +... .|.+.++-..++++   +.     ..+|  ..-...|...||++ +++      ++-|+-
T Consensus        67 k~ilnFcaNnYL---GLss-hPeii~a~~~aleeyGaGlssvrfIcGt--q~iHk~LE~kiAqf-h~r------ED~ily  133 (417)
T KOG1359|consen   67 KKILNFCANNYL---GLSS-HPEIINAGQKALEEYGAGLSSVRFICGT--QDIHKLLESKIAQF-HGR------EDTILY  133 (417)
T ss_pred             cceeeecccccc---cccC-ChHHHHHHHHHHHHhCCCccceeEEecc--hHHHHHHHHHHHHH-hCC------CceEEe
Confidence            478999988874   3332 56677766666643   11     0112  11245677788888 554      444544


Q ss_pred             eecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC-CCCcEEE
Q 012238          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-PGGSFIL  233 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~-~~~~~~i  233 (467)
                         +.+-.|..-+  +-+.+.|.|.|+--.--+....+-++.+.           ...-.|+-.++..+... ..+-+++
T Consensus       134 ---pscfdANag~--feail~pedAvfSDeLNhASIIdGirLck-----------ry~h~dv~~l~~~l~~a~k~r~klv  197 (417)
T KOG1359|consen  134 ---PSCFDANAGA--FEAILTPEDAVFSDELNHASIIDGIRLCK-----------RYRHVDVFDLEHCLISACKMRLKLV  197 (417)
T ss_pred             ---ccccccchHH--HHHhcChhhhhhccccccchhhhhhHHHh-----------hhccchhHHHHHHHHHhhhheEEEE
Confidence               4444444333  33446677777655554444444444332           11125666666555432 2466677


Q ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcCCeEEEEecCccCcc-cCCC
Q 012238          234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLG-LYAE  311 (467)
Q Consensus       234 ~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~-~~G~  311 (467)
                      +....-.-.|-+.|.+   +|.+++++||.++++||++..+.++.-   ........ -.++..++.++++|.+| ..| 
T Consensus       198 ~TDg~FSMDGdiaPl~---ei~~La~kYgaLlfiDecHaTgf~G~t---GrGt~E~~~vm~~vdiinsTLgKAlGga~G-  270 (417)
T KOG1359|consen  198 VTDGVFSMDGDIAPLE---EISQLAKKYGALLFIDECHATGFFGET---GRGTAEEFGVMGDVDIINSTLGKALGGASG-  270 (417)
T ss_pred             EecceeccCCCcccHH---HHHHHHHhcCcEEEEeecccceeecCC---CCChHHHhCCCCcceehhhhhhhhhcCCCC-
Confidence            7666666677776655   777779999999999999887766531   11222222 24567788999999997 444 


Q ss_pred             ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc-cCC--CchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238          312 RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM-YSN--PPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  388 (467)
Q Consensus       312 RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~--~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r  388 (467)
                        ||.   ++++.++.-            ++.-.+++ +++  ||++.. .+..++   ++    .-.-.+...+.+.+-
T Consensus       271 --Gyt---tgp~~li~l------------lrqr~RpylFSnslppavV~-~a~ka~---dl----lm~s~~~i~~~~a~~  325 (417)
T KOG1359|consen  271 --GYT---TGPKPLISL------------LRQRSRPYLFSNSLPPAVVG-MAAKAY---DL----LMVSSKEIQSRQANT  325 (417)
T ss_pred             --CCc---cCChhHHHH------------HHhcCCceeecCCCChhhhh-hhHHHH---HH----HHhhHHHHHHHHHHH
Confidence              898   599988886            55444443 332  222221 111111   11    000123445555666


Q ss_pred             HHHHHHhhhccCCCCCcccccCCcce-EEecCC---CHHHHHHHHHcccEEEeCC-------C----eEEecc-CChhhH
Q 012238          389 QKLFDSLSAKDKSGKDWSFILRQIGM-FSFTGL---NKAQSDNMTNKWHVYMTKD-------G----RISLAG-LSLAKC  452 (467)
Q Consensus       389 ~~l~~~l~~~~g~~~~~~~~~~~~g~-f~~~~l---~~~~~~~ll~~~gI~v~~g-------g----Ris~~~-~~~~~i  452 (467)
                      +++++.++ ..|    +......... -+.+|.   .....++||+. ||+|..-       |    |+.++. .+++++
T Consensus       326 qrfr~~me-~aG----ftIsg~~hPI~pv~lGda~lA~~~ad~lLk~-Gi~Vigfs~PvVP~gkariRVqiSAaHt~edi  399 (417)
T KOG1359|consen  326 QRFREFME-AAG----FTISGASHPICPVMLGDARLASKMADELLKR-GIYVIGFSYPVVPKGKARIRVQISAAHTEEDI  399 (417)
T ss_pred             HHHHHHHH-hcC----ceecCCCCCccceecccHHHHHHHHHHHHhc-CceEEeecCCcCCCCceEEEEEEehhcCHHHH
Confidence            67777776 666    3333221111 133342   34557788875 9987432       4    555542 388999


Q ss_pred             HHHHHHHHHHHHh
Q 012238          453 EYLADAIIDSYHN  465 (467)
Q Consensus       453 ~~~~~~l~~~l~~  465 (467)
                      +++++++.++.+.
T Consensus       400 d~~i~Af~~vgr~  412 (417)
T KOG1359|consen  400 DRLIEAFSEVGRF  412 (417)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.42  E-value=5.1e-10  Score=114.13  Aligned_cols=343  Identities=12%  Similarity=0.012  Sum_probs=185.1

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-C--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-N--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      +.+.||+..|.--..-|.  -.|.|.+++.+.++... .  ..| ......++-+.+++....      .-+++.+  ++
T Consensus        48 G~~ylD~~~g~~~~~lGh--~~p~v~~ai~~ql~~l~~~~~~~~-~~~~~~~la~~L~~~~p~------~~~~v~f--~~  116 (445)
T PRK09221         48 GRKILDGTAGLWCCNAGH--GRPEIVEAVARQAATLDYAPAFQM-GHPLAFELAERLAELAPG------GLDHVFF--TN  116 (445)
T ss_pred             CCEEEEccccHhhccCCC--CCHHHHHHHHHHHHhccCcccccc-CCHHHHHHHHHHHHhCCC------CCCEEEE--eC
Confidence            357899987743112232  36778888887775411 0  111 122222344444443211      0257888  99


Q ss_pred             CchhHHHHHHHHHHHhC-----C-CCEEEEcCCCCcchHHHHh-hCC------------CCeEEeeeec--CC-CCCC--
Q 012238          159 SGTGSLRLAAALIERYF-----P-GAKVLISSPTWGNHKNIFN-DAR------------VPWSEYRYYD--PK-TVGL--  214 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~-----~-gd~Vlv~~P~y~~~~~~~~-~~G------------~~~~~v~~~~--~~-~~~~--  214 (467)
                      +|++|.+.+.++...+.     + ..+|+....+|.+.....- ..|            ..+..+|...  .. .+..  
T Consensus       117 sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (445)
T PRK09221        117 SGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQ  196 (445)
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCCh
Confidence            99999999866544432     1 2478888888876532211 111            1122232210  00 0111  


Q ss_pred             ------ChhhHHHHHHcCC-CCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012238          215 ------DFEGMIADIKAAP-GGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (467)
Q Consensus       215 ------d~~~l~~~l~~~~-~~~~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~  286 (467)
                            ..+.+++.++..+ ++...+++-..+.-.|... +.+-+++|.++|++||+++|+||+..+|.-.+   ..+..
T Consensus       197 ~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG---~~~~~  273 (445)
T PRK09221        197 PEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLG---AAFAA  273 (445)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCc---hhhHH
Confidence                  1356777776432 4555666666666667754 56779999999999999999999987764211   11212


Q ss_pred             HHHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHH---HhhccCccCCCchHHHHHHHH
Q 012238          287 RLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQL---KRLARPMYSNPPVHGARIVAN  362 (467)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~  362 (467)
                      .. ..-.+++   -.++|.++ .| +.+|.++   .++++.+.        +...-   .......+.+.+.++..++..
T Consensus       274 ~~-~gv~PDi---~~~gK~l~-gG~~Pi~av~---~~~~i~~~--------~~~~~~~~~~~~~~~T~~~~pl~~aaa~a  337 (445)
T PRK09221        274 ER-FGVTPDI---ITFAKGLT-NGAIPMGAVI---ASDEIYDA--------FMQGPEYAIEFFHGYTYSAHPVACAAGLA  337 (445)
T ss_pred             Hh-cCCCCCE---EEeccccc-cCcccceeeE---EcHHHHHh--------hccCcccccccccccCCCcCHHHHHHHHH
Confidence            11 1112232   36789997 45 5688874   67777765        21100   001111222345555455544


Q ss_pred             HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCcccccCCcceEEecCC------C----HHHHHHHHHc
Q 012238          363 VVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFILRQIGMFSFTGL------N----KAQSDNMTNK  431 (467)
Q Consensus       363 ~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~-g~~~~~~~~~~~~g~f~~~~l------~----~~~~~~ll~~  431 (467)
                      .|+.  +    ++  +...++.+++-+++.+.|+ ++ +.+. +..+... |.++-+.+      +    ....+.+++ 
T Consensus       338 ~L~~--i----~~--~~l~~~~~~~g~~l~~~l~-~l~~~~~-v~~vrg~-Gl~~~v~~~~~~~~~~~~~~~~~~~~~~-  405 (445)
T PRK09221        338 TLDI--Y----RE--EDLFERAAELAPYFEDAVH-SLKGLPH-VIDIRNI-GLVAGIELAPRPGAPGARGYEAFMKCFE-  405 (445)
T ss_pred             HHHH--H----Hh--ccHHHHHHHHHHHHHHHHH-hhccCCC-EEEEecC-ceEEEEEEecccccccchHHHHHHHHHH-
Confidence            4421  1    11  1345566666677777776 54 2111 1112222 22221111      1    123445554 


Q ss_pred             ccEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          432 WHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       432 ~gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +||++.++|   ||+.. .++++++++++++|++++.++
T Consensus       406 ~Gv~~~~~~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  444 (445)
T PRK09221        406 KGLLVRYTGDTIALSPPLIIEKAQIDELVDALGDALRAV  444 (445)
T ss_pred             CCeEEeecCCEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence            699998876   77643 238899999999999999765

>PRK07678 aminotransferase; Validated

Probab=99.41  E-value=6.4e-10  Score=113.66  Aligned_cols=343  Identities=10%  Similarity=0.032  Sum_probs=180.7

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCC--cCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK--EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~--~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.||+..|..-..-|.  -.|.|.+++.+.++.....  .| +..-..+|-+.+++.+..       .+.+.+  +++
T Consensus        46 G~~ylD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~~~~~~~~-~~~~~~~lae~l~~~~~~-------~~~v~f--~~s  113 (451)
T PRK07678         46 GNRYLDGMSGLWCVNVGY--GRKELAEAAYEQLKTLSYFPLTQ-SHEPAIKLAEKLNEWLGG-------EYVIFF--SNS  113 (451)
T ss_pred             CCEEEEccccHHhhcCCC--CCHHHHHHHHHHHHhcCcccccc-CCHHHHHHHHHHHHhCCC-------CCEEEE--eCC
Confidence            457899987753122232  3677888888877542111  12 222223444444444211       247888  999


Q ss_pred             chhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHHHHh-hCCC------------CeEEeeeecCCC--CC-----
Q 012238          160 GTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKNIFN-DARV------------PWSEYRYYDPKT--VG-----  213 (467)
Q Consensus       160 gt~al~l~~~~l~~~~-----~g-d~Vlv~~P~y~~~~~~~~-~~G~------------~~~~v~~~~~~~--~~-----  213 (467)
                      |++|.+.+.++.....     +| .+|+...-+|.+...... ..|.            .+..+|..+...  ++     
T Consensus       114 GseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (451)
T PRK07678        114 GSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDI  193 (451)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHH
Confidence            9999999866554432     23 578888888876543222 1111            122222210000  00     


Q ss_pred             CC---hhhHHHHHH-cCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012238          214 LD---FEGMIADIK-AAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (467)
Q Consensus       214 ~d---~~~l~~~l~-~~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~  288 (467)
                      .|   .+.+++.++ ..+++...+++-..+.-.|.+ ++.+-++++.++|++||+++|.||+..+|.-.+   ..+....
T Consensus       194 ~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~~~~~  270 (451)
T PRK07678        194 YDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTG---KAFGFMN  270 (451)
T ss_pred             HHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCc---hhHHHHh
Confidence            01   123455564 223455666665555445665 567889999999999999999999987884321   1222211


Q ss_pred             HHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHH--hhccCccCCCchHHHHHHHHHhC
Q 012238          289 FATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLK--RLARPMYSNPPVHGARIVANVVG  365 (467)
Q Consensus       289 ~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~L~  365 (467)
                       ..-.++++   .++|.++ .| +.+|.++   ..+++.+.        +.....  ......+.+.++++..++.+.|+
T Consensus       271 -~gv~PDiv---t~gK~lg-gG~~Pi~av~---~~~~i~~~--------~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~  334 (451)
T PRK07678        271 -YGVKPDII---TMAKGIT-SAYLPLSATA---VKKEIYEA--------FKGKGEYEHFRHVNTFGGNPAACALALKNLE  334 (451)
T ss_pred             -cCCCCCEE---Eeecccc-cCCcceeEEE---EcHHHHHH--------HhccCcccccccCCCCCcCHHHHHHHHHHHH
Confidence             12223444   5689998 66 6888885   67777765        211000  01112233445555555555543


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccCCCCCcccccCCcceEE-ec--C------CCH----HHHHHHH
Q 012238          366 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFS-FT--G------LNK----AQSDNMT  429 (467)
Q Consensus       366 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f~-~~--~------l~~----~~~~~ll  429 (467)
                      .  +.    +  +...++.++.-++|.+.|++   +.+.   ...+...|.++- .+  +      .+.    .+...++
T Consensus       335 ~--l~----~--~~~~~~~~~~g~~l~~~l~~~~~~~~~---v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~  403 (451)
T PRK07678        335 I--ME----N--ENLIERSAQLGELLLEQLKEELGEHPL---VGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACK  403 (451)
T ss_pred             H--HH----h--CCHHHHHHHHHHHHHHHHHHHHhcCCC---EEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHH
Confidence            1  11    0  02223333333444444430   3332   111233333331 11  1      011    2234455


Q ss_pred             HcccEEEeCC-------C---eEEec-cCChhhHHHHHHHHHHHHHhcC
Q 012238          430 NKWHVYMTKD-------G---RISLA-GLSLAKCEYLADAIIDSYHNVS  467 (467)
Q Consensus       430 ~~~gI~v~~g-------g---Ris~~-~~~~~~i~~~~~~l~~~l~~~~  467 (467)
                      + +||++.+.       +   ||+.. .+++++++++++++.++++++.
T Consensus       404 ~-~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~~  451 (451)
T PRK07678        404 E-KGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERIK  451 (451)
T ss_pred             H-CCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhcC
Confidence            4 69998653       2   55533 3488999999999999998763

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.41  E-value=1.1e-09  Score=112.18  Aligned_cols=347  Identities=12%  Similarity=0.034  Sum_probs=182.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC-CC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-EN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~-~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      +...||+..|.--..-|.  -.|.|.+++.+.++.- ..  ..| +..-..+|-+.+++.+....+. -.-+++.+  ++
T Consensus        63 G~~ylD~~~g~~~~~lGh--~~p~i~~Ai~~q~~~l~~~~~~~~-~~~~~~~lae~L~~~~p~~~~~-~~~~~v~f--~~  136 (472)
T PRK08742         63 GRRYLDAVSSWWTNLFGH--AEPRIGAAIAAQAGELEQVMLAGF-THEPAVQLAEQLLAIAPRQDGR-APLSKVFY--AD  136 (472)
T ss_pred             CCEEEEcCccHHhccCCC--CCHHHHHHHHHHHHhCCCcccccc-CCHHHHHHHHHHHHhCCCcccC-CCCCEEEE--eC
Confidence            457899988743222233  3677888887776431 11  112 1222233334444432111000 01248888  99


Q ss_pred             CchhHHHHHHHHHHHhC-----C-CCEEEEcCCCCcchHHHHh-hCCC------------CeEEeeeecCC--CCCC---
Q 012238          159 SGTGSLRLAAALIERYF-----P-GAKVLISSPTWGNHKNIFN-DARV------------PWSEYRYYDPK--TVGL---  214 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~-----~-gd~Vlv~~P~y~~~~~~~~-~~G~------------~~~~v~~~~~~--~~~~---  214 (467)
                      +|++|.+.+.++...+.     + ..+|+...-+|.+...... ..|.            .+..+|..+..  ..+.   
T Consensus       137 sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~  216 (472)
T PRK08742        137 NGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAE  216 (472)
T ss_pred             CchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHH
Confidence            99999999866654441     2 2589999988876543222 1111            12222221100  0111   


Q ss_pred             -----ChhhHHHHHHcCCCCcEEEEeCC-CCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012238          215 -----DFEGMIADIKAAPGGSFILLHGC-AHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR  287 (467)
Q Consensus       215 -----d~~~l~~~l~~~~~~~~~i~i~~-p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~  287 (467)
                           +++.+++.+...+.....+++-. .+.-.|. .++.+.++++.++|++||+++|.||+..+|.-.+   ..+...
T Consensus       217 ~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG---~~~a~e  293 (472)
T PRK08742        217 DYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTG---TLFACE  293 (472)
T ss_pred             HHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc---cchHHH
Confidence                 24666777764444555665554 3556676 5678889999999999999999999988885321   122221


Q ss_pred             HHHhcCCeEEEEecCccCcccCCC-ccceEEEecCCHHHHhhhhhhhHHHHHHHHH--hhccCccCCCchHHHHHHHHHh
Q 012238          288 LFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARCCEVAVIQVKSQLK--RLARPMYSNPPVHGARIVANVV  364 (467)
Q Consensus       288 ~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~L  364 (467)
                      . ..-.++++++   +|.++ .|. .+|.++   ..+++.+.        +.....  ......+.+.+.++..++.+.|
T Consensus       294 ~-~gv~PDiv~~---gKgl~-gG~~Plaav~---~~~ei~~~--------~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L  357 (472)
T PRK08742        294 Q-AGVMPDLLCL---SKGLT-GGFLPLSAVL---ATQQLYDA--------FLDDSRERAFLHSHSYTGNPLACAAALATL  357 (472)
T ss_pred             h-cCCCCCEEEE---ccccc-CCCCCcceee---ccHHHHHH--------hhccCccCccCcCCCCCccHHHHHHHHHHH
Confidence            1 1223455543   89998 674 788885   77777665        211000  0011123334555555555554


Q ss_pred             C---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEe--cC-C------C------HHHHH
Q 012238          365 G---NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF--TG-L------N------KAQSD  426 (467)
Q Consensus       365 ~---~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~--~~-l------~------~~~~~  426 (467)
                      +   ++.+    .+...++.++++   + +.+.+. +.+.   +..+...|-++.+  .. -      .      ....+
T Consensus       358 ~~i~~~~l----~~~~~~~g~~l~---~-~~~~~~-~~~~---i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~  425 (472)
T PRK08742        358 DIFADDDV----IARNQPTAARMT---Q-LAAQIG-EHPH---VADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYR  425 (472)
T ss_pred             HHHHHCCH----HHHHHHHHHHHH---H-HHHHHh-cCCC---eeeEeccceEEEEEeccCccccccCCchhHHHHHHHH
Confidence            3   1111    111222222222   1 222233 3322   1222333333311  11 0      1      11234


Q ss_pred             HHHHcccEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          427 NMTNKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       427 ~ll~~~gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ++++ +||++.+.|   ||.-. .++++++++++++|.++++++
T Consensus       426 ~~~~-~Gll~~~~g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~  468 (472)
T PRK08742        426 AALA-RGVVLRPLGDVLYWMPPYCVDEAQLALLADTTRHAIDEA  468 (472)
T ss_pred             HHHH-CCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            5554 699999876   55533 248899999999999999763

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.40  E-value=8.9e-10  Score=112.80  Aligned_cols=345  Identities=8%  Similarity=0.005  Sum_probs=186.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-C-CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-N-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-~-~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.||+..|.....-|.  -.|.|.+++.+.++... . ..+.......+|-+.+++..-.      .-+++.+  +++
T Consensus        55 G~~ylD~~~g~~~~~lGh--~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~------~~~~v~f--~~S  124 (460)
T PRK06916         55 GNEYYDGVSSIWLNVHGH--QVPELDEAIREQLNKIAHSTLLGLANVPSILLAEKLIEVVPE------GLKKVFY--SDS  124 (460)
T ss_pred             CCEEEEcchhHHHhhcCC--CCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCC------CCCEEEE--eCC
Confidence            457899877643111232  36778888888775411 1 1111233333444555554211      1257888  999


Q ss_pred             chhHHHHHHHHHHHh-----CCC-CEEEEcCCCCcchHHH-HhhCCC------------CeEEeeeecCC--CCC-----
Q 012238          160 GTGSLRLAAALIERY-----FPG-AKVLISSPTWGNHKNI-FNDARV------------PWSEYRYYDPK--TVG-----  213 (467)
Q Consensus       160 gt~al~l~~~~l~~~-----~~g-d~Vlv~~P~y~~~~~~-~~~~G~------------~~~~v~~~~~~--~~~-----  213 (467)
                      |++|.+.+.++....     .+| .+|+...-+|.+.... +...|.            .+..+|..+..  .++     
T Consensus       125 GseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~  204 (460)
T PRK06916        125 GATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAE  204 (460)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHH
Confidence            999999986654432     233 5889999888764332 222221            12223221000  011     


Q ss_pred             ---CChhhHHHHHHcCCCCcEEEEeCC-CCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012238          214 ---LDFEGMIADIKAAPGGSFILLHGC-AHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (467)
Q Consensus       214 ---~d~~~l~~~l~~~~~~~~~i~i~~-p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~  288 (467)
                         -+++.+++.++..+++...+++-. .+.-.|.+ ++.+-+++|.++|++||+++|.||+..+|.-.+   ..+.. .
T Consensus       205 ~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG---~~~a~-~  280 (460)
T PRK06916        205 IVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTG---KMFAC-E  280 (460)
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCc---hhhHH-H
Confidence               135666777765445555666554 35556765 588899999999999999999999987773221   12222 1


Q ss_pred             HHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHH---HhhccCccCCCchHHHHHHHHHh
Q 012238          289 FATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQL---KRLARPMYSNPPVHGARIVANVV  364 (467)
Q Consensus       289 ~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~L  364 (467)
                      ...-.++++   .++|.++ .| +.+|.++   ..+++.+.        +....   .......+.+.+.++..++...|
T Consensus       281 ~~gv~PDiv---~~gK~l~-gG~~Pi~av~---~~~ei~~~--------~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l  345 (460)
T PRK06916        281 HENVTPDIM---TAGKGLT-GGYLPIAITV---TTDEIYNA--------FYGDYEEQKTFFHGHSYTGNPLGCAVALANL  345 (460)
T ss_pred             hcCCCCCee---eeehhhh-cCccccceee---ecHHHHHH--------hhccccccCccccCCCCCCCHHHHHHHHHHH
Confidence            112223444   4689998 77 5889885   67777665        21100   01111112234555555555554


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceEEe-c--CC--------C----HHHHHHH
Q 012238          365 GNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSF-T--GL--------N----KAQSDNM  428 (467)
Q Consensus       365 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~~-~--~l--------~----~~~~~~l  428 (467)
                      +-  +    ++  +...++.+++-+++.+.|+ ++. .+. +..+...|-++-. +  +-        +    ..+...+
T Consensus       346 ~~--l----~~--~~l~~~~~~~g~~l~~~l~-~l~~~~~-v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~  415 (460)
T PRK06916        346 EL--Y----EK--TNLIEQVARKTEYVATQLE-DLFALKH-VGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRS  415 (460)
T ss_pred             HH--H----Hh--ccHHHHHHHHHHHHHHHHH-HhhcCCC-eEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHH
Confidence            21  1    10  1233444455555555555 431 110 1112233333211 1  10        0    1223444


Q ss_pred             HHcccEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          429 TNKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       429 l~~~gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ++ +||++.+.|   |+... .++++++++++++|.++++++
T Consensus       416 ~~-~Gvl~~~~g~~l~~~Ppl~it~~~id~~~~~l~~~l~~~  456 (460)
T PRK06916        416 RE-LGMLTRPLGNTIVFMPPLASTIDELDEMLRILYKAISDV  456 (460)
T ss_pred             HH-CCeEEEecCCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            54 699999876   55522 348899999999999999764

>PRK06105 aminotransferase; Provisional

Probab=99.40  E-value=8e-10  Score=113.17  Aligned_cols=341  Identities=11%  Similarity=0.039  Sum_probs=183.1

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-CCcCC--CCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      +.+.||+..|..-..-|.  -+|.|.+++.+.++... ...+.  ......++-+.+++....      .-+++.+  ++
T Consensus        47 G~~ylD~~~g~~~~~lGh--~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~------~~~~v~f--~~  116 (460)
T PRK06105         47 GKRYIEGMAGLWSVALGF--SEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPV------PMSKVFF--TN  116 (460)
T ss_pred             CCEEEEcchhHHhccCCC--CCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCC------CCCEEEE--eC
Confidence            458999988753122233  36788888888875421 01110  122222344444444211      1257888  99


Q ss_pred             CchhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHHHH-hhCCC------------CeEEeeeecCCCCC------
Q 012238          159 SGTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKNIF-NDARV------------PWSEYRYYDPKTVG------  213 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~-----~g-d~Vlv~~P~y~~~~~~~-~~~G~------------~~~~v~~~~~~~~~------  213 (467)
                      +|++|.+.+.++.....     +| .+|+...-+|....... ...|.            .+..++..+...+.      
T Consensus       117 SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  196 (460)
T PRK06105        117 SGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESE  196 (460)
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCCh
Confidence            99999999865543221     23 47888888886543221 11111            11122221000000      


Q ss_pred             -----CChhhHHHHHHc-CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012238          214 -----LDFEGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (467)
Q Consensus       214 -----~d~~~l~~~l~~-~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~  286 (467)
                           ...+.+++.+.. .+.+...|++-.-+.-.|.. .+++-+++|.++|++||+++|+||++.+|.-.+   ..+..
T Consensus       197 ~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG---~~f~~  273 (460)
T PRK06105        197 EAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTG---NMFGC  273 (460)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCc---hhhhH
Confidence                 013556676643 22445566665555555665 578889999999999999999999987774211   12222


Q ss_pred             HHHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh-------ccCccCCCchHHHH
Q 012238          287 RLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL-------ARPMYSNPPVHGAR  358 (467)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~  358 (467)
                       ....-.++++   .++|.++ .| +.+|.++   .++++.+.            +...       ....+.+.++++..
T Consensus       274 -~~~~v~PDi~---~~gK~lg-gG~~P~~av~---~~~~i~~~------------~~~~~~~~~~~~h~~T~~gnpl~~a  333 (460)
T PRK06105        274 -ETFGIKPDIL---VMSKQLS-SSYQPLSAVL---MNEKVYDP------------IADESGKIGTFGHGFTASGHPVAAA  333 (460)
T ss_pred             -HhcCCCCCee---eeecccc-cCcccceEEE---EcHHHHHH------------HhcccccCcccccCCCCCCCHHHHH
Confidence             1112223433   5789998 56 5788885   67777665            3321       01123345555655


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceE-Eec--C-C-----C------H
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMF-SFT--G-L-----N------K  422 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f-~~~--~-l-----~------~  422 (467)
                      ++...|+-  +    ++  +...++.+++-++|.+.|+ ++. .|. +..+...|.++ +.+  + .     +      .
T Consensus       334 aa~a~L~~--i----~~--~~l~~~v~~~g~~l~~~L~-~l~~~~~-v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~  403 (460)
T PRK06105        334 VALENLAI--I----EE--RDLVGNAAERGARLQARLR-ALADHPL-VGEVRGVGLIAAVELVADKATKTPFEPPGKVGA  403 (460)
T ss_pred             HHHHHHHH--H----Hh--ccHHHHHHHHHHHHHHHHH-HhhcCCC-eEEEEecceEEEEEEecCcccCCCCCchhHHHH
Confidence            55555431  1    10  1234444455555555555 331 110 11222333322 111  1 0     0      1


Q ss_pred             HHHHHHHHcccEEEeCCC---eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          423 AQSDNMTNKWHVYMTKDG---RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       423 ~~~~~ll~~~gI~v~~gg---Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .+...++ ++||++.+.|   ||+... +++++++++++++.++++++
T Consensus       404 ~i~~~~~-~~Gvl~~~~g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~  450 (460)
T PRK06105        404 RANAAAH-EHGVISRAMGDTLAFCPPLIITAAQVDEMVDRFGRALDDV  450 (460)
T ss_pred             HHHHHHH-HCCeEEEecCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence            2233444 5699998876   666442 48899999999999998764

>PRK06917 hypothetical protein; Provisional

Probab=99.40  E-value=6.9e-10  Score=113.21  Aligned_cols=338  Identities=11%  Similarity=0.012  Sum_probs=179.9

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC---CCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL---PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~---~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      +.+.||+..|..-..-|.  -.|.|.+++.+.++... +.+.   ......+|-+.+++.+-..      .+.+.+  ++
T Consensus        30 G~~ylD~~~g~~~~~lGh--~hp~v~~Ai~~ql~~~~-~~~~~~~~~~~~~~lae~L~~~~p~~------~~~v~f--~~   98 (447)
T PRK06917         30 GNKYFDGSSGAVTAGIGH--GVKEIADAIKEQAEEVS-FVYRSQFTSEPAEKLAKKLSDLSPGD------LNWSFF--VN   98 (447)
T ss_pred             CCEEEECchhHHhccCCC--CCHHHHHHHHHHHhhCc-CccccccCCHHHHHHHHHHHHhCCCC------CCEEEE--eC
Confidence            357899987743111232  36788888888776421 2211   2222334444444442111      247888  99


Q ss_pred             CchhHHHHHHHHHHHh-----CCC-CEEEEcCCCCcchHHHH-hhCCC------------CeEEeeeecCCCC--C----
Q 012238          159 SGTGSLRLAAALIERY-----FPG-AKVLISSPTWGNHKNIF-NDARV------------PWSEYRYYDPKTV--G----  213 (467)
Q Consensus       159 ggt~al~l~~~~l~~~-----~~g-d~Vlv~~P~y~~~~~~~-~~~G~------------~~~~v~~~~~~~~--~----  213 (467)
                      +|++|.+.+.++....     .+| .+|+...-+|....... ...|.            .+..++.......  .    
T Consensus        99 sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  178 (447)
T PRK06917         99 SGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYP  178 (447)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChH
Confidence            9999999985554322     133 58999898887654322 22221            1111221000000  0    


Q ss_pred             ----CChhhHHHHHHcCC-CCcEEEEeCCCCC-CCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012238          214 ----LDFEGMIADIKAAP-GGSFILLHGCAHN-PTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (467)
Q Consensus       214 ----~d~~~l~~~l~~~~-~~~~~i~i~~p~N-PTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~  286 (467)
                          -+.+.+++.++... +....+++-..+. --|. ..+.+-+++|.++|++||+++|.||+..+|.-.+   ..+..
T Consensus       179 ~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG---~~~a~  255 (447)
T PRK06917        179 TCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTG---AMFAM  255 (447)
T ss_pred             HHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCccc---chhhH
Confidence                12356677776432 2344555443332 3344 5578889999999999999999999987763211   11111


Q ss_pred             HHHHhcCCeEEEEecCccCcccCCC-ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh----ccCccCCCchHHHHHHH
Q 012238          287 RLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL----ARPMYSNPPVHGARIVA  361 (467)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~  361 (467)
                       ....-.++++   .++|.++ .|. .+|.++   ..+++.+.            +...    ....+.+.+.++..++.
T Consensus       256 -~~~gv~PDi~---~~gK~l~-~G~~Pi~a~~---~~~~i~~~------------~~~~~~~~~~~~T~~gnpl~~aaa~  315 (447)
T PRK06917        256 -EHWGVEPDIM---TLGKGLG-AGYTPIAATV---VSDRVMEP------------ILRGSRSIMSGHTLSANPLSAATAL  315 (447)
T ss_pred             -HhcCCCCCEE---Eeeehhc-cCCcceEEEE---EcHHHHHH------------HhccCcccccccCCCCCHHHHHHHH
Confidence             1112223433   5689998 675 788885   67777665            3211    11123344555555555


Q ss_pred             HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----cCCCCCcccccCCcceEE-ec--C------C------CH
Q 012238          362 NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK----DKSGKDWSFILRQIGMFS-FT--G------L------NK  422 (467)
Q Consensus       362 ~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~----~g~~~~~~~~~~~~g~f~-~~--~------l------~~  422 (467)
                      +.|+-  +    ++  +...++.+++-++|.+.|+ +    .+.   ...+...|.++. .+  +      .      ..
T Consensus       316 a~l~~--l----~~--~~l~~~~~~~g~~l~~~L~-~l~~~~~~---i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~  383 (447)
T PRK06917        316 AVLEY--M----EK--HNLPEKAAEKGEYLIKGLQ-KVQQQSTI---IGDVRGKGLLIGVEFVADKKTKQPFSKSQAVAS  383 (447)
T ss_pred             HHHHH--H----HH--CCHHHHHHHHHHHHHHHHH-HHHhcCCC---EEEEeecceEEEEEEeccCCcCCCCcchhHHHH
Confidence            55431  1    00  1233444444444454544 3    222   112233333331 11  1      0      11


Q ss_pred             HHHHHHHHcccEEEeCC--------C---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          423 AQSDNMTNKWHVYMTKD--------G---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       423 ~~~~~ll~~~gI~v~~g--------g---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .+...+++ +||++.+.        |   ||+.. .++++++++++++|.++++++
T Consensus       384 ~~~~~~~~-~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~  438 (447)
T PRK06917        384 ELISVAAK-NGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEM  438 (447)
T ss_pred             HHHHHHHh-CCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence            23445555 69999764        2   66644 238899999999999998754

>PRK07036 hypothetical protein; Provisional

Probab=99.40  E-value=1.1e-09  Score=112.39  Aligned_cols=343  Identities=10%  Similarity=0.072  Sum_probs=181.0

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +.+.||+..|..-..-|.  -.|.|.+++.+.+.... ...+.  ....+.+..+|+.+......  .-+++.+  +++|
T Consensus        50 G~~ylD~~~g~~~~~lGh--~~p~v~~Ai~~q~~~~~~~~~~~--~~~~~~~~~lae~L~~~~p~--~~~~v~f--~~sG  121 (466)
T PRK07036         50 GRRYLDGIGGMWCVNVGY--GREEMADAIADQARRLPYYTPFG--DMTNAPAAELAAKLAELAPG--DLNHVFL--TTGG  121 (466)
T ss_pred             CCEEEECcccHHhhcCCC--CCHHHHHHHHHHHHhCccccccc--ccCCHHHHHHHHHHHHhCCC--CcCEEEE--eCCc
Confidence            457899987743111222  36778888888775421 11111  01112334444444332110  1247888  9999


Q ss_pred             hhHHHHHHHHHHHhC-----C-CCEEEEcCCCCcchHHHHhh-CCC------------CeEEeeeecC--CCCCCC----
Q 012238          161 TGSLRLAAALIERYF-----P-GAKVLISSPTWGNHKNIFND-ARV------------PWSEYRYYDP--KTVGLD----  215 (467)
Q Consensus       161 t~al~l~~~~l~~~~-----~-gd~Vlv~~P~y~~~~~~~~~-~G~------------~~~~v~~~~~--~~~~~d----  215 (467)
                      ++|.+.+.++.....     + ..+|+...-+|......+.. .|.            .+..++..+.  ...+.+    
T Consensus       122 seAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  201 (466)
T PRK07036        122 STAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAF  201 (466)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHH
Confidence            999999866543331     2 25788888888765432221 111            1222222110  001111    


Q ss_pred             ----hhhHHHHHHc-CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012238          216 ----FEGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (467)
Q Consensus       216 ----~~~l~~~l~~-~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~  289 (467)
                          .+.+++.+.. .++....+++-..+.-.|.. ++.+.+++|.++|++||+++|+||+..+|.-.+   ..+.....
T Consensus       202 ~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~~~~~~  278 (466)
T PRK07036        202 CDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLG---HFFASEAV  278 (466)
T ss_pred             HHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCc---hhhhhhhh
Confidence                2334455543 23455566666555555664 567889999999999999999999987773211   11121111


Q ss_pred             HhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHh-------hccCccCCCchHHHHHHH
Q 012238          290 ATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKR-------LARPMYSNPPVHGARIVA  361 (467)
Q Consensus       290 ~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~  361 (467)
                      ..-.++++   .++|.++ .| +.+|.++   ..+++.+.            +..       .....+.+.++++..++.
T Consensus       279 ~gv~PDiv---t~gK~l~-gG~~Pi~av~---~~~~i~~~------------~~~~~~~~~~~~~~~T~~gnpl~~aaa~  339 (466)
T PRK07036        279 FGIQPDII---TFAKGLT-SGYQPLGAVI---ISERLLDV------------ISGPNAKGNVFTHGFTYSGHPVACAAAL  339 (466)
T ss_pred             cCCCCCEE---EEccccc-cCccccEEEE---EcHHHHHH------------HhcccCcCcccccCCCCCCCHHHHHHHH
Confidence            12223433   4589998 67 4889885   67777765            321       111112234555555555


Q ss_pred             HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceEEecCC------------C----HHH
Q 012238          362 NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL------------N----KAQ  424 (467)
Q Consensus       362 ~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~~~~l------------~----~~~  424 (467)
                      ..|+.  +    ++  +...++.+++-++|.+.|+ ++. .|. ...+...|.++ -+.+            +    ..+
T Consensus       340 a~Le~--i----~~--~~l~~~~~~~g~~l~~~L~-~l~~~~~-v~~vrG~Gl~~-~ve~~~~~~~~~~~~~~~~~~~~~  408 (466)
T PRK07036        340 KNIEI--M----ER--EGLCEHVREVGPYFEERLA-SLRELPL-VGDVRGDHLMA-CVECVADKGSKALLPEDIAIGQRI  408 (466)
T ss_pred             HHHHH--H----Hh--CCHHHHHHHHHHHHHHHHH-HhccCCC-EEEEEeeceEE-EEEEccCccccCCCCchhHHHHHH
Confidence            55431  1    00  1233444444444555554 321 110 11223333332 2211            0    123


Q ss_pred             HHHHHHcccEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          425 SDNMTNKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       425 ~~~ll~~~gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ...+++ +||++.+.|   ||+.. .+++++++++++++.++++++
T Consensus       409 ~~~~~~-~Gvl~~~~~~~~~l~Ppl~it~~~id~~~~~l~~al~~~  453 (466)
T PRK07036        409 DRHCQE-RGLLVRPLEHLCVLSPPLIITRAQIDEIVAILRAAIEET  453 (466)
T ss_pred             HHHHHH-CCcEEeecCCEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence            445554 699998865   56533 248899999999999888653

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.39  E-value=9.9e-10  Score=111.22  Aligned_cols=334  Identities=10%  Similarity=0.036  Sum_probs=177.6

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcC--CCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y--~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.||+..|..-..-+.  -.|.+.+++.+.++......+  .......+|-+.+++....      .-+++.+  +++
T Consensus        39 G~~ylD~~~g~~~~~lGh--~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~------~~~~v~f--~~S  108 (422)
T PRK05630         39 GSTVIDAMSSWWSAAHGH--GHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDN------GLDHVFY--SDS  108 (422)
T ss_pred             CCEEEEcchhHHHhcCCC--CCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCC------CcCEEEE--eCC
Confidence            458899988754222232  367888888887754221111  1222233444445444211      0257888  999


Q ss_pred             chhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHHHH-hhCCC-------------CeEEeeeecCCCCCCCh---
Q 012238          160 GTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKNIF-NDARV-------------PWSEYRYYDPKTVGLDF---  216 (467)
Q Consensus       160 gt~al~l~~~~l~~~~-----~g-d~Vlv~~P~y~~~~~~~-~~~G~-------------~~~~v~~~~~~~~~~d~---  216 (467)
                      |++|.+.+.++.....     ++ .+|+....+|....... ...+-             .+..+|...  ....+.   
T Consensus       109 GseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~  186 (422)
T PRK05630        109 GSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPP--VRGSSPQEI  186 (422)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCc--ccCCChHHH
Confidence            9999999866544432     23 47999998887643222 11111             112222210  011121   


Q ss_pred             ----hhHHHHHHcCCCCcEEEEeCC-CCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH
Q 012238          217 ----EGMIADIKAAPGGSFILLHGC-AHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA  290 (467)
Q Consensus       217 ----~~l~~~l~~~~~~~~~i~i~~-p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~  290 (467)
                          +.+++.+.   .+...+++.. .+.-.|.. ++.+-+++|.++|++||+++|+||+..++.-.+   ..+.. ...
T Consensus       187 ~~~~~~~~~~~~---~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG---~~~a~-~~~  259 (422)
T PRK05630        187 SEYLRSLELLID---ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTG---ELFAT-LAA  259 (422)
T ss_pred             HHHHHHHHHHHh---hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCc---hhhHH-Hhc
Confidence                23334343   3455555554 26666774 567889999999999999999999987774221   12221 111


Q ss_pred             hcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh------ccCccCCCchHHHHHHHHH
Q 012238          291 TRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL------ARPMYSNPPVHGARIVANV  363 (467)
Q Consensus       291 ~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~  363 (467)
                      .-.++++   .++|.++ .| ..+|+++   .++++.+.            +...      ....+.+.+.++..++...
T Consensus       260 gv~PDi~---t~gK~l~-gG~~p~~av~---~~~~i~~~------------~~~~~~~~~~~h~~T~~g~Pla~aaa~aa  320 (422)
T PRK05630        260 GVTPDIM---CVGKALT-GGFMSFAATL---CTDKVAQL------------ISTPNGGGALMHGPTFMANPLACAVAHAS  320 (422)
T ss_pred             CCCCCee---eeechhh-cCccccceee---ccHHHHHH------------HhccCCCCccccCCCCcCCHHHHHHHHHH
Confidence            2223433   6799886 56 4678884   77777665            3211      1111223444454555444


Q ss_pred             hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceEEecCC----CHHH-HHHHHHcccEEEe
Q 012238          364 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL----NKAQ-SDNMTNKWHVYMT  437 (467)
Q Consensus       364 L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~~~~l----~~~~-~~~ll~~~gI~v~  437 (467)
                      |+-  +    ++  +...++++++-+++.+.|+ .+. .|. +..+...|. ++-+.+    .... .+.++ ++||++.
T Consensus       321 L~~--l----~~--~~~~~~~~~~g~~l~~~L~-~l~~~~~-v~~vRg~Gl-~~~ie~~~~~~~~~~~~~~~-~~Gl~~~  388 (422)
T PRK05630        321 LEI--I----ET--GMWRKQVKRIEAELIAGLS-PLAHLPG-VADVRVLGA-IGVVEMEQPVDMEEATQAAV-DHGVWLR  388 (422)
T ss_pred             HHH--H----Hh--CcHHHHHHHHHHHHHHHHH-HhhcCCC-eeeeecccc-EEEEEECCcccHHHHHHHHH-HCCeEEE
Confidence            421  1    00  0122344444444444444 321 110 111222333 322211    2333 44555 4699998


Q ss_pred             CCC---eEEec-cCChhhHHHHHHHHHHHHHh
Q 012238          438 KDG---RISLA-GLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       438 ~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~  465 (467)
                      +.|   ||... .++++++++++++|.++++.
T Consensus       389 ~~g~~l~~~PpL~it~~~i~~~~~~l~~al~~  420 (422)
T PRK05630        389 PFGRLVYVMPPYITTSEQIAQICAALAAAVKA  420 (422)
T ss_pred             ecCCEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence            876   65543 24889999999999999864

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.39  E-value=9e-11  Score=123.18  Aligned_cols=178  Identities=13%  Similarity=0.039  Sum_probs=115.8

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-HHhhCCCCeE
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN-IFNDARVPWS  202 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~-~~~~~G~~~~  202 (467)
                      |..-+.+..+.+|+.++.+       .-.++  ++|+|.++..+  +++.+.+||+|++...|+-.... .+...|+.++
T Consensus       172 ~eG~i~eAq~~AA~~fgAd-------~tyFl--vNGTS~gn~a~--i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PV  240 (720)
T PRK13578        172 HEGAAKDAQKHAAKVFNAD-------KTYFV--LNGTSASNKVV--TNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV  240 (720)
T ss_pred             CChHHHHHHHHHHHHhCCC-------ceEEE--eCChhHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHHcCCeEE
Confidence            3434566666666664332       23445  79999999987  67788899999999999988777 4889999999


Q ss_pred             EeeeecCC---CCCCChhh-----HHHHHHcCC-C------CcEEEEeCCCCCCCCCCCCHHHHHHHHHH-HHhcCCeeE
Q 012238          203 EYRYYDPK---TVGLDFEG-----MIADIKAAP-G------GSFILLHGCAHNPTGIDPTPEQWEKIADV-IQEKNHIPF  266 (467)
Q Consensus       203 ~v~~~~~~---~~~~d~~~-----l~~~l~~~~-~------~~~~i~i~~p~NPTG~~~~~~~l~~l~~~-~~~~~~~li  266 (467)
                      ++...-..   -++++.+.     +++++++.+ .      ..+++++++|+ --|++++.+   +|++. ++.++ .|+
T Consensus       241 Yl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pT-YdG~~ydi~---~I~~~~~h~~~-~ll  315 (720)
T PRK13578        241 YLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGT-YDGTIYNAR---QVVDKIGHLCD-YIL  315 (720)
T ss_pred             EeeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCC-CcceeecHH---HHHHHhhccCC-cEE
Confidence            98542211   12456555     888887652 2      14666665432 239998876   55555 56677 999


Q ss_pred             EeccCCCC-CCCCCCCChhHHH-HHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          267 FDVAYQGF-ASGSLDNDASSVR-LFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       267 ~Deay~~~-~~~~~~~~~~~~~-~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      +||||... .|.+.-.+.+... ..-..+..++++.|.+|.+  +++.-+.++++
T Consensus       316 vDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL--~alTQaS~LHv  368 (720)
T PRK13578        316 FDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQ--AGFSQTSQIHK  368 (720)
T ss_pred             EeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcc--hhhhhHhhhhc
Confidence            99998644 3432101111111 1111234679999999997  56777777654

>PLN02880 tyrosine decarboxylase

Probab=99.39  E-value=1.2e-09  Score=112.41  Aligned_cols=330  Identities=9%  Similarity=0.037  Sum_probs=191.3

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccc-----cCceeeeecCCchhHHHHHHHHHHH--hC
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK-----EQRVATVQGLSGTGSLRLAAALIER--YF  175 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~-----~~~i~~~~t~ggt~al~l~~~~l~~--~~  175 (467)
                      +..+-+.+...++.. ...|...++..++.+.+.+|+....|.+-.     ...-++  |.|||+|...+......  +.
T Consensus        96 ~~~lad~l~~~~n~~-~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~--tsggs~anl~al~~AR~~~~~  172 (490)
T PLN02880         96 AGFLGEMLSAGLNIV-GFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVI--QGTASEAVLVVLLAARDRVLR  172 (490)
T ss_pred             HHHHHHHHHHhhccC-CcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEE--cCccHHHHHHHHHHHHHHHHH
Confidence            344444445544432 234444456667777777777665554311     012345  79999998776322111  10


Q ss_pred             -------CCCEEEEcCCCCcchHHHHhhCCCC---eEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCC
Q 012238          176 -------PGAKVLISSPTWGNHKNIFNDARVP---WSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPT  242 (467)
Q Consensus       176 -------~gd~Vlv~~P~y~~~~~~~~~~G~~---~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~p~NPT  242 (467)
                             +.-.|++++-++.....+++.+|+.   ++.||+++.+++.+|++.|++.+++.   ...+.+|+-+.+...|
T Consensus       173 ~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~  252 (490)
T PLN02880        173 KVGKNALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSS  252 (490)
T ss_pred             HhcccccCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcC
Confidence                   1125667778888899999999995   78888854456789999999999752   2346777778889999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcccCCCccceEEEecC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      |.+-+.+   +|+++|++||+|+.+|.+|.++..-.     ...+..... ..-.-+..+++|.+..| .-.|.+.  +.
T Consensus       253 GaiDpl~---eI~~i~~~~~iwlHVDaA~gg~~~~~-----~~~~~~l~gie~aDSit~d~HKwl~~P-~~~g~ll--vr  321 (490)
T PLN02880        253 TAVDPLL---ELGKIAKSNGMWFHVDAAYAGSACIC-----PEYRHYIDGVEEADSFNMNAHKWFLTN-FDCSLLW--VK  321 (490)
T ss_pred             cccCcHH---HHHHHHHHcCCEEEEehhhHHHHHhC-----HHHHHHhcCchhcCEEEECchhhcCCC-ccEEEEE--Ee
Confidence            9977765   66777999999999999998775321     112222221 12346678899988644 6677775  34


Q ss_pred             CHHH-HhhhhhhhHHHHHHH---HHhhccC-------c-cC-----CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012238          322 SSDL-AARCCEVAVIQVKSQ---LKRLARP-------M-YS-----NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  384 (467)
Q Consensus       322 ~~~~-~~~~~~~~~~~~~~~---l~~~~~~-------~-~~-----~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~  384 (467)
                      +... ...        +...   +......       . +.     ....+...+....+.        .+.++++.++.
T Consensus       322 ~~~~l~~~--------~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G--------~~g~~~~i~~~  385 (490)
T PLN02880        322 DRNALIQS--------LSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYG--------VENLQSYIRNH  385 (490)
T ss_pred             CHHHHHHH--------HccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhC--------HHHHHHHHHHH
Confidence            4332 222        1000   0000000       0 00     000111111111111        23345555555


Q ss_pred             HHHHHHHHHHhhhccCCCCCcccccC-CcceEEec--C--CC--------HHHHHHHHHcccEEEeCC---C----eEEe
Q 012238          385 KNVRQKLFDSLSAKDKSGKDWSFILR-QIGMFSFT--G--LN--------KAQSDNMTNKWHVYMTKD---G----RISL  444 (467)
Q Consensus       385 ~~~r~~l~~~l~~~~g~~~~~~~~~~-~~g~f~~~--~--l~--------~~~~~~ll~~~gI~v~~g---g----Ris~  444 (467)
                      -+..+++.+.++ +..   .++...+ ..+..+|-  +  .+        .+..+++.++..+++...   |    |+++
T Consensus       386 ~~lA~~~~~~l~-~~~---~~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~  461 (490)
T PLN02880        386 IKLAKEFEQLVA-QDS---RFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAV  461 (490)
T ss_pred             HHHHHHHHHHHh-cCC---CEEEecCCceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEe
Confidence            577888888887 542   1454443 44444332  1  11        233456666667776653   3    9987


Q ss_pred             ccC--ChhhHHHHHHHHHHHHHhc
Q 012238          445 AGL--SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       445 ~~~--~~~~i~~~~~~l~~~l~~~  466 (467)
                      ...  ++++++.+++.|.++.+++
T Consensus       462 ~n~~tt~~di~~~~~~i~~~~~~~  485 (490)
T PLN02880        462 GAPLTEERHVTAAWKVLQDEASKL  485 (490)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHH
Confidence            654  4589999999998887653

>PRK12403 putative aminotransferase; Provisional

Probab=99.38  E-value=1.5e-09  Score=111.15  Aligned_cols=344  Identities=13%  Similarity=0.019  Sum_probs=175.6

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC-CcC--CCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~-~~Y--~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      +.+.||+..|..-..-|.  -.|.|.+++.+.++.... ..+  .+.....+|-+.+++++...      -+.+++  ++
T Consensus        53 G~~ylD~~~g~~~~~lGh--~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~------~~~v~f--~~  122 (460)
T PRK12403         53 GKRYLDGMSGLWCTNLGY--GRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGH------YSHAIY--TN  122 (460)
T ss_pred             CCEEEECchhHHhhcCCC--CCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCC------cCEEEE--eC
Confidence            457899887753222233  367888888888754211 111  12222344555555553211      257888  99


Q ss_pred             CchhHHHHHHHHHHHh-----CCCC-EEEEcCCCCcchHH-HHhhCCCC-----------eEEeeeecC--CCCCC----
Q 012238          159 SGTGSLRLAAALIERY-----FPGA-KVLISSPTWGNHKN-IFNDARVP-----------WSEYRYYDP--KTVGL----  214 (467)
Q Consensus       159 ggt~al~l~~~~l~~~-----~~gd-~Vlv~~P~y~~~~~-~~~~~G~~-----------~~~v~~~~~--~~~~~----  214 (467)
                      +|++|.+.+.++...+     .+++ .|+...-+|..... .+...|.+           +..+|....  ..+..    
T Consensus       123 SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  202 (460)
T PRK12403        123 SGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAE  202 (460)
T ss_pred             CcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHH
Confidence            9999999986665443     1333 34455667755422 22222211           222221000  00011    


Q ss_pred             ----ChhhHHHHHHc-CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012238          215 ----DFEGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (467)
Q Consensus       215 ----d~~~l~~~l~~-~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~  288 (467)
                          +.+.+++.+.+ .++....+++-.-+.-.|.+ .+.+-+++|.++|++||+++|.||+..+|.-.+   ..+.. .
T Consensus       203 ~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG---~~~a~-e  278 (460)
T PRK12403        203 FGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTG---EWFAH-E  278 (460)
T ss_pred             HHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---hhhhh-h
Confidence                12445555532 22445556655555555664 467889999999999999999999987774221   11111 1


Q ss_pred             HHhcCCeEEEEecCccCcccCCC-ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCCh
Q 012238          289 FATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNP  367 (467)
Q Consensus       289 ~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~  367 (467)
                      ...-.+++++   ++|.++ .|. .+|.++   ..+++.+.        +...-.......+.+.++++..++.+.|+- 
T Consensus       279 ~~gv~PDiv~---~gK~lg-gG~~Piga~v---~~~~i~~~--------~~~~~~~~~~~~T~~gnPl~~Aaala~L~~-  342 (460)
T PRK12403        279 HFGFEPDTLS---IAKGLT-SGYVPMGGLV---LSKRIAEA--------LVEQGGVFAHGLTYSGHPVAAAVAIANLKA-  342 (460)
T ss_pred             hcCCCCCeEE---Eccccc-ccccceEEEE---ECHHHHHH--------HhcCCCccccCCCCCCCHHHHHHHHHHHHH-
Confidence            1122234443   799998 674 788885   56666665        211000011112323455555555555431 


Q ss_pred             hhHHHHHHHHHHHHHHHH-HHHHHHHHHhhh---ccCCCCCcccccCCcceEE--ecC-------CCH--H----HHHHH
Q 012238          368 ALFDEWKAEMEMMAGRIK-NVRQKLFDSLSA---KDKSGKDWSFILRQIGMFS--FTG-------LNK--A----QSDNM  428 (467)
Q Consensus       368 ~~~~~~~~~l~~~~~~~~-~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f~--~~~-------l~~--~----~~~~l  428 (467)
                       +.+   +   ...++.+ ++-+++.+.|++   +.+.   +..+...|.++.  +..       ...  .    ....+
T Consensus       343 -i~~---~---~l~~~~~~~~g~~l~~~L~~l~~~~~~---i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~  412 (460)
T PRK12403        343 -LRD---E---GVVTRVKDDTGPYLQRCLREVFGDHPL---VGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIG  412 (460)
T ss_pred             -HHh---c---cHHHHHHHHHHHHHHHHHHHHHhcCCC---EEeEeecceEEEEEEccCccccccccchhHHHHHHHHHH
Confidence             110   0   1222232 233333333330   3332   112233333321  111       011  1    12233


Q ss_pred             HHcccEEEeCCC---eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          429 TNKWHVYMTKDG---RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       429 l~~~gI~v~~gg---Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ++ +||++.+.|   |++... +++++++++++++.+++.++
T Consensus       413 ~~-~Gll~~~~~~~~~l~Ppl~it~~eid~~~~~l~~al~~~  453 (460)
T PRK12403        413 FE-EGVIIRSTLGRMIMAPALVAGRAEIDELVDKTRIAVDRT  453 (460)
T ss_pred             Hh-CCEEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            44 699998754   555432 38899999999999998764

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.38  E-value=5.3e-10  Score=113.75  Aligned_cols=328  Identities=14%  Similarity=0.116  Sum_probs=170.2

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +...||+..|.--..-|.  -.|.|.+++.+.++...... .+.....++-+.+++....       .+.+.+  +++|+
T Consensus        47 G~~ylD~~~g~~~~~lGh--~~p~v~~Ai~~q~~~~~~~~-~~~~~~~~la~~l~~~~p~-------~~~v~f--~~sGs  114 (431)
T PRK06209         47 GNEYIEYGMGLRAVGLGH--AYPPVVEAVREALQDGCNFT-RPSAIELDAAESFLELIDG-------ADMVKF--CKNGS  114 (431)
T ss_pred             CCEEEEccccccchhcCC--CCHHHHHHHHHHHHhCcCCC-CCCHHHHHHHHHHHHhCCc-------cceEEE--ecCHH
Confidence            457899987753222233  36788888888876543211 1222222445555555311       247888  99999


Q ss_pred             hHHHHHHHHHHHhCCCC-EEEEc-CCCCcchHHHH-----hhCCCC--e--EEeeeecCCCCCCChhhHHHHHHcCCCCc
Q 012238          162 GSLRLAAALIERYFPGA-KVLIS-SPTWGNHKNIF-----NDARVP--W--SEYRYYDPKTVGLDFEGMIADIKAAPGGS  230 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd-~Vlv~-~P~y~~~~~~~-----~~~G~~--~--~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  230 (467)
                      +|.+.+.++.... .|. +|+.. .-+|..+....     ...|..  .  ..+.+  +   -.|++.+++.+++.+.+.
T Consensus       115 eA~e~AlklAr~~-tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~--~---~~d~~~l~~~l~~~~~~~  188 (431)
T PRK06209        115 DATSAAVRLARAY-TGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTF--R---YNDIASLEALFEDHPGRI  188 (431)
T ss_pred             HHHHHHHHHHHHH-hCCCeEEEeccCccccccccccccCCCCCCCChhHhcccccc--C---CCCHHHHHHHHHhCCCCE
Confidence            9999986654333 344 55544 22332111000     000110  0  00111  0   137899999887543344


Q ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCC
Q 012238          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA  310 (467)
Q Consensus       231 ~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G  310 (467)
                      .++++-.   -.|...+.+.+++|.++|++||+++|+||+..++....     ..........++   +..++|.+| .|
T Consensus       189 aavi~Ep---v~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~-----~g~~~~~gv~PD---i~t~gK~lg-gG  256 (431)
T PRK06209        189 ACVILEP---ATADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHM-----RGAQKLYGIVPD---LSCFGKALG-NG  256 (431)
T ss_pred             EEEEEcc---ccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc-----chhhHHhCCCcc---eeeehhhhc-CC
Confidence            4555432   23557788999999999999999999999977664321     111111122223   256799998 68


Q ss_pred             CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh--cc----CccCCCchHHHHHHHHHhC---ChhhHHHHHHHHHHHH
Q 012238          311 ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL--AR----PMYSNPPVHGARIVANVVG---NPALFDEWKAEMEMMA  381 (467)
Q Consensus       311 ~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~--~~----~~~~~~~~~~~~~~~~~L~---~~~~~~~~~~~l~~~~  381 (467)
                      +.+|+++   .++++++.        +.  +...  .+    ..+.+++.+...++...|+   +..+       +++..
T Consensus       257 ~p~~av~---~~~~i~~~--------~~--~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~-------~~~~~  316 (431)
T PRK06209        257 FAVSALA---GKREYMEL--------GG--LEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDV-------IERLH  316 (431)
T ss_pred             cccEEEE---EHHHHHhh--------hc--ccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCH-------HHHHH
Confidence            8888884   66665542        00  1000  11    1122333444444444332   2111       22222


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCcccccCCcceE--Eec--C---C-CH----HHHHHHHHcccEEEeCCCeEEeccCCh
Q 012238          382 GRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF--SFT--G---L-NK----AQSDNMTNKWHVYMTKDGRISLAGLSL  449 (467)
Q Consensus       382 ~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f--~~~--~---l-~~----~~~~~ll~~~gI~v~~ggRis~~~~~~  449 (467)
                      +.-+..++.+.+... ++++..   .....|.+.  .++  +   . ..    .+.+++++ +||++.+ =+|+... ++
T Consensus       317 ~~g~~l~~~L~~~~~-~~~~~~---~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~p~-l~is~~h-t~  389 (431)
T PRK06209        317 EQGAKLAAGVNEAAA-EHGLQD---HVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIR-RGVLMPS-LVVSYAH-GD  389 (431)
T ss_pred             HHHHHHHHHHHHHHH-hCCCCe---EEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHH-CCccccc-ccccccC-CH
Confidence            323333333333333 344311   111122222  111  1   1 11    22445555 5998743 2555433 88


Q ss_pred             hhHHHHHHHHHHHHHhc
Q 012238          450 AKCEYLADAIIDSYHNV  466 (467)
Q Consensus       450 ~~i~~~~~~l~~~l~~~  466 (467)
                      +++++++++|.+++..+
T Consensus       390 ~dId~~l~~l~~~l~~~  406 (431)
T PRK06209        390 ADIERTIDAVHGALGVY  406 (431)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998754

>PLN02452 phosphoserine transaminase

Probab=99.37  E-value=4.8e-10  Score=110.87  Aligned_cols=326  Identities=15%  Similarity=0.090  Sum_probs=185.5

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-C-------CCCcCCC--CcchHHHHHHHHHHHhCCCCcccccC-c
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-G-------ENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQ-R  151 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~-------~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~-~  151 (467)
                      .++++|+.|       +..+|+.|++++...+.+ .       ......+  ..-..+.++.+.+++...      .+ +
T Consensus         6 ~~~~~f~pG-------P~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p------~~y~   72 (365)
T PLN02452          6 GRVFNFSAG-------PATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIP------DNYE   72 (365)
T ss_pred             CceEeeeCC-------CCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCC------CCce
Confidence            357889866       233578888887765311 0       0011111  122455556666665421      22 3


Q ss_pred             eeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCc--chHHHHhhCCCCeEEeeeec-CCCCCCChhhHHHHHHcCCC
Q 012238          152 VATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWG--NHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAPG  228 (467)
Q Consensus       152 i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~--~~~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~~l~~~~~  228 (467)
                      +++ ...|||.+++.+  ++..+.+||++++...+..  .+.+.++.+|...+.....+ +....++++++    +. ++
T Consensus        73 v~~-l~Gsgt~~~ea~--~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~----~~-~~  144 (365)
T PLN02452         73 VLF-LQGGASTQFAAI--PLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEW----EL-TP  144 (365)
T ss_pred             EEE-EeCccHHHHHHH--HHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHc----CC-CC
Confidence            444 268889999987  5666679998888876654  45667788887444432211 11224566654    22 24


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc
Q 012238          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (467)
                      ....+.+++....||+.+.  ++.++.      ++++|+|.+ +.+....++.+.+          .+++ .|..|++|+
T Consensus       145 ~~~~v~~~hnETstGv~~~--~~~~i~------~~~lvVDa~-Ss~g~~pidv~~~----------~v~~-~saqK~lGP  204 (365)
T PLN02452        145 DAKFVHICANETIHGVEFK--DYPDVG------NVPLVADMS-SNFLSKPVDVSKY----------GVIY-AGAQKNVGP  204 (365)
T ss_pred             CCcEEEECCCCCCCcEecC--cccccC------CCeEEEECC-ccccCcccCHHHc----------CEEE-EecccccCC
Confidence            5567777878888899533  133442      379999999 5555432221111          2343 589999999


Q ss_pred             CCCccceEEEecCCHHHHhhhh--hhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHH
Q 012238          309 YAERIGAMNVVCSSSDLAARCC--EVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIK  385 (467)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~l~~~~~~~~  385 (467)
                      +|  +|.++   ..++++++..  .+.+.++....+.  ..++..+|.....++..+|+.  +   .++ .++.+.++.+
T Consensus       205 ~G--l~~v~---vr~~~l~~~~~~~~~~~~~~~~~~~--~s~~~TP~v~~i~~l~~aL~~--l---~~~gGl~~~~~r~~  272 (365)
T PLN02452        205 SG--VTIVI---IRKDLIGNARPITPGMLDYKIHAEN--DSLYNTPPCFGIYMCGLVFED--L---LAQGGLKAMEKRNI  272 (365)
T ss_pred             CC--eEEEE---EcHHHHhhcccCCCchhhHHHHHhc--CCccCChhHHHHHHHHHHHHH--H---HHccCHHHHHHHHH
Confidence            99  47665   5566665411  1122222221111  122334555554555444421  1   012 3788999999


Q ss_pred             HHHHHHHHHhhhcc-CCCCCcccccC--CcceE-Ee--cCC--CHHHHHHHHHcccEEEeCCC------eEEe-ccCChh
Q 012238          386 NVRQKLFDSLSAKD-KSGKDWSFILR--QIGMF-SF--TGL--NKAQSDNMTNKWHVYMTKDG------RISL-AGLSLA  450 (467)
Q Consensus       386 ~~r~~l~~~l~~~~-g~~~~~~~~~~--~~g~f-~~--~~l--~~~~~~~ll~~~gI~v~~gg------Ris~-~~~~~~  450 (467)
                      ++.+++++.|+ +. |+-.  ....+  ...+. .|  .+.  ..+|.+ .++++|+...+|.      |+|. ..++.+
T Consensus       273 ~~a~~l~~~l~-~~~G~y~--~~~~~~~rs~~~vsF~~~~~~~~~~f~~-~~~~~g~~~~~G~r~~gg~R~s~yna~~~~  348 (365)
T PLN02452        273 RKADLLYDAID-ESNGFYV--CPVEKSVRSLMNVPFTLGGSELEAEFVK-EAAKAGMVQLKGHRSVGGMRASIYNAMPLA  348 (365)
T ss_pred             HHHHHHHHHHH-hCCCccc--CCCChHHhCCeEEEEEcCCchhHHHHHH-HHHHCCCcccCCccccCceEEECcCCCCHH
Confidence            99999999998 64 4311  11111  12222 22  222  233444 4455799999983      9984 557889


Q ss_pred             hHHHHHHHHHHHHHh
Q 012238          451 KCEYLADAIIDSYHN  465 (467)
Q Consensus       451 ~i~~~~~~l~~~l~~  465 (467)
                      +++.+++.+++.-++
T Consensus       349 ~v~~L~~~m~~f~~~  363 (365)
T PLN02452        349 GVEKLVAFMKDFQAK  363 (365)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999987654

>PLN02263 serine decarboxylase

Probab=99.37  E-value=7.6e-10  Score=111.34  Aligned_cols=300  Identities=12%  Similarity=0.034  Sum_probs=183.0

Q ss_pred             chHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeee
Q 012238          127 GLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRY  206 (467)
Q Consensus       127 G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~  206 (467)
                      +..++.+.+-+|+....|.+-+.-.=++  |+|||+++..+........+...|+++.-++..+..+++.+|.+++.+|+
T Consensus       130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~v--tsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~  207 (470)
T PLN02263        130 HSRQFEVGVLDWFARLWEIEKNEYWGYI--TNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDT  207 (470)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCeEEE--eCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEecc
Confidence            5667777777777655443211111244  89999999887333223335558889999999999999999999999998


Q ss_pred             ecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCC-----eeEEeccCCCCCCCCCCC
Q 012238          207 YDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNH-----IPFFDVAYQGFASGSLDN  281 (467)
Q Consensus       207 ~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~-----~li~Deay~~~~~~~~~~  281 (467)
                        +.++.+|++.|++++.+...++.+++.+.+..+||.+=+   +++|.++|+++|+     |+.+|.+|.++.....+ 
T Consensus       208 --d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDp---i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~-  281 (470)
T PLN02263        208 --LVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDD---LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVK-  281 (470)
T ss_pred             --CCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCC---HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcc-
Confidence              456789999999999864445677777889999999644   5677777999986     99999999887541110 


Q ss_pred             ChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHH---HHHhhccCc-cCCC--chH
Q 012238          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKS---QLKRLARPM-YSNP--PVH  355 (467)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~-~~~~--~~~  355 (467)
                      ....+ .+..  .-.=+.-+.+|.++.| ...|.+.  ...+ ..+.        +..   .+....... .+-.  ..+
T Consensus       282 ~~~~~-df~~--~vDSIsvD~HK~l~~P-~~cgvll--~R~~-~~~~--------~~~~~~Yl~~~d~ti~gSR~g~~al  346 (470)
T PLN02263        282 RAPKV-TFKK--PIGSVSVSGHKFVGCP-MPCGVQI--TRME-HINV--------LSSNVEYLASRDATIMGSRNGHAPI  346 (470)
T ss_pred             ccccc-CCCc--CccEEEECCccccCCC-cCEEEEE--Eehh-hHhh--------hccChHhhCCCCCCcCCCCCcHHHH
Confidence            11001 1111  1223356778988755 6677775  3332 2222        100   011100011 1111  122


Q ss_pred             HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEE
Q 012238          356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVY  435 (467)
Q Consensus       356 ~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~  435 (467)
                      ..++....+.        .+.++++.++..++.+++.+.|+ +.|+   ..+..|.....+|...+.+.   ..+++.+.
T Consensus       347 ~lW~~L~~~G--------~~G~~~~i~~~~~~A~~l~~~l~-~~g~---~~~~~p~s~~V~f~~p~~~~---~~~gW~L~  411 (470)
T PLN02263        347 FLWYTLNRKG--------YRGFQKEVQKCLRNAHYLKDRLR-EAGI---SAMLNELSSTVVFERPKDEE---FVRRWQLA  411 (470)
T ss_pred             HHHHHHHHhC--------HHHHHHHHHHHHHHHHHHHHHHH-hCCC---eEEeCCCceEEEEecCchHH---hhcceEEc
Confidence            2222222222        24466777777788889999998 7764   33455665555554333222   12334333


Q ss_pred             EeCCC-eEEecc-CChhhHHHHHHHHHHHHH
Q 012238          436 MTKDG-RISLAG-LSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       436 v~~gg-Ris~~~-~~~~~i~~~~~~l~~~l~  464 (467)
                      ..+.- +|.+.. .+.+.++++++.|++..+
T Consensus       412 ~~~~~~Hivvmphv~~~~id~fi~DL~~~~~  442 (470)
T PLN02263        412 CQGNIAHVVVMPSVTIEKLDYFLKELVEKRS  442 (470)
T ss_pred             cCCCcEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence            33322 777654 467889999999988765

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.37  E-value=1.6e-09  Score=102.89  Aligned_cols=311  Identities=17%  Similarity=0.163  Sum_probs=187.2

Q ss_pred             hHHHHHHHHHHHhcC-----CCCc-CCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCC
Q 012238          103 LDVVKKAENLMLERG-----ENKE-YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP  176 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~-----~~~~-Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~  176 (467)
                      .|.|++|+.+.++..     -..+ -+...-.-+|.+.+|++ +++      +.-+++   .+.--|....+..++...|
T Consensus       187 Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~L-HqK------~aALlF---sSCfVANDstLftLak~lp  256 (570)
T KOG1360|consen  187 HPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADL-HQK------EAALLF---SSCFVANDSTLFTLAKKLP  256 (570)
T ss_pred             ChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHH-hcC------cceeee---eeeeeccchHHHHHHHHCC
Confidence            578888888877431     0011 11122346788888888 555      223333   1211112222113455668


Q ss_pred             CCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC-CCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012238          177 GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-PGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (467)
Q Consensus       177 gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~~~~~~~l~~l~  255 (467)
                      |-.+.--+--+.....-++..|++-..+..       .|++.|++.++.. +..+++|..-+.+.-+|.+-+.|   +|+
T Consensus       257 gcei~SD~gNHASMI~GIrns~v~K~IFrH-------ND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavcple---elc  326 (570)
T KOG1360|consen  257 GCEIFSDEGNHASMIQGIRNSRVPKHIFRH-------NDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLE---ELC  326 (570)
T ss_pred             CcEEeccccchHHHHHHhhhcCCcceeecc-------CCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHH---HHH
Confidence            876665555444555555666665444433       5899999999875 35678888899999999988866   788


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCC---ChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhh
Q 012238          256 DVIQEKNHIPFFDVAYQGFASGSLDN---DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEV  332 (467)
Q Consensus       256 ~~~~~~~~~li~Deay~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~  332 (467)
                      +++++||.+-++||++.--.||....   +...+     ...-.|+.+++.|.||+-|   |||   ++...+++.    
T Consensus       327 Dvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGv-----m~kvDiIsGTLgKafGcVG---GYI---Aat~~LvDm----  391 (570)
T KOG1360|consen  327 DVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGV-----MHKVDIISGTLGKAFGCVG---GYI---AATRKLVDM----  391 (570)
T ss_pred             HHHHHhCceeeeehhhhhccccCCCCCccccCCc-----chhhhhcccchhhhccccc---cee---hhhhhHHHH----
Confidence            88999999999999975433432100   00011     1123578999999999887   998   488889998    


Q ss_pred             hHHHHHHHHHhhccCccCCCchHHHHHHHH--HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccC
Q 012238          333 AVIQVKSQLKRLARPMYSNPPVHGARIVAN--VVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR  410 (467)
Q Consensus       333 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~  410 (467)
                          +++.....+- .++-||.+...+...  +|..        ++-+..++..+++-.++.+.|. +.|+|    +++.
T Consensus       392 ----iRSyAaGFIF-TTSLPP~vl~GAleaVr~lk~--------~eg~~lR~~hqrnv~~~kq~l~-~~GiP----Vi~~  453 (570)
T KOG1360|consen  392 ----IRSYAAGFIF-TTSLPPMVLAGALEAVRILKS--------EEGRVLRRQHQRNVKYVKQLLM-ELGIP----VIPN  453 (570)
T ss_pred             ----HHHhcCceEE-ecCCChHHHHhHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHH-HcCCc----ccCC
Confidence                4443222111 133444443333222  2221        1234556666677788888888 88864    3333


Q ss_pred             Ccc-eEEecC---CCHHHHHHHHHcccEEEeCC-------C----eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          411 QIG-MFSFTG---LNKAQSDNMTNKWHVYMTKD-------G----RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       411 ~~g-~f~~~~---l~~~~~~~ll~~~gI~v~~g-------g----Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ..- .-+.++   ++.+.++.|+.+++|++-.-       |    ||.-+. .+++-++.+++++..+.+++
T Consensus       454 pSHIiPv~vgda~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v  525 (570)
T KOG1360|consen  454 PSHIIPVRVGDAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEV  525 (570)
T ss_pred             CcceeeeeccCHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            322 223333   24556888999999998442       4    554332 26677888888888887654

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.37  E-value=5.7e-10  Score=110.39  Aligned_cols=265  Identities=14%  Similarity=0.083  Sum_probs=158.6

Q ss_pred             cCCchhHHHHHHHHHHHh-CCCCEEEEcCCCCcc-hH-HHHhhCCC-CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEE
Q 012238          157 GLSGTGSLRLAAALIERY-FPGAKVLISSPTWGN-HK-NIFNDARV-PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~-~~gd~Vlv~~P~y~~-~~-~~~~~~G~-~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~  232 (467)
                      +.+||++++.+  +...+ .+||+|++.. .|+. +. ++++.+|+ ++..+..  +.+..+|+++++.      .+.  
T Consensus        64 ~GsGT~a~Eaa--~~nl~~~~g~~vLv~g-~FG~r~~~eia~~~g~~~v~~l~~--~~g~~~~~~~ve~------~~~--  130 (374)
T TIGR01365        64 PASDTGAVEMA--LWSMLGCRGVDVLAWE-SFGKGWVTDVTKQLKLPDVRVLEA--EYGKLPDLKKVDF------KND--  130 (374)
T ss_pred             CCchHHHHHHH--HHHcCCCCCCeEEEEC-HHHHHHHHHHHHhcCCCCcEEEcC--CCCCCCCHHHcCC------CCC--
Confidence            89999999998  56666 3889999876 5543 35 88899999 4777765  5667789998862      122  


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHh-cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCC
Q 012238          233 LLHGCAHNPTGIDPTPEQWEKIADVIQE-KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (467)
Q Consensus       233 i~i~~p~NPTG~~~~~~~l~~l~~~~~~-~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~  311 (467)
                      +++++....||+..+.+   +++   ++ ++.++|+|.+ +.+.....+.+           .-.+++.|..|++++|+-
T Consensus       131 v~~vhnETSTGv~npv~---~i~---~~~~~~lliVDav-Ss~g~~~l~~d-----------~iDv~~tgsQK~L~~ppG  192 (374)
T TIGR01365       131 VVFTWNGTTSGVRVPNG---DFI---PADREGLTICDAT-SAAFAQDLDYH-----------KLDVVTFSWQKVLGGEGA  192 (374)
T ss_pred             EEEecCCCchheecccc---ccc---cccCCCcEEEEcc-chhcCCCCChh-----------HCcEEEEechhccCCCCc
Confidence            34677778889999874   443   32 5899999999 44543322211           134667777898887651


Q ss_pred             ccceEEEecCCHHHHhhhhh--h--hHHHHHH---H---HHhhccCccC-CCchHHHHHHHHHhCChhhHHHHHH-HHHH
Q 012238          312 RIGAMNVVCSSSDLAARCCE--V--AVIQVKS---Q---LKRLARPMYS-NPPVHGARIVANVVGNPALFDEWKA-EMEM  379 (467)
Q Consensus       312 RiG~~~~v~~~~~~~~~~~~--~--~~~~~~~---~---l~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~-~l~~  379 (467)
                       ++.++   .+++.+++...  .  .+..+.+   .   ........+. .++.....++..+|.     ...++ .++.
T Consensus       193 -ls~v~---vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~-----~i~~egGle~  263 (374)
T TIGR01365       193 -HGMLI---LSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALK-----WAESIGGLKP  263 (374)
T ss_pred             -eEEEE---ECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHH-----HHHHccCHHH
Confidence             34443   45555554110  0  0001100   0   0001111122 233333333333331     11112 3889


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCcccccC----Ccc--e-EEec-C-C-----C-----HHHHHHHHHcccEEEeCCC
Q 012238          380 MAGRIKNVRQKLFDSLSAKDKSGKDWSFILR----QIG--M-FSFT-G-L-----N-----KAQSDNMTNKWHVYMTKDG  440 (467)
Q Consensus       380 ~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~----~~g--~-f~~~-~-l-----~-----~~~~~~ll~~~gI~v~~gg  440 (467)
                      +.+|++++.+.+++.++ ++|.   +.....    .+.  . +.+. + +     +     .+.+...++++||.+.+|.
T Consensus       264 ~~~Rh~~~a~~l~~~l~-~lg~---l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~  339 (374)
T TIGR01365       264 LIARADDNLAVLEAFVA-KNNW---IHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGS  339 (374)
T ss_pred             HHHHHHHHHHHHHHHHH-HCCC---cccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccc
Confidence            99999999999999999 8883   122221    111  1 1121 2 3     1     3446666666799998772


Q ss_pred             --------eEE-eccCChhhHHHHHHHHHHHHHh
Q 012238          441 --------RIS-LAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       441 --------Ris-~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                              ||+ ++.++.++++.+++.|.=+...
T Consensus       340 ~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~~  373 (374)
T TIGR01365       340 YRDAPSGLRIWCGATVEKSDLECLCPWLDWAFAL  373 (374)
T ss_pred             cccCCCceEEecCCcCCHHHHHHHHHHHHHHHhc
Confidence                    996 6778999999999999766543

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.37  E-value=1.3e-09  Score=111.09  Aligned_cols=340  Identities=11%  Similarity=0.019  Sum_probs=173.8

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHH--HHHHHHhcC-----CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceee
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKK--AENLMLERG-----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~--a~~~~~~~~-----~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      +.+.||+..|.--..-|.  -.|.|.+  ++.+.+..-     ....| ......++-+.+++.....     .-+++.+
T Consensus        44 G~~ylD~~~g~~~~~lGh--~~p~v~~~~ai~~ql~~l~~~~~~~~~~-~~~~~~~la~~l~~~~~p~-----~~~~v~f  115 (443)
T PRK08297         44 GRRYLDMFTFFASSALGM--NHPALADDPEFRAELGRAALNKPSNSDV-YTVEMARFVDTFARVLGDP-----ELPHLFF  115 (443)
T ss_pred             CCEeeecccCHhhhcCCC--CChHHhhHHHHHHHHHHhhhhccccCCc-CCHHHHHHHHHHHhhcCCC-----CCCEEEE
Confidence            457889877744222233  2566666  666655321     11122 2223334444444442111     1358888


Q ss_pred             eecCCchhHHHHHHHHHHHhC------CC------CEEEEcCCCCcchHHHHh-hCCCCeE-----------Eeeeec--
Q 012238          155 VQGLSGTGSLRLAAALIERYF------PG------AKVLISSPTWGNHKNIFN-DARVPWS-----------EYRYYD--  208 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~------~g------d~Vlv~~P~y~~~~~~~~-~~G~~~~-----------~v~~~~--  208 (467)
                        +++|++|.+.+.++.....      .|      .+|+...-+|.+...... ..|....           .++...  
T Consensus       116 --~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (443)
T PRK08297        116 --VDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLR  193 (443)
T ss_pred             --eCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCC
Confidence              9999999999866543331      12      579999988876543322 2221100           011000  


Q ss_pred             ----CCC----C---CCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238          209 ----PKT----V---GLDFEGMIADIKAAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFAS  276 (467)
Q Consensus       209 ----~~~----~---~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~  276 (467)
                          ..+    .   .-+++.+++.+...+.+...+++...+--.|.. ++.+.+++|.++|++||+++|.||++.+|.-
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGR  273 (443)
T PRK08297        194 FPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGL  273 (443)
T ss_pred             CCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCc
Confidence                000    0   012455566676544566666665544444554 6788999999999999999999999988743


Q ss_pred             CCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHH-hhccCccCCCchH
Q 012238          277 GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLK-RLARPMYSNPPVH  355 (467)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~  355 (467)
                      .+   ..+.. ....-.++++   .|+|.++     +|.++  ++ .++.+.        ....+. ......+.+.+.+
T Consensus       274 tG---~~~a~-~~~gv~PDiv---~~gK~l~-----~~a~l--~~-~~i~~~--------~~~~~~~~~~~~~T~~gnpl  330 (443)
T PRK08297        274 TG---TAWAY-QQLGVRPDIV---AFGKKTQ-----VCGIM--AG-RRVDEV--------EDNVFAVSSRINSTWGGNLV  330 (443)
T ss_pred             cc---hHHHH-HhcCCCCCEE---Eeccccc-----cccee--cc-hHHHHh--------hhhhccCccccCCCCCccHH
Confidence            21   12222 1112233444   3689874     23332  23 332221        000011 0111123344555


Q ss_pred             HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccCCCCCcccccCCcceEEecCC-C----HHHHHH
Q 012238          356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSFTGL-N----KAQSDN  427 (467)
Q Consensus       356 ~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f~~~~l-~----~~~~~~  427 (467)
                      +..++...|+-  +    ++  +...++.+++-+++.+.|++   +.+.  ....+...|. ++.+.+ +    ..+++.
T Consensus       331 ~~aaa~a~L~~--l----~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~--~~~~vrg~G~-~~~i~~~~~~~~~~~~~~  399 (443)
T PRK08297        331 DMVRARRILEV--I----EE--DGLVENAARQGEYLLARLEELAAEFPA--VVSNVRGRGL-MCAFDLPTTADRDEVIRR  399 (443)
T ss_pred             HHHHHHHHHHH--H----Hh--cCHHHHHHHHHHHHHHHHHHHHHHCCC--cceeeeccce-EEEEEecCHHHHHHHHHH
Confidence            55555555431  1    00  12233333334444444430   2221  0112234443 333322 2    234556


Q ss_pred             HHHcccEEEeCCC----eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          428 MTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       428 ll~~~gI~v~~gg----Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +++ +||++.++|    ||+.+ .++++++++++++|.++++++
T Consensus       400 l~~-~Gvl~~~~~~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~  442 (443)
T PRK08297        400 LWE-EGVLVLPCGERSIRFRPALTVTTEEIDAAIDALRRALPEV  442 (443)
T ss_pred             HHH-CCEEEecCCCCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence            664 699998875    66432 238899999999999999865

>PLN02590 probable tyrosine decarboxylase

Probab=99.36  E-value=2.6e-09  Score=110.16  Aligned_cols=338  Identities=10%  Similarity=0.047  Sum_probs=195.2

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccc-----cCceeeeecCCchhHHHHHHHHHHH--h-
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK-----EQRVATVQGLSGTGSLRLAAALIER--Y-  174 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~-----~~~i~~~~t~ggt~al~l~~~~l~~--~-  174 (467)
                      +..+-+.+...++.. ...|...++..++.+.+.+|+.+..|.+-.     ...=++  +.|||+|...+......  . 
T Consensus       144 ~~~lgd~l~sa~n~~-~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~--~sGgSeAnl~al~aAR~~~~~  220 (539)
T PLN02590        144 AGFLGEMLNAGLSVV-GFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVI--QGTGCEAVLVVVLAARDRILK  220 (539)
T ss_pred             HHHHHHHHHHhcccc-cCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEE--cCchHHHHHHHHHHHHHHHHh
Confidence            344444455554432 245555667778888888888766654321     122344  79999988765222111  0 


Q ss_pred             ------CCCCEEEEcCCCCcchHHHHhhCCC---CeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCC
Q 012238          175 ------FPGAKVLISSPTWGNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPT  242 (467)
Q Consensus       175 ------~~gd~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~p~NPT  242 (467)
                            .+.-.|++++-++......++.+|+   .++.+|++...++.+|++.|++++++.   ...+.+|+-+.+...|
T Consensus       221 ~~g~~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~t  300 (539)
T PLN02590        221 KVGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSS  300 (539)
T ss_pred             hhcccCCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCC
Confidence                  0222566677888889999999998   588888854456889999999999752   2346777777788899


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC-eEEEEecCccCcccCCCccceEEEecC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM-ELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      |.+   +.+++|+++|++||+|+.+|.+|.++..-.+     ..+.+...-+ -.=+.-+++|.+..| .-.|.+.  +.
T Consensus       301 Gai---Dpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~-----~~r~~~~Gie~ADSit~D~HK~l~~p-~~cg~ll--vr  369 (539)
T PLN02590        301 AAV---DPLVPLGNIAKKYGIWLHVDAAYAGNACICP-----EYRKFIDGIENADSFNMNAHKWLFAN-QTCSPLW--VK  369 (539)
T ss_pred             ccc---CCHHHHHHHHHHhCCeEEEecchhhhhhcCh-----hhHHHhcCCccCCEEEECchhhcCcC-cCEEEEE--ec
Confidence            985   4566888889999999999999998764211     1222322211 223456788988744 5567664  35


Q ss_pred             CHH-HHhh-hhhhhHHHHHH-H------HHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          322 SSD-LAAR-CCEVAVIQVKS-Q------LKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  392 (467)
Q Consensus       322 ~~~-~~~~-~~~~~~~~~~~-~------l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~  392 (467)
                      ++. +.+. ..++.|..... .      +....-.......++..+++...+.        .+.++++.++.-+..+++.
T Consensus       370 ~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G--------~~G~~~~i~~~~~lA~~~~  441 (539)
T PLN02590        370 DRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYG--------SENLRNFIRDHVNLAKHFE  441 (539)
T ss_pred             CHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence            443 2222 00000000000 0      0000000000011111122211111        3446677777778888899


Q ss_pred             HHhhhccCCCCCcccccC-CcceEEec--C--CC--------HHHHHHHHHcccEEEeCC---C----eEEeccC--Chh
Q 012238          393 DSLSAKDKSGKDWSFILR-QIGMFSFT--G--LN--------KAQSDNMTNKWHVYMTKD---G----RISLAGL--SLA  450 (467)
Q Consensus       393 ~~l~~~~g~~~~~~~~~~-~~g~f~~~--~--l~--------~~~~~~ll~~~gI~v~~g---g----Ris~~~~--~~~  450 (467)
                      +.++ +.+   .|+++.+ .-+..+|-  +  .+        .++.+++.+...+++.+.   |    |+++.+.  +++
T Consensus       442 ~~l~-~~~---~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~  517 (539)
T PLN02590        442 DYVA-QDP---SFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEK  517 (539)
T ss_pred             HHHh-cCC---CeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHH
Confidence            8888 653   2565443 33333332  1  12        233445555545555553   4    9988653  668


Q ss_pred             hHHHHHHHHHHHHHhc
Q 012238          451 KCEYLADAIIDSYHNV  466 (467)
Q Consensus       451 ~i~~~~~~l~~~l~~~  466 (467)
                      +++.+++.|.+...++
T Consensus       518 dv~~~~~~i~~~a~~~  533 (539)
T PLN02590        518 HVTEAWQIIQKHASKF  533 (539)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999876653

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.35  E-value=5.5e-09  Score=106.96  Aligned_cols=340  Identities=11%  Similarity=0.007  Sum_probs=177.9

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCc--CCCCcchHHHHHHHHHHHhCCCCcccc-cCceeeeec-
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE--YLPIEGLAAFNKVTAELLFGADNSVLK-EQRVATVQG-  157 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~--Y~~~~G~~~lr~aia~~l~~~~~~~~~-~~~i~~~~t-  157 (467)
                      +...||+..|.--..-|.  -.|.|.+++.+.++......  +.+.....+|-+.+++.+-.    ... .+.+++  + 
T Consensus        62 G~~ylD~~~g~~~~~lGh--~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~----~~~~~~~v~f--~~  133 (464)
T PRK06938         62 GRQFIDCLAGAGTLALGH--NHPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFASLPE----AFAREAKIQF--CG  133 (464)
T ss_pred             CCEEEEccCCccccccCC--CCHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHHhCcc----cccccceEEE--eC
Confidence            457899987754222233  36788888888775322111  11222222333333333211    111 124544  4 


Q ss_pred             CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-hhCCC------------CeEEeeeecCC--CCC--------C
Q 012238          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDARV------------PWSEYRYYDPK--TVG--------L  214 (467)
Q Consensus       158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~-~~~G~------------~~~~v~~~~~~--~~~--------~  214 (467)
                      ++|++|.+.+.++........+|+...-+|.+..... ...|.            .+..+|.....  .++        .
T Consensus       134 ~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  213 (464)
T PRK06938        134 PTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRA  213 (464)
T ss_pred             CCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHH
Confidence            7999999998665444433468888888887654322 21110            12233321110  000        1


Q ss_pred             ChhhHHHHHHcCC---CCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH
Q 012238          215 DFEGMIADIKAAP---GGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA  290 (467)
Q Consensus       215 d~~~l~~~l~~~~---~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~  290 (467)
                      +.+.+++.+++..   .....+++-.-+--.|.+ ++.+-++++.++|++||+++|.||+..+|.-.+   ..+.. ...
T Consensus       214 ~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG---~~~a~-e~~  289 (464)
T PRK06938        214 NLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTG---KMFAF-EHA  289 (464)
T ss_pred             HHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---HHHHH-Hhc
Confidence            3567777776421   234555555444444664 468899999999999999999999988884221   12222 111


Q ss_pred             hcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhH
Q 012238          291 TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALF  370 (467)
Q Consensus       291 ~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~  370 (467)
                      .-.+++++   ++|.++ .|+.+|.++   ..+++ +.            +.......+.+.+.++..++.+.|+-  +.
T Consensus       290 gv~PDiv~---~gKglg-gG~PlsAv~---~~~~~-~~------------~~~~~~~~T~~gnpla~Aaa~a~L~~--l~  347 (464)
T PRK06938        290 GIIPDVVV---LSKAIG-GSLPLAVVV---YREWL-DT------------WQPGAHAGTFRGNQMAMAAGSATLRY--IK  347 (464)
T ss_pred             CCCCCEEE---eecccc-CCCceEEEe---ehhHh-hc------------cCCCCCCCCCCcCHHHHHHHHHHHHH--HH
Confidence            22345444   389998 789999985   54443 44            22111122334555555565555431  11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh---ccCCCCCcccccCCcceEEecCC---------------CH----HHHHHH
Q 012238          371 DEWKAEMEMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSFTGL---------------NK----AQSDNM  428 (467)
Q Consensus       371 ~~~~~~l~~~~~~~~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f~~~~l---------------~~----~~~~~l  428 (467)
                      +      ++..++.++.-+++.+.|++   +.+.   +..+...|-++ -+.+               +.    .+...+
T Consensus       348 ~------~~l~~~~~~~G~~l~~~L~~l~~~~~~---i~~VrG~Glm~-gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (464)
T PRK06938        348 E------HRLAEHAAAMGERLREHLRQLQRDYPQ---LGDVRGRGLML-GVEIVDPQGEPDALGHPPANGELASLIQREC  417 (464)
T ss_pred             H------hHHHHHHHHHHHHHHHHHHHHHHhCCC---eeeeeccceEE-EEEeccCcccccccccCCccHHHHHHHHHHH
Confidence            1      12223333333444444430   2221   11222333322 1111               11    124455


Q ss_pred             HHcccEEEeCCC------eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          429 TNKWHVYMTKDG------RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       429 l~~~gI~v~~gg------Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ++ +||++.++|      ||... .+++++++++++++.+++.++
T Consensus       418 ~~-~Gll~~~~g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~  461 (464)
T PRK06938        418 LR-RGLILELGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAAA  461 (464)
T ss_pred             HH-CCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence            54 699997743      55422 248899999999999998753

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.35  E-value=3.5e-10  Score=118.68  Aligned_cols=178  Identities=11%  Similarity=0.016  Sum_probs=117.5

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEE
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSE  203 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~  203 (467)
                      |..-+.+..+.+|+.++..       .-.++  ++|+|.++..+  +++.+.+||+|++...|+-.....+...|+.+++
T Consensus       193 ~~G~i~eAe~~aA~~fgAd-------~tyfv--vNGTS~~n~av--~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVY  261 (713)
T PRK15399        193 HTGPHLEAEEYIARTFGAE-------QSYIV--TNGTSTSNKIV--GMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIW  261 (713)
T ss_pred             CChHHHHHHHHHHHHhCCC-------cEEEE--eCChHHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEE
Confidence            3434566666667764332       23444  79999999887  6778889999999999998888899999999999


Q ss_pred             eeee-cCC--CCCCCh-----hhHHHHHHcCCCC--cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee-EEeccCC
Q 012238          204 YRYY-DPK--TVGLDF-----EGMIADIKAAPGG--SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP-FFDVAYQ  272 (467)
Q Consensus       204 v~~~-~~~--~~~~d~-----~~l~~~l~~~~~~--~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~l-i~Deay~  272 (467)
                      ++.. ++.  -++++.     +.+++.+++.+..  ++.+++++| +--|++++.+++.++   |   |+.+ ++||||.
T Consensus       262 l~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~---~---g~~~ilvDEAhg  334 (713)
T PRK15399        262 LKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQT---L---DVPSIHFDSAWV  334 (713)
T ss_pred             ecccccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHH---h---CCCEEEEeccch
Confidence            8542 111  124555     8999999876432  245666554 344999998765555   5   5655 6999986


Q ss_pred             CC-CCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          273 GF-ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       273 ~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      .. .|.+.-.+..++......+..++++.|.+|.+  +|+.-+.++++.+
T Consensus       335 ah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL--~alTQaS~iHvk~  382 (713)
T PRK15399        335 PYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKML--AAFSQASLIHIKG  382 (713)
T ss_pred             hhhhcCcccCCcChhhCCCCCCeeeeeeeehhccc--cccchheeeeecC
Confidence            44 33321111222210001223567799999997  6788888877644

>PRK06149 hypothetical protein; Provisional

Probab=99.34  E-value=1.3e-09  Score=121.14  Aligned_cols=336  Identities=13%  Similarity=0.088  Sum_probs=180.1

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCC-cCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK-EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~-~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +...||+..|..    ..-+-.|.|.+++.+.+...... .| ......+|-+.+++.+-..      -+.+++  +++|
T Consensus       584 G~~ylD~~~~~~----~lGh~hp~v~~Ai~~q~~~l~~~~~~-~~~~~~elae~L~~~~p~~------~~~v~f--~~SG  650 (972)
T PRK06149        584 GRSYLDMVNNVT----VLGHGHPRLAAAAARQWSLLNTNSRF-HYAAVAEFSERLAALAPDG------LDTVFL--VNSG  650 (972)
T ss_pred             CCEEEECCCCcc----ccCCCCHHHHHHHHHHHHhccccccc-cCHHHHHHHHHHHHhCCCC------cCEEEE--eCCc
Confidence            457899987643    22223677888887776542211 12 2223445555555553111      247888  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-hhCC-------C------CeEEeeeecCC--CCC-CC-----hhh
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDAR-------V------PWSEYRYYDPK--TVG-LD-----FEG  218 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~-~~~G-------~------~~~~v~~~~~~--~~~-~d-----~~~  218 (467)
                      ++|.+.+.++...+....+|+...-+|.+..... ...+       .      .+..++..+..  .+. .|     .+.
T Consensus       651 sEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~  730 (972)
T PRK06149        651 SEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRD  730 (972)
T ss_pred             hHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHH
Confidence            9999998665444444467888888887543211 0000       0      01222221000  011 11     234


Q ss_pred             HHHHHHc---CCCCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012238          219 MIADIKA---APGGSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (467)
Q Consensus       219 l~~~l~~---~~~~~~~i~i~~p~NPTG-~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~  294 (467)
                      +++.++.   .+.+...+++-....-.| ...+.+-++++.++|++||+++|+||+..+|.-.+  ...+....+ .-.+
T Consensus       731 ~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG--~~~~a~e~~-gv~P  807 (972)
T PRK06149        731 VVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLG--HYFWGFEQQ-GVVP  807 (972)
T ss_pred             HHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccC--ccchhhhhc-CCCC
Confidence            4444432   223444555444333334 55678889999999999999999999976774321  111222111 2223


Q ss_pred             eEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhcc-CccCCCchHHHHHHHHHhCChhhHHHH
Q 012238          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLAR-PMYSNPPVHGARIVANVVGNPALFDEW  373 (467)
Q Consensus       295 ~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~~~~~~~~~  373 (467)
                      +++   +++|.+| .|..+|+++   ..+++.+.            +..... ..+.+.+.++..++.+.|+-  +.+  
T Consensus       808 Div---t~gK~lg-~G~Pl~av~---~~~~i~~~------------~~~~~~~~sT~~gnP~~~aaala~L~~--i~~--  864 (972)
T PRK06149        808 DII---TMAKGMG-NGHPLGAVI---TRREIAEA------------LEAEGYFFSSTGGSPVSCRIGMAVLDV--LRE--  864 (972)
T ss_pred             CEE---Eeccccc-CCeeeEEEE---EcHHHHhh------------hccCCcccCCCCCCHHHHHHHHHHHHH--HHh--
Confidence            444   6799998 788899985   67777765            332100 11224555565666555531  110  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh---ccCCCCCcccccCCcceEEecCC---------C----HHHHHHHHHcccEEEe
Q 012238          374 KAEMEMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSFTGL---------N----KAQSDNMTNKWHVYMT  437 (467)
Q Consensus       374 ~~~l~~~~~~~~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f~~~~l---------~----~~~~~~ll~~~gI~v~  437 (467)
                          +...++.++.-++|.+.|++   +.++   +..+...| +++-+.+         +    ..+...+++ +||++.
T Consensus       865 ----e~l~~~~~~~G~~l~~~L~~l~~~~~~---i~~vrG~G-l~~gvel~~~~~~~~~~~~~~~~i~~~l~~-~Gvl~~  935 (972)
T PRK06149        865 ----EKLQENARRVGDHLKARLEALADRHPL---IGAVHGMG-LYLGVELVRDRQTLEPATEETAAICDRLLE-LGVIMQ  935 (972)
T ss_pred             ----cCHHHHHHHHHHHHHHHHHHHHHhCCC---eEEEeecc-eEEEEEEecCcccCCCChHHHHHHHHHHHh-CCeEEe
Confidence                12333444444444444440   2222   11222333 3321111         1    123455555 699998


Q ss_pred             CCC------eEEec-cCChhhHHHHHHHHHHHHHh
Q 012238          438 KDG------RISLA-GLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       438 ~gg------Ris~~-~~~~~~i~~~~~~l~~~l~~  465 (467)
                      +.|      ||... .++++++++++++|.+++.+
T Consensus       936 ~~g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~  970 (972)
T PRK06149        936 PTGDHLNILKIKPPLCLDRESADFFVDMLDRVLTE  970 (972)
T ss_pred             ecCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence            865      33322 24889999999999999875

>PRK07483 hypothetical protein; Provisional

Probab=99.33  E-value=3e-09  Score=108.45  Aligned_cols=340  Identities=12%  Similarity=0.093  Sum_probs=178.0

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +...||+..|..-..-|.  -.|.|.+++.+.++...  ...+...    +....+++.|......  .-+++.+  +++
T Consensus        29 G~~ylD~~~g~~~~~lGh--~~p~v~~av~~ql~~~~~~~~~~~~~----~~~~~lae~L~~~~p~--~~~~v~f--~~s   98 (443)
T PRK07483         29 GKRYLDASGGAAVSCLGH--SHPRVIAAIHAQIDRLAYAHTSFFTT----EPAEALADRLVAAAPA--GLEHVYF--VSG   98 (443)
T ss_pred             CCEEEEcCccHhhhccCC--CCHHHHHHHHHHHHhccCccccccCC----HHHHHHHHHHHHhCCC--CCCEEEE--cCC
Confidence            457899988744222232  36778888888876421  0111112    2333444444332110  1258888  999


Q ss_pred             chhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHH-HHhhCCC------------CeEEeeeecCCCC---CC---
Q 012238          160 GTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKN-IFNDARV------------PWSEYRYYDPKTV---GL---  214 (467)
Q Consensus       160 gt~al~l~~~~l~~~~-----~g-d~Vlv~~P~y~~~~~-~~~~~G~------------~~~~v~~~~~~~~---~~---  214 (467)
                      |++|.+.+.++...+.     +| .+|+...-+|..... .+...|-            .+..++.......   ..   
T Consensus        99 GsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  178 (443)
T PRK07483         99 GSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDE  178 (443)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHH
Confidence            9999999866655441     33 478888888865532 2211111            1112221000000   00   


Q ss_pred             -----ChhhHHHHHHc-CCCCcEEEEeCCCCC-CCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012238          215 -----DFEGMIADIKA-APGGSFILLHGCAHN-PTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (467)
Q Consensus       215 -----d~~~l~~~l~~-~~~~~~~i~i~~p~N-PTG-~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~  286 (467)
                           .++.+++.+.. .++....+++-..+- -.| ..++.+.+++|.++|++||+++|.||+..+|.-.+   ..+..
T Consensus       179 ~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG---~~~a~  255 (443)
T PRK07483        179 AYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTG---TLFAC  255 (443)
T ss_pred             HHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCc---HHHHH
Confidence                 02456665542 224455555554432 224 45678889999999999999999999988774221   12222


Q ss_pred             HHHHhcCCeEEEEecCccCcccCCC-ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh----ccCccCCCchHHHHHHH
Q 012238          287 RLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL----ARPMYSNPPVHGARIVA  361 (467)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~  361 (467)
                       ....-.+++++   ++|.++ .|+ .+|.++   ..+++.+.            +...    ....+.+.+.++..++.
T Consensus       256 -~~~gv~PDiv~---~gK~l~-gG~~Pi~av~---~~~~i~~~------------~~~~~~~~~h~~T~~gnpl~~aaa~  315 (443)
T PRK07483        256 -EEDGVAPDLVT---IAKGLG-AGYQPIGAVL---ASDRIYDA------------IADGSGFFQHGHTYLGHATACAAAL  315 (443)
T ss_pred             -hhcCCCCCeee---ehhhhc-cCccccEEEE---EcHHHHHH------------HhcCCCccccCCCCCCCHHHHHHHH
Confidence             11122344443   489998 785 888885   67777665            3321    11123344555555555


Q ss_pred             HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccCCCCCcccccCCcceEE-ec--C------CC------HH
Q 012238          362 NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFS-FT--G------LN------KA  423 (467)
Q Consensus       362 ~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f~-~~--~------l~------~~  423 (467)
                      +.|+-  +    ++  +...++.+++-++|.+.|++   +.+.   +..+...|-++- .+  +      .+      ..
T Consensus       316 a~l~~--i----~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~---i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~  384 (443)
T PRK07483        316 AVQRV--I----AE--DGLLANVRARGEQLRARLRERLGQHPH---VGDIRGRGLFVGVELVADRATKAPFDPALKLHAR  384 (443)
T ss_pred             HHHHH--H----Hh--cCHHHHHHHHHHHHHHHHHHHHhcCCC---eeeEeecccEEEEEEeecccccCCCCchhhHHHH
Confidence            55421  1    10  12333333444444444430   2221   112223333321 11  1      01      12


Q ss_pred             HHHHHHHcccEEEeCC--------C---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          424 QSDNMTNKWHVYMTKD--------G---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       424 ~~~~ll~~~gI~v~~g--------g---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +.+.+++ +||++.+.        |   ||.-. .++++++++++++|.++++++
T Consensus       385 ~~~~~~~-~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~  438 (443)
T PRK07483        385 IKREAMA-RGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAA  438 (443)
T ss_pred             HHHHHHH-CCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3445555 69998653        2   55432 248899999999999998764

>PRK06148 hypothetical protein; Provisional

Probab=99.31  E-value=2.7e-09  Score=118.80  Aligned_cols=337  Identities=12%  Similarity=0.042  Sum_probs=181.1

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC-CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +...||+..|..  .-|.  -.|.|.+++.+.+... ....| ......+|-+.+++.+-.      .-+.+.+  +++|
T Consensus       623 G~~ylD~~~g~~--~lGH--~hp~v~~Ai~~q~~~l~~~~~~-~~~~~~~lAe~L~~~~p~------~~~~v~f--~nSG  689 (1013)
T PRK06148        623 GRAYLDCFNNVC--HVGH--AHPRVVAAAARQAARLNTNTRY-LHDAIVAYAERLTATLPD------GLTVAFF--VNSG  689 (1013)
T ss_pred             CCEEEEcccChh--hcCC--CCHHHHHHHHHHHhhcCCcCCc-CCHHHHHHHHHHHHhCCC------CcCEEEE--eCCc
Confidence            357888877743  2232  3678888888877542 22233 233334444444444211      0257788  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-HhhCC-------C-----CeEEeeeecC--CCCC-CC-------hh
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-FNDAR-------V-----PWSEYRYYDP--KTVG-LD-------FE  217 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~-~~~~G-------~-----~~~~v~~~~~--~~~~-~d-------~~  217 (467)
                      ++|.+.+.++........+|+...-+|.+.... +...|       .     .+..++..+.  ..+. .|       .+
T Consensus       690 sEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  769 (1013)
T PRK06148        690 SEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAE  769 (1013)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHH
Confidence            999999866654444446899988888655321 11111       0     1111111000  0011 11       13


Q ss_pred             hHHHHHH---cCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012238          218 GMIADIK---AAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (467)
Q Consensus       218 ~l~~~l~---~~~~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (467)
                      .+++.++   ..+.....+++-..+--.|. ..+.+-++++.++|++||+++|.||+..+|.-.+  ...+....+ .-.
T Consensus       770 ~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG--~~~~a~e~~-gv~  846 (1013)
T PRK06148        770 SVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVG--SHWWAFETQ-GVV  846 (1013)
T ss_pred             HHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCC--Ccchhhhhc-CCC
Confidence            3554443   22234555555544433344 5578889999999999999999999987874221  111222111 222


Q ss_pred             CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc-cCccCCCchHHHHHHHHHhCChhhHHH
Q 012238          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA-RPMYSNPPVHGARIVANVVGNPALFDE  372 (467)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~L~~~~~~~~  372 (467)
                      ++++   +++|.+| .|+.+|.++   ..+++.+.            +..-. ...+.+.+.++..++.+.|+-  +   
T Consensus       847 PDiv---t~gK~lg-gG~Plgav~---~~~ei~~~------------~~~g~~~~~Tf~gnpla~aaa~a~L~~--i---  902 (1013)
T PRK06148        847 PDIV---TMGKPIG-NGHPMGAVV---TTREIADS------------FDNGMEYFNTFGGNPVSCAIGLAVLDI--I---  902 (1013)
T ss_pred             ccee---eeccccc-CCcceEEEE---EcHHHHhh------------ccCCCccccCCCCCHHHHHHHHHHHHH--H---
Confidence            3433   4589998 789999995   67777765            32211 112334555565565555431  1   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh---ccCCCCCcccccCCcceEEecCC---------C----HHHHHHHHHcccEEE
Q 012238          373 WKAEMEMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSFTGL---------N----KAQSDNMTNKWHVYM  436 (467)
Q Consensus       373 ~~~~l~~~~~~~~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f~~~~l---------~----~~~~~~ll~~~gI~v  436 (467)
                       ++  +...++.++.-++|.+.|++   +.+.   +..+...|- ++-+.+         +    ..+.+.+++ +||++
T Consensus       903 -~~--e~l~~~~~~~G~~l~~~L~~l~~~~~~---i~~VrG~Gl-~~gvel~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~  974 (1013)
T PRK06148        903 -ED--EDLQRNALEIGNYLLAGLRELQDRFDI---IGDVRGMGL-FLGIELVTDRKTKAPATAIARYVKNGARE-RGILI  974 (1013)
T ss_pred             -hh--ccHHHHHHHHHHHHHHHHHHHHHhCCC---ceEEeeece-EEEEEecCCccccCccHHHHHHHHHHHHh-CCeEE
Confidence             10  12333444444444554440   2222   111223333 322111         1    123445554 69999


Q ss_pred             eCCC------eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          437 TKDG------RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       437 ~~gg------Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .+.|      ||... .++++++++++++|.+++.++
T Consensus       975 ~~~g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148        975 GTEGPHDNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred             eccCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence            8754      55543 238899999999999998764

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.31  E-value=9.9e-09  Score=105.06  Aligned_cols=341  Identities=15%  Similarity=0.082  Sum_probs=174.6

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCc--CCCCcchHHHHHHHHHHHhCCCCccccc-CceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE--YLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~--Y~~~~G~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~  158 (467)
                      +.+.|||..|.....-|.  -.|.|.+++.+.+.......  +.+.    +.+..+|+.+.......... ..+++  ++
T Consensus        57 G~~ylD~~~g~~~~~lGH--~~p~v~~Ai~~q~~~~~~~~~~~~~~----~~~~~lAe~L~~~~p~~~~~~~~~f~--~~  128 (459)
T PRK06931         57 GNQYLDCLAGAGTLALGH--NHPDVLQSIQDVLTSGLPLHTLDLTT----PLKDAFSEYLLSLLPGQGKEYCLQFT--GP  128 (459)
T ss_pred             CCEEEEcccchhhccCCC--CCHHHHHHHHHHHhhhccccccccCC----HHHHHHHHHHHHhCCCccccceEEEe--CC
Confidence            458999988854222232  36788888888775422111  1122    33344455443321100001 12344  68


Q ss_pred             CchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CC------------CCeEEeeeecCCC--CC----CChhhH
Q 012238          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-AR------------VPWSEYRYYDPKT--VG----LDFEGM  219 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~-~G------------~~~~~v~~~~~~~--~~----~d~~~l  219 (467)
                      +|++|.+.+.++........+|+...-+|.+....... .|            -.+..+|..+...  +.    -+.+.+
T Consensus       129 SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (459)
T PRK06931        129 SGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKAL  208 (459)
T ss_pred             CcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHH
Confidence            99999999866654444446899899888766543331 11            1122233211100  00    122323


Q ss_pred             ----HHHHHc---CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh
Q 012238          220 ----IADIKA---APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT  291 (467)
Q Consensus       220 ----~~~l~~---~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~  291 (467)
                          ++.+..   .+++...+++-..+.-.|.. .+.+.++++.++|++||+++|.||+..+|.-.+   ..+... ...
T Consensus       209 ~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG---~~~a~~-~~g  284 (459)
T PRK06931        209 TYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTG---KMFAFE-HAG  284 (459)
T ss_pred             HHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCc---hHHHhh-hcC
Confidence                233321   12334555554444444654 578889999999999999999999988874221   122221 112


Q ss_pred             cCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHH
Q 012238          292 RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFD  371 (467)
Q Consensus       292 ~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~  371 (467)
                      -.+++++   ++|.++ .|+.+|.+.   ..++ ++.            +.......+.+.++++..++.+.|+-  +.+
T Consensus       285 v~PDivt---~gK~l~-gG~Pi~av~---~~~~-~~~------------~~~~~~~~T~~gnpla~aaala~L~~--l~~  342 (459)
T PRK06931        285 IEPDIIV---MSKAVG-GGLPLAVLG---IKKE-FDA------------WQPGGHTGTFRGNQLAMATGLTTLKI--LKE  342 (459)
T ss_pred             CCCCEEE---eccccc-CCcceeeee---eHHH-Hhh------------ccCCCCCCCCCCCHHHHHHHHHHHHH--HHh
Confidence            2344443   489998 789898763   4444 344            32111122334555665665555431  100


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh---ccCCCCCcccccCCcceEEe-c-CC------------CH----HHHHHHHH
Q 012238          372 EWKAEMEMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSF-T-GL------------NK----AQSDNMTN  430 (467)
Q Consensus       372 ~~~~~l~~~~~~~~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f~~-~-~l------------~~----~~~~~ll~  430 (467)
                            +...++.++.-++|.+.|++   +.+.   +..+...|.++-+ + .-            +.    .+...++ 
T Consensus       343 ------~~l~~~~~~~G~~l~~~L~~l~~~~~~---i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  412 (459)
T PRK06931        343 ------ENLAQNAAERGEWLKAQLAELQKRYPC---IGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACF-  412 (459)
T ss_pred             ------CCHHHHHHHHHHHHHHHHHHHHHhCCC---eEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHH-
Confidence                  01223333333334444430   2332   1222333333211 1 10            11    2233444 


Q ss_pred             cccEEEeCCC------eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          431 KWHVYMTKDG------RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       431 ~~gI~v~~gg------Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ++||++.++|      |+... .+++++++++++++.++++++
T Consensus       413 ~~Gvl~~~~~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~  455 (459)
T PRK06931        413 ENGLLLERGGRNGNVVRLLPPLLITQAECEEFIDRFEQALLAA  455 (459)
T ss_pred             HCCcEEeecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHHH
Confidence            4699997653      55433 238899999999999998753

>PRK07480 putative aminotransferase; Validated

Probab=99.30  E-value=4.1e-09  Score=107.76  Aligned_cols=343  Identities=12%  Similarity=0.036  Sum_probs=179.2

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCC----cCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeec
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK----EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~----~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (467)
                      +.+.||+..|..-..-|  +-.|.|.+++.+.++.....    .| +.....+|-+.+++.+..      .-+++.+  +
T Consensus        49 G~~ylD~~~g~~~~~lG--h~~p~v~~Ai~~q~~~~~~~~~~~~~-~~~~~~~lae~L~~~~p~------~~~~v~f--~  117 (456)
T PRK07480         49 GNKILDGMAGLWCVNVG--YGRKELADAAARQMRELPYYNTFFKT-THPPAIELAAKLAEVAPP------GFNHVFF--T  117 (456)
T ss_pred             CCEEEEccchHHHhcCC--CCCHHHHHHHHHHHHhcCCccccccc-CCHHHHHHHHHHHHhCCC------CcCEEEE--e
Confidence            45789998774311122  23677888888877542111    12 222233444444444211      1247888  9


Q ss_pred             CCchhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHH-HHhhCCCC------------eEEeeeecCC--CCCCC-
Q 012238          158 LSGTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKN-IFNDARVP------------WSEYRYYDPK--TVGLD-  215 (467)
Q Consensus       158 ~ggt~al~l~~~~l~~~~-----~g-d~Vlv~~P~y~~~~~-~~~~~G~~------------~~~v~~~~~~--~~~~d-  215 (467)
                      ++|++|.+.+.++.....     +| .+|+...-+|..... .+...|..            +..++.....  .+..+ 
T Consensus       118 ~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  197 (456)
T PRK07480        118 NSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTP  197 (456)
T ss_pred             CCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCCh
Confidence            999999999866554431     23 468888888865432 11111111            1111110000  00011 


Q ss_pred             -------hhhHHHHHHc-CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012238          216 -------FEGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (467)
Q Consensus       216 -------~~~l~~~l~~-~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~  286 (467)
                             .+.+++.+.. .+.+...+++-..+.-.|.. .+.+.+++|.++|++||+++|+||+..+|.-.+   ..+..
T Consensus       198 ~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~a~  274 (456)
T PRK07480        198 EEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTG---EWFGS  274 (456)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---chhhh
Confidence                   2555554532 23455566666555556775 566779999999999999999999988874221   11122


Q ss_pred             HHHHhcCCeEEEEecCccCcccCCC-ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhC
Q 012238          287 RLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVG  365 (467)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~  365 (467)
                      .. ..-.++++   .|+|.++ .|. .+|.++   ..+++.+.        +...-.......+.+.++++..++.+.|+
T Consensus       275 ~~-~gv~PDiv---~~gK~l~-gG~~Pi~av~---~~~~i~~~--------~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~  338 (456)
T PRK07480        275 QH-FGIKPDLM---TIAKGLT-SGYIPMGAVG---VGDRVAEV--------LIEEGGEFNHGFTYSGHPVAAAVALANLR  338 (456)
T ss_pred             hh-cCCCCCee---eeehhhc-cCCccceEEE---EcHHHHHH--------HhcCCCCcccCCCCCcCHHHHHHHHHHHH
Confidence            11 12223433   4689988 674 788885   67777665        21100011112233455566666665553


Q ss_pred             ChhhHHHHHHHHHHHHHHH-HHHHHHHHHHhhh--ccCCCCCcccccCCcceEEe--cCC--------C----HHHH-HH
Q 012238          366 NPALFDEWKAEMEMMAGRI-KNVRQKLFDSLSA--KDKSGKDWSFILRQIGMFSF--TGL--------N----KAQS-DN  427 (467)
Q Consensus       366 ~~~~~~~~~~~l~~~~~~~-~~~r~~l~~~l~~--~~g~~~~~~~~~~~~g~f~~--~~l--------~----~~~~-~~  427 (467)
                      -  +.+      +...++. +++-++|.+.|++  +.+.   +..+...|.++.+  ..-        .    ...+ ..
T Consensus       339 ~--l~~------~~l~~~~~~~~g~~l~~~l~~l~~~~~---i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~  407 (456)
T PRK07480        339 I--LRD------EGIVERVRDDTGPYLQKRLRELADHPL---VGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDH  407 (456)
T ss_pred             H--HHh------CCHHHHHHHHHHHHHHHHHHHhhcCCC---eeeEEeecceEEEEEeccccccccCcchhhHHHHHHHH
Confidence            1  110      1222333 2333444444430  2221   1122333333311  110        0    1223 34


Q ss_pred             HHHcccEEEeCCC---eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          428 MTNKWHVYMTKDG---RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       428 ll~~~gI~v~~gg---Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +++ +||++.+.|   ||+... ++++++++++++|.++++++
T Consensus       408 ~~~-~Gll~~~~~~~l~~~Ppl~it~~eid~~~~~l~~al~~~  449 (456)
T PRK07480        408 CFA-NGLIMRAVGDRMIISPPLVITHAEIDELVEKARKALDAT  449 (456)
T ss_pred             HHH-CCcEEeecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            454 699998765   666443 38899999999999998754

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.26  E-value=1.8e-09  Score=109.41  Aligned_cols=278  Identities=13%  Similarity=0.064  Sum_probs=172.5

Q ss_pred             CCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-hC--C
Q 012238          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YF--P  176 (467)
Q Consensus       100 p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~~--~  176 (467)
                      +.+++...+++...++.+. .......+..++.+.+..++....+.+-.. -=.+  |.|||+|+.++...... ..  .
T Consensus        72 ~~~~~~a~~~~~~~~~~nl-~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~-~G~~--t~GgTean~lal~aar~~~~~~~  147 (460)
T COG0076          72 TRVPPVAAELLVSALNKNL-GDPDESPAAAELEERVVNMLSDLLGAPEEA-SGTF--TSGGTEANLLALLAARERWRKRA  147 (460)
T ss_pred             CCCHHHHHHHHHHHHhhcC-CCcccChhHHHHHHHHHHHHHHHhCCCCCC-ceEE--EcChHHHHHHHHHHHHHHHHHHh
Confidence            3447778888888775542 212222366677777777776555443111 1233  89999999987433322 11  1


Q ss_pred             ---CC------EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q 012238          177 ---GA------KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPT  247 (467)
Q Consensus       177 ---gd------~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~  247 (467)
                         +.      +|+++.-.+..+...++.+|.....+++... +..+|++.+++++.+..... +|+-+.++.|||.+  
T Consensus       148 ~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g-~vV~~aGtT~~G~i--  223 (460)
T COG0076         148 LAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGG-VVVGTAGTTDTGSI--  223 (460)
T ss_pred             hhcccccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhhccCc-eEEEEecCCCCCcc--
Confidence               11      6999999999999999999999999999643 78899999999998632221 36667789999984  


Q ss_pred             HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHH-HH
Q 012238          248 PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD-LA  326 (467)
Q Consensus       248 ~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~-~~  326 (467)
                       +.+++|.++|+++++++.+|.||.++..--.+.+..   -......-.=+.-++.|.+. .=...||+.  ..+++ +.
T Consensus       224 -Ddi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~---~~f~l~~vdSIt~d~HK~g~-aP~~~G~il--~rd~e~l~  296 (460)
T COG0076         224 -DDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGR---WDFGLEGVDSITVDGHKYGL-APIGCGVVL--FRDEEALR  296 (460)
T ss_pred             -CCHHHHHHHHHHcCCcEEEEccccceeecccCccch---hhcCCCCceEEEECcccccC-CCCCceEEE--EECHHHhh
Confidence             556788888999999999999999887421111111   01111122344567889765 336689986  46664 33


Q ss_pred             hhhhhhhHHHHHHHHHhhccCccC---------CCc-----hHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          327 ARCCEVAVIQVKSQLKRLARPMYS---------NPP-----VHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  392 (467)
Q Consensus       327 ~~~~~~~~~~~~~~l~~~~~~~~~---------~~~-----~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~  392 (467)
                      +.            +. ...+...         ..+     .+.+.+....|.        .+.+.++.++..+..+++.
T Consensus       297 ~~------------~~-~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG--------~eGy~~l~~~~~~~a~~la  355 (460)
T COG0076         297 RI------------LI-FADYYLPGGGIPNFTILGSRPGRQALALYANLRRLG--------REGYRKLLDRTLELARYLA  355 (460)
T ss_pred             hh------------hh-cccccCCCCCcCceeEeeccchHHHHHHHHHHHHhC--------HhHHHHHHHHHHHHHHHHH
Confidence            32            11 1111111         111     112222222222        3446678888888899999


Q ss_pred             HHhhhccCCCCCccccc-CCcceEEe
Q 012238          393 DSLSAKDKSGKDWSFIL-RQIGMFSF  417 (467)
Q Consensus       393 ~~l~~~~g~~~~~~~~~-~~~g~f~~  417 (467)
                      +.|+ +.|.   ++... |.....+|
T Consensus       356 ~~l~-~~~~---~e~~~~p~l~~V~f  377 (460)
T COG0076         356 EELE-KLGD---FELVNEPELPIVAF  377 (460)
T ss_pred             HHHH-hCCC---cEeecCCccceEEE
Confidence            9998 7763   45544 44443333

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.22  E-value=1.1e-08  Score=100.33  Aligned_cols=323  Identities=15%  Similarity=0.067  Sum_probs=178.9

Q ss_pred             cEEecCcccCCCCCCCCchHHHHHHHHHHHhc-CC-------CCcCCC--CcchHHHHHHHHHHHhCCCCcccccCceee
Q 012238           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-------NKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        85 ~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~~-------~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      .+||+.|-       ..+|+.|++.+++.+.+ ..       .....+  ..-..+.++.+.+++....     ..+|++
T Consensus         5 ~~nF~aGP-------a~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~-----~y~Vlf   72 (364)
T PRK12462          5 QLNFSGGP-------GALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPD-----EYGVVF   72 (364)
T ss_pred             cceecCCC-------cCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCC-----CCeEEE
Confidence            57888662       23466777776654422 10       011111  1113344444555543210     124544


Q ss_pred             eecCCchhHHHHHHHHHHHhCCCCEEE--EcCCCCc-chHHHHhhCCCCeEEeeeecC--CCCCCChhhHHHHHHcCCCC
Q 012238          155 VQGLSGTGSLRLAAALIERYFPGAKVL--ISSPTWG-NHKNIFNDARVPWSEYRYYDP--KTVGLDFEGMIADIKAAPGG  229 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~~gd~Vl--v~~P~y~-~~~~~~~~~G~~~~~v~~~~~--~~~~~d~~~l~~~l~~~~~~  229 (467)
                       ...|||++++.+  .+.++.+||+++  +.+-.|. .+...++.+| ++..+....+  .+..++++.+    +. .+.
T Consensus        73 -l~GggT~~~ea~--~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~----~~-~~d  143 (364)
T PRK12462         73 -LQGGSSLQFSMI--PMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL----DW-DAR  143 (364)
T ss_pred             -EeccHHHHHHHH--HHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh----cc-CCC
Confidence             266799999987  666677999665  4455553 3556677777 5555432111  1234455543    21 134


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC
Q 012238          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (467)
                      ...+.+++-...||+.++        ++.+.++.++|+|.+ +.+.....+.+.           -.++..|.-|++|+|
T Consensus       144 ~~~v~~t~NETstGv~~~--------~~~~~~~~llvvD~s-S~~~s~pid~~~-----------~dvi~agsQKnlgP~  203 (364)
T PRK12462        144 APFRHYVSNETVEGLQFP--------DAAGLPDSPLIADMS-SDFMSRPFDVEA-----------YGMVYAHAQKNLGPA  203 (364)
T ss_pred             CcEEEEccCCCCceEecC--------cccccCCCeEEEEcC-chhhCCCCChHH-----------ccEEEeeccccCCCC
Confidence            556777777778899886        223346899999999 555433222211           146677778999988


Q ss_pred             CCccceEEEecCCHHHHhhhhh--hhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH--HHHHHHHHHH
Q 012238          310 AERIGAMNVVCSSSDLAARCCE--VAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA--EMEMMAGRIK  385 (467)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~--~l~~~~~~~~  385 (467)
                      |+  +.++   -+++.+++...  +.+.++...+++.  .++..||.....++..+|+-     ..++  .++.+.++.+
T Consensus       204 Gl--tvvi---vs~~al~~~~~~~p~~ldy~~~~~~~--s~~nTPpv~~iy~l~~~l~~-----i~~e~GGl~~~~~r~~  271 (364)
T PRK12462        204 GV--TVAI---IRRALLERVPDTLPPMLDFRTHVEHR--SNYNTPPVFAIYVMALVLRW-----IRDEIGGVHAMRDINA  271 (364)
T ss_pred             ce--EEEE---ECHHHHhhccccCCchhhHHHHHhcC--CCCCCchHHHHHHHHHHHHH-----HHHhccCHHHHHHHHH
Confidence            85  4443   45566654111  2344444433322  22334555554554444321     1123  5788999999


Q ss_pred             HHHHHHHHHhhhccC-CCCCccc-cc--CCcceEEecCC-----CHHHHHHHHHcccEEEeCC-----C-eEEecc-CCh
Q 012238          386 NVRQKLFDSLSAKDK-SGKDWSF-IL--RQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD-----G-RISLAG-LSL  449 (467)
Q Consensus       386 ~~r~~l~~~l~~~~g-~~~~~~~-~~--~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g-----g-Ris~~~-~~~  449 (467)
                      ++.+.+++.+. +.. +   +.. ..  ...-+-+.+.+     +.+|++.+ +++|+.-..|     | |+|+.. ++.
T Consensus       272 ~ka~~ly~~id-~~~~~---~~~~~~~~~RS~mnv~f~~~~~~l~~~f~~~a-~~~gl~~lkGhr~vgg~Ras~yna~~~  346 (364)
T PRK12462        272 RKAAMLYATLD-ALNEV---IDCHAHRAARSTMNVAFRFRQPRLDTLFKEQS-TEAGFCGLSGHRSIGGIRASLYNAVSE  346 (364)
T ss_pred             HHHHHHHHHHH-hCCCc---ccCCCChhhcCcceEEEEcCCHHHHHHHHHHH-HHCCCccccCCcccCceEEEcCCCCCH
Confidence            99999999998 654 2   111 11  11222222222     33445444 4569998887     3 999654 577


Q ss_pred             hhHHHHHHHHHHHHHh
Q 012238          450 AKCEYLADAIIDSYHN  465 (467)
Q Consensus       450 ~~i~~~~~~l~~~l~~  465 (467)
                      +.++.+++-+++.-++
T Consensus       347 e~v~~L~~fm~~f~~~  362 (364)
T PRK12462        347 QAVSRLCAFLKDFAIR  362 (364)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8999888888877554

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.20  E-value=4.4e-09  Score=106.30  Aligned_cols=172  Identities=17%  Similarity=0.078  Sum_probs=121.5

Q ss_pred             CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEe
Q 012238          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEY  204 (467)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v  204 (467)
                      ..-+.+..+..|+.+...       ...++  ++|.+.|+..+  +++.+.+||.|+++.+++-+....+-..|+.++++
T Consensus        69 ~G~i~eAqe~aA~~fgAd-------~tyFv--vNGTS~ank~v--i~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl  137 (557)
T COG1982          69 EGPIKEAQELAARVFGAD-------HTYFV--VNGTSTANKAV--INAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYL  137 (557)
T ss_pred             CccHHHHHHHHHHHhCCC-------ceEEE--ECCccHHHHHH--HHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEe
Confidence            333566767677774432       34555  79999999987  77788899999999999988888888999999998


Q ss_pred             eeecCC----CCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC--CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCC
Q 012238          205 RYYDPK----TVGLDFEGMIADIKAAPGGSFILLHGCAHNPT--GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS  278 (467)
Q Consensus       205 ~~~~~~----~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT--G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~  278 (467)
                      ...-..    -++++.+.+.+++.+.+...+++++   .|||  |++++.+   +|++.+.++++++.+|++ .+..++.
T Consensus       138 ~p~~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vi---tnpTYdGv~~n~~---~i~~~~~~~~a~v~~dea-h~~~~~~  210 (557)
T COG1982         138 EPSRNPLYGIIGGIPLETFKEALLAHPDAEKLAVI---TNPTYDGVCYNLR---KIVELLHHYGAWVLYDEA-HPAHFDF  210 (557)
T ss_pred             cCCCCccccccCCCCHHHHHHHHHhChhhheeEEE---ecCccceEeecHH---HHHHHHhhcCceEEhhhc-Ccccccc
Confidence            543222    2478999999999876555245554   4777  8888876   666668899999999999 3443331


Q ss_pred             CCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      .  +..+.  .......+++..|..|.++  ++.-+-.+.+.
T Consensus       211 ~--~~l~~--~~~~~~~~~~tqS~HK~l~--alSQaS~iHv~  246 (557)
T COG1982         211 S--PMLPE--SALNGGADFVTQSTHKLLA--ALSQASMIHVK  246 (557)
T ss_pred             c--ccCcc--hhhhcCceEEEechhhhhh--hhhhhHHHhhC
Confidence            1  11111  1223567899999999974  56666665443

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.20  E-value=3e-08  Score=102.47  Aligned_cols=203  Identities=12%  Similarity=0.021  Sum_probs=126.4

Q ss_pred             HHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCC-cc--------cccC--ceeeeecCCchhHHHHHHHHHHHh--C-
Q 012238          110 ENLMLERGENKEYLPIEGLAAFNKVTAELLFGADN-SV--------LKEQ--RVATVQGLSGTGSLRLAAALIERY--F-  175 (467)
Q Consensus       110 ~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~-~~--------~~~~--~i~~~~t~ggt~al~l~~~~l~~~--~-  175 (467)
                      +...++.+. ..|...+...++.+.+.+|+.+..+ .+        -.++  .-++  |.|||+|...+...-...  . 
T Consensus       110 l~~~lN~n~-~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~--tsGGS~ANl~Al~~AR~~~~~~  186 (522)
T TIGR03799       110 LMVALNQNL-VKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAF--CSGGTVANITALWVARNRLLKA  186 (522)
T ss_pred             HHHHhcCCc-ceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEE--cCchHHHHHHHHHHHHHHhccc
Confidence            333444432 3444455566777777777644321 00        0111  2244  799999988763222111  0 


Q ss_pred             ---------------------CCCEEEEcCCCCcchHHHHhhCCC---CeEEeeeecCCCCCCChhhHHHHHHc---CCC
Q 012238          176 ---------------------PGAKVLISSPTWGNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKA---APG  228 (467)
Q Consensus       176 ---------------------~gd~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~  228 (467)
                                           ++..|++++-.+......++..|.   +++.+|++  +++.+|++.|++.+++   ...
T Consensus       187 ~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d--~~g~~d~~~L~~~i~~~~~~g~  264 (522)
T TIGR03799       187 DGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTD--ANNRIDVDALRDKCAELAEQNI  264 (522)
T ss_pred             cccccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeC--CCCcCCHHHHHHHHHHHHHCCC
Confidence                                 134688888888888888898888   78899984  4678999999999863   223


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcc
Q 012238          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLG  307 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~  307 (467)
                      +..+++.+..++.||.+-+.+   +|+++|+++|+++++|.+|.+...-.   +  ..+..... ..-..+..|..|.+.
T Consensus       265 ~~~~vvataGtt~tGaiDpl~---eIa~i~~~~g~~lHVDaA~gg~~~~~---~--~~r~~l~gle~aDSit~d~HK~l~  336 (522)
T TIGR03799       265 KPLAIVGVAGTTETGNIDPLD---EMADIAQELGCHFHVDAAWGGATLLS---N--TYRHLLKGIERADSVTIDAHKQLY  336 (522)
T ss_pred             CcEEEEEEecCcCCCCcCCHH---HHHHHHHHcCCeEEEEchhhhHHHhC---H--HHHHHhcCchhCCEEEEChhhcCC
Confidence            445555567788999988765   66677999999999999987654210   1  11222222 123566888999543


Q ss_pred             cCCCccceEEEecCCHHHHhh
Q 012238          308 LYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~  328 (467)
                      .| ..+|.++  ..+++..+.
T Consensus       337 ~P-~g~G~ll--vr~~~~~~~  354 (522)
T TIGR03799       337 VP-MGAGMVL--FKDPALMSA  354 (522)
T ss_pred             cC-cccEEEE--EeCHHHHHH
Confidence            23 3367775  355555443

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.18  E-value=2.6e-08  Score=107.54  Aligned_cols=307  Identities=11%  Similarity=0.088  Sum_probs=168.6

Q ss_pred             CcCCCC---cchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh------CCCCEEEEcCCCCcch
Q 012238          120 KEYLPI---EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY------FPGAKVLISSPTWGNH  190 (467)
Q Consensus       120 ~~Y~~~---~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~------~~gd~Vlv~~P~y~~~  190 (467)
                      +-|.|.   +|..++...+.+|+....|.+    + +.++.+||+.+-....+.....      ...++|+++.-.+...
T Consensus       517 hPyqPe~~sqG~lq~i~elq~~l~eltGmd----~-~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtn  591 (939)
T TIGR00461       517 HPFQPSNQVEGYQELIAQLEKWLCSITGFD----A-ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTN  591 (939)
T ss_pred             CCCCchHHhHHHHHHHHHHHHHHHHHHCCC----C-cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcC
Confidence            455554   344444444444443333332    2 2233567776655432222221      1235899999888777


Q ss_pred             HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012238          191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA  270 (467)
Q Consensus       191 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Dea  270 (467)
                      ...++..|++++.++++  .++.+|+++|++.+++...+++++++++|+| +|..-+  .+++|+++|+++|.++++|.+
T Consensus       592 Pasa~~~G~~Vv~V~~d--~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VDgA  666 (939)
T TIGR00461       592 PASAAMAGMQVVPVNCD--QDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLDGA  666 (939)
T ss_pred             HHHHHHCCCEEEEeccC--CCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEEec
Confidence            77788999999999983  4678999999999986445888999999999 788644  267888889999999999999


Q ss_pred             CCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc----CCCccceEEEecCCHHHHhhhhhhh-HHHHHHH--HHh
Q 012238          271 YQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL----YAERIGAMNVVCSSSDLAARCCEVA-VIQVKSQ--LKR  343 (467)
Q Consensus       271 y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~----~G~RiG~~~~v~~~~~~~~~~~~~~-~~~~~~~--l~~  343 (467)
                      +..-... .. .+       ....-.++++|..|.|+.    .|-.+|.+.   ..+++... -+.. .+.-.+.  -..
T Consensus       667 q~~al~~-l~-~P-------g~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~---vr~~L~~~-lPg~~v~~t~d~~greq  733 (939)
T TIGR00461       667 NMNAQVG-LT-SP-------GDLGADVCHLNLHKTFCIPHGGGGPGMGPIG---VKSHLIPF-LPKHDVVSMITGIGGSK  733 (939)
T ss_pred             ChhhCCC-CC-Cc-------cccCCCEEEecCCccCCCCCCCCCCCeEEEE---Ehhhchhh-cCCCcccccccCCCCcc
Confidence            6331111 10 00       112345778889996652    233457774   33333332 0000 0000000  000


Q ss_pred             hccCc---cCCCchH--HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccC-Ccce---
Q 012238          344 LARPM---YSNPPVH--GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-QIGM---  414 (467)
Q Consensus       344 ~~~~~---~~~~~~~--~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~-~~g~---  414 (467)
                      ..+..   ..+....  ...+....|.        .+.+++..+..-.+.+++.+.|. + +.    +...+ ..+.   
T Consensus       734 ~Iga~s~~~~g~a~~~l~a~~yi~~lG--------~~GL~~~a~~ailnAnYl~~rL~-~-~~----~~l~~~~~~~~~h  799 (939)
T TIGR00461       734 SIGSVSAAPYGSASILPISWMYIKMMG--------NEGLPKASVVAILNANYMATRLK-D-HY----PILFVGTLKHVAH  799 (939)
T ss_pred             ccccccccccCcHHHHHHHHHHHHHHC--------HHHHHHHHHHHHHHHHHHHHHhh-c-cC----cccccCCCCceeE
Confidence            00000   1111111  1111112222        23356666666677888888887 5 22    22222 1222   


Q ss_pred             -EEe--c------CCCH-HHHHHHHHcccEEEeC----C-C----eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          415 -FSF--T------GLNK-AQSDNMTNKWHVYMTK----D-G----RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       415 -f~~--~------~l~~-~~~~~ll~~~gI~v~~----g-g----Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                       |++  .      +.+. +..++|++ +|+....    . |    +.+-.. ++++++++++++.++.++
T Consensus       800 Efv~~~~~~~~~~g~~~~dIakrL~d-~G~hapt~~~pv~g~lmiepTE~e-skeelD~f~~al~~I~~e  867 (939)
T TIGR00461       800 ECILDLRPLKAKTGIEAIDVAKRLQD-YGFHAPTLSFPVPGTLMVEPTESE-SLEELDRFCDAMIAIKEE  867 (939)
T ss_pred             EEEEeccchhhhcCCCHHHHHHHHHh-CCeeccccCCccCCeEEEEeeccC-CHHHHHHHHHHHHHHHHH
Confidence             222  1      2333 44566665 5886411    1 3    444444 789999999999777654

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.17  E-value=5.3e-08  Score=99.17  Aligned_cols=336  Identities=10%  Similarity=0.010  Sum_probs=166.2

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHH--HHHHHHHhcCC----CC-cCCCCcchHHHHHHHHHHHhCCCCcccccCceee
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVK--KAENLMLERGE----NK-EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~--~a~~~~~~~~~----~~-~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      +...||+..|.....-|.-  .|.|.  +++.+.+....    .. .+ ...-..++-+.+++... .  .  .-+++.+
T Consensus        37 G~~ylD~~~g~~~~~lGh~--~p~v~~~~ai~~q~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~-~--~--~~~~v~f  108 (431)
T TIGR03251        37 GRRYLDMFSFFASMALGMN--HPALVDDLAFRARLGAAAVNKPSNSDV-YTVAMARFVDTFARVLG-D--P--ALPHLFF  108 (431)
T ss_pred             CCChhhcccChhhcCCCCC--ChhhhHHHHHHHHHHHhhhcccccCCC-CCHHHHHHHHHHHHhcC-C--C--CcCEEEE
Confidence            4578888777542222332  46666  67766654321    00 11 11122233333343320 1  0  1357888


Q ss_pred             eecCCchhHHHHHHHHHHHhC------C------CCEEEEcCCCCcchHHHH-hhCCCC-eE----------E--eeee-
Q 012238          155 VQGLSGTGSLRLAAALIERYF------P------GAKVLISSPTWGNHKNIF-NDARVP-WS----------E--YRYY-  207 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~------~------gd~Vlv~~P~y~~~~~~~-~~~G~~-~~----------~--v~~~-  207 (467)
                        +++|++|.+.+.++...+.      .      +.+|+...-+|.+..... ...|.. ..          .  .|.. 
T Consensus       109 --~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~  186 (431)
T TIGR03251       109 --IEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLT  186 (431)
T ss_pred             --eCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCccc
Confidence              9999999999866554331      1      368999998886554322 222211 00          0  1100 


Q ss_pred             ---cCCCCC-------CChhhHHHHHHcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238          208 ---DPKTVG-------LDFEGMIADIKAAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFAS  276 (467)
Q Consensus       208 ---~~~~~~-------~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~  276 (467)
                         +.....       -+++.+++.+...+.+...+++...+.-.|.. .+.+.+++|.++|++||+++|+||++.++..
T Consensus       187 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~Gr  266 (431)
T TIGR03251       187 FPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGL  266 (431)
T ss_pred             CCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCc
Confidence               000000       12445555665444566677766666666765 5778899999999999999999999887754


Q ss_pred             CCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHH-HHH-hhccCccCCCch
Q 012238          277 GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKS-QLK-RLARPMYSNPPV  354 (467)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~-~l~-~~~~~~~~~~~~  354 (467)
                      .+   ..+... ...-.+++++   ++|.+.  .  .|++   ++.. +.+.         .. .+. ......+.+.+.
T Consensus       267 tG---~~~a~~-~~gv~PDi~~---~gK~~~--~--~g~~---~~~~-i~~~---------~~~~~~~~~~~~~T~~gnp  322 (431)
T TIGR03251       267 TG---TAWAYQ-QLGVQPDIVA---FGKKTQ--V--CGIM---AGRR-VDEV---------ADNVFAVPSRLNSTWGGNL  322 (431)
T ss_pred             cc---hHHHHH-hcCCCCCEEE---ecccCc--c--ceEE---ecch-HHHh---------hhhcccCccccCCCCCCCH
Confidence            31   122221 1122334443   578752  1  2444   2432 2111         00 010 000111223444


Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceEEecCC-C----HHHHHHH
Q 012238          355 HGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL-N----KAQSDNM  428 (467)
Q Consensus       355 ~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~~~~l-~----~~~~~~l  428 (467)
                      ++..++...|+-  +.+  ...++...+.-+..++.|.+..+ +.+ +   .......| .++.+.+ +    ..+.+.+
T Consensus       323 l~~aaa~a~L~~--l~~--~~l~~~~~~~g~~l~~~L~~l~~-~~~~~---i~~vrg~G-~~~~i~~~~~~~~~~~~~~l  393 (431)
T TIGR03251       323 VDMVRATRILEI--IEE--ERLVDNARVQGAHLLARLHELAA-EFPHL---VSNPRGRG-LMCAFDLPSTADRDEVIRQL  393 (431)
T ss_pred             HHHHHHHHHHHH--HHh--cCHHHHHHHHHHHHHHHHHHHHH-hCccc---eecccccc-eeEEEEeCCHHHHHHHHHHH
Confidence            555555544431  100  01112233333333333333222 232 2   11122333 3333322 1    1345555


Q ss_pred             HHcccEEEeCCC----eEEecc-CChhhHHHHHHHHHH
Q 012238          429 TNKWHVYMTKDG----RISLAG-LSLAKCEYLADAIID  461 (467)
Q Consensus       429 l~~~gI~v~~gg----Ris~~~-~~~~~i~~~~~~l~~  461 (467)
                      + ++||++.+.|    ||+... .+++++++++++|.+
T Consensus       394 ~-~~Gvl~~~~g~~~lr~~P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       394 Y-REGVLLLGCGERSIRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             H-hCCeEEecCCCCeEEEECCccCCHHHHHHHHHHHHh
Confidence            5 4699998865    665432 388999999999876

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.16  E-value=6.8e-08  Score=98.39  Aligned_cols=337  Identities=14%  Similarity=0.087  Sum_probs=171.2

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHH-HhcCC--CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLM-LERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~-~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      +...||+..|..-..-|.  -.|.|.+++.+. .....  ...| ......++-+.+++.+......  .-+++++  ++
T Consensus        57 G~~ylD~~sg~~~~~lGh--~~p~i~~Ai~~q~~~~~l~~~~~~-~~~~~~~la~~l~~~l~~~~p~--~~~~v~f--~~  129 (464)
T TIGR00699        57 GNRLLDLYSQISSIPIGY--NNPALLKAAQSPEMATTLINRPAL-GNFPSKDWAKILKEGILKVAPK--GQDQVWT--GM  129 (464)
T ss_pred             CCEEEEccCCHhhhcCCC--CCHHHHHHHHHHHHHHhhcccccC-CcHHHHHHHHHHHHhHHhhCCC--CcCEEEE--eC
Confidence            457899988865222232  367788888763 22211  1122 1112233444443322211110  1257888  99


Q ss_pred             CchhHHHHHHHHHHHhC------------------------CC---CEEEEcCCCCcchHHHHh-hCCCC----------
Q 012238          159 SGTGSLRLAAALIERYF------------------------PG---AKVLISSPTWGNHKNIFN-DARVP----------  200 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~------------------------~g---d~Vlv~~P~y~~~~~~~~-~~G~~----------  200 (467)
                      +|++|.+.+.++.....                        +|   .+|+....+|.+...... ..|..          
T Consensus       130 SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~  209 (464)
T TIGR00699       130 SGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAF  209 (464)
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCC
Confidence            99999999866543321                        11   279999999975533222 22211          


Q ss_pred             -eEEeeeecCC-CC-----------CCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeE
Q 012238          201 -WSEYRYYDPK-TV-----------GLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPF  266 (467)
Q Consensus       201 -~~~v~~~~~~-~~-----------~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li  266 (467)
                       +..+|..... .+           .-+++.+++.+++.......+++-..+.-.|... +.+-+++|.++|++||+++|
T Consensus       210 ~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI  289 (464)
T TIGR00699       210 DWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFI  289 (464)
T ss_pred             CceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence             1112211000 00           0135667777765444566666666666667766 68889999999999999999


Q ss_pred             EeccCCCCCCCCCCCChhHHHHHHhc--CCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh
Q 012238          267 FDVAYQGFASGSLDNDASSVRLFATR--GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL  344 (467)
Q Consensus       267 ~Deay~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~  344 (467)
                      +||+..+|...+   ..+....+ .-  .+++   -.++|.++-.    |+++   ..+ .+..            ....
T Consensus       290 ~DEV~tGfGrtG---~~fa~e~~-gv~~~PDi---~t~gK~lg~g----G~~~---~~~-~~~~------------~~~~  342 (464)
T TIGR00699       290 VDEVQTGVGATG---KFWAHEHW-NLDDPPDM---VTFSKKFQTA----GYFF---HDP-AFRP------------NKPY  342 (464)
T ss_pred             EeeeeeCCCCCc---chhHHHhc-CCCCCCCE---EEehhhhccC----Cccc---cch-hccC------------CCCc
Confidence            999987775421   12222111 11  1343   4468988523    4432   332 1111            1111


Q ss_pred             ccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCCCccccc--CCcceEEecCC
Q 012238          345 ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK--SGKDWSFIL--RQIGMFSFTGL  420 (467)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g--~~~~~~~~~--~~~g~f~~~~l  420 (467)
                      ....+...+.++..++.+.|+.  +.+      +...++.+++-+++.+.|+ ++.  .|..+..+.  .. |+++-+.+
T Consensus       343 ~~~~T~~gnp~~~aaa~a~L~~--l~~------~~l~~~~~~~g~~l~~~L~-~l~~~~~~~i~~vRg~G~-Glm~gie~  412 (464)
T TIGR00699       343 RQFNTWMGDPSRALILREIIQE--IKR------KDLLENVAHVGDYLYTGLE-DLQKKYPEFIQNLRGKGR-GTFIAWDT  412 (464)
T ss_pred             ccccCCCCCHHHHHHHHHHHHH--HHh------cCHHHHHHHHHHHHHHHHH-HHHHhCCCceeeecccCe-EEEEEEec
Confidence            1112334444554555444421  100      1223333333444444444 321  110011122  33 33332233


Q ss_pred             -C----HHHHHHHHHcccEEEeCCC----eEEec-cCChhhHHHHHHHHHHHH
Q 012238          421 -N----KAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       421 -~----~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~~~i~~~~~~l~~~l  463 (467)
                       +    ..+.+.+++ +||++.+.|    ||... .+++++++.++++|.+++
T Consensus       413 ~~~~~~~~i~~~~~~-~Gvl~~~~g~~~ir~~Ppl~it~~eid~~~~~l~~~~  464 (464)
T TIGR00699       413 PDEAKRDKLLKKARN-NGVNIGGCGVKAIRLRPMLVFQKHHADIFLEIISKII  464 (464)
T ss_pred             CCHHHHHHHHHHHHH-CCcEEecCCCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence             2    223455555 599998866    66543 248899999999998864

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=2.2e-09  Score=103.66  Aligned_cols=326  Identities=14%  Similarity=0.080  Sum_probs=191.6

Q ss_pred             CcEEecCcccCCCCCCC-CchHHHHHHHHHHHhc--CCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC-
Q 012238           84 KKLNLGVGAYRTEELQP-YVLDVVKKAENLMLER--GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS-  159 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p-~~~~~v~~a~~~~~~~--~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g-  159 (467)
                      ..+||+.=.|+-..... +-.+.+.+++...--.  .....-+...-..++.+.+|+++..       ++-+++  ..| 
T Consensus       137 ~~lNlgSYNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~-------e~a~vF--~mGf  207 (519)
T KOG1357|consen  137 RCLNLGSYNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGV-------EDAIVF--SMGF  207 (519)
T ss_pred             eeeeecccccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCC-------cceEEE--eccc
Confidence            57888765553211111 1245666666554311  1111122233467888889999654       455655  322 


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC----------CCC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA----------PGG  229 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~----------~~~  229 (467)
                      +|.+...    -..+.||.-|+--+--+.....-++..|+.++.+..       -|.++||+.+++.          +-+
T Consensus       208 ~TNs~~~----p~l~~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkH-------Ndm~~LEr~Lrd~I~~gqP~Thrp~k  276 (519)
T KOG1357|consen  208 ATNSMNI----PSLLGKGSLIISDELNHASLITGARLSGATTRVFRH-------NDMQGLERLLRDAIVYGQPKTHRPWK  276 (519)
T ss_pred             cccccCc----ceeecCCcceeeccccchheeccccccCceEEEEec-------CCHHHHHHHHHHHHhcCCCCcCCcch
Confidence            3333332    234668877776667777777778888998888766       3677787777652          123


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH--HhcCCeEEEEecCccCcc
Q 012238          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF--ATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~S~SK~~~  307 (467)
                      ..+++.-.--.--|.+.   .+.+++.++|+|..+++.||+++.-+.+.   ..-.+..+  .+..+..|..+.|+|.+|
T Consensus       277 ki~iivegiysmEg~iv---~Lp~vvalkkkykayl~lDEAHSiGA~g~---tGrgvce~~g~d~~dvDImMGtftKSfg  350 (519)
T KOG1357|consen  277 KILICVEGIYSMEGTIV---DLPEVVALKKKYKAYLYLDEAHSIGAMGA---TGRGVCEYFGVDPEDVDIMMGTFTKSFG  350 (519)
T ss_pred             heeeeeccceeccCeec---ccHHHHHhhccccEEEEeeccccccccCC---CCcceeeccCCCchhheeecceehhhcc
Confidence            33444332222334433   46678888999999999999976544331   11111122  123456788999999999


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC---ccCCCchHHHHHHHHH--hCChhhHHHHHHHHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP---MYSNPPVHGARIVANV--VGNPALFDEWKAEMEMMAG  382 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~--L~~~~~~~~~~~~l~~~~~  382 (467)
                      ..|   ||+   .+++++++.            ++.....   ..+.+|.+.|+....+  +....-    ....++..+
T Consensus       351 a~G---Gyi---agsk~lid~------------lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dg----t~~g~~k~~  408 (519)
T KOG1357|consen  351 AAG---GYI---AGSKELIDY------------LRTPSPSALYATSLSPPVAQQILTSVKHIMGEDG----TNRGRQKIE  408 (519)
T ss_pred             ccc---cee---cCcHHHHhh------------hccCCCceeecccCChHHHHHHHHHHHhhcCCCc----ccHHHHHHH
Confidence            887   888   489988886            4332221   1234555566554432  111111    233567888


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCcccccCCcc----eEEec-CCCHHHHHHHHHcccEEEeCCC-----------eEEecc
Q 012238          383 RIKNVRQKLFDSLSAKDKSGKDWSFILRQIG----MFSFT-GLNKAQSDNMTNKWHVYMTKDG-----------RISLAG  446 (467)
Q Consensus       383 ~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g----~f~~~-~l~~~~~~~ll~~~gI~v~~gg-----------Ris~~~  446 (467)
                      ++++++.+++..++ ..|+    .+...+..    +.++. .....+.++++++ +|.++-.|           |++.+.
T Consensus       409 ~l~~ns~yfr~~l~-~~gf----ivyG~~dSpVvplll~~~~k~~~f~r~~l~~-nigvVvvgfPatpl~e~r~R~c~Sa  482 (519)
T KOG1357|consen  409 RLAENSRYFRWELQ-KMGF----IVYGNNDSPVVPLLLYGPAKIVAFSREMLER-NIGVVVVGFPATPLLESRARFCLSA  482 (519)
T ss_pred             HHHhhhHHHHHhhh-cCcE----EEecCCCCCcceeeecCcccccHHHHHHHhc-CceEEEEeCCCchHHHhHHHhhhcc
Confidence            89999999999998 7763    44433333    11111 2235666677765 66555443           777654


Q ss_pred             -CChhhHHHHHHHHHHHH
Q 012238          447 -LSLAKCEYLADAIIDSY  463 (467)
Q Consensus       447 -~~~~~i~~~~~~l~~~l  463 (467)
                       .+.|+++++++.+.++=
T Consensus       483 ~ht~e~ld~~l~~i~~~g  500 (519)
T KOG1357|consen  483 SHTKEDLDRALEVIDRVG  500 (519)
T ss_pred             cccHHHHHHHHHHHhhhc
Confidence             36789999998887653

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.14  E-value=5e-08  Score=96.76  Aligned_cols=343  Identities=11%  Similarity=0.036  Sum_probs=179.2

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC---CCcc--hHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL---PIEG--LAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~---~~~G--~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      +.+.||-..|..-..-|.  -.+.+.+|+.+-++.   ..|.   ...+  ..+|-+.+++..-..     +=++|++  
T Consensus        43 G~r~lDg~sg~W~~~~Gh--~~~~i~~Ai~~Q~~~---l~~~~~~~~t~~Pa~~LA~~L~~~aP~~-----~l~~vFf--  110 (449)
T COG0161          43 GRRYLDGMSGLWCVNHGH--GRPEIAEAIKKQLDK---LPHVMFGGFTHEPAIELAEKLAELAPEG-----GLDHVFF--  110 (449)
T ss_pred             CCEEEecccHHHHhhcCc--CCHHHHHHHHHHHHh---CCchhhcccCCchHHHHHHHHHHhCCCC-----CccEEEE--
Confidence            346777777755333333  367788888777654   1121   1122  445555666663211     0358999  


Q ss_pred             cCCchhHHHHHHHHHHHhC-----CCC-EEEEcCCCCcchHH-HHhhCC-------------CCeEEeeeec----C--C
Q 012238          157 GLSGTGSLRLAAALIERYF-----PGA-KVLISSPTWGNHKN-IFNDAR-------------VPWSEYRYYD----P--K  210 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~~-----~gd-~Vlv~~P~y~~~~~-~~~~~G-------------~~~~~v~~~~----~--~  210 (467)
                      +.||++|.+.+.++.....     |.. +++.-..+|.+-.- .+...|             ..+..+|...    .  .
T Consensus       111 ~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~  190 (449)
T COG0161         111 TDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFG  190 (449)
T ss_pred             eCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCC
Confidence            9999999999865543322     322 47777888853211 111111             1122222210    0  0


Q ss_pred             CCC----CChhhHHHHHHcCC-CCcEEEEeCCCCCC-CCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCCh
Q 012238          211 TVG----LDFEGMIADIKAAP-GGSFILLHGCAHNP-TGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (467)
Q Consensus       211 ~~~----~d~~~l~~~l~~~~-~~~~~i~i~~p~NP-TG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~  283 (467)
                      .+.    -..++|++.+.+.. +....++.-.-.-- +|..+ ++.-|+++.++|++||+++|.||+-.+|.-.+   ..
T Consensus       191 ~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG---~~  267 (449)
T COG0161         191 EGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTG---KM  267 (449)
T ss_pred             CChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCc---hh
Confidence            111    23567777777654 44445554443333 66654 55679999999999999999999987876432   11


Q ss_pred             hHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHH-HHhhccCccCCCchHHHHHHHH
Q 012238          284 SSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQ-LKRLARPMYSNPPVHGARIVAN  362 (467)
Q Consensus       284 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~  362 (467)
                      ... ....-.++++.   ++|.+.-.=+.+|.++   ...++.+.        +.+. ........+.+.++++.+++.+
T Consensus       268 FA~-e~~gi~PDi~~---~aKGLT~GY~Pl~a~l---~~~~I~~~--------~~~~~~~~f~HG~TYsghPlacAaAla  332 (449)
T COG0161         268 FAC-EHAGIVPDILC---LAKGLTGGYLPLSAVL---TSDRIYEA--------FSDGDAGAFMHGHTYSGNPLACAAALA  332 (449)
T ss_pred             hhh-hhcCCCCCeee---ecccccccchhhHhHh---hhHHHHHH--------HhcccCCeeccCCccccCHHHHHHHHH
Confidence            111 11112234443   3576542224455553   44555555        3322 1111122223444555455443


Q ss_pred             HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cC-CCCCcccccCCcceEEec----CCC---------HHHHHH
Q 012238          363 VVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DK-SGKDWSFILRQIGMFSFT----GLN---------KAQSDN  427 (467)
Q Consensus       363 ~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~-~g-~~~~~~~~~~~~g~f~~~----~l~---------~~~~~~  427 (467)
                      .|   ++.+     -+...++.++.-.++.+.|+ . +. .|. +--+. .-|+..-+    +..         ...+..
T Consensus       333 ~L---~i~e-----~e~l~~~~~~~~~~l~~~L~-~~l~~~p~-VgdVR-~~Gli~~iElv~d~~t~~~f~~~~~~~~~~  401 (449)
T COG0161         333 NL---DILE-----EEDLLERVAEIGAYLQAGLQ-AALADHPL-VGDVR-GLGLIGAIELVADKATKTPFEARVGARVRA  401 (449)
T ss_pred             HH---HHHH-----hcCHHHHHHHHHHHHHHHHH-HhcccCCc-EEEee-ccceEEEEEEecccccccchhhhHHHHHHH
Confidence            33   2221     12444555556666666666 4 21 111 11111 22333221    111         223444


Q ss_pred             HHHcccEEEeCCC-eEEec---cCChhhHHHHHHHHHHHHHh
Q 012238          428 MTNKWHVYMTKDG-RISLA---GLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       428 ll~~~gI~v~~gg-Ris~~---~~~~~~i~~~~~~l~~~l~~  465 (467)
                      ...++|++++|.| -|-++   .+++++++++++++.+++++
T Consensus       402 ~~~e~Gl~iRp~g~~i~~~PPliit~~eid~l~~~l~~al~~  443 (449)
T COG0161         402 AALERGLLIRPLGDVIYLMPPLIITREEIDELVDALREALDE  443 (449)
T ss_pred             HHHHCCeEEeecCCEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence            4545699999998 44443   24889999999999999875

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.13  E-value=3.8e-08  Score=97.25  Aligned_cols=319  Identities=11%  Similarity=0.058  Sum_probs=183.0

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhC-CCCEEE
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF-PGAKVL  181 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~-~gd~Vl  181 (467)
                      .+...+++..    + +..|.......+|.+.+++++...        .++.  |..|.++-.++  +...+. |||.++
T Consensus        56 S~~m~aAM~~----G-DD~Y~gdpSv~~Lee~vael~G~E--------~alp--thqGRgaE~Il--~~~~~~~~g~e~g  118 (467)
T TIGR02617        56 TQSMQAAMMR----G-DEAYSGSRSYYALAESVKNIFGYQ--------YTIP--THQGRGAEQIY--IPVLIKKREQEKG  118 (467)
T ss_pred             CHHHHHHHHc----C-CcccccCchHHHHHHHHHHHhCCc--------eEEE--CCCCchHHHHH--HHhhccccccccc
Confidence            6777777764    3 356888888899999999996443        4555  88888888886  333455 677776


Q ss_pred             EcCC-------C-CcchHHHHhhCCCCeEEeeee--------cCCCCCCChhhHHHHHHcCC-CCcEEEEeCCCCCC-CC
Q 012238          182 ISSP-------T-WGNHKNIFNDARVPWSEYRYY--------DPKTVGLDFEGMIADIKAAP-GGSFILLHGCAHNP-TG  243 (467)
Q Consensus       182 v~~P-------~-y~~~~~~~~~~G~~~~~v~~~--------~~~~~~~d~~~l~~~l~~~~-~~~~~i~i~~p~NP-TG  243 (467)
                      +..+       . |......+...|+.++.++..        .+..+.+|++.+++.+++.. .+...+...--||- -|
T Consensus       119 ~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GG  198 (467)
T TIGR02617       119 LDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGG  198 (467)
T ss_pred             ccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCC
Confidence            4443       2 222344667889888776432        23356799999999998531 11111111111343 48


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeeEEeccCCCC-CC----CCCCCChhHHHHHHhc--CCeEEEEecCccCcccCCCccceE
Q 012238          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGF-AS----GSLDNDASSVRLFATR--GMELLVAQSYSKNLGLYAERIGAM  316 (467)
Q Consensus       244 ~~~~~~~l~~l~~~~~~~~~~li~Deay~~~-~~----~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~~G~RiG~~  316 (467)
                      ..+|.+.++++.++|++||+.++.|.+-..- ++    .+......+++.++..  ..-..+..|+||.++.|   +|.+
T Consensus       199 qpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgAp---vGg~  275 (467)
T TIGR02617       199 QPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVP---MGGL  275 (467)
T ss_pred             EEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCc---ccce
Confidence            8999999999999999999999999873210 11    0000111233333211  12345678999999866   5665


Q ss_pred             EEecCCHHHHhhhhhhhHHHHHHHHHhhcc-----CccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012238          317 NVVCSSSDLAARCCEVAVIQVKSQLKRLAR-----PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL  391 (467)
Q Consensus       317 ~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l  391 (467)
                      + +..++++.+.         ..+++...-     ..+.+.+.-...+++.-|.+. ..+.   .++...    ..-++|
T Consensus       276 L-ag~d~~~~~l---------~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~-~~~~---yl~~ri----~qv~yl  337 (467)
T TIGR02617       276 L-CFKDDSFFDV---------YTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDG-MNLD---WLAYRI----NQVQYL  337 (467)
T ss_pred             E-EecchhHHHH---------HHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhc-ccHH---HHHHHH----HHHHHH
Confidence            4 1334422221         111332211     123344444444444333322 2111   122222    234677


Q ss_pred             HHHhhhccCCCCCcccccCCcceEEecC-------CC------HHHHHHHHHcccEEEeCC-----------C-------
Q 012238          392 FDSLSAKDKSGKDWSFILRQIGMFSFTG-------LN------KAQSDNMTNKWHVYMTKD-----------G-------  440 (467)
Q Consensus       392 ~~~l~~~~g~~~~~~~~~~~~g~f~~~~-------l~------~~~~~~ll~~~gI~v~~g-----------g-------  440 (467)
                      .+.|. +.|+|    +.. .||--+|++       +.      ..++.+|-.+.||-...-           |       
T Consensus       338 ~~~L~-~~Gvp----i~~-~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~  411 (467)
T TIGR02617       338 VNGLE-EIGVV----CQQ-AGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPA  411 (467)
T ss_pred             HHHHH-hCCCc----EEe-cCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCcc
Confidence            78888 88863    344 555445442       21      234445555667743221           1       


Q ss_pred             ---eEEecc--CChhhHHHHHHHHHHHHHh
Q 012238          441 ---RISLAG--LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       441 ---Ris~~~--~~~~~i~~~~~~l~~~l~~  465 (467)
                         |+++..  .+.+++++++++|..+.++
T Consensus       412 el~RlaipRrvyt~~h~d~v~~~~~~~~~~  441 (467)
T TIGR02617       412 ELLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_pred             ceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence               887753  4778999999999988764

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.11  E-value=3.7e-08  Score=108.07  Aligned_cols=298  Identities=12%  Similarity=0.082  Sum_probs=163.4

Q ss_pred             cchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH--hCCCC----EEEEcCCCCcchHHHHhhCCC
Q 012238          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER--YFPGA----KVLISSPTWGNHKNIFNDARV  199 (467)
Q Consensus       126 ~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~--~~~gd----~Vlv~~P~y~~~~~~~~~~G~  199 (467)
                      +|..++...+.+++....|.    +++.+ +.+||+++..........  ..+|+    +|+++...+......+...|+
T Consensus       538 qG~l~~i~e~q~~l~eltG~----d~~sl-~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~  612 (954)
T PRK05367        538 AGYRELIDQLEAWLAEITGY----DAVSL-QPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGM  612 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHCC----CCEEE-CccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCC
Confidence            34444444444444433332    24444 255666666443222222  23565    699999999877788899999


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++++  .++.+|++.|++.+++...+..++++++|++-.+..   +.+++|+++|+++|+++++|.++..-..+ .
T Consensus       613 ~vv~v~~d--~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e---~~I~eI~~i~h~~G~~v~VDgA~~~al~~-l  686 (954)
T PRK05367        613 KVVVVACD--ENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFE---ETIREICEIVHEHGGQVYLDGANMNAQVG-L  686 (954)
T ss_pred             EEEEECCC--CCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeec---CCHHHHHHHHHHcCCEEEEECcChhhccC-C
Confidence            99999984  356899999999997543466777777766543222   34678888899999999999996422111 1


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccC----CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc-----c---C
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLY----AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA-----R---P  347 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~-----~---~  347 (467)
                        ..+     .+.+ -.++..|..|.|+.|    |-.+|.+.   ..+.+...            +....     .   .
T Consensus       687 --~~p-----g~~G-ADi~~~s~HK~f~~P~G~GGPg~G~l~---vr~~l~p~------------lpg~~v~~~~~~~~~  743 (954)
T PRK05367        687 --ARP-----GDIG-ADVSHLNLHKTFCIPHGGGGPGVGPIG---VKAHLAPF------------LPGHPVQIAGGETGI  743 (954)
T ss_pred             --CCh-----hhcC-CCEEEecCcccCCCCcCCCCCceEEEe---eccccccc------------CCCCccCcCCCCCCc
Confidence              100     0122 346788899987533    22356774   22222222            11100     0   0


Q ss_pred             ccCCCchHHHHHHHH-HhCChhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccC-----CcceEEec--
Q 012238          348 MYSNPPVHGARIVAN-VVGNPALFD-EWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-----QIGMFSFT--  418 (467)
Q Consensus       348 ~~~~~~~~~~~~~~~-~L~~~~~~~-~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~-----~~g~f~~~--  418 (467)
                      .......+++..... +.   .+.. .=.+.+++..++.-.+.+++.+.|++.++    +.+..+     ...+|-+.  
T Consensus       744 g~v~ta~~g~al~~~~a~---~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~----~~~~~~~~~~~~e~i~~~~~~  816 (954)
T PRK05367        744 GAVSAAPFGSASILPISW---MYIRMMGAEGLRQATEVAILNANYIAKRLKDHYP----VLYTGANGRVAHECILDLRPL  816 (954)
T ss_pred             CcchhHHHHHHHHHHHHH---HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcC----ccccCCCCCcccceEEEeecc
Confidence            011112222211110 00   0000 00233556666556778888888872222    122111     12223332  


Q ss_pred             ----CCCHHH-HHHHHHcccEEEeC-----CC--eEEeccC-ChhhHHHHHHHHHHHHHh
Q 012238          419 ----GLNKAQ-SDNMTNKWHVYMTK-----DG--RISLAGL-SLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       419 ----~l~~~~-~~~ll~~~gI~v~~-----gg--Ris~~~~-~~~~i~~~~~~l~~~l~~  465 (467)
                          +.+.+. .++| .++|+....     .|  ||+.+.. +++++++++++++.+..+
T Consensus       817 ~~~~g~~~~di~krL-~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e  875 (954)
T PRK05367        817 KESTGITVDDIAKRL-IDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAE  875 (954)
T ss_pred             cccCCCCHHHHHHHH-HHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHH
Confidence                233344 4455 556886532     23  7766532 779999999999887664

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.10  E-value=5.1e-08  Score=104.78  Aligned_cols=171  Identities=17%  Similarity=0.091  Sum_probs=108.4

Q ss_pred             CcCCC---CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh--CC----CCEEEEcCCCCcch
Q 012238          120 KEYLP---IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--FP----GAKVLISSPTWGNH  190 (467)
Q Consensus       120 ~~Y~~---~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~--~~----gd~Vlv~~P~y~~~  190 (467)
                      +-|.|   .+|.-++...+.+++....|.     ..+.++-++|+.+-..+.+.+...  .+    .++|+++.-.+...
T Consensus       530 hPyqp~e~sQG~lq~i~elq~~l~eLtGm-----d~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtN  604 (954)
T PRK12566        530 HPFAPREQAEGYRAMIDELEAWLCAITGF-----DAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTN  604 (954)
T ss_pred             CCCCchhhhcCHHHHHHHHHHHHHHHHCC-----CeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccC
Confidence            55666   567554444444444333222     222344567776665543333332  12    35788888777555


Q ss_pred             HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012238          191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA  270 (467)
Q Consensus       191 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Dea  270 (467)
                      ...+...|++++.++.+  .++.+|+++|++.+++..+++.++.+.+|++=.  ++ .+.+++|+++++++|.++++|.+
T Consensus       605 pasa~~~GieVv~Vp~D--~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~G--v~-e~~V~eI~~iah~~Galv~vDgA  679 (954)
T PRK12566        605 PASAQMAGMRVVIVECD--PDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHG--VY-EEGIREICEVVHQHGGQVYMDGA  679 (954)
T ss_pred             HHHHHHCCCEEEEeccC--CCCCcCHHHHHHHhhccCCCEEEEEEEecCcCc--ee-cchHHHHHHHHHHcCCEEEEEee
Confidence            55677889999999984  356899999999998555677777777666443  33 45688999999999999999999


Q ss_pred             CCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC
Q 012238          271 YQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (467)
Q Consensus       271 y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (467)
                      .. ......  +.+      ....-.++.++..|+|+.|
T Consensus       680 ~~-~a~~~l--~~P------g~~GADi~~~s~HKtf~~P  709 (954)
T PRK12566        680 NL-NAQVGL--ARP------ADIGADVSHMNLHKTFCIP  709 (954)
T ss_pred             Ch-hhccCC--CCh------hhcCCCEEEecCCcccCcC
Confidence            43 222211  110      1123467889999988633

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.10  E-value=2.3e-07  Score=89.10  Aligned_cols=340  Identities=13%  Similarity=0.064  Sum_probs=193.4

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC-CC-CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-EN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~-~~-~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.||+..|.-...-+.  ..|++.+++.+-.... +. ..|.... .-++.+.+.+.+...     ..++|.+  +++
T Consensus        55 g~EyiD~~ssw~~~~~Gh--anpev~ral~~q~~k~~hs~~~~~t~e-av~l~~~l~~~~~~~-----~~~rvff--~ns  124 (433)
T KOG1401|consen   55 GKEYIDFTSSWAVTILGH--ANPEVARALAEQAKKLGHSSNGYFTLE-AVELEEVLSAVLGKG-----SAERVFF--CNS  124 (433)
T ss_pred             cceeeeeccceeccccCC--CCHHHHHHHHHHHhhheeccCccccHH-HHHHHHHHHhcccCC-----CccEEEE--ecC
Confidence            357899988865332233  3677888877765432 11 2222221 223334444443221     3789999  999


Q ss_pred             chhHHHHHHHHHHHhC----CCC--EEEEcCCCCcchHH-HHhhCCCCeEEeeeec---CC--CCCCChhhHHHHHHcCC
Q 012238          160 GTGSLRLAAALIERYF----PGA--KVLISSPTWGNHKN-IFNDARVPWSEYRYYD---PK--TVGLDFEGMIADIKAAP  227 (467)
Q Consensus       160 gt~al~l~~~~l~~~~----~gd--~Vlv~~P~y~~~~~-~~~~~G~~~~~v~~~~---~~--~~~~d~~~l~~~l~~~~  227 (467)
                      ||+|.+.+..+-....    +-+  +++....+|..... .+...+.....+|.++   +-  ..--|...+++.++.+.
T Consensus       125 GTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~  204 (433)
T KOG1401|consen  125 GTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHK  204 (433)
T ss_pred             CcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCC
Confidence            9999999855543332    112  48888888865433 3333333333332211   00  11247899999998765


Q ss_pred             CCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc
Q 012238          228 GGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (467)
Q Consensus       228 ~~~~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (467)
                      .....+++-.-+--.|..+ +++-+..|.+.|+++|+++|.||+.-+|.--+   ..|....+ .-.+++   ..+.|.+
T Consensus       205 ~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g---~~~a~e~~-~~~PDI---~t~aK~L  277 (433)
T KOG1401|consen  205 GEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLG---YGWAQEYF-GVTPDI---TTVAKPL  277 (433)
T ss_pred             CceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccc---hHHHHHHh-CcCCcc---eeehhhc
Confidence            4456666665555556544 67889999999999999999999987765321   23333222 233343   3567999


Q ss_pred             ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhcc---CccCCCchHHHHHHHHHhC---ChhhHHHHHHHHHHH
Q 012238          307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLAR---PMYSNPPVHGARIVANVVG---NPALFDEWKAEMEMM  380 (467)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~L~---~~~~~~~~~~~l~~~  380 (467)
                      + .|+.+|...   .+.++.+.            +..-..   ..+.+.++++..++...|+   +++    |   +.+.
T Consensus       278 ~-gGlPigA~~---v~~kV~~~------------i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e----~---~k~v  334 (433)
T KOG1401|consen  278 G-GGLPIGATG---VRDKVAEM------------ISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPE----T---LKNV  334 (433)
T ss_pred             c-CCceeEEEe---ehHHHHhh------------cCCCCccccCcccCCChhhhhHHHHHHHHHcCHH----H---HHHH
Confidence            8 899999985   66666665            322111   2233455566666655543   332    2   3445


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEec----CC----C--H---HH----HHHHHHcccEEEeCCCeEE
Q 012238          381 AGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT----GL----N--K---AQ----SDNMTNKWHVYMTKDGRIS  443 (467)
Q Consensus       381 ~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~----~l----~--~---~~----~~~ll~~~gI~v~~ggRis  443 (467)
                      .+.-+..|+.+.+.+. +.+-  ...-. -..++++..    .+    +  .   .+    ...+++ .|+++.|-+-++
T Consensus       335 s~~~k~L~~~l~e~~~-~~~~--~i~g~-~grgl~ig~~~~~p~~~~~d~~~~~~ll~~~~~~~~~~-~gv~i~P~~~l~  409 (433)
T KOG1401|consen  335 SKIGKELRKLLDEYLK-KTPN--SICGG-VGRGLVIGFEFEGPVYKFADAAREQGLLILTLGKGLLE-EGVRIAPIYLLT  409 (433)
T ss_pred             HHHHHHHHHHHHHHhc-cCCC--ceeee-eeeEEEEEEEEeechhhhhhhhhhhhHHHHHHhccccc-ceEEEecccccc
Confidence            5555566777777776 4321  11111 122333221    11    1  1   11    222333 377777743334


Q ss_pred             eccCChhhHHHHHHHHHHHHHhcC
Q 012238          444 LAGLSLAKCEYLADAIIDSYHNVS  467 (467)
Q Consensus       444 ~~~~~~~~i~~~~~~l~~~l~~~~  467 (467)
                      ..+ ++|.++++++++.+.+..++
T Consensus       410 ~~~-~~E~i~~~l~i~~~~l~~~~  432 (433)
T KOG1401|consen  410 VEH-TPEVIQRLLTILEKVLSALN  432 (433)
T ss_pred             ccC-cHHHHHHHHHHHHHHHHHhc
Confidence            444 57899999999999887764

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.07  E-value=2.2e-08  Score=95.12  Aligned_cols=194  Identities=22%  Similarity=0.265  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHH-hc---CCCCcCC-CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCC
Q 012238          104 DVVKKAENLML-ER---GENKEYL-PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA  178 (467)
Q Consensus       104 ~~v~~a~~~~~-~~---~~~~~Y~-~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd  178 (467)
                      ..|++|+++.- ..   ....+|+ ...|-+.+.+..|+.+..       ++-++=.|..+||+|+.++  ++..+.|||
T Consensus        27 ~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vfga-------E~ALVRpq~vSGTHAi~~~--Lfg~LrpGD   97 (403)
T PF06838_consen   27 LKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVFGA-------EDALVRPQFVSGTHAIALA--LFGVLRPGD   97 (403)
T ss_dssp             HHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHCT--------SEEEEETTS-SHHHHHHHH--HHHH--TT-
T ss_pred             HHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHhCc-------hhhhhcccccchHHHHHHH--HHhcCCCCC
Confidence            45666665532 11   1123443 345666677777777543       3344445568999999998  778899999


Q ss_pred             EEEEcC-CCCcchHHH----------HhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCC---
Q 012238          179 KVLISS-PTWGNHKNI----------FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGI---  244 (467)
Q Consensus       179 ~Vlv~~-P~y~~~~~~----------~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~---  244 (467)
                      +.+... .=|......          ++.+|+....+++.  +++.+|++.++++++   ++++++++   +-.+|.   
T Consensus        98 ~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~--~dg~~D~~~i~~~~~---~~tk~v~I---QRSrGYs~R  169 (403)
T PF06838_consen   98 ELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREVPLT--EDGTIDWEAIKKALK---PNTKMVLI---QRSRGYSWR  169 (403)
T ss_dssp             EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE--B---TTSSB-HHHHHHHHH---TTEEEEEE---E-S-TTSSS
T ss_pred             eEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEEeec--CCCCcCHHHHHHhhc---cCceEEEE---ecCCCCCCC
Confidence            988654 334333333          35678889999984  456899999999999   56666665   444454   


Q ss_pred             -CCCHHHHHHHHHHHHhc--CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCc--cceEEEe
Q 012238          245 -DPTPEQWEKIADVIQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER--IGAMNVV  319 (467)
Q Consensus       245 -~~~~~~l~~l~~~~~~~--~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R--iG~~~~v  319 (467)
                       .++.++++++++++|+.  ++++++|.+|.+|+...   .+..+       .-.++.+|+=|+.| .|+-  -||+   
T Consensus       170 ~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~---EP~~v-------GADl~aGSLIKNpG-GgiAptGGYI---  235 (403)
T PF06838_consen  170 PSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQ---EPTEV-------GADLMAGSLIKNPG-GGIAPTGGYI---  235 (403)
T ss_dssp             ----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS----GGGG-------T-SEEEEETTSGGG-TTT-SS-EEE---
T ss_pred             CCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceecccc---Ccccc-------chhheeccceeCCC-CCccCcCCEE---
Confidence             56889999999999874  79999999999998542   22211       23588999999987 4432  2777   


Q ss_pred             cCCHHHHhh
Q 012238          320 CSSSDLAAR  328 (467)
Q Consensus       320 ~~~~~~~~~  328 (467)
                      ++.+++++.
T Consensus       236 aGr~~lVe~  244 (403)
T PF06838_consen  236 AGRKDLVER  244 (403)
T ss_dssp             EESHHHHHH
T ss_pred             echHHHHHH
Confidence            499999997

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=98.98  E-value=4e-08  Score=96.85  Aligned_cols=245  Identities=13%  Similarity=0.013  Sum_probs=134.5

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +...+|+..|.--.  .+-+-.|.+.+++.+.++... ... ......+.+..+++.+....+.  .-+++.+  +++|+
T Consensus        15 G~~~lD~~~~~~~~--~lGh~~p~i~~ai~~~~~~~~-~~~-~~~~~~~~~~~la~~L~~~~p~--~~~~v~f--~~sGs   86 (339)
T PF00202_consen   15 GREYLDFMSGYGSV--NLGHNHPEIAEAIAEQANKLN-YVS-FSGFTHPEAAELAEKLAELFPG--GLDRVFF--ANSGS   86 (339)
T ss_dssp             SEEEEESSHHHHTT--TT-BT-HHHHHHHHHHHHHCS-SCS-TTTSEEHHHHHHHHHHHHHSST--TEEEEEE--ESSHH
T ss_pred             CCEEEECCCCccce--ecCCCccccchhHHHHhhhcc-ccc-ccceeccchhhhhhhhhhcccc--ccceeee--ccCch
Confidence            34789998775411  222336888888888775532 111 1111222333444444332211  1458888  99999


Q ss_pred             hHHHHHHHHHH------HhCCCCEEEEcCCCCcchHH-HHhhCC------------CCeEEeeeecCCCCCCChhh----
Q 012238          162 GSLRLAAALIE------RYFPGAKVLISSPTWGNHKN-IFNDAR------------VPWSEYRYYDPKTVGLDFEG----  218 (467)
Q Consensus       162 ~al~l~~~~l~------~~~~gd~Vlv~~P~y~~~~~-~~~~~G------------~~~~~v~~~~~~~~~~d~~~----  218 (467)
                      +|++.+.++..      ....-.+|+...-+|..... .+...+            -.+..+|.       .++..    
T Consensus        87 eAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~~  159 (339)
T PF00202_consen   87 EAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPF-------PDPAADEEE  159 (339)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEET-------TCHHHHHHH
T ss_pred             HHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccC-------CccchhhhH
Confidence            99999866654      22234699999988875432 111111            12344444       23333    


Q ss_pred             ------HHHHHHc-CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH
Q 012238          219 ------MIADIKA-APGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA  290 (467)
Q Consensus       219 ------l~~~l~~-~~~~~~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~  290 (467)
                            +++.+.+ .++....+++-.-+.-.|... +.+-+++|.++|++||+++|.||+..++.-.+   ..+.. ...
T Consensus       160 ~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG---~~~a~-~~~  235 (339)
T PF00202_consen  160 QACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTG---KFFAS-EHY  235 (339)
T ss_dssp             HHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTS---SSSGH-HHH
T ss_pred             HHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccC---Cccce-ecc
Confidence                  3332221 124445555544444456544 56788999999999999999999998884322   12222 223


Q ss_pred             hcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHh
Q 012238          291 TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVV  364 (467)
Q Consensus       291 ~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L  364 (467)
                      ...++++++   +|.++ .|+.+|.++   ..+++.+.            +.......+.+.+.++..++...|
T Consensus       236 gv~PDiv~~---gK~l~-gG~p~sav~---~~~~i~~~------------~~~~~~~~T~~g~p~~~aaa~~~l  290 (339)
T PF00202_consen  236 GVDPDIVTF---GKGLG-GGLPISAVL---GSEEIMEA------------FQPGSHGSTFGGNPLSCAAALATL  290 (339)
T ss_dssp             TSSSSEEEE---EGGGG-TTSSEEEEE---EEHHHHTT------------SCTTSSTCTTTT-HHHHHHHHHHH
T ss_pred             cccCccccc---ccchh-hhhhccccc---ccchhhcc------------ccccccccccccchHhhhhhhhHH
Confidence            334455443   59998 779999985   66776665            422222223344555656665554

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=98.98  E-value=8.2e-10  Score=94.96  Aligned_cols=66  Identities=18%  Similarity=0.296  Sum_probs=57.7

Q ss_pred             CcCCCCcchHHHHHHHHHHHhCCCC--cccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcc
Q 012238          120 KEYLPIEGLAAFNKVTAELLFGADN--SVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN  189 (467)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~--~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~  189 (467)
                      ..|.+..|.++||+++|+|+.+.+|  ..+++++|++  |.|++++++++  +...+.|||.|+|++|+|+.
T Consensus        86 a~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivv--t~Ga~~al~~l--~~~l~dpGD~VlVp~P~Y~~  153 (153)
T PLN02994         86 ALFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVL--SAGATAANEII--MFCIADPGDAFLVPTPYYAA  153 (153)
T ss_pred             hcCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEE--cCCHHHHHHHH--HHHHcCCCCEEEEeCCCCCC
Confidence            3488889999999999999988777  5678999999  99999999998  45557899999999999963

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=98.97  E-value=1.4e-07  Score=94.03  Aligned_cols=209  Identities=13%  Similarity=0.045  Sum_probs=129.0

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccc-----cCceeeeecCCchhHHHHHHHHHHH-hC-
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK-----EQRVATVQGLSGTGSLRLAAALIER-YF-  175 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~-----~~~i~~~~t~ggt~al~l~~~~l~~-~~-  175 (467)
                      ...+-+.+...++.+. ..|...+...++.+.+.+++....|.+-.     ...=++  |.|||+++..+...... .. 
T Consensus        53 ~~i~~~~l~~~~n~n~-~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~--t~Ggt~anl~al~aAR~~~~~  129 (373)
T PF00282_consen   53 ASILADLLASALNQNG-FTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVF--TSGGTEANLYALLAARERALP  129 (373)
T ss_dssp             HHHHHHHHHHHHT-BT-TSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEE--ESSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcccc-cccccccccccchHHHHHHHHHHhCCcccccccCCCceeE--eccchHHHHHHHHHHHHHHhh
Confidence            4455566666665432 44544556777888888887766565411     122334  79999999876322211 10 


Q ss_pred             ----CC-----C-EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC---CCcEEEEeCCCCCCC
Q 012238          176 ----PG-----A-KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP---GGSFILLHGCAHNPT  242 (467)
Q Consensus       176 ----~g-----d-~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~i~i~~p~NPT  242 (467)
                          .|     . .|++++-++......+..+|..++.||+++  ++.+|++.|++.+++..   ..+.+|+.+.+...|
T Consensus       130 ~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~--~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~  207 (373)
T PF00282_consen  130 RSKAKGVEEIPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDE--DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNT  207 (373)
T ss_dssp             HHHHHTTTHCSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBT--TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTT
T ss_pred             hhhhcccccccccccccccccccHHHHhcceeeeEEEEecCCc--chhhhHHHhhhhhcccccccccceeeeccCCCccc
Confidence                12     2 566777688888999999999999999953  67899999999987531   124466667788888


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcccCCCccceEEEecC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      |.+   +.+++|+++|+++|+|+.+|.+|.+...-.+....     +... ..-.=+.-+++|.++.| ...|++.  +.
T Consensus       208 Ga~---D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~-----~~~gi~~adSit~d~HK~l~~P-~~~~~~l--~r  276 (373)
T PF00282_consen  208 GAI---DPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRH-----LLFGIERADSITIDPHKWLGVP-YGCGVLL--VR  276 (373)
T ss_dssp             SBB----SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGG-----GGTTGGGESEEEEETTTTTS-S-SS-EEEE--ES
T ss_pred             ccc---cCHHHHhhhccccceeeeecccccccccccccccc-----cccccccccccccchhhhhcCC-ccceeEE--ee
Confidence            886   66778888899999999999999984321111111     1111 11123355789999865 6678875  46


Q ss_pred             CHHHHh
Q 012238          322 SSDLAA  327 (467)
Q Consensus       322 ~~~~~~  327 (467)
                      ++....
T Consensus       277 ~~~~l~  282 (373)
T PF00282_consen  277 DKSDLR  282 (373)
T ss_dssp             SGGGHH
T ss_pred             cccchH
Confidence            665443

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PRK05367 glycine dehydrogenase; Provisional

Probab=98.96  E-value=2.9e-07  Score=101.09  Aligned_cols=314  Identities=11%  Similarity=0.089  Sum_probs=176.9

Q ss_pred             EEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCc-----c----hHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           86 LNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE-----G----LAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        86 i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~-----G----~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      .-++.|.|    +. +.|+.+.+.+.+  +.++...|.|.+     |    +-++++.++++.+-.      ..|+.+  
T Consensus        79 ~~ig~G~y----~~-~~P~vi~~~i~~--~~~~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG~~------~anaSl--  143 (954)
T PRK05367         79 SYIGQGYY----GT-HTPPVILRNILE--NPAWYTAYTPYQPEISQGRLEALLNFQTMVADLTGLE------IANASL--  143 (954)
T ss_pred             cccCCCCC----CC-cCcHHHHHHHHh--CcchhhccCCCChHHHHHHHHHHHHHHHHHHHHHCCC------hhhccc--
Confidence            44677777    22 446666554444  234456677743     3    567778888885433      678888  


Q ss_pred             cCCchhHHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHH----hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCc
Q 012238          157 GLSGTGSLRLAAALIERYFP--GAKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS  230 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~~~--gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  230 (467)
                      ..++|.+.+.+++.+ .+.+  +|+|++++-.|+.....+    +..|++++.++..+      |.+      .   ..+
T Consensus       144 ~d~aTAa~ea~~~a~-~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~------d~~------~---~~~  207 (954)
T PRK05367        144 LDEATAAAEAMALAK-RVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK------ALD------H---DDV  207 (954)
T ss_pred             cccHHHHHHHHHHhh-hhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCcc------CCC------c---ccE
Confidence            899999999763332 2445  489999999998876544    56899999998732      111      1   244


Q ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC-----
Q 012238          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-----  305 (467)
Q Consensus       231 ~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-----  305 (467)
                      ..+++.+| |-+|.+.+   +++|+++|+++|.++++|..-..+.-.   .++      -+.+ -.|+++|..|.     
T Consensus       208 ~~vlvq~p-~~~G~i~d---~~~i~~~ah~~Gal~~vda~~~Al~~l---~~p------ge~G-aDi~vgs~qkfg~P~g  273 (954)
T PRK05367        208 FGVLLQYP-GTSGEVRD---YTALIAAAHARGALVAVAADLLALTLL---TPP------GEMG-ADIAVGSAQRFGVPMG  273 (954)
T ss_pred             EEEEEecC-CCCeeecc---HHHHHHHHHHcCCEEEEEehhhhccCC---CCh------hhcC-CCEEEeeCcccCCCCC
Confidence            44555554 78899875   668888899999999998642223221   111      1122 34667777787     


Q ss_pred             cccCCCccceEEEecCCHHHHhhhhhhhHHHH-H-----HHHH--------hhcc-CccCCCchHHHHHHHHHhCChhhH
Q 012238          306 LGLYAERIGAMNVVCSSSDLAARCCEVAVIQV-K-----SQLK--------RLAR-PMYSNPPVHGARIVANVVGNPALF  370 (467)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~-~-----~~l~--------~~~~-~~~~~~~~~~~~~~~~~L~~~~~~  370 (467)
                      ||-||  .|++.   ..+++.+. .++-+... .     ..+.        .+.+ ..++|..+ .|.+. ..+.  .++
T Consensus       274 ~GGP~--aGfla---vr~~~~r~-lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict-~qaL~-a~~a--~~y  343 (954)
T PRK05367        274 FGGPH--AAYFA---VRDAYKRS-MPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICT-AQVLL-AVMA--SMY  343 (954)
T ss_pred             CCCCC--EEEEE---ECHHHHhh-CCCCeeeeecccCCCcccccccccccccccccccccccch-HHHHH-HHHH--HHH
Confidence            55555  68885   33444443 11100000 0     0000        0000 01122211 11111 1110  000


Q ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccC-CcceEEe-cCCCHHH-HHHHHHcccEEEeCC--C--e
Q 012238          371 DEW--KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-QIGMFSF-TGLNKAQ-SDNMTNKWHVYMTKD--G--R  441 (467)
Q Consensus       371 ~~~--~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~-~~g~f~~-~~l~~~~-~~~ll~~~gI~v~~g--g--R  441 (467)
                      -.|  ...++++.++...+..++.+.|+ ..|+    +...+ ..+.+.+ .+.+.+. .++++ ++||.+..-  +  |
T Consensus       344 ~~~~g~~Gl~~Ia~~~~~la~~l~~~L~-~~G~----~~~~~~~f~~~~~~~~~~~~~i~~~l~-~~gi~~~~~~~~~l~  417 (954)
T PRK05367        344 AVYHGPEGLKAIARRVHRLAAILAAGLR-ALGL----EVVHDSFFDTLTVEVGGDAAAVLARAL-AAGINLRRVDDDHVG  417 (954)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHH-hcCc----ccCCCCCCCeEEEeCCCCHHHHHHHHH-HCCceeccccCCEEE
Confidence            011  24477888888889999999998 7663    33222 1122221 1224444 44554 569988543  2  8


Q ss_pred             EEeccC-ChhhHHHHHHHHH
Q 012238          442 ISLAGL-SLAKCEYLADAII  460 (467)
Q Consensus       442 is~~~~-~~~~i~~~~~~l~  460 (467)
                      ||+... ++++|+.++++|.
T Consensus       418 is~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        418 ISLDETTTREDLAALLAVFG  437 (954)
T ss_pred             EEecccCCHHHHHHHHHHHc
Confidence            887654 6689999999986

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=98.92  E-value=8.1e-07  Score=84.88  Aligned_cols=333  Identities=14%  Similarity=0.106  Sum_probs=176.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc--CCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER--GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~--~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.+|+..|..--.-+.-  .|.|.+++.+-+..  .....|.. .-..+|-+++++.+-+.      -+.+++  +++
T Consensus        49 G~ryLD~f~Gi~tvslGHc--hP~v~~a~~kQl~~l~H~t~~~~~-~pi~~~Ae~L~s~~P~~------l~~vfF--~ns  117 (442)
T KOG1404|consen   49 GRRYLDAFGGIVTVSLGHC--HPDVVAAAVKQLKKLYHTTSGYLN-PPIHDLAEALVSKLPGD------LKVVFF--VNS  117 (442)
T ss_pred             CceeehhhCCeEEEEcCCC--ChHHHHHHHHhhhhhEEeeccccC-CcHHHHHHHHHHhCCCC------ceEEEE--ecC
Confidence            3466776666542222222  46677776665532  12245543 23556777777775433      235777  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchH-HHHhhCCCCeEEeeee----------cCC----CCCCC-----h---
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHK-NIFNDARVPWSEYRYY----------DPK----TVGLD-----F---  216 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~-~~~~~~G~~~~~v~~~----------~~~----~~~~d-----~---  216 (467)
                      |++|.+++.++.......-.++....+|.... ..+...|......++.          +++    -++-+     -   
T Consensus       118 GsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~  197 (442)
T KOG1404|consen  118 GSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRY  197 (442)
T ss_pred             CchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHH
Confidence            99999998555444443346777777775433 2333333322222110          000    01111     1   


Q ss_pred             -hhHHHHHHcC-CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012238          217 -EGMIADIKAA-PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (467)
Q Consensus       217 -~~l~~~l~~~-~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (467)
                       +++++.+... +.....++.-+-+---|++ +++--+++..++|+++|.++|.||+-.+|.-.+   ..|..    +..
T Consensus       198 a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG---~~wgf----e~h  270 (442)
T KOG1404|consen  198 AKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTG---HMWGF----ESH  270 (442)
T ss_pred             HHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccc---ccccc----ccc
Confidence             3444444433 3333344434434333544 456779999999999999999999977776432   22222    222


Q ss_pred             CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc-cCccCCCchHHHHHHHHHhCChhhHHH
Q 012238          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA-RPMYSNPPVHGARIVANVVGNPALFDE  372 (467)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~L~~~~~~~~  372 (467)
                      +-+==+-+++|.+| .|..+|.++   -.+++.+-            +.+.. -..+.+.++++..+..++|+=  ++  
T Consensus       271 ~v~PDIvTmAKgiG-nG~Pl~AVv---tt~EIa~v------------~~~~~~~fnTyggnP~a~avg~aVL~V--ik--  330 (442)
T KOG1404|consen  271 GVVPDIVTMAKGIG-NGFPLGAVV---TTPEIADV------------LNQKSSHFNTYGGNPVACAVGLAVLKV--IK--  330 (442)
T ss_pred             CCCccHHHHHhhcc-CCCcceeee---cCHHHHHH------------HHhccccccccCCCchhHHHHHHHHHH--HH--
Confidence            22222457899999 889999996   55666665            33322 222334444555555555431  11  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccC--CcceEEecCC----------C---HHHHHHHHHcccEEEe
Q 012238          373 WKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR--QIGMFSFTGL----------N---KAQSDNMTNKWHVYMT  437 (467)
Q Consensus       373 ~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~--~~g~f~~~~l----------~---~~~~~~ll~~~gI~v~  437 (467)
                          -++..++.++.-.+|.+.|. ++...  ...+..  .-|.++=+.+          .   ..++.+-++++|+++.
T Consensus       331 ----ee~LqE~aa~vG~yl~~~l~-~l~d~--h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg  403 (442)
T KOG1404|consen  331 ----EENLQENAAEVGSYLLEKLA-ALKDK--HPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVG  403 (442)
T ss_pred             ----HHhHHHHHHHHHHHHHHHHH-HHhhc--CCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeee
Confidence                12444555555666666665 43210  111111  1233321111          1   1234444556799997


Q ss_pred             CCC------eEEec-cCChhhHHHHHHHH
Q 012238          438 KDG------RISLA-GLSLAKCEYLADAI  459 (467)
Q Consensus       438 ~gg------Ris~~-~~~~~~i~~~~~~l  459 (467)
                      .||      ||+-. +++++|++.+++..
T Consensus       404 ~g~i~G~vfriaPPlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  404 KGGIHGNVFRIAPPLCITKEDIDFAVEYF  432 (442)
T ss_pred             cccccceEEEecCCeeccHHHHHHHHHHH
Confidence            775      88743 34889997666633

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.90  E-value=3.3e-06  Score=91.40  Aligned_cols=344  Identities=13%  Similarity=0.109  Sum_probs=174.3

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (467)
                      ..+|+..|..-..-+. ...|.+.+++.+.+..-. +-..+.. ..+-...+|+.|....+.. .-+++++  +.+|++|
T Consensus       366 ~ylD~~sg~w~~~lG~-h~~p~I~~Ai~~Qa~rl~-hv~~~~~-~hepa~~LAe~L~~~~~~~-~l~rVff--s~sGSeA  439 (817)
T PLN02974        366 QQFDACASWWTQGPDP-TLQPELARAVAYAAGRYG-HVMFPEN-VHEPALRAAELLLGGPGKG-WASRVFF--SDNGSTA  439 (817)
T ss_pred             eEEEcchhHHHhCCCc-CCCHHHHHHHHHHHhhCC-ccccCcc-CCHHHHHHHHHHHhccCCC-CCCEEEE--CCchHHH
Confidence            5777777643222221 125778888888775421 1111111 1233344566554421100 0248999  9999999


Q ss_pred             HHHHHHHHHH-hC--C----------------CCEEEEcCCCCcchHH-HHhhCCC---------C-----eEEe--eee
Q 012238          164 LRLAAALIER-YF--P----------------GAKVLISSPTWGNHKN-IFNDARV---------P-----WSEY--RYY  207 (467)
Q Consensus       164 l~l~~~~l~~-~~--~----------------gd~Vlv~~P~y~~~~~-~~~~~G~---------~-----~~~v--~~~  207 (467)
                      ++.+.++... ..  .                ..+|+....+|.+... .+...|-         .     ...+  |..
T Consensus       440 vE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~  519 (817)
T PLN02974        440 IEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTV  519 (817)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCcc
Confidence            9998665422 21  1                2368888888864322 2221110         0     0001  100


Q ss_pred             ---c-------CCC-----------CC-----CC------------hhhHHHHHHc-----CCCCcEEEEeCC-CCCCCC
Q 012238          208 ---D-------PKT-----------VG-----LD------------FEGMIADIKA-----APGGSFILLHGC-AHNPTG  243 (467)
Q Consensus       208 ---~-------~~~-----------~~-----~d------------~~~l~~~l~~-----~~~~~~~i~i~~-p~NPTG  243 (467)
                         .       +..           +.     +|            .+.+++.+++     .+.+...+++-. .+.-.|
T Consensus       520 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGG  599 (817)
T PLN02974        520 GMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGG  599 (817)
T ss_pred             ccccccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCC
Confidence               0       000           00     01            1456666652     123444555443 256667


Q ss_pred             CCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCC-CccceEEEecC
Q 012238          244 IDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCS  321 (467)
Q Consensus       244 ~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~  321 (467)
                      .++ +++-+++|.++|++||+++|.||+..+|.-.+   ..+.. ....-.++++   .++|.++ .| +.+|.++   .
T Consensus       600 mi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG---~~fa~-e~~gv~PDIi---~~gKgLt-gG~~Plaa~l---~  668 (817)
T PLN02974        600 MLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLG---VESAW-ELLGCKPDIA---CYAKLLT-GGLVPLAATL---A  668 (817)
T ss_pred             cccCCHHHHHHHHHHHHHhCCEEEEeecccCCCccc---chhhH-HhcCCCCCEE---eeccccc-CCCCccEEEE---E
Confidence            765 67889999999999999999999999884321   12222 1222233444   3579988 78 5888885   6


Q ss_pred             CHHHHhhhhhhhHHHHHHHHH--hhccCccCCCchHHHHHHHHHhC---ChhhHHHHHHHHHHHHHHHHHHHHHHH----
Q 012238          322 SSDLAARCCEVAVIQVKSQLK--RLARPMYSNPPVHGARIVANVVG---NPALFDEWKAEMEMMAGRIKNVRQKLF----  392 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~L~---~~~~~~~~~~~l~~~~~~~~~~r~~l~----  392 (467)
                      ++++.+.        +...-+  ......+.+.++++..++.+.|+   ++++.+.       ..++-++..+.+.    
T Consensus       669 ~~~I~~~--------f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~-------l~~~~~~l~~~l~~~l~  733 (817)
T PLN02974        669 TEEVFEA--------FRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPN-------LIPPGSRLRELWDEELV  733 (817)
T ss_pred             cHHHHHh--------hccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHH-------HHHHHHHHHHHHHHHHH
Confidence            7777776        321000  01112233455555555554443   3222222       2222222223333    


Q ss_pred             HHhhhccCCCCCcccccCCcceEEe--cC------CC----HHHHHHHHHcccEEEeCCC---eEEe-ccCChhhHHHHH
Q 012238          393 DSLSAKDKSGKDWSFILRQIGMFSF--TG------LN----KAQSDNMTNKWHVYMTKDG---RISL-AGLSLAKCEYLA  456 (467)
Q Consensus       393 ~~l~~~~g~~~~~~~~~~~~g~f~~--~~------l~----~~~~~~ll~~~gI~v~~gg---Ris~-~~~~~~~i~~~~  456 (467)
                      +.++ +++.   +.-+...|.++.+  ..      .+    ..+.+.++.++||++++.|   ||.- ...+++++++++
T Consensus       734 ~~l~-~~p~---V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~Gnvi~l~pP~~i~~e~l~~~~  809 (817)
T PLN02974        734 RAIS-SLPN---VERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLGNVVYLMCGPTTSPETCTRLL  809 (817)
T ss_pred             HHHh-hCCC---eeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEecCCEEEEeCCCCCCHHHHHHHH
Confidence            3333 3321   1122233322211  11      01    1234455525799999976   4432 233789999999


Q ss_pred             HHHHHHH
Q 012238          457 DAIIDSY  463 (467)
Q Consensus       457 ~~l~~~l  463 (467)
                      ++|.+.+
T Consensus       810 ~~l~~~~  816 (817)
T PLN02974        810 RKVYRRL  816 (817)
T ss_pred             HHHHHHh
Confidence            9998875

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=98.78  E-value=2.9e-06  Score=93.07  Aligned_cols=317  Identities=14%  Similarity=0.051  Sum_probs=171.6

Q ss_pred             EecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCC-----cc----hHHHHHHHHHHHhCCCCcccccCceeeeec
Q 012238           87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI-----EG----LAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (467)
Q Consensus        87 ~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~-----~G----~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (467)
                      .++.|.|    .. .+|+.+.+++.+...  +...|.|.     +|    +.++++.++++.+-.      ++|+.+  +
T Consensus       107 fiG~G~y----~~-~~P~~v~~~i~~~~~--~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~------~anaSL--~  171 (993)
T PLN02414        107 YIGMGYY----NT-HVPPVILRNILENPG--WYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLP------MSNASL--L  171 (993)
T ss_pred             ccCCCCC----Cc-cCCHHHHHHHHhChH--HHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCC------hhhEee--c
Confidence            3455655    22 246777677665432  22445543     34    678888899996443      789988  9


Q ss_pred             CCchhHHHHHHHHHHHhCCC--CEEEEcCCCCcchHHHH----hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcE
Q 012238          158 LSGTGSLRLAAALIERYFPG--AKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (467)
Q Consensus       158 ~ggt~al~l~~~~l~~~~~g--d~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (467)
                      .++|.+.+.+.+.. .+.+|  |+|++++-.|+.+...+    +..|++++.++..+     .+      ...   ....
T Consensus       172 d~aTAaaea~~~a~-~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~-----~~------~~~---~~v~  236 (993)
T PLN02414        172 DEGTAAAEAMAMCN-NILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKD-----FD------YSS---GDVC  236 (993)
T ss_pred             CChHHHHHHHHHHH-hcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchh-----hc------ccc---CceE
Confidence            99999999873322 24444  78999999998876655    45688888887631     11      001   1222


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc---
Q 012238          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL---  308 (467)
Q Consensus       232 ~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~---  308 (467)
                      .+++.+ -|-+|.+.+   +++|+++|+++|+++++ .+ +.+...... +   +   .+. .-.|++++-.|..+.   
T Consensus       237 ~vlvq~-P~~~G~v~d---v~~I~~~ah~~GaL~iV-aa-d~lal~~l~-~---p---ge~-GADi~vgsgqKwg~P~G~  302 (993)
T PLN02414        237 GVLVQY-PATDGEVLD---YAEFVKNAHANGVKVVM-AT-DLLALTMLK-P---P---GEW-GADIVVGSAQRFGVPMGY  302 (993)
T ss_pred             EEEEec-CCCCeEEcC---HHHHHHHHHHcCCEEEE-EE-CHHHhcCCC-C---H---hhc-cCcEEEECCCccccCCCC
Confidence            333222 234899866   55788889999999999 33 222222111 1   1   112 235668888887622   


Q ss_pred             CCCccceEEEecCCHHHHhhhhhhh-HHH----------------HHHHHHhhccCccCCCchHHHHHHHHHhCChhhHH
Q 012238          309 YAERIGAMNVVCSSSDLAARCCEVA-VIQ----------------VKSQLKRLARPMYSNPPVHGARIVANVVGNPALFD  371 (467)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~-~~~----------------~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~  371 (467)
                      .|-+.|++.   ..+++.+.  -++ +..                .+.+-.+.. ..+++..  +..++...+..-....
T Consensus       303 GGP~aGfla---vr~~~~r~--~PgriVG~s~d~~g~~~~~l~LqtReqhiRrE-kaTsNic--t~qaL~A~la~~y~~~  374 (993)
T PLN02414        303 GGPHAAFLA---TSQEYKRL--MPGRIIGVSVDSSGKPALRMAMQTREQHIRRD-KATSNIC--TAQALLANMAAMYAVY  374 (993)
T ss_pred             CCCCeeEEE---ECHHHHhh--CCCcccCcccCCCCCcccccccccccchhhhc-ccccchh--HHHHHHHHHHHHHHHH
Confidence            234478886   33444332  010 000                000000000 0112221  1111111111000000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccC-CcceEEe-cCCCHHHHHHHHHcccEEEeCC--C--eEEec
Q 012238          372 EWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-QIGMFSF-TGLNKAQSDNMTNKWHVYMTKD--G--RISLA  445 (467)
Q Consensus       372 ~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~-~~g~f~~-~~l~~~~~~~ll~~~gI~v~~g--g--Ris~~  445 (467)
                      +-...++++.++..++..++.+.|. ..|+    +...+ ..+.|.+ ++-+.+..++|. ++||.+...  +  |+|+.
T Consensus       375 ~g~~Gl~~Ia~ri~~la~~l~~~L~-~~G~----~~~~~~~f~~vt~~~~~~~~v~~~L~-~~gI~l~~~~~~~lrvs~~  448 (993)
T PLN02414        375 HGPEGLKTIAQRVHGLAGVFAAGLK-KLGF----QVQSLPFFDTVKVKCSDADAIADAAA-KVGINLRVVDANTVTVSFD  448 (993)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHh-hcCC----ccCCCCCcCeEEEecCCHHHHHHHHH-HCCCeeEEecCCeEEEEee
Confidence            0013366778888888999999998 7763    43322 2222322 232333444554 569877643  2  88876


Q ss_pred             cC-ChhhHHHHHHHHHH
Q 012238          446 GL-SLAKCEYLADAIID  461 (467)
Q Consensus       446 ~~-~~~~i~~~~~~l~~  461 (467)
                      .. ++++|+.++++|..
T Consensus       449 e~~T~edId~L~~~l~~  465 (993)
T PLN02414        449 ETTTLEDVDKLFKVFAG  465 (993)
T ss_pred             ccCCHHHHHHHHHHHcc
Confidence            54 66899999999863

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=98.69  E-value=1.2e-05  Score=76.08  Aligned_cols=310  Identities=13%  Similarity=0.104  Sum_probs=182.0

Q ss_pred             CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh---CCCCEEEEcCCCCcc-hHHHHh
Q 012238          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY---FPGAKVLISSPTWGN-HKNIFN  195 (467)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~---~~gd~Vlv~~P~y~~-~~~~~~  195 (467)
                      ..|....+.-.|.+++.+.+.-        +.++.  |.-|-+|-++...++...   .||.+..+++.+|.. ...-.+
T Consensus        73 EAYagsrs~~~L~~avkdifGf--------q~~iP--thQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~  142 (471)
T COG3033          73 EAYAGSRSYYALADAVKDIFGF--------QYTIP--THQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQ  142 (471)
T ss_pred             hhhcccccHHHHHHHHHHhcCc--------eeeee--ccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHH
Confidence            6798888999999999998632        34544  777777766642222111   266666677766654 344556


Q ss_pred             hCCCCeEEeeeecCC--------CCCCChhhHHHHHHcCCC--CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012238          196 DARVPWSEYRYYDPK--------TVGLDFEGMIADIKAAPG--GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP  265 (467)
Q Consensus       196 ~~G~~~~~v~~~~~~--------~~~~d~~~l~~~l~~~~~--~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~l  265 (467)
                      ..|+.++.++.++..        .+.+|++.|++.+++...  -+.+++..+.|.-.|.-.+.+.+++..++|++|++.+
T Consensus       143 ~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipv  222 (471)
T COG3033         143 INGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPV  222 (471)
T ss_pred             hcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcE
Confidence            788888887764322        245899999999987532  3344444445667799999999999999999999999


Q ss_pred             EEeccC-CCCCC----CCCCCChhHHHHHHhc--CCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHH
Q 012238          266 FFDVAY-QGFAS----GSLDNDASSVRLFATR--GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVK  338 (467)
Q Consensus       266 i~Deay-~~~~~----~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~  338 (467)
                      +.|.+- .+-.+    .+.....|++...+..  ..-.-+..|..|.-- ..  +|.++. ..++...+         +.
T Consensus       223 v~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~l-vn--mGGfl~-~~D~~~fD---------vy  289 (471)
T COG3033         223 VMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGL-VN--MGGFLC-FKDDSFFD---------VY  289 (471)
T ss_pred             EeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccce-ec--cccEEE-ecCccHHH---------HH
Confidence            999872 11111    1222345566555431  112234567777543 22  344431 23442211         22


Q ss_pred             HHHHhhcc-----CccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcc
Q 012238          339 SQLKRLAR-----PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIG  413 (467)
Q Consensus       339 ~~l~~~~~-----~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g  413 (467)
                      .+++...-     +.+.+...-...+.+.-|.+ .....|   +.   .|+ ...++|.+.|. +.|.    .+..|.||
T Consensus       290 ~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e-~~~~~y---l~---~Rv-~Qv~YL~~~l~-~~GV----pi~~paGG  356 (471)
T COG3033         290 EECRTLVVVQEGFPTYGGLAGRDMEALAVGLRE-GVNFDY---LA---HRV-AQVQYLADGLE-EAGV----PIVQPAGG  356 (471)
T ss_pred             HHHHhheEeeccccccCcccchhHHHHHHHHHH-hcCcHH---HH---HHH-HHHHHHHHHHH-hcCC----eeEecCCC
Confidence            22333221     12223332223333322322 122222   22   223 23567888998 8884    56777777


Q ss_pred             eEEecCC-------C------HHHHHHHHHcccEEEeCCC---------------------eEEec--cCChhhHHHHHH
Q 012238          414 MFSFTGL-------N------KAQSDNMTNKWHVYMTKDG---------------------RISLA--GLSLAKCEYLAD  457 (467)
Q Consensus       414 ~f~~~~l-------~------~~~~~~ll~~~gI~v~~gg---------------------Ris~~--~~~~~~i~~~~~  457 (467)
                      --+|++.       .      ..+..++-++.||-...-|                     |+.+.  ..+.+.++.+++
T Consensus       357 Havfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~  436 (471)
T COG3033         357 HAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIE  436 (471)
T ss_pred             ceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHH
Confidence            5566532       1      2345566677888765532                     77764  346688999999


Q ss_pred             HHHHHHHh
Q 012238          458 AIIDSYHN  465 (467)
Q Consensus       458 ~l~~~l~~  465 (467)
                      +++.+.++
T Consensus       437 a~~~l~e~  444 (471)
T COG3033         437 AFKALKEN  444 (471)
T ss_pred             HHHHHHhc
Confidence            99888653

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.68  E-value=4.9e-06  Score=80.97  Aligned_cols=215  Identities=17%  Similarity=0.084  Sum_probs=135.4

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHH-HHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNK-VTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~-aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      ++||++--.-.+.-+-....+.+.+++...+.......|.-..|.-.-|- .+++.+.+-.+    .+.+++  +++.+.
T Consensus        21 ~viN~~G~v~~t~lG~s~~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~~----aea~~i--vnnn~a   94 (395)
T COG1921          21 RVINAIGTVLMTNLGRSLYSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLTG----AEAAAI--VNNNAA   94 (395)
T ss_pred             hhhhhhhhheeccCCCccCCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhcccc----hhheee--ECCcHH
Confidence            56666643333333444458888899988886544455544444322222 34444333321    356666  788888


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcC-----CCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q 012238          163 SLRLAAALIERYFPGAKVLISS-----PTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~-----P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~  237 (467)
                      |+.++   +..+.++.+|+++.     ++.++...+++..|++++++...    ..-...+++.++.+   ++.+++-..
T Consensus        95 AVll~---~~al~~~~EvVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~t----n~t~~~d~~~AIne---~ta~llkV~  164 (395)
T COG1921          95 AVLLT---LNALAEGKEVVVSRGELVEGGAFRVPDIIRLAGAKLVEVGTT----NRTHLKDYELAINE---NTALLLKVH  164 (395)
T ss_pred             HHHHH---HhhhccCCeEEEEccccccCCCCChhHHHHHcCCEEEEeccc----CcCCHHHHHHHhcc---CCeeEEEEe
Confidence            88886   44444455555543     47788999999999999998663    23677889899984   444444333


Q ss_pred             CCC-CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceE
Q 012238          238 AHN-PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (467)
Q Consensus       238 p~N-PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~  316 (467)
                      -+| +--..++   .++++++|+++|+++++|.+-.....     ..+.++.+...+. .++++|--|.++  |-+-|.+
T Consensus       165 s~~~~f~~~l~---~~~l~~ia~~~~lpvivD~aSg~~v~-----~e~~l~~~la~Ga-DLV~~SgdKllg--GPqaGii  233 (395)
T COG1921         165 SSNYGFTGMLS---EEELVEIAHEKGLPVIVDLASGALVD-----KEPDLREALALGA-DLVSFSGDKLLG--GPQAGII  233 (395)
T ss_pred             ecccccccccc---HHHHHHHHHHcCCCEEEecCCccccc-----cccchhHHHhcCC-CEEEEecchhcC--CCccceE
Confidence            333 2222334   44677779999999999999444332     1223445555544 466888899986  6677888


Q ss_pred             EEecCCHHHHhh
Q 012238          317 NVVCSSSDLAAR  328 (467)
Q Consensus       317 ~~v~~~~~~~~~  328 (467)
                      +   +.++++++
T Consensus       234 ~---GkKelI~~  242 (395)
T COG1921         234 V---GKKELIEK  242 (395)
T ss_pred             e---chHHHHHH
Confidence            4   99999988

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.65  E-value=1e-05  Score=76.70  Aligned_cols=342  Identities=13%  Similarity=0.125  Sum_probs=189.1

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC--CcchHHHHHHH---H-HHHhCCCCcccccC-ceeeee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVT---A-ELLFGADNSVLKEQ-RVATVQ  156 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~ai---a-~~l~~~~~~~~~~~-~i~~~~  156 (467)
                      +-|.|=..++       +....|.+|+...+.+.++.+|+.  ..|-.++...+   + +.-...++  ++|+ .=+-||
T Consensus        41 ~gieLIaSEN-------Fts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~--ldp~kWGVNVQ  111 (477)
T KOG2467|consen   41 RGIELIASEN-------FTSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFG--LDPEKWGVNVQ  111 (477)
T ss_pred             cceeEeeccc-------chHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhC--CCHHHCceeec
Confidence            4577765544       237889999999987766666643  12222232221   1 11111122  2243 334467


Q ss_pred             cCCchhHHHHHHHHHHHhCCCCEEEEcC-C--CCc--chHHHHhhCCCC-----eEEeeeecCCCCCCChhhHHHHHHcC
Q 012238          157 GLSGTGSLRLAAALIERYFPGAKVLISS-P--TWG--NHKNIFNDARVP-----WSEYRYYDPKTVGLDFEGMIADIKAA  226 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~-P--~y~--~~~~~~~~~G~~-----~~~v~~~~~~~~~~d~~~l~~~l~~~  226 (467)
                      ..+|+.|.+.+  ..+.+.|+|+++-.+ |  ++-  +|..--+...+.     --+|.+ ++.++-+|.|.|++.... 
T Consensus       112 p~SGSPANfav--Ytall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv-~~~TG~IDYD~Le~~A~~-  187 (477)
T KOG2467|consen  112 PYSGSPANFAV--YTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKV-DPSTGYIDYDKLEKTATL-  187 (477)
T ss_pred             cCCCCchhhHH--HhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceee-CCCCCceehHHHHHHHHh-
Confidence            78899988887  566688999998766 3  221  111111111111     122333 356788999999998776 


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCccC
Q 012238          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (467)
Q Consensus       227 ~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (467)
                       -++++++-.....|  ..++-+   ++-++|.+.|.+++.|.++. ++.....  -+.++      ..-.||..+-.|.
T Consensus       188 -frPk~iiaG~SaY~--R~~DYa---R~R~Iad~~gA~Lm~DMAHISgLVAA~v--ipsPF------ey~DiVTTTTHKs  253 (477)
T KOG2467|consen  188 -FRPKLIIAGTSAYS--RLIDYA---RFRKIADKVGAYLMADMAHISGLVAAGV--IPSPF------EYCDIVTTTTHKS  253 (477)
T ss_pred             -cCCcEEEeccccch--hhccHH---HHHHHHHhcCceeehhhhhHHHHHhccc--CCCcc------cccceeecccccc
Confidence             35567764433333  233444   45555888899999999963 3332211  01111      1245778888898


Q ss_pred             cccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCcc-CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012238          306 LGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMY-SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  384 (467)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~  384 (467)
                      +  .|-|-|.|.+.-+.+..-...-....-++.+.+....-+.. .+|-.+...+++.+|....     ..+..+..++.
T Consensus       254 L--RGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~-----tpefk~Yq~qV  326 (477)
T KOG2467|consen  254 L--RGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAM-----TPEFKEYQKQV  326 (477)
T ss_pred             c--cCCcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhC-----CHHHHHHHHHH
Confidence            6  67888887653322211100000001123343444333332 2444444344444443211     12245666777


Q ss_pred             HHHHHHHHHHhhhccCCCCCcccccCCcceEEe-c-----CCCHHHHHHHHHcccEEE------------eCCC-eEEec
Q 012238          385 KNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF-T-----GLNKAQSDNMTNKWHVYM------------TKDG-RISLA  445 (467)
Q Consensus       385 ~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~-~-----~l~~~~~~~ll~~~gI~v------------~~gg-Ris~~  445 (467)
                      .++...|.+.|. +.|.    +......-.++. +     |++...+++.++.-+|.+            .||| ||.-.
T Consensus       327 ~~Nakala~~l~-~~Gy----~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtP  401 (477)
T KOG2467|consen  327 LKNAKALASALI-SRGY----KLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTP  401 (477)
T ss_pred             HHHHHHHHHHHH-HcCc----eEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccch
Confidence            788888889998 8873    555444444433 2     567788888888777754            3445 87532


Q ss_pred             -----cCChhhHHHHHHHHHHHHH
Q 012238          446 -----GLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       446 -----~~~~~~i~~~~~~l~~~l~  464 (467)
                           +..+++++++.+-|.++++
T Consensus       402 AmTsRG~~e~df~~v~~fi~~av~  425 (477)
T KOG2467|consen  402 AMTSRGFGEEDFEKVADFIDRAVK  425 (477)
T ss_pred             hhcccCccHHHHHHHHHHHHHHHH
Confidence                 2367889988888888764

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=98.65  E-value=5e-05  Score=79.66  Aligned_cols=166  Identities=8%  Similarity=0.014  Sum_probs=113.3

Q ss_pred             hHHHH-HHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhC--C---
Q 012238          103 LDVVK-KAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF--P---  176 (467)
Q Consensus       103 ~~~v~-~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~--~---  176 (467)
                      ++.+. +.+....+.+ ...|...++...+.+.+.+++.+..|..- ...+ +  |.|||.|...+........  |   
T Consensus        96 ~paila~~~a~~~N~n-~~~~e~SP~~t~lE~~vi~~la~l~G~~~-~~G~-~--TsGGT~ANl~aL~~AR~~k~~p~a~  170 (608)
T TIGR03811        96 MPAILAYNYAMLWNGN-NVAYESSPATSQMEEEVGKEFATLMGYKN-GWGH-I--VADGSLANLEGLWYARNIKSLPFAM  170 (608)
T ss_pred             HHHHHHHHHHHHhCCC-CCccccCchHHHHHHHHHHHHHHHhCCCC-CCeE-E--eCChHHHHHHHHHHHHHhhhccchh
Confidence            44444 4444444443 24454555667777777777766655432 2223 4  7999998876532221110  0   


Q ss_pred             ---------------------------------------------C------CEEEEcCCCCcchHHHHhhCCC---CeE
Q 012238          177 ---------------------------------------------G------AKVLISSPTWGNHKNIFNDARV---PWS  202 (467)
Q Consensus       177 ---------------------------------------------g------d~Vlv~~P~y~~~~~~~~~~G~---~~~  202 (467)
                                                                   |      .+|+++.-.+..+...+..+|+   .++
T Consensus       171 ~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv  250 (608)
T TIGR03811       171 KEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVI  250 (608)
T ss_pred             hhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEE
Confidence                                                         0      1688888888889999999999   588


Q ss_pred             EeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCC--eeEEeccCCCCC
Q 012238          203 EYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNH--IPFFDVAYQGFA  275 (467)
Q Consensus       203 ~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~--~li~Deay~~~~  275 (467)
                      .||+  ++++.+|++.|++.+++.   ...+.+|+-+.+...+|.+=+.+++.+|++.++++|+  ++.+|.+|.++.
T Consensus       251 ~Vpv--D~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~  326 (608)
T TIGR03811       251 PVPV--DSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYG  326 (608)
T ss_pred             Eeec--CCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchh
Confidence            9998  456789999999998742   2344566767789999998887777777666688998  699999999864

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.62  E-value=7.2e-06  Score=79.77  Aligned_cols=261  Identities=14%  Similarity=0.060  Sum_probs=136.0

Q ss_pred             CCCEEEEcCCCCcchHHHHhhCCCCeEEeeee-cCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHH-HHHH
Q 012238          176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPE-QWEK  253 (467)
Q Consensus       176 ~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~-~l~~  253 (467)
                      .++.|+.+.-..-.-...+..+|.+++.+|.. +++....|.+.+++.+++......+.++++..   +...... ++++
T Consensus       100 ~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G~~~iLcvlttts---cfapr~~D~i~~  176 (389)
T PF05889_consen  100 KAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAKIEELGADNILCVLTTTS---CFAPRLPDDIEE  176 (389)
T ss_dssp             T--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHHCGGGEEEEEEESS---TTTTB----HHH
T ss_pred             CCceEEEeeccccchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHhCCCCeEEEEEecC---ccCCCCCccHHH
Confidence            67888887754433445567789999999853 23334567888888887654455555555432   3333333 4999


Q ss_pred             HHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhh
Q 012238          254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVA  333 (467)
Q Consensus       254 l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~  333 (467)
                      |+++|++||+..|+..||.--...    -...+......+.-.+++.|.-|+|-.|   +|-.++...++..+..     
T Consensus       177 IakiC~~~~IPhlvNnAYgvQ~~~----~~~~i~~a~~~GRvda~vqS~dkNF~VP---vGgai~As~~~~~i~~-----  244 (389)
T PF05889_consen  177 IAKICKEYDIPHLVNNAYGVQSSK----CMHLIQQAWRVGRVDAFVQSTDKNFMVP---VGGAIMASFDPSGILA-----  244 (389)
T ss_dssp             HHHHHHHHT--EEEEGTTTTT-HH----HHHHHHHHHHHSTCSEEEEEHHHHHCEE---SSHEEEEESSHHHHHH-----
T ss_pred             HHHHHHHcCCceEEccchhhhHHH----HHHHHHHHHhcCCcceeeeecCCCEEec---CCCcEEEecCHHHHHH-----
Confidence            999999999999999998642210    0111222223345567899999999654   4554444567777776     


Q ss_pred             HHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcc
Q 012238          334 VIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIG  413 (467)
Q Consensus       334 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g  413 (467)
                             +.+....-.+..|.+-..+-...|.-.    .|...+.++.+.+...++++.+.-+ +.+.. -.+.......
T Consensus       245 -------vs~~YpGRas~sp~ld~~itLl~LG~~----g~~~ll~~r~~~f~~l~erl~~~ae-e~~e~-ll~~p~N~is  311 (389)
T PF05889_consen  245 -------VSKEYPGRASASPSLDLFITLLSLGCT----GYGALLKERKASFPYLKERLKKWAE-EVGER-LLETPRNHIS  311 (389)
T ss_dssp             -------HHHTSHSHBTSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HTTEE-BSSSTT-SSE
T ss_pred             -------HHHHhhhhhhcccchHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhh-hcCCCCCCee
Confidence                   444333223333433322222222221    2333344455555444444444443 33310 0111112222


Q ss_pred             eEEec-CC---C---HHHHHHHHHcccEE----EeCCC-------------eEEe---ccCChhhHHHHHHHHHHHHH
Q 012238          414 MFSFT-GL---N---KAQSDNMTNKWHVY----MTKDG-------------RISL---AGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       414 ~f~~~-~l---~---~~~~~~ll~~~gI~----v~~gg-------------Ris~---~~~~~~~i~~~~~~l~~~l~  464 (467)
                      +.+-+ .+   +   ..++-.+|...+|.    +.+++             -|.+   -+++++|++.++++|+++++
T Consensus       312 ~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  312 MAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK  389 (389)
T ss_dssp             EEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred             EEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence            23222 22   1   24455555555763    44443             2222   24589999999999999875

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=98.60  E-value=2.4e-06  Score=78.78  Aligned_cols=172  Identities=20%  Similarity=0.239  Sum_probs=121.6

Q ss_pred             CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcC--CCCcchHH----------
Q 012238          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISS--PTWGNHKN----------  192 (467)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~--P~y~~~~~----------  192 (467)
                      .-|-+-|.+-.|+.+...       .-++=+|..+||+|+..+  +...+.|||+.+...  |+- ...+          
T Consensus        64 D~GRdtLe~vyA~vf~aE-------~a~VRpq~isGTHAI~~a--Lfg~LRpgDell~i~G~PYD-TLeevIG~rg~~~g  133 (416)
T COG4100          64 DLGRDTLERVYAQVFGAE-------AALVRPQIISGTHAIACA--LFGILRPGDELLYITGSPYD-TLEEVIGLRGEGQG  133 (416)
T ss_pred             ccchhHHHHHHHHHhccc-------cceeeeeeecchhHHHHH--HHhccCCCCeEEEecCCcch-hHHHHhccCCCCcc
Confidence            456667777777775443       344445668999999998  777889999887554  432 2222          


Q ss_pred             HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCC----CCCHHHHHHHHHHHHhc--CCeeE
Q 012238          193 IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGI----DPTPEQWEKIADVIQEK--NHIPF  266 (467)
Q Consensus       193 ~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~----~~~~~~l~~l~~~~~~~--~~~li  266 (467)
                      .++.+|+....+|+.  .++.+|++.+.+.++   ++++++.+   +-.+|.    .++.+++++++++.|+-  |++++
T Consensus       134 SL~dfgi~Y~~v~Lt--~~gkiD~~~v~~~i~---~~tkli~I---QRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivF  205 (416)
T COG4100         134 SLKDFGIKYKAVPLT--ADGKIDIQAVKTAIS---DRTKLIGI---QRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVF  205 (416)
T ss_pred             cHHHhCcceeecccc--cCCcccHHHHHHhcC---ccceEEEE---EeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEE
Confidence            346678888888884  356799999999998   67777776   344454    36789999999999974  79999


Q ss_pred             EeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCc--cceEEEecCCHHHHhh
Q 012238          267 FDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER--IGAMNVVCSSSDLAAR  328 (467)
Q Consensus       267 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R--iG~~~~v~~~~~~~~~  328 (467)
                      +|.+|.+|....   .+..+       .-.+..+|+-|+-| .|+-  -||+   ++.+++++.
T Consensus       206 VDNCYGEFvE~~---EPt~v-------GaDliAGSLIKNpG-GgiaktGGYi---aGk~~~ve~  255 (416)
T COG4100         206 VDNCYGEFVEEK---EPTHV-------GADLIAGSLIKNPG-GGIAKTGGYI---AGKAELVEA  255 (416)
T ss_pred             Eeccchhhhhcc---Ccccc-------chhhhccceeeCCC-Cceeecccee---echHHHHHh
Confidence            999999998542   22211       23577999999876 3321  2777   488888776

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=98.56  E-value=2e-05  Score=77.22  Aligned_cols=276  Identities=15%  Similarity=0.135  Sum_probs=154.3

Q ss_pred             cCCchhHHHHHHHHHHHh--C-CC---CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCc
Q 012238          157 GLSGTGSLRLAAALIERY--F-PG---AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS  230 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~--~-~g---d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  230 (467)
                      |.|+++++.++-.--...  . .|   ..++++......+....+.++.++..+|++ +.++.+|+..+.+.+.   +++
T Consensus       144 t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~-~~~~~~D~~k~~~~i~---eNt  219 (491)
T KOG1383|consen  144 TVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVELREVPLD-EGDYRVDPGKVVRMID---ENT  219 (491)
T ss_pred             ccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEEEeeecc-ccceEecHHHHHHHhc---cce
Confidence            789999954431110011  1 12   256666677788888999999999999996 4789999999999998   788


Q ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHh-cCCeeEEeccCCCCCC--CCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQE-KNHIPFFDVAYQGFAS--GSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       231 ~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~-~~~~li~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      +.++..-|+.|+|..   +..++|.++..+ +++.+.+|.+-.+|.-  +......+.   |-..+-.-|.+.+..=.|.
T Consensus       220 i~lv~~~~~~p~G~~---e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fd---Fr~p~V~Sisa~~HKYGl~  293 (491)
T KOG1383|consen  220 IMLVGSLPNFPTGEI---EDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFD---FRVPGVTSISADGHKYGLA  293 (491)
T ss_pred             EEEEEEcCCCCccch---hhHHHHHHHHHHHhCCceeecccCccccccccccCccccc---cCCCCceeEeeccceeeee
Confidence            999999999999984   566678887888 9999999999888864  211111111   1011112222333223445


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC----c---cCCCc--hHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP----M---YSNPP--VHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~---~~~~~--~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                      ++|  +||++  -.++++....       +.... .+...    .   .+-+.  ..+|++...-|..        +...
T Consensus       294 ~~G--~~~vl--~r~k~~~~~q-------~~~~~-~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~--------eGY~  353 (491)
T KOG1383|consen  294 PAG--SSWVL--YRNKELLPHQ-------LFFHT-DWLGGIYASPTLNGSRPGSQVAAQWAALMSLGE--------EGYR  353 (491)
T ss_pred             ecC--cEEEE--Ecccccccce-------EEEec-cccCccccCcccccCCcccHHHHHHHHHHHhhH--------HHHH
Confidence            566  58886  3555443320       00000 11111    1   11111  2233333222222        2344


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccc-cCCcceEEecC--CCHHHHHHHHHcccEEEeC----CC-eEEeccC--C
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFI-LRQIGMFSFTG--LNKAQSDNMTNKWHVYMTK----DG-RISLAGL--S  448 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~-~~~~g~f~~~~--l~~~~~~~ll~~~gI~v~~----gg-Ris~~~~--~  448 (467)
                      +..+++.+....+.+.++ ..+   ++..+ .|.-.+-+|-.  ++.-.+..++.++|-.+..    .+ -|++...  .
T Consensus       354 ~~~~~ive~~~~l~egie-~i~---~i~i~gkp~vs~~~~~s~~~~i~elsd~l~~~GW~lnalq~P~a~Hi~vt~~~~~  429 (491)
T KOG1383|consen  354 ENTQNIVETARKLREGIE-NIK---GIKIVGKPLVSFILFGSNDVNIFELSDLLRKKGWILNALQFPAAIHICVTRVHAR  429 (491)
T ss_pred             HHHHHHHHHHHHHHHhhh-ccc---cceecCCCcEEEEEccCCccchhhhhHHHHhcCcCccccCCCCceEEEEEeeecc
Confidence            555566677777888888 543   13333 34434333332  2322355666666765432    23 3443321  2


Q ss_pred             hhhHHHHHHHHHHHHHhc
Q 012238          449 LAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       449 ~~~i~~~~~~l~~~l~~~  466 (467)
                      ++--++++.-|+++++++
T Consensus       430 ~~~A~~~v~Di~~~~~el  447 (491)
T KOG1383|consen  430 EDVADRFVADIRKVVEEL  447 (491)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            233466777777776653

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=98.50  E-value=7.9e-05  Score=72.57  Aligned_cols=139  Identities=16%  Similarity=0.188  Sum_probs=102.6

Q ss_pred             CcCCC---CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhC--CC----CEEEEcCCCCcch
Q 012238          120 KEYLP---IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF--PG----AKVLISSPTWGNH  190 (467)
Q Consensus       120 ~~Y~~---~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~--~g----d~Vlv~~P~y~~~  190 (467)
                      +-|.|   .+|..++...+.+||....|.    +.|. +|.+.|.++-+....++....  .|    +.|+||+-.+.-.
T Consensus        96 HP~~pe~~vqG~l~li~~Lq~~L~~ITG~----Davs-LQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTN  170 (496)
T COG1003          96 HPFQPEEQVQGYLELIYELQEWLKEITGM----DAVS-LQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTN  170 (496)
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHhcCC----ceee-ccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCC
Confidence            44555   468888888888888765443    2333 355666665555433333332  33    5899999999888


Q ss_pred             HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012238          191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA  270 (467)
Q Consensus       191 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Dea  270 (467)
                      ...+...|.+++.|++  ++++.+|+++|++.+.   +++..+.+++|+   -.-+=.+.+.+|+++..++|-.+..|.+
T Consensus       171 PASAam~G~~VV~V~~--~~~G~VDlddLk~k~~---~~~AalMiTnPs---T~GvFE~~I~ei~~ivH~~Gg~vY~DGA  242 (496)
T COG1003         171 PASAAMAGFKVVVVKC--DENGNVDLDDLRAKAE---DNLAALMITNPS---TLGVFEEDIREICEIVHEAGGQVYYDGA  242 (496)
T ss_pred             hhhHhhcCceEEEEec--CCCCCccHHHHHHHhc---cceeEEEeccCc---ccccchhhHHHHHHHHHHcCCEEEecCc
Confidence            8888899999999999  4467799999999998   677788887665   3333467899999999999999999988


Q ss_pred             C
Q 012238          271 Y  271 (467)
Q Consensus       271 y  271 (467)
                      -
T Consensus       243 N  243 (496)
T COG1003         243 N  243 (496)
T ss_pred             c
Confidence            3

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.46  E-value=5.2e-05  Score=71.12  Aligned_cols=308  Identities=13%  Similarity=0.111  Sum_probs=170.8

Q ss_pred             hHHHHHHHHHHHhcCC---CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhC----
Q 012238          103 LDVVKKAENLMLERGE---NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF----  175 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~---~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~----  175 (467)
                      .|.+.+++++-.+.-.   ...|..  -..++.+-+++++..        +.+..  ++-|.+|.+.+..+...+.    
T Consensus        77 hpki~~aLqeq~~kLtlssrafYnd--~~~~f~~~vt~lf~~--------~kvlp--mnTGaEa~Eta~KLaR~wgy~~K  144 (427)
T KOG1402|consen   77 HPKIIKALQEQADKLTLSSRAFYND--VLGEFAEYVTKLFGY--------DKVLP--MNTGAEAVETACKLARKWGYRKK  144 (427)
T ss_pred             CHHHHHHHHHHHhHhhhhhHHHhhh--hHHHHHHHHHHhcCc--------ceeee--cccchhHHHHHHHHHHHHHHhhc
Confidence            5667777777654210   122322  234666667766432        35555  6777888888755554332    


Q ss_pred             --CCC-EEEE-cCCCCcc-hHHH---------HhhCCC----CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q 012238          176 --PGA-KVLI-SSPTWGN-HKNI---------FNDARV----PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (467)
Q Consensus       176 --~gd-~Vlv-~~P~y~~-~~~~---------~~~~G~----~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~  237 (467)
                        |.+ .+++ ....|.+ ...+         .+.+|-    .+..+|+       -|.+.|+.+++.  +....+++-.
T Consensus       145 ~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y-------~d~eale~~l~~--~~vaaFivEP  215 (427)
T KOG1402|consen  145 NIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPY-------GDAEALEVALKS--PNVAAFIVEP  215 (427)
T ss_pred             cCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeecc-------CCHHHHHHHhcC--CCeeEEEeec
Confidence              433 2332 2233321 1111         111111    1222232       378899999985  5566666666


Q ss_pred             CCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCC-Cccce
Q 012238          238 AHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGA  315 (467)
Q Consensus       238 p~NPTG~~~~-~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~  315 (467)
                      -+-.-|++.| +.-+++..++|++||+++|.||+-.++.-.+   ..+.. ...+-.++++++   .|.++ .| +.+..
T Consensus       216 IQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTG---k~la~-d~env~PDivil---gKalS-GG~~Pvsa  287 (427)
T KOG1402|consen  216 IQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTG---KLLAC-DYENVRPDIVIL---GKALS-GGVYPVSA  287 (427)
T ss_pred             cccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccC---cEEEe-ehhhcCCCeEEE---ecccc-CCeeeeEE
Confidence            6777787665 4679999999999999999999966665432   11111 011112344433   46665 33 23344


Q ss_pred             EEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012238          316 MNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL  395 (467)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l  395 (467)
                      +   .++.++.-.            ++......+.+.++++.+++.++|+   +..     -+...++.++.-+.|+..|
T Consensus       288 v---l~~~~im~~------------~~pgeHgsTyggNpLg~~vaiAale---vi~-----eekL~era~~lG~~l~~~L  344 (427)
T KOG1402|consen  288 V---LADDDIMLN------------IKPGEHGSTYGGNPLGCAVAIAALE---VIV-----EEKLVERAAKLGEILRDQL  344 (427)
T ss_pred             E---EecHHHHhc------------cCCCccccccCCChHHHHHHHHHHH---HHH-----HHHHHHHHHHHHHHHHHHH
Confidence            4   367766554            4444444445566677666666553   211     1356666777777788888


Q ss_pred             hhccCC--CCCcccccCCcceEEecCC-----C-HHHHH--HHHHcccEEEeCCC----eEEec-cCChhhHHHHHHHHH
Q 012238          396 SAKDKS--GKDWSFILRQIGMFSFTGL-----N-KAQSD--NMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAII  460 (467)
Q Consensus       396 ~~~~g~--~~~~~~~~~~~g~f~~~~l-----~-~~~~~--~ll~~~gI~v~~gg----Ris~~-~~~~~~i~~~~~~l~  460 (467)
                      . ++..  |+-.+..... |++.-+-+     + .+.+.  ..+++.|++..|-+    |++-. .++++++++.+++|.
T Consensus       345 ~-~l~~~~p~~v~~VRGr-Gl~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkptH~~IiRfaPPL~I~e~dl~eg~e~i~  422 (427)
T KOG1402|consen  345 N-KLQKKFPHVVKEVRGR-GLLNAIVINPSKTSGQDAWDVCLALKENGLLAKPTHGNIIRFAPPLVISEEDLREGIEAIE  422 (427)
T ss_pred             H-hccccccchhheeecc-ceEEEEEeccccccchhHHHHHHcccccccccCCCCCCeEEecCCcccCHHHHHHHHHHHH
Confidence            7 6532  2212333333 45533211     1 22222  33455798888864    77643 358899999999999


Q ss_pred             HHHH
Q 012238          461 DSYH  464 (467)
Q Consensus       461 ~~l~  464 (467)
                      +++.
T Consensus       423 k~i~  426 (427)
T KOG1402|consen  423 KTIA  426 (427)
T ss_pred             HHhc
Confidence            8874

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=7.4e-06  Score=78.35  Aligned_cols=329  Identities=15%  Similarity=0.078  Sum_probs=176.6

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHH--hcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLML--ERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~--~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+++||+...+..-.+.+.+-+.+...++..-  ..+..--|+...-...+.+.||++++.       ++.|+-   +-
T Consensus        93 G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~-------E~aivY---s~  162 (467)
T KOG1358|consen   93 GKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGT-------EDAIVY---SY  162 (467)
T ss_pred             CceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCC-------cceeee---cc
Confidence            458899998776433333322333333343331  112223376666677899999999755       455655   33


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC------CC----
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP------GG----  229 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~------~~----  229 (467)
                      |-.++..+  +-+...+||.|.+-.-.......-++...-.+.++..       .|+++++..+.+..      ++    
T Consensus       163 gF~ti~S~--ipafsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkh-------ndm~~lerll~E~~~~~~K~~k~~~~  233 (467)
T KOG1358|consen  163 GFSTIESA--IPAFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKH-------NDMEDLERLLPEQEDEDQKNPKKALT  233 (467)
T ss_pred             ccchhhhc--chhhhccCcEEEEehhhhHHHHHHHhhhhheeEEecC-------CCHHHHHHhccCcchhhhhccccccc
Confidence            33344433  2334568998888776666566655555555555533       46777766654321      11    


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH--HHhcCCeEEEEecCccCcc
Q 012238          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL--FATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~S~SK~~~  307 (467)
                      .+.+++-.---+||.+.+..   +|+++..||...+|.||.|+.-..+.   ....+..  -.+..+-.++++|++-.++
T Consensus       234 Rrfiv~EGl~~N~g~i~pl~---~iv~lk~Kyk~RvildEs~SfG~lg~---~GrGvteH~~v~~~~iDiv~~sm~~ala  307 (467)
T KOG1358|consen  234 RRFIVVEGLYANTGDICPLP---EIVKLKNKYKFRVILDESLSFGVLGK---TGRGVTEHFGVPITDIDIVTASMETALA  307 (467)
T ss_pred             eEEEEEEeeccCCCcccccH---HHHHHHhhheEEEEEecccccccccc---cCccccccCCCCccceeeeeeccccccc
Confidence            23444444556788877755   77777999999999999987444331   1111111  1123456788999998887


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc--cC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM--YS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  384 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~  384 (467)
                      -.|   |+.   ++.. ++-.            .+++....  ++ +.|+....++..++.-    .+|+.   .+.+.+
T Consensus       308 s~G---gFc---~G~~-~i~~------------hQrLSg~~Y~fSAslPp~la~aa~~ai~i----~~~~p---~~~~~L  361 (467)
T KOG1358|consen  308 SGG---GFC---AGKS-FIAD------------HQRLSGSGYCFSASLPPYLAGAAIKAILI----EEWNP---EIVQPL  361 (467)
T ss_pred             ccC---cee---ecce-eeEe------------eeeccccceeeeccCchhhhhhHHHHHHH----HhhCc---chhhhh
Confidence            554   676   3643 3322            33332222  11 2333333333333221    11221   233344


Q ss_pred             HHHHHHHHHHhhhccCCCCCcccccC-Ccc-eEEecCC---C--------HHHHHHHHHcccEEEeCC------------
Q 012238          385 KNVRQKLFDSLSAKDKSGKDWSFILR-QIG-MFSFTGL---N--------KAQSDNMTNKWHVYMTKD------------  439 (467)
Q Consensus       385 ~~~r~~l~~~l~~~~g~~~~~~~~~~-~~g-~f~~~~l---~--------~~~~~~ll~~~gI~v~~g------------  439 (467)
                      +.....+-+.|. ...   .+.+... ... .++...-   +        .+.+++.+.+ ++.++..            
T Consensus       362 ~~k~~~~H~~l~-~~s---~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~~  436 (467)
T KOG1358|consen  362 RAKVAKFHAALS-SNS---GFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPIP  436 (467)
T ss_pred             hccccccchhhh-cCC---ceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhh-cceehhhhhhhhcccCCCC
Confidence            444444444444 221   0122111 111 1222211   1        2335555555 7777654            


Q ss_pred             -C-eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          440 -G-RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 -g-Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                       + ||++. .+++++++++.+.|++....+
T Consensus       437 pSiri~~~a~~seeel~ra~~~ik~~~~~~  466 (467)
T KOG1358|consen  437 PSIRICVSAGMSEEELERAAELIKEVASAV  466 (467)
T ss_pred             CcEEEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence             1 99875 468999999999999886543

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=98.43  E-value=5.4e-05  Score=71.01  Aligned_cols=292  Identities=12%  Similarity=0.040  Sum_probs=160.1

Q ss_pred             HHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhC--CCCEEEEcCCC-Cc----chHHHHhhCCCCeEE
Q 012238          131 FNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF--PGAKVLISSPT-WG----NHKNIFNDARVPWSE  203 (467)
Q Consensus       131 lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~--~gd~Vlv~~P~-y~----~~~~~~~~~G~~~~~  203 (467)
                      +-..+|-++...      ++++++  +.+.+--++-.  +.+.+.  +|++|++++-. |+    .....++..|..   
T Consensus        81 lgdklApLiGA~------~~Evvv--~dtts~nl~k~--L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~---  147 (407)
T COG3844          81 LGDKLAPLIGAR------AGEVVV--TDTTSINLFKV--LAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG---  147 (407)
T ss_pred             HHHHhhhhhcCC------CCceEE--eCCcchHHHHH--HHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc---
Confidence            334455554443      778888  77766666654  444454  68999998833 22    223344444433   


Q ss_pred             eeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCCh
Q 012238          204 YRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (467)
Q Consensus       204 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~  283 (467)
                      +++    ...++++.+++.++   +.+.++++++.+.-||..++..   +|-+++.++|++++.|-+++--... .+-  
T Consensus       148 ~~~----~~~~~P~~~~~~~~---dd~AvV~L~~V~y~TGql~dm~---aiT~~AH~~galv~wDLAHsaGavp-~~L--  214 (407)
T COG3844         148 YDL----EGVIAPRALEEAIT---DDVAVVLLSHVNYKTGQLLDMR---AITALAHQHGALVGWDLAHSAGAVP-VDL--  214 (407)
T ss_pred             ccc----eeeeChHHHHHhhc---cceEEEEeccccccccceeeHH---HHHHHHHhcCceEEeehhcccCCcc-eee--
Confidence            222    23467888999888   6888999999999999998866   6666699999999999996533221 111  


Q ss_pred             hHHHHHHhcCCeEEEEecCccCcc-cCCCccceEEEecCCHHHHhhhhhhh------------HHHHHHHHHhhccCccC
Q 012238          284 SSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARCCEVA------------VIQVKSQLKRLARPMYS  350 (467)
Q Consensus       284 ~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~v~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~  350 (467)
                             ....-.+-+++-.|.++ -||- ++++.   ..++..++ .++-            ....+.....+.+....
T Consensus       215 -------h~~gaDfaigcsyKYLNgGPGa-pa~l~---v~~~h~e~-~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~g  282 (407)
T COG3844         215 -------HAAGADFAIGCSYKYLNGGPGA-PAGLF---VAPRHRER-SWPPLSGWWGHARPFAMEEVYAPGPGARRFLCG  282 (407)
T ss_pred             -------cccCCCeeeeeeceeccCCCCC-ceeEE---eccccccc-cccccccccCCCCcchhhhccCcCccccceeeC
Confidence                   11123344555566553 1332 22222   11111111 0000            00000001112222334


Q ss_pred             CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC-----cceEEecCCCHHHH
Q 012238          351 NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ-----IGMFSFTGLNKAQS  425 (467)
Q Consensus       351 ~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~-----~g~f~~~~l~~~~~  425 (467)
                      +++.++..++...|.-   ..  .-.+.+.+++--...+++.+.++ ......++....|.     |+-..+.--....+
T Consensus       283 t~~V~s~aal~~aLDi---fa--~~~i~~lR~kSlaLTd~fieLvE-a~~~~~~l~l~tPr~~~~rGsqvS~~hp~~~~V  356 (407)
T COG3844         283 TQPVLSLAALEGALDI---FA--DVDITELRKKSLALTDYFIELVE-ARCEYYGLTLVTPRAHEERGSQVSLYHPHGYQV  356 (407)
T ss_pred             CcchhhhHHHhhhhhh---hh--hcCHHHHHHhhhHHHHHHHHHHH-hccccCCcEEeccchhhhccceeeEecCcHHHH
Confidence            5555555555444431   11  11256677777777888888776 43211123333332     22112222244555


Q ss_pred             HHHHHcccEEEeCC--C--eEEeccC--ChhhHHHHHHHHHHHHHhc
Q 012238          426 DNMTNKWHVYMTKD--G--RISLAGL--SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       426 ~~ll~~~gI~v~~g--g--Ris~~~~--~~~~i~~~~~~l~~~l~~~  466 (467)
                      .+.|.++||...--  +  |+.|+.+  +-+++=.+++.|.+++++.
T Consensus       357 ~qaLi~rGVigD~R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~  403 (407)
T COG3844         357 MQALIDRGVIGDFREPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTL  403 (407)
T ss_pred             HHHHHHcCccccccCCCeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence            55555679875222  3  9888754  5588989999999998753

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.23  E-value=2.3e-06  Score=82.48  Aligned_cols=200  Identities=18%  Similarity=0.169  Sum_probs=38.4

Q ss_pred             CCchHHHHHHHHHHHhcCCCCcCCCCcchH-----HHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh
Q 012238          100 PYVLDVVKKAENLMLERGENKEYLPIEGLA-----AFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY  174 (467)
Q Consensus       100 p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~-----~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~  174 (467)
                      .++++.+.+++.+........+|.-..|-.     .+.+.++.+ .+       .+..++  +++...|+.++   +..+
T Consensus        16 s~l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~l-tg-------AeaA~V--vNnnaAAv~L~---l~~l   82 (367)
T PF03841_consen   16 SPLSEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCEL-TG-------AEAALV--VNNNAAAVLLA---LNTL   82 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc-cc-------cccccc--ccccccccccc---cccc
Confidence            334677777777765433334553322322     222233333 22       344455  68888888885   5566


Q ss_pred             CCCCEEEEcCCCC------cchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC--CCCC
Q 012238          175 FPGAKVLISSPTW------GNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT--GIDP  246 (467)
Q Consensus       175 ~~gd~Vlv~~P~y------~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT--G~~~  246 (467)
                      .+|.+|+++.-.-      +...++++..|++++++-..+    .-.++++++++.   ++|.+++-.++.|-.  |..-
T Consensus        83 a~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGttN----~t~~~Dye~AI~---e~Ta~ll~Vh~Sn~~i~GFt~  155 (367)
T PF03841_consen   83 AKGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTTN----RTHLSDYEKAIT---ENTAALLKVHTSNFRIQGFTG  155 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccc----cccccccccccc---ccccccccccccccccccccc
Confidence            6788888876322      346678889999999997742    345778888898   677777766666653  4433


Q ss_pred             CHHHHHHHHHHHHhcCCeeEEeccCCCCC----CCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238          247 TPEQWEKIADVIQEKNHIPFFDVAYQGFA----SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (467)
Q Consensus       247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (467)
                      .+ .++++++++++||+++|+|..-..+.    ++ . .+.+.+..+...+ -.++++|=.|.+|-|  ..|.++   +.
T Consensus       156 ~~-~~~el~~la~~~~lp~i~DlgsG~l~dl~~~g-l-~~Ep~v~~~~~~G-aDlV~fSGdKlLGGP--QaGiI~---Gk  226 (367)
T PF03841_consen  156 EV-SLEELAELAKEHGLPVIVDLGSGLLVDLSPYG-L-PDEPTVQEYLAAG-ADLVTFSGDKLLGGP--QAGIIV---GK  226 (367)
T ss_dssp             ------HHHHHHHHHT--EEEE-TTHHHHHHHTT------------CCCCT--SEEEEETTSSSSS---S-EEEE---EE
T ss_pred             cc-cHHHHHHHHhhcCCcEEEECCCCCCcCccccc-C-ccccHHHHHhhcC-CCEEEEECCCcCCCC--CeEEEE---eC
Confidence            33 47788888999999999998831111    11 1 1122333333333 347788999998754  468874   99


Q ss_pred             HHHHhh
Q 012238          323 SDLAAR  328 (467)
Q Consensus       323 ~~~~~~  328 (467)
                      ++++++
T Consensus       227 k~lI~~  232 (367)
T PF03841_consen  227 KELIEK  232 (367)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999998

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.21  E-value=0.00041  Score=75.74  Aligned_cols=313  Identities=15%  Similarity=0.171  Sum_probs=163.2

Q ss_pred             EEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCc-----c----hHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           86 LNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE-----G----LAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        86 i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~-----G----~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      .-++.|.|    +. ..|+.+.+.+.+.  .++...|.|.+     |    +-++.+.++++..-.      ..|.-+  
T Consensus        67 ~fig~G~y----~~-~~p~~i~r~v~~~--p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtGm~------~aNaSl--  131 (939)
T TIGR00461        67 SYIGMGYY----GT-ILPPVIQRNLLEN--PGWYTAYTPYQPEISQGRLEALLNFQTVVSDLTGLP------VANASL--  131 (939)
T ss_pred             ccCCCCcC----CC-cCChHHHHHHHhC--chhhhcCCCCChhhhhHHHHHHHHHHHHHHHHHCCC------hhhhhc--
Confidence            34467776    22 2366666554432  34446677643     3    456667777774222      345545  


Q ss_pred             cCCchhHHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHHh----hCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcE
Q 012238          157 GLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~-~~gd~Vlv~~P~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (467)
                      ..++|.+.+.+.+....- .++++|+|++-.++.+...++    ..|++++.++.          +.+++.+     .+.
T Consensus       132 ~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~~----------~~l~~~~-----~~~  196 (939)
T TIGR00461       132 LDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVDC----------SDIKKAV-----DVF  196 (939)
T ss_pred             cchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEcH----------HHHhhcC-----CEE
Confidence            677888777652221111 134899999999988876555    77888777643          3444333     345


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC--
Q 012238          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY--  309 (467)
Q Consensus       232 ~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~--  309 (467)
                      .+++.+|+ -.|.+.   ++++|+++++++|.+++++.--..+.-  + .++      -+.+-+ |++++ +|.||.|  
T Consensus       197 ~v~~q~Pn-~~G~ie---d~~~i~~~~h~~gal~~~~ad~~al~l--l-~~P------ge~GaD-i~vg~-~q~fg~p~g  261 (939)
T TIGR00461       197 GCLLQYPA-TDGSIL---DYKQLIDALHSHKSLVSVAADLMALTL--L-TPP------GHYGAD-IVLGS-SQRFGVPMG  261 (939)
T ss_pred             EEEEECCC-CCeEEe---cHHHHHHHHHHcCCEEEEEechHHhCC--c-CCH------HHcCCc-EEeeC-CCccCCCCC
Confidence            66666664 567764   578899999999999998543111111  0 110      122334 43554 3444432  


Q ss_pred             --CCccceEEEecCCHHHHhh----------hhhh--hH---HHHHHH-HHhhccCccCCCchHHHHHHHHHhCChhhHH
Q 012238          310 --AERIGAMNVVCSSSDLAAR----------CCEV--AV---IQVKSQ-LKRLARPMYSNPPVHGARIVANVVGNPALFD  371 (467)
Q Consensus       310 --G~RiG~~~~v~~~~~~~~~----------~~~~--~~---~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~  371 (467)
                        |--.|++.   ..+++++.          |.+.  ++   .+-+.| +++-..  ++|.-. .|...+ ...  .++-
T Consensus       262 ~GGP~aG~~a---~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekA--tSNICt-~qaL~a-~~a--~~Y~  332 (939)
T TIGR00461       262 YGGPHAAFFA---VKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKA--TSNICT-AQVLLA-NVA--SSYC  332 (939)
T ss_pred             CCCCceeeee---ecHhhHhhCCCCceeEEecCCCCccceeeccccccccccccc--CcchhH-HHHHHH-HHH--HHHH
Confidence              33356663   33333332          0000  00   000000 111111  111100 111111 000  0000


Q ss_pred             HH--HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceE--EecC---CCHHH-HHHHHHcccEEEeCCC---
Q 012238          372 EW--KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF--SFTG---LNKAQ-SDNMTNKWHVYMTKDG---  440 (467)
Q Consensus       372 ~~--~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f--~~~~---l~~~~-~~~ll~~~gI~v~~gg---  440 (467)
                      .|  .+.++++.++...+..++.+.|. +.|+    +...+  .||  +.+.   .+.+. .+++++ +||.+...+   
T Consensus       333 ~~~G~~GL~~iA~~~~~~a~~l~~~L~-~~G~----~~~~~--~fF~~~~v~~~~~~~~~i~~~~~~-~gi~l~~~~~~~  404 (939)
T TIGR00461       333 VYHGPKGLKNIARRIHSLTSILANGLE-NDPH----ELINK--TWFDTLTVKVGNGISSELLKAAEE-FNINLRAVDTTT  404 (939)
T ss_pred             HHHCHHHHHHHHHHHHHHHHHHHHHHH-hCCC----cccCC--CccceEEEEeCCCCHHHHHHHHHH-CCCeeeecCCCE
Confidence            01  34577888888888899999999 7773    44333  334  1122   23344 555554 699887542   


Q ss_pred             -eEEeccC-ChhhHHHHHHHHH
Q 012238          441 -RISLAGL-SLAKCEYLADAII  460 (467)
Q Consensus       441 -Ris~~~~-~~~~i~~~~~~l~  460 (467)
                       ++|+... ++++++.+++.+.
T Consensus       405 i~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       405 VGIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             EEEEeecCCCHHHHHHHHHHhc
Confidence             7777654 6688999998884

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=98.13  E-value=0.00023  Score=66.02  Aligned_cols=279  Identities=13%  Similarity=0.136  Sum_probs=145.2

Q ss_pred             ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-h------hCCC-----CeEEe-eeecCCC--CC--
Q 012238          151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-N------DARV-----PWSEY-RYYDPKT--VG--  213 (467)
Q Consensus       151 ~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~-~------~~G~-----~~~~v-~~~~~~~--~~--  213 (467)
                      -+++  +++|++|..+++++...+..-..|++.+-.|.++.... +      ..|.     +++.+ |+.+--.  +.  
T Consensus       104 vc~F--~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~  181 (452)
T KOG1403|consen  104 VCFF--VNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDK  181 (452)
T ss_pred             EEEE--ecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccc
Confidence            3455  89999999999777666665555777776665543221 1      1111     12222 2211000  00  


Q ss_pred             ---------CChhhHHHHHHc---CCCCcEEEEeCCCCCCCCCCCCHH-HHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012238          214 ---------LDFEGMIADIKA---APGGSFILLHGCAHNPTGIDPTPE-QWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (467)
Q Consensus       214 ---------~d~~~l~~~l~~---~~~~~~~i~i~~p~NPTG~~~~~~-~l~~l~~~~~~~~~~li~Deay~~~~~~~~~  280 (467)
                               .=-+.+++.+++   ...+...++--+-+.--|.++|++ ..+++++..+.+|-+.|.||+--+|.-  ..
T Consensus       182 ~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGR--vG  259 (452)
T KOG1403|consen  182 MYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGR--VG  259 (452)
T ss_pred             cCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccc--cc
Confidence                     111334444432   122333444344455567766664 578899999999999999999666653  22


Q ss_pred             CChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHH
Q 012238          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV  360 (467)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  360 (467)
                      ...|..... .--+++   -.+.|-+| .|..++.++   ..+++.++        |...-..+..  +.+.++.+.++.
T Consensus       260 ~hyWafq~y-~fiPDI---VtmgKpmG-NGhPVa~Va---ttkeIA~A--------f~atgv~YFN--TyGGnPVsCAv~  321 (452)
T KOG1403|consen  260 SHYWAFQTY-NFIPDI---VTMGKPMG-NGHPVAAVA---TTKEIAQA--------FHATGVEYFN--TYGGNPVSCAVG  321 (452)
T ss_pred             hhhhhhhhh-ccccch---heecccCC-CCCeeeEEe---ccHHHHHH--------hccccceehh--ccCCCchhHHHH
Confidence            344543211 111232   34679998 899999985   77777777        3331111111  223344455555


Q ss_pred             HHHhC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccC--CcceEEecCC---------CHH---
Q 012238          361 ANVVG---NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR--QIGMFSFTGL---------NKA---  423 (467)
Q Consensus       361 ~~~L~---~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~--~~g~f~~~~l---------~~~---  423 (467)
                      .+.|+   ++.           ..+..++.-+.|...|+ ++...  ...+..  ..|.|+=+++         +.+   
T Consensus       322 laVm~v~e~E~-----------Lq~ha~~vG~~L~~lL~-~~k~k--h~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~  387 (452)
T KOG1403|consen  322 LAVMRVCEDEN-----------LQEHAQQVGEKLEVLLR-RLKQK--HECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAH  387 (452)
T ss_pred             HHHHHHHhhhh-----------HHHHHHHHHHHHHHHHH-HHhhh--ccceeccccceEEEeeeeecccccCCCcHHHHH
Confidence            54443   322           22222222333333333 22110  122222  2355543333         112   


Q ss_pred             -HHHHHHHcccEEEeCCC--e--EEe---ccCChhhHHHHHHHHHHHHHh
Q 012238          424 -QSDNMTNKWHVYMTKDG--R--ISL---AGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       424 -~~~~ll~~~gI~v~~gg--R--is~---~~~~~~~i~~~~~~l~~~l~~  465 (467)
                       .+.+|.+.++|++...|  |  +-+   -+.++++.++.+..|.+++..
T Consensus       388 ~~v~rlke~y~VLlsaDGPh~NilKiKPPmCFneena~e~v~~ld~iLT~  437 (452)
T KOG1403|consen  388 WVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGLDEILTV  437 (452)
T ss_pred             HHHHHHHHhhhEEEecCCCCCceeecCCCcccChhhHHHHHHHHHHHHHH
Confidence             24577777899998886  1  111   112678888888888888753

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.10  E-value=0.0011  Score=63.69  Aligned_cols=292  Identities=17%  Similarity=0.142  Sum_probs=145.6

Q ss_pred             hHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH-HHHhhCCCCeEEeee
Q 012238          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK-NIFNDARVPWSEYRY  206 (467)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~-~~~~~~G~~~~~v~~  206 (467)
                      ..+.++.+.++|.-..     .-+|+++ -.|+|+.+..+  .+.++.+...-.+-.-.|.... .-++..+..+.....
T Consensus        52 ~~~a~~~lreLl~iPd-----~Y~Vlfl-qGGat~qf~~~--p~nLl~~~~~~yv~~g~Ws~~a~~eA~~~~~~~~~~~~  123 (365)
T COG1932          52 LEEAEKDLRELLNIPD-----DYKVLFL-QGGATGQFAMA--PMNLLGKRGTDYVDTGAWSEFAIKEAKKVGKQPKLIDA  123 (365)
T ss_pred             HHHHHHHHHHHhCCCC-----CceEEEE-cCccHHHHHHH--HHhhhcccCceeEeeeehhHhHHHHHHHhccccccccc
Confidence            3445555666654321     1156662 35667777766  4555543322034445554332 233444432222211


Q ss_pred             e-cCC--CCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCCh
Q 012238          207 Y-DPK--TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (467)
Q Consensus       207 ~-~~~--~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~  283 (467)
                      . .+.  +.-++++...  +.   ++...+..|.-+.-+|+-++.  ...+   .  .+.++|.|.. +.+....  .|.
T Consensus       124 ~~~~~~~~~iP~~~~~~--~~---~~~ayv~~~~NeTi~Gv~v~~--~p~~---~--~~~~~v~D~S-S~ilsr~--iDv  188 (365)
T COG1932         124 RIEEAGYGSIPDLSKWD--FS---DNDAYVHFCWNETISGVEVPE--LPDI---G--SDGLLVADAS-SAILSRP--IDV  188 (365)
T ss_pred             ceeccCccCCCChhhcc--cC---CCccEEEEecCCcccceEccC--CCCC---C--CCceEEEecc-cHHhcCC--CCh
Confidence            1 122  2234444332  22   222223334333344765552  1112   1  1267888887 3333222  222


Q ss_pred             hHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhh-HHHHHHHHHhh-ccCccCCCchHHHHHHH
Q 012238          284 SSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVA-VIQVKSQLKRL-ARPMYSNPPVHGARIVA  361 (467)
Q Consensus       284 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~~~~~~~~~~~~~~  361 (467)
                      .         .-.++..|.-|++|..|  ++.++   -.++++++ ++.. .+.+....... ...++..||.++-....
T Consensus       189 s---------k~dviyagaQKnlGpaG--ltvvI---vr~~~l~r-~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~  253 (365)
T COG1932         189 S---------KYDVIYAGAQKNLGPAG--LTVVI---VRPDLLER-AESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLG  253 (365)
T ss_pred             h---------HcceEEEehhhccCccc--eEEEE---EcHHHHhc-ccccCCchHhhchhhhccCCccCCcHHHHHHHHH
Confidence            1         12466788999999888  56664   56777776 1111 22222222222 22334445554433332


Q ss_pred             HHhCChhhHHHHHHH---HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEec-----CCCHHHHHHHHHccc
Q 012238          362 NVVGNPALFDEWKAE---MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT-----GLNKAQSDNMTNKWH  433 (467)
Q Consensus       362 ~~L~~~~~~~~~~~~---l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~-----~l~~~~~~~ll~~~g  433 (467)
                      ..+       +|...   ++.+.++-+++.+.|++.+. +.++-...-......-+-+.+     .++..++.++.+ +|
T Consensus       254 lv~-------~Wlk~~GGl~~~~~rn~~ka~~LY~~id-~s~fy~~~v~~~~RS~mnV~f~~~~~~ld~~fv~eae~-~g  324 (365)
T COG1932         254 LVF-------KWLKSQGGLEALEARNQAKAQLLYDWID-KSDFYRNLVAKANRSRMNVTFTLVDAELDKGFVAEAEA-AG  324 (365)
T ss_pred             HHH-------HHHHHcCCHHHHHHHHHHHHHHHHHHHH-hCCccccccchhhccceeEEEEcCcHHHHHHHHHHHHH-cC
Confidence            222       23322   67888888899999999998 655311000001122222222     235556666655 47


Q ss_pred             EEEeCC-----C-eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          434 VYMTKD-----G-RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       434 I~v~~g-----g-Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +....|     | |+|+.. ++.++++.+++-+++..++.
T Consensus       325 l~~lkGhr~vgGmRasiynA~~~e~veaL~~fm~~f~~~~  364 (365)
T COG1932         325 LIYLKGHRSVGGLRASIYNAVPLEDVEALTDFMDWFEETY  364 (365)
T ss_pred             CceeccccCCCceeeeeecCCCHHHHHHHHHHHHHHHHhh
Confidence            766665     4 999754 58899999999998887653

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=98.02  E-value=0.0027  Score=63.54  Aligned_cols=318  Identities=15%  Similarity=0.156  Sum_probs=143.4

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC-----Ccc----hHHHHHHHHHHHhCCCCcccccCceee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-----IEG----LAAFNKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~-----~~G----~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      ..--++.|.|    .. .+|+.+.+.+.+  ...+...|.|     .+|    +-++...++++. +   .+  ..|.-+
T Consensus        66 ~~~fiG~G~y----~~-~~P~~i~~~i~~--~~ef~TaYtPYQpEisQG~Lq~lfe~Qs~i~eLT-G---md--vaNaSl  132 (429)
T PF02347_consen   66 YTSFIGAGSY----TH-YVPAVIDRNILS--RPEFYTAYTPYQPEISQGRLQALFEYQSMICELT-G---MD--VANASL  132 (429)
T ss_dssp             TTS---CTTT----------HHHHH-HHC--CHHCCCS-STTSGGGBHHHHHHHHHHHHHHHHHH-T---SS--EE-SEB
T ss_pred             CCcccccccc----Cc-eeChhhcCcccc--ChhhhccCCCCCcHHHHHHHHHHHHHHHHHHHhh-C---CC--ccCCCC
Confidence            3344566666    22 335555442222  1233356666     334    455666677773 2   22  123333


Q ss_pred             eecCCchhHHHHHHHHHHHhC-CCCEEEEcCCCCcchHHHHh----hCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCC
Q 012238          155 VQGLSGTGSLRLAAALIERYF-PGAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~-~gd~Vlv~~P~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (467)
                        -.|++..-+.+.+...... ..++|+++.-.++.+...++    ..|.+++.++..+  +...|           .++
T Consensus       133 --yd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~--~~~~d-----------~~~  197 (429)
T PF02347_consen  133 --YDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDE--DGTTD-----------DDD  197 (429)
T ss_dssp             --SSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBT--TCSB------------STT
T ss_pred             --CChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccc--cCCcc-----------ccC
Confidence              4677776666533332322 34699999999998887544    5788888888742  23334           267


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC
Q 012238          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (467)
                      +..+++.+|| -.|.+-   ++++|+++++++|.++++ .+ -...-+...       .-.+.+-+ |++++ +|.||.|
T Consensus       198 ~a~v~vq~Pn-~~G~~e---d~~~i~~~~h~~gal~~~-~a-d~~aL~~l~-------~Pge~GAD-I~vg~-~Q~fg~p  262 (429)
T PF02347_consen  198 TAAVMVQNPN-TFGVFE---DIKEIADIAHAAGALVIV-GA-DPNALGGLK-------SPGEYGAD-IVVGE-HQTFGIP  262 (429)
T ss_dssp             EEEEEEESS--TTSB-----THHHHHHHHHHTT-EEEE-CG-GCCGCCTC---------GGGGT-S-EEEEC-CTTTT--
T ss_pred             eEEEEeecCC-CCceEe---eHHHHHHHHHHcCCEEEE-ec-CHHHHhCcC-------ChhhcCcc-EEeeC-CCCCccc
Confidence            7888888775 356643   388999999999988886 33 222222110       11123334 44766 7877754


Q ss_pred             ----CCccceEEEecCCHHHHhh----------hhhh--h----HHHHHHHHHhhccCccCCCch-H-HHHHHHHHhCCh
Q 012238          310 ----AERIGAMNVVCSSSDLAAR----------CCEV--A----VIQVKSQLKRLARPMYSNPPV-H-GARIVANVVGNP  367 (467)
Q Consensus       310 ----G~RiG~~~~v~~~~~~~~~----------~~~~--~----~~~~~~~l~~~~~~~~~~~~~-~-~~~~~~~~L~~~  367 (467)
                          |--.|++.   ..++++..          |.+.  +    +-.=..++++-+.....+.+. + +..++..+...+
T Consensus       263 ~~~GGP~~G~~a---~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G  339 (429)
T PF02347_consen  263 MGFGGPGAGFFA---VREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLG  339 (429)
T ss_dssp             -CCC-S--EEEE---E-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHH
T ss_pred             CCCCCCCeeeEE---EhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhC
Confidence                33356663   33333332          0000  0    000001122222111112222 1 111111111111


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEec--CCCHHHHHHHHHc---ccEEEeCC--C
Q 012238          368 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT--GLNKAQSDNMTNK---WHVYMTKD--G  440 (467)
Q Consensus       368 ~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~--~l~~~~~~~ll~~---~gI~v~~g--g  440 (467)
                            .+.+++..++...+..++.+.|. +...   ..+  ...-||-++  ....+.+.+++++   .|+....-  +
T Consensus       340 ------~~GL~~iA~~~~~~A~yl~~~L~-~~~~---~~~--~~~~f~e~v~~~~~~~~~~~l~~~~~~~gl~~~~~~~~  407 (429)
T PF02347_consen  340 ------PEGLREIAERIHLNAHYLAERLK-KIYG---LPF--DNPFFFEFVVVFSKDKEVEELLKRGIEGGLNLRYPDDG  407 (429)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHC-CTTB---ECS--SSSSBSSEEEEESS-HHHHHHHHTT----EEEGGG-SS
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHH-HhcC---ccc--CCCCceeeeeecCCcHHHHHHHHHHHhcCCCccccCCC
Confidence                  46688999999999999999999 6521   222  222343222  2222334444443   35443221  2


Q ss_pred             e--EEeccC-ChhhHHHHHHHH
Q 012238          441 R--ISLAGL-SLAKCEYLADAI  459 (467)
Q Consensus       441 R--is~~~~-~~~~i~~~~~~l  459 (467)
                      .  ||+... ++++++.+++++
T Consensus       408 ~~li~~TE~~t~edid~lv~~f  429 (429)
T PF02347_consen  408 ALLICVTETRTKEDIDRLVEAF  429 (429)
T ss_dssp             EEEEE--TT--HHHHHHHHH--
T ss_pred             eEEEEccCCCCHHHHHHHHhcC
Confidence            3  444432 567888887754

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=97.75  E-value=0.036  Score=54.51  Aligned_cols=321  Identities=12%  Similarity=0.150  Sum_probs=164.4

Q ss_pred             EecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCC-----cc----hHHHHHHHHHHHhCCCCcccccCceeeeec
Q 012238           87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI-----EG----LAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (467)
Q Consensus        87 ~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~-----~G----~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (467)
                      -++.|.|    +. ++|+.|.+.+.+  +..+...|+|.     +|    +-++...++++.    |.++.  |--+  -
T Consensus        79 fiG~GyY----~~-~~P~vI~rnile--~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLT----Gm~VA--NASm--~  143 (450)
T COG0403          79 FIGAGYY----DT-YTPPVILRNILE--NPEWYTAYTPYQPEISQGRLEALFEFQTLVADLT----GLDVA--NASM--L  143 (450)
T ss_pred             hccCccc----CC-cCcHHHHHHhhc--CccccccCCCCchhhhhHHHHHHHHHHHHHHHHh----CCCcc--cchh--h
Confidence            5677777    32 346666644433  34556778773     33    445666666663    22222  3323  4


Q ss_pred             CCchhHHHHHHHHHHHhC--CCCEEEEcCCCCcchHHHHh----hCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcE
Q 012238          158 LSGTGSLRLAAALIERYF--PGAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (467)
Q Consensus       158 ~ggt~al~l~~~~l~~~~--~gd~Vlv~~P~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (467)
                      -++|.+-+.+.+.. ...  +..+++|+.-+|+.+...++    -.|.+++.++.+       |.+.+++. ..  ..+.
T Consensus       144 DeaTAaAEAm~ma~-r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-------d~~~l~~~-~~--~~~~  212 (450)
T COG0403         144 DEATAAAEAMLMAK-RVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-------DLDDLESA-DD--GDVF  212 (450)
T ss_pred             hhHHHHHHHHHHHH-HhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-------hhhhhhhc-cc--cCeE
Confidence            67777777653222 333  35899999999999988776    345566655541       67777776 32  4556


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc--CCeEEEEecCcc---Cc
Q 012238          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR--GMELLVAQSYSK---NL  306 (467)
Q Consensus       232 ~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK---~~  306 (467)
                      .+++-+   |...-....++.+|.+.++++|.++++=.   +         +.++-.+...  ..-.|++++-.-   -+
T Consensus       213 gv~vQy---P~~~G~~~~d~~~l~~~~h~~~al~~v~a---D---------plaL~LL~pPGe~GADIvvG~~QrfGvPm  277 (450)
T COG0403         213 GVLVQY---PNTFGIVEEDLRALIEAAHSAGALVIVAA---D---------PLALGLLKPPGEFGADIVVGSAQRFGVPM  277 (450)
T ss_pred             EEEEec---CCCCCccchhHHHHHHHHhhcCCEEEEEe---c---------hhHhhccCCccccCCceEEecCcccCCCc
Confidence            666544   44433456679999999999998776521   1         1111111111  123566666443   22


Q ss_pred             ccCCCccceEEEecCCHHHHhh----------hhh--hhH---HHH-HHHHHhhccCccCCCchHHHHHHHHHhCChhhH
Q 012238          307 GLYAERIGAMNVVCSSSDLAAR----------CCE--VAV---IQV-KSQLKRLARPMYSNPPVHGARIVANVVGNPALF  370 (467)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~----------~~~--~~~---~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~  370 (467)
                      |..|-..||..   ..+++.+.          |.+  .++   .+= ..++++-+.....+.+......++      .++
T Consensus       278 gfGGPhag~fA---~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~A------s~y  348 (450)
T COG0403         278 GFGGPHAGYFA---VKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAA------SMY  348 (450)
T ss_pred             CCCCcceeeee---EhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHH------HHH
Confidence            33355567774   22333222          000  000   000 111222222111122111101111      111


Q ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEE--ecCCCHHHHHHHHH---cccEEEeCC--Ce
Q 012238          371 DEW--KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFS--FTGLNKAQSDNMTN---KWHVYMTKD--GR  441 (467)
Q Consensus       371 ~~~--~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~--~~~l~~~~~~~ll~---~~gI~v~~g--gR  441 (467)
                      .-|  .+.+.++.++..+...++.+.|+ +.+.  +++....  .||-  .+.+..+....+++   ..|+-+..-  ++
T Consensus       349 ~~~hGp~GLk~iA~r~~~~a~~la~~L~-~~~~--g~~~~~~--~fFdt~~v~~~~~~~~~l~~~~~~~G~~L~~~~~~~  423 (450)
T COG0403         349 AVYHGPQGLKEIAERIHRLAAYLAAGLK-EIGA--GVELVFD--HFFDTFTVRVPEEVAEALLAAAIAGGINLRRVDADT  423 (450)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHHHh-hcCC--ceEeccc--cceeeEEEecchhHHHHHHHHHHhcCCceeeecCCc
Confidence            111  35688899999999999999998 7652  1333322  4552  23443233333332   246655443  24


Q ss_pred             EEec--cC-ChhhHHHHHHHHHHH
Q 012238          442 ISLA--GL-SLAKCEYLADAIIDS  462 (467)
Q Consensus       442 is~~--~~-~~~~i~~~~~~l~~~  462 (467)
                      +.++  .. ++++++.+++++...
T Consensus       424 ~~ia~tEt~t~~~i~~l~~~~~~~  447 (450)
T COG0403         424 VLIALTETTTKEDIDALVAAFGGV  447 (450)
T ss_pred             eEEEeecccCHHHHHHHHHHHhhh
Confidence            4443  22 467888888777654

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=97.73  E-value=0.00086  Score=65.94  Aligned_cols=151  Identities=13%  Similarity=0.034  Sum_probs=97.3

Q ss_pred             CcCCCCcchHHHHHHHHHHHhCCCCccc------ccCceeeeecCCchhHHHHHHHHHHH-------hCCC---------
Q 012238          120 KEYLPIEGLAAFNKVTAELLFGADNSVL------KEQRVATVQGLSGTGSLRLAAALIER-------YFPG---------  177 (467)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~------~~~~i~~~~t~ggt~al~l~~~~l~~-------~~~g---------  177 (467)
                      +.+...+-..||..-+.+||....+.+.      ..+...++| ..++++..++  +++.       +..+         
T Consensus       103 FtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ-~tases~lva--llaaR~~~i~~~k~~~p~~~e~~~  179 (511)
T KOG0628|consen  103 FTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQ-GTASESVLVA--LLAARTEKIEEIKSRPPELHESSV  179 (511)
T ss_pred             ceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEe-cCcchhHHHH--HHHHHHHHHHHhhcCCCcccchhh
Confidence            3444556678899888888865433211      011122222 3345555554  2221       1122         


Q ss_pred             --C-EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC---CCcEEEEeCCCCCCCCCCCCHHHH
Q 012238          178 --A-KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP---GGSFILLHGCAHNPTGIDPTPEQW  251 (467)
Q Consensus       178 --d-~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~i~i~~p~NPTG~~~~~~~l  251 (467)
                        + .+..++-+.......+...|++...++.+  .+++++.+.|.+++++.-   -.+.+++.+-.   |-.+-.-+++
T Consensus       180 ~~~lV~Y~SDqahssveka~~i~~VklR~l~td--~n~~mr~~~L~~AIe~D~arGlIPf~v~at~G---TT~~ca~D~l  254 (511)
T KOG0628|consen  180 LARLVAYCSDQAHSSVEKACLIAGVKLRALPTD--ENFGMRGDTLRKAIEEDIARGLIPFFVCATLG---TTSSCAFDEL  254 (511)
T ss_pred             hhhheEEecCcccchHHHhHhhcceeEEEeecc--cCcCCCHHHHHHHHHHHHhCCCccEEEEEeec---CccccccccH
Confidence              1 34555677778888888899999999984  389999999999998731   22344443322   2233446789


Q ss_pred             HHHHHHHHhcCCeeEEeccCCCCCCCC
Q 012238          252 EKIADVIQEKNHIPFFDVAYQGFASGS  278 (467)
Q Consensus       252 ~~l~~~~~~~~~~li~Deay~~~~~~~  278 (467)
                      .+|..+|+++|+|+.+|.+|.+-.+..
T Consensus       255 ~elg~Vc~~~glWLHVDAAYAGsa~iC  281 (511)
T KOG0628|consen  255 EELGPVCREEGLWLHVDAAYAGSAFIC  281 (511)
T ss_pred             HHhcchhhhcCEEEEeehhhccccccC
Confidence            999999999999999999999887754

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=97.49  E-value=0.013  Score=57.42  Aligned_cols=87  Identities=14%  Similarity=0.072  Sum_probs=61.7

Q ss_pred             EcCCCCcchHHHHhhCC---CCeEEeeeecCCCCCCChhhHHHHHHcCCCC---cEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012238          182 ISSPTWGNHKNIFNDAR---VPWSEYRYYDPKTVGLDFEGMIADIKAAPGG---SFILLHGCAHNPTGIDPTPEQWEKIA  255 (467)
Q Consensus       182 v~~P~y~~~~~~~~~~G---~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~---~~~i~i~~p~NPTG~~~~~~~l~~l~  255 (467)
                      .++-++......+..+|   -.++.|++  ++.+.+++++|++.|.....+   +.++-.+....--|.   -+++..|+
T Consensus       202 tSeesHYSi~kaAa~lg~gtd~c~~v~t--~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GA---FDdL~~ia  276 (510)
T KOG0629|consen  202 TSEESHYSIKKAAAFLGLGTDHCIKVKT--DERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGA---FDDLNGIA  276 (510)
T ss_pred             ecccchhhHHHHHHHhccCCceeEEecc--cccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeec---cCcHHHHH
Confidence            33456667777888888   46777777  456789999999999764333   344433333333344   46677899


Q ss_pred             HHHHhcCCeeEEeccCCC
Q 012238          256 DVIQEKNHIPFFDVAYQG  273 (467)
Q Consensus       256 ~~~~~~~~~li~Deay~~  273 (467)
                      ++|++|++|+.+|.+|.+
T Consensus       277 diC~k~~lWmHvDAAwGG  294 (510)
T KOG0629|consen  277 DICEKHKLWMHVDAAWGG  294 (510)
T ss_pred             HHHHhcCEEEEeeccccc
Confidence            999999999999999877

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=97.41  E-value=0.0029  Score=57.80  Aligned_cols=181  Identities=15%  Similarity=0.091  Sum_probs=102.5

Q ss_pred             HhhCCCCeEEee-eecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC
Q 012238          194 FNDARVPWSEYR-YYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ  272 (467)
Q Consensus       194 ~~~~G~~~~~v~-~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~  272 (467)
                      +-.+|.+++.+. ..+.+...-|++.+++.+++..+.-.+.++++  ...=..-+++.+++|+.+|..|++.-|+..+|.
T Consensus       120 i~~agfepiiie~i~d~d~l~tdleav~~~iee~g~dcilci~st--tscfapr~pd~leaiaaica~~diphivnnayg  197 (432)
T KOG3843|consen  120 IIHAGFEPIIIENILDGDELITDLEAVEAIIEELGEDCILCIHST--TSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYG  197 (432)
T ss_pred             HHhcCCCceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEeec--ccccCCCCCchHHHHHHHHHccCchhhhccccc
Confidence            346799988874 44444445688999998887544433333221  111112246789999999999999999999976


Q ss_pred             CCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCC
Q 012238          273 GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNP  352 (467)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  352 (467)
                      --...    ....+....+.+.-.-++.|+-|+|-.|   +|..++..-...++..            +.+......+..
T Consensus       198 lqsee----~i~~iaa~~~~grida~vqsldknf~vp---vggaiia~fk~n~iq~------------iak~ypgrasa~  258 (432)
T KOG3843|consen  198 LQSEE----CIHKIAAAAECGRIDAFVQSLDKNFMVP---VGGAIIAAFKDNFIQE------------IAKMYPGRASAS  258 (432)
T ss_pred             cchHH----HHHHHHHHhhhccHHHHHHHhhhcceee---cchhHhhHhHHHHHHH------------HHHhCCCccccC
Confidence            43211    1111212222344456789999999866   5555422223334444            555544445566


Q ss_pred             chHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          353 PVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       353 ~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      |+....+....+....+.    +.+.+..+-+.+.|+.+....+ .+|
T Consensus       259 ps~dllitll~~gqn~f~----e~~~eqkemf~~l~~ki~~~ae-~~~  301 (432)
T KOG3843|consen  259 PSLDLLITLLSLGQNAFK----ELFGEQKEMFLKLRNKIIKFAE-AIG  301 (432)
T ss_pred             ccHHHHHHHHHhchhHHH----HHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence            666544444444444443    3344455555555555555444 443

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=97.28  E-value=0.013  Score=56.03  Aligned_cols=212  Identities=10%  Similarity=0.084  Sum_probs=110.2

Q ss_pred             ChhhHHHHHHcCC---CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH-
Q 012238          215 DFEGMIADIKAAP---GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF-  289 (467)
Q Consensus       215 d~~~l~~~l~~~~---~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~-  289 (467)
                      .++++++.|.+..   .....+++-.-+..-|- -.+++-.++|-+++++||+.+|+||+-.+-...+   +.|.-..+ 
T Consensus       254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTG---k~WaHehw~  330 (484)
T KOG1405|consen  254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATG---KFWAHEHWN  330 (484)
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccC---ceeeehhcC
Confidence            4556666665532   23344444444444443 3478889999999999999999999954443321   23322111 


Q ss_pred             HhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHH--HHHHHHHhCCh
Q 012238          290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHG--ARIVANVVGNP  367 (467)
Q Consensus       290 ~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~L~~~  367 (467)
                      ++...+   +-+|||-|- .|   ||.    -+++++-.          ...+..  ..|.+-|.-.  ...+...+++.
T Consensus       331 l~~PpD---~vTFSKK~q-~g---Gff----h~~~frpn----------~pYrif--NTWmGdP~k~lll~~vv~~I~~~  387 (484)
T KOG1405|consen  331 LDSPPD---VVTFSKKFQ-TG---GFF----HDEEFRPN----------EPYRIF--NTWMGDPSKNLLLEEVVQEIKRE  387 (484)
T ss_pred             CCCCcc---ceehhhhhh-cC---ccc----cCcccCCC----------chHHHh--hhhcCChHHHHHHHHHHHHHhHH
Confidence            011123   236788885 44   555    44444332          001111  1233333211  11111122211


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCcccccCCcceEEecCC-CH---HHHHHHHHcccEEEeCCC-
Q 012238          368 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL-NK---AQSDNMTNKWHVYMTKDG-  440 (467)
Q Consensus       368 ~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~--g~~~~~~~~~~~~g~f~~~~l-~~---~~~~~ll~~~gI~v~~gg-  440 (467)
                                 ...++.+..-+.|...|. ++  ..|+.+.-....|.|..| +. +.   +.+-..++-+||.+..|| 
T Consensus       388 -----------~Ll~n~~~vG~~l~~gL~-~Lq~~~p~~~~~~RGrGTF~a~-d~ps~~~Rdk~i~~~~~nGv~~GGCg~  454 (484)
T KOG1405|consen  388 -----------DLLNNVAHVGKALLKGLL-ELQAKYPGKINNLRGRGTFIAW-DCPSGSIRDKLILIARLNGVNLGGCGD  454 (484)
T ss_pred             -----------HHHHHHHHHHHHHHHHHH-HHHHhCchhhhcccccceEEEE-eCCChHHHHHHHHHHHHcCceeccccc
Confidence                       233334444555555554 33  234545555566554444 33 22   223334445699998887 


Q ss_pred             ---eEE--eccCChhhHHHHHHHHHHHHHhc
Q 012238          441 ---RIS--LAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 ---Ris--~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                         |+.  +.- .+...+-+++++.++++.+
T Consensus       455 ~siRfRPsLvf-~~~Ha~i~l~~~~k~l~~l  484 (484)
T KOG1405|consen  455 KSIRFRPSLVF-RKHHADIFLDIFDKILAGL  484 (484)
T ss_pred             ceeeeccceee-hhhhHHHHHHHHHHHhccC
Confidence               553  333 5677888999999988753

>PRK12566 glycine dehydrogenase; Provisional

Probab=97.00  E-value=0.44  Score=52.56  Aligned_cols=147  Identities=14%  Similarity=0.110  Sum_probs=84.6

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCc-----c----hHHHHHHHHHHHhCCCCcccccCceee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE-----G----LAAFNKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~-----G----~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      -..-++.|.|    +. ++|..+.+.+.+  +..+...|.|.+     |    +-++...++++. +   .++  .|--+
T Consensus        80 ~~~fiG~G~y----~~-~~P~vi~~~i~~--~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~Lt-G---m~v--aNASl  146 (954)
T PRK12566         80 WTSLIGMGYH----GT-VTPTVILRNVLE--NPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLT-G---LDL--ANASL  146 (954)
T ss_pred             cccccccccc----CC-cCcHHHHHHHHh--CchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHh-C---chh--hhhhh
Confidence            3456677777    32 336666454433  244456777743     3    456666777773 2   222  12222


Q ss_pred             eecCCchhHHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHHh----hCCCCeEEeeeecCCCCCCChhhHHHHHHcCCC
Q 012238          155 VQGLSGTGSLRLAAALIERYFP--GAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~~--gd~Vlv~~P~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~  228 (467)
                        -.++|.+-+.+.+.. ...+  ..+|+|+.-.++.+...++    ..|++++.             +++++.+.   .
T Consensus       147 --~D~atA~aEA~~ma~-~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-------------~~~~~~~~---~  207 (954)
T PRK12566        147 --LDEATAAAEAMALAK-RVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-------------DAVDNLAA---H  207 (954)
T ss_pred             --ccchhHHHHHHHHHH-HHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-------------cchhhcCC---C
Confidence              356666555442222 2222  4689999999998887665    44544443             22333332   3


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012238          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF  266 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li  266 (467)
                      .+..+++.+|+ -.|.+   +++++|+++++++|.++|
T Consensus       208 ~~~~v~vq~P~-~~G~i---~d~~~i~~~~h~~gal~~  241 (954)
T PRK12566        208 AVFGALLQYPD-THGEI---RDLRPLIDQLHGQQALAC  241 (954)
T ss_pred             CEEEEEEECCC-CceEE---ccHHHHHHHHHHcCCEEE
Confidence            56677776664 45776   457788889999998766

>PLN02672 methionine S-methyltransferase

Probab=96.52  E-value=0.061  Score=60.17  Aligned_cols=219  Identities=12%  Similarity=0.021  Sum_probs=134.5

Q ss_pred             HHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHH----HhCCCCEEEE
Q 012238          107 KKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE----RYFPGAKVLI  182 (467)
Q Consensus       107 ~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~----~~~~gd~Vlv  182 (467)
                      ...+...+..+...-|.|+.|...||..||.++..-++.++++++|++  .++-..|++.+.++.+    .+..+.+..+
T Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (1082)
T PLN02672        407 LAYLASALKGLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVV--FPSRAVAIENALRLFSPRLAIVDEHLTRWL  484 (1082)
T ss_pred             HHHHHHHHccCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEE--eccHHHHHHHHHHhhChHHHhhhhhhhccC
Confidence            344455555555577889999999999999999888899999999999  8999999987643322    1222222222


Q ss_pred             cCCCCcchHHHHhhCC--------CCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHH
Q 012238          183 SSPTWGNHKNIFNDAR--------VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKI  254 (467)
Q Consensus       183 ~~P~y~~~~~~~~~~G--------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l  254 (467)
                      | +.   |...+...|        ..+..+.-  +.    .-+.+.+.+++  -++.+++..-.+   +-..+...++.|
T Consensus       485 ~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~  549 (1082)
T PLN02672        485 P-KK---WLTSLAIENATSDSKSDDVITVIEA--PR----QSDLVIELIKK--LKPQVVVTGMAD---FEMRTSTAFEHL  549 (1082)
T ss_pred             C-HH---HHhHhhhhcccccCccCCeEEEEeC--CC----cchHHHHHHHh--CCCeEEEEeccc---hhhhhHHHHHHH
Confidence            1 12   222222222        12222211  11    12356666665  344566654444   455667789999


Q ss_pred             HHHHHhcCCeeEEecc-CCCCCCCCCCCChhHHHHHHh--cCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhh
Q 012238          255 ADVIQEKNHIPFFDVA-YQGFASGSLDNDASSVRLFAT--RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCE  331 (467)
Q Consensus       255 ~~~~~~~~~~li~Dea-y~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~  331 (467)
                      .+.+++-|..++.|.. |..+...  ......+..+..  ...+..++.++-|+--.+.+-+.+++  .-++.+...   
T Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---  622 (1082)
T PLN02672        550 LNVTAEIGARLFLDISDHLELSSL--PGSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFVI--SENEAVLKA---  622 (1082)
T ss_pred             HHHHHhhCcEEEEehhhheeeccC--CCcccHHHHhcCCCCCcchhHhhhhhhccccccceEEEEe--cCcHHHHHH---
Confidence            9999999999999987 2233322  122222333322  22477888999999888999999996  455555554   


Q ss_pred             hhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          332 VAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       332 ~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                               +.+.....+++...++|.
T Consensus       623 ---------~~~~~~~~~~~~~~~~~~  640 (1082)
T PLN02672        623 ---------LSKTGEVLEGRTAIISQF  640 (1082)
T ss_pred             ---------HHHHHHhhccchHHHHHH
Confidence                     544444445555555544

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=94.91  E-value=1.4  Score=41.29  Aligned_cols=322  Identities=18%  Similarity=0.173  Sum_probs=152.2

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--------CCcCCCC-cchHHHHHHHHHHHhCCCCcccccCcee
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--------NKEYLPI-EGLAAFNKVTAELLFGADNSVLKEQRVA  153 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--------~~~Y~~~-~G~~~lr~aia~~l~~~~~~~~~~~~i~  153 (467)
                      .+++||+.|--    ..|  .+.++++-.+.++-+.        +++-... .-+.+....+.++|.-.+     .-.|+
T Consensus         6 ~~vvnFaaGPA----klp--~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPd-----n~~vl   74 (370)
T KOG2790|consen    6 ERVVNFAAGPA----KLP--ESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPD-----NYKVL   74 (370)
T ss_pred             cceeecCCCcc----cCC--HHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCC-----ceeEE
Confidence            47899998843    222  4555665555553210        0110011 113444455666654422     22566


Q ss_pred             eeecCCchhHHHHHHHHHHHh--CCC---CEEEEcCCCCcchHHHHhhCCCC-eEEeeeecCCC--CCCChhhHHHHHHc
Q 012238          154 TVQGLSGTGSLRLAAALIERY--FPG---AKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPKT--VGLDFEGMIADIKA  225 (467)
Q Consensus       154 ~~~t~ggt~al~l~~~~l~~~--~~g---d~Vlv~~P~y~~~~~~~~~~G~~-~~~v~~~~~~~--~~~d~~~l~~~l~~  225 (467)
                      ++|.. ||+-+..+  .+.++  ..|   |-|+.-+-+--.+.++- .+|.. .+..+.. +-.  .-+|.+.++..   
T Consensus        75 f~QGG-Gt~qFaAv--~lNL~glK~g~~AdYiVTGsWS~KA~~EAk-k~~~~~~V~~~~k-~y~ygkvPd~~~w~~~---  146 (370)
T KOG2790|consen   75 FLQGG-GTGQFAAV--PLNLIGLKHGRCADYVVTGSWSAKAAEEAK-KYGTPNIVIPKLK-SYTYGKVPDPSTWELN---  146 (370)
T ss_pred             EEeCC-Cccccccc--chhhhccccCCccceEEeccccHHHHHHHH-hhCCceEEecccc-ccccCcCCChhhcccC---
Confidence            66554 44444443  23333  334   45554333333444443 34433 3333332 222  23565555332   


Q ss_pred             CCCCcEEEEeCCCCCCC--CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCc
Q 012238          226 APGGSFILLHGCAHNPT--GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (467)
Q Consensus       226 ~~~~~~~i~i~~p~NPT--G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S  303 (467)
                        ++...+..|  .|.|  |+-++     .+- +-.-+|.++|.|.. +.|.....  |..         ...++..+.-
T Consensus       147 --~da~yvyyC--aNETVHGVEf~-----~~P-~~~~~~~vlVaDmS-SnflSrpv--Dvs---------k~gvi~aGAQ  204 (370)
T KOG2790|consen  147 --PDASYVYYC--ANETVHGVEFD-----FIP-VNDPKGAVLVADMS-SNFLSRPV--DVS---------KFGVIFAGAQ  204 (370)
T ss_pred             --CCccEEEEe--cCceeeceecC-----CCC-CCCCCCceEEEecc-cchhcCCc--cch---------hcceEEeccc
Confidence              233344444  5655  55332     221 11236788888887 55654322  211         2346677889


Q ss_pred             cCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh--ccCccCCCchHHHH----HHHHHhCChhhHHHHHHHH
Q 012238          304 KNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL--ARPMYSNPPVHGAR----IVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       304 K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~----~~~~~L~~~~~~~~~~~~l  377 (467)
                      |++|++|+.+-.     -.++++...... .+-+.+ .+..  ....+..+|..+..    ....+++++.        +
T Consensus       205 KN~G~aG~Tvvi-----vr~dllg~~~~~-tP~v~d-yk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GG--------l  269 (370)
T KOG2790|consen  205 KNVGPAGVTVVI-----VRKDLLGNALDI-TPSVLD-YKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGG--------L  269 (370)
T ss_pred             cccCccccEEEE-----EehhhhcccccC-Cccccc-eeeeccccccccCCCeeeeeehhhHHHHHHhccc--------H
Confidence            999998863322     234444430000 000000 1111  11123334433322    2333444443        3


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcc-CCCCCcccc-cC--CcceEEec-----CCCHHHHHHHHHcccEEEeCC-----C-eE
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFI-LR--QIGMFSFT-----GLNKAQSDNMTNKWHVYMTKD-----G-RI  442 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~-g~~~~~~~~-~~--~~g~f~~~-----~l~~~~~~~ll~~~gI~v~~g-----g-Ri  442 (467)
                      ..+.+.-.++.+.+++.+. .. |+   +.+. .|  ..-|-+..     .+..+|+.+..++ +..-..|     | |-
T Consensus       270 ~a~e~~n~~KskllYd~iD-~s~gf---y~cpVe~~~RS~MNV~Fri~~d~Le~eFLkeA~~~-~mv~LKGhRSVGGiRA  344 (370)
T KOG2790|consen  270 AAMEKLNQEKSKLLYDAID-NSNGF---YRCPVEPSVRSRMNVPFRIEKDELEAEFLKEAAKE-HMVQLKGHRSVGGIRA  344 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHH-hcCCe---EEcccchhhhhhcccceeecchHHHHHHHHHHHHh-hhhccccccccccchh
Confidence            4555566677888999987 43 32   1110 11  11111111     1345667666665 5555555     3 88


Q ss_pred             Eecc-CChhhHHHHHHHHHHHHHh
Q 012238          443 SLAG-LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       443 s~~~-~~~~~i~~~~~~l~~~l~~  465 (467)
                      |+.. ++-++.+.++.-+++..+.
T Consensus       345 SlYNAisv~~~q~L~~~m~~F~k~  368 (370)
T KOG2790|consen  345 SLYNAISVEEVQKLAAFMKEFQKK  368 (370)
T ss_pred             hhhccccHHHHHHHHHHHHHHHHh
Confidence            8654 4778888888888877654

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=94.89  E-value=0.33  Score=50.26  Aligned_cols=142  Identities=16%  Similarity=0.135  Sum_probs=94.1

Q ss_pred             CcCCC---CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh--CCC----CEEEEcCCCCcch
Q 012238          120 KEYLP---IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--FPG----AKVLISSPTWGNH  190 (467)
Q Consensus       120 ~~Y~~---~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~--~~g----d~Vlv~~P~y~~~  190 (467)
                      +-|.|   .+|+.++-+.+-++|-...|.    +++.+ |.++|.++-+.-.+.+...  .+|    ...+||.-.+...
T Consensus       569 HPF~P~eQaqGY~~lf~~Le~~Lc~iTG~----D~~s~-QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTN  643 (1001)
T KOG2040|consen  569 HPFAPVEQAQGYQQLFTELEKDLCEITGF----DSFSL-QPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTN  643 (1001)
T ss_pred             CCCCchHHHhhHHHHHHHHHHHhheeecc----cceee-cCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCC
Confidence            45655   356666666666665443332    34444 3455544444432223222  133    3577887778777


Q ss_pred             HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012238          191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA  270 (467)
Q Consensus       191 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Dea  270 (467)
                      ...+..+|.+++++.+  ..++.+|..+|++..+++.+.-..+.++.|.   -.-.=.+.+.+++++..+||--+..|.+
T Consensus       644 PASA~MagmkvvpV~~--~~~G~id~~dLk~kaekh~~~Laa~MvTYPS---T~GvfE~~i~d~cd~iHehGGQVYlDGA  718 (1001)
T KOG2040|consen  644 PASAAMAGMKVVPVGC--DANGNIDMVDLKAKAEKHKDNLAALMVTYPS---THGVFEEGIDDICDIIHEHGGQVYLDGA  718 (1001)
T ss_pred             hhhHHhcCCEEEEeec--cCCCCccHHHHHHHHHHhhhhhheeEEeccc---ccccccccHHHHHHHHHhcCCEEEecCC
Confidence            7788899999999988  4567899999999988765666666666654   2223355689999999999999999988


Q ss_pred             C
Q 012238          271 Y  271 (467)
Q Consensus       271 y  271 (467)
                      -
T Consensus       719 N  719 (1001)
T KOG2040|consen  719 N  719 (1001)
T ss_pred             C
Confidence            3

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=88.61  E-value=19  Score=32.78  Aligned_cols=93  Identities=24%  Similarity=0.355  Sum_probs=59.7

Q ss_pred             cCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCC-cchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC
Q 012238          149 EQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTW-GNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP  227 (467)
Q Consensus       149 ~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y-~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~  227 (467)
                      ...+++  ..||..|..-+   -..+..|.+|.+.+|.. +......+..+..++.        ..++.+.+        
T Consensus        12 ~k~Vlv--vGgG~va~rKa---~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~--------~~~~~~~~--------   70 (210)
T COG1648          12 GKKVLV--VGGGSVALRKA---RLLLKAGADVTVVSPEFEPELKALIEEGKIKWIE--------REFDAEDL--------   70 (210)
T ss_pred             CCEEEE--ECCCHHHHHHH---HHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhh--------cccChhhh--------
Confidence            456777  79999998876   33466799999999999 4444455544422222        12344443        


Q ss_pred             CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE-Eecc
Q 012238          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF-FDVA  270 (467)
Q Consensus       228 ~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li-~Dea  270 (467)
                      ....+++.++.+        .+.=+++.+.|+++++++- +|+.
T Consensus        71 ~~~~lviaAt~d--------~~ln~~i~~~a~~~~i~vNv~D~p  106 (210)
T COG1648          71 DDAFLVIAATDD--------EELNERIAKAARERRILVNVVDDP  106 (210)
T ss_pred             cCceEEEEeCCC--------HHHHHHHHHHHHHhCCceeccCCc
Confidence            224566666554        5677899999999986653 4544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	467
3pd6_A	401	Crystal Structure Of Mouse Mitochondrial Aspartate		1e-119
3hlm_A	401	Crystal Structure Of Mouse Mitochondrial Aspartate		1e-118
7aat_A	401	X-Ray Structure Refinement And Comparison Of Three		1e-117
1aka_A	401	Structural Basis For The Catalytic Activity Of Aspa		1e-117
2cst_A	411	Crystal Structure Of The Closed Form Of Chicken Cyt		1e-101
1aat_A	411	Oxoglutarate-Induced Conformational Changes In Cyto		1e-100
1ajs_A	412	Refinement And Comparison Of The Crystal Structures		1e-100
3ii0_A	422	Crystal Structure Of Human Glutamate Oxaloacetate T		1e-100
1ajr_A	412	Refinement And Comparison Of The Crystal Structures		1e-100
1asl_A	396	Crystal Structures Of Escherichia Coli Aspartate Am		2e-94
4eu1_A	409	Structure Of A Mitochondrial Aspartate Aminotransfe		2e-94
4f5m_A	406	Wild-type E. Coli Aspartate Aminotransferase: A Tem		3e-94
1ix6_A	396	Aspartate Aminotransferase Active Site Mutant V39f		3e-94
1asf_A	396	The Structural Basis For The Reduced Activity Of Th		5e-94
1aia_A	396	Structural Basis For The Catalytic Activity Of Aspa		7e-94
2q7w_A	396	Structural Studies Reveals The Inactivation Of E. C		8e-94
2aat_A	396	2.8-Angstroms-Resolution Crystal Structure Of An Ac		8e-94
1asb_A	396	The Structural Basis For The Reduced Activity Of Th		1e-93
1aam_A	396	The Structural Basis For The Altered Substrate Spec		1e-93
3aat_A	396	Activity And Structure Of The Active-Site Mutants R		2e-93
1ix8_A	396	Aspartate Aminotransferase Active Site Mutant V39fN		2e-93
1b4x_A	396	Aspartate Aminotransferase From E. Coli, C191s Muta		3e-93
1g4v_A	396	Aspartate Aminotransferase Active Site Mutant N194a		4e-93
1qir_A	396	Aspartate Aminotransferase From Escherichia Coli, C		4e-93
1ari_A	396	Aspartate Aminotransferase, W140h Mutant, Maleate C		5e-93
1qis_A	396	Aspartate Aminotransferase From Escherichia Coli, C		5e-93
1qit_A	396	Aspartate Aminotransferase From Escherichia Coli, C		6e-93
1bqa_A	396	Aspartate Aminotransferase P195a Mutant Length = 39		7e-93
1g7w_A	396	Aspartate Aminotransferase Active Site Mutant N194a		1e-92
1g4x_A	396	Aspartate Aminotransferase Active Site Mutant N194a		1e-92
1arh_A	396	Aspartate Aminotransferase, Y225rR386A MUTANT Lengt		1e-92
1ahy_A	396	Aspartate Aminotransferase Hexamutant Length = 396		3e-92
3zzj_A	396	Structure Of An Engineered Aspartate Aminotransfera		5e-92
2d61_A	396	Aspartate Aminotransferase Mutant Ma With Maleic Ac		6e-92
1bqd_A	396	Aspartate Aminotransferase P138aP195A DOUBLE MUTANT		6e-92
2d5y_A	396	Aspartate Aminotransferase Mutant Mc With Isovaleri		6e-92
1g7x_A	396	Aspartate Aminotransferase Active Site Mutant N194a		1e-91
4f5f_A	406	Structure Of Aspartate Aminotransferase Conversion		2e-91
1toe_A	396	Unliganded Structure Of Hexamutant + A293d Mutant O		2e-91
2d66_A	396	Aspartate Aminotransferase Mutant Mab Length = 396		6e-91
4f5j_A	406	Rational Design And Directed Evolution For Conversi		2e-90
1czc_A	396	Aspartate Aminotransferase Mutant Atb17139S142N WIT		3e-90
4f5i_A	406	Substrate Specificity Conversion Of E. Coli Pyridox		3e-90
4f5h_A	406	Intercoversion Of Substrate Specificity: E. Coli As		4e-90
4f5g_A	406	Rational Design And Directed Evolution Of E. Coli A		7e-90
4f5k_A	406	Substrate Specificity Conversion Of Aspartate Amino		1e-89
4h51_A	420	Crystal Structure Of A Putative Aspartate Aminotran		1e-89
1toj_A	396	Hydrocinnamic Acid-Bound Structure Of Srhept Mutant		1e-89
1tog_A	396	Hydrocinnamic Acid-Bound Structure Of Srhept + A293		2e-89
1yoo_A	396	Aspartate Aminotransferase Mutant Atb17 With Isoval		3e-89
2d64_A	396	Aspartate Aminotransferase Mutant Mabc With Isovale		5e-89
1yaa_A	412	Aspartate Aminotransferase From Saccharomyces Cerev		4e-88
3meb_A	448	Structure Of Cytoplasmic Aspartate Aminotransferase		5e-87
4f4e_A	420	Crystal Structure Of Aromatic-Amino-Acid Aminotrans		1e-83
4eff_A	420	Crystal Structure Of Aromatic-Amino-Acid Aminotrans		1e-83
3tat_A	397	Tyrosine Aminotransferase From E. Coli Length = 397		2e-83
3fsl_A	397	Crystal Structure Of Tyrosine Aminotransferase Trip		7e-83
3uak_A	406	Crystal Structure Of De Novo Designed Cysteine Este		5e-77
1ay4_A	394	Aromatic Amino Acid Aminotransferase Without Substr		4e-75
3k7y_A	405	Aspartate Aminotransferase Of Plasmodium Falciparum		7e-54
3rq1_A	418	Crystal Structure Of Aminotransferase Class I And I		1e-15
4emy_A	413	Crystal Structure Of Aminotransferase From Anaeroco		1e-04

>pdb|3PD6|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate Aminotransferase, A Newly Identified Kynurenine Aminotransferase-Iv Length = 401

Iteration: 1
 Score =  425 bits (1093), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/399 (52%), Positives = 274/399 (68%), Gaps = 10/399 (2%)
Query: 62  VTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE 121
           V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  V+KAE  +  +  +KE
Sbjct: 7   VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKE 66
Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK-V 180
           YLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR+ A+ ++R+F  ++ V
Sbjct: 67  YLPIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALRVGASFLQRFFKFSRDV 126
Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
            +  P+WGNH  IF DA +    YRYYDPKT G DF G + DI   P  S +LLH CAHN
Sbjct: 127 FLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHACAHN 186
Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTG+DP PEQW++IA V+++KN   FFD+AYQGFASG  D DA +VR F  +G+ + + Q
Sbjct: 187 PTGVDPRPEQWKEIASVVKKKNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQ 246
Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV 360
           SY+KN+GLY ER+GA  VVC  ++ A R        V+SQLK L RP+YSNPP++GARI 
Sbjct: 247 SYAKNMGLYGERVGAFTVVCKDAEEAKR--------VESQLKILIRPLYSNPPLNGARIA 298
Query: 361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL 420
           A ++ +P L  +W  E++ MA RI ++R +L  +L  K+ S  +W  I  QIGMF FTGL
Sbjct: 299 ATILTSPDLRKQWLQEVKGMADRIISMRTQLVSNLK-KEGSSHNWQHITDQIGMFCFTGL 357
Query: 421 NKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
              Q + +T ++ VYMTKDGRIS+AG++     YLA AI
Sbjct: 358 KPEQVERLTKEFSVYMTKDGRISVAGVTSGNVGYLAHAI 396

>pdb|3HLM|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate AminotransferaseKYNURENINE AMINOTRANSFERASE IV Length = 401

Iteration: 1
 Score =  423 bits (1087), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/399 (52%), Positives = 273/399 (68%), Gaps = 10/399 (2%)
Query: 62  VTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE 121
           V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  V+KAE  +  +  +KE
Sbjct: 7   VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKE 66
Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK-V 180
           YLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR+ A+ ++R+F  ++ V
Sbjct: 67  YLPIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALRVGASFLQRFFKFSRDV 126
Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
            +  P+WGNH  IF DA +    YRYYDPKT G DF G + DI   P  S +LLH CAHN
Sbjct: 127 FLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHACAHN 186
Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTG+DP PEQW++IA V+++KN   FFD+AYQGFASG  D DA +VR F  +G+ + + Q
Sbjct: 187 PTGVDPRPEQWKEIASVVKKKNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQ 246
Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV 360
           SY+ N+GLY ER+GA  VVC  ++ A R        V+SQLK L RP+YSNPP++GARI 
Sbjct: 247 SYAXNMGLYGERVGAFTVVCKDAEEAKR--------VESQLKILIRPLYSNPPLNGARIA 298
Query: 361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL 420
           A ++ +P L  +W  E++ MA RI ++R +L  +L  K+ S  +W  I  QIGMF FTGL
Sbjct: 299 ATILTSPDLRKQWLQEVKGMADRIISMRTQLVSNLK-KEGSSHNWQHITDQIGMFCFTGL 357
Query: 421 NKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
              Q + +T ++ VYMTKDGRIS+AG++     YLA AI
Sbjct: 358 KPEQVERLTKEFSVYMTKDGRISVAGVTSGNVGYLAHAI 396

>pdb|7AAT|A Chain A, X-Ray Structure Refinement And Comparison Of Three Forms Of Mitochondrial Aspartate Aminotransferase Length = 401

Iteration: 1
 Score =  419 bits (1077), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/404 (50%), Positives = 279/404 (69%), Gaps = 10/404 (2%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL+ V+KAE ++  +
Sbjct: 2   SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK 61
Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176
             +KEYLPI GLA F + +AEL  G ++   K  R  TVQG+SGTGSLR+ A  ++R+F 
Sbjct: 62  KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFK 121
Query: 177 GAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
            ++ V +  P+WGNH  IF DA +    YRYYDPKT  LDF G + DI   P  S ILLH
Sbjct: 122 FSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLH 181
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DP  EQW+++A V++++N + +FD+AYQGFASG ++ DA ++R F  +G++
Sbjct: 182 ACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
           ++++QSY+KN+GLY ER GA  V+C  ++ A R        V+SQLK L RPMYSNPP++
Sbjct: 242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKR--------VESQLKILIRPMYSNPPMN 293
Query: 356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
           GARI + ++  P L  EW  E++ MA RI ++R +L  +L  K+ S  +W  I  QIGMF
Sbjct: 294 GARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLK-KEGSSHNWQHITDQIGMF 352
Query: 416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
            FTGL   Q + +T ++ +YMTKDGRIS+AG++ +   YLA AI
Sbjct: 353 CFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAI 396

>pdb|1AKA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate Aminotransferase K258h Lacking Its Pyridoxal-5'-Phosphate-Binding Lysine Residue Length = 401

Iteration: 1
 Score =  417 bits (1071), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/404 (49%), Positives = 278/404 (68%), Gaps = 10/404 (2%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL+ V+KAE ++  +
Sbjct: 2   SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK 61
Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176
             +KEYLPI GLA F + +AEL  G ++   K  R  TVQG+SGTGSLR+ A  ++R+F 
Sbjct: 62  KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFK 121
Query: 177 GAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
            ++ V +  P+WGNH  IF DA +    YRYYDPKT  LDF G + DI   P  S ILLH
Sbjct: 122 FSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLH 181
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DP  EQW+++A V++++N + +FD+AYQGFASG ++ DA ++R F  +G++
Sbjct: 182 ACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
           ++++QSY+ N+GLY ER GA  V+C  ++ A R        V+SQLK L RPMYSNPP++
Sbjct: 242 VVLSQSYAHNMGLYGERAGAFTVICRDAEEAKR--------VESQLKILIRPMYSNPPMN 293
Query: 356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
           GARI + ++  P L  EW  E++ MA RI ++R +L  +L  K+ S  +W  I  QIGMF
Sbjct: 294 GARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLK-KEGSSHNWQHITDQIGMF 352
Query: 416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
            FTGL   Q + +T ++ +YMTKDGRIS+AG++ +   YLA AI
Sbjct: 353 CFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAI 396

>pdb|2CST|A Chain A, Crystal Structure Of The Closed Form Of Chicken Cytosolic Aspartate Aminotransferase At 1.9 Angstroms Resolution Length = 411

Iteration: 1
 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/410 (45%), Positives = 255/410 (62%), Gaps = 16/410 (3%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F  V  APP  +  ++  F+ D D +K+NLGVGAYRT+E QP+VL VV+K E L+   
Sbjct: 3   SIFAAVPRAPPVAVFKLTADFREDGDSRKVNLGVGAYRTDEGQPWVLPVVRKVEQLIAGD 62
Query: 117 GE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
           G  N EYLPI GL  F    + +  G D+  + ++RV +VQGL GTG+LR+ A  + R++
Sbjct: 63  GSLNHEYLPILGLPEFRANASRIALGDDSPAIAQKRVGSVQGLGGTGALRIGAEFLRRWY 122
Query: 176 PG-----AKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
            G       V +SSPTW NH ++F DA       YRY+D    GLD +G++ D++ AP  
Sbjct: 123 NGNNNTATPVYVSSPTWENHNSVFMDAGFKDIRTYRYWDAAKRGLDLQGLLDDMEKAPEF 182
Query: 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289
           S  +LH CAHNPTG DPTP++W++IA V++ +   PFFD AYQGFASGSLD DA +VR F
Sbjct: 183 SIFILHACAHNPTGTDPTPDEWKQIAAVMKRRCLFPFFDSAYQGFASGSLDKDAWAVRYF 242
Query: 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMY 349
            + G EL  AQS+SKN GLY ER+G ++VV    D   R        V SQ++++ R  +
Sbjct: 243 VSEGFELFCAQSFSKNFGLYNERVGNLSVVGKDEDNVQR--------VLSQMEKIVRTTW 294
Query: 350 SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL 409
           SNPP  GARIVA  + +P LF EWK  ++ MA R+  +R +L   L +    G  W+ I 
Sbjct: 295 SNPPSQGARIVATTLTSPQLFAEWKDNVKTMADRVLLMRSELRSRLESLGTPGT-WNHIT 353
Query: 410 RQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
            QIGMFSFTGLN  Q + M  + H+Y+   GRI++ GL+    +Y+A +I
Sbjct: 354 DQIGMFSFTGLNPKQVEYMIKEKHIYLMASGRINMCGLTTKNLDYVAKSI 403

>pdb|1AAT|A Chain A, Oxoglutarate-Induced Conformational Changes In Cytosolic Aspartate Aminotransferase Length = 411

Iteration: 1
 Score =  363 bits (932), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/410 (44%), Positives = 256/410 (62%), Gaps = 16/410 (3%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F  V  APP  +  ++  F+ D D +K+NLGVGAYRT+E QP+VL VV+K E L+   
Sbjct: 3   SIFAAVPRAPPVAVFKLTADFREDGDSRKVNLGVGAYRTDEGQPWVLPVVRKVEQLIAGN 62
Query: 117 GE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
           G  N EYLPI GL  F    + +  G D+  + ++RV +VQGL GTG+LR+ A  + R++
Sbjct: 63  GSLNHEYLPILGLPEFRANASRIALGDDSPAIAQKRVGSVQGLGGTGALRIGAEFLRRWY 122
Query: 176 PG-----AKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
            G       V +SSPTW NH ++F DA       YRY+D    GLD +G+++D++ AP  
Sbjct: 123 NGNNNTATPVYVSSPTWENHNSVFMDAGFKDIRTYRYWDAAKRGLDLQGLLSDMEKAPEF 182
Query: 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289
           S  +LH CAHNPTG DPTP++W++IA V++ +   PFFD AYQGFASG+L+ DA +VR F
Sbjct: 183 SIFILHACAHNPTGTDPTPDEWKQIAAVMKRRCLFPFFDSAYQGFASGNLEKDAWAVRYF 242
Query: 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMY 349
            + G EL  AQS+SKN GLY ER+G ++VV    D   R        V SQ++++ R  +
Sbjct: 243 VSEGFELFCAQSFSKNFGLYNERVGNLSVVGKDEDNVQR--------VLSQMEKIVRTTW 294
Query: 350 SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL 409
           SNPP  GARIVA  + +P LF EWK  ++ MA R+  +R +L   L +    G  W+ I 
Sbjct: 295 SNPPSQGARIVATTLTSPQLFAEWKDNVKTMADRVLLMRSELRSRLESLGTPGT-WNHIT 353
Query: 410 RQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
            QIGMFSFTGLN  Q + M  + H+Y+   GRI++ GL+    +Y+A +I
Sbjct: 354 DQIGMFSFTGLNPKQVEYMIKEKHIYLMASGRINMCGLTTKNLDYVAKSI 403

>pdb|1AJS|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig Cytosolic Aspartate Aminotransferase And Its Complex With 2-Methylaspartate Length = 412

Iteration: 1
 Score =  363 bits (932), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/410 (44%), Positives = 253/410 (61%), Gaps = 16/410 (3%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F  V  A P  +  +   F+ D D +K+NLGVGAYRT++ QP+VL VV+K E  +   
Sbjct: 4   SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN 63
Query: 117 GE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              N EYLPI GLA F    + L  G D+  L+E+RV  VQ L GTG+LR+ A  + R++
Sbjct: 64  SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 123
Query: 176 PGAK-----VLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
            G       V +SSPTW NH  +F  A       YRY+D +  GLD +G ++D++ AP  
Sbjct: 124 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 183
Query: 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289
           S  +LH CAHNPTG DPTPEQW++IA V++ +   PFFD AYQGFASG+L+ DA ++R F
Sbjct: 184 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243
Query: 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMY 349
            + G EL  AQS+SKN GLY ER+G + VV    D        ++++V SQ++++ R  +
Sbjct: 244 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPD--------SILRVLSQMQKIVRVTW 295
Query: 350 SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL 409
           SNPP  GARIVA  + +P LF EW   ++ MA RI ++R +L   L A    G  W+ I 
Sbjct: 296 SNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGT-WNHIT 354
Query: 410 RQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
            QIGMFSFTGLN  Q + + N+ H+Y+   GRI++ GL+    +Y+A +I
Sbjct: 355 DQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSI 404

>pdb|3II0|A Chain A, Crystal Structure Of Human Glutamate Oxaloacetate Transaminase 1 (Got1) Length = 422

Iteration: 1
 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/400 (45%), Positives = 253/400 (63%), Gaps = 16/400 (4%)
Query: 67  PDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAEN-LMLERGENKEYLPI 125
           P  +  ++  F+ D D +K+NLGVGAYRT++  P+VL VVKK E  +  +   N EYLPI
Sbjct: 3   PVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPI 62
Query: 126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK-----V 180
            GLA F    + L  G D+  LKE+RV  VQ L GTG+LR+ A  + R++ G       V
Sbjct: 63  LGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPV 122
Query: 181 LISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239
            +SSPTW NH  +F+ A       YRY+D +  GLD +G + D++ AP  S ++LH CAH
Sbjct: 123 YVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAH 182
Query: 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA 299
           NPTGIDPTPEQW++IA V++ +   PFFD AYQGFASG+L+ DA ++R F + G E   A
Sbjct: 183 NPTGIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWAIRYFVSEGFEFFCA 242
Query: 300 QSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARI 359
           QS+SKN GLY ER+G + VV    +        +++QV SQ++++ R  +SNPP  GARI
Sbjct: 243 QSFSKNFGLYNERVGNLTVVGKEPE--------SILQVLSQMEKIVRITWSNPPAQGARI 294
Query: 360 VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTG 419
           VA+ + NP LF+EW   ++ MA RI  +R +L   L A    G  W+ I  QIGMFSFTG
Sbjct: 295 VASTLSNPELFEEWTGNVKTMADRILTMRSELRARLEALKTPGT-WNHITDQIGMFSFTG 353
Query: 420 LNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
           LN  Q + + N+ H+Y+   GRI+++GL+    +Y+A +I
Sbjct: 354 LNPKQVEYLVNEKHIYLLPSGRINVSGLTTKNLDYVATSI 393

>pdb|1AJR|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig Cytosolic Aspartate Aminotransferase And Its Complex With 2-Methylaspartate Length = 412

Iteration: 1
 Score =  361 bits (926), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/410 (44%), Positives = 252/410 (61%), Gaps = 16/410 (3%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F  V  A P  +  +   F+ D D +K+NLGVGAYRT++ QP+VL VV+K E  +   
Sbjct: 4   SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN 63
Query: 117 GE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              N EYLPI GLA F    + L  G D+  L+E+RV  VQ L GTG+LR+ A  + R++
Sbjct: 64  SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 123
Query: 176 PGAK-----VLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
            G       V +SSPTW NH  +F  A       YRY+D +  GLD +G ++D++ AP  
Sbjct: 124 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 183
Query: 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289
           S  +LH CAHNPTG DPTPEQW++IA V++ +   PFFD AYQGFASG+L+ DA ++R F
Sbjct: 184 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243
Query: 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMY 349
            + G EL  AQS+S N GLY ER+G + VV    D        ++++V SQ++++ R  +
Sbjct: 244 VSEGFELFCAQSFSXNFGLYNERVGNLTVVAKEPD--------SILRVLSQMQKIVRVTW 295
Query: 350 SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL 409
           SNPP  GARIVA  + +P LF EW   ++ MA RI ++R +L   L A    G  W+ I 
Sbjct: 296 SNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGT-WNHIT 354
Query: 410 RQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
            QIGMFSFTGLN  Q + + N+ H+Y+   GRI++ GL+    +Y+A +I
Sbjct: 355 DQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSI 404

>pdb|1ASL|A Chain A, Crystal Structures Of Escherichia Coli Aspartate Aminotransferase In Two Conformations: Comparison Of An Unliganded Open And Two Liganded Closed Forms Length = 396

Iteration: 1
 Score =  342 bits (878), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 175/402 (43%), Positives = 247/402 (61%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|4EU1|A Chain A, Structure Of A Mitochondrial Aspartate Aminotransferase From Trypanosoma Brucei Length = 409

Iteration: 1
 Score =  342 bits (877), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 172/407 (42%), Positives = 256/407 (62%), Gaps = 21/407 (5%)
Query: 63  TMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY 122
           +M  PDPILG+ + F+ D  ++K+NL +G YR +  QP+VL+ VK+A       G N +Y
Sbjct: 21  SMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQAT-----LGTNMDY 75
Query: 123 LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI 182
            P+ G+A+F +   +L FG   + L++ R+A+ Q L GTG+LR+   L+ R+       I
Sbjct: 76  APVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCN-RI 134
Query: 183 SSPTWG--NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
             P  G  NH++IF  A +  + Y YYDP T GL+  GM+  +  AP GS IL+H CAHN
Sbjct: 135 YGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHN 194
Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTG+DPT + W ++ DVI+ +NHIPF D+AYQGFA+G LD DA   R        L+VAQ
Sbjct: 195 PTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQ 254
Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV 360
           S+S N GLY  R GA+++  +S++ A R        + SQL  L RPMY+NPP++GA +V
Sbjct: 255 SFSXNFGLYGHRCGALHISTASAEEAKR--------LVSQLALLIRPMYNNPPLYGAWVV 306
Query: 361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL 420
           ++++ +P L   WK E++ M+ RI  VR++L   L A   S  DWS I RQ+GM ++TGL
Sbjct: 307 SSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACG-SVHDWSHIERQVGMMAYTGL 365
Query: 421 NKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 467
            + Q + + +++H+YMT +GR +++GL+    EY++ AI    HNV+
Sbjct: 366 TREQVELLRSEYHIYMTLNGRAAVSGLNSTNVEYVSQAI----HNVT 408

>pdb|4F5M|A Chain A, Wild-type E. Coli Aspartate Aminotransferase: A Template For The Interconversion Of Substrate Specificity And Activity To Tyrosine Aminotransferase By The Janus Algorithm. Length = 406

Iteration: 1
 Score =  342 bits (876), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 175/405 (43%), Positives = 247/405 (60%), Gaps = 10/405 (2%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +  
Sbjct: 69  NETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
           L+VA SYS N GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP H
Sbjct: 248 LIVASSYSXNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAH 299
Query: 356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
           GA +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMF
Sbjct: 300 GASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMF 358
Query: 416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           SF+GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 359 SFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 403

>pdb|1IX6|A Chain A, Aspartate Aminotransferase Active Site Mutant V39f Length = 396

Iteration: 1
 Score =  342 bits (876), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 175/402 (43%), Positives = 247/402 (61%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGFYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1ASF|A Chain A, The Structural Basis For The Reduced Activity Of The Y226f(Y225f) Active Site Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  341 bits (875), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 174/402 (43%), Positives = 247/402 (61%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD A+QGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAFQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1AIA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate Aminotransferase K258h Lacking The Pyridoxal-5'-Phosphate Binding Lysine Residue Length = 396

Iteration: 1
 Score =  340 bits (873), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 174/402 (43%), Positives = 246/402 (61%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYS N GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSHNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|2Q7W|A Chain A, Structural Studies Reveals The Inactivation Of E. Coli L-Aspartate Aminotransferase (S)-4,5-Amino-Dihydro-2-Thiophenecarboxylic Acid (Sadta) Via Two Mechanisms At Ph 6.0 Length = 396

Iteration: 1
 Score =  340 bits (873), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 174/402 (43%), Positives = 246/402 (61%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYS N GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSXNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|2AAT|A Chain A, 2.8-Angstroms-Resolution Crystal Structure Of An Active-Site Mutant Of Aspartate Aminotransferase From Escherichia Coli Length = 396

Iteration: 1
 Score =  340 bits (873), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 174/402 (43%), Positives = 246/402 (61%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYS N GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSANFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1ASB|A Chain A, The Structural Basis For The Reduced Activity Of The D223a(D222a) Active Site Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  340 bits (871), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 174/402 (43%), Positives = 246/402 (61%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P F  AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFAFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1AAM|A Chain A, The Structural Basis For The Altered Substrate Specificity Of The R292d Active Site Mutant Of Aspartate Aminotransferase From E. Coli Length = 396

Iteration: 1
 Score =  340 bits (871), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 174/402 (43%), Positives = 246/402 (61%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K      YSNPP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIDANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|3AAT|A Chain A, Activity And Structure Of The Active-Site Mutants R386y And R386f Of Escherichia Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  339 bits (869), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 174/402 (43%), Positives = 246/402 (61%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    G +++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGFVNVAGMTPDNMAPLCEAIV 393

>pdb|1IX8|A Chain A, Aspartate Aminotransferase Active Site Mutant V39fN194A Length = 396

Iteration: 1
 Score =  339 bits (869), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 174/402 (43%), Positives = 246/402 (61%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGFYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           H PTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1B4X|A Chain A, Aspartate Aminotransferase From E. Coli, C191s Mutation, With Bound Maleate Length = 396

Iteration: 1
 Score =  338 bits (868), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 174/402 (43%), Positives = 246/402 (61%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HG  
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGSC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1G4V|A Chain A, Aspartate Aminotransferase Active Site Mutant N194a/y225f Length = 396

Iteration: 1
 Score =  338 bits (867), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 173/402 (43%), Positives = 246/402 (61%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           H PTGIDPT EQW+ +A +  EK  +P FD A+QGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAFQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1QIR|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191y Mutation, With Bound Maleate Length = 396

Iteration: 1
 Score =  338 bits (866), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 174/402 (43%), Positives = 246/402 (61%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HG  
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGYC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1ARI|A Chain A, Aspartate Aminotransferase, W140h Mutant, Maleate Complex Length = 396

Iteration: 1
 Score =  338 bits (866), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 174/402 (43%), Positives = 246/402 (61%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+  NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSHPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1QIS|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191f Mutation, With Bound Maleate Length = 396

Iteration: 1
 Score =  338 bits (866), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 174/402 (43%), Positives = 246/402 (61%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HG  
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGFC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1QIT|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191w Mutation, With Bound Maleate Length = 396

Iteration: 1
 Score =  337 bits (865), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 174/402 (43%), Positives = 246/402 (61%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HG  
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGWC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1BQA|A Chain A, Aspartate Aminotransferase P195a Mutant Length = 396

Iteration: 1
 Score =  337 bits (865), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 173/402 (43%), Positives = 245/402 (60%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HN TGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNATGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYS N GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSXNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1G7W|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR386L Length = 396

Iteration: 1
 Score =  337 bits (863), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 173/402 (43%), Positives = 245/402 (60%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           H PTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    G +++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGLVNVAGMTPDNMAPLCEAIV 393

>pdb|1G4X|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR292L Length = 396

Iteration: 1
 Score =  337 bits (863), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 173/402 (43%), Positives = 245/402 (60%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           H PTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K      YSNPP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAILANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1ARH|A Chain A, Aspartate Aminotransferase, Y225rR386A MUTANT Length = 396

Iteration: 1
 Score =  336 bits (862), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 173/402 (43%), Positives = 245/402 (60%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD A QGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFARQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    G +++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGAVNVAGMTPDNMAPLCEAIV 393

>pdb|1AHY|A Chain A, Aspartate Aminotransferase Hexamutant Length = 396

Iteration: 1
 Score =  335 bits (859), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 173/402 (43%), Positives = 246/402 (61%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGLYYDETGKIPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +     
Sbjct: 62  TKLYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YS+PP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSSPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|3ZZJ|A Chain A, Structure Of An Engineered Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  334 bits (857), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 173/402 (43%), Positives = 244/402 (60%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGQGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD A QGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAQQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K      YSNPP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIYANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|2D61|A Chain A, Aspartate Aminotransferase Mutant Ma With Maleic Acid Length = 396

Iteration: 1
 Score =  334 bits (857), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 172/402 (42%), Positives = 245/402 (60%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++  +AD    K++LG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YS+PP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRVNYSSPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1BQD|A Chain A, Aspartate Aminotransferase P138aP195A DOUBLE MUTANT Length = 396

Iteration: 1
 Score =  334 bits (857), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 172/402 (42%), Positives = 244/402 (60%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+ +W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNASWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HN TGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNATGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYS N GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSXNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|2D5Y|A Chain A, Aspartate Aminotransferase Mutant Mc With Isovaleric Acid Length = 396

Iteration: 1
 Score =  334 bits (856), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 172/402 (42%), Positives = 244/402 (60%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITTAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YS+PP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRVNYSSPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SF ++Q GMF F 
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFTIKQNGMFFFG 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRLNVAGMTPDNLAPLCEAIV 393

>pdb|1G7X|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR292LR386L Length = 396

Iteration: 1
 Score =  333 bits (854), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 172/402 (42%), Positives = 244/402 (60%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           H PTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K      YSNPP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAILANYSNPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    G +++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGLVNVAGMTPDNMAPLCEAIV 393

>pdb|4F5F|A Chain A, Structure Of Aspartate Aminotransferase Conversion To Tyrosine Aminotransferase: Chimera P1. Length = 406

Iteration: 1
 Score =  333 bits (853), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 173/405 (42%), Positives = 243/405 (60%), Gaps = 10/405 (2%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K++LGVG Y+ E  +  VL  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVLTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL ++GL  F + T ELLFG  ++++ ++R  T Q   G+G+LR+ A  + +  
Sbjct: 69  NETTKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVGADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+P+W NHK IFN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPSWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTGIDPT EQW+ +A +  EK  +P  D AYQGF  G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLIDFAYQGFGRG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
           L+VA SYS N GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP H
Sbjct: 248 LIVASSYSXNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAH 299
Query: 356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
           GA +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMF
Sbjct: 300 GASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMF 358
Query: 416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           SF+GL K Q   +  ++ VY    GRI++AG++      L +AI+
Sbjct: 359 SFSGLTKEQVLRLREEFGVYAVASGRINVAGMTPDNMAPLCEAIV 403

>pdb|1TOE|A Chain A, Unliganded Structure Of Hexamutant + A293d Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  332 bits (852), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 172/402 (42%), Positives = 245/402 (60%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGLYYDETGKIPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +     
Sbjct: 62  TKLYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYS N GLY ER+GA  +V + S+   R          SQ+K   R  YS+PP HGA 
Sbjct: 241 ASSYSXNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRDNYSSPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEK-GANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|2D66|A Chain A, Aspartate Aminotransferase Mutant Mab Length = 396

Iteration: 1
 Score =  331 bits (848), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 171/402 (42%), Positives = 243/402 (60%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++  +AD    K++LG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P W  HK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPGWPTHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YS+PP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRVNYSSPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|4F5J|A Chain A, Rational Design And Directed Evolution For Conversion Of Substrate Specificity From E.coli Aspartate Aminotransferase To Tyrosine Aminotransferase: Mutant P5. Length = 406

Iteration: 1
 Score =  330 bits (845), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 171/405 (42%), Positives = 243/405 (60%), Gaps = 10/405 (2%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K++LGVG Y+ E  +  VL  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVLTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL ++GL  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +  
Sbjct: 69  NETTKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+P+W NHK IFN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPSWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTG DPT EQW+ +A +  EK  +P  D+AYQGF  G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGADPTLEQWQTLAQLSVEKGWLPLIDIAYQGFGRG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
           L+VA S S N GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP H
Sbjct: 248 LIVASSCSXNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSNPPAH 299
Query: 356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
           GA +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMF
Sbjct: 300 GASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMF 358
Query: 416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           SF+GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 359 SFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 403

>pdb|1CZC|A Chain A, Aspartate Aminotransferase Mutant Atb17139S142N WITH GLUTARIC ACID Length = 396

Iteration: 1
 Score =  328 bits (842), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 170/402 (42%), Positives = 242/402 (60%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++  +AD    K++LG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVR 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+G   +V + S+   R          SQ+K   R  YS+PP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGTCTLVAADSETVDRAF--------SQMKAAIRVNYSSPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++GN AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SF ++Q GMF F 
Sbjct: 293 VVATILGNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEK-GANRDFSFTIKQNGMFFFG 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRLNVAGMTPDNLAPLCEAIV 393

>pdb|4F5I|A Chain A, Substrate Specificity Conversion Of E. Coli Pyridoxal-5'-phosphate Dependent Aspartate Aminotransferase To Tyrosine Aminotransferase: Chimera P4. Length = 406

Iteration: 1
 Score =  328 bits (842), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 171/405 (42%), Positives = 243/405 (60%), Gaps = 10/405 (2%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K++LGVG Y+ E  +  V+  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVMTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL I+G+  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +  
Sbjct: 69  NETTKTYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+PTW NHK IFN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPTWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTGIDPT EQW+ +A +  EK  +P  D+AYQGF  G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLIDIAYQGFGRG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
           L+VA S S N  LY ER+GA  +V + S+   R          SQ+K   R  YS+PP H
Sbjct: 248 LIVASSCSXNFSLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSSPPAH 299
Query: 356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
           GA +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMF
Sbjct: 300 GASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMF 358
Query: 416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           SF+GL K Q   +  ++ VY    GRI++AG++      L +AI+
Sbjct: 359 SFSGLTKEQVLRLREEFGVYAVASGRINVAGMTPDNMAPLCEAIV 403

>pdb|4F5H|A Chain A, Intercoversion Of Substrate Specificity: E. Coli Aspatate Aminotransferase To Tyrosine Aminotransferase: Chimera P3. Length = 406

Iteration: 1
 Score =  328 bits (841), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 169/405 (41%), Positives = 243/405 (60%), Gaps = 10/405 (2%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K++LG+G Y+ E  +  V+  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKVDLGIGVYKDETGKTPVMTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL ++GL  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +  
Sbjct: 69  NETTKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+P+W NHK IFN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPSWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTG DPT EQW+ +A +  EK  +P  D AYQGF  G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGADPTLEQWQTLAQLSVEKGWLPLIDFAYQGFGRG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
           L+VA SYS N GLY ER+GA  +V + S+   R          SQ+K   R  YS+PP H
Sbjct: 248 LIVASSYSXNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRANYSSPPAH 299
Query: 356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
           GA +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMF
Sbjct: 300 GASVVATILSNDALRAIWEQELTDMRQRIQRLRQLFVNTLQEKG-ANRDFSFIIKQNGMF 358
Query: 416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           SF+GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 359 SFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 403

>pdb|4F5G|A Chain A, Rational Design And Directed Evolution Of E. Coli Apartate Aminotransferase To Tyrosine Aminotransferase: Mutant P2. Length = 406

Iteration: 1
 Score =  327 bits (839), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 169/405 (41%), Positives = 242/405 (59%), Gaps = 10/405 (2%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K++LGVG Y+ E  +  VL  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVLTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL ++GL  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +  
Sbjct: 69  NETTKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+P+W NHK IFN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPSWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTG DPT EQW+ +A +  EK  +P  D+AYQGF  G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGADPTLEQWQTLAQLSVEKGWLPLIDIAYQGFGRG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
           L+VA S S N GLY ER+GA  +V + S+   R           Q+K   R  YSNPP H
Sbjct: 248 LIVASSCSXNFGLYNERVGACTLVAADSETVDRAF--------GQMKAAIRANYSNPPAH 299
Query: 356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
           GA +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SF+++Q GMF
Sbjct: 300 GASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFVIKQNGMF 358
Query: 416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           SF+GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 359 SFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 403

>pdb|4F5K|A Chain A, Substrate Specificity Conversion Of Aspartate Aminotransferase To Tyrosine Aminotransferase By The Janus Algorithm: Chimera P6. Length = 406

Iteration: 1
 Score =  326 bits (836), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/405 (41%), Positives = 241/405 (59%), Gaps = 10/405 (2%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K++LGVG Y+ E  +  V+  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVMTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL ++GL  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +  
Sbjct: 69  NETTKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+PTW NHK IFN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPTWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTG DPT EQW+ +A +  EK  +P  D+AYQGF  G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGADPTLEQWQTLAQLSVEKGWLPLIDIAYQGFGRG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
           L+VA S S N  LY ER+GA  +V + S+   R           Q+K   R  YSNPP H
Sbjct: 248 LIVASSCSXNFSLYNERVGACTLVAADSETVDRAF--------GQMKAAIRANYSNPPAH 299
Query: 356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
           GA +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMF
Sbjct: 300 GASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMF 358
Query: 416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           SF+GL K Q   +  ++ VY    GRI++AG++      L +AI+
Sbjct: 359 SFSGLTKEQVLRLREEFGVYAVASGRINVAGMTPDNMAPLCEAIV 403

>pdb|4H51|A Chain A, Crystal Structure Of A Putative Aspartate Aminotransferase From Leishmania Major Friedlin Length = 420

Iteration: 1
 Score =  326 bits (836), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 182/424 (42%), Positives = 252/424 (59%), Gaps = 21/424 (4%)
Query: 49  SMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKK 108
           +  A     R++ +    PD I  +++   A     K NL +GAYR E+ +PY L VV+K
Sbjct: 11  TQAAMTTAERWQKIQAQAPDVIFDLAKR-AAAAKGPKANLVIGAYRDEQGRPYPLRVVRK 69
Query: 109 AENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAA 168
           AE L+L+   + EYLPI G   F     ++++G  N+V  E  VA VQ LSGTG++ L A
Sbjct: 70  AEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYG--NTVELENLVA-VQTLSGTGAVSLGA 126
Query: 169 ALIERYFPG--AKVLISSPTWGNHKNIFNDARVPWSE---YRYYDPKTVGLDFEGMIADI 223
            L+ R F      + +S PTW NH  +   A   W     Y YYDPKTV L+FEGM  DI
Sbjct: 127 KLLTRVFDAETTPIYLSDPTWPNHYGVVKAA--GWKNICTYAYYDPKTVSLNFEGMKKDI 184
Query: 224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA 283
            AAP GS  +LH CAHNPTG+DP+ EQW +IA ++  K+H  FFD AYQG+ASGSLD DA
Sbjct: 185 LAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDA 244
Query: 284 SSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKR 343
            + RLFA RG+E+L+AQS+S N+GLY+ER G ++++       A         VKS +  
Sbjct: 245 YAARLFARRGIEVLLAQSFSXNMGLYSERAGTLSLLLKDKTKRA--------DVKSVMDS 296
Query: 344 LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK 403
           L R  Y+ PP HGAR+   ++ N  L  EW+AE+  MA RI+ +R+ ++D L      G 
Sbjct: 297 LIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGS 356
Query: 404 DWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSY 463
            W  ++ QIGMFSF GL+KAQ +   N  ++++T  GR ++AGL+      LA  I D+ 
Sbjct: 357 -WEHVINQIGMFSFLGLSKAQCEYCQNH-NIFITVSGRANMAGLTHETALMLAQTINDAV 414
Query: 464 HNVS 467
            NV+
Sbjct: 415 RNVN 418

>pdb|1TOJ|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  326 bits (836), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 167/402 (41%), Positives = 242/402 (60%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T    DPILG+++ F+AD    K++LG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITATTADPILGLADLFRADERPGKIDLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYS N  LY ER+GA  +V + S+   R           Q+K   R  YS+PP HGA 
Sbjct: 241 ASSYSXNFALYNERVGACTLVAADSETVDRAF--------GQMKAAIRANYSSPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1TOG|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept + A293d Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  326 bits (835), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 167/402 (41%), Positives = 242/402 (60%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T    DPILG+++ F+AD    K++LG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITATTADPILGLADLFRADERPGKIDLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYS N  LY ER+GA  +V + S+   R           Q+K   R  YS+PP HGA 
Sbjct: 241 ASSYSXNFALYNERVGACTLVAADSETVDRAF--------GQMKAAIRDNYSSPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEK-GANRDFSFIIKQNGMFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1YOO|A Chain A, Aspartate Aminotransferase Mutant Atb17 With Isovaleric Acid Length = 396

Iteration: 1
 Score =  325 bits (833), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 169/402 (42%), Positives = 240/402 (59%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++  +AD    K++LG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVR 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P W  HK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPGWPTHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+G   +V + S+   R          SQ+K   R  YS+PP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGTCTLVAADSETVDRAF--------SQMKAAIRVNYSSPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++GN AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SF ++Q GMF F 
Sbjct: 293 VVATILGNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEK-GANRDFSFTIKQNGMFFFG 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRLNVAGMTPDNLAPLCEAIV 393

>pdb|2D64|A Chain A, Aspartate Aminotransferase Mutant Mabc With Isovaleric Acid Length = 396

Iteration: 1
 Score =  324 bits (831), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 169/402 (42%), Positives = 240/402 (59%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++  +AD    K++LG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P W  HK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPGWPTHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YS+PP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAF--------SQMKAAIRVNYSSPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SF ++Q GMF F 
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFTIKQNGMFFFG 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRLNVAGMTPDNLAPLCEAIV 393

>pdb|1YAA|A Chain A, Aspartate Aminotransferase From Saccharomyces Cerevisiae Cytoplasm Length = 412

Iteration: 1
 Score =  322 bits (824), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 167/411 (40%), Positives = 236/411 (57%), Gaps = 21/411 (5%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-ERG 117
           F  + + PPD + G+ + +  D    K++LG+GAYR +  +P+VL  VK AE L+  +  
Sbjct: 5   FNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSS 64
Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
            N EYL I GL +     A+++FG  +  L+E RV +VQ LSGTG+L ++A    ++FP 
Sbjct: 65  YNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPD 124
Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
             V +S PTW NH  IF +  +  + Y Y+  +T  LD  G +  I+ AP GS  +LH C
Sbjct: 125 KLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSC 184
Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME-- 295
           AHNPTG+DPT EQW +I D I  KNHI  FD AYQGFA+G LD DA +VRL    G+E  
Sbjct: 185 AHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRL----GVEKL 240
Query: 296 -----LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQ--VKSQLKRLARPM 348
                + V QS++KN G+Y ER+G  ++  +      +  +   I+  V SQL ++ R  
Sbjct: 241 STVSPVFVCQSFAKNAGMYGERVGCFHLALT------KQAQNKTIKPAVTSQLAKIIRSE 294
Query: 349 YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI 408
            SNPP +GA+IVA ++  P L ++W  +M  M+ RI  +R  L D L      G +W  I
Sbjct: 295 VSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPG-NWDHI 353
Query: 409 LRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
           + Q GMFSFTGL       +     VY+   GR S+AGL+    EY+A AI
Sbjct: 354 VNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAI 404

>pdb|3MEB|A Chain A, Structure Of Cytoplasmic Aspartate Aminotransferase From Giardia Lamblia Length = 448

Iteration: 1
 Score =  318 bits (815), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 169/420 (40%), Positives = 246/420 (58%), Gaps = 12/420 (2%)
Query: 55  NVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML 114
           ++S F G   +PPD IL ++  + ADT+ KK+NLGVGAYR E  +P++L  VK+AE ++ 
Sbjct: 21  SMSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIIS 80
Query: 115 E--RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE 172
                 NKEY P+ G   F +    L+FG D+   +E R+A+ Q LSGTGSL +    + 
Sbjct: 81  SDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLH 140
Query: 173 RYFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAP 227
            + P A+  + S TW NH  I    FN  +VP+ EY Y      + +DF     DI++AP
Sbjct: 141 LWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAP 200
Query: 228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR 287
             S  L H CAHNP+GID T  QW+++  +++EK HI FFD AYQGFA+GS + DA +VR
Sbjct: 201 EKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVR 260
Query: 288 LFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP 347
           +F   G+E+LVAQS+SKN GLY ERIG ++VV +  + +    +     + S +    R 
Sbjct: 261 MFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRK 320
Query: 348 MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK---- 403
            +S   +HGA IV  +V +  L   +   ++ M+ RI  +R  L  SL+ +   G     
Sbjct: 321 TWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKG 380
Query: 404 DWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTK-DGRISLAGLSLAKCEYLADAIIDS 462
            W  IL  IGMF+FTGL     D +  KW +Y+ K  GR+S+ GL+ + C+Y+A+AI D+
Sbjct: 381 TWDHILTAIGMFTFTGLTPEHVDYLKEKWSIYLVKAGGRMSMCGLTESNCDYVAEAIHDA 440

>pdb|4F4E|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase From Burkholderia Pseudomallei Covalently Bound To Pyridoxal Phosphate Length = 420

Iteration: 1
 Score =  306 bits (785), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 169/405 (41%), Positives = 248/405 (61%), Gaps = 10/405 (2%)
Query: 55  NVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML 114
           ++S F  V +AP DPILG++EAF ADT   K+NLGVG Y  E+ +  +L  V+ AE   +
Sbjct: 21  SMSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARV 80
Query: 115 ERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY 174
           E G  + YLPI+G+AA++    +LL G D+ ++   RV T Q L GTG+L++ A  +   
Sbjct: 81  EAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTL 140
Query: 175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILL 234
            P AKV IS P+W NH+ +F+ A      Y YYD KT G++F+GM+A +     G+ ++L
Sbjct: 141 NPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVL 200
Query: 235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM 294
           H C HNPTG+D    QW ++ +V++ +  +PF D+AYQGF   S++ DA++VRLFA   +
Sbjct: 201 HACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGE-SIEADAAAVRLFAAANL 259
Query: 295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPV 354
            + V+ S+S +  LY ER+GA++++  S D AAR        V SQLKR+ R  YSNPP 
Sbjct: 260 NVFVSSSFSXSFSLYGERVGALSIITDSKDEAAR--------VLSQLKRVIRTNYSNPPT 311
Query: 355 HGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGM 414
           HG  IVA V+ +P L   W  E+  M  RI+ +R  L + L A     +D+SFI  Q GM
Sbjct: 312 HGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIE-RDFSFINAQRGM 370
Query: 415 FSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
           FS++GL  AQ D +  ++ +Y    GRI +A L+    + +A+AI
Sbjct: 371 FSYSGLTSAQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAI 415

>pdb|4EFF|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase From Burkholderia Pseudomallei Length = 420

Iteration: 1
 Score =  306 bits (785), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 170/405 (41%), Positives = 249/405 (61%), Gaps = 10/405 (2%)
Query: 55  NVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML 114
           ++S F  V +AP DPILG++EAF ADT   K+NLGVG Y  E+ +  +L  V+ AE   +
Sbjct: 21  SMSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARV 80
Query: 115 ERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY 174
           E G  + YLPI+G+AA++    +LL G D+ ++   RV T Q L GTG+L++ A  +   
Sbjct: 81  EAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTL 140
Query: 175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILL 234
            P AKV IS P+W NH+ +F+ A      Y YYD KT G++F+GM+A +     G+ ++L
Sbjct: 141 NPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVL 200
Query: 235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM 294
           H C HNPTG+D    QW ++ +V++ +  +PF D+AYQGF   S++ DA++VRLFA   +
Sbjct: 201 HACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGE-SIEADAAAVRLFAAANL 259
Query: 295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPV 354
            + V+ S+SK+  LY ER+GA++++  S D AAR        V SQLKR+ R  YSNPP 
Sbjct: 260 NVFVSSSFSKSFSLYGERVGALSIITDSKDEAAR--------VLSQLKRVIRTNYSNPPT 311
Query: 355 HGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGM 414
           HG  IVA V+ +P L   W  E+  M  RI+ +R  L + L A     +D+SFI  Q GM
Sbjct: 312 HGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIE-RDFSFINAQRGM 370
Query: 415 FSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
           FS++GL  AQ D +  ++ +Y    GRI +A L+    + +A+AI
Sbjct: 371 FSYSGLTSAQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAI 415

>pdb|3TAT|A Chain A, Tyrosine Aminotransferase From E. Coli Length = 397

Iteration: 1
 Score =  306 bits (784), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 163/402 (40%), Positives = 240/402 (59%), Gaps = 11/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEE-LQPYVLDVVKKAENLMLERG 117
           F+ V     DPIL + E FK D    K+NL +G Y  E+ + P +  V +    L  +  
Sbjct: 2   FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPH 61
Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
               YLP+EGL  +    A LLFGAD+ VLK+QRVAT+Q L G+G+L++ A  ++RYFP 
Sbjct: 62  GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE 121
Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
           + V +S PTW NH  IF  A    S Y +YD  T G+ F  ++A +K  P  S +LLH C
Sbjct: 122 SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPC 181
Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
            HNPTG D T +QW+ + ++++ +  IPF D+AYQGF +G ++ DA ++R  A+ G+  L
Sbjct: 182 CHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPAL 240
Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGA 357
           V+ S+SK   LY ER+G ++V+C  ++ A R        V  QLK   R  YS+PP  GA
Sbjct: 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGR--------VLGQLKATVRRNYSSPPNFGA 292
Query: 358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF 417
           ++VA V+ + AL   W AE+E M  RI  +RQ+L   LS  +   +++ ++L Q GMFS+
Sbjct: 293 QVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLST-EMPERNFDYLLNQRGMFSY 351
Query: 418 TGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
           TGL+ AQ D +  ++ VY+   GR+ +AGL+ A  + +A A 
Sbjct: 352 TGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAF 393

>pdb|3FSL|A Chain A, Crystal Structure Of Tyrosine Aminotransferase Tripple Mutant (P181q, R183g,A321k) From Escherichia Coli At 2.35 A Resolution Length = 397

Iteration: 1
 Score =  304 bits (779), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 162/402 (40%), Positives = 239/402 (59%), Gaps = 11/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEE-LQPYVLDVVKKAENLMLERG 117
           F+ V     DPIL + E FK D    K+NL +G Y  E+ + P +  V +    L  +  
Sbjct: 2   FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPH 61
Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
               YLP+EGL  +    A LLFGAD+ VLK+QRVAT+Q L G+G+L++ A  ++RYFP 
Sbjct: 62  GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE 121
Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
           + V +S PTW NH  IF  A    S Y +YD  T G+ F  ++A +K    GS +LLH C
Sbjct: 122 SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPC 181
Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
            HNPTG D T +QW+ + ++++ +  IPF D+AYQGF +G ++ DA ++R  A+ G+  L
Sbjct: 182 CHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPAL 240
Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGA 357
           V+ S+SK   LY ER+G ++V+C  ++ A R        V  QLK   R  YS+PP  GA
Sbjct: 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGR--------VLGQLKATVRRNYSSPPNFGA 292
Query: 358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF 417
           ++VA V+ + AL   W  E+E M  RI  +RQ+L   LS  +   +++ ++L Q GMFS+
Sbjct: 293 QVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLST-EMPERNFDYLLNQRGMFSY 351
Query: 418 TGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
           TGL+ AQ D +  ++ VY+   GR+ +AGL+ A  + +A A 
Sbjct: 352 TGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAF 393

>pdb|3UAK|A Chain A, Crystal Structure Of De Novo Designed Cysteine Esterase Ech14, Northeast Structural Genomics Consortium Target Or54 Length = 406

Iteration: 1
 Score =  285 bits (728), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 161/402 (40%), Positives = 230/402 (57%), Gaps = 10/402 (2%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPI G+++ F+AD    K+NLG+  Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPIYGLADLFRADERPGKINLGLALYYDETGKIPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   G G+LR+AA  + +     
Sbjct: 62  TKLYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGHGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V + +P+    K++FN A +   EY YYD +   LDF+ +I  +  A  G  +L  GC 
Sbjct: 122 RVWVYNPSSNCSKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFTGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P F   YQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFTFFYQGFARG-LEEDAEGLRAFAAXHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY E +GA  +V + S+   R          SQ K   R  YS+PP HGA 
Sbjct: 241 ASSYSKNFGLYNESVGACTLVAADSETVDRAF--------SQXKAAIRDNYSSPPAHGAS 292
Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+     RI+  RQ   ++L  K  + +D+SFI++Q G FSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDXRQRIQRXRQLFVNTLQEK-GANRDFSFIIKQNGXFSFS 351
Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 460
           GL K Q   +  ++ VY    GR+++AG +      L +AI+
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGXTPDNXAPLCEAIV 393

>pdb|1AY4|A Chain A, Aromatic Amino Acid Aminotransferase Without Substrate Length = 394

Iteration: 1
 Score =  278 bits (711), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 158/396 (39%), Positives = 223/396 (56%), Gaps = 15/396 (3%)
Query: 67  PDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE 126
           PD IL +   F+AD  + K++LGVG Y+       ++  V  AE  MLE    K Y  + 
Sbjct: 10  PDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLS 69
Query: 127 GLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPT 186
           G   F K   EL+ G     LK +  AT+  + GTG+LR A  L     P  +V +S PT
Sbjct: 70  GEPEFQKAMGELILG---DGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPT 126
Query: 187 WGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDP 246
           W NH +I N   +P   YRY+D +T G+DFEGM AD+ AA  G  +LLHGC HNPTG + 
Sbjct: 127 WPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANL 186
Query: 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL 306
           T +QW +IA ++++   +P  D+AYQGF  G L+ DA+  RL A+R  E+L+A S SKN 
Sbjct: 187 TLDQWAEIASILEKTGALPLIDLAYQGFGDG-LEEDAAGTRLIASRIPEVLIAASCSKNF 245
Query: 307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGN 366
           G+Y ER G +  +C  +D A R  E+A    +  +  L R  YS PP HGA+IV+ V+  
Sbjct: 246 GIYRERTGCLLALC--ADAATR--ELA----QGAMAFLNRQTYSFPPFHGAKIVSTVLTT 297
Query: 367 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD-WSFILRQIGMFSFTGLNKAQS 425
           P L  +W AE+E +   +  +R++L   L  +D SG D + F+    GMFS  G    Q 
Sbjct: 298 PELRADWMAELEAVRSGMLRLREQLAGEL--RDLSGSDRFGFVAEHRGMFSRLGATPEQV 355
Query: 426 DNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 461
             +  ++ +YM  D RI++AGL+      LA AII+
Sbjct: 356 KRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIE 391

>pdb|3K7Y|A Chain A, Aspartate Aminotransferase Of Plasmodium Falciparum Length = 405

Iteration: 1
 Score =  207 bits (528), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 210/395 (53%), Gaps = 13/395 (3%)
Query: 68  DPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEG 127
           D IL  +  FK DT E+K+NL +G    ++   ++ D V  A+ L+ E  + K YL   G
Sbjct: 14  DNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADKLVTENYKEKPYLLGNG 73
Query: 128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTW 187
              F+ +T  L+FG ++  ++++++ T+Q + GTG++ +    + +      + +++P +
Sbjct: 74  TEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFL-KMLNVETLYVTNPPY 132
Query: 188 GNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPT 247
            NH N+            ++D   + ++++  + D++  P GS ++L    +NP  ++  
Sbjct: 133 INHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIE 192
Query: 248 PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG 307
            + +++I +++  K H+  FD+AYQGF   +L+ D   +R F  + +   V QS+SKN+ 
Sbjct: 193 EKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMS 252
Query: 308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNP 367
           LY ER GA+++VC + +      E  +  V + L  + R  YS+P +H  RI+  ++ N 
Sbjct: 253 LYGERAGALHIVCKNQE------EKKI--VFNNLCFIVRKFYSSPVIHTNRILCQLLNNQ 304
Query: 368 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS---GKDWSFILRQIGMFSFTGLNKAQ 424
            L   W  E+  ++ RI N R   F+ L    K      DW+   +Q G+FSF  L    
Sbjct: 305 NLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLAKI 364
Query: 425 SDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
           ++++    H+Y+  +GRI+++G++    +Y+AD I
Sbjct: 365 AEHLKTH-HIYIINNGRINVSGITKNNVDYIADKI 398

>pdb|3RQ1|A Chain A, Crystal Structure Of Aminotransferase Class I And Ii From Veillonella Parvula Length = 418

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 139/332 (41%), Gaps = 28/332 (8%)
Query: 78  KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE 137
           K +  E  +N  +GA   EE     L  VK+ E L L   E+  Y PI G+  F     +
Sbjct: 33  KENGRENVVNGTLGAIHDEEGNLVFLKTVKE-EYLSLSDSEHVGYAPIAGIPDFLCAAEK 91
Query: 138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF-PGAKVLISSPTWGNHKNIFND 196
             FG   +   E  + ++    GTG +     LI  Y  PG +VL +   WG ++ I +D
Sbjct: 92  ECFG---NFRPEGHIRSIATAGGTGGIH---HLIHNYTEPGDEVLTADWYWGAYRVICSD 145
Query: 197 ARVPWSEYRYYDPKTV--GLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKI 254
                  Y  +D         F+  + ++ A      ++ +   +NPTG     + W+ I
Sbjct: 146 TGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSI 205
Query: 255 ADVIQE------KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL--VAQSYSKNL 306
            + +++       N I   DVAY  + SG  D   +    F+    E+L  V  S SK  
Sbjct: 206 LNFLKDLVAIGRNNVIIGIDVAYLDY-SGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGF 264
Query: 307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGN 366
             Y +R+GA   +    ++A    EV         K  +R  +SN      R  AN+V +
Sbjct: 265 TXYGQRVGAXIGISDDEEIADEFFEVN--------KSTSRATWSNICRPAXRTXANIVAD 316
Query: 367 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK 398
           PA F E++AE       I++ R  +F   +A+
Sbjct: 317 PAKFKEYEAERNCYYQLIRD-RADIFKQEAAQ 347

>pdb|4EMY|A Chain A, Crystal Structure Of Aminotransferase From Anaerococcus Prevotii Dsm 20548. Length = 413

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 105/252 (41%), Gaps = 34/252 (13%)
Query: 115 ERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY 174
           +R     Y PIEG   + K+  + LFG       E  ++ +    GTG++R  +A+    
Sbjct: 68  DRSHIASYAPIEGEKDYRKIVIDTLFGP---YKPEGYISAIATPGGTGAIR--SAIFSYL 122
Query: 175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDF------EGMIADIKAAP 227
             G  ++     W  ++ I  +    +  + ++ D     +D       EG+    + A 
Sbjct: 123 DEGDPLICHDYYWAPYRKICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIAS 182
Query: 228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP------FFDVAYQGFASGSLDN 281
                L++   +NPTG   + E+W+++   ++EK            DVAY  FA G  D 
Sbjct: 183 -----LINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFA-GDGDQ 236
Query: 282 DASSVRLFAT--RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKS 339
                  F+   R + ++VA S SK+   Y  R GA   + SS ++        + + ++
Sbjct: 237 QRKFFEKFSNLPRNLFVVVAFSXSKSHTAYGLRSGAAVGISSSKEI--------IEEFEA 288
Query: 340 QLKRLARPMYSN 351
            L   AR  +SN
Sbjct: 289 SLAHSARCNWSN 300

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	467
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	0.0
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	0.0
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	0.0
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	0.0
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	0.0
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	0.0
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	0.0
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	0.0
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	0.0
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	0.0
3rq1_A	418	Aminotransferase class I and II; structural genomi	0.0
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	0.0
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	1e-146
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	2e-06
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	4e-06
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	2e-05
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	3e-05
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	1e-04
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	1e-04
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	3e-04
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	4e-04
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	5e-04
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	6e-04

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* Length = 420

 Score =  664 bits (1716), Expect = 0.0
 Identities = 169/415 (40%), Positives = 248/415 (59%), Gaps = 10/415 (2%)

Query: 47  RVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVV 106
                   ++S F  V +AP DPILG++EAF ADT   K+NLGVG Y  E+ +  +L  V
Sbjct: 13  EAQTQGPGSMSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAV 72

Query: 107 KKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRL 166
           + AE   +E G  + YLPI+G+AA++    +LL G D+ ++   RV T Q L GTG+L++
Sbjct: 73  RDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKI 132

Query: 167 AAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA 226
            A  +    P AKV IS P+W NH+ +F+ A      Y YYD KT G++F+GM+A +   
Sbjct: 133 GADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGY 192

Query: 227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV 286
             G+ ++LH C HNPTG+D    QW ++ +V++ +  +PF D+AYQGF    ++ DA++V
Sbjct: 193 EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGES-IEADAAAV 251

Query: 287 RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLAR 346
           RLFA   + + V+ S+SK+  LY ER+GA++++  S D AAR        V SQLKR+ R
Sbjct: 252 RLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAAR--------VLSQLKRVIR 303

Query: 347 PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS 406
             YSNPP HG  IVA V+ +P L   W  E+  M  RI+ +R  L + L A     +D+S
Sbjct: 304 TNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAA-GIERDFS 362

Query: 407 FILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 461
           FI  Q GMFS++GL  AQ D +  ++ +Y    GRI +A L+    + +A+AI  
Sbjct: 363 FINAQRGMFSYSGLTSAQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAIAA 417

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* Length = 401

 Score =  659 bits (1703), Expect = 0.0
 Identities = 201/406 (49%), Positives = 278/406 (68%), Gaps = 10/406 (2%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL+ V+KAE ++  +
Sbjct: 2   SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK 61

Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176
             +KEYLPI GLA F + +AEL  G ++   K  R  TVQG+SGTGSLR+ A  ++R+F 
Sbjct: 62  KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFK 121

Query: 177 GAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
            ++ V +  P+WGNH  IF DA +    YRYYDPKT  LDF G + DI   P  S ILLH
Sbjct: 122 FSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLH 181

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DP  EQW+++A V++++N + +FD+AYQGFASG ++ DA ++R F  +G++
Sbjct: 182 ACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
           ++++QSY+KN+GLY ER GA  V+C  ++ A R        V+SQLK L RPMYSNPP++
Sbjct: 242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKR--------VESQLKILIRPMYSNPPMN 293

Query: 356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
           GARI + ++  P L  EW  E++ MA RI ++R +L  +L  +  S  +W  I  QIGMF
Sbjct: 294 GARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKE-GSSHNWQHITDQIGMF 352

Query: 416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 461
            FTGL   Q + +T ++ +YMTKDGRIS+AG++ +   YLA AI  
Sbjct: 353 CFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQ 398

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} PDB: 3tat_A* Length = 397

 Score =  651 bits (1682), Expect = 0.0
 Identities = 164/404 (40%), Positives = 239/404 (59%), Gaps = 11/404 (2%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAEN-LMLERG 117
           F+ V     DPIL + E FK D    K+NL +G Y  E+     L  V +AE  L  +  
Sbjct: 2   FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPH 61

Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
               YLP+EGL  +    A LLFGAD+ VLK+QRVAT+Q L G+G+L++ A  ++RYFP 
Sbjct: 62  GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE 121

Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
           + V +S PTW NH  IF  A    S Y +YD  T G+ F  ++A +K    GS +LLH C
Sbjct: 122 SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPC 181

Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
            HNPTG D T +QW+ + ++++ +  IPF D+AYQGF +G ++ DA ++R  A+ G+  L
Sbjct: 182 CHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPAL 240

Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGA 357
           V+ S+SK   LY ER+G ++V+C  ++ A R        V  QLK   R  YS+PP  GA
Sbjct: 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGR--------VLGQLKATVRRNYSSPPNFGA 292

Query: 358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF 417
           ++VA V+ + AL   W  E+E M  RI  +RQ+L   LS +    +++ ++L Q GMFS+
Sbjct: 293 QVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTE-MPERNFDYLLNQRGMFSY 351

Query: 418 TGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 461
           TGL+ AQ D +  ++ VY+   GR+ +AGL+ A  + +A A   
Sbjct: 352 TGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAA 395

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... Length = 396

 Score =  650 bits (1680), Expect = 0.0
 Identities = 174/403 (43%), Positives = 246/403 (61%), Gaps = 10/403 (2%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61

Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121

Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181

Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240

Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYS N GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSXNFGLYNERVGACTLVAADSETVDR--------AFSQMKAAIRANYSNPPAHGAS 292

Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEK-GANRDFSFIIKQNGMFSFS 351

Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 461
           GL K Q   +  ++ VY    GR+++AG++      L +AI+ 
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVA 394

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* Length = 394

 Score =  650 bits (1679), Expect = 0.0
 Identities = 149/403 (36%), Positives = 214/403 (53%), Gaps = 13/403 (3%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
              +    PD IL +   F+AD  + K++LGVG Y+       ++  V  AE  MLE   
Sbjct: 2   LGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET 61

Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K Y  + G   F K   EL+ G     LK +  AT+  + GTG+LR A  L     P  
Sbjct: 62  TKTYAGLSGEPEFQKAMGELILGDG---LKSETTATLATVGGTGALRQALELARMANPDL 118

Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S PTW NH +I N   +P   YRY+D +T G+DFEGM AD+ AA  G  +LLHGC 
Sbjct: 119 RVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCC 178

Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTG + T +QW +IA ++++   +P  D+AYQGF  G L+ DA+  RL A+R  E+L+
Sbjct: 179 HNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDG-LEEDAAGTRLIASRIPEVLI 237

Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A S SKN G+Y ER G +  +C+ +              +  +  L R  YS PP HGA+
Sbjct: 238 AASCSKNFGIYRERTGCLLALCADAATREL--------AQGAMAFLNRQTYSFPPFHGAK 289

Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           IV+ V+  P L  +W AE+E +   +  +R++L   L         + F+    GMFS  
Sbjct: 290 IVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDL-SGSDRFGFVAEHRGMFSRL 348

Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 461
           G    Q   +  ++ +YM  D RI++AGL+      LA AII+
Sbjct: 349 GATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIE 391

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} Length = 405

 Score =  649 bits (1676), Expect = 0.0
 Identities = 110/413 (26%), Positives = 211/413 (51%), Gaps = 13/413 (3%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
                +     D IL  +  FK DT E+K+NL +G    ++   ++ D V  A+ L+ E 
Sbjct: 3   KLLSSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADKLVTEN 62

Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176
            + K YL   G   F+ +T  L+FG ++  ++++++ T+Q + GTG++ +    ++    
Sbjct: 63  YKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV 122

Query: 177 GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG 236
              + +++P + NH N+            ++D   + ++++  + D++  P GS ++L  
Sbjct: 123 -ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQI 181

Query: 237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL 296
             +NP  ++   + +++I +++  K H+  FD+AYQGF   +L+ D   +R F  + +  
Sbjct: 182 SCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAF 241

Query: 297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHG 356
            V QS+SKN+ LY ER GA+++VC + +            V + L  + R  YS+P +H 
Sbjct: 242 SVCQSFSKNMSLYGERAGALHIVCKNQEEKKI--------VFNNLCFIVRKFYSSPVIHT 293

Query: 357 ARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK---SGKDWSFILRQIG 413
            RI+  ++ N  L   W  E+  ++ RI N R   F+ L    K      DW+   +Q G
Sbjct: 294 NRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRG 353

Query: 414 MFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNV 466
           +FSF  L    ++++    H+Y+  +GRI+++G++    +Y+AD I  S   +
Sbjct: 354 LFSFVPLLAKIAEHLKTH-HIYIINNGRINVSGITKNNVDYIADKICLSLSQI 405

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} Length = 409

 Score =  648 bits (1673), Expect = 0.0
 Identities = 167/414 (40%), Positives = 255/414 (61%), Gaps = 15/414 (3%)

Query: 49  SMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKK 108
             +  +        +M  PDPILG+ + F+ D  ++K+NL +G YR +  QP+VL+ VK+
Sbjct: 7   HHMGTLEAQTQGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQ 66

Query: 109 AENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAA 168
           A       G N +Y P+ G+A+F +   +L FG   + L++ R+A+ Q L GTG+LR+  
Sbjct: 67  AT-----LGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGG 121

Query: 169 ALIERYFPGAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP 227
            L+ R+      +      + NH++IF  A +  + Y YYDP T GL+  GM+  +  AP
Sbjct: 122 DLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAP 181

Query: 228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR 287
            GS IL+H CAHNPTG+DPT + W ++ DVI+ +NHIPF D+AYQGFA+G LD DA   R
Sbjct: 182 EGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPR 241

Query: 288 LFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP 347
                   L+VAQS+SKN GLY  R GA+++  +S++ A R        + SQL  L RP
Sbjct: 242 HLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKR--------LVSQLALLIRP 293

Query: 348 MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF 407
           MY+NPP++GA +V++++ +P L   WK E++ M+ RI  VR++L   L A   S  DWS 
Sbjct: 294 MYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKAC-GSVHDWSH 352

Query: 408 ILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 461
           I RQ+GM ++TGL + Q + + +++H+YMT +GR +++GL+    EY++ AI +
Sbjct: 353 IERQVGMMAYTGLTREQVELLRSEYHIYMTLNGRAAVSGLNSTNVEYVSQAIHN 406

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 Length = 412

 Score =  644 bits (1663), Expect = 0.0
 Identities = 163/415 (39%), Positives = 233/415 (56%), Gaps = 9/415 (2%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-E 115
           + F  + + PPD + G+ + +  D    K++LG+GAYR +  +P+VL  VK AE L+  +
Sbjct: 3   TLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHND 62

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              N EYL I GL +     A+++FG  +  L+E RV +VQ LSGTG+L ++A    ++F
Sbjct: 63  SSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFF 122

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
           P   V +S PTW NH  IF +  +  + Y Y+  +T  LD  G +  I+ AP GS  +LH
Sbjct: 123 PDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLH 182

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR--- 292
            CAHNPTG+DPT EQW +I D I  KNHI  FD AYQGFA+G LD DA +VRL   +   
Sbjct: 183 SCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST 242

Query: 293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNP 352
              + V QS++KN G+Y ER+G  ++  +               V SQL ++ R   SNP
Sbjct: 243 VSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKT----IKPAVTSQLAKIIRSEVSNP 298

Query: 353 PVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQI 412
           P +GA+IVA ++  P L ++W  +M  M+ RI  +R  L D L     +  +W  I+ Q 
Sbjct: 299 PAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKL-GTPGNWDHIVNQC 357

Query: 413 GMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 467
           GMFSFTGL       +     VY+   GR S+AGL+    EY+A AI +     +
Sbjct: 358 GMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDEVVRFYA 412

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* Length = 412

 Score =  642 bits (1658), Expect = 0.0
 Identities = 183/412 (44%), Positives = 251/412 (60%), Gaps = 16/412 (3%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F  V  A P  +  +   F+ D D +K+NLGVGAYRT++ QP+VL VV+K E  +   
Sbjct: 4   SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN 63

Query: 117 GE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              N EYLPI GLA F    + L  G D+  L+E+RV  VQ L GTG+LR+ A  + R++
Sbjct: 64  SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 123

Query: 176 -----PGAKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
                    V +SSPTW NH  +F  A       YRY+D +  GLD +G ++D++ AP  
Sbjct: 124 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 183

Query: 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289
           S  +LH CAHNPTG DPTPEQW++IA V++ +   PFFD AYQGFASG+L+ DA ++R F
Sbjct: 184 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243

Query: 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMY 349
            + G EL  AQS+SKN GLY ER+G + VV    D   R        V SQ++++ R  +
Sbjct: 244 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILR--------VLSQMQKIVRVTW 295

Query: 350 SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL 409
           SNPP  GARIVA  + +P LF EW   ++ MA RI ++R +L   L A  K+   W+ I 
Sbjct: 296 SNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEAL-KTPGTWNHIT 354

Query: 410 RQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 461
            QIGMFSFTGLN  Q + + N+ H+Y+   GRI++ GL+    +Y+A +I +
Sbjct: 355 DQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSIHE 406

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} Length = 448

 Score =  638 bits (1648), Expect = 0.0
 Identities = 169/427 (39%), Positives = 245/427 (57%), Gaps = 12/427 (2%)

Query: 47  RVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVV 106
                   ++S F G   +PPD IL ++  + ADT+ KK+NLGVGAYR E  +P++L  V
Sbjct: 13  EAQTQGPGSMSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAV 72

Query: 107 KKAENLMLE--RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL 164
           K+AE ++       NKEY P+ G   F +    L+FG D+   +E R+A+ Q LSGTGSL
Sbjct: 73  KEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSL 132

Query: 165 RLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPKT-VGLDFEGM 219
            +    +  + P A+  + S TW NH  I    FN  +VP+ EY Y      + +DF   
Sbjct: 133 HIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNT 192

Query: 220 IADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL 279
             DI++AP  S  L H CAHNP+GID T  QW+++  +++EK HI FFD AYQGFA+GS 
Sbjct: 193 KKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSF 252

Query: 280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKS 339
           + DA +VR+F   G+E+LVAQS+SKN GLY ERIG ++VV +  + +    +     + S
Sbjct: 253 EADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVS 312

Query: 340 QLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 399
            +    R  +S   +HGA IV  +V +  L   +   ++ M+ RI  +R  L  SL+ + 
Sbjct: 313 GMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRK 372

Query: 400 ----KSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTK-DGRISLAGLSLAKCEY 454
                S   W  IL  IGMF+FTGL     D +  KW +Y+ K  GR+S+ GL+ + C+Y
Sbjct: 373 TPGPGSKGTWDHILTAIGMFTFTGLTPEHVDYLKEKWSIYLVKAGGRMSMCGLTESNCDY 432

Query: 455 LADAIID 461
           +A+AI D
Sbjct: 433 VAEAIHD 439

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418

 Score =  569 bits (1468), Expect = 0.0
 Identities = 90/434 (20%), Positives = 162/434 (37%), Gaps = 38/434 (8%)

Query: 52  AAVNVSRFEGVTMAPPDPILGVSEAFKA----DTDEKKLNLGVGAYRTEELQPYVLDVVK 107
           A  +V+          D I   +   +A    +  E  +N  +GA   EE     L  VK
Sbjct: 3   AMTSVAAKHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVK 62

Query: 108 KAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLA 167
           +    + +  E+  Y PI G+  F     +  FG       E  + ++    GTG +   
Sbjct: 63  EEYLSLSDS-EHVGYAPIAGIPDFLCAAEKECFGNFR---PEGHIRSIATAGGTGGIHHL 118

Query: 168 AALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKT--VGLDFEGMIADIKA 225
                   PG +VL +   WG ++ I +D       Y  +D         F+  + ++ A
Sbjct: 119 IHNYTE--PGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAA 176

Query: 226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE------KNHIPFFDVAYQGFASGSL 279
                 ++ +   +NPTG     + W+ I + +++       N I   DVAY  ++    
Sbjct: 177 KQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGE-K 235

Query: 280 DNDASSVRLFATRGMELL--VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQV 337
           D   +    F+    E+L  V  S SK   +Y +R+GAM  +    ++A           
Sbjct: 236 DEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADE--------F 287

Query: 338 KSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA 397
               K  +R  +SN      R +AN+V +PA F E++AE       I++         + 
Sbjct: 288 FEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQ 347

Query: 398 KDKSGKDWSFILRQIGMFSFTGLNKAQSD-NMTNKWH---VYMTKDGRISLAGLSLAKCE 453
                     +  + G F     + A +      K H   + +    RI+  G+   +  
Sbjct: 348 -----VGLPMLPYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAACGIPKCQMT 402

Query: 454 YLADAIIDSYHNVS 467
            LA+ I ++  ++ 
Sbjct: 403 GLAEKIYNAMKSLG 416

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430

 Score =  424 bits (1093), Expect = e-146
 Identities = 67/416 (16%), Positives = 143/416 (34%), Gaps = 39/416 (9%)

Query: 61  GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK 120
           G  M  P  IL    +  A+      N  +G    ++        +    N  L   E  
Sbjct: 29  GQNMFYPKGIL----SQSAEAKSTTYNATIGMATNKD-GKMFASSLDAMFND-LTPDEIF 82

Query: 121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180
            Y P +G+     +  + +   +  +  +     +   + T  L L   L         +
Sbjct: 83  PYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVN--QDDTI 140

Query: 181 LISSPTWGNHKNIFNDAR-VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239
           L+    WGN+K +FN         Y  +D        + ++  +++      I++    +
Sbjct: 141 LLPEHNWGNYKLVFNTRNGANLQTYPIFDKDG-HYTTDSLVEALQSYNKDKVIMILNYPN 199

Query: 240 NPTGIDPTPEQWEKIADVIQE-----KNHIPFFDVAYQGFASGSLDND--ASSVRLFATR 292
           NPTG  PT ++   I + I+         I   D AY G     +      +++    + 
Sbjct: 200 NPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSN 259

Query: 293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNP 352
            +  +     +K    +  R+G M    S               +++++K L R   S+ 
Sbjct: 260 AILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEV--------LEAKVKGLIRSNISSG 311

Query: 353 PVHGARIVANVVGNPALFD-EWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ 411
           P+     V +V+ N   FD E +  ++ +  R +  ++ ++            W      
Sbjct: 312 PLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYH-----SHWQAYDFN 366

Query: 412 IGMFSFTGLNKAQSDNMT----NKWHVYM----TKDGRISLAGLSLAKCEYLADAI 459
            G F    ++    + +     +K+ + +      D RI+ + +      ++ D+I
Sbjct: 367 SGYFMAIKVHDVDPEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDDIPHVFDSI 422

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.2 bits (176), Expect = 2e-13
 Identities = 61/446 (13%), Positives = 125/446 (28%), Gaps = 129/446 (28%)

Query: 75  EAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKV 134
           + F  +         +   +TE+ QP            M     ++ Y   +  A +N V
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQP-------SMMTRMYIEQRDRLYNDNQVFAKYN-V 131

Query: 135 TAELLFGADNSVLKEQRVA---TVQGLSGTGSLRLAAAL-----IERYFPGAKVLISSPT 186
           +    +      L E R A    + G+ G+G   +A  +     ++              
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF--------- 182

Query: 187 WGNHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGID 245
                 IF      W   +  + P+TV    + ++  I               H+     
Sbjct: 183 -----KIF------WLNLKNCNSPETVLEMLQKLLYQIDPN------WTSRSDHSSNIKL 225

Query: 246 PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN--DASSVRLFA--------TRGME 295
                  ++  +++ K +     V         L N  +A +   F         TR  +
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLV---------LLNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 296 L---LVAQSYSK------NLGLY---AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKR 343
           +   L A + +       ++ L     + +    + C   DL                  
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---------- 326

Query: 344 LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG- 402
                    P   + I  ++    A +D WK    +   ++  + +   + L   +    
Sbjct: 327 ---------PRRLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 403 --------KD-----------WSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRIS 443
                                W  +++   M     +NK    ++  K      K+  IS
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV---VNKLHKYSLVEKQ----PKESTIS 427

Query: 444 LAGLSL---AKCEYLAD---AIIDSY 463
           +  + L    K E       +I+D Y
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHY 453

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 38/203 (18%), Positives = 72/203 (35%), Gaps = 14/203 (6%)

Query: 73  VSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFN 132
                + + D K ++LG+G   TE L  Y+ D + KA   +  R     Y   +G  A  
Sbjct: 59  RKAHQEKNPDAKIISLGIGD-TTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALR 117

Query: 133 KVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK- 191
           +  A   +G       E  +    G S     R+             V +  P++  +  
Sbjct: 118 EAVASTFYGHAGRAADE--IFISDG-SKCDIARIQMMFG----SKPTVAVQDPSYPVYVD 170

Query: 192 -NIFNDARVPWSEYRYYDPKTVGLDFE-GMIADIKAAPGGSFILLHGCA-HNPTGIDPTP 248
            ++        +   +   + +  + +     D+  A     I    C+ +NPTG   T 
Sbjct: 171 TSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDIIFF--CSPNNPTGAAATR 228

Query: 249 EQWEKIADVIQEKNHIPFFDVAY 271
            Q  ++ +  ++   I  +D AY
Sbjct: 229 AQLTELVNFARKNGSILVYDAAY 251

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 27/170 (15%)

Query: 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG--FASGSLDNDASSVRLFA---TRGM 294
           NPTG     E    I    + +  +   D  YQ   +      +    +          +
Sbjct: 248 NPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDL 307

Query: 295 ELLVAQSYSKNLGLYAE---RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSN 351
            L+  QS SK  G Y E   R G                      V+ Q+ ++A  +   
Sbjct: 308 PLVSYQSVSK--GYYGECGKRGGYF------------EITGFSAPVREQIYKIAS-VNLC 352

Query: 352 PPVHGARIVANVVGNPALFDE----WKAEMEMMAGRIKNVRQKLFDSLSA 397
             + G  + + V+  P   DE    +KAE + +   +    + L  + + 
Sbjct: 353 SNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNK 402

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 33/193 (17%), Positives = 59/193 (30%), Gaps = 53/193 (27%)

Query: 142 ADNSVLKEQRVATVQGLS------GTGS---LRLAA-ALIERYFPGAKVLISSPTWGNHK 191
           A +  L+ +    + G          GS   L     A       G ++    P+     
Sbjct: 65  ASSQKLR-EVAGELYGFDPSWIIMANGSDEVLNNLIRAFAA---EGEEIGYVHPS----- 115

Query: 192 NIFNDARVPWSEYRYY------DPKTVGL--DFEGMIADIKAAPGGSFILLHGCA--HNP 241
             +       S Y           +T GL  DF       +      F+        + P
Sbjct: 116 --Y-------SYYGTLAEVQGARVRTFGLTGDFRIAGFPERYEGKVFFL-----TTPNAP 161

Query: 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS 301
            G     E  +++A        +   D  Y  FA      +++++ L       ++V ++
Sbjct: 162 LGPSFPLEYIDELARRCAG---MLVLDETYAEFA------ESNALELVRRHE-NVVVTRT 211

Query: 302 YSKNLGLYAERIG 314
            SK+  L   RIG
Sbjct: 212 LSKSYSLAGMRIG 224

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 37/172 (21%), Positives = 59/172 (34%), Gaps = 30/172 (17%)

Query: 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ------GFASGSLDNDASSVRLFATRG 293
           NPTG   + +  E +     E+      D  YQ           S       +    +  
Sbjct: 246 NPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSN 305

Query: 294 MELLVAQSYSKNLGLYAE---RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYS 350
           +EL    S SK  G   E   R G M V+    +            +K QL +L      
Sbjct: 306 VELASFHSTSK--GYMGECGYRGGYMEVINLHPE------------IKGQLVKLLSVRLC 351

Query: 351 NPPVHGARIVANVVGNPAL-----FDEWKAEMEMMAGRIKNVRQKLFDSLSA 397
            PPV G +   ++V NP +     F+++  E E + G +    +   D  + 
Sbjct: 352 -PPVSG-QAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ 401

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 13/160 (8%)

Query: 170 LIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
            +       + +I +P +  +      +      +            + ++  +      
Sbjct: 91  TVASGLKPRRAMIVTPGFAEYGRALAQSGCEIRRW-SLREADGWQLTDAILEALTPDLDC 149

Query: 230 SFILLHGCA-HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL 288
            F+    C  +NPTG+ P     + IAD  +  N     D A+  F      ++   +  
Sbjct: 150 LFL----CTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFI----PHETGFIPA 201

Query: 289 FATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR 328
                  + V +S +K   +   R+G +  V S     AR
Sbjct: 202 LKDNP-HIWVLRSLTKFYAIPGLRLGYL--VNSDDAAMAR 238

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 41/223 (18%), Positives = 69/223 (30%), Gaps = 33/223 (14%)

Query: 124 PIEGLAAFNKVTAELL-FGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF--PGAKV 180
            + GL +   + A  L   A+N ++       +QGL  T +L          +     K+
Sbjct: 68  GVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKM 127

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPK--TVGLDFEGMIAD-----IKAAPGGSFIL 233
           +++ P +  H  +           +    +  TV +  +G   D         P    IL
Sbjct: 128 IVTVPGYDRHFLLL----------QTLGFELLTVDMQSDGPDVDAVERLAGTDPSVKGIL 177

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF-DVAYQ--GFASGSLDNDASSVRLFA 290
                 NP G   + E+  ++A +         F D AY+             + V L  
Sbjct: 178 FVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLAR 237

Query: 291 TRGMELLVAQ--SYSKNL--GLYAERIGAMNVVCSSSDLAARC 329
             G         S SK    G     +G +    SS D     
Sbjct: 238 DAGYPDRAFVFASTSKITFAGA---GLGFV---ASSEDNIRWL 274

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 32/236 (13%), Positives = 69/236 (29%), Gaps = 59/236 (25%)

Query: 170 LIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY------DPKTVGLDFEGMIADI 223
            I + F G++ LI+ P+       F       +EY         +      + E +    
Sbjct: 82  QIAQAFRGSRSLIAIPS-------F-------AEYEDACRMYEHEVCFYPSN-EDIGEAD 126

Query: 224 KAAPGGSFILLHGCA-HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDND 282
            +     ++    C  +NP G      +  ++ +     +     D +Y  F       +
Sbjct: 127 FSNMDFCWL----CNPNNPDGRLLQRTEILRLLN--DHPDTTFVLDQSYVSFT----TEE 176

Query: 283 ASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLK 342
                    R   L++  S+S   G+   RIG    + ++ D   R            + 
Sbjct: 177 VIRPADIKGRK-NLVMVYSFSHAYGIPGLRIGY---IVANKDFMKR------------VA 220

Query: 343 RLARPMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA 397
                 ++ N        +A       L     A+  +   + +        +L+ 
Sbjct: 221 A-FSTPWAVN-------ALAIEAAKFILIHP--AQFTLPIRKWQRNTVDFITALNR 266

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 27/163 (16%)

Query: 160 GTGSLRLAAALIERYF-PGAKVLISSPTWGNHKNI--FNDAR---VPWSEYRYYDPKTVG 213
             GS  +   L++ +  PG   L   P++  H  +          V        D     
Sbjct: 98  ANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRGA----DF---R 150

Query: 214 LDFEGMIADIKA-APGGSFILLHGCA-HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY 271
           +D +  + +I+A  P   F+       +NPTG   + +  E+I +V      I   D AY
Sbjct: 151 IDMDVALEEIRAKQPDIVFV----TTPNNPTGDVTSLDDVERIINVAPG---IVIVDEAY 203

Query: 272 QGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG 314
             F+        S+  L      +L+V+++ SK       R+G
Sbjct: 204 AEFSP-----SPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLG 241

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 33/230 (14%), Positives = 60/230 (26%), Gaps = 44/230 (19%)

Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF------ 175
           Y  + G+A   ++ AE L      +  +  VA            ++ +            
Sbjct: 72  YGGLLGIADIRELWAEAL-----GLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPW 126

Query: 176 ---PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK--TVGLDFEGMIAD----IKAA 226
                 K L   P +  H  I            ++  +   V +  EG        +   
Sbjct: 127 SAEEKVKWLCPVPGYDRHFTIT----------EHFGFEMINVPMTDEGPDMGVVRELVKD 176

Query: 227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF-DVAYQ--GFASGSLDNDA 283
           P    +       NPTG+  + +   ++A++           D AY      S       
Sbjct: 177 PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTL-SDEFPIVH 235

Query: 284 SSVRLFATRGMELLVAQ--SYSKNL--GLYAERIGAMNVVCSSSDLAARC 329
           + +      G         S SK    G     +       SS +     
Sbjct: 236 NVIEFAQAAGNPNRFWFMSSTSKITHAGS---GVSFF---ASSKENIEWY 279

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 38/163 (23%)

Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYY------DPKTV------GLDFEGMIADIKAA 226
           K+LI  P+       +       +EY                     +D+E +I      
Sbjct: 100 KILIIVPS-------Y-------AEYEINAKKHGVSVVFSYLDENMCIDYEDII---SKI 142

Query: 227 PGGSFILLHGCA-HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS 285
                +++     +NP G     E++  +  + +EK      D A+  F     D  +S 
Sbjct: 143 DDVDSVII--GNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTG---DPSSSF 197

Query: 286 VRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR 328
           V         L + ++ +K   +   R G    + ++ ++AA+
Sbjct: 198 VGEIKNYS-CLFIIRAMTKFFAMPGIRFGYG--ITNNKEIAAK 237

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	467
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	100.0
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	100.0
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	100.0
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	100.0
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	100.0
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	100.0
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	100.0
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	100.0
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	100.0
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	100.0
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	100.0
3rq1_A	418	Aminotransferase class I and II; structural genomi	100.0
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	100.0
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	100.0
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	100.0
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	100.0
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	100.0
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	100.0
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	100.0
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	100.0
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	100.0
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	100.0
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	100.0
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	100.0
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	100.0
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	100.0
3ele_A	398	Amino transferase; RER070207001803, structural gen	100.0
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	100.0
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	100.0
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	100.0
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	100.0
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	100.0
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	100.0
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	100.0
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	100.0
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	100.0
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	100.0
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	100.0
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	100.0
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	100.0
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	100.0
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	100.0
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	100.0
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	100.0
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	100.0
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	100.0
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	100.0
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	100.0
1vp4_A	425	Aminotransferase, putative; structural genomics, j	100.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	100.0
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	100.0
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	100.0
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	100.0
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	100.0
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	100.0
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	100.0
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	100.0
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	100.0
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	100.0
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	100.0
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	100.0
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	100.0
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	100.0
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	100.0
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	100.0
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	100.0
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	100.0
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	100.0
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	100.0
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	100.0
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	100.0
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	100.0
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	100.0
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	100.0
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	100.0
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	100.0
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	100.0
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	100.0
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	100.0
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	100.0
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	100.0
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	100.0
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.97
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.97
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.97
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.97
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.97
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.97
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.97
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.97
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.97
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.97
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.97
1svv_A	359	Threonine aldolase; structural genomics, structura	99.97
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.97
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.97
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.96
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.96
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.96
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.96
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.96
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.96
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.96
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.96
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.96
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.96
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.96
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.96
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.96
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.96
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.96
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.96
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.96
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.96
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.96
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.96
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.96
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.96
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.96
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.95
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.95
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.95
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.95
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.95
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.95
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.95
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.95
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.95
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.95
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.95
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.95
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.95
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.95
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.95
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.95
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.95
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.95
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.95
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.95
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.94
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.94
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.94
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.94
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.94
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.94
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.94
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.94
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.94
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.94
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.94
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.94
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.94
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.94
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.94
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.94
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.94
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.94
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.93
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.93
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.93
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.93
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.93
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.93
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.93
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.93
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.93
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.93
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.93
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.93
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.93
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.93
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.92
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.92
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.92
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.92
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.92
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.92
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.92
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.92
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.92
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.92
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.92
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.92
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.92
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.91
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.91
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.91
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.91
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.91
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.91
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.91
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.91
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.91
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.9
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.9
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.89
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.89
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.89
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.88
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.88
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.88
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.88
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.88
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.88
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.88
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.87
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.87
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.79
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.87
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.86
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.86
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.86
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.86
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.86
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.85
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.85
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.85
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.84
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.83
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.83
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.82
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.81
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.79
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.76
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.73
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.73
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.72
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.7
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.68
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.54
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.49
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.43
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.4
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.37
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.34
3gh5_A	525	HEX1, beta-hexosaminidase; beta-N-acetylhexosamini	81.72

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=100.00  E-value=8.1e-67  Score=525.36  Aligned_cols=397  Identities=44%  Similarity=0.759  Sum_probs=354.5

Q ss_pred             ccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHH
Q 012238           57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA  136 (467)
Q Consensus        57 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia  136 (467)
                      ++|+.|+..|+++|+++.+++++++++ +|||++|.|+|+++.|++++.|++|...+++.+..+.|.|..|+++||++++
T Consensus        19 ~~~~~v~~~p~d~i~~l~~~~~~d~~~-kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia   97 (420)
T 4h51_A           19 ERWQKIQAQAPDVIFDLAKRAAAAKGP-KANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAV   97 (420)
T ss_dssp             HHHHTCCCCCCCHHHHHHHHHHHCCSS-CEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHH
T ss_pred             HHHhCCCCCCCChHHHHHHHHhcCCCC-CEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHH
Confidence            689999999999999999999988875 9999999999999999989999999998887777678999999999999999


Q ss_pred             HHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh--CCCCEEEEcCCCCcchHHHHhhCCCCe-EEeeeecCCCCC
Q 012238          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--FPGAKVLISSPTWGNHKNIFNDARVPW-SEYRYYDPKTVG  213 (467)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~--~~gd~Vlv~~P~y~~~~~~~~~~G~~~-~~v~~~~~~~~~  213 (467)
                      +++++..   ...+++..+||.|||+|+..++.++...  .|||+|++++|+|++|..+++..|++. ..+++.+++++.
T Consensus        98 ~~~~g~~---~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~  174 (420)
T 4h51_A           98 KIIYGNT---VELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVS  174 (420)
T ss_dssp             HHHHC------CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTE
T ss_pred             HHhcCCC---ccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeeccccccccC
Confidence            9987653   2356788888999999999886665433  499999999999999999999999974 456776677788


Q ss_pred             CChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012238          214 LDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (467)
Q Consensus       214 ~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (467)
                      +|++.+.+.++..+++++++++++||||||.+++.++|++|+++|+++++++|+||+|++|.+++.+.+.+.++.+.+..
T Consensus       175 ~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~  254 (420)
T 4h51_A          175 LNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRG  254 (420)
T ss_dssp             ECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTT
T ss_pred             CCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhC
Confidence            99999999998888899999999999999999999999999999999999999999999999976444555666677778


Q ss_pred             CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHH
Q 012238          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEW  373 (467)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~  373 (467)
                      +++++++||||+|+++|||+||+++++...+...+        +.+++....+..++++|.++|.++..+|+++.+..+|
T Consensus       255 ~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~--------~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~  326 (420)
T 4h51_A          255 IEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRAD--------VKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEW  326 (420)
T ss_dssp             CCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHH--------HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHH
T ss_pred             ceEEEEeccccccccccCceEEEEecccCHHHHHH--------HHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHH
Confidence            89999999999999999999999877777776666        7788888888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHH
Q 012238          374 KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCE  453 (467)
Q Consensus       374 ~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~  453 (467)
                      +++++.++++++++|+.|.+.|+ ++|.+++|.++.+++|||+|++++.++++.| +++||+++++||||++++++++++
T Consensus       327 ~~~~~~m~~r~~~~R~~l~~~L~-~~g~~~~~~~i~~q~GmF~~~gls~e~v~~L-~e~~Vy~~~~gRis~Agl~~~ni~  404 (420)
T 4h51_A          327 EAELSAMAERIRTMRRTVYDELL-RLQTPGSWEHVINQIGMFSFLGLSKAQCEYC-QNHNIFITVSGRANMAGLTHETAL  404 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HTTCSSCCTHHHHCCSSEEECCCCHHHHHHH-HHTTEECCTTCEEEGGGCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCCCeecCCCceEEecCcCHHHHHHH-HhCCEEEcCCCEEEeccCCHHHHH
Confidence            99999999999999999999999 9988888999999999999999999998754 668999999999999999999999


Q ss_pred             HHHHHHHHHHHhcC
Q 012238          454 YLADAIIDSYHNVS  467 (467)
Q Consensus       454 ~~~~~l~~~l~~~~  467 (467)
                      +++++|.+++++++
T Consensus       405 ~~a~aI~~vvr~i~  418 (420)
T 4h51_A          405 MLAQTINDAVRNVN  418 (420)
T ss_dssp             HHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998764

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=100.00  E-value=2e-62  Score=493.23  Aligned_cols=398  Identities=27%  Similarity=0.526  Sum_probs=339.6

Q ss_pred             ccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHH-hcCCCCcCCCCcchHHHHHHH
Q 012238           57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-ERGENKEYLPIEGLAAFNKVT  135 (467)
Q Consensus        57 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~-~~~~~~~Y~~~~G~~~lr~ai  135 (467)
                      |+|++++..++++++++.+.++++..+++|||++|.|+|+++.+++++.++++.. ++ +.+..++|.|..|.++||+++
T Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~ai   81 (405)
T 3k7y_A            3 KLLSSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLT   81 (405)
T ss_dssp             CGGGGCCCCCCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHH
T ss_pred             chhhcCCCCCCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHH
Confidence            5789999999999999999999887789999999998888776666899999987 54 344458899999999999999


Q ss_pred             HHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCC
Q 012238          136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (467)
Q Consensus       136 a~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  215 (467)
                      ++++.+.++..++++++.+++|.|+++|++++.+++..+.| |+|++++|+|+.|..+++.+|++++.+|+.+++++++|
T Consensus        82 a~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d  160 (405)
T 3k7y_A           82 QNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDIN  160 (405)
T ss_dssp             HHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEEC
T ss_pred             HHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcC
Confidence            99998877777777765333499999999998555433348 99999999999999999999999999998656678999


Q ss_pred             hhhHHHHHHcCCCCcEEEEeCC-CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012238          216 FEGMIADIKAAPGGSFILLHGC-AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (467)
Q Consensus       216 ~~~l~~~l~~~~~~~~~i~i~~-p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~  294 (467)
                      ++.+++.+++.+ +++++++++ ||||||.+++.+++++|+++|++||++||+||+|.++.+++.+.+..+++.+....+
T Consensus       161 ~~~l~~~l~~~~-~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~  239 (405)
T 3k7y_A          161 YDLFLNDLRNIP-NGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNI  239 (405)
T ss_dssp             HHHHHHHHHHSC-SSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTC
T ss_pred             HHHHHHHHHhCC-CCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCC
Confidence            999999997532 344555554 599999999999999999999999999999999999998643334445656666668


Q ss_pred             eEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHH
Q 012238          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWK  374 (467)
Q Consensus       295 ~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~  374 (467)
                      ++|+++||||+|+++|||+||+++++++++++++        +..+++...+..+++++.++|.++..+|.++.+.++|.
T Consensus       240 ~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~  311 (405)
T 3k7y_A          240 AFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKI--------VFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWI  311 (405)
T ss_dssp             CEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHH--------HHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cEEEEeeCCccCCCccccceEEEEEeCCHHHHHH--------HHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999999999755678888877        76667776666677888999999999999988888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh---ccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhh
Q 012238          375 AEMEMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAK  451 (467)
Q Consensus       375 ~~l~~~~~~~~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~  451 (467)
                      ++++.++++|+++|+.+.+.|++   ++|.++.|++.+|+||||+|++++.++++++ +++||++.|+||||++++++++
T Consensus       312 ~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~~~~~~L-~~~gV~v~p~~Ris~a~~~~~~  390 (405)
T 3k7y_A          312 KELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLAKIAEHL-KTHHIYIINNGRINVSGITKNN  390 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGGGGTTTT-TTTTEECCTTSEEEGGGCCTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCHHHHHHH-HHCCEeecCCCeEEEeccCHHH
Confidence            99999999999999999999973   4566666899999999999999887888777 8889999999999999888999


Q ss_pred             HHHHHHHHHHHHHhc
Q 012238          452 CEYLADAIIDSYHNV  466 (467)
Q Consensus       452 i~~~~~~l~~~l~~~  466 (467)
                      +++++++|+++++.+
T Consensus       391 i~~~~~~i~~~~~~~  405 (405)
T 3k7y_A          391 VDYIADKICLSLSQI  405 (405)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhhC
Confidence            999999999998753

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=100.00  E-value=5.4e-57  Score=461.31  Aligned_cols=402  Identities=42%  Similarity=0.765  Sum_probs=350.1

Q ss_pred             cccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHH--hcCCCCcCCCCcchHHHHH
Q 012238           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML--ERGENKEYLPIEGLAAFNK  133 (467)
Q Consensus        56 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~--~~~~~~~Y~~~~G~~~lr~  133 (467)
                      ||.|++++..++++|+.+.+++++++++.+|||++|.|+|.++.+++.+.+++++.+..  .......|.+..|.+++|+
T Consensus        22 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~  101 (448)
T 3meb_A           22 MSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLE  101 (448)
T ss_dssp             CCTTTTCCCCCCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHH
T ss_pred             hhHHhcCCCCCCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHH
Confidence            57899999999999999999999888888999999999998888888899999987776  2233578999999999999


Q ss_pred             HHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCCCeEEeeeecC
Q 012238          134 VTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDP  209 (467)
Q Consensus       134 aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~~~~v~~~~~  209 (467)
                      ++++++.+.....+++++|+++||+||++|+++++.++..+.+||+|++++|+|..|...++    ..|++++.+|+.++
T Consensus       102 ~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~  181 (448)
T 3meb_A          102 AAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRK  181 (448)
T ss_dssp             HHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCT
T ss_pred             HHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEecccc
Confidence            99999866544445578999999999999999975567778899999999999999999999    99999999998655


Q ss_pred             C-CCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012238          210 K-TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (467)
Q Consensus       210 ~-~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~  288 (467)
                      + ++++|++.+++.+++.+.+++++++++||||||.+++.++|++|+++|++||+++|+||+|+++.+++.+.+.+++..
T Consensus       182 ~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~  261 (448)
T 3meb_A          182 DGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRM  261 (448)
T ss_dssp             TSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHH
T ss_pred             ccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHH
Confidence            5 689999999999986555788999999999999999999999999999999999999999999998642223456666


Q ss_pred             HHhcCCeEEEEecCccCcccCCCccceEEEec--------CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHH
Q 012238          289 FATRGMELLVAQSYSKNLGLYAERIGAMNVVC--------SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV  360 (467)
Q Consensus       289 ~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  360 (467)
                      +...++++++++||||+||++|+|+||+.+++        ++++.++.        +..++....+..+.+++.++|.++
T Consensus       262 ~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~--------l~~~l~~~~~~~~~~~~~~~~~a~  333 (448)
T 3meb_A          262 FVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAA--------MVSGMTLQIRKTWSMSAIHGAYIV  333 (448)
T ss_dssp             HHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHH--------HHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred             HhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHH--------HHHHHHHHHhcccCCccHHHHHHH
Confidence            66677899999999999999999999985445        45645545        555577767777888999999999


Q ss_pred             HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-----CcccccCCcceEEecCCCHHHHHHHHHcccEE
Q 012238          361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK-----DWSFILRQIGMFSFTGLNKAQSDNMTNKWHVY  435 (467)
Q Consensus       361 ~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~-----~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~  435 (467)
                      ..+|.++.+.++|.+++++++++++++|+.+.+.|+ ++++++     .|.+..+++|+|+|.+++.+++..+++++||+
T Consensus       334 ~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gV~  412 (448)
T 3meb_A          334 QVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLA-KRKTPGPGSKGTWDHILTAIGMFTFTGLTPEHVDYLKEKWSIY  412 (448)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCCCSTTTCCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEE
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCcCcccccceeCCCceEEEecCCCHHHHHHHHHhCCEE
Confidence            999999988889988899999999999999999999 887665     47888899999999999999999998889999


Q ss_pred             EeCC-CeEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          436 MTKD-GRISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       436 v~~g-gRis~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +.|| ||||++.++++++++++++|+++++++
T Consensus       413 v~~G~gRis~a~~~~~~i~~~~~~l~~~l~~~  444 (448)
T 3meb_A          413 LVKAGGRMSMCGLTESNCDYVAEAIHDAVTKL  444 (448)
T ss_dssp             ECSGGGEEEGGGCCTTTHHHHHHHHHHHHHHS
T ss_pred             EeCCCcEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence            9996 699999888899999999999998764

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=100.00  E-value=2.8e-56  Score=449.37  Aligned_cols=399  Identities=50%  Similarity=0.899  Sum_probs=345.0

Q ss_pred             ccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHH
Q 012238           57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA  136 (467)
Q Consensus        57 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia  136 (467)
                      |.|+.++..++++++.+.+.++.+.++++|||++|.|+|..+.|++.+.+++++.+.........|.+..|.+++|++++
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia   81 (401)
T 7aat_A            2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASA   81 (401)
T ss_dssp             CSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHH
T ss_pred             ChhhcCCCCCCChhHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHH
Confidence            67889999999999999999998887889999999998888877778899999988775434578999899999999999


Q ss_pred             HHHhCCCCcccccCceeeeecCCchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCC
Q 012238          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (467)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~-~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  215 (467)
                      +++...+|..+++++|++++|+||+++++++...+. .+.|||+|++++|+|..|...++..|++++.+|+++++++++|
T Consensus        82 ~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  161 (401)
T 7aat_A           82 ELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLD  161 (401)
T ss_dssp             HHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEEC
T ss_pred             HHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccC
Confidence            999988888888999977779999999999754433 2368999999999999999999999999999998766678999


Q ss_pred             hhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012238          216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (467)
Q Consensus       216 ~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~  295 (467)
                      ++.+++.+++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++.+.+..++..+....++
T Consensus       162 ~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~  241 (401)
T 7aat_A          162 FTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID  241 (401)
T ss_dssp             HHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCc
Confidence            99999988765567899999999999999999999999999999999999999999999876321123445455566789


Q ss_pred             EEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH
Q 012238          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA  375 (467)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  375 (467)
                      +++++||||.||++|+|+||++++.++++..+.        +..++....+..+.+++..+|.++..+++++.+.+.|.+
T Consensus       242 ~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  313 (401)
T 7aat_A          242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKR--------VESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLV  313 (401)
T ss_dssp             CEEEEECTTTSCCGGGCEEEEEEECSSHHHHHH--------HHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             EEEEecCCcccccccCceEEEEEEeCCHHHHHH--------HHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHH
Confidence            999999999999999999999755567776555        555566666666778888899999889998888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHHHH
Q 012238          376 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYL  455 (467)
Q Consensus       376 ~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~~~  455 (467)
                      ++++++++++++|+++.+.|+ +++.+..+.+..|++|+|+|.+++.+++..+++++||++.+++|||++..++++++++
T Consensus       314 ~~~~~~~~~~~~r~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~~~Ris~~~~~~~~i~~~  392 (401)
T 7aat_A          314 EVKGMADRIISMRTQLVSNLK-KEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYL  392 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HTTCCSCCHHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hcCCCCCCceecCCcceEEecCCCHHHHHHHHHhCCEeccCCCeEEeccCChhhHHHH
Confidence            899999999999999999999 8875555788889999999999999889888888899999999999998888889999


Q ss_pred             HHHHHHHHH
Q 012238          456 ADAIIDSYH  464 (467)
Q Consensus       456 ~~~l~~~l~  464 (467)
                      +++|+++++
T Consensus       393 ~~~l~~~~~  401 (401)
T 7aat_A          393 AHAIHQVTK  401 (401)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999998863

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=100.00  E-value=8.8e-56  Score=448.72  Aligned_cols=397  Identities=42%  Similarity=0.755  Sum_probs=345.1

Q ss_pred             cccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHH
Q 012238           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVT  135 (467)
Q Consensus        56 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~ai  135 (467)
                      ||.++++...++++++++.+.++.+..+++|||++|.|+|+++.+++++.+++++.+.+.......|.+..|.+++|+++
T Consensus        22 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~i  101 (420)
T 4f4e_A           22 MSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASV  101 (420)
T ss_dssp             CCTTTTCCCCCCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHH
T ss_pred             cCHhhcCCcCCCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHH
Confidence            46889999999999999999998777789999999988777777766799999999988765557899999999999999


Q ss_pred             HHHHhCCCCcccccC--ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCC
Q 012238          136 AELLFGADNSVLKEQ--RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVG  213 (467)
Q Consensus       136 a~~l~~~~~~~~~~~--~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~  213 (467)
                      ++++.+..+..++++  +|++  |+||++++.+++.++..+.+||+|++++|+|..|...++..|++++.+|+.++++++
T Consensus       102 a~~l~~~~~~~~~~~~~~i~~--t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~  179 (420)
T 4f4e_A          102 QKLLLGDDSPLIAAGRVVTAQ--ALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNG  179 (420)
T ss_dssp             HHHHHCTTCHHHHTTCEEEEE--EEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTE
T ss_pred             HHHhcCCCccccccCceEEEE--CCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCc
Confidence            999988777666788  8888  999999999986666678899999999999999999999999999999986566788


Q ss_pred             CChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012238          214 LDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (467)
Q Consensus       214 ~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (467)
                      +|++.+++.+++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++. +.+..++..+....
T Consensus       180 ~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~-~~~~~~~~~~~~~~  258 (420)
T 4f4e_A          180 VNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESI-EADAAAVRLFAAAN  258 (420)
T ss_dssp             ECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCT-TGGGHHHHHHHHTT
T ss_pred             cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCc-chhhHHHHHHHhcC
Confidence            99999999998655678999999999999999999999999999999999999999999999862 22345565665667


Q ss_pred             CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHH
Q 012238          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEW  373 (467)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~  373 (467)
                      +++++++||||.|+++|+|+||+++++++++.++.        +..+++...+..+.+++.++|.++..+|.+..+.++|
T Consensus       259 ~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~  330 (420)
T 4f4e_A          259 LNVFVSSSFSKSFSLYGERVGALSIITDSKDEAAR--------VLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASW  330 (420)
T ss_dssp             CCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHH--------HHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHH
T ss_pred             CCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHH--------HHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHH
Confidence            89999999999999999999999755667777766        5555666655667788889999999999998888778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHH
Q 012238          374 KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCE  453 (467)
Q Consensus       374 ~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~  453 (467)
                      .+++++++++++++|+.+.+.|+ +++.+.++.+..+++|+|+|++++.+++.++++++||++.++||||++.+++++++
T Consensus       331 ~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~gI~v~~~~Ris~~~~~~~~i~  409 (420)
T 4f4e_A          331 VQELGEMRDRIRAMRNGLVERLK-AAGIERDFSFINAQRGMFSYSGLTSAQVDRLREEFGIYAVSTGRICVAALNTRNLD  409 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HTTCSSCCTHHHHSCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCceeECCCccEEEEeCCCHHHHHHHHHhCCEEecCCCeEEEecCCHHHHH
Confidence            88899999999999999999999 77432237888899999999999988888888888999999999999987889999


Q ss_pred             HHHHHHHHHHH
Q 012238          454 YLADAIIDSYH  464 (467)
Q Consensus       454 ~~~~~l~~~l~  464 (467)
                      +++++|+++++
T Consensus       410 ~~~~~l~~~l~  420 (420)
T 4f4e_A          410 VVANAIAAVLK  420 (420)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998863

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=100.00  E-value=1.8e-54  Score=437.43  Aligned_cols=395  Identities=42%  Similarity=0.774  Sum_probs=321.3

Q ss_pred             cccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHH
Q 012238           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVT  135 (467)
Q Consensus        56 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~ai  135 (467)
                      .|+|++++..++++++++.++++++..+++|||++|.|.|..+.+.+.+.+.++    . ......|.+..|.++||+++
T Consensus        14 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a----~-~~~~~~y~~~~g~~~lr~~i   88 (409)
T 4eu1_A           14 AQTQGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQA----T-LGTNMDYAPVTGIASFVEEA   88 (409)
T ss_dssp             -------------CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTC----C-CCSCCCCCCTTCCHHHHHHH
T ss_pred             hhHhhcCCCCCCChHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhc----C-ccccccCCCCCCcHHHHHHH
Confidence            468899999999999999999998888899999999987766655555555544    2 33347899999999999999


Q ss_pred             HHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCC
Q 012238          136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL  214 (467)
Q Consensus       136 a~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~-~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  214 (467)
                      ++++.+..+..+++++|..++|.||++++.++..++..+ .+||+|++++|+|..|...++..|++++.+++.+++++++
T Consensus        89 a~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~  168 (409)
T 4eu1_A           89 QKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGL  168 (409)
T ss_dssp             HHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEE
T ss_pred             HHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcC
Confidence            999877665556678886556899999999875444433 4899999999999999999999999999999865667899


Q ss_pred             ChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012238          215 DFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (467)
Q Consensus       215 d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~  294 (467)
                      |++.+++.+++.+.+++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++...+..++..+.+..+
T Consensus       169 d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~  248 (409)
T 4eu1_A          169 NLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVP  248 (409)
T ss_dssp             CHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSS
T ss_pred             cHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCC
Confidence            99999999976445678888899999999999999999999999999999999999999987631112344555555667


Q ss_pred             eEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHH
Q 012238          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWK  374 (467)
Q Consensus       295 ~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~  374 (467)
                      ++++++||||+||++|+|+||+.+++++++.++.        +..+++...+..+.+++.+.|.++..+|.+..+.++|.
T Consensus       249 ~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  320 (409)
T 4eu1_A          249 NLIVAQSFSKNFGLYGHRCGALHISTASAEEAKR--------LVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWK  320 (409)
T ss_dssp             CCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHH--------HHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cEEEEecCcccccCccCCceEEEEEeCCHHHHHH--------HHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHH
Confidence            8999999999999999999997433688886555        55557666666677888999999999999888878888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHHH
Q 012238          375 AEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEY  454 (467)
Q Consensus       375 ~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~~  454 (467)
                      +++++++++++++++++.+.|+ ++|.|+.|++..+++|+|+|.+++.+++.++++++||++.|++||+++..+++++++
T Consensus       321 ~~~~~~~~~~~~~~~~l~~~L~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~p~~Ri~~~~~~~~~i~~  399 (409)
T 4eu1_A          321 KELKQMSSRIAEVRKRLVSELK-ACGSVHDWSHIERQVGMMAYTGLTREQVELLRSEYHIYMTLNGRAAVSGLNSTNVEY  399 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HTTCCSCCHHHHHSCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hcCCCCCcceecCCceEEEEeCCCHHHHHHHHHcCCEEEcCCCEEEEEecCHhhHHH
Confidence            8899999999999999999999 887666678888999999999999888999998889999999999999888999999


Q ss_pred             HHHHHHHHHH
Q 012238          455 LADAIIDSYH  464 (467)
Q Consensus       455 ~~~~l~~~l~  464 (467)
                      ++++|+++++
T Consensus       400 ~~~~l~~~l~  409 (409)
T 4eu1_A          400 VSQAIHNVTK  409 (409)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998763

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=100.00  E-value=1.2e-52  Score=422.10  Aligned_cols=393  Identities=40%  Similarity=0.714  Sum_probs=336.1

Q ss_pred             ccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHH-HHhcCCCCcCCCCcchHHHHHHHHH
Q 012238           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENL-MLERGENKEYLPIEGLAAFNKVTAE  137 (467)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~-~~~~~~~~~Y~~~~G~~~lr~aia~  137 (467)
                      +++++..++++++.+.+.++.+..+++|||++|.|.|.++.+++++.+.+++.+ .+.......|.+..|.+++|+++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~   81 (397)
T 3fsl_A            2 FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAP   81 (397)
T ss_dssp             CTTCCCCCCCHHHHHHHHHHTCCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHH
T ss_pred             cccCCCCCCCchhhHHHHHhcCCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHH
Confidence            567888999999999999988888899999999887777766667999999998 8765445789888999999999999


Q ss_pred             HHhCCCCcccccC--ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCC
Q 012238          138 LLFGADNSVLKEQ--RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (467)
Q Consensus       138 ~l~~~~~~~~~~~--~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  215 (467)
                      ++....+..++++  +|++  |+|++++++++.+++..+.+||+|+++.|+|..|...++..|++++.+++.+++++++|
T Consensus        82 ~~~~~~~~~~~~~~~~i~~--t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  159 (397)
T 3fsl_A           82 LLFGADHPVLKQQRVATIQ--TLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVR  159 (397)
T ss_dssp             HHHCTTCHHHHTTCEEEEE--ESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEEC
T ss_pred             HHhcCCcccccccceEEEE--cCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCc
Confidence            9988776666788  8888  99999999998655666789999999999999999999999999999998656678899


Q ss_pred             hhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012238          216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (467)
Q Consensus       216 ~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~  295 (467)
                      ++.+++.+++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++. +.+..++..+....++
T Consensus       160 ~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~  238 (397)
T 3fsl_A          160 FNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM-EEDAYAIRAIASAGLP  238 (397)
T ss_dssp             HHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCT-TGGGHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCc-ccccHHHHHHHhcCCC
Confidence            999999998655678999999999999999999999999999999999999999999998762 1233455555566789


Q ss_pred             EEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH
Q 012238          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA  375 (467)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  375 (467)
                      +++++||||.+|++|+|+||+++.+++++.++.        +...++...+..+.+++.++|.++..++.+..+..+|.+
T Consensus       239 ~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~  310 (397)
T 3fsl_A          239 ALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGR--------VLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLK  310 (397)
T ss_dssp             EEEEEECTTTTTCGGGCCEEEEEECSSHHHHHH--------HHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred             EEEEecccccccCcCCCeeEEEEecCCHHHHHH--------HHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999999999999999744567777766        444455544555667788899999999998888777788


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHHHH
Q 012238          376 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYL  455 (467)
Q Consensus       376 ~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~~~  455 (467)
                      ++++++++++++++.+.+.|+ +++...++.+..+++|+|+|++++.+++.++++++||.+.+|+||+++..++++++++
T Consensus       311 ~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~Ris~~~~~~~~i~~~  389 (397)
T 3fsl_A          311 EVEEMRTRILAMRQELVKVLS-TEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRV  389 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHCTTSCCTHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTCEEEGGGCCTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hcCCCCCceeecCCceEEEecCCCHHHHHHHHHhCCEEECCCCeEEEEecCHhhHHHH
Confidence            899999999999999999999 7742213677888999999999998888888888999999999999998788999999


Q ss_pred             HHHHHHHH
Q 012238          456 ADAIIDSY  463 (467)
Q Consensus       456 ~~~l~~~l  463 (467)
                      +++|++++
T Consensus       390 ~~~l~~~l  397 (397)
T 3fsl_A          390 AKAFAAVM  397 (397)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhhC
Confidence            99998764

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=100.00  E-value=2.9e-50  Score=406.90  Aligned_cols=402  Identities=46%  Similarity=0.821  Sum_probs=330.8

Q ss_pred             ccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHh-cCCCCcCCCCcchHHHHHHH
Q 012238           57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE-RGENKEYLPIEGLAAFNKVT  135 (467)
Q Consensus        57 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~-~~~~~~Y~~~~G~~~lr~ai  135 (467)
                      |.++++...+++++.++.+..+++.++++|||+.|.|.|.++.+++++.+.+++.+.+. ......|.+..|.+++|+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~l   83 (412)
T 1ajs_A            4 SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCA   83 (412)
T ss_dssp             CTTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred             chhhhCcccCCchHHHHHHHHhhcCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHH
Confidence            46777888889999999888876666789999999987777666667899999988872 22346798899999999999


Q ss_pred             HHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCC-----CEEEEcCCCCcchHHHHhhCCCC-eEEeeeecC
Q 012238          136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG-----AKVLISSPTWGNHKNIFNDARVP-WSEYRYYDP  209 (467)
Q Consensus       136 a~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~g-----d~Vlv~~P~y~~~~~~~~~~G~~-~~~v~~~~~  209 (467)
                      ++++.+.++..+++++|++++|+||++|++++..++..+.+|     |+|+++.|+|..|...++..|++ ++.+++.++
T Consensus        84 a~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~  163 (412)
T 1ajs_A           84 SRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDT  163 (412)
T ss_dssp             HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEET
T ss_pred             HHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecC
Confidence            999877777777789998777999999999986555566799     99999999999999999999999 999998655


Q ss_pred             CCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012238          210 KTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (467)
Q Consensus       210 ~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~  289 (467)
                      +++++|++.+++.+++.+.+++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++.+...+++..+
T Consensus       164 ~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~  243 (412)
T 1ajs_A          164 EKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF  243 (412)
T ss_dssp             TTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred             CCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHH
Confidence            67889999999999864447788889999999999999999999999999999999999999999875200012244434


Q ss_pred             HhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhh
Q 012238          290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL  369 (467)
Q Consensus       290 ~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~  369 (467)
                      ....++++++.||||.+|++|+|+||++....+++.++.        +..++.......+.+++.++|.++..+|++..+
T Consensus       244 ~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  315 (412)
T 1ajs_A          244 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILR--------VLSQMQKIVRVTWSNPPAQGARIVARTLSDPEL  315 (412)
T ss_dssp             HHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHH--------HHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHH
T ss_pred             hccCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHH--------HHHHHHHHHhcccCCCChHHHHHHHHHHcCcch
Confidence            445678999999999999999999999611127775555        444455544455666788889999888987765


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCCh
Q 012238          370 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSL  449 (467)
Q Consensus       370 ~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~  449 (467)
                      ...|.+++++.+++++++++++.+.|+ +++.|..+++..+.+|+|+|.+++.+++..+++++||.+.+++||+++..++
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~Ris~~~~~~  394 (412)
T 1ajs_A          316 FHEWTGNVKTMADRILSMRSELRARLE-ALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTT  394 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCSSCCHHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTSEEEGGGCCT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCCeeEEcCCCceEEEeCCCHHHHHHHHHhCCEEecCCcEEEeeeCCH
Confidence            555667788999999999999999999 8764444677788999999999888888888888899999999999996688


Q ss_pred             hhHHHHHHHHHHHHHhcC
Q 012238          450 AKCEYLADAIIDSYHNVS  467 (467)
Q Consensus       450 ~~i~~~~~~l~~~l~~~~  467 (467)
                      +++++++++|++++++++
T Consensus       395 ~~i~~~~~~l~~~l~~~~  412 (412)
T 1ajs_A          395 KNLDYVATSIHEAVTKIQ  412 (412)
T ss_dssp             TTHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            999999999999998764

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=100.00  E-value=2e-50  Score=408.24  Aligned_cols=402  Identities=41%  Similarity=0.746  Sum_probs=328.4

Q ss_pred             cccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHH-HHhcCCCCcCCCCcchHHHHHH
Q 012238           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENL-MLERGENKEYLPIEGLAAFNKV  134 (467)
Q Consensus        56 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~-~~~~~~~~~Y~~~~G~~~lr~a  134 (467)
                      +|+|+++...+++++..+.+.++.+.++++|||+.|.|+|.++.+++++.+.+++.+ .+..+....|.+..|.+++|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~   81 (412)
T 1yaa_A            2 ATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSN   81 (412)
T ss_dssp             TTTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHH
T ss_pred             cchhccCcccCCCcHHHHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHH
Confidence            456788888999999999988876666789999999998887776668999999998 7754444679888999999999


Q ss_pred             HHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCC
Q 012238          135 TAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL  214 (467)
Q Consensus       135 ia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  214 (467)
                      +++++.+.+|..+++++|++++|+||+++++++..++..+.+||+|+++.|+|..|...++..|++++.+++.+++++++
T Consensus        82 ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~  161 (412)
T 1yaa_A           82 AAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSL  161 (412)
T ss_dssp             HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEE
T ss_pred             HHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCcc
Confidence            99999777777777899988889999999999865566667999999999999999999999999999999843446889


Q ss_pred             ChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012238          215 DFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (467)
Q Consensus       215 d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~  294 (467)
                      |++.+++.+++.+.++.++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++...+..++..+....+
T Consensus       162 d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~  241 (412)
T 1yaa_A          162 DLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLS  241 (412)
T ss_dssp             CHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTT
T ss_pred             CHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCC
Confidence            99999999975433467777799999999999999999999999999999999999999987520001223434434445


Q ss_pred             ---eEEEEecCccCcccCCCccceEEEec----CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCCh
Q 012238          295 ---ELLVAQSYSKNLGLYAERIGAMNVVC----SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNP  367 (467)
Q Consensus       295 ---~~i~~~S~SK~~~~~G~RiG~~~~v~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~  367 (467)
                         ++++++||||.+|++|+|+||+++++    .+++..+.        +..++....+..+.+++.+.|.++..+|++.
T Consensus       242 ~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~--------l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~  313 (412)
T 1yaa_A          242 TVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPA--------VTSQLAKIIRSEVSNPPAYGAKIVAKLLETP  313 (412)
T ss_dssp             TTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHH--------HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSH
T ss_pred             CCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHH--------HHHHHHHHHhhccCCCChHHHHHHHHHhCCH
Confidence               89999999999998899999995223    15552222        3333655444556677888999999999887


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccC
Q 012238          368 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGL  447 (467)
Q Consensus       368 ~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~  447 (467)
                      .+.+.|.+++++++++++++++.+.+.|+ +++.++.+++..+++|+|+|.+++.+++.++++++||.+.+..|||++..
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~Ris~~~~  392 (412)
T 1yaa_A          314 ELTEQWHKDMVTMSSRITKMRHALRDHLV-KLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGL  392 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCCeeeeccCceEEEeeCCCHHHHHHHHHhCCEEeccCcEEEEccC
Confidence            66666777789999999999999999999 77622236777889999999998887788888778999999789999876


Q ss_pred             ChhhHHHHHHHHHHHHHhc
Q 012238          448 SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       448 ~~~~i~~~~~~l~~~l~~~  466 (467)
                      +++++++++++|+++++.+
T Consensus       393 ~~~~i~~~~~~l~~~~~~~  411 (412)
T 1yaa_A          393 NQGNVEYVAKAIDEVVRFY  411 (412)
T ss_dssp             CTTTHHHHHHHHHHHHHHC
T ss_pred             CHhHHHHHHHHHHHHHHhh
Confidence            8899999999999998764

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=100.00  E-value=1.4e-49  Score=399.61  Aligned_cols=395  Identities=44%  Similarity=0.775  Sum_probs=305.3

Q ss_pred             ccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHH
Q 012238           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (467)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~  138 (467)
                      |+++...++++++.+...+..+.++++|||+.|.|.|.++.+++++.+.+++.+.+.......|.+..|.+++|++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~   81 (396)
T 2q7w_A            2 FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQEL   81 (396)
T ss_dssp             CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHH
T ss_pred             ccccccCCCchHHHHHHHHhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHH
Confidence            45677788888888877776555568999999998776664455789999998876543346898899999999999999


Q ss_pred             HhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhh
Q 012238          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG  218 (467)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~  218 (467)
                      +.+..+..+++++|++++|+||+++++++..++..+.+||+|+++.|+|..|...++..|++++.++..+++++++|++.
T Consensus        82 ~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~  161 (396)
T 2q7w_A           82 LFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDA  161 (396)
T ss_dssp             HHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHH
T ss_pred             HhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHH
Confidence            87665555678888765689999999998555555679999999999999999999999999999998644578899999


Q ss_pred             HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238          219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (467)
Q Consensus       219 l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (467)
                      +++.+++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++. .....++..+....+++++
T Consensus       162 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~i~  240 (396)
T 2q7w_A          162 LINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGL-EEDAEGLRAFAAMHKELIV  240 (396)
T ss_dssp             HHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCH-HHHTHHHHHHHHHCSCEEE
T ss_pred             HHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCc-cchhHHHHHHHhcCCcEEE
Confidence            999997543457889999999999999999999999999999999999999999998641 0012244444444678999


Q ss_pred             EecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                      ++||||.+|++|+|+||++.++.+++.++.        +...+....+..+.+++.++|.++..+|++..+.+.|.++++
T Consensus       241 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~  312 (396)
T 2q7w_A          241 ASSYSXNFGLYNERVGACTLVAADSETVDR--------AFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELT  312 (396)
T ss_dssp             EEECTTTTTCGGGCCEEEEEECSSHHHHHH--------HHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             EEeccccccccccccceEEEEcCCHHHHHH--------HHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHH
Confidence            999999999999999999611135654444        444355444445666788899999999988756666677788


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHHHHHHH
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADA  458 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~~~~~~  458 (467)
                      +.+++++++++.+.+.|+ +++.+..+++..+++|+|+|++++.+++.++++++||.+.+|.||+++..+++++++++++
T Consensus       313 ~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~Ris~~~~~~e~i~~~~~~  391 (396)
T 2q7w_A          313 DMRQRIQRMRQLFVNTLQ-EKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEA  391 (396)
T ss_dssp             HC-CHHHHHHHHHHHHHH-HTTCCSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-hcCCCCCcceecCCCceEEEecCCHHHHHHHHHhcCeeecCCceEEEeecCHHHHHHHHHH
Confidence            999999999999999999 8763223677788999999999888888888888899999988999996688999999999


Q ss_pred             HHHHH
Q 012238          459 IIDSY  463 (467)
Q Consensus       459 l~~~l  463 (467)
                      |++++
T Consensus       392 l~~~l  396 (396)
T 2q7w_A          392 IVAVL  396 (396)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98764

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=100.00  E-value=2.4e-48  Score=390.35  Aligned_cols=391  Identities=38%  Similarity=0.664  Sum_probs=315.7

Q ss_pred             ccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHH
Q 012238           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (467)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~  138 (467)
                      |+++...+++++.++.+.++.+.++++|||+.|.|.+.++.+++++.+.+++.+.+.......|.+..|.+++|++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~   81 (394)
T 2ay1_A            2 LGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGEL   81 (394)
T ss_dssp             GGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHH
T ss_pred             CccCccCCCccHHHHHHHHHhCCCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHH
Confidence            56678888999999888887666678999999998766654455789999998877543457898889999999999999


Q ss_pred             HhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhh
Q 012238          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG  218 (467)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~  218 (467)
                      +.+.   .+++++|++++|+||++|++++..++..+.+||+|+++.|+|..|...++..|++++.+++++++++++|++.
T Consensus        82 ~~~~---~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~  158 (394)
T 2ay1_A           82 ILGD---GLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEG  158 (394)
T ss_dssp             HHGG---GCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHH
T ss_pred             HhCC---CCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHH
Confidence            8543   1247788766789999999998555544559999999999999999999999999999998644578899999


Q ss_pred             HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238          219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (467)
Q Consensus       219 l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (467)
                      +++.+++.+++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++. ..+..++..+...++++++
T Consensus       159 l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~i~  237 (394)
T 2ay1_A          159 MKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGL-EEDAAGTRLIASRIPEVLI  237 (394)
T ss_dssp             HHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCH-HHHHHHHHHHHHHCSSEEE
T ss_pred             HHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCc-ccchHHHHHHhhcCCCEEE
Confidence            999998643457888889999999999999999999999999999999999999988641 0012234334444678999


Q ss_pred             EecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                      ++||||.+|++|+|+||++.++.++++++.        +...+....+..+.+++.++|.++..+|++..+.+.|.++++
T Consensus       238 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~  309 (394)
T 2ay1_A          238 AASCSKNFGIYRERTGCLLALCADAATREL--------AQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELE  309 (394)
T ss_dssp             EEECTTTTTCGGGCEEEEEEECSSHHHHHH--------HHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             EEeccCCCcCcCCccceEEEEeCCHHHHHH--------HHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHH
Confidence            999999999999999999621136766665        444454444444556688888899888987766666677789


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHHHHHHH
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADA  458 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~~~~~~  458 (467)
                      +++++++++++.+.+.|+ +++.+..+++..+.+|+|+|++++.+++.++++++||.+.+|.||+++..+++++++++++
T Consensus       310 ~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~gi~v~~~~Ris~~~~~~~~i~~~~~~  388 (394)
T 2ay1_A          310 AVRSGMLRLREQLAGELR-DLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARA  388 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHTSSTTTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-hcCCCCCeeEEcCCceEEEeeCCCHHHHHHHHHhCCEEecCCCeEEeecCCHhhHHHHHHH
Confidence            999999999999999998 7752223677778889999999887778888877899999988999986688999999999


Q ss_pred             HHHH
Q 012238          459 IIDS  462 (467)
Q Consensus       459 l~~~  462 (467)
                      |+++
T Consensus       389 l~~~  392 (394)
T 2ay1_A          389 IIEV  392 (394)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            9876

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=100.00  E-value=6.9e-47  Score=382.96  Aligned_cols=380  Identities=23%  Similarity=0.314  Sum_probs=299.3

Q ss_pred             CCCCCCCcccchHHHhhcC----CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHH
Q 012238           62 VTMAPPDPILGVSEAFKAD----TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE  137 (467)
Q Consensus        62 ~~~~~~~~i~~~~~~~~~~----~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~  137 (467)
                      ....++++++.+.+++++.    .+.++|||++|.|.|.+..+++++.+.+++.+..... ...|.+..|.+++|+++++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~   91 (418)
T 3rq1_A           13 KGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSE-HVGYAPIAGIPDFLCAAEK   91 (418)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHH-HHSCCCTTCCHHHHHHHHH
T ss_pred             CCCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhcccc-cCCCCCCCChHHHHHHHHH
Confidence            3344667787877666532    2347999999999887766666888998887754322 2679899999999999999


Q ss_pred             HHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChh
Q 012238          138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE  217 (467)
Q Consensus       138 ~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~  217 (467)
                      ++.+.++.. .+++|++  |+||++++.++  +...+.+||+|+++.|+|..|...++..|++++.+|++++ ++++|++
T Consensus        92 ~~~~~~~~~-~~~~i~~--t~g~~~al~~~--~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~  165 (418)
T 3rq1_A           92 ECFGNFRPE-GHIRSIA--TAGGTGGIHHL--IHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDE-HNNFNHE  165 (418)
T ss_dssp             HHHGGGCCS-SEEEEEE--ESHHHHHHHHH--HHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCT-TSSBCHH
T ss_pred             HHhcccCcc-ccccEEE--CCchHHHHHHH--HHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCC-CCCcCHH
Confidence            986654432 1338888  99999999998  4445779999999999999999999999999999998533 4789999


Q ss_pred             hHHHHHHcC--CCCcEEEEeCCC-CCCCCCCCCHHHHHHHHHHHH------hcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012238          218 GMIADIKAA--PGGSFILLHGCA-HNPTGIDPTPEQWEKIADVIQ------EKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (467)
Q Consensus       218 ~l~~~l~~~--~~~~~~i~i~~p-~NPTG~~~~~~~l~~l~~~~~------~~~~~li~Deay~~~~~~~~~~~~~~~~~  288 (467)
                      .+++.+++.  +..+.++++++| |||||.+++.+++++|+++|+      +||+++|+||+|.++.+++     .....
T Consensus       166 ~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~-----~~~~~  240 (418)
T 3rq1_A          166 AFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEK-----DEVRA  240 (418)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCH-----HHHHG
T ss_pred             HHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCCh-----HHHHH
Confidence            999999741  023348888999 999999999999999999999      8999999999999988642     11112


Q ss_pred             HHh----cCCe--EEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHH
Q 012238          289 FAT----RGME--LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVAN  362 (467)
Q Consensus       289 ~~~----~~~~--~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  362 (467)
                      +..    ..++  +++++||||.+|++|+|+||++.++.++++++.        +...........+.+++.++|.++..
T Consensus       241 ~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~  312 (418)
T 3rq1_A          241 FFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADE--------FFEVNKSTSRATWSNICRPAMRTMAN  312 (418)
T ss_dssp             GGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHH--------HHHHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred             HHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHH--------HHHHHHHHHhhccCCCchHHHHHHHH
Confidence            222    2234  689999999999999999999622238888887        43322222222345688889999999


Q ss_pred             HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-CHHHHHHHHHcccEEEeCCC-
Q 012238          363 VVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-NKAQSDNMTNKWHVYMTKDG-  440 (467)
Q Consensus       363 ~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-~~~~~~~ll~~~gI~v~~gg-  440 (467)
                      +|++..+.+.|.+++++++++++++++.+.+.|+ ++|    +++..+++|+|+|+++ +.+.+.+.++++||.+.||+ 
T Consensus       313 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~  387 (418)
T 3rq1_A          313 IVADPAKFKEYEAERNCYYQLIRDRADIFKQEAA-QVG----LPMLPYRGGFFITIPTDSANAICEELKKEHIYVIALAN  387 (418)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHT----CCCCCCCSSSEEEEECTTHHHHHHHHHHTTEECEECSS
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC----CCCCCCCceEEEEcCCCCHHHHHHHHHhCCEEEecCCC
Confidence            9998877777888888899999999999999999 876    5778899999999865 44444445667899999986 


Q ss_pred             --eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          441 --RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 --Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                        |||++..+++++++++++|+++++++
T Consensus       388 ~iRis~~~~~~~~i~~~~~~l~~~l~~~  415 (418)
T 3rq1_A          388 GIRIAACGIPKCQMTGLAEKIYNAMKSL  415 (418)
T ss_dssp             EEEEEGGGSCHHHHTTHHHHHHHHHHHT
T ss_pred             CeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence              99998668999999999999999875

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=100.00  E-value=2.8e-46  Score=379.76  Aligned_cols=371  Identities=13%  Similarity=0.123  Sum_probs=285.1

Q ss_pred             ccCCCCCCCCcccchHHHhhcCCCC--CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHH
Q 012238           59 FEGVTMAPPDPILGVSEAFKADTDE--KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA  136 (467)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~--~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia  136 (467)
                      ++.+...++++|.++.+.++.+.++  ++|||++|.| +..+..++++.+++++.+.+.......|.+..|.+++|++++
T Consensus        28 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~l~~g~~-~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la  106 (427)
T 3dyd_A           28 PSDMAKKTFNPIRAIVDNMKVKPNPNKTMISLSIGDP-TVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIA  106 (427)
T ss_dssp             CCC----------------CCCCCTTSCCEECCCSCT-TTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHH
T ss_pred             hhhHhhcccchHHHHHHHHhhcccCCCCEEeCCCcCC-CccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHH
Confidence            4566777888899998888766544  5699999997 322223348999999999886654578989999999999999


Q ss_pred             HHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCCh
Q 012238          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (467)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  216 (467)
                      +++.+. +..+++++|++  |+||++|+.+++  ...+.+||+|+++.|+|..|...++..|++++.++++++.++++|+
T Consensus       107 ~~~~~~-~~~~~~~~v~~--t~g~t~al~~~~--~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~  181 (427)
T 3dyd_A          107 SYYHCP-EAPLEAKDVIL--TSGCSQAIDLCL--AVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDL  181 (427)
T ss_dssp             HHHCBT-TBCCCGGGEEE--ESSHHHHHHHHH--HHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECH
T ss_pred             HHHhhc-CCCCChHHEEE--ecCcHHHHHHHH--HHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCH
Confidence            998766 77777899998  999999999983  3346799999999999999999999999999999997667788999


Q ss_pred             hhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012238          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (467)
Q Consensus       217 ~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~  296 (467)
                      +.+++.++   ++++++++++||||||.+++.++|++|+++|+++|+++|+||+|.++.+++.  ...++.. .....++
T Consensus       182 ~~l~~~l~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~--~~~~~~~-~~~~~~v  255 (427)
T 3dyd_A          182 KQLEYLID---EKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDC--KYEPLAT-LSTDVPI  255 (427)
T ss_dssp             HHHHSSCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSC--CCCCGGG-GCSSCCE
T ss_pred             HHHHHHhc---cCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCC--cCccHHH-hCCCCcE
Confidence            99999886   4678889999999999999999999999999999999999999999987542  1112211 2334578


Q ss_pred             EEEecCccCcccCCCccceEEEecCC------HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhH
Q 012238          297 LVAQSYSKNLGLYAERIGAMNVVCSS------SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALF  370 (467)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~  370 (467)
                      ++++||||.|+++|+|+||++  +.+      +++++.            +...... ..+++.++|.++..+|++..  
T Consensus       256 i~~~S~sK~~~~~G~riG~~~--~~~~~~~~~~~i~~~------------l~~~~~~-~~~~~~~~~~a~~~~L~~~~--  318 (427)
T 3dyd_A          256 LSCGGLAKRWLVPGWRLGWIL--IHDRRDIFGNEIRDG------------LVKLSQR-ILGPCTIVQGALKSILCRTP--  318 (427)
T ss_dssp             EEEEESTTTSSCGGGCCEEEE--EECSTTSSHHHHHHH------------HHHHHHH-HCCSCHHHHHHHHHHHHHSC--
T ss_pred             EEEeeccccCCCcCcceEEEE--ecCcchhhHHHHHHH------------HHHHHhc-cCCCCHHHHHHHHHHHHhcC--
Confidence            999999999999999999996  333      344444            5444332 45678888999888886321  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC----------HHHHHHHHHcccEEEeCCC
Q 012238          371 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----------KAQSDNMTNKWHVYMTKDG  440 (467)
Q Consensus       371 ~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~----------~~~~~~ll~~~gI~v~~gg  440 (467)
                         .+.+++++++++++++.+.+.|+ ++.  + +.+..|++|+|+|++++          .++++++++++||++.||+
T Consensus       319 ---~~~~~~~~~~~~~~~~~l~~~L~-~~~--g-~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~  391 (427)
T 3dyd_A          319 ---GEFYHNTLSFLKSNADLCYGALA-AIP--G-LRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPAT  391 (427)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHH-HST--T-EEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGG
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHh-cCC--C-ceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCc
Confidence               23367788899999999999999 762  1 67778899999987542          4567788877899999872


Q ss_pred             --------eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          441 --------RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 --------Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                              ||+++. +++++++++++|.++++++
T Consensus       392 ~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~~  424 (427)
T 3dyd_A          392 CFEYPNFIRVVITV-PEVMMLEACSRIQEFCEQH  424 (427)
T ss_dssp             GGTCTTEEEEESCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEEECC-CHHHHHHHHHHHHHHHHHh
Confidence                    999985 8999999999999998765

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=100.00  E-value=1.5e-46  Score=376.54  Aligned_cols=359  Identities=16%  Similarity=0.167  Sum_probs=286.1

Q ss_pred             CCCCCcccchHHHhhc--CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhC
Q 012238           64 MAPPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFG  141 (467)
Q Consensus        64 ~~~~~~i~~~~~~~~~--~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~  141 (467)
                      ..+++++..+.+..++  ..++++|+|+.|.|    ..++ ++.+.+++.+.+..+. ..|.+..|.+++|+++++++..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~~g~~~lr~~ia~~~~~   83 (385)
T 1b5p_A           10 AMKPSATVAVNAKALELRRQGVDLVALTAGEP----DFDT-PEHVKEAARRALAQGK-TKYAPPAGIPELREALAEKFRR   83 (385)
T ss_dssp             HCCCCHHHHHHHHHHHHHHTTCCCEECCCSSC----SSCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHH
T ss_pred             hcCcchHHHHHHHHHHHHhcCCCEEEecCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHH
Confidence            3455556555554432  13457999999987    4443 6788888888775543 6798888999999999999987


Q ss_pred             CCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHH
Q 012238          142 ADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA  221 (467)
Q Consensus       142 ~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~  221 (467)
                      .+|..+++++|++  |+|++++++++  +...+.+||+|+++.|+|..|...++..|++++.+++++++++.+|++.+++
T Consensus        84 ~~g~~~~~~~i~~--t~g~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  159 (385)
T 1b5p_A           84 ENGLSVTPEETIV--TVGGSQALFNL--FQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRR  159 (385)
T ss_dssp             TTCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHT
T ss_pred             HhCCCCChHHEEE--cCChHHHHHHH--HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHH
Confidence            7787788899999  99999999998  4445779999999999999999999999999999999644567899999998


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEec
Q 012238          222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (467)
Q Consensus       222 ~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  301 (467)
                      .++   ++++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++ .  ..++..+ .. +++++++|
T Consensus       160 ~l~---~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~--~~~~~~~-~~-~~~i~~~s  231 (385)
T 1b5p_A          160 AIT---PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-E--HFSPGRV-AP-EHTLTVNG  231 (385)
T ss_dssp             TCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-C--CCCGGGT-CT-TTEEEEEE
T ss_pred             hcC---CCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-C--CCCHHHc-CC-CCEEEEEe
Confidence            886   467888999999999999999999999999999999999999999988753 1  1122122 22 67999999


Q ss_pred             CccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 012238          302 YSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMA  381 (467)
Q Consensus       302 ~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~  381 (467)
                      |||.+|++|+|+||++   .++++++.            +.........+++.+.|.++..+|++....   .+++++.+
T Consensus       232 ~SK~~~~~G~RiG~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~  293 (385)
T 1b5p_A          232 AAKAFAMTGWRIGYAC---GPKEVIKA------------MASVSRQSTTSPDTIAQWATLEALTNQEAS---RAFVEMAR  293 (385)
T ss_dssp             STTTTTCGGGCCEEEE---CCHHHHHH------------HHHHHHTTTCSCCHHHHHHHHHHHHCHHHH---HHHHHHHH
T ss_pred             chhhcCCcccceEEEE---eCHHHHHH------------HHHHHhhccCCCCHHHHHHHHHHHhCCCcc---hHHHHHHH
Confidence            9999999999999996   67888777            555555555678888998888888652111   23477889


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCC------C--eEEeccC
Q 012238          382 GRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD------G--RISLAGL  447 (467)
Q Consensus       382 ~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~  447 (467)
                      ++++++|+.+.+.|+ ++|    +.+..+++++|+|+.+     +. ++.+.++ ++||.+.+|      +  |||++. 
T Consensus       294 ~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gv~v~~g~~f~~~~~iRis~~~-  366 (385)
T 1b5p_A          294 EAYRRRRDLLLEGLT-ALG----LKAVRPSGAFYVLMDTSPIAPDEVRAAERLL-EAGVAVVPGTDFAAFGHVRLSYAT-  366 (385)
T ss_dssp             HHHHHHHHHHHHHHH-HHT----CCBCCCSBTTEEEEECTTTCSSHHHHHHHHH-HTTEECEESGGGTCTTEEEEECCS-
T ss_pred             HHHHHHHHHHHHHHH-HCC----CeecCCCeeEEEEEecCCCCCCHHHHHHHHH-HCCeEEecccccCCCCeEEEEecC-
Confidence            999999999999999 776    5777889999998754     34 4466666 679999987      2  999995 


Q ss_pred             ChhhHHHHHHHHHHHHHh
Q 012238          448 SLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       448 ~~~~i~~~~~~l~~~l~~  465 (467)
                      +++++++++++|.+++++
T Consensus       367 ~~~~i~~~l~~l~~~l~~  384 (385)
T 1b5p_A          367 SEENLRKALERFARVLGR  384 (385)
T ss_dssp             CHHHHHHHHHHGGGGC--
T ss_pred             CHHHHHHHHHHHHHHHhh
Confidence            889999999999877653

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-44  Score=370.33  Aligned_cols=358  Identities=16%  Similarity=0.135  Sum_probs=282.6

Q ss_pred             CCCCcccchHHHhhc------CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHH
Q 012238           65 APPDPILGVSEAFKA------DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (467)
Q Consensus        65 ~~~~~i~~~~~~~~~------~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~  138 (467)
                      .+++.+..+.+....      ..++++|||+.|.|    ..++ ++.+.+++.+.+.......|.+..|.+++|++++++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~----~~~~-~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~  107 (447)
T 3b46_A           33 TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFF----SYSP-PQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKL  107 (447)
T ss_dssp             CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSC----SSCC-CHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHH
T ss_pred             cCccHHHHHHHHHHhhccchhccCCCeEEccCCCC----CCCC-CHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHH
Confidence            445555555544421      14468999999987    3343 788999998887542236798888999999999999


Q ss_pred             HhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCC--------
Q 012238          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK--------  210 (467)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~--------  210 (467)
                      +....|..+++++|++  |+|+++++.++  +...+.+||+|++++|+|..|...++..|++++.++++++.        
T Consensus       108 l~~~~g~~~~~~~v~~--t~G~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~  183 (447)
T 3b46_A          108 YSPIYNTELKAENVTV--TTGANEGILSC--LMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTR  183 (447)
T ss_dssp             HTTTTTSCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBC
T ss_pred             HHHhcCCCCChhhEEE--eCCHHHHHHHH--HHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCcccccccccc
Confidence            9877777777889999  99999999998  44457799999999999999999999999999999986442        


Q ss_pred             --CCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012238          211 --TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (467)
Q Consensus       211 --~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~  288 (467)
                        ++++|++.+++.++   ++++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++.   ..++..
T Consensus       184 ~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~  257 (447)
T 3b46_A          184 GEEWTIDFEQFEKAIT---SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS---FTRIAT  257 (447)
T ss_dssp             STTSEECHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC---CCCGGG
T ss_pred             ccCcccCHHHHHHhhc---cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCC---CcCHHH
Confidence              56899999999886   5778888999999999999999999999999999999999999999887631   111111


Q ss_pred             H-HhcCCeEEEEecCccCcccCCCccceEEEecC-CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCC
Q 012238          289 F-ATRGMELLVAQSYSKNLGLYAERIGAMNVVCS-SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGN  366 (467)
Q Consensus       289 ~-~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~  366 (467)
                      + ....++++++.|+||.++++|||+||++   + ++++++.            +.........+++.+.|.++..+|+.
T Consensus       258 ~~~~~~~~~i~i~S~sK~~~~~G~riG~~~---~~~~~l~~~------------l~~~~~~~~~~~~~~~~~a~~~aL~~  322 (447)
T 3b46_A          258 LSPEIGQLTLTVGSAGKSFAATGWRIGWVL---SLNAELLSY------------AAKAHTRICFASPSPLQEACANSIND  322 (447)
T ss_dssp             SCHHHHTTEEEEEEHHHHTTCTTSCCEEEE---CSCHHHHHH------------HHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred             cCCCCCCcEEEEecCchhcCCcchhhEEEE---eCCHHHHHH------------HHHHHhhccCCCChHHHHHHHHHHhC
Confidence            1 1223579999999999999999999996   6 8888877            44433333445677788888777754


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC------------------H--HHHH
Q 012238          367 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN------------------K--AQSD  426 (467)
Q Consensus       367 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~------------------~--~~~~  426 (467)
                      ..    +++++++++++++++++++.+.|+ ++|    +++..+++|+|+|+.+.                  .  ++++
T Consensus       323 ~~----~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  393 (447)
T 3b46_A          323 AL----KIGYFEKMRQEYINKFKIFTSIFD-ELG----LPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISH  393 (447)
T ss_dssp             HH----HHTHHHHHHHHHHHHHHHHHHHHH-HHT----CCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHH
T ss_pred             Cc----chHHHHHHHHHHHHHHHHHHHHHH-HCC----CeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHH
Confidence            31    134477899999999999999999 876    56777889999987542                  1  4566


Q ss_pred             HHHHcccEEEeCC-------------C--eEEeccCChhhHHHHHHHHHHH
Q 012238          427 NMTNKWHVYMTKD-------------G--RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       427 ~ll~~~gI~v~~g-------------g--Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                      ++++++||.+.||             +  ||+++. +++++++++++|++.
T Consensus       394 ~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~-~~e~l~~~~~~l~~~  443 (447)
T 3b46_A          394 WLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK-DDAYLENAVERLKLL  443 (447)
T ss_dssp             HHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCS-CHHHHHHHHHHGGGG
T ss_pred             HHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeC-CHHHHHHHHHHHHHH
Confidence            7777789999875             2  999997 899999999999873

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=100.00  E-value=1.2e-44  Score=366.77  Aligned_cols=371  Identities=15%  Similarity=0.105  Sum_probs=294.6

Q ss_pred             cccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-CCcCCCCcchHHHHHHHH
Q 012238           58 RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTA  136 (467)
Q Consensus        58 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~lr~aia  136 (467)
                      .++++...+++.+.++.+...   ++++|+|+.|.|    .+++ ++.+.+++.+.+..+. ...|.+..|.+++|++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~---~~~~i~l~~g~~----~~~~-~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la   77 (422)
T 3fvs_A            6 QARRLDGIDYNPWVEFVKLAS---EHDVVNLGQGFP----DFPP-PDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILA   77 (422)
T ss_dssp             SCGGGTTCCCCHHHHHHHHHH---TSCCEECCCSSC----SSCC-CHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHH
T ss_pred             HHHHhhccCccHHHHHHHHhh---cCCceEeCCCCC----CCCC-CHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHH
Confidence            345566666776766665544   248999999987    4554 7899999998886532 368988889999999999


Q ss_pred             HHHhCCCCccccc-CceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeec-------
Q 012238          137 ELLFGADNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD-------  208 (467)
Q Consensus       137 ~~l~~~~~~~~~~-~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~-------  208 (467)
                      +++...+|..+++ ++|++  |+|+++++.++  +...+.+||+|+++.|+|..|...++..|++++.+++++       
T Consensus        78 ~~~~~~~g~~~~~~~~i~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~  153 (422)
T 3fvs_A           78 SFFGELLGQEIDPLRNVLV--TVGGYGALFTA--FQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGE  153 (422)
T ss_dssp             HHHHHHHTCCCCHHHHEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSS
T ss_pred             HHHHHhhCCCCCCCCcEEE--ECChHHHHHHH--HHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccc
Confidence            9998766777777 69999  99999999998  344467999999999999999999999999999999864       


Q ss_pred             ---CCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhH
Q 012238          209 ---PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS  285 (467)
Q Consensus       209 ---~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~  285 (467)
                         +.++.+|++.+++.++   ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...+
T Consensus       154 ~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~  228 (422)
T 3fvs_A          154 LGSSSNWQLDPMELAGKFT---SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH--QHIS  228 (422)
T ss_dssp             CCBGGGSBCCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCC
T ss_pred             cccccCCCCCHHHHHhhcC---CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC--CCCC
Confidence               1345689999998886   5788899999999999999999999999999999999999999999887642  1122


Q ss_pred             HHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhC
Q 012238          286 VRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVG  365 (467)
Q Consensus       286 ~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~  365 (467)
                      +..+....++++++.|+||.+|++|+|+||++   .++++++.            +.........+++.+.|.++..+|.
T Consensus       229 ~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~  293 (422)
T 3fvs_A          229 IASLPGMWERTLTIGSAGKTFSATGWKVGWVL---GPDHIMKH------------LRTVHQNSVFHCPTQSQAAVAESFE  293 (422)
T ss_dssp             GGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEE---CCHHHHHH------------HHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred             hhhcccccCcEEEEecchhccCCccceEEEEE---eCHHHHHH------------HHHHHhhccCCCCcHHHHHHHHHHh
Confidence            22222223578999999999999999999996   78888777            5555444455677888888887775


Q ss_pred             ChhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCH------------------HHHH
Q 012238          366 NPALF-DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNK------------------AQSD  426 (467)
Q Consensus       366 ~~~~~-~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~------------------~~~~  426 (467)
                      +.... ..+.+++++.+++++++++.+.+.|+ ++|    +.+..+.+|+|+|+++..                  +++.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (422)
T 3fvs_A          294 REQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQ-SVG----LKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVK  368 (422)
T ss_dssp             HHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHH-TTT----CEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHH
T ss_pred             hccccccchHHHHHHHHHHHHHHHHHHHHHHH-HcC----CeecCCCeeeEEEEechhhcccccccccccccccHHHHHH
Confidence            31000 00133467889999999999999999 876    577888999999986522                  5577


Q ss_pred             HHHHcccEEEeCC-------------C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          427 NMTNKWHVYMTKD-------------G--RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       427 ~ll~~~gI~v~~g-------------g--Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ++++++||.+.+|             +  |||++. +++++++++++|+++++++
T Consensus       369 ~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~l  422 (422)
T 3fvs_A          369 WMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQAMDEKLRKWKVEL  422 (422)
T ss_dssp             HHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC-CHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHhhC
Confidence            7888789999884             2  999998 9999999999999998764

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=100.00  E-value=4.4e-43  Score=362.90  Aligned_cols=341  Identities=14%  Similarity=0.123  Sum_probs=273.0

Q ss_pred             hHHHHHHHHHHHhc--C-CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh-CCCC
Q 012238          103 LDVVKKAENLMLER--G-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-FPGA  178 (467)
Q Consensus       103 ~~~v~~a~~~~~~~--~-~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~-~~gd  178 (467)
                      |+.+.++..+.+..  + ....|.+..|.+++|+++++++...+|..+++++|++  |+|+++++.++  +...+ .+||
T Consensus       108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~--~~~l~~~~gd  183 (500)
T 3tcm_A          108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFL--TDGASPGVHLM--MQLLIRNEKD  183 (500)
T ss_dssp             CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEE--ESSSHHHHHHH--HHHHCCSTTE
T ss_pred             CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEE--cCCHHHHHHHH--HHHHcCCCCC
Confidence            33444444555543  2 4578999999999999999999877777788999999  99999999998  33345 6999


Q ss_pred             EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012238          179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (467)
Q Consensus       179 ~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~~~~~l~~l~  255 (467)
                      +|+++.|+|..|...++..|++++.++++++.++++|++.|++.+++.   ..+++++++++||||||.+++.+++++|+
T Consensus       184 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~  263 (500)
T 3tcm_A          184 GILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIV  263 (500)
T ss_dssp             EEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             EEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHH
Confidence            999999999999999999999999999987667899999999999742   12677888899999999999999999999


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH------hcCCeEEEEecCccCc-ccCCCccceEEEecCCHHHHhh
Q 012238          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA------TRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       256 ~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                      ++|++||+++|+||+|+++.++.. ....++..+.      ....++++++||||.| |++|+|+||++.+..++++++.
T Consensus       264 ~la~~~~~~li~Deay~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~  342 (500)
T 3tcm_A          264 KFCKNEGLVLLADEVYQENIYVDN-KKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQ  342 (500)
T ss_dssp             HHHHHHTCEEEEECTTTTCBCCTT-CCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHH
T ss_pred             HHHHHcCCEEEEecCccccccCCC-CCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHH
Confidence            999999999999999999988531 1222332222      1223689999999999 8999999999743347888887


Q ss_pred             hhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCCh----hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 012238          329 CCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNP----ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD  404 (467)
Q Consensus       329 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~  404 (467)
                                  +.+... ...+++..+|.++..+++.+    ..++.|.+++++++++++++++.+.+.|+ ++.   +
T Consensus       343 ------------l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~-~~~---g  405 (500)
T 3tcm_A          343 ------------IYKIAS-VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFN-KLE---G  405 (500)
T ss_dssp             ------------HHHHHH-TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TST---T
T ss_pred             ------------HHHHHh-cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC---C
Confidence                        444433 35678888999999998743    34556777788999999999999999999 762   2


Q ss_pred             cccccCCcceEEecC--CCH--------------H-HHHHHHHcccEEEeCC-------C----eEEeccCChhhHHHHH
Q 012238          405 WSFILRQIGMFSFTG--LNK--------------A-QSDNMTNKWHVYMTKD-------G----RISLAGLSLAKCEYLA  456 (467)
Q Consensus       405 ~~~~~~~~g~f~~~~--l~~--------------~-~~~~ll~~~gI~v~~g-------g----Ris~~~~~~~~i~~~~  456 (467)
                      +++..+++|+|+|++  +..              + ++.++++++||++.||       |    ||+++ .+++++++++
T Consensus       406 ~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~i  484 (500)
T 3tcm_A          406 ITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL-PQEDKIPAVI  484 (500)
T ss_dssp             EECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC-SCTTTHHHHH
T ss_pred             cEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC-CCHHHHHHHH
Confidence            788899999999953  322              1 2567888889999976       2    99999 5889999999


Q ss_pred             HHHHHHHHhc
Q 012238          457 DAIIDSYHNV  466 (467)
Q Consensus       457 ~~l~~~l~~~  466 (467)
                      ++|.++++++
T Consensus       485 ~~l~~~~~~~  494 (500)
T 3tcm_A          485 SRFTVFHEAF  494 (500)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988753

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=100.00  E-value=1.8e-43  Score=354.60  Aligned_cols=357  Identities=18%  Similarity=0.150  Sum_probs=278.7

Q ss_pred             CCCCCCCCcccchHHHhhc--CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHH
Q 012238           61 GVTMAPPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (467)
Q Consensus        61 ~~~~~~~~~i~~~~~~~~~--~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~  138 (467)
                      ++...+++++..+.+..++  ..++++|||+.|.+    ..+. ++.+.+++.+.+.... ..|.+..|.+++|++++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~~g~~~lr~~ia~~   80 (391)
T 3h14_A            7 SRSAVDPFIVMDVMEAARRAEEAGRRIIHMEVGQP----GTGA-PRGAVEALAKSLETDA-LGYTVALGLPALRQRIARL   80 (391)
T ss_dssp             STTCCCCCTTHHHHHHHHHHHHTTCCCEECCCSSC----SSCS-CHHHHHHHHHHHC-----------CCHHHHHHHHHH
T ss_pred             hHhhcCcchHHHHHHHHHHHHhcCCCeEEccCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCChHHHHHHHHHH
Confidence            4444555555555443331  23468999999987    4554 7889999988876543 7898888999999999999


Q ss_pred             HhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhh
Q 012238          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG  218 (467)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~  218 (467)
                      +...+|..+++++|++  |+||++++.++  +...+.+||+|+++.|+|..+...++..|++++.++++++.++.+|++.
T Consensus        81 ~~~~~g~~~~~~~v~~--t~g~~~al~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  156 (391)
T 3h14_A           81 YGEWYGVDLDPGRVVI--TPGSSGGFLLA--FTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPAD  156 (391)
T ss_dssp             HHHHHCCCCCGGGEEE--ESSHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHH
T ss_pred             HHHHhCCCCCHHHEEE--ecChHHHHHHH--HHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHH
Confidence            9776666677899999  99999999998  4445679999999999999999999999999999999655567889988


Q ss_pred             HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238          219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (467)
Q Consensus       219 l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (467)
                      +++.      +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++....      .....+++++
T Consensus       157 l~~~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~------~~~~~~~~i~  224 (391)
T 3h14_A          157 FAGL------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVT------ALELTDECYV  224 (391)
T ss_dssp             HTTS------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCC------GGGTCSSSEE
T ss_pred             HHhc------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcC------hhhcCCCEEE
Confidence            8764      456778889999999999999999999999999999999999999987642111      1123568999


Q ss_pred             EecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                      ++|+||.+|++|+|+||++   .++++++.            +.........+++.+.|.++..+|..       .+.++
T Consensus       225 ~~s~sK~~g~~G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~-------~~~~~  282 (391)
T 3h14_A          225 INSFSKYFSMTGWRVGWMV---VPEDQVRV------------VERIAQNMFICAPHASQVAALAALDC-------DAELQ  282 (391)
T ss_dssp             EEESSSTTCCTTSCCEEEE---CCGGGHHH------------HHHHHHHTTCCCCHHHHHHHHHHTTC-------HHHHH
T ss_pred             EEechhccCCccceeEEEE---eCHHHHHH------------HHHHHhhhccCCCHHHHHHHHHHhCC-------hHHHH
Confidence            9999999999999999996   77777777            55555555667888888888778873       24477


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCC---------C--e
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD---------G--R  441 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g---------g--R  441 (467)
                      +.+++++++++.+.+.|+ +++.   ..+..+.+++|+|+.+     +. ++.+++++++||.+.+|         +  |
T Consensus       283 ~~~~~~~~~~~~l~~~l~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iR  358 (391)
T 3h14_A          283 ANLDVYKANRKLMLERLP-KAGF---TRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLR  358 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHTC---CCBCCCCBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEE
T ss_pred             HHHHHHHHHHHHHHHHHH-HcCC---CcccCCCeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEE
Confidence            889999999999999999 8764   2345788889988743     33 45677787779999875         1  9


Q ss_pred             EEeccCChhhHHHHHHHHHHHHHhc
Q 012238          442 ISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       442 is~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      |+++. +++++++++++|++++++.
T Consensus       359 is~~~-~~~~i~~~l~~l~~~~~~~  382 (391)
T 3h14_A          359 FSYAR-ATADIEEGLDRLEAFMQAR  382 (391)
T ss_dssp             EECCS-CHHHHHHHHHHHHHHHHHC
T ss_pred             EEecC-CHHHHHHHHHHHHHHHHHh
Confidence            99998 8899999999999998753

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=100.00  E-value=2.3e-43  Score=353.54  Aligned_cols=361  Identities=18%  Similarity=0.186  Sum_probs=286.4

Q ss_pred             CCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCC
Q 012238           64 MAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD  143 (467)
Q Consensus        64 ~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~  143 (467)
                      ..+++++..+.+..++.  ++.|||+.|.+    ..++ ++.+.+++.+.+.... ..|.+..|.+++|+++++++...+
T Consensus         9 ~~~~~~~~~~~~~~~~~--~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~~g~~~l~~~la~~~~~~~   80 (389)
T 1gd9_A            9 LVSASEIRKLFDIAAGM--KDVISLGIGEP----DFDT-PQHIKEYAKEALDKGL-THYGPNIGLLELREAIAEKLKKQN   80 (389)
T ss_dssp             HSCCCHHHHHHHHHHTC--SSCEECCCCSC----SSCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             hCChhHHHHHHHHHhhh--cCeEecCCCCC----CCCC-CHHHHHHHHHHHhCCC-CCCCCCCCcHHHHHHHHHHHHHHh
Confidence            34566677777666543  57999999987    3333 7889999988876543 679888899999999999986554


Q ss_pred             CcccccCc-eeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHH
Q 012238          144 NSVLKEQR-VATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD  222 (467)
Q Consensus       144 ~~~~~~~~-i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~  222 (467)
                      |..+++++ |++  |+||++++.++  +...+.+||+|++++|+|..+...++..|++++.+|++++.++.+|++.+++.
T Consensus        81 g~~~~~~~~v~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  156 (389)
T 1gd9_A           81 GIEADPKTEIMV--LLGANQAFLMG--LSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKY  156 (389)
T ss_dssp             CCCCCTTTSEEE--ESSTTHHHHHH--HTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHH
T ss_pred             CCCCCCCCeEEE--cCChHHHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHh
Confidence            55556788 999  99999999997  33345689999999999999999999999999999986434577999999999


Q ss_pred             HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecC
Q 012238          223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY  302 (467)
Q Consensus       223 l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  302 (467)
                      ++   ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+....++++++.|+
T Consensus       157 l~---~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~  231 (389)
T 1gd9_A          157 VT---DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA--RHYSIASLDGMFERTITVNGF  231 (389)
T ss_dssp             CC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTCGGGEEEEEES
T ss_pred             cC---cCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC--CCCCHhhccCCCCCEEEEecC
Confidence            87   4677888899999999999999999999999999999999999999887531  011121111113578999999


Q ss_pred             ccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 012238          303 SKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAG  382 (467)
Q Consensus       303 SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~  382 (467)
                      ||.++++|+|+||++   .++++++.            +.........+++.+.|.++..+|+....    .++++++++
T Consensus       232 sK~~~~~G~r~G~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~  292 (389)
T 1gd9_A          232 SKTFAMTGWRLGFVA---APSWIIER------------MVKFQMYNATCPVTFIQYAAAKALKDERS----WKAVEEMRK  292 (389)
T ss_dssp             TTTTTCGGGCCEEEE---CCHHHHHH------------HHHHHTTTTCSCCHHHHHHHHHHHTCHHH----HHHHHHHHH
T ss_pred             hhhcCCcccceEEEE---ECHHHHHH------------HHHHHhhhccCCCHHHHHHHHHHHhCCCc----chHHHHHHH
Confidence            999999999999996   67777777            55554444557788888888888876421    125778899


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCC--------C--eEEecc
Q 012238          383 RIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD--------G--RISLAG  446 (467)
Q Consensus       383 ~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~  446 (467)
                      +++++++.+.+.|+ ++|    +++..+.+|+|+|+.+     +. ++.+++++++||.+.+|        +  ||+++.
T Consensus       293 ~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~  367 (389)
T 1gd9_A          293 EYDRRRKLVWKRLN-EMG----LPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT  367 (389)
T ss_dssp             HHHHHHHHHHHHHH-HTT----CCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS
T ss_pred             HHHHHHHHHHHHHH-HcC----CeecCCCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC
Confidence            99999999999999 776    5677788899988754     33 34666665679999875        2  999998


Q ss_pred             CChhhHHHHHHHHHHHHHhc
Q 012238          447 LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       447 ~~~~~i~~~~~~l~~~l~~~  466 (467)
                       +++++++++++|.+++++.
T Consensus       368 -~~~~i~~~l~~l~~~~~~~  386 (389)
T 1gd9_A          368 -AYEKLEEAMDRMERVLKER  386 (389)
T ss_dssp             -CHHHHHHHHHHHHHHHHHT
T ss_pred             -CHHHHHHHHHHHHHHHHhc
Confidence             8999999999999998764

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=100.00  E-value=4.2e-43  Score=351.51  Aligned_cols=360  Identities=16%  Similarity=0.170  Sum_probs=282.0

Q ss_pred             CCCcccchHHHhhc--CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCC
Q 012238           66 PPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD  143 (467)
Q Consensus        66 ~~~~i~~~~~~~~~--~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~  143 (467)
                      +++++..+.+..++  ..+++.|||+.|.+    ..+. ++.+.+++.+.+..+ ...|.+..|..++|+++++++...+
T Consensus        11 ~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~~~   84 (388)
T 1j32_A           11 SPSMTLIIDAKAKAMKAEGIDVCSFSAGEP----DFNT-PKHIVEAAKAALEQG-KTRYGPAAGEPRLREAIAQKLQRDN   84 (388)
T ss_dssp             CCCSSTTTHHHHHHHHTTTCCCEECCCSSC----SSCC-CHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCCCEEECCCCCC----CCCC-CHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHhc
Confidence            34445455443332  23457999999987    3443 678899988887554 3679888899999999999987655


Q ss_pred             CcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHH
Q 012238          144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI  223 (467)
Q Consensus       144 ~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l  223 (467)
                      |..+++++|++  |+|+++++.++  +...+.+||+|++++|+|..+...++..|++++.++.+++.++.+|++.+++.+
T Consensus        85 g~~~~~~~v~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l  160 (388)
T 1j32_A           85 GLCYGADNILV--TNGGKQSIFNL--MLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI  160 (388)
T ss_dssp             CCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHC
T ss_pred             CCCCChhhEEE--cCCHHHHHHHH--HHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhc
Confidence            66666889999  99999999998  344467999999999999999999999999999999854446789999999998


Q ss_pred             HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEecC
Q 012238          224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSY  302 (467)
Q Consensus       224 ~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~  302 (467)
                      +   ++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++...  .++..+.. ..++++++.|+
T Consensus       161 ~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~  235 (388)
T 1j32_A          161 T---PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQH--LSIGAASPEAYERSVVCSGF  235 (388)
T ss_dssp             C---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC--CCGGGSCHHHHHTEEEEEES
T ss_pred             C---cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC--CCHHHccccccCCEEEEeec
Confidence            7   467888889999999999999999999999999999999999999988753211  11111111 12468999999


Q ss_pred             ccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 012238          303 SKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAG  382 (467)
Q Consensus       303 SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~  382 (467)
                      ||.++++|+|+||++   .++++++.            +.........+++.+.|.++..+|...      .+++++.++
T Consensus       236 sK~~~~~G~r~G~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~  294 (388)
T 1j32_A          236 AKTYAMTGWRVGFLA---GPVPLVKA------------ATKIQGHSTSNVCTFAQYGAIAAYENS------QDCVQEMLA  294 (388)
T ss_dssp             TTTTTCTTTCCEEEE---CCHHHHHH------------HHHHHHTTTCSCCHHHHHHHHHHHHSC------SHHHHHHHH
T ss_pred             hhccCCcccceEEEE---eCHHHHHH------------HHHHHhhcccCCCHHHHHHHHHHHhCC------cHHHHHHHH
Confidence            999999999999996   77877777            555544445667788888877777532      133667888


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCC------C--eEEeccCC
Q 012238          383 RIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD------G--RISLAGLS  448 (467)
Q Consensus       383 ~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~~  448 (467)
                      +++++++++.+.|+ +++   ++++..+.+++|+|+.+     +. ++.+.+++++||.+.+|      +  ||+++. +
T Consensus       295 ~~~~~~~~l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~-~  369 (388)
T 1j32_A          295 AFAERRRYMLDALN-AMP---GLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYAT-D  369 (388)
T ss_dssp             HHHHHHHHHHHHHH-TCT---TCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCS-C
T ss_pred             HHHHHHHHHHHHHh-hCC---CCcccCCCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecC-C
Confidence            99999999999998 762   16777888899988744     33 34566666579999886      2  999986 8


Q ss_pred             hhhHHHHHHHHHHHHHhc
Q 012238          449 LAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       449 ~~~i~~~~~~l~~~l~~~  466 (467)
                      ++++++++++|+++++++
T Consensus       370 ~~~i~~~~~~l~~~l~~~  387 (388)
T 1j32_A          370 LDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999998865

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.6e-43  Score=361.63  Aligned_cols=381  Identities=17%  Similarity=0.183  Sum_probs=283.2

Q ss_pred             CCCCCCCcccchHHHhhcC--CCC-----CcEEecCcccCCCCCCCC---------------------chHHHHHHHHHH
Q 012238           62 VTMAPPDPILGVSEAFKAD--TDE-----KKLNLGVGAYRTEELQPY---------------------VLDVVKKAENLM  113 (467)
Q Consensus        62 ~~~~~~~~i~~~~~~~~~~--~~~-----~~i~l~~G~~~d~~~~p~---------------------~~~~v~~a~~~~  113 (467)
                      +.++-.+++...++++.+.  ++.     ++|++.+|.|... +..+                     .|..+.++..+.
T Consensus        35 ~~y~~rg~~~~~a~~~~~~~~~g~~~~f~~~i~~nig~p~~~-~~~~~~~~r~~l~l~~~p~~~~~~~~P~~~~~~~~~~  113 (498)
T 3ihj_A           35 VEYAVRGPIVLKAGEIELELQRGIKKPFTEVIRANIGDAQAM-GQQPITFLRQVMALCTYPNLLDSPSFPEDAKKRARRI  113 (498)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHTTCCCSSSSCBCCC-----------CCHHHHHHHHHHHCGGGGGCSSSCHHHHHHHHHH
T ss_pred             hhhhhcCHHHHHHHHHHHHHhccCCCchhhhhhcCCcCcccc-cCCcchHHHHHHHHhcCccccCcccCCHHHHHHHHHH
Confidence            3444456666666666543  233     8999999988221 2111                     133334444555


Q ss_pred             Hhc--C-CCCcCCCCcchHHHHHHHHHHHhCCC-CcccccCceeeeecCCchhHHHHHHHHHHHhCCCC----EEEEcCC
Q 012238          114 LER--G-ENKEYLPIEGLAAFNKVTAELLFGAD-NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA----KVLISSP  185 (467)
Q Consensus       114 ~~~--~-~~~~Y~~~~G~~~lr~aia~~l~~~~-~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd----~Vlv~~P  185 (467)
                      +..  + ....|.+..|.+++|+++++++...+ |..+++++|++  |+|+++++.++  +...+.+||    .|+++.|
T Consensus       114 l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~--t~G~~~ai~~~--~~~l~~~gd~~~d~Vlv~~p  189 (498)
T 3ihj_A          114 LQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYL--TTGASDGISTI--LKILVSGGGKSRTGVMIPIP  189 (498)
T ss_dssp             HHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEE--ESSHHHHHHHH--HHHHCCCCGGGSEEEEEEES
T ss_pred             HHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEE--cCCHHHHHHHH--HHHHcCCCCCCCCEEEEeCC
Confidence            533  1 23679999999999999999998766 47778999999  99999999998  333466765    9999999


Q ss_pred             CCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCC--CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 012238          186 TWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG--GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNH  263 (467)
Q Consensus       186 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~--~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~  263 (467)
                      +|+.|...++..|++++.++++++.+|++|++.|++.+++...  +++++++++||||||.+++.+++++|+++|++||+
T Consensus       190 ~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~  269 (498)
T 3ihj_A          190 QYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKL  269 (498)
T ss_dssp             CCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred             CchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCc
Confidence            9999999999999999999997666889999999999985211  57888888999999999999999999999999999


Q ss_pred             eeEEeccCCCCCCCCCCCChhHHHHHHh-------cCCeEEEEecCccCc-ccCCCccceEEEecCCHHHHhhhhhhhHH
Q 012238          264 IPFFDVAYQGFASGSLDNDASSVRLFAT-------RGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARCCEVAVI  335 (467)
Q Consensus       264 ~li~Deay~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~  335 (467)
                      +||+||+|.++.+++. ....++..+..       ...++++++||||.| |++|+|+||++++.+++++++.       
T Consensus       270 ~li~De~y~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~-------  341 (498)
T 3ihj_A          270 FLLADEVYQDNVYSPD-CRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQ-------  341 (498)
T ss_dssp             EEEEECTTTTCBCCTT-CCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHH-------
T ss_pred             EEEEEcCccccccCCC-CCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHH-------
Confidence            9999999999988632 12223333322       224689999999999 8999999999754578888887       


Q ss_pred             HHHHHHHhhccCccCCCchHHHHHHHHHhCCh----hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC
Q 012238          336 QVKSQLKRLARPMYSNPPVHGARIVANVVGNP----ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ  411 (467)
Q Consensus       336 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~  411 (467)
                           +..... .+.+++.++|.++..+++++    .....|.++++.++++++++++++.+.|+ ++.  + +++.+++
T Consensus       342 -----l~~~~~-~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~-~~~--g-~~~~~p~  411 (498)
T 3ihj_A          342 -----LVKLLS-VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFN-QVP--G-IHCNPLQ  411 (498)
T ss_dssp             -----HHHHHH-HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-TST--T-EECCCCC
T ss_pred             -----HHHHHh-ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC--C-cEecCCC
Confidence                 444433 35677888999998888752    23445566678899999999999999999 762  2 7888999


Q ss_pred             cceEEecCC---------------CHH-H-HHHHHHcccEEEeCC-------C----eEEeccCChhhHHHHHHHHHHHH
Q 012238          412 IGMFSFTGL---------------NKA-Q-SDNMTNKWHVYMTKD-------G----RISLAGLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       412 ~g~f~~~~l---------------~~~-~-~~~ll~~~gI~v~~g-------g----Ris~~~~~~~~i~~~~~~l~~~l  463 (467)
                      +|+|+|+.+               +.+ + +.++++++||.+.||       |    ||+|+. +++++++++++|.+++
T Consensus       412 gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~-~~e~l~~~i~~L~~~~  490 (498)
T 3ihj_A          412 GAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILP-PVEKLKTVLQKVKDFH  490 (498)
T ss_dssp             BSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCS-CHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHH
Confidence            999999632               222 2 577888889999885       2    999974 8899999999999988


Q ss_pred             Hhc
Q 012238          464 HNV  466 (467)
Q Consensus       464 ~~~  466 (467)
                      +++
T Consensus       491 ~~~  493 (498)
T 3ihj_A          491 INF  493 (498)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=100.00  E-value=3.6e-43  Score=352.80  Aligned_cols=339  Identities=14%  Similarity=0.147  Sum_probs=275.5

Q ss_pred             CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcc-cccC-ceeeeec
Q 012238           80 DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSV-LKEQ-RVATVQG  157 (467)
Q Consensus        80 ~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~-~~~~-~i~~~~t  157 (467)
                      +.++++|||+.|.+    ..+. ++.+.+++.+.+..  ...|.+..|.+++|+++++++...+|.. ++++ +|++  |
T Consensus        27 ~~g~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~--~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~--t   97 (396)
T 3jtx_A           27 PEGMEAVPLHIGEP----KHPT-PKVITDALTASLHE--LEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILP--V   97 (396)
T ss_dssp             CTTCCCEECSCCSC----CSCC-CHHHHHHHHHTGGG--GGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEE--E
T ss_pred             ccCCCeEEeCCcCC----CCCC-CHHHHHHHHHHhhh--ccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEE--c
Confidence            34568999999987    4554 78899999887753  3779888899999999999997766665 6788 9999  9


Q ss_pred             CCchhHHHHHHHHHHHhCCC-----CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEE
Q 012238          158 LSGTGSLRLAAALIERYFPG-----AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (467)
Q Consensus       158 ~ggt~al~l~~~~l~~~~~g-----d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~  232 (467)
                      +|+++++.++  +...+.+|     |+|+++.|+|..+...++..|++++.+++ +++++.+|++.+++.++   +++++
T Consensus        98 ~g~~~al~~~--~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~g~~~d~~~l~~~~~---~~~~~  171 (396)
T 3jtx_A           98 LGSREALFSF--VQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANC-PAPSFNPDWRSISEEVW---KRTKL  171 (396)
T ss_dssp             SSHHHHHHHH--HHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEEC-CTTTCCCCGGGSCHHHH---HTEEE
T ss_pred             CCcHHHHHHH--HHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeec-CCCCCccCHHHHHHhhc---cCcEE
Confidence            9999999998  44446686     79999999999999999999999999998 45677889999999998   47788


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH---HhcCCeEEEEecCccCcccC
Q 012238          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF---ATRGMELLVAQSYSKNLGLY  309 (467)
Q Consensus       233 i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~S~SK~~~~~  309 (467)
                      +++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. .........   ....++++++.||||.|+++
T Consensus       172 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~  250 (396)
T 3jtx_A          172 VFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGN-KPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVP  250 (396)
T ss_dssp             EEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTC-CCCCHHHHHHHTTCCCTTEEEEEESTTTSSCG
T ss_pred             EEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCchHHhhhhhcccccCcEEEEeccccccCCc
Confidence            88899999999999999999999999999999999999999987641 111111111   11256899999999999999


Q ss_pred             CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012238          310 AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ  389 (467)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~  389 (467)
                      |+|+||++   +++++++.            +.........+++.+.|.++..+|.+.       +++++.+++++++++
T Consensus       251 G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~  308 (396)
T 3jtx_A          251 GLRSGFVA---GDAELLKN------------FLLYRTYHGSAMSIPVQRASIAAWDDE-------QHVIDNRRLYQEKFE  308 (396)
T ss_dssp             GGCCEEEE---ECHHHHHH------------HHHHHHHHTCCCCHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHH
T ss_pred             ccceEEEE---eCHHHHHH------------HHHHHhhcccCCCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHH
Confidence            99999995   78888877            544444445577888888888888653       336788899999999


Q ss_pred             HHHHHhhhccCCCCCcccccCCcceEEecCCC----HHHHHHHHHcccEEEeCC--------------C--eEEeccCCh
Q 012238          390 KLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----KAQSDNMTNKWHVYMTKD--------------G--RISLAGLSL  449 (467)
Q Consensus       390 ~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~----~~~~~~ll~~~gI~v~~g--------------g--Ris~~~~~~  449 (467)
                      .+.+.|+ +.     +.+..+.+|+|+|+.+.    .++++++++++||.+.||              +  ||+++. ++
T Consensus       309 ~l~~~l~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~-~~  381 (396)
T 3jtx_A          309 RVIPILQ-QV-----FDVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA-DV  381 (396)
T ss_dssp             HHHHHHT-TT-----SCCCCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS-CH
T ss_pred             HHHHHHH-hc-----CCccCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC-CH
Confidence            9999998 64     24567888999998664    456777877789999774              2  999988 89


Q ss_pred             hhHHHHHHHHHHHH
Q 012238          450 AKCEYLADAIIDSY  463 (467)
Q Consensus       450 ~~i~~~~~~l~~~l  463 (467)
                      +++++++++|++++
T Consensus       382 ~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          382 ATCVKAAEDIVSLY  395 (396)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999875

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=100.00  E-value=5.2e-44  Score=360.60  Aligned_cols=360  Identities=13%  Similarity=0.078  Sum_probs=283.6

Q ss_pred             CCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCC
Q 012238           64 MAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD  143 (467)
Q Consensus        64 ~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~  143 (467)
                      ..+++.+..+.+.   ..++++|+|+.|.+    .+++ ++.+.+++.+.+.......|.+..|.+++|+++++++...+
T Consensus         7 ~~~~~~~~~~~~~---~~~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~   78 (410)
T 3e2y_A            7 GLDSNVWVEFTKL---AADPSVVNLGQGFP----DISP-PSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIY   78 (410)
T ss_dssp             TCCCCHHHHTTTT---TTSTTSEECSSCCC----CSCC-CHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             cCCccHHHHHHHH---hcCCCeEEecCCCC----CCCC-CHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHh
Confidence            3344444443332   23458999999987    5554 78999999988865444689888899999999999998766


Q ss_pred             Cccccc-CceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeec---------CCCCC
Q 012238          144 NSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD---------PKTVG  213 (467)
Q Consensus       144 ~~~~~~-~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~---------~~~~~  213 (467)
                      +..+++ ++|++  |+|+++++.++  +...+.+||+|+++.|+|..|...++..|.+++.+++..         +.++.
T Consensus        79 ~~~~~~~~~i~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~  154 (410)
T 3e2y_A           79 QRQIDPNEEILV--AVGAYGSLFNS--IQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWT  154 (410)
T ss_dssp             TSCCCTTTSEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEE
T ss_pred             CCCCCCCCCEEE--eCCcHHHHHHH--HHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCc
Confidence            766777 79999  99999999998  444567999999999999999999999999999998862         23556


Q ss_pred             CChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012238          214 LDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (467)
Q Consensus       214 ~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (467)
                      +|++.+++.++   ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+....
T Consensus       155 ~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~  229 (410)
T 3e2y_A          155 FDPRELESKFS---SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGH--THVKIATLPGMW  229 (410)
T ss_dssp             CCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTCG
T ss_pred             CCHHHHHhhcC---CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC--CCCCHHHcCCcc
Confidence            89999998886   5788889999999999999999999999999999999999999999987542  111222222233


Q ss_pred             CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChh-hHHH
Q 012238          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPA-LFDE  372 (467)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~  372 (467)
                      ++++++.||||.+|++|+|+||++   .++++++.            +.........+++.+.|.++..+|.+.. ....
T Consensus       230 ~~~i~~~S~sK~~g~~G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  294 (410)
T 3e2y_A          230 ERTITIGSAGKTFSVTGWKLGWSI---GPAHLIKH------------LQTVQQNSFYTCATPLQAALAEAFWIDIKRMDD  294 (410)
T ss_dssp             GGEEEEEEHHHHSSCGGGCCEEEE---CCHHHHHH------------HHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTS
T ss_pred             CeEEEEecchhhcCCCCceEEEEE---ECHHHHHH------------HHHHHHhhccCCChHHHHHHHHHHHhhhccccc
Confidence            688999999999999999999996   78888777            5555444455678888888887775310 0001


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC----------------HHHHHHHHHcccEEE
Q 012238          373 WKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----------------KAQSDNMTNKWHVYM  436 (467)
Q Consensus       373 ~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~----------------~~~~~~ll~~~gI~v  436 (467)
                      +.+++++++++++++++.+.+.|+ ++|    +.+..+++|+|+|+++.                .+++.++++++||.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v  369 (410)
T 3e2y_A          295 PECYFNSLPKELEVKRDRMVRLLN-SVG----LKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTA  369 (410)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHH-TTT----CEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEEC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HCC----CeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEE
Confidence            133467888999999999999999 876    57788899999987542                166778888889999


Q ss_pred             eCC-------------C--eEEeccCChhhHHHHHHHHHH
Q 012238          437 TKD-------------G--RISLAGLSLAKCEYLADAIID  461 (467)
Q Consensus       437 ~~g-------------g--Ris~~~~~~~~i~~~~~~l~~  461 (467)
                      .||             +  |||++. +++++++++++|++
T Consensus       370 ~~g~~f~~~~~~~~~~~~iRis~~~-~~e~l~~~l~~l~~  408 (410)
T 3e2y_A          370 IPVSAFCDSKSKPHFEKLVRFCFIK-KDSTLDAAEEIFRA  408 (410)
T ss_dssp             EEGGGGSCTTTHHHHTTEEEEECCC-CHHHHHHHHHHHHT
T ss_pred             eCchhhCCCCCCCCCCCEEEEEEcC-CHHHHHHHHHHHHh
Confidence            875             2  999998 99999999999875

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.3e-43  Score=358.35  Aligned_cols=344  Identities=13%  Similarity=0.145  Sum_probs=265.7

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc-CceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~gg  160 (467)
                      +.++|||+.|.+    ..+ .++.+.+++.+.+.......|.+..|..++|+++++++...+|..+++ ++|++  |+|+
T Consensus        36 g~~~idl~~g~~----~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~--t~g~  108 (412)
T 2x5d_A           36 GEDIIDLSMGNP----DGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIV--TIGS  108 (412)
T ss_dssp             TCCCEECSSCCC----CSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEE--ESCH
T ss_pred             CCCEEecCCCCC----CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEE--cCCh
Confidence            458999999987    333 378899998887754323679888899999999999986544555567 69999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      ++++.++  +...+.+||+|+++.|+|..+...++..|++++.++++++.++.+|++.+++.++   ++++++++++|||
T Consensus       109 ~~a~~~~--~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~---~~~~~v~l~~p~n  183 (412)
T 2x5d_A          109 KEGLAHL--MLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESI---PKPRMMILGFPSN  183 (412)
T ss_dssp             HHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEE---SCCSEEEEESSCT
T ss_pred             HHHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcc---cCceEEEECCCCC
Confidence            9999998  3344679999999999999999999999999999998533244578899988886   4566777899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      |||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+....++++++.|+||.+|++|+|+||++   
T Consensus       184 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~---  258 (412)
T 2x5d_A          184 PTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGW--KAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMV---  258 (412)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEE---
T ss_pred             CCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCChhhccCccCcEEEEecCccccCCcccceEEEE---
Confidence            999999999999999999999999999999999987421  111221221113578999999999999999999996   


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      .++++++.            +.........+++.+.|.++..+|+..      .+++++.+++++++++.+.+.|+ ++|
T Consensus       259 ~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~g  319 (412)
T 2x5d_A          259 GNPELVSA------------LARIKSYHDYGTFTPLQVAAIAALEGD------QQCVRDIARQYQQRRDVLVKGLR-EAG  319 (412)
T ss_dssp             ECHHHHHH------------HHHHHHHHCCCCCHHHHHHHHHHHHSC------SHHHHHHHHHHHHHHHHHHHHHH-HHT
T ss_pred             cCHHHHHH------------HHHHHhhhccCCCHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHHHHHH-HCC
Confidence            67888777            444333334567788888888888653      12367888999999999999999 776


Q ss_pred             CCCCcccccCCcceEEecCC-------CH-HHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHH
Q 012238          401 SGKDWSFILRQIGMFSFTGL-------NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       401 ~~~~~~~~~~~~g~f~~~~l-------~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                          +.+..+++|+|+|+.+       +. ++++++++++||.+.+|        +  ||+++. +++++++++++|.++
T Consensus       320 ----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~  394 (412)
T 2x5d_A          320 ----WMVENPKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE-NRDRLRQAVRGIKAM  394 (412)
T ss_dssp             ----CCCCCCSBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHH
T ss_pred             ----CEecCCCeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHH
Confidence                5677788899988754       23 34666767679999875        2  999998 899999999999999


Q ss_pred             HHhc
Q 012238          463 YHNV  466 (467)
Q Consensus       463 l~~~  466 (467)
                      ++++
T Consensus       395 l~~~  398 (412)
T 2x5d_A          395 FRAD  398 (412)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            8754

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=100.00  E-value=9e-43  Score=355.85  Aligned_cols=360  Identities=13%  Similarity=0.150  Sum_probs=279.1

Q ss_pred             CCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCC
Q 012238           65 APPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGA  142 (467)
Q Consensus        65 ~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~  142 (467)
                      .+++++.++.+...   .+++|||+.|.| +.+.+  +++.+.+++.+.+...  ....|.+..|.++||+++++++...
T Consensus        61 ~~~s~~~~~~~~~~---~~~~i~l~~g~p-~~~~~--p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~  134 (448)
T 3aow_A           61 MRASEVRELLKLVE---TSDIISLAGGLP-NPKTF--PKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKR  134 (448)
T ss_dssp             CCCCHHHHHHHHHH---TSSSEECCCCCC-CGGGS--CHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHhcc---CCCcEeCCCCCC-CchhC--CHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHh
Confidence            34555555554433   357999999988 22222  3778888888877542  1257988899999999999998544


Q ss_pred             CCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHH
Q 012238          143 DNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD  222 (467)
Q Consensus       143 ~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~  222 (467)
                      +|.. ++++|++  |+|+++++.++  +...+.+||+|+++.|+|..+...++..|++++.+|+++ +  ++|++.|++.
T Consensus       135 ~g~~-~~~~v~~--t~G~~~al~~~--~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~--g~d~~~L~~~  206 (448)
T 3aow_A          135 YGIS-QDNDIMI--TSGSQQALDLI--GRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDD-E--GMKVEILEEK  206 (448)
T ss_dssp             HCCC-TTSEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-T--EECHHHHHHH
T ss_pred             cCcC-ChhhEEE--eCcHHHHHHHH--HHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCC-C--CCCHHHHHHH
Confidence            4554 5789999  99999999998  333467999999999999999999999999999999853 2  4999999999


Q ss_pred             HH----cCCCCcEEE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012238          223 IK----AAPGGSFIL-LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (467)
Q Consensus       223 l~----~~~~~~~~i-~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  297 (467)
                      ++    +. .+++++ ++++||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+ +..++++
T Consensus       207 l~~~~~~~-~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~--~~~~~~~~-~~~~~vi  282 (448)
T 3aow_A          207 LKELKSQG-KKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGN--PEKKIKAL-DNEGRVI  282 (448)
T ss_dssp             HHHHHHTT-CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSC--CCCCTGGG-CTTSCEE
T ss_pred             HhhhhccC-CCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC--CCcCHHhc-CCCCCEE
Confidence            87    32 356665 6899999999999999999999999999999999999999987531  11112111 2345799


Q ss_pred             EEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l  377 (467)
                      ++.||||.++ +|+|+||++   .++++++.            +.........+++.+.|.++..+|++..    |.+++
T Consensus       283 ~~~S~SK~~~-~GlriG~v~---~~~~l~~~------------l~~~~~~~~~~~~~~~q~a~~~~L~~~~----~~~~~  342 (448)
T 3aow_A          283 YLGTFSKILA-PGFRIGWMV---GDPGIIRK------------MEIAKQSTDLCTNVFGQVVAWRYVDGGY----LEKHI  342 (448)
T ss_dssp             EEEESTTTTC-GGGCCEEEE---ECHHHHHH------------HHHHHHHHHSSCCHHHHHHHHHHHHTTH----HHHHH
T ss_pred             EEccchhhcc-ccccEEEEE---eCHHHHHH------------HHHHHHHhcCCCCHHHHHHHHHHHHhCC----HHHHH
Confidence            9999999999 999999996   67888877            4443333344668888999888887642    34568


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC----CH-HHHHHHHHcccEEEeCC----------C--
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKD----------G--  440 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~g----------g--  440 (467)
                      ++++++++++++.+.+.|+ +. +|..+.+..|.+|+|+|+.+    +. +++++++++ ||.+.||          +  
T Consensus       343 ~~~~~~~~~~~~~l~~~L~-~~-~~~g~~~~~p~~g~~~~v~~~~~~~~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~i  419 (448)
T 3aow_A          343 PEIRKFYKPRRDAMLEALE-EF-MPEGVKWTKPEGGMFIWVTLPDGIDSKKMLERAIKK-GVAYVPGEAFYAHRDVKNTM  419 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HH-CCTTCEECCCSBSSEEEEECSTTCCHHHHHHHHHHT-TEECEEGGGGSTTCCCCSEE
T ss_pred             HHHHHHHHHHHHHHHHHHH-Hh-CCCCeEEeCCCccEEEEEEcCCCCCHHHHHHHHHHC-CcEEEcchhhcCCCCCCCEE
Confidence            8899999999999999998 64 12125677788999999865    33 456677765 9999875          2  


Q ss_pred             eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          441 RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       441 Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                      ||+++..+++++++++++|.+++++
T Consensus       420 Rls~~~~~~e~i~~~~~~L~~~l~~  444 (448)
T 3aow_A          420 RLNFTYVDEDKIMEGIKRLAETIKE  444 (448)
T ss_dssp             EEECSSSCTHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            9999876789999999999999875

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=100.00  E-value=4.2e-43  Score=352.68  Aligned_cols=341  Identities=16%  Similarity=0.213  Sum_probs=270.5

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC---CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~---~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      ++++|||+.|.+    ..++ ++.+.+++.+.+....   ...|.+..|.+++|+++++++...+|..+++++|++  |+
T Consensus        34 ~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~--~~  106 (398)
T 3ele_A           34 KENVYDFSIGNP----SIPA-PQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYM--TM  106 (398)
T ss_dssp             GGGCEECCSCCC----CSCC-CHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ES
T ss_pred             CCCeEEeecCCC----CCCC-CHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEE--cc
Confidence            357999999976    4443 7889999988875431   367988899999999999999776676677899999  99


Q ss_pred             CchhHHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q 012238          159 SGTGSLRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~  237 (467)
                      |+++++.++  +...+.+| |+|+++.|+|..|...++..|++++.+|++ ++++++|++.+++.++   ++++++++++
T Consensus       107 g~~~al~~~--~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~---~~~~~v~~~~  180 (398)
T 3ele_A          107 GAAASLSIC--FRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPAD-TEHFQIDFDALEERIN---AHTRGVIINS  180 (398)
T ss_dssp             SHHHHHHHH--HHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCC-TTTSSCCHHHHHHTCC---TTEEEEEECS
T ss_pred             CHHHHHHHH--HHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecC-CcCCcCCHHHHHHHhC---cCCCEEEEcC
Confidence            999999998  44446799 999999999999999999999999999985 3468899999999887   5788999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHh------cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCC
Q 012238          238 AHNPTGIDPTPEQWEKIADVIQE------KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (467)
Q Consensus       238 p~NPTG~~~~~~~l~~l~~~~~~------~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~  311 (467)
                      ||||||.+++.+++++|+++|++      ||+++|+||+|.++.+++....     ......+++++++|+||.++++|+
T Consensus       181 p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~-----~~~~~~~~~i~~~s~sK~~~~~G~  255 (398)
T 3ele_A          181 PNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVP-----FVTKYYDNTLVCYSYSKSLSLPGE  255 (398)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCC-----CGGGTCSSEEEEEESTTTSSCTTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcC-----ChHhhcCCeEEEEehhhcCCCccc
Confidence            99999999999999999999999      9999999999999987531111     122345689999999999999999


Q ss_pred             ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC-ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012238          312 RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP-MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQK  390 (467)
Q Consensus       312 RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~  390 (467)
                      |+||++   .++++++.      ..+...+...... .+.+++.+.|.++..++.+..           .++++++++++
T Consensus       256 r~G~~~---~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----------~~~~~~~~~~~  315 (398)
T 3ele_A          256 RIGYVL---VPDEVYDK------AELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG-----------DINAYKENRDL  315 (398)
T ss_dssp             CCEEEE---CCTTSTTH------HHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC-----------CHHHHHHHHHH
T ss_pred             eeEEEE---EcchhhhH------HHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH-----------HHHHHHHHHHH
Confidence            999996   55553321      0022223322222 245677788888877776542           34677888999


Q ss_pred             HHHHhhhccCCCCCcccccCCcceEEecCC---CHHHHHHHHHcccEEEeCC------C--eEEeccCChhhHHHHHHHH
Q 012238          391 LFDSLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYLADAI  459 (467)
Q Consensus       391 l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~g------g--Ris~~~~~~~~i~~~~~~l  459 (467)
                      +.+.|+ ++|    +.+..+.+++|+|+.+   +.+.+.+.+.++||.+.+|      +  ||+++. +++++++++++|
T Consensus       316 l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~~-~~e~i~~~l~~l  389 (398)
T 3ele_A          316 LYEGLT-RIG----YHCFKPDGAFYMFVKALEDDSNAFCEKAKEEDVLIVAADGFGCPGWVRISYCV-DREMIKHSMPAF  389 (398)
T ss_dssp             HHHHHH-HHT----CCEECCSBSSEEEEECSSSCHHHHHHHHHTTTEECEESGGGTCTTEEEEECCS-CHHHHHHHHHHH
T ss_pred             HHHHHH-HcC----CeecCCCeeEEEEEEcCCCCHHHHHHHHHHCCEEEeCccccCCCCeEEEEecC-CHHHHHHHHHHH
Confidence            999998 776    5778889999999865   3444444556679999987      2  999985 899999999999


Q ss_pred             HHHHHhc
Q 012238          460 IDSYHNV  466 (467)
Q Consensus       460 ~~~l~~~  466 (467)
                      .++++++
T Consensus       390 ~~~l~~~  396 (398)
T 3ele_A          390 EKIYKKY  396 (398)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998875

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=1.8e-42  Score=347.31  Aligned_cols=356  Identities=17%  Similarity=0.186  Sum_probs=282.2

Q ss_pred             CCCCCcccchHHHhhcC--CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhC
Q 012238           64 MAPPDPILGVSEAFKAD--TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFG  141 (467)
Q Consensus        64 ~~~~~~i~~~~~~~~~~--~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~  141 (467)
                      ..+++.+.++.+...+.  .+++.|||+.|.+    ..+. ++.+.+++.+.+.... ..|.+..|.+++|+++++++..
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~~g~~~lr~~la~~~~~   93 (389)
T 1o4s_A           20 EIPISKTMELDAKAKALIKKGEDVINLTAGEP----DFPT-PEPVVEEAVRFLQKGE-VKYTDPRGIYELREGIAKRIGE   93 (389)
T ss_dssp             HSCCCSSHHHHHHHHHHHHTTCCCEECCCSSC----SSCC-CHHHHHHHHHHHTTCC-CCCCCTTCCHHHHHHHHHHHHH
T ss_pred             hcCccHHHHHHHHHHHHHhcCCCEEEccCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHH
Confidence            34555666665554321  3458999999987    3443 7889999988876543 5788778999999999999865


Q ss_pred             CCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHH
Q 012238          142 ADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA  221 (467)
Q Consensus       142 ~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~  221 (467)
                      .+|..+++++|++  |+|+++++.++  +...+.+||+|++++|+|..+...++..|++++.+|.++++++.+|++.+++
T Consensus        94 ~~g~~~~~~~v~~--~~g~t~al~~~--~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  169 (389)
T 1o4s_A           94 RYKKDISPDQVVV--TNGAKQALFNA--FMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEG  169 (389)
T ss_dssp             HHTCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHH
T ss_pred             HhCCCCCHHHEEE--ecCHHHHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHH
Confidence            5555566889999  99999999998  3334679999999999999999999999999999998543467899999999


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEec
Q 012238          222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (467)
Q Consensus       222 ~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  301 (467)
                      .++   ++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++   ...++..+....++++++.|
T Consensus       170 ~l~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g---~~~~~~~~~~~~~~~i~~~s  243 (389)
T 1o4s_A          170 LLV---GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD---EFTSILDVSEGFDRIVYING  243 (389)
T ss_dssp             TCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS---CCCCHHHHCSSSTTEEEEEE
T ss_pred             hcc---cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCC---CCCCHhhcCCCCCcEEEEee
Confidence            886   467888889999999999999999999999999999999999999988753   11123233212467999999


Q ss_pred             CccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 012238          302 YSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMA  381 (467)
Q Consensus       302 ~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~  381 (467)
                      +||.+|++|+|+||++   .++++++.            +.........+++.+.|.++..+|.+.         +++.+
T Consensus       244 ~sK~~~~~G~r~G~l~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~---------~~~~~  299 (389)
T 1o4s_A          244 FSKSHSMTGWRVGYLI---SSEKVATA------------VSKIQSHTTSCINTVAQYAALKALEVD---------NSYMV  299 (389)
T ss_dssp             STTTTTCGGGCCEEEE---CCHHHHHH------------HHHHHHHHTCSCCHHHHHHHHHHTTCC---------CHHHH
T ss_pred             chhhcCCcccceEEEE---eCHHHHHH------------HHHHhhhcccCCCHHHHHHHHHHHhcc---------HHHHH
Confidence            9999999999999996   67877776            444443334567778888888888764         34677


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC--CH-HHHHHHHHcccEEEeCC------C--eEEeccCChh
Q 012238          382 GRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--NK-AQSDNMTNKWHVYMTKD------G--RISLAGLSLA  450 (467)
Q Consensus       382 ~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~~~~  450 (467)
                      ++++++++.+.+.|+ ++|    +++..+.+++|+|+.+  +. ++.+++++++||.+.+|      +  ||+++. +++
T Consensus       300 ~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~-~~~  373 (389)
T 1o4s_A          300 QTFKERKNFVVERLK-KMG----VKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT-SIE  373 (389)
T ss_dssp             HHHHHHHHHHHHHHH-HTT----CCCCCCSBSSEEEEECSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS-CHH
T ss_pred             HHHHHHHHHHHHHHH-hcC----CeeecCCcceEEEEeCCCCHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeC-CHH
Confidence            888899999999998 776    5666788899988765  34 45666765679999886      2  999997 899


Q ss_pred             hHHHHHHHHHHHHHh
Q 012238          451 KCEYLADAIIDSYHN  465 (467)
Q Consensus       451 ~i~~~~~~l~~~l~~  465 (467)
                      ++++++++|.+++++
T Consensus       374 ~l~~~l~~l~~~l~~  388 (389)
T 1o4s_A          374 RLTEALDRIEDFLNS  388 (389)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999998764

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=100.00  E-value=3.4e-43  Score=354.20  Aligned_cols=365  Identities=16%  Similarity=0.161  Sum_probs=276.4

Q ss_pred             CCCCCCcccchHHHhhcCCC-----CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHH
Q 012238           63 TMAPPDPILGVSEAFKADTD-----EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE  137 (467)
Q Consensus        63 ~~~~~~~i~~~~~~~~~~~~-----~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~  137 (467)
                      +..|++++....+.+..+..     ++.|||+.|.|   +++++ ++.+++++.+.+.......|.+..|..++++++++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~g~~---~~~~~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~   89 (407)
T 3nra_A           14 DNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDV---DAHEP-TPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAP   89 (407)
T ss_dssp             -------------CCTTTCCSCCCCSCCEETTSCCT---TTSCC-CTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHH
T ss_pred             CCCccHHHHHHhhhhHHHhhcCCCCCceeeecCcCC---CCCCC-cHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHH
Confidence            44455555444442222211     24799999987   13343 78889998888764333578888999999999999


Q ss_pred             HHhCCCCccccc-CceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeec----CCCC
Q 012238          138 LLFGADNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD----PKTV  212 (467)
Q Consensus       138 ~l~~~~~~~~~~-~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~----~~~~  212 (467)
                      ++....|..+++ ++|++  |+||++++.++  +...+.+||+|+++.|+|..+...++..|++++.+++..    ++++
T Consensus        90 ~l~~~~g~~~~~~~~i~~--~~g~~~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  165 (407)
T 3nra_A           90 RLAAFTGAPVDARDGLII--TPGTQGALFLA--VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRA  165 (407)
T ss_dssp             HHHHHHTSCCCTTTSEEE--ESHHHHHHHHH--HHTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSC
T ss_pred             HHHHHhCCCCCCCCcEEE--eCCcHHHHHHH--HHHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCC
Confidence            987666666655 69999  99999999997  333466999999999999999999999999999999831    3567


Q ss_pred             CCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-h
Q 012238          213 GLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-T  291 (467)
Q Consensus       213 ~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~  291 (467)
                      ++|++.+++.+++   +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+. .
T Consensus       166 ~~d~~~l~~~l~~---~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~--~~~~~~~~~~~  240 (407)
T 3nra_A          166 GLDLTGLEEAFKA---GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGA--SYTHLRAEAAV  240 (407)
T ss_dssp             CBCHHHHHHHHHT---TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTC--CCCCGGGCTTS
T ss_pred             CcCHHHHHHHHhh---CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCCChhhcCcc
Confidence            8999999999983   667888899999999999999999999999999999999999999887642  122221221 2


Q ss_pred             cCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHH
Q 012238          292 RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFD  371 (467)
Q Consensus       292 ~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~  371 (467)
                      ..++++++.||||.+|++|+|+||++   .++++++.            +.........+++.+.+.++..+|.+..   
T Consensus       241 ~~~~~i~~~s~sK~~g~~G~r~G~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~~---  302 (407)
T 3nra_A          241 DAENVVTIMGPSKTESLSGYRLGVAF---GSRAIIAR------------MEKLQAIVSLRAAGYSQAVLRGWFDEAP---  302 (407)
T ss_dssp             CGGGEEEEECSSSTTCCGGGCCEEEE---ECHHHHHH------------HHHHHHHHTSSSCHHHHGGGGGTTCCCT---
T ss_pred             cCCcEEEEeCcccccCCCeeeEEEEE---cCHHHHHH------------HHHHHhhhccCCChHHHHHHHHHHhccc---
Confidence            24578999999999999999999995   67888777            5544444455677788888777776431   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCCC-----
Q 012238          372 EWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKDG-----  440 (467)
Q Consensus       372 ~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~gg-----  440 (467)
                         +.+++.+++++++++.+.+.|+ +++   .+.+..+.+++|+|+.+     +. ++.+.+++++||.+.+|.     
T Consensus       303 ---~~~~~~~~~~~~~~~~l~~~L~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~  375 (407)
T 3nra_A          303 ---GWMEDRIARHQAIRDELLHVLR-GCE---GVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPH  375 (407)
T ss_dssp             ---THHHHHHHHHHHHHHHHHHHHH-TST---TCBCCCCSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTT
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHh-cCC---CceeccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCC
Confidence               2256777888899999999998 762   16777888889999854     23 456667677799998851     


Q ss_pred             -----eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          441 -----RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 -----Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                           ||+++. +++++++++++|.++++++
T Consensus       376 ~~~~iRis~~~-~~~~i~~~~~~l~~~~~~~  405 (407)
T 3nra_A          376 TADSVRLNFSQ-DHEAAVAAARRIVTLVERY  405 (407)
T ss_dssp             CTTBEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCC-CHHHHHHHHHHHHHHHHHh
Confidence                 999998 8999999999999998865

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=100.00  E-value=4.2e-43  Score=353.74  Aligned_cols=343  Identities=16%  Similarity=0.114  Sum_probs=272.2

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc-CceeeeecCC
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLS  159 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~g  159 (467)
                      .+.++|||+.|.+    ..+. ++.+.+++.+.+.......|.+..|.+++|+++++++...+|..+++ ++|++  |+|
T Consensus        45 ~g~~~idl~~g~~----~~~~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~--t~G  117 (404)
T 2o1b_A           45 GPLPLINMAVGIP----DGPT-PQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCI--LYG  117 (404)
T ss_dssp             CSSCCEECCCCSC----SSCC-CHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEE--ESS
T ss_pred             CCCCEEecCCcCC----CCCC-CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEE--cCC
Confidence            3456899999987    3333 67899998887743223568777899999999999986544555555 78999  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +++++.++  +...+.+||+|+++.|+|..+...++..|++++.++.++ +++.+|++.+++.++   ++++++++++|+
T Consensus       118 ~~~al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~---~~~~~v~l~~p~  191 (404)
T 2o1b_A          118 TKNGLVAV--PTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEP-PHYLPDWSKVDSQII---DKTKLIYLTYPN  191 (404)
T ss_dssp             HHHHHHHH--HHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCT-TTCCCCGGGSCHHHH---HHEEEEEECSSC
T ss_pred             cHHHHHHH--HHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCc-ccCcCCHHHHHHhhc---cCceEEEEcCCC
Confidence            99999998  344467999999999999999999999999999999853 456789999999987   467888889999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||.+++.+++++|+++|+++|++||+||+|.++.+++...+..   .+....++++++.||||.+|++|+|+||++  
T Consensus       192 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~---~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~--  266 (404)
T 2o1b_A          192 NPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSIL---ASENGKDVAIEIYSLSKGYNMSGFRVGFAV--  266 (404)
T ss_dssp             TTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGG---GSTTHHHHEEEEEESTTTTTCGGGCCEEEE--
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChh---hcCCCCCCEEEEEecchhccCchhheEeEe--
Confidence            999999999999999999999999999999999988753111111   111112468999999999999999999995  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                       .++++++.            +.........+++.+.|.++..+|++.      .+.+++.+++++++++.+.+.|+ ++
T Consensus       267 -~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~  326 (404)
T 2o1b_A          267 -GNKDMIQA------------LKKYQTHTNAGMFGALQDAAIYALNHY------DDFLEEQSNVFKTRRDRFEAMLA-KA  326 (404)
T ss_dssp             -ECHHHHHH------------HHHHHHHHCCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HT
T ss_pred             -cCHHHHHH------------HHHHHhhccCCCCHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence             67888777            444433334567788888888777542      23467888999999999999999 77


Q ss_pred             CCCCCcccccCCcceEEecCC----C-HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHHHH
Q 012238          400 KSGKDWSFILRQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       400 g~~~~~~~~~~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                      |    +++..+++|+|+|+.+    + .++++++++++||.+.+|        +  ||+++. +++++++++++|.++++
T Consensus       327 g----~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~e~l~~~l~~l~~~l~  401 (404)
T 2o1b_A          327 D----LPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL-DDQKLDEAAIRLTELAY  401 (404)
T ss_dssp             T----CCEECCCBSSEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS-CTTHHHHHHHHHHGGGG
T ss_pred             C----CeecCCCcceEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC-CHHHHHHHHHHHHHHHH
Confidence            6    5677788899998754    2 345677776679999886        2  999998 88999999999999887


Q ss_pred             hc
Q 012238          465 NV  466 (467)
Q Consensus       465 ~~  466 (467)
                      +.
T Consensus       402 ~~  403 (404)
T 2o1b_A          402 LY  403 (404)
T ss_dssp             GG
T ss_pred             hh
Confidence            64

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=100.00  E-value=5e-42  Score=350.58  Aligned_cols=346  Identities=14%  Similarity=0.131  Sum_probs=270.5

Q ss_pred             CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc----CCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238           80 DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER----GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (467)
Q Consensus        80 ~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (467)
                      ..++++|||++|.+    +.+. ++.|.+++.+.+..    .....|.+..|.++||+++++++.  +|..+++++|++ 
T Consensus        66 ~~~~~~i~l~~g~~----~~~~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~-  137 (449)
T 3qgu_A           66 NPDAKIISLGIGDT----TEPL-PKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFI-  137 (449)
T ss_dssp             CTTCCCEECSSCCC----CCCC-CHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEE-
T ss_pred             CCCCCEEEeeCCCC----CCCC-CHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEE-
Confidence            34568999999976    5554 78888888887752    234689888999999999999987  566777899999 


Q ss_pred             ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCC----------eEEeeeecCCCCCCChhhHHHHHHc
Q 012238          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP----------WSEYRYYDPKTVGLDFEGMIADIKA  225 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~----------~~~v~~~~~~~~~~d~~~l~~~l~~  225 (467)
                       |+|+++++.++   ...+.+||+|++++|+|..|...++..|++          ++.++++++.++..|++.+      
T Consensus       138 -t~G~~~al~~~---~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  207 (449)
T 3qgu_A          138 -SDGSKCDIARI---QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA------  207 (449)
T ss_dssp             -ESCHHHHHHHH---HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC------
T ss_pred             -ccCHHHHHHHH---HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc------
Confidence             99999999986   345789999999999999999999999998          9999986554555565432      


Q ss_pred             CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC
Q 012238          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (467)
Q Consensus       226 ~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (467)
                        ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+....++++++.||||.
T Consensus       208 --~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~  283 (449)
T 3qgu_A          208 --KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD--CPKTIYEIPGADEVAIETCSFSKY  283 (449)
T ss_dssp             --CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTT--SCSSGGGSTTGGGTEEEEEECSGG
T ss_pred             --CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCC--CCCCHhhccCCCCcEEEEecchhh
Confidence              3556777789999999999999999999999999999999999999987631  122222222224578999999999


Q ss_pred             cccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238          306 LGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  385 (467)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~  385 (467)
                      +|++|+|+||++   +++++++...    ..+...+.......+.+++.++|.++..+|.+..     .+++++++++++
T Consensus       284 ~g~~G~r~G~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~  351 (449)
T 3qgu_A          284 AGFTGVRLGWTV---VPKALKYANG----EPVHADWNRVMTTCFNGASNIVQAGGLACLQPEG-----LKEMNAMIKFYK  351 (449)
T ss_dssp             GTCTTCCCEEEE---CCTTCBCTTS----CBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHH-----HHHHHHHHHHHH
T ss_pred             cCCccceeEEEe---cCHHHHhhhh----hhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcC-----HHHHHHHHHHHH
Confidence            999999999996   6666654000    0011113333344456788889999888887532     244778899999


Q ss_pred             HHHHHHHHHhhhccCCCCCcccccCCcceEEecCC---C-HHHHHHHHHcccEEEeCC--------C--eEEeccCChhh
Q 012238          386 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---N-KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAK  451 (467)
Q Consensus       386 ~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---~-~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~  451 (467)
                      ++++++.+.|+ ++|    +++..+++++|+|+++   + .++++++++++||++.||        +  |||++. ++++
T Consensus       352 ~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~-~~e~  425 (449)
T 3qgu_A          352 ENAQILKTTFT-EMG----FSVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG-SREN  425 (449)
T ss_dssp             HHHHHHHHHHH-HTT----CCEEESSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHH
T ss_pred             HHHHHHHHHHH-HCC----CeeeCCCCeeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC-CHHH
Confidence            99999999999 876    5778888899999865   2 456778888789999986        2  999887 8999


Q ss_pred             HHHHHHHHHHHHHh
Q 012238          452 CEYLADAIIDSYHN  465 (467)
Q Consensus       452 i~~~~~~l~~~l~~  465 (467)
                      +++++++|++++++
T Consensus       426 i~~~l~~l~~~~~~  439 (449)
T 3qgu_A          426 ILEAVRRFKEAYGK  439 (449)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999864

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=100.00  E-value=3.9e-42  Score=342.85  Aligned_cols=339  Identities=14%  Similarity=0.110  Sum_probs=276.0

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +++.|||+.|.+    ..+. ++.+.+++.+.+..+. ..|.+ .| .++|+++++++...++..+++++|++  |+|++
T Consensus        22 g~~~idl~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~--t~g~~   91 (377)
T 3fdb_A           22 GQGVLPLWVAES----DFST-CPAVLQAITDAVQREA-FGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFP--IPDVV   91 (377)
T ss_dssp             CTTSEECCSSCC----CSCC-CHHHHHHHHHHHHTTC-CSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEE--ESCHH
T ss_pred             CCCeeeecccCC----CCCC-CHHHHHHHHHHHHcCC-CCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEE--eCChH
Confidence            458999999976    4544 7889999998886543 67877 77 89999999999866666677899999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      ++++++  +...+.+||+|+++.|+|..+...++..|++++.+|+++  +  +|++.+++.+++   +++++++++||||
T Consensus        92 ~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~--~d~~~l~~~l~~---~~~~v~i~~p~np  162 (377)
T 3fdb_A           92 RGLYIA--IDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATG--G--INLHDVEKGFQA---GARSILLCNPYNP  162 (377)
T ss_dssp             HHHHHH--HHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTT--S--CCHHHHHHHHHT---TCCEEEEESSBTT
T ss_pred             HHHHHH--HHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCC--C--CCHHHHHHHhcc---CCCEEEEeCCCCC
Confidence            999998  444567999999999999999999999999999999843  2  999999999984   5678889999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|+++|++||+++|+||+|.++.+++ +....++..+ ...++++++.|+||.+|++|+|+||++  ++
T Consensus       163 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~-~~~~~~i~~~s~sK~~g~~G~r~G~~~--~~  238 (377)
T 3fdb_A          163 LGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDG-QHTVAAGVSD-TAASVCITITAPSKAWNIAGLKCAQII--FS  238 (377)
T ss_dssp             TTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS-CCCCGGGSCH-HHHHHEEEEECSTTTTTCGGGCCEEEE--CC
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCC-CCCcccHHHc-cCCCcEEEEEeChHhccCcchhheEEE--eC
Confidence            9999999999999999999999999999999988753 0111122111 123578999999999999999999985  56


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-C
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-K  400 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~-g  400 (467)
                      ++++++.            +.........+++.+++.++..+|.+.      .+++++.+++++++++.+.+.|+ +. +
T Consensus       239 ~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~~  299 (377)
T 3fdb_A          239 NPSDAEH------------WQQLSPVIKDGASTLGLIAAEAAYRYG------TDFLNQEVAYLKNNHDFLLHEIP-KRIP  299 (377)
T ss_dssp             SHHHHHH------------HHHSCHHHHCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHST
T ss_pred             CHHHHHH------------HHHHHHhhcCCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHH-hhCC
Confidence            7887777            555544445577888888877777542      23467889999999999999998 74 2


Q ss_pred             CCCCcccccCCcceEEecCC-----CHHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          401 SGKDWSFILRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       401 ~~~~~~~~~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                         .+.+..+++++++|+.+     +.++++.+++++||.+.+|        +  ||+++. +++++++++++|++++++
T Consensus       300 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~-~~e~i~~~l~~l~~~l~~  375 (377)
T 3fdb_A          300 ---GAKITPMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT-SREVLEEAIDRMAKAVSH  375 (377)
T ss_dssp             ---TCEECCCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHTT
T ss_pred             ---CceEecCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhh
Confidence               16788899999988744     4467888888789999986        2  999997 899999999999999876


Q ss_pred             c
Q 012238          466 V  466 (467)
Q Consensus       466 ~  466 (467)
                      +
T Consensus       376 ~  376 (377)
T 3fdb_A          376 H  376 (377)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=100.00  E-value=7e-42  Score=347.14  Aligned_cols=371  Identities=14%  Similarity=0.164  Sum_probs=273.6

Q ss_pred             CCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHH---------HHHHhcCCCCcCCCCcchHHH
Q 012238           61 GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAE---------NLMLERGENKEYLPIEGLAAF  131 (467)
Q Consensus        61 ~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~---------~~~~~~~~~~~Y~~~~G~~~l  131 (467)
                      ++...+++++..+.+..... .+++|+|+.|.| |...+|.  .....++         ......  ...|.+..|.+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~G~p-~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~l   83 (425)
T 2r2n_A           10 ASAARNPSPIRTMTDILSRG-PKSMISLAGGLP-NPNMFPF--KTAVITVENGKTIQFGEEMMKR--ALQYSPSAGIPEL   83 (425)
T ss_dssp             HHHTCCCCSGGGHHHHHHHS-CTTCEECCCCCC-CGGGCSE--EEEEEEETTSCCEEECHHHHHH--HTSCCCTTCCHHH
T ss_pred             HHhcCCCchHHHHHHHhhcC-CCCeEEcCCcCC-CchhCCH--HHHHHHHhhcccccccccchhh--hcCCCCCCCCHHH
Confidence            34445566777777666543 257999999998 3222221  1000000         000111  1569999999999


Q ss_pred             HHHHHHHHhCCCCcccc-------cCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEe
Q 012238          132 NKVTAELLFGADNSVLK-------EQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEY  204 (467)
Q Consensus       132 r~aia~~l~~~~~~~~~-------~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v  204 (467)
                      |+++++++...+|...+       +++|++  |+|+++++.++  +...+.+||+|++++|+|..|...++..|++++.+
T Consensus        84 r~~ia~~l~~~~g~~~~~~~~~~~~~~i~~--t~G~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v  159 (425)
T 2r2n_A           84 LSWLKQLQIKLHNPPTIHYPPSQGQMDLCV--TSGSQQGLCKV--FEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIINV  159 (425)
T ss_dssp             HHHHHHHHHHHHCCTTTTSCGGGTCEEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHGGGTCEEEEE
T ss_pred             HHHHHHHHHHhcCCCCccccccCCcCcEEE--eCcHHHHHHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEe
Confidence            99999998665565543       368988  99999999998  44446799999999999999999999999999999


Q ss_pred             eeecCCCCCCChhhHHHHHHcCC---------CCcEEE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCC
Q 012238          205 RYYDPKTVGLDFEGMIADIKAAP---------GGSFIL-LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF  274 (467)
Q Consensus       205 ~~~~~~~~~~d~~~l~~~l~~~~---------~~~~~i-~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~  274 (467)
                      ++++   .++|++.+++.+++.+         .+++++ ++++||||||.+++.+++++|+++|++||++||+||+|.++
T Consensus       160 ~~~~---~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~  236 (425)
T 2r2n_A          160 ASDE---SGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFL  236 (425)
T ss_dssp             CEET---TEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGG
T ss_pred             CcCC---CCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence            9853   2599999999997321         234555 45899999999999999999999999999999999999988


Q ss_pred             CCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCch
Q 012238          275 ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPV  354 (467)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  354 (467)
                      .+++.  ...++..+ +..+++++++||||.++ +|+|+||++   .++++++.            +.........+++.
T Consensus       237 ~~~g~--~~~~~~~~-~~~~~~i~~~s~SK~~~-~GlRiG~~~---~~~~l~~~------------l~~~~~~~~~~~~~  297 (425)
T 2r2n_A          237 QFNKF--RVPTFLSM-DVDGRVIRADSFSKIIS-SGLRIGFLT---GPKPLIER------------VILHIQVSTLHPST  297 (425)
T ss_dssp             BSSSS--CCCCTGGG-CTTSCEEEEEESTTTTC-STTCCEEEE---EEHHHHHH------------HHHHHHTTTCSSCH
T ss_pred             cCCCC--CCCCcccc-CCCCCEEEEccchhhcc-CccceEEEe---cCHHHHHH------------HHHHHHHhcCCCCH
Confidence            77531  11112122 23458999999999999 999999996   67777777            55544444557788


Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-----CHHHHHHHH
Q 012238          355 HGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NKAQSDNMT  429 (467)
Q Consensus       355 ~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~~~~~~~ll  429 (467)
                      +.|.++..+|++.. .+.|.+++++++++++++|+.+.+.|+ +. +|+...+..|.+|+|+|+.+     +.+++.+.+
T Consensus       298 ~~q~a~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~-~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l  374 (425)
T 2r2n_A          298 FNQLMISQLLHEWG-EEGFMAHVDRVIDFYSNQKDAILAAAD-KW-LTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKA  374 (425)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-CSSSEEECCCSBSSEEEEEETTCSCCHHHHHTHH
T ss_pred             HHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHH-HH-CCCCeEEeCCCceEEEEEEeCCCCCHHHHHHHHH
Confidence            89998888876411 123456688999999999999999998 64 11112456788999999854     235445555


Q ss_pred             HcccEEEeCC-----------C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          430 NKWHVYMTKD-----------G--RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       430 ~~~gI~v~~g-----------g--Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .++||.+.||           +  |||++..+++++++++++|+++++++
T Consensus       375 ~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~  424 (425)
T 2r2n_A          375 VKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES  424 (425)
T ss_dssp             HHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence            5679999874           2  99998558999999999999998753

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=100.00  E-value=1.4e-41  Score=340.30  Aligned_cols=336  Identities=12%  Similarity=0.124  Sum_probs=266.1

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCCch
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (467)
                      ++.|||+.|.+    ..++ ++.+.+++.+.+..+ ...|.+..|..++|+++++++....|..++++ +|++  |+|++
T Consensus        30 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~--~~g~~  101 (386)
T 1u08_A           30 HQAINLSQGFP----DFDG-PRYLQERLAHHVAQG-ANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITV--TAGAT  101 (386)
T ss_dssp             TTCEECCCSSC----SSCC-CHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEE--ESSHH
T ss_pred             CCeEEecCCCC----CCCC-CHHHHHHHHHHHHhh-ccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEE--cCChH
Confidence            47899999987    3333 788999998887653 36788888999999999999865445556678 9999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      +++.++  +...+.+||+|+++.|+|..+...++..|++++.+++++ +++++|++.+++.++   ++++++++++||||
T Consensus       102 ~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~---~~~~~v~l~~p~np  175 (386)
T 1u08_A          102 EALYAA--ITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQP-PHFRVDWQEFAALLS---ERTRLVILNTPHNP  175 (386)
T ss_dssp             HHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCT-TTCCCCHHHHHHHCC---TTEEEEEEESSCTT
T ss_pred             HHHHHH--HHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCc-ccCcCCHHHHHHhhc---ccCEEEEEeCCCCC
Confidence            999998  333467999999999999999999999999999999853 357899999999986   57788888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|+++|++||+++|+||+|.++.+++..  ..++..+....++++++.|+||.++++|+|+||++   .
T Consensus       176 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~---~  250 (386)
T 1u08_A          176 SATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQG--HASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCV---A  250 (386)
T ss_dssp             TCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSC--CCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEE---C
T ss_pred             CCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCC--CcChhcccCccCcEEEEecchhhcCCcccceEEEE---c
Confidence            999999999999999999999999999999998875321  11111111123578999999999999999999996   6


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +.........+++.+.|.++..+|++.      .+++++.+++++++++++.+.|+ ++| 
T Consensus       251 ~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~g-  310 (386)
T 1u08_A          251 PAPISAE------------IRKVHQYLTFSVNTPAQLALADMLRAE------PEHYLALPDFYRQKRDILVNALN-ESR-  310 (386)
T ss_dssp             CHHHHHH------------HHHHHHHHTSSCCHHHHHHHHHHHHHC------THHHHTHHHHHHHHHHHHHHHTT-SSS-
T ss_pred             CHHHHHH------------HHHHHHhhccCCChHHHHHHHHHHhCC------cHHHHHHHHHHHHHHHHHHHHHH-HCC-
Confidence            7887776            444333223456677777777777532      23367888999999999999999 776 


Q ss_pred             CCCcccccCCcceEEecCC------CH-HHHHHHHHcccEEEeCC--------C----eEEeccCChhhHHHHHHHHHH
Q 012238          402 GKDWSFILRQIGMFSFTGL------NK-AQSDNMTNKWHVYMTKD--------G----RISLAGLSLAKCEYLADAIID  461 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~g--------g----Ris~~~~~~~~i~~~~~~l~~  461 (467)
                         +.+..+++|+|+|+.+      +. ++.+++++++||.+.+|        +    ||+++. +++++++++++|++
T Consensus       311 ---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~  385 (386)
T 1u08_A          311 ---LEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQ  385 (386)
T ss_dssp             ---CEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHTT
T ss_pred             ---CeecCCCceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcC-CHHHHHHHHHHHhh
Confidence               5777788899998754      23 34566776789999864        2    999987 88999999998864

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=100.00  E-value=5.6e-42  Score=348.24  Aligned_cols=360  Identities=17%  Similarity=0.217  Sum_probs=274.4

Q ss_pred             CCcEEecCcccCCCCCCCCchHHH--HHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCc---eeeeec
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVV--KKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQR---VATVQG  157 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v--~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~---i~~~~t  157 (467)
                      +++|||+.|.|.+ .+.   ++.+  .+++.+.+.......|.+..|.+++|+++++++...+ ..+++++   |++  |
T Consensus        47 ~~~i~l~~g~~~~-~~~---~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~--t  119 (430)
T 2x5f_A           47 STTYNATIGMATN-KDG---KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIV--T  119 (430)
T ss_dssp             TCSEECCCSSCEE-TTE---ECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEE--E
T ss_pred             CCcEEeeeeeccC-CCC---chhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEE--c
Confidence            5789999998721 111   2333  4544444332123689888899999999999986543 4455788   888  9


Q ss_pred             CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeC
Q 012238          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG  236 (467)
Q Consensus       158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~  236 (467)
                      +|+++++.++  +...+.+||+|+++.|+|..+...++. .|++++.++++++ ++++|++.+++.+++.+.++++++++
T Consensus       120 ~g~~~al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~~~~v~i~  196 (430)
T 2x5f_A          120 NALTHGLSLV--GDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDK-DGHYTTDSLVEALQSYNKDKVIMILN  196 (430)
T ss_dssp             SHHHHHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCT-TSCBCSHHHHHHHHHCCSSEEEEEEC
T ss_pred             CCchHHHHHH--HHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCc-cCCcCHHHHHHHHHhcCCCCEEEEEc
Confidence            9999999998  344467999999999999999999999 9999999998643 37899999999998543478888999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHh-----cCCeeEEeccCCCCCCCCCCCChhHHH-HHHhcCCe---EEEEecCccCcc
Q 012238          237 CAHNPTGIDPTPEQWEKIADVIQE-----KNHIPFFDVAYQGFASGSLDNDASSVR-LFATRGME---LLVAQSYSKNLG  307 (467)
Q Consensus       237 ~p~NPTG~~~~~~~l~~l~~~~~~-----~~~~li~Deay~~~~~~~~~~~~~~~~-~~~~~~~~---~i~~~S~SK~~~  307 (467)
                      +||||||.+++.+++++|+++|++     +|+++|+||+|.++.+++.  ...++. .+....++   +++++||||.++
T Consensus       197 ~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~  274 (430)
T 2x5f_A          197 YPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDV--YTQSLFTALTNLHSNAILPIRLDGATKEFF  274 (430)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSS--CCSCHHHHHHTTCCTTEEEEEEEEHHHHTT
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcc--cchHHHHHHhhccCCcceEEEEEecccCCC
Confidence            999999999999999999999999     9999999999999987531  112232 33233567   899999999999


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhC-ChhhHHHHHHHHHHHHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVG-NPALFDEWKAEMEMMAGRIKN  386 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~l~~~~~~~~~  386 (467)
                      ++|+|+||++.+..++++++.        +........+..+.+++.+.|.++..+|+ +.    .|.+++++.++++++
T Consensus       275 ~~G~riG~~~~~~~~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~  342 (430)
T 2x5f_A          275 AWGFRVGFMTFGTSDQTTKEV--------LEAKVKGLIRSNISSGPLPTQSAVKHVLKNNK----QFDKEIEQNIQTLKE  342 (430)
T ss_dssp             CGGGCCEEEEEBCCCHHHHHH--------HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEecCCHHHHHH--------HHHHHhhhhhcccCCCChHHHHHHHHHHccCh----HHHHHHHHHHHHHHH
Confidence            999999999611128888877        33221111112456788889999998887 75    345567789999999


Q ss_pred             HHHHHHHHhhhccCCCCCcccccCCcceEEecCC---CH-HHHHHHHHcccEEEeCCC----eEEeccCChhhHHHHHHH
Q 012238          387 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---NK-AQSDNMTNKWHVYMTKDG----RISLAGLSLAKCEYLADA  458 (467)
Q Consensus       387 ~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---~~-~~~~~ll~~~gI~v~~gg----Ris~~~~~~~~i~~~~~~  458 (467)
                      +++.+.+.|+ +.....++.+..+++|+|+|+.+   +. ++.+.+++++||.+.+|+    |||++..+++++++++++
T Consensus       343 ~~~~l~~~L~-~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~~~~e~i~~~~~~  421 (430)
T 2x5f_A          343 RYEVTKEVVY-ADQYHSHWQAYDFNSGYFMAIKVHDVDPEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDDIPHVFDS  421 (430)
T ss_dssp             HHHHHHHHHT-CGGGTTTEEECCCCBSSEEEEEESSSCHHHHHHHHHHHHCEECEECSSSEEEEEGGGSCGGGHHHHHHH
T ss_pred             HHHHHHHHHH-hhCCCCCceeeCCCceEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCeEEEEEecCCHHHHHHHHHH
Confidence            9999999997 43100126777888999988754   34 456677765799999973    999994488999999999


Q ss_pred             HHHHHHhcC
Q 012238          459 IIDSYHNVS  467 (467)
Q Consensus       459 l~~~l~~~~  467 (467)
                      |++++++++
T Consensus       422 l~~~l~~~~  430 (430)
T 2x5f_A          422 IAKAIDDLR  430 (430)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            999998763

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3.8e-42  Score=347.48  Aligned_cols=341  Identities=15%  Similarity=0.107  Sum_probs=267.2

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCCch
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (467)
                      ++.|||+.|.+    ..+. ++.+.+++.+.+... ...|.+..|..++|+++++++...+|..++++ +|++  |+|++
T Consensus        25 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~--t~g~~   96 (411)
T 2o0r_A           25 IGAVNLGQGFP----DEDG-PPKMLQAAQDAIAGG-VNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLV--TVGAT   96 (411)
T ss_dssp             TTCEESSCSSC----SSCC-CHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEE--EEHHH
T ss_pred             CCeeeccCcCC----CCCC-CHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEE--eCCHH
Confidence            46899999987    3333 788999998888654 36798888999999999999865555556677 9999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecC-CCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP-KTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      +++.++  +...+.+||+|+++.|+|..+...++..|++++.++++++ .++.+|++.+++.++   ++++++++++|+|
T Consensus        97 ~al~~~--~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~~~n  171 (411)
T 2o0r_A           97 EAIAAA--VLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVT---PRTRALIINSPHN  171 (411)
T ss_dssp             HHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCC---TTEEEEEEESSCT
T ss_pred             HHHHHH--HHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhc---cCceEEEEeCCCC
Confidence            999998  3444679999999999999999999999999999998543 246699999999986   5678888999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      |||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+....+.++++.|+||.++++|+|+||++   
T Consensus       172 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~---  246 (411)
T 2o0r_A          172 PTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHA--RHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWAC---  246 (411)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEE---
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcChhhccCCCCCEEEEeechhhcCCccceEEEEe---
Confidence            999999999999999999999999999999999887531  111121111113578999999999999999999996   


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      .++++++.            +.........+.+.+.|.++..+|+..      .+.+++.+++++++++++.+.|+ +.|
T Consensus       247 ~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~g  307 (411)
T 2o0r_A          247 GPAELIAG------------VRAAKQYLSYVGGAPFQPAVALALDTE------DAWVAALRNSLRARRDRLAAGLT-EIG  307 (411)
T ss_dssp             CCHHHHHH------------HHHHHHHHTSCCCTTHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHT
T ss_pred             eCHHHHHH------------HHHHHhhccCCCChHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHHH-HcC
Confidence            67888776            433332222344556677777666432      23467888999999999999999 776


Q ss_pred             CCCCcccccCCcceEEecCC------CH-HHHHHHHHcccEEEeCC-----------------C----eEEeccCChhhH
Q 012238          401 SGKDWSFILRQIGMFSFTGL------NK-AQSDNMTNKWHVYMTKD-----------------G----RISLAGLSLAKC  452 (467)
Q Consensus       401 ~~~~~~~~~~~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~g-----------------g----Ris~~~~~~~~i  452 (467)
                          +.+..+++|+|+|+.+      +. ++.+++++++||.+.+|                 +    ||+++. +++++
T Consensus       308 ----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i  382 (411)
T 2o0r_A          308 ----FAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK-RDDTL  382 (411)
T ss_dssp             ----CEECCCCBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCS-CHHHH
T ss_pred             ----CEecCCCeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecC-CHHHH
Confidence                5777788898988754      23 45666776679998652                 2    999987 88999


Q ss_pred             HHHHHHHHHHHHh
Q 012238          453 EYLADAIIDSYHN  465 (467)
Q Consensus       453 ~~~~~~l~~~l~~  465 (467)
                      ++++++|++++++
T Consensus       383 ~~~~~~l~~~~~~  395 (411)
T 2o0r_A          383 DEAIRRLSVLAER  395 (411)
T ss_dssp             HHHHHHHGGGGC-
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987754

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=7.8e-42  Score=340.93  Aligned_cols=337  Identities=16%  Similarity=0.104  Sum_probs=268.1

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCC
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLS  159 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~g  159 (467)
                      .+.+.|||+.|.+    ..+. ++.+.+++.+.+.......|.+..|..++|+++++++...+|..++++ +|++  |+|
T Consensus        23 ~g~~~idl~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~--~~g   95 (376)
T 2dou_A           23 RGVGLIDLSIGST----DLPP-PEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALA--LIG   95 (376)
T ss_dssp             TTCCCEECSSCCC----CCCC-CHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEE--ESS
T ss_pred             cCCCEEeccCCCC----CCCC-CHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEE--cCC
Confidence            3457999999987    3333 688999998887543246787667999999999999865445555566 8999  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +++++.++  +...+.+||+|+++.|+|..+...++..|++++.+|+  ++++.+|++.+++.++   ++++++++++||
T Consensus        96 ~~~a~~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~---~~~~~v~l~~p~  168 (376)
T 2dou_A           96 SQEGLAHL--LLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLKAVPEGVW---REAKVLLLNYPN  168 (376)
T ss_dssp             HHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGGGSCHHHH---HHEEEEEECSSC
T ss_pred             cHHHHHHH--HHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHhhc---cCceEEEECCCC
Confidence            99999998  3444668999999999999999999999999999988  4566789999999987   467888889999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||.+++.+++++|+++|++||+++|+||+|.++.+++......   .+.+..++++++.||||.+|++|+|+||++  
T Consensus       169 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~---~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~--  243 (376)
T 2dou_A          169 NPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPL---ALPGAKERVVELFSLSKSYNLAGFRLGFAL--  243 (376)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGG---GSTTGGGTEEEEEEHHHHHTCGGGCCEEEE--
T ss_pred             CCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChh---hcCCCCCcEEEEecchhhcCChhheeEEEe--
Confidence            999999999999999999999999999999999988653111111   111223578999999999999999999995  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                       .++++++.            +.........+++.+.|.++..+|++.      .+++++.+++++++++.+.+.|+ ++
T Consensus       244 -~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~  303 (376)
T 2dou_A          244 -GSEEALAR------------LERVKGVIDFNQYAGVLRMGVEALKTP------KEVVRGYARVYRERALGMAEALK-GV  303 (376)
T ss_dssp             -ECHHHHHH------------HHHHHHHHCCCSCHHHHHHHHHHHTSC------HHHHHHHHHHHHHHHHHHHHHHT-TT
T ss_pred             -cCHHHHHH------------HHHHHHhcccCCCHHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence             67888877            444433334456778888888888763      23467888999999999999998 65


Q ss_pred             CCCCCcccccCCcceEEecCCC-----HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHHH
Q 012238          400 KSGKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       400 g~~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~l  463 (467)
                           +.+..+.+|+|+|+.+.     .++.++++++ ||.+.+|        +  ||+++. +++++++++++|++++
T Consensus       304 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~-~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          304 -----LSLLPPRATMYLWGRLPEGVDDLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVR-PLEELLEAAKRIREAL  375 (376)
T ss_dssp             -----SEECCCCBSSEEEEECCTTCCHHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred             -----cCccCCCeeEEEEEECCCCCCHHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence                 35667788999987552     3456677765 9999875        2  999987 8899999999998865

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=100.00  E-value=2.1e-41  Score=337.55  Aligned_cols=349  Identities=12%  Similarity=0.048  Sum_probs=274.7

Q ss_pred             CCCcccchHHHhhc-CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCC
Q 012238           66 PPDPILGVSEAFKA-DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADN  144 (467)
Q Consensus        66 ~~~~i~~~~~~~~~-~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~  144 (467)
                      +++++.++.+.++. ....++|||+.|.+    ..+. ++.+.+++.+.+..  ...|.+..|.+++|+++++++...+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~g~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~--~~~y~~~~g~~~lr~~la~~l~~~~g   77 (376)
T 3ezs_A            5 EPYPFERLRALLKEITPKKRGLDLGIGEP----QFET-PKFIQDALKNHTHS--LNIYPKSAFEESLRAAQRGFFKRRFK   77 (376)
T ss_dssp             CCCHHHHHHHHHTTCCCSSCCCBCSSCCC----CSCC-CHHHHHHHHTTGGG--GGSCCCTTCCHHHHHHHHHHHHHHHS
T ss_pred             CcchHHHHHHHHHhhhccCCEEEeCCCCC----CCCC-CHHHHHHHHHhhhh--cCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            44555566655543 12238999999987    4443 78899998887632  37798888999999999999866556


Q ss_pred             cccccCceeeeecCCchhHHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHH
Q 012238          145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFP--GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD  222 (467)
Q Consensus       145 ~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~--gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~  222 (467)
                      ..+++++|++  |+|+++++.++  +...+.+  ||+|+++.|+|..+...++..|++++.++++++.  ++++ .+++.
T Consensus        78 ~~~~~~~i~~--t~g~~~al~~~--~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~-~l~~~  150 (376)
T 3ezs_A           78 IELKENELIS--TLGSREVLFNF--PSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKEN--DFTP-SLNEK  150 (376)
T ss_dssp             CCCCGGGEEE--ESSSHHHHHHH--HHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGG--TSCC-CCCHH
T ss_pred             CCCCHHHEEE--CcCcHHHHHHH--HHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCC--Ccch-hHHhh
Confidence            6567899999  99999999997  3445678  9999999999999999999999999999985432  3454 66666


Q ss_pred             HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-----cCCeEE
Q 012238          223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-----RGMELL  297 (467)
Q Consensus       223 l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~-----~~~~~i  297 (467)
                      +.   ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.   ..+......     ..++++
T Consensus       151 ~~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i  224 (376)
T 3ezs_A          151 EL---QEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTP---PPSLLEACMLAGNEAFKNVL  224 (376)
T ss_dssp             HH---HHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC---CCCHHHHHHHTTCTTCTTEE
T ss_pred             hc---cCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC---CCCHHHccccccccccCcEE
Confidence            66   3556888899999999999999999999999999999999999999987642   222222222     457899


Q ss_pred             EEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l  377 (467)
                      ++.||||.+|++|+|+||++   .++++++.            +.........+++.+.+.++..+|.+.       +++
T Consensus       225 ~~~s~sK~~g~~G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~~  282 (376)
T 3ezs_A          225 VIHSLSKRSSAPGLRSGFIA---GDSRLLEK------------YKAFRAYLGYTSANAIQKASEAAWLDD-------RHA  282 (376)
T ss_dssp             EEEESTTTTTCGGGCCEEEE---ECHHHHHH------------HHHHHTTTCCCCCHHHHHHHHHHHHCS-------HHH
T ss_pred             EEecchhccCCccceeEEEe---eCHHHHHH------------HHHHHhhhcCCCChHHHHHHHHHHhCc-------HHH
Confidence            99999999999999999995   68888877            555555445577888888888888764       236


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC--HHHHHHHHHcccEEEeCC----------C--eEE
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN--KAQSDNMTNKWHVYMTKD----------G--RIS  443 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~--~~~~~~ll~~~gI~v~~g----------g--Ris  443 (467)
                      ++.+++++++++.+.+.|+   +    +.  .+.+|+|+|+.+.  .++.+++++++||.+.+|          +  ||+
T Consensus       283 ~~~~~~~~~~~~~l~~~l~---~----~~--~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis  353 (376)
T 3ezs_A          283 EFFRNIYANNLKLARKIFK---N----TL--IYPYSFYVYLPVQNGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLA  353 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHST---T----CC--CCSBSSEEEEECSCHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhc---C----CC--CCCcceEEEEECCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEE
Confidence            7888999999999998885   3    33  5678899998773  455667776579999864          2  999


Q ss_pred             eccCChhhHHHHHHHHHHHHHhc
Q 012238          444 LAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       444 ~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ++. +++++++++++|++++++.
T Consensus       354 ~~~-~~~~i~~~l~~l~~~l~~~  375 (376)
T 3ezs_A          354 LVY-DTPLLEKPLEIIETYRENH  375 (376)
T ss_dssp             CCS-CHHHHHHHHHHHHHHHCC-
T ss_pred             EcC-CHHHHHHHHHHHHHHHHhc
Confidence            987 8999999999999998764

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=100.00  E-value=1.4e-41  Score=345.06  Aligned_cols=344  Identities=14%  Similarity=0.061  Sum_probs=271.8

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCC
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLS  159 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~g  159 (467)
                      ++.|||+.|.+    ..+. ++.+.+++.+.+...  ....|.+..|..++|+++++++....|..++++ +|++  |+|
T Consensus        37 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~--~~g  109 (429)
T 1yiz_A           37 YKPLNLGQGFP----DYHA-PKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLV--TVG  109 (429)
T ss_dssp             HCCEECCSSSC----SSCC-CHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEE--ESH
T ss_pred             CCEEEecCCCC----CCCC-CHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEE--ecC
Confidence            36899999987    3343 788999998887541  136787778999999999999865445555678 9999  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCC--------CCCCChhhHHHHHHcCCCCcE
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK--------TVGLDFEGMIADIKAAPGGSF  231 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~--------~~~~d~~~l~~~l~~~~~~~~  231 (467)
                      +++++.++  +...+.+||+|+++.|+|..+...++..|++++.+|++++.        ++++|++.+++.++   ++++
T Consensus       110 ~~~a~~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~  184 (429)
T 1yiz_A          110 AYEALYAT--IQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN---EKTK  184 (429)
T ss_dssp             HHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCC---TTEE
T ss_pred             hHHHHHHH--HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhc---cCce
Confidence            99999998  33346799999999999999999999999999999986432        56799999999986   5778


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCC
Q 012238          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (467)
Q Consensus       232 ~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~  311 (467)
                      ++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+....++++++.|+||.++++|+
T Consensus       185 ~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~  262 (429)
T 1yiz_A          185 MIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF--EHIRICTLPGMWERTITIGSAGKTFSLTGW  262 (429)
T ss_dssp             EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTS--CCCCGGGSTTTGGGEEEEEEHHHHHTCGGG
T ss_pred             EEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCC--CCcChhhccCCcCceEEEecchhccCCCCc
Confidence            888899999999999999999999999999999999999999887531  111121111123579999999999999999


Q ss_pred             ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCC-----hhhHHHHHHHHHHHHHHHHH
Q 012238          312 RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGN-----PALFDEWKAEMEMMAGRIKN  386 (467)
Q Consensus       312 RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~-----~~~~~~~~~~l~~~~~~~~~  386 (467)
                      |+||++   .++++++.            +.........+.+.+.|.++..+|++     ..+    .+++++.++++++
T Consensus       263 r~G~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~----~~~~~~~~~~~~~  323 (429)
T 1yiz_A          263 KIGWAY---GPEALLKN------------LQMVHQNCVYTCATPIQEAIAVGFETELKRLKSP----ECYFNSISGELMA  323 (429)
T ss_dssp             CCEEEE---SCHHHHHH------------HHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST----TSHHHHHHHHHHH
T ss_pred             ceEEEE---eCHHHHHH------------HHHHHhhcccCCChHHHHHHHHHHhcccccccch----HHHHHHHHHHHHH
Confidence            999996   67888777            54443333456777788888777764     211    2346788899999


Q ss_pred             HHHHHHHHhhhccCCCCCcccccCCcceEEecCCC----------------H-HHHHHHHHcccEEEeCC----------
Q 012238          387 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----------------K-AQSDNMTNKWHVYMTKD----------  439 (467)
Q Consensus       387 ~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~----------------~-~~~~~ll~~~gI~v~~g----------  439 (467)
                      +++.+.+.|+ ++|    +.+..+.+|+|+|+.+.                . ++++++++++||.+.+|          
T Consensus       324 ~~~~l~~~L~-~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~  398 (429)
T 1yiz_A          324 KRDYMASFLA-EVG----MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKH  398 (429)
T ss_dssp             HHHHHHHHHH-HHT----CEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGG
T ss_pred             HHHHHHHHHH-hCC----CcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccC
Confidence            9999999999 776    56777888999987542                2 34566776789999874          


Q ss_pred             ---C--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          440 ---G--RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       440 ---g--Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                         +  ||+++. +++++++++++|+++++.
T Consensus       399 ~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~  428 (429)
T 1yiz_A          399 LGEDFVRYCFFK-KDENLQKAAEILRKWKGS  428 (429)
T ss_dssp             GTTTEEEEECCS-CHHHHHHHHHHHHHHSCC
T ss_pred             CCCCeEEEEecC-CHHHHHHHHHHHHHhccC
Confidence               2  999997 899999999999998764

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=100.00  E-value=4.5e-41  Score=339.02  Aligned_cols=364  Identities=18%  Similarity=0.153  Sum_probs=277.9

Q ss_pred             CCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHh
Q 012238           61 GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLF  140 (467)
Q Consensus        61 ~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~  140 (467)
                      ++...+...+. ..+.+..+ +++.|+|+.|.+. ...++. ++.+.+++.+.+.... ..|.+..|.+++|+++++++.
T Consensus        18 ~~~~~~~~~~~-~~~~~~~~-g~~~i~l~~~~~~-~~~~~~-~~~v~~a~~~~~~~~~-~~y~~~~g~~~l~~~la~~l~   92 (406)
T 1xi9_A           18 SVEYAIRDVVL-PARELEKK-GIKVIRLNIGDPV-KFDFQP-PEHMKEAYCKAIKEGH-NYYGDSEGLPELRKAIVEREK   92 (406)
T ss_dssp             TCCC--------CHHHHHHT-TCCCEECCCCCGG-GTTCCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHH
T ss_pred             cCChhHHHHHH-HHHHHHHc-CCCEEEecCCCCC-cCCCCC-CHHHHHHHHHHHhcCC-CCCCCCCCcHHHHHHHHHHHH
Confidence            34444444455 55555543 4689999999871 112233 6888899888876543 578888899999999999997


Q ss_pred             CCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHH
Q 012238          141 GADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI  220 (467)
Q Consensus       141 ~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~  220 (467)
                      ..+|..+++++|++  |+|+++++.++  +...+.+||+|++++|+|..+...++..|++++.+++++++++.+|++.++
T Consensus        93 ~~~g~~~~~~~v~~--t~g~~~al~~~--~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~  168 (406)
T 1xi9_A           93 RKNGVDITPDDVRV--TAAVTEALQLI--FGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIR  168 (406)
T ss_dssp             HHHCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHH
T ss_pred             HhcCCCCCHHHEEE--cCChHHHHHHH--HHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHH
Confidence            66666677889999  99999999998  333467999999999999999999999999999999864346678999999


Q ss_pred             HHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe-EEEE
Q 012238          221 ADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME-LLVA  299 (467)
Q Consensus       221 ~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~-~i~~  299 (467)
                      +.++   ++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.++.   ...++..+ + .++ ++++
T Consensus       169 ~~l~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~---~~~~~~~~-~-~~~~~i~~  240 (406)
T 1xi9_A          169 KKIT---DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG---EHISPGSL-T-KDVPVIVM  240 (406)
T ss_dssp             HHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS---CCCCHHHH-C-SSSCEEEE
T ss_pred             HhhC---cCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCC---CCCCHHHc-C-CCceEEEE
Confidence            9987   467888889999999999999999999999999999999999999988742   12223233 2 456 8999


Q ss_pred             ecCccCcccCCCccceEEEecCCH----HHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH
Q 012238          300 QSYSKNLGLYAERIGAMNVVCSSS----DLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA  375 (467)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  375 (467)
                      +||||.++++|+|+||+++ +.++    ++++.            +....... .+++.+.|.++..+|+..      .+
T Consensus       241 ~s~sK~~~~~G~r~G~~~~-~~~~~~~~~l~~~------------l~~~~~~~-~~~~~~~~~a~~~~l~~~------~~  300 (406)
T 1xi9_A          241 NGLSKVYFATGWRLGYMYF-VDPENKLSEVREA------------IDRLARIR-LCPNTPAQFAAIAGLTGP------MD  300 (406)
T ss_dssp             EESTTTTCCGGGCCEEEEE-ECTTCTTHHHHHH------------HHHHHHHT-CCSCSHHHHHHHHHHHSC------CH
T ss_pred             eccccccCCCccEEEEEEE-ecCchhHHHHHHH------------HHHHHHhh-cCCCHHHHHHHHHHHhCC------cH
Confidence            9999999999999999942 2666    77776            44333322 456677788888888432      12


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecC------CCH-HHHHHHHHcccEEEeCC--------C
Q 012238          376 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTG------LNK-AQSDNMTNKWHVYMTKD--------G  440 (467)
Q Consensus       376 ~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~------l~~-~~~~~ll~~~gI~v~~g--------g  440 (467)
                      .+++++++++++++++.+.|+ +++   ++.+..+++|+|+|+.      .+. ++.+++++++||.+.+|        +
T Consensus       301 ~~~~~~~~~~~~~~~l~~~L~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~  376 (406)
T 1xi9_A          301 YLKEYMKKLKERRDYIYKRLN-EIP---GISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAG  376 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TST---TEECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hCC---CCeeecCCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCC
Confidence            266788899999999999998 762   1677778889998853      233 44566775679999875        2


Q ss_pred             --eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          441 --RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 --Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                        ||+++ .+++++++++++|.++++++
T Consensus       377 ~lRis~~-~~~~~i~~~~~~l~~~l~~~  403 (406)
T 1xi9_A          377 HFRAVFL-PPIEILEEAMDRFEKFMKER  403 (406)
T ss_dssp             BEEEECC-SCHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEec-CCHHHHHHHHHHHHHHHHHH
Confidence              99999 48999999999999998764

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=100.00  E-value=1.1e-40  Score=339.37  Aligned_cols=353  Identities=16%  Similarity=0.188  Sum_probs=277.1

Q ss_pred             hcCCCC-CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-----------CCcCCCCcchHHHHHHHHHHHhC--CC
Q 012238           78 KADTDE-KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-----------NKEYLPIEGLAAFNKVTAELLFG--AD  143 (467)
Q Consensus        78 ~~~~~~-~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-----------~~~Y~~~~G~~~lr~aia~~l~~--~~  143 (467)
                      ..+.+| ..|+|+++..      +...+.+.+++.+......           ...|.+..|.++||+++++++..  ..
T Consensus        32 ~~~~~p~~~i~lg~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~  105 (435)
T 3piu_A           32 HEVHNTNGIIQMGLAEN------QLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGN  105 (435)
T ss_dssp             BTTTBTTSBEECSSCCC------CSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTT
T ss_pred             CcccCCCCeEEeccccc------cccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCC
Confidence            333444 5789998654      3347788888877543211           14698999999999999999873  33


Q ss_pred             CcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCCCeEEeeeecCCCCCCChhhHHHH
Q 012238          144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIAD  222 (467)
Q Consensus       144 ~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~  222 (467)
                      +..+++++|++  |+||++++.++  +...+.+||+|+++.|+|..+...++ ..|++++.++.+++.++.+|++.+++.
T Consensus       106 ~~~~~~~~v~~--~~gg~~a~~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~  181 (435)
T 3piu_A          106 KVTFDPNHLVL--TAGATSANETF--IFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEA  181 (435)
T ss_dssp             SSCCCGGGEEE--EEHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHH
T ss_pred             CCCCCHHHEEE--cCChHHHHHHH--HHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHH
Confidence            45566889999  99999999998  44456799999999999999998888 799999999987655678999999999


Q ss_pred             HHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-------
Q 012238          223 IKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-------  292 (467)
Q Consensus       223 l~~~---~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-------  292 (467)
                      +++.   ..+++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+...       
T Consensus       182 l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~d~~~  259 (435)
T 3piu_A          182 YQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP--SFISVMEVLKDRNCDENS  259 (435)
T ss_dssp             HHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS--CCCCHHHHHHC-------
T ss_pred             HHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcCHHHhcccccccccc
Confidence            9741   23778899999999999999999999999999999999999999999777542  22233333332       


Q ss_pred             --CCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhH
Q 012238          293 --GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALF  370 (467)
Q Consensus       293 --~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~  370 (467)
                        .++++++.||||.+|++|+|+||++  +.++++++.            +.....  +...+.+.+.++..+|.+..+.
T Consensus       260 ~~~~~~i~i~s~sK~~g~~G~r~G~~~--~~~~~~~~~------------~~~~~~--~~~~~~~~~~~~~~~l~~~~~~  323 (435)
T 3piu_A          260 EVWQRVHVVYSLSKDLGLPGFRVGAIY--SNDDMVVAA------------ATKMSS--FGLVSSQTQHLLSAMLSDKKLT  323 (435)
T ss_dssp             CGGGGEEEEEESSSSSCCGGGCEEEEE--ESCHHHHHH------------HHHHGG--GSCCCHHHHHHHHHHHHCHHHH
T ss_pred             CCCCCEEEEEeeecccCCCceeEEEEE--eCCHHHHHH------------HHHHhh--cCCCCHHHHHHHHHHhcChHHH
Confidence              4678999999999999999999996  456766665            444433  3346677888888888766442


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC-----------HHHHHHHHHcccEEEeCC
Q 012238          371 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----------KAQSDNMTNKWHVYMTKD  439 (467)
Q Consensus       371 ~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~-----------~~~~~~ll~~~gI~v~~g  439 (467)
                         .+++++.+++++++++.+.+.|+ +.|    +++..+++|+|+|+.+.           .++++++++++||.+.+|
T Consensus       324 ---~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g  395 (435)
T 3piu_A          324 ---KNYIAENHKRLKQRQKKLVSGLQ-KSG----ISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPG  395 (435)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHH-TTT----CEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEG
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHH-hcC----CcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCC
Confidence               23467888999999999999999 776    57788888899998653           245677778779999885


Q ss_pred             --------C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          440 --------G--RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 --------g--Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                              +  ||+++..+++++++++++|.++++++
T Consensus       396 ~~~~~~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~  432 (435)
T 3piu_A          396 SSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEY  432 (435)
T ss_dssp             GGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence                    2  99998768899999999999998865

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=100.00  E-value=7e-41  Score=338.55  Aligned_cols=354  Identities=14%  Similarity=0.162  Sum_probs=271.4

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhC------CCCcccccCceeeee
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFG------ADNSVLKEQRVATVQ  156 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~------~~~~~~~~~~i~~~~  156 (467)
                      +++|+|+.|.|......+ +++.+.+++.+.+.......|.+..|..++|+++++++..      ..|..+++++|++  
T Consensus        33 ~~~i~l~~g~p~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~--  109 (416)
T 1bw0_A           33 KPIIKLSVGDPTLDKNLL-TSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVL--  109 (416)
T ss_dssp             SCCEECCCCCTTTTSCSC-CCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEE--
T ss_pred             CCeEEecCcCCCcccCCC-CCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEE--
Confidence            478999999873212333 3788999998887654446798888999999999999871      3566677899999  


Q ss_pred             cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeC
Q 012238          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG  236 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~  236 (467)
                      |+|+++++.++  +...+.+||+|+++.|+|..+...++..|++++.++++++.++.+|++.+++.++   +++++++++
T Consensus       110 ~~g~~~al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~i~  184 (416)
T 1bw0_A          110 CSGGSHGILMA--ITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD---DKTKLLIVT  184 (416)
T ss_dssp             ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC---TTEEEEEEE
T ss_pred             eCChHHHHHHH--HHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhc---cCCeEEEEe
Confidence            99999999998  3334679999999999999999999999999999998654457799999999887   467888899


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC--ChhHHHHHHhcCCeEEEEecCccCcccCCCccc
Q 012238          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN--DASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (467)
Q Consensus       237 ~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG  314 (467)
                      +|+||||.+++.+++++|+++|++||++||+||+|.++.+++...  ...++..+ ....++++++||||.|+++|+|+|
T Consensus       185 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~Glr~G  263 (416)
T 1bw0_A          185 NPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADF-ETTVPRVILGGTAKNLVVPGWRLG  263 (416)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSS-CCSCCEEEEEESTTTTSCGGGCCE
T ss_pred             CCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHc-cCCCcEEEEecchhhCCCCCceEE
Confidence            999999999999999999999999999999999999987653200  11111111 223468999999999999999999


Q ss_pred             eEEEecCCH-HHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          315 AMNVVCSSS-DLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  393 (467)
Q Consensus       315 ~~~~v~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~  393 (467)
                      |++  +.++ ++++.        +...++.... ...+++.+.|.++..+|+...     ...+++.+++++++++++.+
T Consensus       264 ~~~--~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~  327 (416)
T 1bw0_A          264 WLL--YVDPHGNGPS--------FLEGLKRVGM-LVCGPCTVVQAALGEALLNTP-----QEHLDQIVAKIEESAMYLYN  327 (416)
T ss_dssp             EEE--EECTTCSCHH--------HHHHHHHHHH-HHTCSCHHHHHHHHHHHHSSC-----HHHHHHHHHHHHHHHHHHHH
T ss_pred             EEE--eeCchhhHHH--------HHHHHHHHhc-cccCCCcHHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHHH
Confidence            996  3444 34444        3322333211 133567788888888876421     23366788889999999999


Q ss_pred             HhhhccCCCCCcccccCCcceEEecCC---------CH-HHHHHHHHcccEEEeCC------C--eEEeccCChhhHHHH
Q 012238          394 SLSAKDKSGKDWSFILRQIGMFSFTGL---------NK-AQSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYL  455 (467)
Q Consensus       394 ~l~~~~g~~~~~~~~~~~~g~f~~~~l---------~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~~~~~i~~~  455 (467)
                      .|+ +++   ++.+..+.+|+|+|+.+         +. ++++++++++||.+.+|      +  ||+++. ++++++++
T Consensus       328 ~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~~-~~e~l~~~  402 (416)
T 1bw0_A          328 HIG-ECI---GLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTR-PVEVYREA  402 (416)
T ss_dssp             HHT-TST---TEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS-CHHHHHHH
T ss_pred             HHH-hCC---CCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEecC-CHHHHHHH
Confidence            998 762   15666778888888643         33 34667766779999986      2  999975 88999999


Q ss_pred             HHHHHHHHHhc
Q 012238          456 ADAIIDSYHNV  466 (467)
Q Consensus       456 ~~~l~~~l~~~  466 (467)
                      +++|.+++++.
T Consensus       403 l~~l~~~l~~~  413 (416)
T 1bw0_A          403 VERIKAFCQRH  413 (416)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=100.00  E-value=8.8e-41  Score=332.58  Aligned_cols=344  Identities=15%  Similarity=0.158  Sum_probs=270.9

Q ss_pred             CCCcccchHHHhhc--CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCC
Q 012238           66 PPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD  143 (467)
Q Consensus        66 ~~~~i~~~~~~~~~--~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~  143 (467)
                      +++++.++.+....  ..+++.|+|+.|.+    ..++ ++.+.+++.+.+... ...|.+..|.+++|+++++++...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~-~~~y~~~~~~~~l~~~la~~~~~~~   83 (370)
T 2z61_A           10 ESFEVMDILALAQKLESEGKKVIHLEIGEP----DFNT-PKPIVDEGIKSLKEG-KTHYTDSRGILELREKISELYKDKY   83 (370)
T ss_dssp             CCCTTHHHHHHHHHHHHTTCCCEECCCCSC----SSCC-CHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHS
T ss_pred             cccHHHHHHHHHHHHHhcCCCEEEccCCCC----CCCC-CHHHHHHHHHHHHcC-ccCCCCCCCCHHHHHHHHHHHHHHh
Confidence            34455555544331  13457999999987    4433 688999998887654 3679888899999999999997766


Q ss_pred             CcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHH
Q 012238          144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI  223 (467)
Q Consensus       144 ~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l  223 (467)
                      |..+++++|++  |+|+++++.++  +...+.+||+|++++|+|..+...++..|++++.++        +|++.+++.+
T Consensus        84 g~~~~~~~v~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~--------~d~~~l~~~l  151 (370)
T 2z61_A           84 KADIIPDNIII--TGGSSLGLFFA--LSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD--------FTVESLEEAL  151 (370)
T ss_dssp             SCCCCGGGEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC--------SSHHHHHHHC
T ss_pred             CCCCChhhEEE--CCChHHHHHHH--HHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC--------CCHHHHHHhc
Confidence            77777899999  99999999998  333467999999999999999999999999988876        6899999988


Q ss_pred             HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCc
Q 012238          224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (467)
Q Consensus       224 ~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S  303 (467)
                      +   ++++++++++||||||.+++.+    |+++|++||+++|+||+|.++.+++.   ..++..+....++++++.|||
T Consensus       152 ~---~~~~~v~~~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~~~~~~i~~~s~s  221 (370)
T 2z61_A          152 S---DKTKAIIINSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGK---CYSAIEFDENLEKTILINGFS  221 (370)
T ss_dssp             C---SSEEEEEEESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSC---CCCGGGTCTTCSSEEEEEEST
T ss_pred             c---cCceEEEEcCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCC---CcCHHHccCCCCcEEEEecCh
Confidence            7   4678888899999999999988    88889999999999999999887531   111211211346799999999


Q ss_pred             cCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCC-hhhHHHHHHHHHHHHH
Q 012238          304 KNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGN-PALFDEWKAEMEMMAG  382 (467)
Q Consensus       304 K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~l~~~~~  382 (467)
                      |.++++|+|+||++   .++++++.            +.........+++.+.|.++..+|+. .      .+++++.++
T Consensus       222 K~~~~~G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~  280 (370)
T 2z61_A          222 KLYAMTGWRIGYVI---SNDEIIEA------------ILKLQQNLFISAPTISQYAALKAFEKET------EREINSMIK  280 (370)
T ss_dssp             TTTTCGGGCCEEEE---CCHHHHHH------------HHHHHHHHTSSSCHHHHHHHGGGGSHHH------HHHHHHHHH
T ss_pred             hccCCccceEEEEE---ECHHHHHH------------HHHHHhhcccCCCHHHHHHHHHHHhccC------HHHHHHHHH
Confidence            99999999999996   77787777            44444433456778888888777754 2      234678889


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC--CH-HHHHHHHHcccEEEeCC--------C--eEEeccCCh
Q 012238          383 RIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSL  449 (467)
Q Consensus       383 ~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~  449 (467)
                      +++++++++.+.|+ ++|    +++..+++|+|+|+.+  +. ++.+++++++||.+.+|        +  ||+++. ++
T Consensus       281 ~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~-~~  354 (370)
T 2z61_A          281 EFDRRRRLVLKYVK-DFG----WEVNNPIGAYYVFPNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYAN-SY  354 (370)
T ss_dssp             HHHHHHHHHHHHHH-HTT----CBCCCCCBTTEECCBCSSCHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCS-CH
T ss_pred             HHHHHHHHHHHHHH-HcC----CeecCCCcceEEEEecCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeC-CH
Confidence            99999999999999 776    5677788899999876  33 44666665679999875        2  999995 89


Q ss_pred             hhHHHHHHHHHHHHH
Q 012238          450 AKCEYLADAIIDSYH  464 (467)
Q Consensus       450 ~~i~~~~~~l~~~l~  464 (467)
                      +++++++++|+++++
T Consensus       355 ~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          355 ENIKEGLERIKEFLN  369 (370)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999875

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=100.00  E-value=4.4e-40  Score=334.06  Aligned_cols=347  Identities=13%  Similarity=0.163  Sum_probs=269.3

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHh--------c--CCCCcCCCCcchHHHHHHHHHHHhCCCCcc--cccCc
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLE--------R--GENKEYLPIEGLAAFNKVTAELLFGADNSV--LKEQR  151 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~--------~--~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~--~~~~~  151 (467)
                      ++|+|+.+++      +..++.+.+++.+...        .  .....|.+..|..++|+++++++...+|..  +++++
T Consensus        37 ~~i~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~  110 (428)
T 1iay_A           37 GVIQMGLAEN------QLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPER  110 (428)
T ss_dssp             SBEECSSCCC------CSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTS
T ss_pred             ceeeeccccc------hhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhh
Confidence            6889987654      3335678887775321        0  012578777889999999999987655544  56889


Q ss_pred             eeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-hhCCCCeEEeeeecCCCCCCChhhHHHHHHc---CC
Q 012238          152 VATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDARVPWSEYRYYDPKTVGLDFEGMIADIKA---AP  227 (467)
Q Consensus       152 i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~-~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~  227 (467)
                      |++  |+|+++++.++  +...+.+||+|+++.|+|..|...+ +..|++++.+|.++++++.+|++.+++.+++   ..
T Consensus       111 i~~--~~G~~~ai~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  186 (428)
T 1iay_A          111 VVM--AGGATGANETI--IFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSN  186 (428)
T ss_dssp             CEE--EEHHHHHHHHH--HHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTT
T ss_pred             EEE--ccChHHHHHHH--HHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcC
Confidence            999  99999999997  4445679999999999999998755 4789999999985445678999999999874   12


Q ss_pred             CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-------CCeEEEEe
Q 012238          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-------GMELLVAQ  300 (467)
Q Consensus       228 ~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~  300 (467)
                      .+++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+...       .++++++.
T Consensus       187 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~viv~~  264 (428)
T 1iay_A          187 IKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP--QFVSIAEILDEQEMTYCNKDLVHIVY  264 (428)
T ss_dssp             CCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS--CCCCHHHHHTSGGGTTSCTTSEEEEE
T ss_pred             CceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCC--CccCHHHhccccccccCCCCcEEEEe
Confidence            3678888999999999999999999999999999999999999999776531  11122233333       47899999


Q ss_pred             cCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHH
Q 012238          301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMM  380 (467)
Q Consensus       301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~  380 (467)
                      ||||.||++|+|+||++  +.++++++.            ++....  +.+.+.++|.++..+|++..+.   .+++++.
T Consensus       265 s~sK~~g~~Glr~G~~~--~~~~~~~~~------------~~~~~~--~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~  325 (428)
T 1iay_A          265 SLSKDMGLPGFRVGIIY--SFNDDVVNC------------ARKMSS--FGLVSTQTQYFLAAMLSDEKFV---DNFLRES  325 (428)
T ss_dssp             ESTTTSSCGGGCEEEEE--ESCHHHHHH------------HHHHHT--TSCCCHHHHHHHHHHTTCHHHH---HHHHHHH
T ss_pred             cchhhcCCCCceEEEEE--eCCHHHHHH------------HHHHHh--cccCCHHHHHHHHHHhcChHHH---HHHHHHH
Confidence            99999999999999996  457777776            444333  2357788899999999876532   2346788


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC----------H-HHHHHHHHcccEEEeCC--------C-
Q 012238          381 AGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----------K-AQSDNMTNKWHVYMTKD--------G-  440 (467)
Q Consensus       381 ~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~----------~-~~~~~ll~~~gI~v~~g--------g-  440 (467)
                      +++++++++.+.+.|+ ++|    +++..+.+|+|+|+.+.          . ++.+++++++||.+.+|        + 
T Consensus       326 ~~~~~~~~~~l~~~L~-~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~  400 (428)
T 1iay_A          326 AMRLGKRHKHFTNGLE-VVG----IKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGW  400 (428)
T ss_dssp             HHHHHHHHHHHHHHHH-HTT----CCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSE
T ss_pred             HHHHHHHHHHHHHHHH-hcC----CcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCE
Confidence            9999999999999999 776    46667778999988652          1 34566666679999875        2 


Q ss_pred             -eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          441 -RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 -Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                       ||+++..+++++++++++|++++++.
T Consensus       401 iRis~~~~~~e~i~~~~~~l~~~l~~~  427 (428)
T 1iay_A          401 FRVCFANMDDGTVDIALARIRRFVGVE  427 (428)
T ss_dssp             EEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEecCCHHHHHHHHHHHHHHHhcc
Confidence             99998558899999999999998764

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=2.2e-40  Score=334.41  Aligned_cols=360  Identities=12%  Similarity=0.116  Sum_probs=280.5

Q ss_pred             cCCCCCCCCcccchHHHhhc--CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHH
Q 012238           60 EGVTMAPPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE  137 (467)
Q Consensus        60 ~~~~~~~~~~i~~~~~~~~~--~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~  137 (467)
                      +++...+++++.++.+.+.+  ..+++.|+|+.|.+    ..+. ++.+.+++ +.+... ...|.+..|..++|+++++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~----~~~~-~~~v~~a~-~~l~~~-~~~y~~~~g~~~l~~~la~   90 (409)
T 2gb3_A           18 DRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQP----DLKT-PEVFFERI-YENKPE-VVYYSHSAGIWELREAFAS   90 (409)
T ss_dssp             HHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCC----CSCC-CTHHHHHH-HHTCCS-SCCCCCTTCCHHHHHHHHH
T ss_pred             HHhhcCCccHHHHHHHHHHHHHhcCCCEEeccCCCC----CCCC-CHHHHHHH-HHHhcC-CCCCCCCCCcHHHHHHHHH
Confidence            34445566666666654432  23457999999988    4343 67888998 777543 3678888899999999999


Q ss_pred             HHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChh
Q 012238          138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE  217 (467)
Q Consensus       138 ~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~  217 (467)
                      ++....|..+++++|++  |+||++++.++  +...+.+||+|+++.|+|..+...++..|++++.++.++++++.+ ++
T Consensus        91 ~~~~~~g~~~~~~~v~~--~~g~t~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~  165 (409)
T 2gb3_A           91 YYKRRQRVDVKPENVLV--TNGGSEAILFS--FAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQ  165 (409)
T ss_dssp             HHHHTSCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CT
T ss_pred             HHHHHhCCCCCHHHEEE--eCCHHHHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HH
Confidence            99877777777899999  99999999998  344467999999999999999999999999999999853234445 88


Q ss_pred             hHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012238          218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (467)
Q Consensus       218 ~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  297 (467)
                      .+++.++   ++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++.   ..+.  +....++++
T Consensus       166 ~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~---~~~~--~~~~~~~~i  237 (409)
T 2gb3_A          166 NLESFIN---ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE---FASA--LSIESDKVV  237 (409)
T ss_dssp             TGGGGCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC---CCCG--GGSCCTTEE
T ss_pred             HHHHhhC---cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCC---CCCc--cccCCCCEE
Confidence            8888776   4678888999999999999999999999999999999999999999876531   1111  112235789


Q ss_pred             EEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l  377 (467)
                      ++.|+||.+|++|+|+||++  +.++++++.            +........ +++.+.+.++..+|+..      .+.+
T Consensus       238 ~~~s~sK~~g~~G~r~G~~~--~~~~~l~~~------------l~~~~~~~~-~~~~~~~~a~~~~l~~~------~~~~  296 (409)
T 2gb3_A          238 VIDSVSKKFSACGARVGCLI--TRNEELISH------------AMKLAQGRL-APPLLEQIGSVGLLNLD------DSFF  296 (409)
T ss_dssp             EEEESTTTTTCGGGCCEEEE--CSCHHHHHH------------HHHHHHHSC-CCCHHHHHHHHHHHTCC------HHHH
T ss_pred             EEecchhccCCccceEEEEE--ECcHHHHHH------------HHHHHhccC-CCCHHHHHHHHHHHhcc------HHHH
Confidence            99999999999999999996  343377776            444444334 67888888888888653      2346


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCccc-ccCCcceEEecCC---CH-HHHHHHHHc-----ccEEEeCC--------
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSF-ILRQIGMFSFTGL---NK-AQSDNMTNK-----WHVYMTKD--------  439 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~-~~~~~g~f~~~~l---~~-~~~~~ll~~-----~gI~v~~g--------  439 (467)
                      ++.+++++++++.+.+.|+ ++|    +.+ ..+.+|+|+|+.+   +. ++.++++++     +||.+.+|        
T Consensus       297 ~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~  371 (409)
T 2gb3_A          297 DFVRETYRERVETVLKKLE-EHG----LKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPG  371 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HTT----CCCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTT
T ss_pred             HHHHHHHHHHHHHHHHHHH-HcC----ceeeeCCCeeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCC
Confidence            7788899999999999999 776    466 6788899988754   34 446667666     59999864        


Q ss_pred             ---C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          440 ---G--RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 ---g--Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                         +  ||+++. +++++++++++|+++++++
T Consensus       372 ~~~~~iRis~~~-~~e~i~~~~~~l~~~l~~~  402 (409)
T 2gb3_A          372 LGKKEIRIACVL-EKDLLSRAIDVLMEGLKMF  402 (409)
T ss_dssp             TTSSEEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCC-CHHHHHHHHHHHHHHHHHh
Confidence               2  999994 8999999999999998754

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=100.00  E-value=6.3e-41  Score=340.71  Aligned_cols=335  Identities=15%  Similarity=0.176  Sum_probs=262.8

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc----CCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeec
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER----GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (467)
                      ++++|||++|++    .++. ++.|.+++.+.+..    .....|.+..|.++||+++++++..  +..+++++|++  |
T Consensus        55 ~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~~~~~~~~i~~--t  125 (432)
T 3ei9_A           55 DAQVISLGIGDT----TEPI-PEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG--GLGIGDDDVFV--S  125 (432)
T ss_dssp             TCCCEECSSCCC----CSCC-CHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHT--TTTCCGGGEEE--E
T ss_pred             CCCeEEccCCCC----CCCC-CHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHc--cCCCCcceEEE--C
Confidence            458999999987    4444 78888888887752    1235788888999999999999863  45566889999  9


Q ss_pred             CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCC------------CeEEeeeecCCCCCCChhhHHHHHHc
Q 012238          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV------------PWSEYRYYDPKTVGLDFEGMIADIKA  225 (467)
Q Consensus       158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~------------~~~~v~~~~~~~~~~d~~~l~~~l~~  225 (467)
                      +|+++++.++   ...+.+||+|++++|+|..|...++..|.            +++.++++++.++..|++.       
T Consensus       126 ~G~~~al~~l---~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------  195 (432)
T 3ei9_A          126 DGAKCDISRL---QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-------  195 (432)
T ss_dssp             SCHHHHHHHH---HHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-------
T ss_pred             CChHHHHHHH---HHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-------
Confidence            9999999874   45578999999999999999999888774            6788888544444455443       


Q ss_pred             CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC
Q 012238          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (467)
Q Consensus       226 ~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (467)
                      . ++++++++++||||||.+++.+++++|+++|++||++||+||+|.++.++..   ..++..+....+++++++||||.
T Consensus       196 ~-~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~---~~~~~~~~~~~~~~i~~~S~SK~  271 (432)
T 3ei9_A          196 V-GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN---PRSIFEIPGAEEVAMETASFSNY  271 (432)
T ss_dssp             C-CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC---CSSGGGSTTGGGTEEEEEESHHH
T ss_pred             C-CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC---CCChhhcCCCCCeEEEEecchhc
Confidence            1 4566788889999999999999999999999999999999999999987632   11222222223578999999999


Q ss_pred             cccCCCccceEEEecCCHHH--------HhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238          306 LGLYAERIGAMNVVCSSSDL--------AARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l  377 (467)
                      ||++|+|+||++   .++++        ++.            +.......+.+++.++|.++..++.+..     .+++
T Consensus       272 ~g~~G~r~G~~~---~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~  331 (432)
T 3ei9_A          272 AGFTGVRLGWTV---IPKKLLYSDGFPVAKD------------FNRIICTCFNGASNISQAGALACLTPEG-----LEAM  331 (432)
T ss_dssp             HCTTTTCCEEEE---CCTTCBCTTSCBHHHH------------HHHHHHHSCCCSCHHHHHHHHHHSSHHH-----HHHH
T ss_pred             cCCcccceEEEE---EChHHhhcchHHHHHH------------HHHHhccccCCCCHHHHHHHHHHHhccc-----HHHH
Confidence            999999999996   55555        444            4444444456788888888888876432     2347


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC----HHHHHHHHHcccEEEeCC--------C--eEE
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----KAQSDNMTNKWHVYMTKD--------G--RIS  443 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~----~~~~~~ll~~~gI~v~~g--------g--Ris  443 (467)
                      ++++++++++++++.+.|+ ++|    +++..+.+++|+|+++.    .+++.++++++||.+.||        +  |||
T Consensus       332 ~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis  406 (432)
T 3ei9_A          332 HKVIGFYKENTNIIIDTFT-SLG----YDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVS  406 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HTT----CCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHH-HCC----ceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEE
Confidence            7889999999999999999 776    57777778889998662    356778888789999886        2  999


Q ss_pred             eccCChhhHHHHHHHHHHHHHh
Q 012238          444 LAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       444 ~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                      ++. +++++++++++|++..+.
T Consensus       407 ~~~-~~e~l~~~l~rl~~~~~~  427 (432)
T 3ei9_A          407 AFG-HRENILEACRRFKQLYKH  427 (432)
T ss_dssp             CCS-CHHHHHHHHHHHHHHHTT
T ss_pred             ecC-CHHHHHHHHHHHHHHhhh
Confidence            987 899999999999987654

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=4.8e-41  Score=341.11  Aligned_cols=348  Identities=14%  Similarity=0.101  Sum_probs=262.3

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHH--HHHHhc--CCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAE--NLMLER--GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~--~~~~~~--~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      +.+|||+.|.| +...+| .++.+.++.  .+.+..  .....|.+..|.++||+++|+++.      +++++|++  |+
T Consensus        33 ~~~i~~~~G~p-~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~------~~~~~i~~--t~  102 (427)
T 3ppl_A           33 NLKLDLTRGKP-SSEQLD-FADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLG------VPVEQVLA--GD  102 (427)
T ss_dssp             CCCEECCCCSC-CHHHHH-TTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHT------SCGGGEEE--CS
T ss_pred             CceEecCCCCC-ChHHCC-CcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhC------CCcceEEE--eC
Confidence            47899999988 211111 123466555  444432  124789888999999999999983      33789999  99


Q ss_pred             CchhHHH--HHHHHHHHhC--C----------CCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHH
Q 012238          159 SGTGSLR--LAAALIERYF--P----------GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK  224 (467)
Q Consensus       159 ggt~al~--l~~~~l~~~~--~----------gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~  224 (467)
                      |+++++.  ++.  ...+.  |          ||+|++++|+|..|...++..|++++.+|++++   ++|++.+++.++
T Consensus       103 G~~~al~~~~~~--~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~  177 (427)
T 3ppl_A          103 ASSLNIMFDVIS--WSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMNED---GPDMDAVEELVK  177 (427)
T ss_dssp             SCHHHHHHHHHH--HHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEETT---EECHHHHHHHTT
T ss_pred             CcHHHHHHHHHH--HHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCCCC---CCCHHHHHHHHh
Confidence            9999994  652  33344  5          899999999999999999999999999999632   499999999985


Q ss_pred             cCCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHH-HhcCCeeEEeccCCCCCCCCCCCChhHHHHHH---hcCCeEEEE
Q 012238          225 AAPGGSFILL-HGCAHNPTGIDPTPEQWEKIADVI-QEKNHIPFFDVAYQGFASGSLDNDASSVRLFA---TRGMELLVA  299 (467)
Q Consensus       225 ~~~~~~~~i~-i~~p~NPTG~~~~~~~l~~l~~~~-~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~---~~~~~~i~~  299 (467)
                      .  +++++++ +++||||||.+++.+++++|+++| ++||++||+||+|.++.++.......++..+.   +..++++++
T Consensus       178 ~--~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  255 (427)
T 3ppl_A          178 N--PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAF  255 (427)
T ss_dssp             S--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEE
T ss_pred             c--CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEE
Confidence            3  4566666 458999999999999999999999 99999999999999977653211111222221   245789999


Q ss_pred             ecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM  379 (467)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~  379 (467)
                      +||||. +++|+|+||++   .++++++.            +.........+++.+.|.++..+|.+..   .+.+++++
T Consensus       256 ~S~SK~-~~~G~r~G~~~---~~~~l~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~  316 (427)
T 3ppl_A          256 TSTSKI-TLAGAGVSFFL---TSAENRKW------------YTGHAGIRGIGPNKVNQLAHARYFGDAE---GVRAVMRK  316 (427)
T ss_dssp             EESTTT-SCTTSSCEEEE---CCHHHHHH------------HHHHHHHHCSCCCHHHHHHHHHHHCSHH---HHHHHHHH
T ss_pred             echhhc-cCcCccEEEEE---cCHHHHHH------------HHHHhhcccCCCCHHHHHHHHHHHhChh---hHHHHHHH
Confidence            999999 67999999995   78888877            5555444566788899999999998722   23455778


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC---HHHHHHHHHcccEEEeCC------------C--eE
Q 012238          380 MAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKD------------G--RI  442 (467)
Q Consensus       380 ~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~g------------g--Ri  442 (467)
                      .++.++++++.+.+.|.+.++.-+.+.+..|++|+|+|+.+.   .+.+.++++++||.+.||            +  ||
T Consensus       317 ~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ri  396 (427)
T 3ppl_A          317 HAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRL  396 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcchHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEE
Confidence            888888888888888762221001256677889999998663   445555566679999983            1  99


Q ss_pred             EeccCChhhHHHHHHHHHHHHHhc
Q 012238          443 SLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       443 s~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      |++..+++++++++++|.++++++
T Consensus       397 s~~~~~~~~i~~~~~~l~~~l~~~  420 (427)
T 3ppl_A          397 APSLPPVEELEVAMDGVATCVLLA  420 (427)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHH
Confidence            998777899999999999998753

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=100.00  E-value=3.1e-41  Score=343.30  Aligned_cols=360  Identities=13%  Similarity=0.072  Sum_probs=275.6

Q ss_pred             CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           80 DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        80 ~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      ..++++|||+.|.+    ..++ ++.+.+++.+.+..+....|.+..|.+++|+++++++...+|..+++++|++  |+|
T Consensus        41 ~~g~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~--t~g  113 (437)
T 3g0t_A           41 ATGTKFCRMEMGVP----GLPA-PQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVP--TVG  113 (437)
T ss_dssp             HHTCCCEECCCCSC----CSCC-CHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESH
T ss_pred             hcCCCEEeccCcCC----CCCC-CHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEE--eCC
Confidence            34568999999987    4443 7889999988876443377988889999999999999876677777899999  999


Q ss_pred             chhHHHHHHHHHHHh--CCCC--EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238          160 GTGSLRLAAALIERY--FPGA--KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (467)
Q Consensus       160 gt~al~l~~~~l~~~--~~gd--~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i  235 (467)
                      +++++.++  +...+  .+||  +|+++.|+|..+...++..|++++.++++ ++++.+|++.+++.++.  .+++++++
T Consensus       114 ~t~al~~~--~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~--~~~~~v~l  188 (437)
T 3g0t_A          114 SMQGCFVS--FLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF-EYRGEKLREKLESYLQT--GQFCSIIY  188 (437)
T ss_dssp             HHHHHHHH--HHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG-GGCTTHHHHHHHHHHTT--TCCCEEEE
T ss_pred             HHHHHHHH--HHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec-CCCCccCHHHHHHHHhc--CCceEEEE
Confidence            99999998  44445  7999  99999999999999999999999999985 55677899999999943  56778888


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCCh---hHH-HHHHhcCCeEEEEecCccCcccCCC
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA---SSV-RLFATRGMELLVAQSYSKNLGLYAE  311 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~---~~~-~~~~~~~~~~i~~~S~SK~~~~~G~  311 (467)
                      ++||||||.+++.+++++|+++|++||+++|+||+|.++.++.. ...   .++ ..+....++++++.|+||.++++|+
T Consensus       189 ~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~  267 (437)
T 3g0t_A          189 SNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD-YSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQ  267 (437)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSC-CCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGG
T ss_pred             eCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCC-cCcccccchhhccCCCCCcEEEEEcCccCCCCccc
Confidence            99999999999999999999999999999999999998877521 111   000 1222235789999999999999999


Q ss_pred             ccceEEEecCCHHHHh-hhhhhhHHH------HHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012238          312 RIGAMNVVCSSSDLAA-RCCEVAVIQ------VKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  384 (467)
Q Consensus       312 RiG~~~~v~~~~~~~~-~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~  384 (467)
                      |+||++   .++++++ . .+.....      ....+.........+++.+.+.++..+|++..   .|..++++.++++
T Consensus       268 r~G~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~  340 (437)
T 3g0t_A          268 RIGVLM---ISGKLYERE-YPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACN---DGEYNFRDSVIEY  340 (437)
T ss_dssp             CCEEEE---ECHHHHHCB-CGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHH---TTSCCHHHHHHHH
T ss_pred             eeEEEE---ECHHHhhhh-hhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcH---hHHHHHHHHHHHH
Confidence            999996   5666655 2 0000000      00002222222345677888888887775431   1222267888999


Q ss_pred             HHHHHHHHHHhhhccCCCCCcccc-------cCCcceEEecCC---CHH-HHHHHHHcccEEEeCC--------C--eEE
Q 012238          385 KNVRQKLFDSLSAKDKSGKDWSFI-------LRQIGMFSFTGL---NKA-QSDNMTNKWHVYMTKD--------G--RIS  443 (467)
Q Consensus       385 ~~~r~~l~~~l~~~~g~~~~~~~~-------~~~~g~f~~~~l---~~~-~~~~ll~~~gI~v~~g--------g--Ris  443 (467)
                      +++++.+.+.|+ ++|    +.+.       ++.+++|+|+.+   +.+ +.+.|++ +||.+.++        +  |||
T Consensus       341 ~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gi~v~~~~~~~~~~~~~iRis  414 (437)
T 3g0t_A          341 GRKARIMKKMFL-DNG----FNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVR-YGMCAITLKTTGSKRNEAMRIC  414 (437)
T ss_dssp             HHHHHHHHHHHH-TTT----EEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHH-TTEECEESTTTTCCCTTCEEEE
T ss_pred             HHHHHHHHHHHH-HcC----CEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHH-cCeEEeeccccCCCCCCEEEEE
Confidence            999999999999 776    5666       437888998754   444 4556655 59999887        2  999


Q ss_pred             eccCChhhHHHHHHHHHHHHHh
Q 012238          444 LAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       444 ~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                      ++..+++++++++++|++++++
T Consensus       415 ~~~~~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          415 TSLLPESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             CSSSCGGGHHHHHHHHHHHHHH
T ss_pred             EecCCHHHHHHHHHHHHHHHhc
Confidence            9977889999999999998764

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=1.6e-40  Score=337.20  Aligned_cols=349  Identities=13%  Similarity=0.151  Sum_probs=270.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCCCCcc-cccCceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSV-LKEQRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~-~~~~~i~~~~t~  158 (467)
                      +++.|||+.|.+ +..+.  +++.+.+++.+.+...  ....|.+..|.+++|+++++++...+|.. +++++|++  |+
T Consensus        42 ~~~~idl~~g~~-~~~~~--~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~--t~  116 (425)
T 1vp4_A           42 DKDAISFGGGVP-DPETF--PRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIF--TV  116 (425)
T ss_dssp             STTCEECCCCSC-CGGGS--CHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEE--EE
T ss_pred             CCCceeCCCCCC-CcccC--CHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEE--ec
Confidence            457999999987 22222  3788899888877542  12578888899999999999985443444 56789999  99


Q ss_pred             CchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC-----CCCcEEE
Q 012238          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-----PGGSFIL  233 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~-----~~~~~~i  233 (467)
                      |+++++.++  +...+.+||+|+++.|+|..+...++..|++++.+|.++ +  ++|++.+++.+++.     ..+++++
T Consensus       117 G~~~al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~--~~d~~~l~~~l~~~~~~~~~~~~~~v  191 (425)
T 1vp4_A          117 GSQQALDLI--GKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLED-D--GMDLNVLERKLSEFDKNGKIKQVKFI  191 (425)
T ss_dssp             HHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-T--EECHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred             cHHHHHHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCC-C--CCCHHHHHHHHHhhhhcccCCCceEE
Confidence            999999997  344467999999999999999999999999999999853 2  49999999998741     1256676


Q ss_pred             -EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCc
Q 012238          234 -LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER  312 (467)
Q Consensus       234 -~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R  312 (467)
                       ++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+ +..++++++.||||.++ +|+|
T Consensus       192 ~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~-~~~~~~i~~~s~sK~~~-~G~r  267 (425)
T 1vp4_A          192 YVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE--TVDPIFKI-GGPERVVLLNTFSKVLA-PGLR  267 (425)
T ss_dssp             EEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC--CCCCHHHH-HCTTTEEEEEESTTTTC-GGGC
T ss_pred             EECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC--CCcCHHHh-CCCCCEEEEeccccccc-cccc
Confidence             6899999999999999999999999999999999999999887532  11223233 34467899999999999 9999


Q ss_pred             cceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          313 IGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  392 (467)
Q Consensus       313 iG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~  392 (467)
                      +||++   .++++++.            +.........+++.+.|.++..+|++..    +.+++++.+++++++++.+.
T Consensus       268 ~G~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~l~  328 (425)
T 1vp4_A          268 IGMVA---GSKEFIRK------------IVQAKQSADLCSPAITHRLAARYLERYD----LLEQLKPTIELYRRKRTVML  328 (425)
T ss_dssp             EEEEE---CCHHHHHH------------HHHHHHHHHSSCCHHHHHHHHHHHHHSC----HHHHTHHHHHHHHHHHHHHH
T ss_pred             eEEEe---eCHHHHHH------------HHHHhhhhcCCCCHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHH
Confidence            99996   67888777            4433333334567788888888876432    24457788999999999999


Q ss_pred             HHhhhccCCCC--CcccccCCcceEEecCCC-----HHHHHHHHHcccEEEeCC----------C--eEEeccCChhhHH
Q 012238          393 DSLSAKDKSGK--DWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD----------G--RISLAGLSLAKCE  453 (467)
Q Consensus       393 ~~l~~~~g~~~--~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g----------g--Ris~~~~~~~~i~  453 (467)
                      +.|+ +.. |+  ++.+..+.+|+|+|+.+.     .++.+.++++ ||.+.+|          +  ||+++..++++++
T Consensus       329 ~~L~-~~~-~~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~  405 (425)
T 1vp4_A          329 NALE-EYF-SDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIV  405 (425)
T ss_dssp             HHHH-HHS-TTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECSSSCHHHHH
T ss_pred             HHHH-HhC-CCCCceEEecCCccEEEEEEcCCCCCHHHHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeCCCCHHHHH
Confidence            9998 641 11  256667888999988552     3456777766 9999874          2  9999876789999


Q ss_pred             HHHHHHHHHHHhc
Q 012238          454 YLADAIIDSYHNV  466 (467)
Q Consensus       454 ~~~~~l~~~l~~~  466 (467)
                      +++++|+++++++
T Consensus       406 ~~l~~l~~~l~~~  418 (425)
T 1vp4_A          406 EGIKRLREVVLEY  418 (425)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988753

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=100.00  E-value=1.5e-40  Score=332.83  Aligned_cols=344  Identities=12%  Similarity=0.085  Sum_probs=270.8

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      .++|||+.|.+    ..+. ++.+.+++.+.+.... ..|.+.  ..++++++++++...+|..+++++|++  |+|+++
T Consensus        27 ~~~i~~~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~--~~g~~~   96 (391)
T 3dzz_A           27 EKELPMWIAEM----DFKI-APEIMASMEEKLKVAA-FGYESV--PAEYYKAVADWEEIEHRARPKEDWCVF--ASGVVP   96 (391)
T ss_dssp             TTCEECCSSCC----SSCC-CHHHHHHHHHHHTTCC-CCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEE--ESCHHH
T ss_pred             CCceeccccCC----CCCC-CHHHHHHHHHHHhcCc-CCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEE--CCCHHH
Confidence            48999999976    5554 8899999999886543 677655  689999999998876676677899999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeee-cCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      ++.++  +...+.+||+|+++.|+|..+...++..|++++.+|++ ++.++.+|++.+++.+++  ++++++++++||||
T Consensus        97 a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~i~~p~np  172 (391)
T 3dzz_A           97 AISAM--VRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT--PSVRMMVFCNPHNP  172 (391)
T ss_dssp             HHHHH--HHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS--TTEEEEEEESSBTT
T ss_pred             HHHHH--HHHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc--cCceEEEEECCCCC
Confidence            99998  44456799999999999999999999999999999985 344556999999999974  47788889999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEecCccCcccCCCccceEEEec
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      ||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+.. ..++++++.|+||.+|++|+|+||++  +
T Consensus       173 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~--~  248 (391)
T 3dzz_A          173 IGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDE--DITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAI--I  248 (391)
T ss_dssp             TTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEE--C
T ss_pred             CCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCC--CceehhhcCccccCcEEEEEeChhhccccchhheEEE--E
Confidence            99999999999999999999999999999999887531  1112211111 13578999999999999999999996  3


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhcc-CccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLAR-PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-  398 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~-  398 (467)
                      .++++++.            +..... ....+++.+.+.++..+|...      .+.+++.+++++++++.+.+.|+ + 
T Consensus       249 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~-~~  309 (391)
T 3dzz_A          249 PNPDLRAR------------AEESFFLAGIGEPNLLAIPAAIAAYEEG------HDWLRELKQVLRDNFAYAREFLA-KE  309 (391)
T ss_dssp             CSHHHHHH------------HHHHHHHHTCSSCCTTHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             CCHHHHHH------------HHHHHHhhccCCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHH-hh
Confidence            45888777            433322 112345556666766666432      23467888999999999999998 7 


Q ss_pred             cCCCCCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCCC----------eEEeccCChhhHHHHHHHHHHH
Q 012238          399 DKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       399 ~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                      ++   ++.+..+.+++++|+.+     +. ++.+++++++||.+.+|.          ||+++. +++++++++++|.++
T Consensus       310 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~  385 (391)
T 3dzz_A          310 VP---EVKVLDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLAC-PKELVIDGMQRLKQG  385 (391)
T ss_dssp             CT---TSEECCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCS-CHHHHHHHHHHHHHH
T ss_pred             CC---CcEEeccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHH
Confidence            42   16778889999888643     44 445666666799999861          999996 899999999999999


Q ss_pred             HHhcC
Q 012238          463 YHNVS  467 (467)
Q Consensus       463 l~~~~  467 (467)
                      +++++
T Consensus       386 l~~~~  390 (391)
T 3dzz_A          386 VLNLN  390 (391)
T ss_dssp             HHTCC
T ss_pred             HHHhh
Confidence            98763

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=100.00  E-value=9e-40  Score=329.40  Aligned_cols=363  Identities=17%  Similarity=0.208  Sum_probs=275.7

Q ss_pred             CCCcccchHHHhhc--CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhC
Q 012238           66 PPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFG  141 (467)
Q Consensus        66 ~~~~i~~~~~~~~~--~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~  141 (467)
                      +++.+..+.+...+  ..+.+.|||+.|.+ +..++  +++.+.+++.+.+...  ... |.+..|..++|+++++++..
T Consensus        15 ~~~~~~~~~~~~~~~~~~g~~~idl~~g~~-~~~~~--~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~   90 (407)
T 2zc0_A           15 KGSALADVMKKASELQKKGVKLISLAAGDP-DPELI--PRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKK   90 (407)
T ss_dssp             CCCHHHHHHHHHHHHHHSSCCCEECCSCCC-CTTTS--CHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhcccCCCCceEeCCCCCC-CchhC--CHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHH
Confidence            33444444443331  22337899999987 22222  3788898888877542  125 88888999999999999865


Q ss_pred             CCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHH
Q 012238          142 ADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA  221 (467)
Q Consensus       142 ~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~  221 (467)
                      .+|..+++++|++  |+|+++++.++  +...+.+||+|+++.|+|..+...++..|++++.+|.++ +  ++|++.+++
T Consensus        91 ~~g~~~~~~~v~~--t~g~t~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~--~~d~~~l~~  163 (407)
T 2zc0_A           91 YDHLEVSPENIVI--TIGGTGALDLL--GRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDN-D--GMRVDLLEE  163 (407)
T ss_dssp             HSCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-T--EECHHHHHH
T ss_pred             hcCCCCCcceEEE--ecCHHHHHHHH--HHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCC-C--CCCHHHHHH
Confidence            4555566889999  99999999998  333467999999999999999999999999999999853 2  499999999


Q ss_pred             HHH----cCCCCcEEE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012238          222 DIK----AAPGGSFIL-LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (467)
Q Consensus       222 ~l~----~~~~~~~~i-~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~  296 (467)
                      .++    +. .+++++ ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+ +..+++
T Consensus       164 ~l~~~~~~~-~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~-~~~~~~  239 (407)
T 2zc0_A          164 KIKELKAKG-QKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGG--DIVPLKAL-DNEGRV  239 (407)
T ss_dssp             HHHHHHHTT-CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCS--SCCCGGGG-CSSCCE
T ss_pred             HHHhhhccc-CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCC--CCCChhhc-CCCCCE
Confidence            987    32 255665 6889999999999999999999999999999999999999877431  11112112 223578


Q ss_pred             EEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHH-H
Q 012238          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWK-A  375 (467)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~-~  375 (467)
                      ++++||||.++ +|+|+||++   .++++++.            +.........+++.+.|.++..+|+...    +. +
T Consensus       240 i~~~s~sK~~~-~G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~  299 (407)
T 2zc0_A          240 IVAGTLSKVLG-TGFRIGWII---AEGEILKK------------VLMQKQPIDFCAPAISQYIALEYLKRGY----FEKY  299 (407)
T ss_dssp             EEEEESTTTTC-TTSCCEEEE---CCHHHHHH------------HHHHHTTTTSSSCHHHHHHHHHHHHTTH----HHHH
T ss_pred             EEEcccccccC-CCcceEEEe---cCHHHHHH------------HHHHHHhhcCCCCHHHHHHHHHHHHcCC----chHH
Confidence            99999999999 999999996   67887777            5554444445667888888888887642    23 4


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC----CH-HHHHHHHHcccEEEeCC----------C
Q 012238          376 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKD----------G  440 (467)
Q Consensus       376 ~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~g----------g  440 (467)
                      ++++.+++++++++.+.+.|+ +.. |+ +.+..+.+|+|+|+.+    +. ++.+.+++++||.+.+|          +
T Consensus       300 ~~~~~~~~~~~~~~~l~~~L~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~  376 (407)
T 2zc0_A          300 HLEGALLGYKEKRDIMLKALE-NHL-PN-AEFTKPIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKN  376 (407)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHH-HHC-TT-SCBCCCSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhC-CC-CEEecCCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCC
Confidence            467888999999999999998 641 11 5666778888988755    33 45666666569999875          2


Q ss_pred             --eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          441 --RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 --Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                        ||+++..+++++++++++|+++++++
T Consensus       377 ~iRis~~~~~~~~i~~~~~~l~~~l~~~  404 (407)
T 2zc0_A          377 AIRLNFSRPSKEEIPIGIKKLAKLYKEK  404 (407)
T ss_dssp             EEEEECSSSCTTHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence              99998767899999999999998764

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=100.00  E-value=1.5e-40  Score=332.30  Aligned_cols=333  Identities=18%  Similarity=0.153  Sum_probs=263.4

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      ++.|||+.|.+    ..+. ++.+.+++.+.+..  ...|.+..|.+++|+++++++...      +++|++  |+||++
T Consensus        25 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~~~~------~~~v~~--~~g~~~   89 (381)
T 1v2d_A           25 LGAVNLGQGFP----SNPP-PPFLLEAVRRALGR--QDQYAPPAGLPALREALAEEFAVE------PESVVV--TSGATE   89 (381)
T ss_dssp             HTCEECCCCSC----SSCC-CHHHHHHHHHHTTT--SCSCCCTTCCHHHHHHHHHHHTSC------GGGEEE--ESSHHH
T ss_pred             CCeEEecCCCC----CCCC-CHHHHHHHHHHHHH--hcCCCCCCCCHHHHHHHHHhcCCC------hhhEEE--cCChHH
Confidence            46899999987    3443 78899999888754  357887779999999999996433      678988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeec-CCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      ++.++  +...+.+||+|++++|+|..+...++..|++++.++.+. ++++.+|++.+++.++   ++++++++++|+||
T Consensus        90 a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~np  164 (381)
T 1v2d_A           90 ALYVL--LQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT---PRTRALLLNTPMNP  164 (381)
T ss_dssp             HHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC---TTEEEEEEESSCTT
T ss_pred             HHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcC---cCCEEEEECCCCCC
Confidence            99998  334467999999999999999999999999999999851 1346799999998886   56788888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|+++|++||+++|+||+|.++.++..   ..++..+  ..+.++++.|+||.++++|+|+||++   .
T Consensus       165 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~---~~~~~~~--~~~~~~~~~s~sK~~~~~G~r~G~~~---~  236 (381)
T 1v2d_A          165 TGLVFGERELEAIARLARAHDLFLISDEVYDELYYGER---PRRLREF--APERTFTVGSAGKRLEATGYRVGWIV---G  236 (381)
T ss_dssp             TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC---CCCHHHH--CTTTEEEEEEHHHHTTCGGGCCEEEE---C
T ss_pred             CCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC---CCCHHHh--cCCCEEEEeechhhcCCcccceEEEE---e
Confidence            99999999999999999999999999999999876321   1122222  34678999999999999999999996   6


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +.........+++.+.|.++..+|....    +.+++++.+++++++++++.+.|+ +.| 
T Consensus       237 ~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~l~~~L~-~~g-  298 (381)
T 1v2d_A          237 PKEFMPR------------LAGMRQWTSFSAPTPLQAGVAEALKLAR----REGFYEALREGYRRRRDLLAGGLR-AMG-  298 (381)
T ss_dssp             CTTTHHH------------HHHHHHHHTSSCCHHHHHHHHHHHHHHH----HTTHHHHHHHHHHHHHHHHHHHHH-HTT-
T ss_pred             CHHHHHH------------HHHHHhhcccCCCcHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHHHHHHHHHH-HCC-
Confidence            7777776            4333332234567777777777765321    123467888999999999999999 766 


Q ss_pred             CCCcccccCCcceEEecCCCH-HHHHHHHHcccEEEeCC----------C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          402 GKDWSFILRQIGMFSFTGLNK-AQSDNMTNKWHVYMTKD----------G--RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l~~-~~~~~ll~~~gI~v~~g----------g--Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                         +++..+.+|+|+|+.+.. + +.++++++||.+.+|          +  ||+++. +++++++++++|.+++++.
T Consensus       299 ---~~~~~~~~~~~~~~~~~~~~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~-~~~~i~~~~~~l~~~l~~~  371 (381)
T 1v2d_A          299 ---LRVYVPEGTYFLMAELPGWD-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVVNSP  371 (381)
T ss_dssp             ---CCEECCSBSSEEEEECTTCC-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHHHC---
T ss_pred             ---CEecCCCcceEEEEecChHh-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhhc
Confidence               577778888899886532 3 666777789999874          2  999998 8999999999999988654

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=100.00  E-value=1.6e-40  Score=336.75  Aligned_cols=357  Identities=16%  Similarity=0.099  Sum_probs=264.8

Q ss_pred             ccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHH--hcC-CCCcCCCCcchHHHHHHHHHHHhCCCCcc
Q 012238           70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML--ERG-ENKEYLPIEGLAAFNKVTAELLFGADNSV  146 (467)
Q Consensus        70 i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~--~~~-~~~~Y~~~~G~~~lr~aia~~l~~~~~~~  146 (467)
                      +.....++...  ..+|||+.|.| +...+|+ ++.+++++.+.+  ..+ ....|.+..|.++||+++|+++.      
T Consensus        21 ~~~~~~~l~~~--~~~i~l~~g~~-~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~------   90 (422)
T 3d6k_A           21 VTAKYAELKAK--NLSLDLTRGKP-SAEQLDL-SNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALG------   90 (422)
T ss_dssp             HHHHHHHHHHT--TCCEECCCCSC-CHHHHHT-TGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHT------
T ss_pred             HHHHHHHHhcc--CCeEeCCCCCC-ChhhCCC-cHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhC------
Confidence            44444445432  25899999998 2111443 556776665442  121 24689999999999999999973      


Q ss_pred             cccCceeeeecCCchhHH--HHHHHHHHHhCC------------CCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCC
Q 012238          147 LKEQRVATVQGLSGTGSL--RLAAALIERYFP------------GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTV  212 (467)
Q Consensus       147 ~~~~~i~~~~t~ggt~al--~l~~~~l~~~~~------------gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~  212 (467)
                      +++++|++  |+|+++++  .++...  ...+            +|+|+++.|+|..|...++..|++++.+|++++   
T Consensus        91 ~~~~~i~~--t~G~~~al~l~~~~~~--l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~---  163 (422)
T 3d6k_A           91 LPADLVVA--QDGSSLNIMFDLISWS--YTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDE---  163 (422)
T ss_dssp             CCGGGEEE--CSSCHHHHHHHHHHHH--HHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---
T ss_pred             CChhHEEE--ecchHHHHHHHHHHHH--hcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCC---
Confidence            34789999  99999997  454222  2234            348999999999999999999999999999632   


Q ss_pred             CCChhhHHHHHHcCCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHHH-hcCCeeEEeccCCC--CCCCCCCCChhHHHH
Q 012238          213 GLDFEGMIADIKAAPGGSFILL-HGCAHNPTGIDPTPEQWEKIADVIQ-EKNHIPFFDVAYQG--FASGSLDNDASSVRL  288 (467)
Q Consensus       213 ~~d~~~l~~~l~~~~~~~~~i~-i~~p~NPTG~~~~~~~l~~l~~~~~-~~~~~li~Deay~~--~~~~~~~~~~~~~~~  288 (467)
                      ++|++.+++.+++  .++++++ +++||||||.+++.+++++|+++|+ +||++||+||+|..  |.+++  ....++..
T Consensus       164 g~d~~~l~~~l~~--~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~--~~~~~~~~  239 (422)
T 3d6k_A          164 GPDMGVVRELVKD--PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEF--PIVHNVIE  239 (422)
T ss_dssp             EECHHHHHHHHTS--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC--CCCCCHHH
T ss_pred             CCCHHHHHHHHhc--CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCC--CCCcChhh
Confidence            4999999999973  3566666 7999999999999999999999999 99999999999985  54331  11122222


Q ss_pred             H---HhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhC
Q 012238          289 F---ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVG  365 (467)
Q Consensus       289 ~---~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~  365 (467)
                      +   .+..+++++++||||. +++|+|+||++   .++++++.            +.........+++.++|.++..+|+
T Consensus       240 ~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~---~~~~l~~~------------l~~~~~~~~~~~~~~~q~a~~~~l~  303 (422)
T 3d6k_A          240 FAQAAGNPNRFWFMSSTSKI-THAGSGVSFFA---SSKENIEW------------YASHANVRGIGPNKLNQLAHAQFFG  303 (422)
T ss_dssp             HHHHTTCTTCEEEEEESTTT-SCTTSSCEEEE---CCHHHHHH------------HHHHHHHHCSCCCHHHHHHHHHHHC
T ss_pred             HhhccCCCCcEEEEcChhhh-cCcccceEEEE---eCHHHHHH------------HHHHHHhhcCCCCHHHHHHHHHHHh
Confidence            2   2345689999999999 67999999996   77888877            5555444456788899999999998


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC---CHHHHHHHHHcccEEEeCC---
Q 012238          366 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKD---  439 (467)
Q Consensus       366 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~g---  439 (467)
                      +.   +.|.+++++.++.++++++.+.+.|++.++--+.+.+..|++|+|+|+.+   +.+.+.++++++||.+.+|   
T Consensus       304 ~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~g~~  380 (422)
T 3d6k_A          304 DV---AGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGTASRVVELAKEAGIALTGAGSS  380 (422)
T ss_dssp             SH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTTCHHHHHHHHHHTTEECCCTTTT
T ss_pred             Cc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCCCHHHHHHHHHHCCeEEEcCccc
Confidence            72   12355678888999999998888886211100114556788999999865   3555666777789999882   


Q ss_pred             ---------C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          440 ---------G--RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 ---------g--Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                               +  |||++..+++++++++++|+++++++
T Consensus       381 f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~  418 (422)
T 3d6k_A          381 FPLHNDPNNENIRLAPSLPPVAELEVAMDGFATCVLMA  418 (422)
T ss_dssp             SGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence                     2  99998558899999999999988753

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=100.00  E-value=3.2e-40  Score=330.55  Aligned_cols=340  Identities=12%  Similarity=0.073  Sum_probs=268.1

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.++|+|+.|.+    ..++ ++.+.+++.+.+.... ..|.+  +..++++++++++....|..+++++|++  |+|++
T Consensus        31 ~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~--~~g~~  100 (391)
T 4dq6_A           31 TNDLLPMWVADM----DFKA-APCIIDSLKNRLEQEI-YGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIY--SPGVI  100 (391)
T ss_dssp             CSCSEECCSSSC----SSCC-CHHHHHHHHHHHTTCC-CCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESCHH
T ss_pred             CCCceeccccCC----CCCC-CHHHHHHHHHHHhCCC-CCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEE--cCChH
Confidence            458999999976    5554 7899999999886543 56654  5689999999998776666667889999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeee--cCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY--DPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~--~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +++.++  +...+.+||+|+++.|+|..+...++..|++++.+|++  ++.++.+|++.+++.++   + ++++++++|+
T Consensus       101 ~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~-~~~v~i~~p~  174 (391)
T 4dq6_A          101 PAISLL--INELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIK---D-VKLFILCNPH  174 (391)
T ss_dssp             HHHHHH--HHHHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCT---T-EEEEEEESSB
T ss_pred             HHHHHH--HHHhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh---c-CCEEEEECCC
Confidence            999998  44446799999999999999999999999999999986  34456799999999997   3 7889999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcCCeEEEEecCccCcccCCCccceEEE
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAERIGAMNV  318 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (467)
                      ||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+. +..++++++.|+||.+|++|+|+||++ 
T Consensus       175 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~-  251 (391)
T 4dq6_A          175 NPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH--KHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVV-  251 (391)
T ss_dssp             TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEE-
T ss_pred             CCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCC--CccCHHHcCccccCcEEEEEechhhccCcccceEEEE-
Confidence            9999999999999999999999999999999999887532  111111111 113578999999999999999999996 


Q ss_pred             ecCCHHHHhhhhhhhHHHHHHHHHhhccC-ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012238          319 VCSSSDLAARCCEVAVIQVKSQLKRLARP-MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA  397 (467)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~  397 (467)
                       +.++++++.            +...... ...+++.+++.++..+|.+.      .+.+++.+++++++++.+.+.|+ 
T Consensus       252 -~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~-  311 (391)
T 4dq6_A          252 -LPDEKDYKL------------LDDAFTRIDIKRNNCFSLVATEASYNNG------ESWLESFLEYLESNIDFAIKYIN-  311 (391)
T ss_dssp             -CCSHHHHHH------------HHHHHHHTTCCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             -eCCHHHHHH------------HHHHHHhhcCCCCCHHHHHHHHHHHhch------HHHHHHHHHHHHHHHHHHHHHHH-
Confidence             455577776            4433222 23467777777777766532      23367888999999999999998 


Q ss_pred             c-cCCCCCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHH
Q 012238          398 K-DKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAII  460 (467)
Q Consensus       398 ~-~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~  460 (467)
                      + ++   .+.+..+++++++|+.+     +. ++.+.+++++||.+.+|        +  ||+++. +++++++++++|+
T Consensus       312 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~  387 (391)
T 4dq6_A          312 ENMP---KLKVRKPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLAC-PRSMLEEALIRIK  387 (391)
T ss_dssp             HHCT---TSEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCS-CHHHHHHHHHHHH
T ss_pred             hhCC---CCEecCCCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcC-CHHHHHHHHHHHH
Confidence            6 32   16788899999988744     33 44666666569999885        2  999996 8899999999999


Q ss_pred             HHHH
Q 012238          461 DSYH  464 (467)
Q Consensus       461 ~~l~  464 (467)
                      ++++
T Consensus       388 ~~l~  391 (391)
T 4dq6_A          388 NAIN  391 (391)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8863

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=100.00  E-value=2.8e-40  Score=332.23  Aligned_cols=343  Identities=12%  Similarity=0.105  Sum_probs=267.0

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      +++|||+.|.+    +.++ ++.+.+++.+.+... ...|.+.  ..++|+++++++....|..+++++|++  |+|+++
T Consensus        31 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~--t~g~~~  100 (399)
T 1c7n_A           31 NEVVPLSVADM----EFKN-PPELIEGLKKYLDET-VLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIIN--TAGVVP  100 (399)
T ss_dssp             TTCCCCCSSSC----SSCC-CHHHHHHHHHHHHHC-CCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEE--ESSHHH
T ss_pred             CCceeeeecCC----CCCC-CHHHHHHHHHHHhcC-CCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEE--cCCHHH
Confidence            47899999976    4443 788999998887543 3678654  899999999998654455556889999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCC-CCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      ++.++  +...+.+||+|+++.|+|..+...++..|++++.+|.++++ ++.+|++.+++.+++  .+++++++++||||
T Consensus       101 a~~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~np  176 (399)
T 1c7n_A          101 AVFNA--VREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD--KNNKALLFCSPHNP  176 (399)
T ss_dssp             HHHHH--HHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC--TTEEEEEEESSBTT
T ss_pred             HHHHH--HHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhcc--CCCcEEEEcCCCCC
Confidence            99998  34446789999999999999999999999999999885222 356999999999974  46778888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEecCccCcccCCCccceEEEec
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      ||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+.. ..++++++.|+||.++++|+|+||++  +
T Consensus       177 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~--~  252 (399)
T 1c7n_A          177 VGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY--EHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNII--I  252 (399)
T ss_dssp             TTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEE--C
T ss_pred             CCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CcccHHHcCccccCcEEEEEeChhhccccchheEEEE--E
Confidence            99999999999999999999999999999999887531  1111211111 13578999999999999999999996  4


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhccCc-cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-  398 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~-  398 (467)
                      .++++++.            +....... +.+++.+++.++..+|.+.      .+.+++.+++++++++.+.+.|+ + 
T Consensus       253 ~~~~~~~~------------l~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~  313 (399)
T 1c7n_A          253 KNPDIRER------------FTKSRDATSGMPFTTLGYKACEICYKEC------GKWLDGCIKVIDKNQRIVKDFFE-VN  313 (399)
T ss_dssp             CCHHHHHH------------HHHHHHHTTCCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             CCHHHHHH------------HHHHHhhcccCCCCHHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHHH-hh
Confidence            45677776            44433333 2356788888877777532      23467888999999999999998 6 


Q ss_pred             cCCCCCcccccCCcceEEecCC-----CHH-HHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHH
Q 012238          399 DKSGKDWSFILRQIGMFSFTGL-----NKA-QSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       399 ~g~~~~~~~~~~~~g~f~~~~l-----~~~-~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                      ++  + +.+..+.+++++|+.+     +.+ +.+.+++++||.+.+|        +  ||+++. .++++++++++|.++
T Consensus       314 ~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~l~~~l~~l~~~  389 (399)
T 1c7n_A          314 HP--E-IKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKA  389 (399)
T ss_dssp             CT--T-SBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHH
T ss_pred             CC--C-CeEecCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc-CHHHHHHHHHHHHHH
Confidence            52  1 5777888999888644     343 4566665679999875        2  999998 588999999999999


Q ss_pred             HHhc
Q 012238          463 YHNV  466 (467)
Q Consensus       463 l~~~  466 (467)
                      ++++
T Consensus       390 l~~~  393 (399)
T 1c7n_A          390 LKDL  393 (399)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=100.00  E-value=4.9e-39  Score=317.83  Aligned_cols=327  Identities=17%  Similarity=0.197  Sum_probs=263.3

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      .++++|||+.|.+    ..++ ++.+++++.+.+..  ...| |..+.+++|+++++++..      ++++|++  |+|+
T Consensus        14 ~~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~--~~~y-~~~~~~~l~~~la~~~~~------~~~~i~~--~~g~   77 (354)
T 3ly1_A           14 STDNPIRINFNEN----PLGM-SPKAQAAARDAVVK--ANRY-AKNEILMLGNKLAAHHQV------EAPSILL--TAGS   77 (354)
T ss_dssp             CSSSCEECSSCCC----SSCC-CHHHHHHHHHTGGG--TTSC-CHHHHHHHHHHHHHHTTS------CGGGEEE--ESHH
T ss_pred             CCCceEEccCCCC----CCCC-CHHHHHHHHHHHhh--CcCC-CCCchHHHHHHHHHHhCC------ChHHEEE--eCCh
Confidence            4468999999976    4544 78999999988764  3677 677899999999999742      3789999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      ++++.++  +...+.+||+|+++.|+|..+...++..|++++.++.+  .++++|++.+++.+++. ++++++++++|||
T Consensus        78 ~~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~l~~~-~~~~~v~l~~p~n  152 (354)
T 3ly1_A           78 SEGIRAA--IEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKML--DNWAFDIEGLKAAVAAY-SGPSIVYLVNPNN  152 (354)
T ss_dssp             HHHHHHH--HHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCC--TTSCCCHHHHHHHHHTC-SSCEEEEEESSCT
T ss_pred             HHHHHHH--HHHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHHHhccC-CCCCEEEEeCCCC
Confidence            9999998  34446799999999999999999999999999999984  35889999999999842 3678888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC-CeEEEEecCccCcccCCCccceEEEe
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG-MELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      |||.+++.+++.+|+++| ++|+++|+||+|.++.++..   ..+........ +++++++||||.+|++|+|+||++  
T Consensus       153 ptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~--  226 (354)
T 3ly1_A          153 PTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPR---FRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAV--  226 (354)
T ss_dssp             TTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTT---CCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEE--
T ss_pred             CcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccc---cCCHHHHhhhcCCCEEEEeeChhhccChhhhheeee--
Confidence            999999999999999999 89999999999998887531   11222333444 789999999999999999999996  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                       .++++++.            +......  .+++.+.+.++..+|++.       +.+++.+++++++++++.+.|+ ++
T Consensus       227 -~~~~~~~~------------~~~~~~~--~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~-~~  283 (354)
T 3ly1_A          227 -AHPTVIAL------------MGRYVAG--EKINFSGVDAALASMNDS-------AFITYSKKSNDVSRQILLKALE-DL  283 (354)
T ss_dssp             -CCHHHHHH------------HGGGTTC--SCCCHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             -cCHHHHHH------------HHHhcCC--CCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHH-HC
Confidence             68887777            6665554  467788888888888864       2367888999999999999999 77


Q ss_pred             CCCCCcccccCCcceEEecCC--CHHHHHHHHHcccEEEeCC------C--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          400 KSGKDWSFILRQIGMFSFTGL--NKAQSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       400 g~~~~~~~~~~~~g~f~~~~l--~~~~~~~ll~~~gI~v~~g------g--Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                      +    +.+.++ .|.|+|+.+  +.+.+.+.+.++||.+. |      +  ||+++  +++++++++++|++++++
T Consensus       284 ~----~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          284 K----LPYLPS-EGNFVFHQLVVPLKDYQTHMADAGVLIG-RAFPPADNWCRISLG--TPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             T----CCBCCC-CSSEEEEECSSCHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred             C----CeECCC-CceEEEEECCCCHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence            6    455555 455788766  34444444445799988 3      2  99987  578999999999999875

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=100.00  E-value=3.8e-39  Score=320.06  Aligned_cols=339  Identities=12%  Similarity=0.065  Sum_probs=266.0

Q ss_pred             CCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCC
Q 012238           65 APPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADN  144 (467)
Q Consensus        65 ~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~  144 (467)
                      .+...+..+...+.   .+++|+|+.|++    .+++ ++.+++++.+.+..  ...|.+..+ .++|+++++++..   
T Consensus        15 ~~~~~~~~~~~~~~---~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~--~~~y~~~~~-~~lr~~la~~~~~---   80 (365)
T 3get_A           15 EPGKDIEVIAKEYG---VKEVIKLASNEN----PFGT-PPKAIECLRQNANK--AHLYPDDSM-IELKSTLAQKYKV---   80 (365)
T ss_dssp             CCCCCHHHHHHHTT---CSCCEECSSCCC----TTCS-CHHHHHHHHHHGGG--TTSCCCTTC-HHHHHHHHHHHTC---
T ss_pred             CCCCCHHHHHHhcC---CCceEEecCCCC----CCCC-CHHHHHHHHHHHHh--hccCCCCCh-HHHHHHHHHHhCC---
Confidence            34444444444433   258999999987    4543 78999999988763  367866666 8999999999742   


Q ss_pred             cccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHH
Q 012238          145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK  224 (467)
Q Consensus       145 ~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~  224 (467)
                         ++++|++  |+|+++++.++  +...+.+||+|+++.|+|..+...++..|++++.+++ +++++ +|++.+++.++
T Consensus        81 ---~~~~v~~--~~g~~~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l~  151 (365)
T 3get_A           81 ---QNENIII--GAGSDQVIEFA--IHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETHK  151 (365)
T ss_dssp             ---CGGGEEE--ESSHHHHHHHH--HHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHTT
T ss_pred             ---CcceEEE--CCCHHHHHHHH--HHHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHhC
Confidence               3789999  99999999998  4445679999999999999999999999999999998 34567 99999999997


Q ss_pred             cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCC--CCCCCChhHHHHHHhcCCeEEEEecC
Q 012238          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS--GSLDNDASSVRLFATRGMELLVAQSY  302 (467)
Q Consensus       225 ~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~S~  302 (467)
                         ++++++++++||||||.+++.+++.+|+++| ++|+++|+||+|.++.+  .+.  ...+.....+..+++++++|+
T Consensus       152 ---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~  225 (365)
T 3get_A          152 ---DEIKLIFLCLPNNPLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSK--KHLEPCELIKEFDNVLYLGTF  225 (365)
T ss_dssp             ---TTEEEEEEESSCTTTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGG--GCCCHHHHHHHCTTEEEEEES
T ss_pred             ---CCCCEEEEcCCCCCCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCc--ccccHhHHhccCCCEEEEeec
Confidence               6788999999999999999999999999988 57999999999998773  211  111222333556789999999


Q ss_pred             ccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 012238          303 SKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAG  382 (467)
Q Consensus       303 SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~  382 (467)
                      ||.+|++|+|+||++   .++++++.            +......  .+++.+.+.++..+|++.       +++++.++
T Consensus       226 sK~~~~~G~r~G~~~---~~~~~~~~------------~~~~~~~--~~~~~~~~~~~~~~l~~~-------~~~~~~~~  281 (365)
T 3get_A          226 SKLYGLGGLRIGYGI---ANANIISA------------FYKLRAP--FNVSNLALKAAVAAMDDD-------EFTEKTLE  281 (365)
T ss_dssp             SSTTSCTTTCCEEEE---ECHHHHHH------------HHHHSCT--TCSCHHHHHHHHHHHTCH-------HHHHHHHH
T ss_pred             chHhcCcchheEEEE---cCHHHHHH------------HHHhcCC--CCcCHHHHHHHHHHhCCH-------HHHHHHHH
Confidence            999999999999996   58888777            5555443  357888888888888864       33678889


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC---CHHHHHHHHHcccEEEeCCC-------eEEeccCChhhH
Q 012238          383 RIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG-------RISLAGLSLAKC  452 (467)
Q Consensus       383 ~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg-------Ris~~~~~~~~i  452 (467)
                      +++++++.+.+.|+ ++|    +.+.++.+ .|+|+.+   +.+.+.+.+.++||.+.+|+       ||+++  +++++
T Consensus       282 ~~~~~~~~l~~~l~-~~g----~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~--~~~~i  353 (365)
T 3get_A          282 NNFSQMELYKEFAK-KHN----IKIIDSYT-NFITYFFDEKNSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG--TSYEN  353 (365)
T ss_dssp             HHHHHHHHHHHHHH-HTT----CEECCCSS-SEEEEECSSSCHHHHHHHHHTTTEECEECGGGTCSEEEEECC--CHHHH
T ss_pred             HHHHHHHHHHHHHH-hCC----CEECCCCC-eEEEEECCCCCHHHHHHHHHHCCEEEEECccCCCCEEEEEcC--CHHHH
Confidence            99999999999999 776    46665655 4678755   44444444445699999872       99988  67999


Q ss_pred             HHHHHHHHHHHH
Q 012238          453 EYLADAIIDSYH  464 (467)
Q Consensus       453 ~~~~~~l~~~l~  464 (467)
                      ++++++|+++++
T Consensus       354 ~~l~~~l~~~l~  365 (365)
T 3get_A          354 EKFFTEFDKILR  365 (365)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999998763

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=100.00  E-value=7.6e-40  Score=331.76  Aligned_cols=348  Identities=15%  Similarity=0.086  Sum_probs=262.3

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHH--HHHhcC-CCCcC-CCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAEN--LMLERG-ENKEY-LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~--~~~~~~-~~~~Y-~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      ...|||+.|.| +...+|. ++.+.+++.  +.+..+ ....| .+..|.++||+++++++.      +++++|++  |+
T Consensus        25 ~~~i~l~~g~p-~~~~~~~-~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~------~~~~~i~~--t~   94 (423)
T 3ez1_A           25 GLNLNMQRGQP-ADADFDL-SNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLD------VKAENVLV--WN   94 (423)
T ss_dssp             TCCEESCCCCC-CHHHHHT-TGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTT------SCGGGEEE--CS
T ss_pred             CceEecCCCCC-ChHhCCC-cHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhC------CChhhEEE--eC
Confidence            46899999998 1111333 556777764  443321 23679 888999999999999973      23789999  99


Q ss_pred             CchhHHH--HHHHHHHHhC--C---------CCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc
Q 012238          159 SGTGSLR--LAAALIERYF--P---------GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA  225 (467)
Q Consensus       159 ggt~al~--l~~~~l~~~~--~---------gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~  225 (467)
                      |++++++  ++  +...+.  |         ||+|+++.|+|..|...++..|++++.+|++++   ++|++.+++.+++
T Consensus        95 G~~~al~~~~~--~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~  169 (423)
T 3ez1_A           95 NSSLELQGLVL--TFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD---GPDVDAVERLAGT  169 (423)
T ss_dssp             SCHHHHHHHHH--HHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHHS
T ss_pred             CcHHHHHHHHH--HHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCC---CCCHHHHHHHHhh
Confidence            9999997  65  334455  7         599999999999999999999999999999642   5999999999963


Q ss_pred             CCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHH-HhcCCeeEEeccCCCCCCCC-CCCChhHHHHH---HhcCCeEEEE
Q 012238          226 APGGSFILL-HGCAHNPTGIDPTPEQWEKIADVI-QEKNHIPFFDVAYQGFASGS-LDNDASSVRLF---ATRGMELLVA  299 (467)
Q Consensus       226 ~~~~~~~i~-i~~p~NPTG~~~~~~~l~~l~~~~-~~~~~~li~Deay~~~~~~~-~~~~~~~~~~~---~~~~~~~i~~  299 (467)
                      . +++++++ +++||||||.+++.+++++|+++| ++||++||+||+|..+.+.. ......++..+   .+..++++++
T Consensus       170 ~-~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  248 (423)
T 3ez1_A          170 D-PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF  248 (423)
T ss_dssp             C-TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEE
T ss_pred             C-CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEE
Confidence            2 4566664 568999999999999999999999 99999999999999654432 10111112122   2345789999


Q ss_pred             ecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCC--hhhHHHHHHHH
Q 012238          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGN--PALFDEWKAEM  377 (467)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~--~~~~~~~~~~l  377 (467)
                      +||||. +++|+|+||++   .++++++.            +.........+++.+.|.++..+|.+  ..+    .+++
T Consensus       249 ~S~sK~-~~~G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~----~~~~  308 (423)
T 3ez1_A          249 ASTSKI-TFAGAGLGFVA---SSEDNIRW------------LSKYLGAQSIGPNKVEQARHVKFLTEYPGGL----EGLM  308 (423)
T ss_dssp             EESTTT-SCSSSSCEEEE---ECHHHHHH------------HHHHHHHSCSCCCHHHHHHHHHHHHHSTTHH----HHHH
T ss_pred             eCchhh-ccCCcceEEEE---eCHHHHHH------------HHHHHhhhccCCCHHHHHHHHHHHHhccchH----HHHH
Confidence            999999 57999999996   77888777            55555555667888999998888875  333    4556


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCC-CcccccCCcceEEecCC---CHHHHHHHHHcccEEEeC-C-----------C-
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKDKSGK-DWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTK-D-----------G-  440 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~g~~~-~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~-g-----------g-  440 (467)
                      ++.++.++++++.+.+.|.+.++--+ .+.+..|.+|+|+|+.+   +.+.+.++++++||.+.+ |           + 
T Consensus       309 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~  388 (423)
T 3ez1_A          309 RDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEPVADRVVKLAEAAGVSLTPAGATYPAGQDPHNRN  388 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSSCHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCCcHHHHHHHHHHCCcEEecCcccccCCCCCCCCe
Confidence            77778888888877777762222101 14666788999999865   456666667778999998 2           1 


Q ss_pred             -eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          441 -RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 -Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                       ||+++..+++++++++++|.++++++
T Consensus       389 iRis~~~~~~~~i~~~~~~l~~~l~~~  415 (423)
T 3ez1_A          389 LRLAPTRPPVEEVRTAMQVVAACIRLA  415 (423)
T ss_dssp             EEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence             99998668899999999999998753

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=100.00  E-value=5.1e-39  Score=322.96  Aligned_cols=341  Identities=17%  Similarity=0.177  Sum_probs=263.9

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      ++++|||+.|.+ +..+.  +++.+.+++.+.+...  ....|.+..|..++|+++++++.      +++++|++  |+|
T Consensus        31 ~~~~i~l~~g~~-~~~~~--~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g------~~~~~v~~--~~g   99 (397)
T 2zyj_A           31 RPGILSFAGGLP-APELF--PKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIG------VRPEEVLI--TTG   99 (397)
T ss_dssp             STTCEEESSCCC-CGGGC--CHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHT------SCGGGEEE--ESH
T ss_pred             CCCceecCCCCC-CchhC--CHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhC------CChhhEEE--ecc
Confidence            457999999986 22222  3678888888776431  12578777899999999999983      33789999  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEE-EeCCC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL-LHGCA  238 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i-~i~~p  238 (467)
                      +++++.++  +...+.+||+|+++.|+|..+...++..|++++.+|.++ +  ++|++.+++.+++  .+++++ ++++|
T Consensus       100 ~~~al~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~--~~d~~~l~~~l~~--~~~~~v~~~~~~  172 (397)
T 2zyj_A          100 SQQALDLV--GKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGE-E--GPDLDALEEVLKR--ERPRFLYLIPSF  172 (397)
T ss_dssp             HHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-T--EECHHHHHHHHHH--CCCSCEEECCBS
T ss_pred             HHHHHHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCC-C--CCCHHHHHHHHhh--cCCeEEEECCCC
Confidence            99999997  333467999999999999999999999999999999853 2  4999999999975  244454 67999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc--CCeEEEEecCccCcccCCCccceE
Q 012238          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR--GMELLVAQSYSKNLGLYAERIGAM  316 (467)
Q Consensus       239 ~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~~G~RiG~~  316 (467)
                      |||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+...  .++++++.|+||.++ +|+|+||+
T Consensus       173 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~  249 (397)
T 2zyj_A          173 QNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEA--RLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFA  249 (397)
T ss_dssp             CTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSC--CCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEE
T ss_pred             cCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCC--CCCchhhhCcccCCCeEEEEeccccccc-ccceeEEE
Confidence            99999999999999999999999999999999999887431  11223233211  167899999999999 99999999


Q ss_pred             EEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          317 NVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       317 ~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      +   .++++++.            +.........+.+.+.|.++..+|++..    | +++++.+++++++++.+.+.|+
T Consensus       250 ~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~~----~-~~~~~~~~~~~~~~~~l~~~L~  309 (397)
T 2zyj_A          250 V---AHPEALQK------------LVQAKQGADLHTPMLNQMLVHELLKEGF----S-ERLERVRRVYREKAQAMLHALD  309 (397)
T ss_dssp             E---CCHHHHHH------------HHHHHHHHHSSCCHHHHHHHHHHHTTTH----H-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             e---cCHHHHHH------------HHHHHHhhcCCCCHHHHHHHHHHHHhCC----H-HHHHHHHHHHHHHHHHHHHHHH
Confidence            6   67887777            4433333334567888888888888652    2 4477888999999999999998


Q ss_pred             hccCCCCCcccccCCcceEEecCC----CH-HHHHHHHHcccEEEeCC----------C--eEEeccCChhhHHHHHHHH
Q 012238          397 AKDKSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKD----------G--RISLAGLSLAKCEYLADAI  459 (467)
Q Consensus       397 ~~~g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~g----------g--Ris~~~~~~~~i~~~~~~l  459 (467)
                       +. +|.++.+..+.+|+|+|+.+    +. ++.+.++++ ||.+.+|          +  ||+++..+++++++++++|
T Consensus       310 -~~-~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l  386 (397)
T 2zyj_A          310 -RE-VPKEVRYTRPKGGMFVWMELPKGLSAEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRL  386 (397)
T ss_dssp             -HH-SCTTSEECCCSBSSEEEEECSTTCCHHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHH
T ss_pred             -HH-CCCCeEEccCCccEEEEEEcCCCCCHHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Confidence             64 11115666778899998754    33 446666665 9999874          2  9999886789999999999


Q ss_pred             HHHHHhc
Q 012238          460 IDSYHNV  466 (467)
Q Consensus       460 ~~~l~~~  466 (467)
                      .++++++
T Consensus       387 ~~~l~~~  393 (397)
T 2zyj_A          387 GRALKGL  393 (397)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988753

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=100.00  E-value=1.5e-39  Score=329.54  Aligned_cols=342  Identities=15%  Similarity=0.076  Sum_probs=271.5

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.|||++|.+    .++. ++.+.+++.+.+.... ..|.+.  ..++++++++++....+..+++++|++  |+|++
T Consensus        60 g~~~i~~~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~--~~~l~~~l~~~l~~~~g~~~~~~~v~~--~~g~~  129 (421)
T 3l8a_A           60 NPELLQMWVADM----DFLP-VPEIKEAIINYGREHI-FGYNYF--NDDLYQAVIDWERKEHDYAVVKEDILF--IDGVV  129 (421)
T ss_dssp             CTTCEECCSSCC----CSCC-CHHHHHHHHHHHHHCC-SSCBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEE--ESCHH
T ss_pred             CCCeeecccCCC----CCCC-CHHHHHHHHHHHhcCC-cCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEE--cCCHH
Confidence            468999999976    5554 8899999998886543 667554  378999999998776676677889999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeee-cCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      +|++++  +.....+||+|+++.|+|..+...++..|.+++.+|+. ++.++.+|++.+++.+++  ++++++++++|||
T Consensus       130 ea~~~a--~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~--~~~~~vil~~p~n  205 (421)
T 3l8a_A          130 PAISIA--LQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID--NNVKIYLLCSPHN  205 (421)
T ss_dssp             HHHHHH--HHHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH--TTEEEEEEESSBT
T ss_pred             HHHHHH--HHHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc--cCCeEEEECCCCC
Confidence            999998  33446799999999999999999999999999999985 345567899999999974  4788899999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      |||.+++.+++++|+++|++||+++|+||+|.++.+++..  ..++..+. +..++++++.|+||.++++|+|+||++  
T Consensus       206 ptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~--  281 (421)
T 3l8a_A          206 PGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNT--HHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAI--  281 (421)
T ss_dssp             TTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEE--
T ss_pred             CCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC--CccHHHcCchhcCcEEEEEeChhhccCchhheEeEE--
Confidence            9999999999999999999999999999999999875321  11111111 123578999999999999999999996  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHhhc-cCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKRLA-RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK  398 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~  398 (467)
                      +.++++++.            +.... ...+.+++.+++.++..++...      ++.+++.+++++++++++.+.|+ +
T Consensus       282 ~~~~~l~~~------------~~~~~~~~~~~~~n~~~~~a~~aal~~~------~~~~~~~~~~~~~~~~~l~~~L~-~  342 (421)
T 3l8a_A          282 IQNESLRRK------------FQYRQLANNQHEVPTVGMIATQAAFQYG------KPWLEELKTVIEGNIKLVIKELE-A  342 (421)
T ss_dssp             CCSHHHHHH------------HHHHHHHTTCSCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             cCCHHHHHH------------HHHHHHhcccCCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHH-h
Confidence            344887776            44333 2224467777887877776532      23367888999999999999998 7


Q ss_pred             cCCCCCcccccCCcceEEecCC-----C-HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHH
Q 012238          399 DKSGKDWSFILRQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       399 ~g~~~~~~~~~~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                      +.  + +.+..++++++.|+.+     + .++.+.+++++||.+.+|        +  ||+++. +++++++++++|+++
T Consensus       343 ~~--~-i~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~  418 (421)
T 3l8a_A          343 KT--K-IKVMEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVAT-PKNTVQEALSRIISV  418 (421)
T ss_dssp             HC--S-CEEECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHH
T ss_pred             CC--C-ceEeCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHH
Confidence            52  1 6788899999988754     2 356777777789999885        2  999996 899999999999998


Q ss_pred             HH
Q 012238          463 YH  464 (467)
Q Consensus       463 l~  464 (467)
                      ++
T Consensus       419 l~  420 (421)
T 3l8a_A          419 FG  420 (421)
T ss_dssp             C-
T ss_pred             Hh
Confidence            75

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=100.00  E-value=6.7e-40  Score=329.83  Aligned_cols=335  Identities=16%  Similarity=0.150  Sum_probs=249.5

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc----CCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER----GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      .++++|+|+.|.+    ..+. ++.+.+++.+.+..    .....|.+..|.+++|+++++++.  .|. +++++|++  
T Consensus        31 ~~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g~-~~~~~v~~--  100 (400)
T 3asa_A           31 PQHTVINLSIGDT----TQPL-NASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFY--RGF-VDAKEIFI--  100 (400)
T ss_dssp             TTSCCEECSSCCC----CCCC-CHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTS--TTS-SCGGGEEE--
T ss_pred             CCCceEeccCCCC----CCCC-CHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHH--cCC-CCHHHEEE--
Confidence            4568999999987    4443 77888888777642    123678888899999999999964  343 55889999  


Q ss_pred             cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCC-eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~-~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i  235 (467)
                      |+|+++++.++   +..+.+||+|+++.|+|..+...++..|++ ++.+|++++.++..|++.+        ++++++++
T Consensus       101 ~~G~~~al~~~---~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~--------~~~~~v~l  169 (400)
T 3asa_A          101 SDGAKVDLFRL---LSFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPED--------THIDILCL  169 (400)
T ss_dssp             ESCHHHHHHHH---HHHHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCTT--------CCCSEEEE
T ss_pred             ccChHHHHHHH---HHHcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhhc--------cCccEEEE
Confidence            99999999986   345679999999999999999999999999 9999985433344444321        34567777


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccce
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  315 (467)
                      ++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ....+..+....++++++.||||.+|++|+|+||
T Consensus       170 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~  247 (400)
T 3asa_A          170 CSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPS--LPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGW  247 (400)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTT--SCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEE
T ss_pred             eCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCC--CCCchhhCCCCCCceEEEecchhhcCCcchheeE
Confidence            89999999999999999999999999999999999998876531  1111111111134689999999999999999999


Q ss_pred             EEEecCCHHH-------HhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238          316 MNVVCSSSDL-------AARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  388 (467)
Q Consensus       316 ~~~v~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r  388 (467)
                      ++   .++++       ++.        +..   ......+.+++.+.|.++..+|++.        ++++.++++++++
T Consensus       248 ~~---~~~~~~~~~~~~~~~--------~~~---~~~~~~~~~~~~~~~~a~~~~l~~~--------~~~~~~~~~~~~~  305 (400)
T 3asa_A          248 TV---IPQELTYADGHFVIQ--------DWE---RFLSTTFNGASIPAQEAGVAGLSIL--------PQLEAIHYYRENS  305 (400)
T ss_dssp             EE---CCTTCBCTTSCBHHH--------HHH---HHHHHHCCCCCHHHHHHHHHHHHHT--------TTCHHHHHHHHHH
T ss_pred             Ee---eChhhccchhhhHHH--------HHH---HHhccCccCCChHHHHHHHHHhCcH--------HHHHHHHHHHHHH
Confidence            96   56665       444        211   1111123457788888887777542        2557788899999


Q ss_pred             HHHHHHhhhccCCCCCcccccCCcceEEecC-CC-----HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhH
Q 012238          389 QKLFDSLSAKDKSGKDWSFILRQIGMFSFTG-LN-----KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKC  452 (467)
Q Consensus       389 ~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~-l~-----~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i  452 (467)
                      +++.+.|+ ++|    +++..+.+|+|+|+. +.     .++++++++++||.+.+|        +  ||++.. +++++
T Consensus       306 ~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~i  379 (400)
T 3asa_A          306 DLLRKALL-ATG----FEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLG-KREDI  379 (400)
T ss_dssp             HHHHHHHH-HTT----CEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCS-CHHHH
T ss_pred             HHHHHHHH-HCC----CeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeC-CHHHH
Confidence            99999999 776    567777778888876 42     256777887779999876        2  999655 88999


Q ss_pred             HHHHHHHHHHHHhc
Q 012238          453 EYLADAIIDSYHNV  466 (467)
Q Consensus       453 ~~~~~~l~~~l~~~  466 (467)
                      ++++++|++++++.
T Consensus       380 ~~~l~~l~~~~~~~  393 (400)
T 3asa_A          380 LAACERLQMAPALQ  393 (400)
T ss_dssp             HHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998765

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=100.00  E-value=1.1e-39  Score=329.80  Aligned_cols=359  Identities=16%  Similarity=0.104  Sum_probs=257.2

Q ss_pred             CCcccchHHHhh-cCCCCCcEEecCcccCCCCCC-CCchHHHHHHHHHHHhcCC----CCcCCCCcchHHHHHHHHHHHh
Q 012238           67 PDPILGVSEAFK-ADTDEKKLNLGVGAYRTEELQ-PYVLDVVKKAENLMLERGE----NKEYLPIEGLAAFNKVTAELLF  140 (467)
Q Consensus        67 ~~~i~~~~~~~~-~~~~~~~i~l~~G~~~d~~~~-p~~~~~v~~a~~~~~~~~~----~~~Y~~~~G~~~lr~aia~~l~  140 (467)
                      +..+.....++. ...++++|||+.|.|    .. |.+.+.+.+++.+.+....    ...|.+..|.++||+++|+++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~i~l~~g~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~   89 (417)
T 3g7q_A           14 HSGITRLMEDLNDGLRTPGAIMLGGGNP----AHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLR   89 (417)
T ss_dssp             --CHHHHHHHHHC-----CCEECSCCCC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhhccCCCceEecCcCC----CCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHH
Confidence            444555555443 334578999999988    32 3234678888877764321    1479999999999999999997


Q ss_pred             CCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCC-----EEEEc-CCCCcchHHHHhhC----CCCeEEeeeecC-
Q 012238          141 GADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA-----KVLIS-SPTWGNHKNIFNDA----RVPWSEYRYYDP-  209 (467)
Q Consensus       141 ~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd-----~Vlv~-~P~y~~~~~~~~~~----G~~~~~v~~~~~-  209 (467)
                      ..+|..+++++|++  |+|++++++++  +...+.+||     +|+++ +|+|..|...+...    +..+...++..+ 
T Consensus        90 ~~~g~~~~~~~i~~--t~G~t~al~~~--~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (417)
T 3g7q_A           90 ETLGWDIEPQNIAL--TNGSQSAFFYL--FNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQ  165 (417)
T ss_dssp             HHHCCCCCGGGEEE--ESCHHHHHHHH--HHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGE
T ss_pred             HHhCCCCCcccEEE--eCCcHHHHHHH--HHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcc
Confidence            76677778999999  99999999998  344466887     89997 99999988765322    223333333211 


Q ss_pred             CCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012238          210 KTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (467)
Q Consensus       210 ~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~  289 (467)
                      .++.+|++.++  +.   ++++++++++||||||.+++.+++++|+++|++||+++|+||+|..+..+....+..     
T Consensus       166 ~~~~~d~~~l~--~~---~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~-----  235 (417)
T 3g7q_A          166 FKYHVDFEHLH--IG---EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEAR-----  235 (417)
T ss_dssp             EEEECCGGGCC--CC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC-----
T ss_pred             cccccCHHHhc--cc---cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccc-----
Confidence            24568999987  43   678899999999999999999999999999999999999999998643221000000     


Q ss_pred             HhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhh
Q 012238          290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL  369 (467)
Q Consensus       290 ~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~  369 (467)
                      ....++++++.|||| ++++|+|+||++   .++++++.            +.........+++.+.|.++..++++..+
T Consensus       236 ~~~~~~~i~~~s~sK-~~~~G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  299 (417)
T 3g7q_A          236 PLWNPNIILCMSLSK-LGLPGSRCGIII---ANDKTITA------------IANMNGIISLAPGGMGPAMMCEMIKRNDL  299 (417)
T ss_dssp             CCCCTTEEEEEESGG-GTCTTSCCEEEE---CCHHHHHH------------HHHHHHHHCCCCCSHHHHHHHHHHHTTCH
T ss_pred             cCCCCCEEEEEechh-ccCCCcceEEEE---eCHHHHHH------------HHHhhcceeeCCCcHHHHHHHHHHcCcch
Confidence            022467999999999 688999999995   78888887            55554444556778888898888887654


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHhhhc-cCCCCCcccccCCcceEEecCC-----CHHHHHHHHHcccEEEeCC---
Q 012238          370 FDEWKAEMEM-MAGRIKNVRQKLFDSLSAK-DKSGKDWSFILRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD---  439 (467)
Q Consensus       370 ~~~~~~~l~~-~~~~~~~~r~~l~~~l~~~-~g~~~~~~~~~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g---  439 (467)
                          .+++.+ ++++++++++.+.+.|+ + ++- ..+.+..+++|+|+|+.+     +.+.+.+.+.++||.+.+|   
T Consensus       300 ----~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f  373 (417)
T 3g7q_A          300 ----LRLSETVIKPFYYQRVQQTIAIIR-RYLSE-ERCLIHKPEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYF  373 (417)
T ss_dssp             ----HHHHHHTHHHHHHHHHHHHHHHHH-HHCCT-TTCEEECCCBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGG
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHH-Hhccc-CCceeeCCCcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhh
Confidence                333444 77888888888888887 5 321 025677788999999743     4444444445679999874   


Q ss_pred             ------------C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          440 ------------G--RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 ------------g--Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                                  +  |||++. +++++++++++|.++++++
T Consensus       374 ~~~~~~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~l~~~  413 (417)
T 3g7q_A          374 FPGLDKPWPHTHQCMRMNYVP-EPDKIEAGVKILAEEIERA  413 (417)
T ss_dssp             CTTBSSCCGGGGGEEEEESCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccccccCCCeEEEEecC-CHHHHHHHHHHHHHHHHHH
Confidence                        2  999998 9999999999999998764

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=5.4e-39  Score=321.93  Aligned_cols=341  Identities=15%  Similarity=0.077  Sum_probs=262.7

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHH-HHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAA-FNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~-lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +++|||+.|.+    ..+ +++.+.+++.+.+... ...|.+.  .++ +|+++++++...+|..+++++|++  |+|++
T Consensus        28 ~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~-~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~--t~g~~   97 (390)
T 1d2f_A           28 ADLLPFTISDM----DFA-TAPCIIEALNQRLMHG-VFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVY--GPSVI   97 (390)
T ss_dssp             --CEECCSSSC----SSC-CCHHHHHHHHHHHTTC-CCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEE--ESCHH
T ss_pred             CCeeEeeecCC----CCC-CCHHHHHHHHHHHhCC-CCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEE--cCCHH
Confidence            47899999987    444 3788999999887543 3678654  778 999999998766666667889999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCC-CCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      +++.++  +...+.+||+|+++.|+|..+...++..|++++.+|++++. ++.+|++.+++.+++  .+++++++++|||
T Consensus        98 ~al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~l~~p~n  173 (390)
T 1d2f_A           98 YMVSEL--IRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK--PECKIMLLCSPQN  173 (390)
T ss_dssp             HHHHHH--HHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS--TTEEEEEEESSCT
T ss_pred             HHHHHH--HHHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc--CCCeEEEEeCCCC
Confidence            999997  33345689999999999999999999999999999986432 456999999999973  3678888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      |||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+ ......+ +.|+||.+|++|+|+||++  +
T Consensus       174 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~-~~~~~d~-~~s~sK~~~~~G~r~G~~~--~  247 (390)
T 1d2f_A          174 PTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ--PHIPWSNV-ARGDWAL-LTSGSKSFNIPALTGAYGI--I  247 (390)
T ss_dssp             TTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS--CCCCGGGT-CCSSEEE-EECSHHHHTCGGGCCEEEE--E
T ss_pred             CCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcCHHHc-chhhHhh-ccCccHhhcccChhheEEE--E
Confidence            999999999999999999999999999999999887531  11111111 1111123 9999999999999999996  4


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhcc--CccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLAR--PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK  398 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~  398 (467)
                      .++++++.            +.....  ..+.+++.+.+.++..+|.+.      .+.+++.+++++++++.+.+.|+ +
T Consensus       248 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~  308 (390)
T 1d2f_A          248 ENSSSRDA------------YLSALKGRDGLSSPSVLALTAHIAAYQQG------APWLDALRIYLKDNLTYIADKMN-A  308 (390)
T ss_dssp             CSHHHHHH------------HHHHHHTTSCCCSCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             CCHHHHHH------------HHHHHhhhcccCCCCHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHHHHHH-h
Confidence            56777776            444333  223367777777777666531      23367888999999999999998 6


Q ss_pred             -cCCCCCcccccCCcceEEecCC-----CHH-HHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHH
Q 012238          399 -DKSGKDWSFILRQIGMFSFTGL-----NKA-QSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIID  461 (467)
Q Consensus       399 -~g~~~~~~~~~~~~g~f~~~~l-----~~~-~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~  461 (467)
                       ++  + +.+..+.+++++|+.+     +.+ +.+.+++++||.+.+|        +  ||+++. +++++++++++|.+
T Consensus       309 ~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~  384 (390)
T 1d2f_A          309 AFP--E-LNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLIN  384 (390)
T ss_dssp             HCS--S-CCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHH
T ss_pred             hCC--C-CEEecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence             42  1 5677888898888643     443 4566665679999875        2  999998 78999999999999


Q ss_pred             HHHhc
Q 012238          462 SYHNV  466 (467)
Q Consensus       462 ~l~~~  466 (467)
                      +++++
T Consensus       385 ~l~~~  389 (390)
T 1d2f_A          385 AIRAV  389 (390)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            98865

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=100.00  E-value=1.8e-38  Score=314.87  Aligned_cols=321  Identities=14%  Similarity=0.111  Sum_probs=254.4

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      .+++|||+.|++    ..++ ++.+.+++.+.+..  ...| |..+..++|+++++++..      ++++|++  |+|++
T Consensus        31 ~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~--~~~y-~~~~~~~lr~~la~~~~~------~~~~v~~--~~g~t   94 (363)
T 3ffh_A           31 LTKITKLSSNEN----PLGT-SKKVAAIQANSSVE--TEIY-PDGWASSLRKEVADFYQL------EEEELIF--TAGVD   94 (363)
T ss_dssp             CSCCEECSSCSC----TTCC-CHHHHHHHHTCBSC--CCBC-----CHHHHHHHHHHHTC------CGGGEEE--ESSHH
T ss_pred             CCceEEccCCCC----CCCC-CHHHHHHHHHHHHH--hhcC-CCcchHHHHHHHHHHhCC------ChhhEEE--eCCHH
Confidence            358999999977    4554 78899998886543  3556 667899999999999753      3789999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      ++++++  +...+.+||+|+++.|+|..+...++..|++++.++.+  .++.+|++.+++.++   ++++++++++||||
T Consensus        95 ~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~p~np  167 (363)
T 3ffh_A           95 ELIELL--TRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLL--QDGEHDLEGMLNAID---EKTTIVWICNPNNP  167 (363)
T ss_dssp             HHHHHH--HHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECC--TTSCCCHHHHHHHCC---TTEEEEEEESSCTT
T ss_pred             HHHHHH--HHHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC--CCCCcCHHHHHHhcc---cCCCEEEEeCCCCC
Confidence            999998  34446799999999999999999999999999999984  367899999999987   57889999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++.+|++.|++ |+++|+||+|.++.++.. .   +........++++++.||||.+|++|+|+||++   .
T Consensus       168 tG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~~~~-~---~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~---~  239 (363)
T 3ffh_A          168 TGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVTPQP-E---KHEKLVRTYKNLIITRTFSKIYGLASARVGYGI---A  239 (363)
T ss_dssp             TCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCSSCC-C---CCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEE---E
T ss_pred             cCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcCccc-c---CHHHHhhcCCCEEEEeechhhhcCchhceeeee---c
Confidence            9999999999999888887 999999999998876211 1   111223446789999999999999999999996   5


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DK  400 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~-~g  400 (467)
                      ++++++.            +.....  ..+++.+.+.++..+|++.       +.+++.+++++++++.+.+.|+ + .|
T Consensus       240 ~~~~~~~------------l~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~-~~~g  297 (363)
T 3ffh_A          240 DKEIIRQ------------LNIVRP--PFNTTSIGQKLAIEAIKDQ-------AFIGECRTSNANGIKQYEAFAK-RFEK  297 (363)
T ss_dssp             CHHHHHH------------HHHTCC--SCCCBHHHHHHHHHHHHCH-------HHHHHHHHHHHHHHHHHHHHHH-HCTT
T ss_pred             CHHHHHH------------HHHhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHh-hCCC
Confidence            7888777            665544  3467888888888888754       3367888999999999999998 7 55


Q ss_pred             CCCCcccccCCcceEEecCC--CHHH-HHHHHHcccEEEeCCC--------eEEeccCChhhHHHHHHHHHHHH
Q 012238          401 SGKDWSFILRQIGMFSFTGL--NKAQ-SDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       401 ~~~~~~~~~~~~g~f~~~~l--~~~~-~~~ll~~~gI~v~~gg--------Ris~~~~~~~~i~~~~~~l~~~l  463 (467)
                          +.+.++. |.|+|+.+  +.+. .+.+. ++||.+.+|.        ||+++  +++++++++++|++++
T Consensus       298 ----~~~~~~~-~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l  363 (363)
T 3ffh_A          298 ----VKLYPAN-GNFVLIDLGIEAGTIFSYLE-KNGYITRSGAALGFPTAVRITIG--KEEDNSAVIALLEKLL  363 (363)
T ss_dssp             ----CEECCCC-SSEEEEECSSCHHHHHHHHH-HTTEECEETTTTTCTTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred             ----ceECCCC-CeEEEEECCCCHHHHHHHHH-HCCeEEEeCccCCCCCeEEEECC--CHHHHHHHHHHHHHhC
Confidence                5665555 45778765  3444 55555 5699999862        99987  6799999999998763

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=100.00  E-value=1.5e-38  Score=316.06  Aligned_cols=324  Identities=18%  Similarity=0.162  Sum_probs=259.7

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      .+++|||+.|.+    ..++ ++.+.+++.+.+.......|.+ .+..++|+++++++...     ++++|++  |+|++
T Consensus        29 ~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~y~~-~~~~~l~~~la~~~g~~-----~~~~i~~--~~g~t   95 (367)
T 3euc_A           29 SHGLVKLDAMEN----PYRL-PPALRSELAARLGEVALNRYPV-PSSEALRAKLKEVMQVP-----AGMEVLL--GNGSD   95 (367)
T ss_dssp             CTTCEECCSSCC----CCCC-CHHHHHHHHHHHHHHHTTCSCC-CCHHHHHHHHHHHHTCC-----TTCEEEE--EEHHH
T ss_pred             CCCeeEccCCCC----CCCC-CHHHHHHHHHHhhhhhhhcCCC-CcHHHHHHHHHHHhCCC-----CcceEEE--cCCHH
Confidence            357899999986    5554 7889999988775322367844 68999999999997431     3679999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      ++++++  +...+.+||+|+++.|+|..+...++..|++++.++++  .++.+|++.+++.+++  .+++++++++||||
T Consensus        96 ~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~--~~~~~v~~~~~~np  169 (367)
T 3euc_A           96 EIISML--ALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLR--ADFTLDRGAMLAAMAE--HQPAIVYLAYPNNP  169 (367)
T ss_dssp             HHHHHH--HHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECC--TTSCCCHHHHHHHHHH--HCCSEEEEESSCTT
T ss_pred             HHHHHH--HHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCC--CCCCCCHHHHHHHhhc--cCCCEEEEcCCCCC
Confidence            999998  34446799999999999999999999999999999984  3678999999999984  25678888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhc--CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          242 TGIDPTPEQWEKIADVIQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~--~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||.+++.+++++|+++|++|  |+++|+||+|.++....   ...    .....++++++.||||. +++|+|+||++  
T Consensus       170 tG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~---~~~----~~~~~~~~i~~~s~sK~-~~~G~r~G~~~--  239 (367)
T 3euc_A          170 TGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES---WMS----RLTDFGNLLVMRTVSKL-GLAGIRLGYVA--  239 (367)
T ss_dssp             TCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC---SGG----GGGTCTTEEEEEECCCT-TSCSCCEEEEE--
T ss_pred             CCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc---hHH----HHhhCCCEEEEecchhh-cccccCceeee--
Confidence            99999999999999999999  99999999999887432   111    22445688999999999 89999999996  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                       .++++++.            +......  .+++.+.+.++..+|++.       +.+++.+++++++++.+.+.|+ ++
T Consensus       240 -~~~~~~~~------------~~~~~~~--~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~-~~  296 (367)
T 3euc_A          240 -GDPQWLEQ------------LDKVRPP--YNVNVLTEATALFALEHV-------AVLDEQAAQLRAERSRVAEGMA-AH  296 (367)
T ss_dssp             -ECHHHHHH------------HGGGCCS--SCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHHHH-TS
T ss_pred             -eCHHHHHH------------HHHhCCC--CCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHH-hC
Confidence             57777776            6655443  357788888888888762       2366788899999999999998 76


Q ss_pred             -CCCCCcccccCCcceEEecCC-CHHHHHHHHHcccEEEeCCC----------eEEeccCChhhHHHHHHHHHHHHH
Q 012238          400 -KSGKDWSFILRQIGMFSFTGL-NKAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       400 -g~~~~~~~~~~~~g~f~~~~l-~~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                       |    +.+. +.+|+|+|+.+ +.+.+.+.++++||.+.+|+          ||+++  +++++++++++|+++++
T Consensus       297 ~g----~~~~-~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          297 GG----VTVF-PSAANFLLARVPDAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS--TPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             TT----CEEC-CCSSSEEEEECSCHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC--CHHHHHHHHHHHHHHTC
T ss_pred             CC----cEEC-CCCCeEEEEECCCHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC--CHHHHHHHHHHHHHHhc
Confidence             4    5644 45567888766 45444444566799998862          99987  67999999999999875

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=100.00  E-value=3.6e-40  Score=343.26  Aligned_cols=350  Identities=13%  Similarity=0.079  Sum_probs=260.9

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC-CCcchHHHHHHHHHHHhCC-CC-cccc-cCceeeeecCC
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-PIEGLAAFNKVTAELLFGA-DN-SVLK-EQRVATVQGLS  159 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~l~~~-~~-~~~~-~~~i~~~~t~g  159 (467)
                      ++|+|++|.|    +.+  ++.+.+++.+.+..   ..|. |..|.+++|+++++++... ++ ..+. +++|++  |+|
T Consensus       104 ~~i~l~~g~~----~~~--~~~~v~a~~~~~~~---~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~--t~G  172 (533)
T 3f6t_A          104 DAVNYCHTEL----GLN--RDKVVAEWVNGAVA---NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFP--TEG  172 (533)
T ss_dssp             HHHHHHHHTT----CCC--HHHHHHHHHHHHHT---CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEE--EEH
T ss_pred             hheeccCCCC----CcC--CcHHHHHHHHHHHh---CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEE--ECC
Confidence            4799999988    444  34444444444433   3454 7889999999999998544 23 3343 468999  999


Q ss_pred             chhHHHHHHHHHH---HhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeec--CCCCCCChhhHHHHHHcCCCCcEEEE
Q 012238          160 GTGSLRLAAALIE---RYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD--PKTVGLDFEGMIADIKAAPGGSFILL  234 (467)
Q Consensus       160 gt~al~l~~~~l~---~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~--~~~~~~d~~~l~~~l~~~~~~~~~i~  234 (467)
                      +++++.++...+.   .+.+||+|+++.|+|..|...++..|++++.++++.  +.++++|++.+++.++   +++++++
T Consensus       173 ~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~---~~~k~v~  249 (533)
T 3f6t_A          173 GTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKD---PSIKALI  249 (533)
T ss_dssp             HHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSC---TTEEEEE
T ss_pred             HHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhC---CCCeEEE
Confidence            9999999833211   356999999999999999999999999999998854  4578899999999886   5788888


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHH-hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCcc
Q 012238          235 HGCAHNPTGIDPTPEQWEKIADVIQ-EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI  313 (467)
Q Consensus       235 i~~p~NPTG~~~~~~~l~~l~~~~~-~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri  313 (467)
                      +++||||||.+++.+++++|+++|+ +||++||+||+|.++.++..     ++..  ...+++++++||||.+|++|+|+
T Consensus       250 l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~-----~~~~--~~~~~~i~~~S~SK~~g~~G~Ri  322 (533)
T 3f6t_A          250 VVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFK-----SIYS--VVPYNTMLVYSYSKLFGCTGWRL  322 (533)
T ss_dssp             EESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCC-----CHHH--HSGGGEEEEEESHHHHTCGGGCE
T ss_pred             EeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCcc-----CHhh--cCCCCEEEEecCcccCCCcccce
Confidence            8999999999999999999999999 68999999999999886521     1211  12368999999999999999999


Q ss_pred             ceEEEecCCHHHHhhhhhhh------------------------HHHHHHHHHhhccCccCCCchHHHHH----HHHHhC
Q 012238          314 GAMNVVCSSSDLAARCCEVA------------------------VIQVKSQLKRLARPMYSNPPVHGARI----VANVVG  365 (467)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~L~  365 (467)
                      ||++  +.++++++.--+..                        .-.+...+.........+++...|.+    +..+|.
T Consensus       323 G~l~--~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~  400 (533)
T 3f6t_A          323 GVIA--LNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLL  400 (533)
T ss_dssp             EEEE--EESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHT
T ss_pred             EEEE--ECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHh
Confidence            9996  34443333300000                        00011112334444456777777776    334453


Q ss_pred             C----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC--------------------
Q 012238          366 N----PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN--------------------  421 (467)
Q Consensus       366 ~----~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~--------------------  421 (467)
                      +    ..    +.+++++++++++++++.+.+.|.  ++    +.+..+++|+|+|+++.                    
T Consensus       401 ~~~g~~~----~~~~~~~~~~~~~~r~~~l~~~L~--~~----~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~  470 (533)
T 3f6t_A          401 TSTNGGS----DDPYIDIARKLVSERYDQLHDAMQ--AP----KDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFE  470 (533)
T ss_dssp             TCBGGGT----BCHHHHHHHHHHHHHHHHHHHHHT--CC----CCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCC
T ss_pred             hhccccc----hHHHHHHHHHHHHHHHHHHHHhcC--CC----ccccCCCceEEEEEehHhhhhhccchHHHHHhhccCC
Confidence            1    11    135578899999999999999885  34    56778899999997552                    


Q ss_pred             -HHHHHHHHHcccEEEeCC-------C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          422 -KAQSDNMTNKWHVYMTKD-------G--RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       422 -~~~~~~ll~~~gI~v~~g-------g--Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                       .+++.++++++||++.||       |  |||++.++++++++++++|.++++++
T Consensus       471 ~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~  525 (533)
T 3f6t_A          471 QVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQANLPTEDYALIGKQVLELLKEY  525 (533)
T ss_dssp             HHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHHH
Confidence             256778888889999997       2  99999779999999999999998764

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=100.00  E-value=1.1e-38  Score=317.97  Aligned_cols=303  Identities=17%  Similarity=0.150  Sum_probs=249.6

Q ss_pred             CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCC
Q 012238          119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDAR  198 (467)
Q Consensus       119 ~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G  198 (467)
                      ...|.+..|.++||+++++++..     +++++|++  |+||++++.++  +...+.+||+|+++.|+|..+...++..|
T Consensus        56 ~~~y~~~~g~~~l~~~la~~~~~-----~~~~~v~~--~~g~~~a~~~~--~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g  126 (375)
T 3op7_A           56 KLNYGWIEGSPAFKKSVSQLYTG-----VKPEQILQ--TNGATGANLLV--LYSLIEPGDHVISLYPTYQQLYDIPKSLG  126 (375)
T ss_dssp             CCSSCCTTCCHHHHHHHHTTSSS-----CCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESSCTHHHHHHHHTT
T ss_pred             CcCCCCCCChHHHHHHHHHHhcc-----CChhhEEE--cCChHHHHHHH--HHHhcCCCCEEEEeCCCchhHHHHHHHcC
Confidence            37899999999999999999642     33789999  99999999998  44457799999999999999999999999


Q ss_pred             CCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCC
Q 012238          199 VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS  278 (467)
Q Consensus       199 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~  278 (467)
                      ++++.++++++.++.+|++.+++.++   ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++.
T Consensus       127 ~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~  203 (375)
T 3op7_A          127 AEVDLWQIEEENGWLPDLEKLRQLIR---PTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELD  203 (375)
T ss_dssp             CEEEEEEEEGGGTTEECHHHHHHHCC---TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSC
T ss_pred             CEEEEEeccccCCCCCCHHHHHHhhc---cCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccC
Confidence            99999999755667789999999997   567788889999999999999999999999999999999999999988652


Q ss_pred             CCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                          ...   +.+..++++++.||||.++++|+|+||++   .++++++.            +.........+++.+.+.
T Consensus       204 ----~~~---~~~~~~~~i~~~s~sK~~~~~G~r~G~v~---~~~~l~~~------------~~~~~~~~~~~~~~~~~~  261 (375)
T 3op7_A          204 ----VPS---IIEVYDKGIAVNSLSKTYSLPGIRIGWVA---ANHQVTDI------------LRDYRDYTMICAGVFDDL  261 (375)
T ss_dssp             ----CCC---HHHHCTTEEEEEESSSSSSCGGGCCEEEE---CCHHHHHH------------HTTTGGGTTSCCCHHHHH
T ss_pred             ----CCc---hhhhcCCEEEEeEChhhcCCcccceEEEE---eCHHHHHH------------HHHHHhhhccCCCcHHHH
Confidence                111   12335678999999999999999999996   68888887            666665555567778888


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC----C-HHHHHHHHHccc
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----N-KAQSDNMTNKWH  433 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l----~-~~~~~~ll~~~g  433 (467)
                      ++..+|.+.      ++.+++.+++++++++.+.+.|+ +.+   .+.+..+.+++++|+.+    + .++++++++++|
T Consensus       262 ~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g  331 (375)
T 3op7_A          262 VAQLALAHY------QEILERNRHILEENLAILDQWIE-EEP---LVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHG  331 (375)
T ss_dssp             HHHHHHHTH------HHHHHHHHHHHHHHHHHHHHHHH-HCT---TEEECCCSSSSCEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             HHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHh-hCC---CceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhCC
Confidence            777776542      34577888889999999999998 653   15677788887776532    3 455777877789


Q ss_pred             EEEeCCC--------eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          434 VYMTKDG--------RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       434 I~v~~gg--------Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      |.+.||.        ||+++. +.+++++++++|.++++++
T Consensus       332 i~v~~g~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l~~~  371 (375)
T 3op7_A          332 VLLVPGNRFERDGYVRLGFAC-EQETLIKGLEKLSQFLRRF  371 (375)
T ss_dssp             EECEEGGGGTCTTEEEECCCS-CHHHHHHHHHHHHHHHGGG
T ss_pred             EEEeChhhhCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHH
Confidence            9999862        999987 6689999999999998865

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=100.00  E-value=1e-38  Score=325.55  Aligned_cols=365  Identities=14%  Similarity=0.090  Sum_probs=266.6

Q ss_pred             CCCcccchHHHhhc-CCCCCcE-EecCcccCCCCCC-CCchHHHHHHHHHHHhc-------C----CCCcCCCCcchHHH
Q 012238           66 PPDPILGVSEAFKA-DTDEKKL-NLGVGAYRTEELQ-PYVLDVVKKAENLMLER-------G----ENKEYLPIEGLAAF  131 (467)
Q Consensus        66 ~~~~i~~~~~~~~~-~~~~~~i-~l~~G~~~d~~~~-p~~~~~v~~a~~~~~~~-------~----~~~~Y~~~~G~~~l  131 (467)
                      +++++......+.+ ...+++| +|+.|.|    .. |.+.+.+.+++.+.+..       .    ....|.+..|.+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l   88 (444)
T 3if2_A           13 QPTGISQLMDDLGDALKSDQPVNMLGGGNP----AKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAF   88 (444)
T ss_dssp             SCCHHHHHHHHHHHHHHSSSCCEECSCCCC----CCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHH
T ss_pred             CchhHHHHHHHHHhhhcCchhhhccCCCCC----CcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHH
Confidence            34455555444321 1336899 9999988    22 22336677777776543       2    12569889999999


Q ss_pred             HHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCC--------------EEEEc-CCCCcchHH----
Q 012238          132 NKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA--------------KVLIS-SPTWGNHKN----  192 (467)
Q Consensus       132 r~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd--------------~Vlv~-~P~y~~~~~----  192 (467)
                      |+++|+++...+|..+++++|++  |+|++++++++  +...+.+||              +|+++ .|+|..|..    
T Consensus        89 r~~ia~~l~~~~g~~~~~~~i~~--t~G~t~al~~~--~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~  164 (444)
T 3if2_A           89 IDALVGFFNRHYDWNLTSENIAL--TNGSQNAFFYL--FNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVE  164 (444)
T ss_dssp             HHHHHHHHHHHHCCCCCGGGEEE--ESSHHHHHHHH--HHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSS
T ss_pred             HHHHHHHHHhhcCCCCCHHHEEE--ecCcHHHHHHH--HHHHhCCCccccccccccccccceEEEeCCCCccchhhcccc
Confidence            99999999777777778999999  99999999998  333456887              78876 899999876    


Q ss_pred             --HHhhCCCCeEEeeeecCC---CCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEE
Q 012238          193 --IFNDARVPWSEYRYYDPK---TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF  267 (467)
Q Consensus       193 --~~~~~G~~~~~v~~~~~~---~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~  267 (467)
                        .+...|..++.++.++++   ++++|++.++++++...++++++++++||||||.+++.+++++|+++|++||++||+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~  244 (444)
T 3if2_A          165 GQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLII  244 (444)
T ss_dssp             SCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             cchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEE
Confidence              345677788888774211   357999999988432126788999999999999999999999999999999999999


Q ss_pred             eccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC
Q 012238          268 DVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP  347 (467)
Q Consensus       268 Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~  347 (467)
                      ||+|..+..+....+..     ....++++++.||||. +++|+|+||++   .++++++.            +......
T Consensus       245 De~~~~~~~~~~~~~~~-----~~~~~~~i~~~S~sK~-~~~G~r~G~~~---~~~~l~~~------------~~~~~~~  303 (444)
T 3if2_A          245 DNAYGMPFPNIIYSDAH-----LNWDNNTILCFSLSKI-GLPGMRTGIIV---ADAKVIEA------------VSAMNAV  303 (444)
T ss_dssp             ECTTCTTTTCCBCSCCC-----CCCCTTEEEEEESTTT-TCGGGCCEEEE---CCHHHHHH------------HHHHHHH
T ss_pred             ECCCCCccccccccccc-----ccCCCCEEEEechhhc-cCCCCceEEEE---ECHHHHHH------------HHHHHHh
Confidence            99997543211000000     0224679999999997 78999999995   78888877            5444444


Q ss_pred             ccCCCchHHHHHHHHHhCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHhhhc-cCCCCCcccccCCcceEEecC-----C
Q 012238          348 MYSNPPVHGARIVANVVGNPALFDEWKAEMEM-MAGRIKNVRQKLFDSLSAK-DKSGKDWSFILRQIGMFSFTG-----L  420 (467)
Q Consensus       348 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~-~~~~~~~~r~~l~~~l~~~-~g~~~~~~~~~~~~g~f~~~~-----l  420 (467)
                      ...+++.+.|.++..++.+..+    .+++.+ +++.++++++.+.+.|+ + ++- ..+.+..+.+|+|+|+.     .
T Consensus       304 ~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~-~~~~~~~~~~g~~~~~~~~~~~~  377 (444)
T 3if2_A          304 VNLAPTRFGAAIATPLVANDRI----KQLSDNEIKPFYQKQATLAVKLLK-QALGD-YPLMIHKPEGAIFLWLWFKDLPI  377 (444)
T ss_dssp             HHSSCCCHHHHHHHHHHHTSHH----HHHHHHTHHHHHHHHHHHHHHHHH-HHSSS-SSEEEECCCBSSEEEEEETTCSS
T ss_pred             ccCCCChHHHHHHHHHHHcCch----hHHHHHHHHHHHHHHHHHHHHHHH-Hhccc-CCceEecCCccEEEEEEcCCCCC
Confidence            4456677888888888877654    333443 67788888888888877 4 321 02566778899999873     3


Q ss_pred             CHHHHHHHHHcccEEEeCC----------------C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          421 NKAQSDNMTNKWHVYMTKD----------------G--RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       421 ~~~~~~~ll~~~gI~v~~g----------------g--Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +.+.+...++++||.+.+|                +  |||++. +++++++++++|.++++++
T Consensus       378 ~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~~~  440 (444)
T 3if2_A          378 STLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA-DEQTLIDGIKVIGEVVREL  440 (444)
T ss_dssp             CHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS-CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC-CHHHHHHHHHHHHHHHHHH
Confidence            4544444445679999864                2  999998 9999999999999998764

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=100.00  E-value=3.6e-38  Score=312.31  Aligned_cols=313  Identities=16%  Similarity=0.188  Sum_probs=242.8

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (467)
                      ++|||+.|++    .+++ ++.+      .+ . ....|++ .+.+++|+++|+++..      ++++|++  |+|++++
T Consensus        30 ~~i~l~~~~~----~~~~-~~~v------a~-~-~~~~Y~~-~~~~~lr~~la~~~~~------~~~~v~~--~~G~~~a   87 (356)
T 1fg7_A           30 GDVWLNANEY----PTAV-EFQL------TQ-Q-TLNRYPE-CQPKAVIENYAQYAGV------KPEQVLV--SRGADEG   87 (356)
T ss_dssp             CSEECSSCCC----SSCC-CCCC------CC-C-CTTSCCC-SSCHHHHHHHHHHHTS------CGGGEEE--ESHHHHH
T ss_pred             ceEEeeCCCC----CCCC-CHhH------hh-h-hhccCCC-ccHHHHHHHHHHHhCC------ChHHEEE--cCCHHHH
Confidence            6899999987    3333 3333      12 2 2367855 4689999999999732      2789999  9999999


Q ss_pred             HHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          164 LRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       164 l~l~~~~l~~~~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      ++++  +...+.+| |+|+++.|+|..|...++..|++++.+|.+  +++++|++.+++.++    +++++++++|||||
T Consensus        88 i~~~--~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~----~~~~v~l~~p~npt  159 (356)
T 1fg7_A           88 IELL--IRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQLDLQGISDKLD----GVKVVYVCSPNNPT  159 (356)
T ss_dssp             HHHH--HHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--TTSCCCHHHHHTSCT----TEEEEEEESSCTTT
T ss_pred             HHHH--HHHHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCC--CCCCCCHHHHHHHhc----CCCEEEEeCCCCCC
Confidence            9997  34446799 999999999999999999999999999884  457899999988774    56788889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (467)
                      |.+++.+++++|+++|+ +|+++|+||+|.++..+   ....   .+.+..+++++++||||.||++|+|+||++   .+
T Consensus       160 G~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~---~~~~---~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~---~~  229 (356)
T 1fg7_A          160 GQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ---ASLA---GWLAEYPHLAILRTLSKAFALAGLRCGFTL---AN  229 (356)
T ss_dssp             CCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG---GCSG---GGTTTCTTEEEEEESSSTTCCGGGCCEEEE---EC
T ss_pred             CCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC---CcHH---HHHhhCCCEEEEecchHhhcCchhhhEEEE---eC
Confidence            99999999999999999 99999999999987621   1111   222344679999999999999999999996   57


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238          323 SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  402 (467)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~  402 (467)
                      +++++.            +......+  +++.++|.++..+|.+..+     +++++.+++++++|+++.+.|+ +++. 
T Consensus       230 ~~~~~~------------l~~~~~~~--~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~~L~-~~~~-  288 (356)
T 1fg7_A          230 EEVINL------------LMKVIAPY--PLSTPVADIAAQALSPQGI-----VAMRERVAQIIAEREYLIAALK-EIPC-  288 (356)
T ss_dssp             HHHHHH------------HHHHSCSS--CSCHHHHHHHHHHTSHHHH-----HHHHHHHHHHHHHHHHHHHHHH-HSTT-
T ss_pred             HHHHHH------------HHHhcCCC--CCCHHHHHHHHHHhcCccH-----HHHHHHHHHHHHHHHHHHHHHH-hCCC-
Confidence            888777            65554432  6778888888888875432     1367888999999999999999 7651 


Q ss_pred             CCcccccCCcceEEecCC-CHH-HHHHHHHcccEEEeC-C------C--eEEeccCChhhHHHHHHHHHHH
Q 012238          403 KDWSFILRQIGMFSFTGL-NKA-QSDNMTNKWHVYMTK-D------G--RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       403 ~~~~~~~~~~g~f~~~~l-~~~-~~~~ll~~~gI~v~~-g------g--Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                        +....+.+|+|+|+.+ +.+ +.+++ .++||.+.+ |      +  ||+++  +++++++++++|+++
T Consensus       289 --~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~~g~~~~~~~~iRis~~--~~~e~~~~~~~l~~~  354 (356)
T 1fg7_A          289 --VEQVFDSETNYILARFKASSAVFKSL-WDQGIILRDQNKQPSLSGCLRITVG--TREESQRVIDALRAE  354 (356)
T ss_dssp             --EEEECCCSSSEEEEEETTHHHHHHHH-HHTTEECEECTTSTTCTTEEEEECC--CHHHHHHHHHHHHTC
T ss_pred             --ceEECCCCCeEEEEECCCHHHHHHHH-HHCCEEEEECCCCCCCCCeEEEEeC--CHHHHHHHHHHHHhh
Confidence              2233455677888865 344 45555 567999998 5      2  99998  478999999998764

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=100.00  E-value=5.5e-37  Score=300.86  Aligned_cols=312  Identities=16%  Similarity=0.170  Sum_probs=244.8

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      .+.|+|+.+++    ..++ ++.+++++.+....  ...| |..|.+++|+++++++...      +++|++  |+|+++
T Consensus        16 ~~~i~l~~n~~----~~~~-~~~v~~a~~~~~~~--~~~y-~~~~~~~lr~~la~~~~~~------~~~i~~--t~G~~~   79 (337)
T 3p1t_A           16 AQAVCLAFNEN----PEAV-EPRVQAAIAAAAAR--INRY-PFDAEPRVMRKLAEHFSCP------EDNLML--VRGIDE   79 (337)
T ss_dssp             CCCEECSSCCC----CSCC-CHHHHHHHHHHGGG--TTSC-CTTHHHHHHHHHHHHHTSC------GGGEEE--ESHHHH
T ss_pred             CCceEeeCCCC----CCCC-CHHHHHHHHHhhhh--hccC-CCCchHHHHHHHHHHhCcC------HHHEEE--eCCHHH
Confidence            47899998865    4444 78899999888754  3678 6789999999999997432      779999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      ++.++   +..+ +||+|+++.|+|..+...++..|++++.++++  +++++|++.+++.     .+++++++++|||||
T Consensus        80 ~l~~~---~~~~-~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~-----~~~~~v~i~~p~npt  148 (337)
T 3p1t_A           80 CFDRI---SAEF-SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLT--DDLLLDPNDLAQV-----SRDDCVVLANPSNPT  148 (337)
T ss_dssp             HHHHH---HHHS-TTSEEEEESSSCSHHHHHHTTSCCEEEEECBC--TTSSBCHHHHTTC-----CTTEEEEEESSCTTT
T ss_pred             HHHHH---HHhc-CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHhh-----cCCCEEEEeCCCCCC
Confidence            99997   3334 99999999999999999999999999999984  4578999988764     356799999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (467)
                      |.+++.+++.+|   |+++++ +|+||+|.++.....  ..      ....+++++++||||.+|++|+|+||++   .+
T Consensus       149 G~~~~~~~l~~l---~~~~~~-~ivDea~~~~~~~~~--~~------~~~~~~~i~~~S~sK~~g~~G~r~G~~~---~~  213 (337)
T 3p1t_A          149 GQALSAGELDQL---RQRAGK-LLIDETYVDYSSFRA--RG------LAYGENELVFRSFSKSYGLAGLRLGALF---GP  213 (337)
T ss_dssp             CCCCCHHHHHHH---HHHCSE-EEEECTTGGGSSCSS--SC------CCCBTTEEEEEESSSTTCCTTTCCEEEE---CC
T ss_pred             CCCCCHHHHHHH---HHhCCc-EEEECCChhhccccc--cc------cccCCCEEEEeeCchhccCcchheEEEE---eC
Confidence            999999977776   667776 566999998775421  10      1234578999999999999999999995   78


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238          323 SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  402 (467)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~  402 (467)
                      +++++.            +.....  ..+++.+.+.++..+|++...       +.+..+++.++|+.+.+.|+ ++|  
T Consensus       214 ~~~~~~------------l~~~~~--~~~~~~~~~~a~~~~l~~~~~-------~~~~~~~~~~~~~~l~~~L~-~~g--  269 (337)
T 3p1t_A          214 SELIAA------------MKRKQW--FCNVGTLDLHALEAALDNDRA-------REAHIAKTLAQRRRVADALR-GLG--  269 (337)
T ss_dssp             HHHHHH------------HHTTSC--TTCSCHHHHHHHHHHHTCHHH-------HHHHHHHHHHHHHHHHHHHH-HTT--
T ss_pred             HHHHHH------------HHhhcC--CCCCCHHHHHHHHHHhCCHHH-------HHHHHHHHHHHHHHHHHHHH-HCc--
Confidence            888777            655433  346677788888888876422       33455666777899999999 776  


Q ss_pred             CCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCC--------eEEeccCChhhHHHHHHHHHHHHH
Q 012238          403 KDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       403 ~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                        +.+.++++++++|...+.+.+.++++++||.+.+|.        |||++  +++++++++++|+++++
T Consensus       270 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~~~~~l~~al~~~~~  335 (337)
T 3p1t_A          270 --YRVASSEANFVLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIG--REEDNDRLLAALAEYSD  335 (337)
T ss_dssp             --CCBCCCSSSEEEEECTTTHHHHHHHHHTTEECEEGGGGTCCSEEEEECC--CHHHHHHHHHHHHHHTC
T ss_pred             --CEECCCCCeEEEEEcCCHHHHHHHHHHCCeEEEECccCCCCCeEEEecC--CHHHHHHHHHHHHHHhh
Confidence              567777777666555455555666667899999872        99988  57899999999998764

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=100.00  E-value=4.9e-39  Score=334.94  Aligned_cols=338  Identities=12%  Similarity=0.047  Sum_probs=249.4

Q ss_pred             cEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCC-CCc---ccccCceeeeecCCc
Q 012238           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA-DNS---VLKEQRVATVQGLSG  160 (467)
Q Consensus        85 ~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~-~~~---~~~~~~i~~~~t~gg  160 (467)
                      +|+|++|.+    +++  ++.+.+++.+.+..   ..|++..|.+++|+++++++... ++.   ..++++|++  |+|+
T Consensus       106 ~i~l~~g~~----~~~--~~~~~~al~~~~~~---~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~--t~G~  174 (546)
T 2zy4_A          106 SLSYVRDQL----GLD--PAAFLHEMVDGILG---CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFA--VEGG  174 (546)
T ss_dssp             HHHHHHHTS----CCC--HHHHHHHHHHHHHT---CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEE--EEHH
T ss_pred             hhecccCCC----CCC--ChHHHHHHHHhhhc---CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEE--ECCH
Confidence            799999987    554  45566666665532   57988889999999988766422 222   125689999  9999


Q ss_pred             hhHHHHHHHHHH---HhCCCCEEEEcCCCCcchHHHHhh--CCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238          161 TGSLRLAAALIE---RYFPGAKVLISSPTWGNHKNIFND--ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (467)
Q Consensus       161 t~al~l~~~~l~---~~~~gd~Vlv~~P~y~~~~~~~~~--~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i  235 (467)
                      ++++.++...+.   .+.|||+|++++|+|+.|...+..  .|++++.++++++.++.+|++.+++.+.   .+++++++
T Consensus       175 ~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~v~l  251 (546)
T 2zy4_A          175 TAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD---PAIKIFFC  251 (546)
T ss_dssp             HHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS---TTEEEEEE
T ss_pred             HHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC---CCCeEEEE
Confidence            999999743321   256999999999999999987554  4688889988666668899999988764   57788888


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHH--HhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCcc
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVI--QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI  313 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~--~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri  313 (467)
                      ++||||||.+++.+++++|+++|  +++|++||+||+|.++.++.     .++...  ..+++++++||||.+|++|+|+
T Consensus       252 ~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~-----~s~~~~--~~~~~i~~~S~SK~~g~~GlRi  324 (546)
T 2zy4_A          252 VNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDF-----QSLFAI--CPENTLLVYSFSKYFGATGWRL  324 (546)
T ss_dssp             ESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTC-----CCHHHH--CGGGEEEEEESTTTTTCGGGCE
T ss_pred             ECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccC-----cCHHHh--CCCCEEEEEeCccccCCCCcce
Confidence            99999999999999999999999  78999999999999987531     122122  1257999999999999999999


Q ss_pred             ceEEEecCCHHHHhhhhhhhHHHHHH--------HHH-h-----------------------hccCccCCCchHHHHHH-
Q 012238          314 GAMNVVCSSSDLAARCCEVAVIQVKS--------QLK-R-----------------------LARPMYSNPPVHGARIV-  360 (467)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~~~~~~~--------~l~-~-----------------------~~~~~~~~~~~~~~~~~-  360 (467)
                      ||++  +.++++++.        +..        ++. .                       .......+++.+.|.++ 
T Consensus       325 G~~~--~~~~~l~~~--------l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a  394 (546)
T 2zy4_A          325 GVVA--AHQQNVFDL--------ALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMA  394 (546)
T ss_dssp             EEEE--EESSCHHHH--------HHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHH
T ss_pred             EEEE--ECCHHHHHH--------HHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHH
Confidence            9996  343336655        211        000 0                       01122335667777653 


Q ss_pred             ----HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC---------------
Q 012238          361 ----ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN---------------  421 (467)
Q Consensus       361 ----~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~---------------  421 (467)
                          ..++.+.      ..+++++++.|+++++.+.+.|. . +    +...++++|||+|+++.               
T Consensus       395 ~~a~~all~~~------~~~~~~~r~~~~~r~~~l~~~L~-~-~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl  462 (546)
T 2zy4_A          395 LFSLFALMDEA------DEYKHTLKQLIRRRETTLYRELG-M-P----PLRDENAVDYYTLIDLQDVTAKLYGEAFSEWA  462 (546)
T ss_dssp             HHHHHHHHCTT------CHHHHHHHHHHHHHHHHHHGGGT-S-S----CCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHhcC-C-C----cccCCCCeeEEEEEEHHHhhcccccHHHHHHh
Confidence                2345442      23366788889999998888775 2 2    34567889999987542               


Q ss_pred             ------HHHHHHHHHcccEEEeCC-------C--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          422 ------KAQSDNMTNKWHVYMTKD-------G--RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       422 ------~~~~~~ll~~~gI~v~~g-------g--Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                            .+++.++++++||.+.||       +  |||++..+++++++++++|++++++
T Consensus       463 ~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~  521 (546)
T 2zy4_A          463 VKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAIGRALRKMADE  521 (546)
T ss_dssp             HHHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESSSSCHHHHHHHHHHHHHHHHH
T ss_pred             hccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence                  244667777789999997       2  9999977889999999999998765

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=100.00  E-value=4.6e-37  Score=305.12  Aligned_cols=340  Identities=13%  Similarity=0.104  Sum_probs=254.6

Q ss_pred             CCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCc
Q 012238           66 PPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNS  145 (467)
Q Consensus        66 ~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~  145 (467)
                      ++..+.++...+..+ +.++|||+.|.+    ..+ .++.+.+++.+.+..  ...|. ..|..++|+++++++..    
T Consensus         8 ~g~~~~~~~~~~~~~-~~~~idl~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y~-~~~~~~l~~~la~~~~~----   74 (364)
T 1lc5_A            8 HGGNIREPATVLGIS-PDQLLDFSANIN----PLG-MPVSVKRALIDNLDC--IERYP-DADYFHLHQALARHHQV----   74 (364)
T ss_dssp             SSCCCHHHHHHHTSC-GGGSEECSSCCC----TTC-CCHHHHHHHHHTGGG--GGSCC-CTTCHHHHHHHHHHHTS----
T ss_pred             CCccHHHHHHhcCCC-ccceEEeccccC----CCC-CCHHHHHHHHHHHHH--hhcCC-CCCHHHHHHHHHHHHCc----
Confidence            444455555555433 347899999986    333 378889998887754  36684 46899999999999742    


Q ss_pred             ccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc
Q 012238          146 VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA  225 (467)
Q Consensus       146 ~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~  225 (467)
                        ++++|++  |+|+++++.++.   ..+ +||+|+++.|+|..+...++..|++++.+|.++++++.+ ++.+.+.+. 
T Consensus        75 --~~~~v~~--~~g~~~al~~~~---~~~-~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~-  144 (364)
T 1lc5_A           75 --PASWILA--GNGETESIFTVA---SGL-KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALT-  144 (364)
T ss_dssp             --CGGGEEE--ESSHHHHHHHHH---HHH-CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCC-
T ss_pred             --CHHHEEE--CCCHHHHHHHHH---HHc-CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhcc-
Confidence              2679999  999999999973   334 789999999999999999999999999999853223333 465555553 


Q ss_pred             CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC
Q 012238          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (467)
Q Consensus       226 ~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (467)
                        ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++..  ...   .+.+..++++++.|+||.
T Consensus       145 --~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~---~~~~~~~~~i~~~s~sK~  217 (364)
T 1lc5_A          145 --PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET--GFI---PALKDNPHIWVLRSLTKF  217 (364)
T ss_dssp             --TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC--CSG---GGCTTCTTEEEEEESTTT
T ss_pred             --CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCcc--chh---hHhccCCCEEEEEECchh
Confidence              4567788899999999999999999999999999999999999998876421  111   112334678999999999


Q ss_pred             cccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238          306 LGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  385 (467)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~  385 (467)
                      ++++|+|+||++  +.++++++.            +.....  ..+++.+++.++..+|++.       +++++.+++++
T Consensus       218 ~~~~G~r~G~~~--~~~~~~~~~------------l~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~  274 (364)
T 1lc5_A          218 YAIPGLRLGYLV--NSDDAAMAR------------MRRQQM--PWSVNALAALAGEVALQDS-------AWQQATWHWLR  274 (364)
T ss_dssp             TTCTTTCCEEEE--CCCHHHHHH------------HHHHSC--TTCSCHHHHHHHHHGGGCH-------HHHHHHHHHHH
T ss_pred             hcCCccceEEEE--ECCHHHHHH------------HHHhCC--CCCCCHHHHHHHHHHHhCc-------HHHHHHHHHHH
Confidence            999999999994  478888877            554443  3367788888888888763       23678888999


Q ss_pred             HHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC---HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhH
Q 012238          386 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKC  452 (467)
Q Consensus       386 ~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i  452 (467)
                      ++++.+.+.|+ +++  + +++.++. |.|+|+.+.   .++.+.+++ +||.+.+|        +  ||+++.  ++++
T Consensus       275 ~~~~~l~~~L~-~~~--~-~~~~~~~-g~~~~~~~~~~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~iRis~~~--~~~~  346 (364)
T 1lc5_A          275 EEGARFYQALC-QLP--L-LTVYPGR-ANYLLLRCEREDIDLQRRLLT-QRILIRSCANYPGLDSRYYRVAIRS--AAQN  346 (364)
T ss_dssp             HHHHHHHHHHH-TST--T-EEECCCS-SSEEEEEESCTTCCHHHHHHT-TTEECEECTTSTTCCTTEEEEECCC--HHHH
T ss_pred             HHHHHHHHHHh-cCC--C-CEECCCC-CeEEEEECCCcHHHHHHHHHH-CCcEEeeCcccCCCCCCEEEEEeCC--HHHH
Confidence            99999999998 762  1 5665554 556666442   245666665 59999875        2  999874  6889


Q ss_pred             HHHHHHHHHHHHhc
Q 012238          453 EYLADAIIDSYHNV  466 (467)
Q Consensus       453 ~~~~~~l~~~l~~~  466 (467)
                      ++++++|+++++++
T Consensus       347 ~~l~~~l~~~~~~~  360 (364)
T 1lc5_A          347 ERLLAALRNVLTGI  360 (364)
T ss_dssp             HHHHHHHHHHC---
T ss_pred             HHHHHHHHHHhhcc
Confidence            99999999887653

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=100.00  E-value=8.2e-37  Score=302.55  Aligned_cols=321  Identities=16%  Similarity=0.171  Sum_probs=252.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      ++++|||+.|.+    ..++ ++.+.+++.+.+..  ...| +..+..++|+++++++..      ++++|++  |+|++
T Consensus        25 ~~~~idl~~~~~----~~~~-~~~v~~a~~~~~~~--~~~y-~~~~~~~l~~~la~~~~~------~~~~i~~--~~g~t   88 (361)
T 3ftb_A           25 GRELLDYSSNIN----PLGI-PKSFLNNIDEGIKN--LGVY-PDVNYRRLNKSIENYLKL------KDIGIVL--GNGAS   88 (361)
T ss_dssp             ---CEETTCCCC----TTCS-CHHHHTTHHHHHHG--GGSC-CCTTCHHHHHHHHHHHTC------CSCEEEE--ESSHH
T ss_pred             CCCEEEecCCCC----CCCC-CHHHHHHHHHHHHH--hcCC-CCccHHHHHHHHHHHhCC------CcceEEE--cCCHH
Confidence            458999999976    4443 78899999888765  2567 667899999999999742      3789999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      ++++++   +..+   |+|+++.|+|..+...++..|++++.+++++  +.+++++.+++.++   + ++++++++||||
T Consensus        89 ~al~~~---~~~~---d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~l~~~l~---~-~~~v~i~~p~np  156 (361)
T 3ftb_A           89 EIIELS---ISLF---EKILIIVPSYAEYEINAKKHGVSVVFSYLDE--NMCIDYEDIISKID---D-VDSVIIGNPNNP  156 (361)
T ss_dssp             HHHHHH---HTTC---SEEEEEESCCTHHHHHHHHTTCEEEEEECCT--TSCCCHHHHHHHTT---T-CSEEEEETTBTT
T ss_pred             HHHHHH---HHHc---CcEEEecCChHHHHHHHHHcCCeEEEeecCc--ccCCCHHHHHHhcc---C-CCEEEEeCCCCC
Confidence            999997   3333   9999999999999999999999999999853  34688899999887   3 678889999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++++|+++|++||+++|+||+|.++.++ ....   ........+++++++|+||.++++|+|+||++  ++
T Consensus       157 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~---~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~--~~  230 (361)
T 3ftb_A          157 NGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSS---FVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGI--TN  230 (361)
T ss_dssp             TTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSS---SGGGTTTCSSEEEEEESSSTTSCGGGCCEEEE--ES
T ss_pred             CCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cccc---hhHhcccCCCEEEEeeChhhcCCCCcceeEEE--eC
Confidence            999999999999999999999999999999988875 1111   11223345688999999999999999999985  58


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +......  .+++.+.+.++..+|++.       +.+++.+++++++++.+.+.|+ +++.
T Consensus       231 ~~~~~~~------------~~~~~~~--~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~-~~~~  288 (361)
T 3ftb_A          231 NKEIAAK------------IKAKQNP--WNINCFAEMAAINCLKDT-------NYIEESLLWIKKERKRFIEELN-KIGF  288 (361)
T ss_dssp             CHHHHHH------------HHTTSCT--TCSCHHHHHHHHHTSSCH-------HHHHHHHHHHHHHHHHHHHHHH-HSSS
T ss_pred             CHHHHHH------------HHhhCCC--CCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence            8888877            6655443  367788888888888753       3367888999999999999998 7631


Q ss_pred             CCCcc-cccCCcceEEecCC---CHH-HHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          402 GKDWS-FILRQIGMFSFTGL---NKA-QSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       402 ~~~~~-~~~~~~g~f~~~~l---~~~-~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                         +. +.++.++ |+|+.+   +.+ +.+.+++ +||.+.+|        +  ||+++  ++++++++.++|+++.+.
T Consensus       289 ---~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~~  360 (361)
T 3ftb_A          289 ---IKRVFSPHAN-FVLCRLENISGEKLYDSLLK-EDIVIRRCCNFIGLDDSFVRFAIK--DEKKNTKFLRALKGVENN  360 (361)
T ss_dssp             ---EEEEECCSSS-EEEEEESSSCHHHHHHHHHT-TTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred             ---CceecCCCCe-EEEEEcCCCCHHHHHHHHHH-CCeEEeeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHhc
Confidence               56 5566655 556543   444 4556655 59999986        2  99987  567888999999888765

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=100.00  E-value=6.8e-41  Score=336.14  Aligned_cols=341  Identities=14%  Similarity=0.074  Sum_probs=266.3

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      ++.|||++|.+    .+++ ++.+.+++.+.+... ...|.+.  ..++|+++++++...+|..+++++|++  |+|+++
T Consensus        31 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~--~~g~~~  100 (392)
T 3b1d_A           31 PQLLPAWIADM----DFEV-MPEVKQAIHDYAEQL-VYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVF--VEGVVP  100 (392)
Confidence            37899999987    5554 778888888877543 3667554  889999999998877777677889999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCC-CCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      ++.++  +...+.+||+|+++.|+|..+...++..|++++.+++.+++ ++.+|++.+++.+++  .+++++++++||||
T Consensus       101 a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~np  176 (392)
T 3b1d_A          101 AISIA--IQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE--NDVKLYLLCNPHNP  176 (392)
Confidence            99997  33346689999999999999999999999999999884232 466899999998863  35667888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcccCCCccceEEEec
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      ||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+... .++++++.||||.++++|+|+||++  +
T Consensus       177 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~--~  252 (392)
T 3b1d_A          177 GGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGH--EHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAI--I  252 (392)
Confidence            99999999999999999999999999999999987531  11122222121 4688999999999999999999996  3


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhccCc-cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-  398 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~-  398 (467)
                      .++++++.            +....... +.+++.++|.++..+|.+.      .+++++.+++++++++.+.+.|+ + 
T Consensus       253 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~-~~  313 (392)
T 3b1d_A          253 ENPTLCAQ------------FKHQQLVNNHHEVSSLGYIATETAYRYG------KPWLVALKAVLEENIQFAVEYFA-QE  313 (392)
Confidence            44557776            55444443 2356777777777777642      23467888999999999999998 6 


Q ss_pred             cCCCCCcccccCCcceEEecCCC-----H-HHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHH
Q 012238          399 DKSGKDWSFILRQIGMFSFTGLN-----K-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       399 ~g~~~~~~~~~~~~g~f~~~~l~-----~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                      ++  + +.+..+.+++++|+.+.     . ++.+++++++||.+.+|        +  ||+++. +++++++++++|+++
T Consensus       314 ~~--~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~e~i~~~l~~l~~~  389 (392)
T 3b1d_A          314 AP--R-LKVMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA-PKSLVEEICKRIVCC  389 (392)
Confidence            42  1 67788899999887552     2 34566665679999886        1  999988 789999999999988


Q ss_pred             HH
Q 012238          463 YH  464 (467)
Q Consensus       463 l~  464 (467)
                      ++
T Consensus       390 l~  391 (392)
T 3b1d_A          390 LP  391 (392)
Confidence            75

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=100.00  E-value=1.4e-36  Score=302.18  Aligned_cols=325  Identities=14%  Similarity=0.164  Sum_probs=250.2

Q ss_pred             cEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        85 ~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      .|||+.|.+    ..++ ++.+.+++.+.+...  ....|.+..+ .++|+++++++...+|..+++++|++  |+|+++
T Consensus        32 ~idl~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~--~~G~~~  103 (369)
T 3cq5_A           32 DIRLNTNEN----PYPP-SEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWA--ANGSNE  103 (369)
T ss_dssp             SEECSSCCC----CSCC-CHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEE--ESHHHH
T ss_pred             ceeccCCCC----CCCC-CHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEE--CCChHH
Confidence            499999987    4443 788888888877431  1367866555 79999999998665555566889999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      +++++  +...+.+||+|+++.|+|..+...++..|++++.+|.  ++++++|++.+++.+++  .+++++++++|||||
T Consensus       104 al~~~--~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~npt  177 (369)
T 3cq5_A          104 ILQQL--LQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSR--GADFRIDMDVALEEIRA--KQPDIVFVTTPNNPT  177 (369)
T ss_dssp             HHHHH--HHHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEEC--CTTSSCCHHHHHHHHHH--HCCSEEEEESSCTTT
T ss_pred             HHHHH--HHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecC--CcCCCCCHHHHHHHhhc--cCCCEEEEeCCCCCC
Confidence            99987  3444679999999999999999999999999999986  34578999999999974  145677789999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC-eEEEEecCccCcccCCCccceEEEecC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM-ELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      |.+++.+++.+|+   +.+++++|+||+|.++.++   ....   .+.+..+ +++++.|+||.++++|+|+||++   .
T Consensus       178 G~~~~~~~l~~l~---~~~~~~li~De~~~~~~~~---~~~~---~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~---~  245 (369)
T 3cq5_A          178 GDVTSLDDVERII---NVAPGIVIVDEAYAEFSPS---PSAT---TLLEKYPTKLVVSRTMSKAFDFAGGRLGYFV---A  245 (369)
T ss_dssp             CCCCCHHHHHHHH---HHCSSEEEEECTTGGGCCS---CCGG---GGTTTCTTTEEEEEESSSTTSCGGGCCEEEE---E
T ss_pred             CCCCCHHHHHHHH---HhCCCEEEEECCchhhcCC---cchH---HHHhhCCCCEEEEEechHhcCCcccceEEEE---e
Confidence            9999998777775   4556999999999988753   1111   1223334 78999999999999999999996   5


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +......  .+++.+.+.++..+|++.       +++++.+++++++++.+.+.|+ +.| 
T Consensus       246 ~~~~~~~------------l~~~~~~--~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~-~~g-  302 (369)
T 3cq5_A          246 NPAFIDA------------VMLVRLP--YHLSALSQAAAIVALRHS-------ADTLGTVEKLSVERVRVAARLE-ELG-  302 (369)
T ss_dssp             CTHHHHH------------HHTTSCT--TCSCHHHHHHHHHHHHTH-------HHHHTHHHHHHHHHHHHHHHHH-HHT-
T ss_pred             CHHHHHH------------HHHcCCC--CCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHH-hCC-
Confidence            6667776            6554443  357788888888887653       2366788899999999999998 766 


Q ss_pred             CCCcccccCCcceEEecCC--CHHH-HHHHHHcccEEEeCCC-----eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          402 GKDWSFILRQIGMFSFTGL--NKAQ-SDNMTNKWHVYMTKDG-----RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l--~~~~-~~~ll~~~gI~v~~gg-----Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                         +.+.++ .|.|+|+.+  +.+. .+.+ .++||.+.+||     ||+++  +++++++++++|+++++.
T Consensus       303 ---~~~~~~-~~~~~~~~~~~~~~~l~~~l-~~~gi~v~~~~~~~~iRis~~--~~~~i~~~~~~l~~~~~~  367 (369)
T 3cq5_A          303 ---YAVVPS-ESNFVFFGDFSDQHAAWQAF-LDRGVLIRDVGIAGHLRTTIG--VPEENDAFLDAAAEIIKL  367 (369)
T ss_dssp             ---CEEECC-SSSEEEEECCSSHHHHHHHH-HHTTEECBCCSCTTEEEEECC--CHHHHHHHHHHHHHHHTT
T ss_pred             ---CEECCC-CCeEEEEECCCCHHHHHHHH-HHCCEEEEECCCCCeEEEEeC--CHHHHHHHHHHHHHHHhc
Confidence               466544 455777654  4444 4555 56799999973     99998  578999999999998753

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=100.00  E-value=4.8e-36  Score=297.28  Aligned_cols=316  Identities=15%  Similarity=0.140  Sum_probs=243.1

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +++|+|+.|.+    .+++ ++.+.+++.+.+...  ....| +..+..++|+++++++.      +++++|++  |+|+
T Consensus        26 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~lr~~la~~~g------~~~~~i~~--t~g~   91 (360)
T 3hdo_A           26 ASWIKLNTNEN----PYPP-SPEVVKAILEELGPDGAALRIY-PSASSQKLREVAGELYG------FDPSWIIM--ANGS   91 (360)
T ss_dssp             TTSEECSSCCC----SSCC-CHHHHHHHHHHHTTTCGGGGSC-CCSSCHHHHHHHHHHHT------CCGGGEEE--ESSH
T ss_pred             cceeeccCCCC----CCCC-CHHHHHHHHHHHhcccchhhcC-CCCchHHHHHHHHHHhC------cCcceEEE--cCCH
Confidence            47999999987    5554 789999999887653  12567 44577999999999974      33789999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      ++++.++  +...+.+||+|+++.|+|..+...++..|++++.++.++  ++.+  +.+++.+     +++++++++|+|
T Consensus        92 ~~al~~~--~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~--~~l~~~~-----~~~~v~i~~p~n  160 (360)
T 3hdo_A           92 DEVLNNL--IRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTG--DFRI--AGFPERY-----EGKVFFLTTPNA  160 (360)
T ss_dssp             HHHHHHH--HHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCT--TSSB--TTCCSSB-----CSSEEEEESSCT
T ss_pred             HHHHHHH--HHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCC--CCCH--HHHHhhc-----CCCEEEEeCCCC
Confidence            9999998  444567999999999999999999999999999999842  3333  4443322     234888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      |||.+++.+++.+|   |+++|+++|+||+|.++...    ...   .+.+..++++++.|+||.+|++|+|+||++   
T Consensus       161 ptG~~~~~~~l~~l---~~~~~~~li~De~~~~~~~~----~~~---~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~---  227 (360)
T 3hdo_A          161 PLGPSFPLEYIDEL---ARRCAGMLVLDETYAEFAES----NAL---ELVRRHENVVVTRTLSKSYSLAGMRIGLAI---  227 (360)
T ss_dssp             TTCCCCCHHHHHHH---HHHBSSEEEEECTTGGGSSC----CCT---HHHHHCSSEEEEEESTTTTSCTTSCCEEEE---
T ss_pred             CCCCCcCHHHHHHH---HHHCCCEEEEECChHhhCCc----chh---HHhccCCCEEEEecchHhhcCCccceeeEe---
Confidence            99999999876665   78899999999999987432    111   223445789999999999999999999996   


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      .++++++.            +......  .+++.+.+.++..+|++.       +.+++.+++++++++.+.+.|+ +++
T Consensus       228 ~~~~~~~~------------~~~~~~~--~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~-~~~  285 (360)
T 3hdo_A          228 ARPEVIAA------------LDKIRDH--YNLDRLAQAACVAALRDQ-------AYLSECCRRIRETREWFTTELR-SIG  285 (360)
T ss_dssp             CCHHHHHH------------HHHHSCS--CCSCHHHHHHHHHHHHCH-------HHHHHHHHHHHHHHHHHHHHHH-HTT
T ss_pred             eCHHHHHH------------HHHhCCC--CCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHH-HCC
Confidence            68888877            5555443  457788888888888753       2367888999999999999999 776


Q ss_pred             CCCCcccccCCcceEEecC---CCHHHHHHHHHcccEEEeCCC--------eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          401 SGKDWSFILRQIGMFSFTG---LNKAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       401 ~~~~~~~~~~~~g~f~~~~---l~~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                          +.+.++.+ .|+|+.   .+.+.+.+.+.++||.+.+++        ||+++  +++++++++++|+++.+.
T Consensus       286 ----~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~--~~~e~~~l~~al~~~~~~  354 (360)
T 3hdo_A          286 ----YDVIPSQG-NYLFATPPDRDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG--TREEMEQTLAALKEIGEG  354 (360)
T ss_dssp             ----CEECCCSS-SEEEEECTTCCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC--CHHHHHHHHHHHHHHHC-
T ss_pred             ----CEEcCCCc-cEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHhcc
Confidence                46655554 466653   345554444556799998862        99998  579999999999988653

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=100.00  E-value=2.9e-38  Score=316.96  Aligned_cols=324  Identities=14%  Similarity=0.106  Sum_probs=240.3

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHH--hc-CCCCcCCCCcch-----HHHHHHHHHHHhCCCCccccc-Cc
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML--ER-GENKEYLPIEGL-----AAFNKVTAELLFGADNSVLKE-QR  151 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~--~~-~~~~~Y~~~~G~-----~~lr~aia~~l~~~~~~~~~~-~~  151 (467)
                      .++++|||+.|.|    .++. ++.+.+++.+..  .. .....|.+..|.     ++||+++|+++. .+|..+++ ++
T Consensus        20 ~~~~~i~l~~g~p----~~~~-~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~   93 (391)
T 3bwn_A           20 MSDFVVNLDHGDP----TAYE-EYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRY   93 (391)
T ss_dssp             TTTSCEECSSCCC----GGGH-HHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSE
T ss_pred             CCCCeeEcCCCCC----CCCC-CHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCe
Confidence            3457899999988    4443 566666653322  11 123679999998     999999999986 45677766 58


Q ss_pred             eeeeecCCchhHHHHHHHHHHHhCCCC----EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC
Q 012238          152 VATVQGLSGTGSLRLAAALIERYFPGA----KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP  227 (467)
Q Consensus       152 i~~~~t~ggt~al~l~~~~l~~~~~gd----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~  227 (467)
                      |++  |+|+++++.++  +...+.+||    +|++++|+|..|...++..|++++.++++.+   +++        .   
T Consensus        94 i~~--t~G~~~al~~~--~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~---~l~--------~---  155 (391)
T 3bwn_A           94 IVV--GTGSTQLCQAA--VHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAW---GFD--------K---  155 (391)
T ss_dssp             EEE--EEHHHHHHHHH--HHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEEST---TCC--------C---
T ss_pred             EEE--eCChHHHHHHH--HHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCHH---HcC--------C---
Confidence            999  99999999998  344467999    9999999999999999999999999988532   122        1   


Q ss_pred             CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       228 ~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      ++++++++++||||||.+++     +|++.+.+++++||+||+|.+   +.  ..  ++   ....+++|+++||||.||
T Consensus       156 ~~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~---~~--~~--~l---~~~~~~~i~~~S~SK~~g  220 (391)
T 3bwn_A          156 KGPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW---PH--YT--PI---TRRQDHDIMLFTFSKITG  220 (391)
T ss_dssp             CSCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS---TT--TS--CC---CCCBCCSEEEEEHHHHHS
T ss_pred             CCCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC---CC--CC--cc---ccCCCCeEEEEechhhcC
Confidence            46778888999999999997     354422223399999999973   11  01  11   113468999999999999


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHH-------HHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEW-------KAEMEMM  380 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-------~~~l~~~  380 (467)
                      ++|+|+||++  ++++++++.            +.........+++.+.|.++..+|++..   .|       .++++++
T Consensus       221 ~~GlRiG~~~--~~~~~l~~~------------l~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~~~~~  283 (391)
T 3bwn_A          221 HAGSRIGWAL--VKDKEVAKK------------MVEYIIVNSIGVSKESQVRTAKILNVLK---ETCKSESESENFFKYG  283 (391)
T ss_dssp             CGGGCEEEEE--ECCHHHHHH------------HHHHHHHHHSSCCHHHHHHHHHHHHHHH---HHTTCCCTTTSHHHHH
T ss_pred             CCccceEEEE--ecCHHHHHH------------HHHHhcccccCCCHHHHHHHHHHHhCcc---hhccccccHHHHHHHH
Confidence            9999999996  358888877            5554443456788899999988886542   11       3457889


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCccccc-------------CCcceEEecCCC-HHHHHHHHHcccEEEeCC-------
Q 012238          381 AGRIKNVRQKLFDSLSAKDKSGKDWSFIL-------------RQIGMFSFTGLN-KAQSDNMTNKWHVYMTKD-------  439 (467)
Q Consensus       381 ~~~~~~~r~~l~~~l~~~~g~~~~~~~~~-------------~~~g~f~~~~l~-~~~~~~ll~~~gI~v~~g-------  439 (467)
                      ++.++++|+.+.+.|+ +++   .+.+..             +++|+|+|+++. .+++.++++++||.+.||       
T Consensus       284 ~~~~~~~~~~l~~~L~-~~~---~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~  359 (391)
T 3bwn_A          284 REMMKNRWEKLREVVK-ESD---AFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRHKVMSRAGERCGSDK  359 (391)
T ss_dssp             HHHHHHHHHHHHHHHH-TCS---SEECCCCCCEEETTTTEEECCCCSEEEEEESSSCCHHHHHHHTTEECEEGGGGTCCT
T ss_pred             HHHHHHHHHHHHHHHH-hCC---CcccccCCccccccccccCCCcceEEEecCCcHHHHHHHHHHCCEEEccCCCCCCCC
Confidence            9999999999999999 762   133332             456678998764 345677777789999986       


Q ss_pred             C--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          440 G--RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       440 g--Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                      +  |||++. +++++++++++|++++++
T Consensus       360 ~~iRis~~~-~~e~i~~~~~~L~~~~~~  386 (391)
T 3bwn_A          360 KHVRVSMLS-REDVFNVFLERLANMKLI  386 (391)
T ss_dssp             TEEEEESCS-CHHHHHHHHHHHHSCC--
T ss_pred             CEEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence            2  999998 889999999999887653

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=100.00  E-value=3.1e-36  Score=295.73  Aligned_cols=309  Identities=16%  Similarity=0.166  Sum_probs=238.2

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      ++.|+|+.|.+    ..+. ++.+.+++.+.+.......| +..+.+++|+++++++...   .+++++|++  |+|+++
T Consensus        19 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~y-~~~~~~~lr~~la~~~~~~---~~~~~~v~~--~~G~~~   87 (335)
T 1uu1_A           19 RDKTYLALNEN----PFPF-PEDLVDEVFRRLNSDALRIY-YDSPDEELIEKILSYLDTD---FLSKNNVSV--GNGADE   87 (335)
T ss_dssp             CCSEEESSCCC----SSCC-CHHHHHHHHHTCCGGGGGSC-CCSSCHHHHHHHHHHHTCS---SCCGGGEEE--ESSHHH
T ss_pred             CcceECCCCCC----CCCC-CHHHHHHHHHHhhhhhhhcC-CCCchHHHHHHHHHHcCCC---CCCHHHEEE--cCChHH
Confidence            36899999987    4443 78899999887632223567 4457999999999998643   344789999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      ++.++   +..+  ||+|+++ |+|..+...++..|++++.+|++  +++++|++.+        ++++++++++|||||
T Consensus        88 al~~~---~~~~--gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l--------~~~~~v~l~~p~npt  151 (335)
T 1uu1_A           88 IIYVM---MLMF--DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLT--KDLRIPEVNV--------GEGDVVFIPNPNNPT  151 (335)
T ss_dssp             HHHHH---HHHS--SEEEECS-SSCHHHHHHHHHHTCEEEECCCC--TTSCCCCCCC--------CTTEEEEEESSCTTT
T ss_pred             HHHHH---HHHh--CCcEEEC-CCcHHHHHHHHHcCCeEEEeccC--CCCCCCHHHc--------CCCCEEEEeCCCCCC
Confidence            99997   3334  8999999 99999999999999999999883  3567888887        256788889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (467)
                      |.+++.+++++|++.|   | ++|+||+|.++..+    ...   .+.+..++++++.||||.+|++|+|+||++   .+
T Consensus       152 G~~~~~~~l~~l~~~~---~-~li~De~~~~~~~~----~~~---~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~---~~  217 (335)
T 1uu1_A          152 GHVFEREEIERILKTG---A-FVALDEAYYEFHGE----SYV---DFLKKYENLAVIRTFSKAFSLAAQRVGYVV---AS  217 (335)
T ss_dssp             CCCCCHHHHHHHHHTT---C-EEEEECTTHHHHCC----CCG---GGGGTCSSEEEEEESTTTTTCGGGCCEEEE---EC
T ss_pred             CCCCCHHHHHHHHHhC---C-EEEEECcchhhcch----hHH---HHhhhCCCEEEEecchhhcCCcccCeEEEE---eC
Confidence            9999999999998777   7 89999999877642    111   112345678999999999999999999996   57


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238          323 SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  402 (467)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~  402 (467)
                      +++++.            +......  .+++.++|.++..+|++.       +++++.+++++++++++.+.|+ ++|  
T Consensus       218 ~~~~~~------------l~~~~~~--~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~-~~g--  273 (335)
T 1uu1_A          218 EKFIDA------------YNRVRLP--FNVSYVSQMFAKVALDHR-------EIFEERTKFIVEERERMKSALR-EMG--  273 (335)
T ss_dssp             HHHHHH------------HHHHSCT--TCSCHHHHHHHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHH-HHT--
T ss_pred             HHHHHH------------HHHhcCC--CCcCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHH-HCC--
Confidence            887777            5554433  367788888888888653       2356778889999999999998 776  


Q ss_pred             CCcccccCCcceEEecCCC---H-HHHHHHHHcccEEEeCCC---eEEeccCChhhHHHHHHHHHHH
Q 012238          403 KDWSFILRQIGMFSFTGLN---K-AQSDNMTNKWHVYMTKDG---RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       403 ~~~~~~~~~~g~f~~~~l~---~-~~~~~ll~~~gI~v~~gg---Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                        +.+. +.+++|+|+.+.   . ++.+.+++ +||.+.++.   |||++.  ++++++++++|+++
T Consensus       274 --~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~iRis~~~--~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          274 --YRIT-DSRGNFVFVFMEKEEKERLLEHLRT-KNVAVRSFREGVRITIGK--REENDMILRELEVF  334 (335)
T ss_dssp             --CCBC-CCCSSEEEEECCTHHHHHHHHHHHH-HTEEEEEETTEEEEECCC--HHHHHHHHHHHHCC
T ss_pred             --cEEc-CCCCeEEEEECCCCCHHHHHHHHHH-CCEEEEECCCeEEEEeCC--HHHHHHHHHHHHhh
Confidence              4444 445678888663   2 34555554 699998753   999975  57899999988764

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=100.00  E-value=7.3e-37  Score=310.08  Aligned_cols=327  Identities=12%  Similarity=0.061  Sum_probs=248.3

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHh-cCC-CCcCCCCc-c---hHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE-RGE-NKEYLPIE-G---LAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~-~~~-~~~Y~~~~-G---~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      ..+|+|+.|+|    .+++ ++.+++++.+.+. .+. ...|.+.. |   .++||+++|+++...++..+++++|++  
T Consensus        56 ~~~i~l~~g~~----~~~~-~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~--  128 (427)
T 2hox_A           56 GCSADVASGDG----LFLE-EYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVF--  128 (427)
T ss_dssp             TCCEECCSCCC----GGGH-HHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEE--
T ss_pred             CceEEecCcCC----CCCC-CHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEE--
Confidence            36899999988    4443 6788888887763 222 13498888 9   999999999999766566677899999  


Q ss_pred             cCCchhHHHHHHHHHHH--------hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCC
Q 012238          157 GLSGTGSLRLAAALIER--------YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~--------~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~  228 (467)
                      |+|+++++.++  +...        +.|||+|+++.|+|..|...++..|++++.+.        +|++.+++.++   +
T Consensus       129 t~G~~~al~~~--~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~--------~d~~~l~~~~~---~  195 (427)
T 2hox_A          129 GVGVTQLIHGL--VISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWA--------GNAANYVNVSN---P  195 (427)
T ss_dssp             ESHHHHHHHHH--HHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEE--------EEGGGGTTCSC---G
T ss_pred             eCCHHHHHHHH--HHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeeeec--------CCHHHHHHhhc---C
Confidence            99999999998  4445        67999999999999999999999999987543        56778877665   4


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc
Q 012238          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (467)
                      +++++++++||||||.+++ +.       ++  ++..|.|++|.+    .. .   ++..+ . .+++|+++||||.+|+
T Consensus       196 ~~k~v~l~~p~NPtG~~~~-~~-------l~--~~~~i~d~~~~~----~~-~---s~~~~-~-~~~~i~~~S~SK~~g~  255 (427)
T 2hox_A          196 EQYIEMVTSPNNPEGLLRH-AV-------IK--GCKSIYDMVYYW----PH-Y---TPIKY-K-ADEDILLFTMSKFTGH  255 (427)
T ss_dssp             GGEEEEEESSCTTTCCCCC-CS-------ST--TCEEEEECTTCS----TT-T---SCCCS-C-BCCSEEEEEHHHHTSC
T ss_pred             CceEEEEcCCCCCcccccH-HH-------Hc--CCCEEEeecccC----CC-C---Ccccc-C-CCceEEEEeChhcCCC
Confidence            6788899999999999999 42       22  566788887643    10 0   11011 1 4689999999999999


Q ss_pred             CCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChh-hHH----HHHHHHHHHHHH
Q 012238          309 YAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPA-LFD----EWKAEMEMMAGR  383 (467)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~----~~~~~l~~~~~~  383 (467)
                      +|+|+||++  +.++++++.            +.+.......+++.+.|.++..+|.+.. +.+    .+++++++.+++
T Consensus       256 ~G~RiG~~~--~~~~~l~~~------------l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~  321 (427)
T 2hox_A          256 SGSRFGWAL--IKDESVYNN------------LLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKK  321 (427)
T ss_dssp             GGGCCEEEE--ECCHHHHHH------------HHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHH
T ss_pred             CCceEEEEE--ECCHHHHHH------------HHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHH
Confidence            999999996  346888887            5555554456788899998888886531 100    123457788899


Q ss_pred             HHHHHHHHHHHhhhcc-CC-------CC---CcccccCCcceEEecCCC---HHHHHHHHHcccEEEeCC-------C--
Q 012238          384 IKNVRQKLFDSLSAKD-KS-------GK---DWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKD-------G--  440 (467)
Q Consensus       384 ~~~~r~~l~~~l~~~~-g~-------~~---~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~g-------g--  440 (467)
                      ++++++.+.+.|+ ++ |+       |.   .+++..|++|+|+|+++.   .++++++++++||.+.||       +  
T Consensus       322 ~~~~~~~l~~~L~-~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~  400 (427)
T 2hox_A          322 LRERWVNITALLD-QSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYV  400 (427)
T ss_dssp             HHHHHHHHHHHHT-TSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEE
T ss_pred             HHHHHHHHHHHHH-hCcCccccccccccccccccccCCCCceEEEEECCCcHHHHHHHHHHHCCEEEcCCCccCCCCCEE
Confidence            9999999999998 76 32       11   034456788999998764   345778887789999986       2  


Q ss_pred             eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          441 RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       441 Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                      |||++. +++++++++++|++++++
T Consensus       401 Ris~~~-~~e~l~~~l~~l~~~~~~  424 (427)
T 2hox_A          401 RLSLIK-TQDDFDQLMYYLKDMVKA  424 (427)
T ss_dssp             EEECSS-CHHHHHHHHHHHHHHHTC
T ss_pred             EEEecC-CHHHHHHHHHHHHHHHhh
Confidence            999998 889999999999998753

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=100.00  E-value=1.8e-34  Score=284.75  Aligned_cols=312  Identities=13%  Similarity=0.124  Sum_probs=235.6

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      +++|||+.|.+    ..++ ++.+.+++.+.+..  ...|++..+ +++|+++|+++..      ++++|++  |+|+++
T Consensus        15 ~~~id~~~~~~----~~~~-~~~v~~a~~~~~~~--~~~y~~~~~-~~lr~~la~~~~~------~~~~i~~--t~g~~~   78 (350)
T 3fkd_A           15 SEIVNFSTTVW----TDGD-KDHLEKHLVENLNC--IRHYPEPDA-GTLRQMLAKRNSV------DNNAILV--TNGPTA   78 (350)
T ss_dssp             -CCEECSCCSC----CCSC-CHHHHHHHHHTGGG--GGSCCCTTC-HHHHHHHHHHTTC------CGGGEEE--ESHHHH
T ss_pred             ccEEEccCCCC----CCCC-CHHHHHHHHHhHhH--HhcCCCCcH-HHHHHHHHHHhCc------CHHHEEE--cCCHHH
Confidence            58999999987    4554 78899998887732  367866666 8999999999642      3789999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeee-ecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRY-YDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~-~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      ++.++   +..+. ||+|+++.|+|..+...++..|++++.+++ ++.  .++++           ++++++++++||||
T Consensus        79 al~~~---~~~l~-gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~~-----------~~~~~v~i~~p~np  141 (350)
T 3fkd_A           79 AFYQI---AQAFR-GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDI--GEADF-----------SNMDFCWLCNPNNP  141 (350)
T ss_dssp             HHHHH---HHHTT-TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCG--GGSCC-----------TTCSEEEEESSCTT
T ss_pred             HHHHH---HHHHC-CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCcc--ccCcc-----------CCCCEEEEeCCCCC
Confidence            99997   33344 999999999999999999999999999998 422  23443           34567788999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.+++.+|++.|+++  +||+||+|.++.++... ..    ...+..+++++++||||.++++|+|+||++   .
T Consensus       142 tG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~-~~----~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~---~  211 (350)
T 3fkd_A          142 DGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVI-RP----ADIKGRKNLVMVYSFSHAYGIPGLRIGYIV---A  211 (350)
T ss_dssp             TCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCC-CG----GGGTTCSSEEEEEESHHHHSCGGGCCEEEE---C
T ss_pred             cCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcch-hh----HHhhcCCCEEEEecCchhccCcchheEeEE---e
Confidence            99999999999998888765  99999999998865321 11    223445789999999999999999999996   6


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +.....  ..+++.+++.++..+|++..   .|   .+..++.. ++++.+.+.|+ +++ 
T Consensus       212 ~~~~~~~------------~~~~~~--~~~~~~~~~~~~~~~l~~~~---~~---~~~~~~~~-~~~~~l~~~L~-~~~-  268 (350)
T 3fkd_A          212 NKDFMKR------------VAAFST--PWAVNALAIEAAKFILIHPA---QF---TLPIRKWQ-RNTVDFITALN-RLD-  268 (350)
T ss_dssp             CHHHHHH------------HHTTCC--TTCSCHHHHHHHHHHHHCTT---TT---CCCHHHHH-HHHHHHHHHHH-HST-
T ss_pred             CHHHHHH------------HHHhCC--CCCCCHHHHHHHHHHHhCHH---HH---HHHHHHHH-HHHHHHHHHHh-cCC-
Confidence            8888877            665544  34677888888888887653   11   12233333 77888999998 762 


Q ss_pred             CCCcccccCCcceEEecCC---CH-HHHHHHHHcccEEEeCCC----------eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          402 GKDWSFILRQIGMFSFTGL---NK-AQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l---~~-~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                        .+.+.++.++ |+|+.+   +. ++.+.|++++||.+.+|.          |||++  +++++++++++|++++++
T Consensus       269 --~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~~~  341 (350)
T 3fkd_A          269 --GVEVHPSGTT-FFLLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ--RPAQNQLFIKALETFLEK  341 (350)
T ss_dssp             --TEEECCCSSS-EEEEEESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHTC
T ss_pred             --CcEECCCCCc-EEEEECCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHH
Confidence              1566555554 555533   33 456666665799999861          99987  568899999999998765

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=100.00  E-value=2.9e-32  Score=273.76  Aligned_cols=327  Identities=12%  Similarity=0.037  Sum_probs=237.3

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      ++.|||+.|.|.   +.+ .++.+.+++.+.+...  ....|.+..|..++++++++++....|    .+++++  |+||
T Consensus        43 ~~~idl~~~~~~---~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g----~~~v~~--~~gg  112 (398)
T 3a2b_A           43 RRVLMFGSNSYL---GLT-TDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG----KEAAIL--FSTG  112 (398)
T ss_dssp             EEEEECSCSCTT---CGG-GCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT----CSEEEE--ESSH
T ss_pred             ceEEEeeccccc---CCC-CCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhC----CCcEEE--ECCH
Confidence            478999999761   332 3778888888876431  123455566777777777777654433    257888  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCC-CcEEEEeCCCC
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG-GSFILLHGCAH  239 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~-~~~~i~i~~p~  239 (467)
                      ++++.++  +...+.+||.|+++.|+|..+...++..|++++.++.       +|++.+++.+++..+ +++++++++|+
T Consensus       113 t~a~~~~--~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~~~~~  183 (398)
T 3a2b_A          113 FQSNLGP--LSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPEDSAKLICTDGIF  183 (398)
T ss_dssp             HHHHHHH--HHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESBC
T ss_pred             HHHHHHH--HHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhccCCceEEEEeCCC
Confidence            9999997  4444679999999999999999999999999988875       689999999985322 67899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe-EEEEecCccCcccCCCccceEEE
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME-LLVAQSYSKNLGLYAERIGAMNV  318 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~~~~G~RiG~~~~  318 (467)
                      ||||.+++   +++|+++|++||+++|+||+|..+.++.   ...++.......++ +++++||||.++++|   ||++ 
T Consensus       184 nptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~-  253 (398)
T 3a2b_A          184 SMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGH---KGAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVA-  253 (398)
T ss_dssp             TTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSG---GGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEE-
T ss_pred             CCCCCccC---HHHHHHHHHHcCcEEEEECCCcccccCC---CCCchHhhcCCCcCCeEEEecccccccCCC---cEEE-
Confidence            99999988   5678888999999999999998876642   11112122222234 699999999999888   9985 


Q ss_pred             ecCCHHHHhhhhhhhHHHHHHHHHhhc-cCccCCCchHHHH-HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          319 VCSSSDLAARCCEVAVIQVKSQLKRLA-RPMYSNPPVHGAR-IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                        .++++++.            +.... .....+.+...|. ++..+|+.      + +++++.+++++++++.+.+.|+
T Consensus       254 --~~~~~~~~------------l~~~~~~~~~~~~~~~~~~a~~~~~l~~------~-~~~~~~~~~~~~~~~~l~~~L~  312 (398)
T 3a2b_A          254 --GDADVIDF------------LKHNARSVMFSASMTPASVASTLKALEI------I-QNEPEHIEKLWKNTDYAKAQLL  312 (398)
T ss_dssp             --ECHHHHHH------------HHHHCHHHHSSBCCCHHHHHHHHHHHHH------H-HHCTHHHHHHHHHHHHHHHHHH
T ss_pred             --eCHHHHHH------------HHHhcccceecCCCCHHHHHHHHHHHHH------H-hhCHHHHHHHHHHHHHHHHHHH
Confidence              67777776            44321 1122333444454 33444432      1 2356788999999999999999


Q ss_pred             hccCCCCCcccccCCcceEEecCCC-----HHHHHHHHHcccEEEeCC---------C--eEEecc-CChhhHHHHHHHH
Q 012238          397 AKDKSGKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD---------G--RISLAG-LSLAKCEYLADAI  459 (467)
Q Consensus       397 ~~~g~~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g---------g--Ris~~~-~~~~~i~~~~~~l  459 (467)
                       ++|    +++..+. |+|+|+.+.     .++.++++++ ||.+.++         +  ||+++. .+++++++++++|
T Consensus       313 -~~g----~~~~~~~-g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l  385 (398)
T 3a2b_A          313 -DHG----FDLGATE-SPILPIFIRSNEKTFWVTKMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKM  385 (398)
T ss_dssp             -HTT----CCBCSCC-SSEEEEECCCHHHHHHHHHHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHH
T ss_pred             -hcC----CCcCCCC-CCEEEEEcCCHHHHHHHHHHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHH
Confidence             776    4566665 567777553     2345666665 9999886         2  999985 4889999999999


Q ss_pred             HHHHHhc
Q 012238          460 IDSYHNV  466 (467)
Q Consensus       460 ~~~l~~~  466 (467)
                      +++++++
T Consensus       386 ~~~l~~~  392 (398)
T 3a2b_A          386 VKVFKQA  392 (398)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9998764

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=100.00  E-value=1.2e-30  Score=263.19  Aligned_cols=324  Identities=12%  Similarity=0.086  Sum_probs=236.4

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC------CCCcCCC--CcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG------ENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~------~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (467)
                      +.|+|+.|.+    + + .++.+.+++.+.+...      ....|.+  ..+..++|+++++++...     +++++++ 
T Consensus        28 ~~i~l~~~~~----~-~-~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~-----~~~~v~~-   95 (420)
T 1t3i_A           28 PLVYLDNAAT----S-Q-KPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINAR-----SPREIVY-   95 (420)
T ss_dssp             ECEECBTTTC----C-C-CCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCS-----CGGGEEE-
T ss_pred             ceEEecCCcc----C-C-CCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCC-----CCCeEEE-
Confidence            5899999987    4 3 3788889988877531      1234543  478899999999997542     2678998 


Q ss_pred             ecCCchhHHHHHHHHHHH----hCCCCEEEEcCCCCcc----hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC
Q 012238          156 QGLSGTGSLRLAAALIER----YFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP  227 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~~----~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~  227 (467)
                       |+||++++.++  +...    +.+||+|+++.|+|..    +...++..|++++.++.+  .++.+|++.+++.++   
T Consensus        96 -~~g~t~a~~~~--~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~---  167 (420)
T 1t3i_A           96 -TRNATEAINLV--AYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD--EQESFDLEHFKTLLS---  167 (420)
T ss_dssp             -ESSHHHHHHHH--HHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC--TTSSBCHHHHHHHCC---
T ss_pred             -cCChHHHHHHH--HHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccC--CCCCcCHHHHHHhhC---
Confidence             99999999998  3333    5799999999999988    567777889999999984  456799999999987   


Q ss_pred             CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       228 ~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      ++++++++++|+||||.+++   +++|.++|+++|+++|+|++|......   .+   +..+    ..++++.|+||.+|
T Consensus       168 ~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~---~~---~~~~----~~di~~~s~sK~~~  234 (420)
T 1t3i_A          168 EKTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHYP---LD---VQLI----DCDWLVASGHKMCA  234 (420)
T ss_dssp             TTEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC---CC---HHHH----TCSEEEEEGGGTTS
T ss_pred             CCceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCcc---Cc---hhhc----CCCEEEEehhhhcC
Confidence            57789999999999999999   567888899999999999998754321   11   1111    35688999999999


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC--------------------ccCCCchHHHHHHHH-HhCC
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP--------------------MYSNPPVHGARIVAN-VVGN  366 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~~~~~~~~~-~L~~  366 (467)
                      ++|  +||++   .++++++.            +......                    ...+.+.+.+.++.. ++..
T Consensus       235 ~~g--~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~  297 (420)
T 1t3i_A          235 PTG--IGFLY---GKEEILEA------------MPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDY  297 (420)
T ss_dssp             CTT--CEEEE---ECHHHHHH------------SCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHH
T ss_pred             CCc--eEEEE---EchHHHhh------------cCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHH
Confidence            888  89995   66777665            4433211                    112344555554432 2211


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC------cceEEec--CCCHHHHHHHHHcccEEEeC
Q 012238          367 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ------IGMFSFT--GLNKAQSDNMTNKWHVYMTK  438 (467)
Q Consensus       367 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~------~g~f~~~--~l~~~~~~~ll~~~gI~v~~  438 (467)
                        + +  ...++++.++++++++++.+.|+ ++.   ++++..+.      ++++.|.  +.+.+.+.+.++++||.+.+
T Consensus       298 --~-~--~~~~~~~~~~~~~~~~~l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~  368 (420)
T 1t3i_A          298 --L-T--DLGMENIHNYEVELTHYLWQGLG-QIP---QLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRS  368 (420)
T ss_dssp             --H-H--HHCHHHHHHHHHHHHHHHHHHHH-TCT---TEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBC
T ss_pred             --H-H--HhHHHHHHHHHHHHHHHHHHHHH-hCC---CeEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEee
Confidence              1 0  11256788889999999999998 762   15665553      6666553  23444455566667999988


Q ss_pred             C-------------C---eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          439 D-------------G---RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       439 g-------------g---Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                      |             .   ||+++. .+++++++++++|+++++.+
T Consensus       369 ~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~  413 (420)
T 1t3i_A          369 GHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF  413 (420)
T ss_dssp             SCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             ccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence            6             2   999885 37899999999999998765

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.97  E-value=1.3e-30  Score=259.75  Aligned_cols=315  Identities=13%  Similarity=0.076  Sum_probs=223.5

Q ss_pred             CCCCchHHHHHHHHHHHhcCC-------CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHH
Q 012238           98 LQPYVLDVVKKAENLMLERGE-------NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAAL  170 (467)
Q Consensus        98 ~~p~~~~~v~~a~~~~~~~~~-------~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~  170 (467)
                      ..+++++.+.+++.+.+....       ...|.+..+..++|+++++++..      ++++|++  |+||++++.++...
T Consensus         9 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~--~~g~t~a~~~~~~~   80 (384)
T 1eg5_A            9 ATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGV------SPSEIFF--TSCATESINWILKT   80 (384)
T ss_dssp             TCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTS------CGGGEEE--ESCHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCC------CCCeEEE--ECCHHHHHHHHHHh
Confidence            334458899999988875421       01133456789999999999742      2678988  99999999998433


Q ss_pred             HHH--hCCCCEEEEcCCCCcchHHHH---hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCC
Q 012238          171 IER--YFPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGID  245 (467)
Q Consensus       171 l~~--~~~gd~Vlv~~P~y~~~~~~~---~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~  245 (467)
                      +..  ..+||+|+++.|+|+.+...+   +..|++++.++.+  .++.+|++.+++.++   ++++++++++|+||||.+
T Consensus        81 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~  155 (384)
T 1eg5_A           81 VAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD--SRGVVKLEELEKLVD---EDTFLVSIMAANNEVGTI  155 (384)
T ss_dssp             HHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC--TTSCBCHHHHHHHCC---TTEEEEEEESBCTTTCBB
T ss_pred             hhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccC--CCCccCHHHHHHHhC---CCCeEEEEECCCCCcccc
Confidence            211  168999999999999876655   7789999999884  356799999999987   477889999999999999


Q ss_pred             CCHHHHHHHHHHHHhcC--CeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCH
Q 012238          246 PTPEQWEKIADVIQEKN--HIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (467)
Q Consensus       246 ~~~~~l~~l~~~~~~~~--~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~  323 (467)
                      ++.   ++|.++|+++|  ++||+||+|. +..  ...+   +    .....++++.|+||.+|++|  +||++   .++
T Consensus       156 ~~~---~~i~~l~~~~~~~~~li~Dea~~-~~~--~~~~---~----~~~~~di~~~s~sK~~g~~G--~G~~~---~~~  217 (384)
T 1eg5_A          156 QPV---EDVTRIVKKKNKETLVHVDAVQT-IGK--IPFS---L----EKLEVDYASFSAHKFHGPKG--VGITY---IRK  217 (384)
T ss_dssp             CCH---HHHHHHHHHHCTTCEEEEECTTT-TTT--SCCC---C----TTTCCSEEEEEGGGGTSCTT--CEEEE---ECT
T ss_pred             cCH---HHHHHHHHhcCCceEEEEEhhhh-cCC--cccC---c----hhcCCCEEEecHHHhcCCCc--eEEEE---EcC
Confidence            995   57777799999  9999999986 221  1111   1    11135688999999999888  79996   444


Q ss_pred             HH--HhhhhhhhHHHHHHHHHhh---ccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012238          324 DL--AARCCEVAVIQVKSQLKRL---ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK  398 (467)
Q Consensus       324 ~~--~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~  398 (467)
                      ++  ...            +...   ......+++...+.++..+|+.      +.+++++.+++++++++++.+.|+ +
T Consensus       218 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~~~~~~~~~~~~~~~l~~~L~-~  278 (384)
T 1eg5_A          218 GVPIRPL------------IHGGGQERGLRSGTQNVPGIVGAARAMEI------AVEELSEAAKHMEKLRSKLVSGLM-N  278 (384)
T ss_dssp             TSCCCCS------------BCSSCTTTTTBCSCCCHHHHHHHHHHHHH------HHHTHHHHHHHHHHHHHHHHHHHH-T
T ss_pred             CCccccc------------cccCcccccccCCCCChHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHhC-C
Confidence            43  222            1111   0112345677777776666643      123467888999999999999998 6


Q ss_pred             cCCCCCcccccCC----cc--eEEecCCCHHHHHHHHHcccEEEeCC-------------------------C--eEEec
Q 012238          399 DKSGKDWSFILRQ----IG--MFSFTGLNKAQSDNMTNKWHVYMTKD-------------------------G--RISLA  445 (467)
Q Consensus       399 ~g~~~~~~~~~~~----~g--~f~~~~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ris~~  445 (467)
                      .|    +++..+.    ..  .|.+.+.+.+.+.+.+.++||.+.+|                         +  ||+++
T Consensus       279 ~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~  354 (384)
T 1eg5_A          279 LG----AHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLC  354 (384)
T ss_dssp             TT----CEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECC
T ss_pred             CC----eEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECC
Confidence            55    4554432    11  22233445554444445679999873                         2  99988


Q ss_pred             c-CChhhHHHHHHHHHHHHHhc
Q 012238          446 G-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       446 ~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                      . .+++++++++++|+++++++
T Consensus       355 ~~~~~~~i~~~~~~l~~~~~~~  376 (384)
T 1eg5_A          355 KYNTEEEVDYFLKKIEEILSFL  376 (384)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Confidence            3 37899999999999998765

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.97  E-value=2.7e-30  Score=259.42  Aligned_cols=325  Identities=13%  Similarity=0.077  Sum_probs=234.9

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--CC------cCCCCcchHHHHHHHHHHHhCCCCcccccCceee
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NK------EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--~~------~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      ++.++|..|.+    + + .++.+.+++.+.+....  ..      .|.+..+..++|+++++++...     ++++|++
T Consensus        22 ~~~i~l~~~~~----~-~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-----~~~~v~~   90 (406)
T 1kmj_A           22 LPLAYLDSAAS----A-Q-KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINAR-----SAEELVF   90 (406)
T ss_dssp             EECEECCTTTC----C-C-CCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCS-----CGGGEEE
T ss_pred             CceEEecCCcc----C-C-CCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCC-----CCCeEEE
Confidence            35899998877    3 3 37788999888875421  11      1235678899999999997542     2678999


Q ss_pred             eecCCchhHHHHHHHHHHH----hCCCCEEEEcCCCCcc----hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC
Q 012238          155 VQGLSGTGSLRLAAALIER----YFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA  226 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~----~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~  226 (467)
                        |+|+++++.++  +...    +.+||+|+++.|+|..    |...++..|++++.++.+  .++.+|++.+++.++  
T Consensus        91 --~~g~t~a~~~~--~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~l~--  162 (406)
T 1kmj_A           91 --VRGTTEGINLV--ANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLN--PDGTLQLETLPTLFD--  162 (406)
T ss_dssp             --ESSHHHHHHHH--HHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBC--TTSCBCGGGHHHHCC--
T ss_pred             --eCChhHHHHHH--HHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecC--CCCCcCHHHHHHHhc--
Confidence              99999999998  3333    5799999999999864    344567789999999884  356799999999987  


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc
Q 012238          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (467)
Q Consensus       227 ~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (467)
                       ++++++++++|+||||.+++   +++|+++|++||+++|+||+|......   .+   +..    ...++++.|+||.+
T Consensus       163 -~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~~---~~---~~~----~~~d~~~~s~~K~~  228 (406)
T 1kmj_A          163 -EKTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHHP---VD---VQA----LDCDFYVFSGHKLY  228 (406)
T ss_dssp             -TTEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC---CC---HHH----HTCSEEEEEGGGTT
T ss_pred             -cCCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCCC---Cc---ccc----cCCCEEEEEchhcc
Confidence             57789999999999999999   668888899999999999998754321   11   111    13578899999999


Q ss_pred             ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC---------------------ccCCCchHHHHHHH-HHh
Q 012238          307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP---------------------MYSNPPVHGARIVA-NVV  364 (467)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------~~~~~~~~~~~~~~-~~L  364 (467)
                      |++|  +||++   .++++++.            +......                     ...+.+.+.+.++. .++
T Consensus       229 g~~G--~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al  291 (406)
T 1kmj_A          229 GPTG--IGILY---VKEALLQE------------MPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAAL  291 (406)
T ss_dssp             SCTT--CEEEE---ECHHHHHH------------CCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHH
T ss_pred             CCCC--cEEEE---EeHHHHhh------------cCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHH
Confidence            9888  89996   56777665            4332210                     11233445555443 233


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccC--CcceEEec--CCCHHHHHHHHHcccEEEeCC-
Q 012238          365 GNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR--QIGMFSFT--GLNKAQSDNMTNKWHVYMTKD-  439 (467)
Q Consensus       365 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~--~~g~f~~~--~l~~~~~~~ll~~~gI~v~~g-  439 (467)
                      +.  +.   ...+++.+++++++++++.+.|+ ++.   ++++..+  .++++.|.  +.+.+.+.+.+.++||.+.+| 
T Consensus       292 ~~--~~---~~~~~~~~~~~~~~~~~l~~~L~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~  362 (406)
T 1kmj_A          292 EY--VS---ALGLNNIAEYEQNLMHYALSQLE-SVP---DLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGH  362 (406)
T ss_dssp             HH--HH---HHCHHHHHHHHHHHHHHHHHHHT-TST---TEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEEC
T ss_pred             HH--HH---HcCHHHHHHHHHHHHHHHHHHHh-cCC---CeEEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEecc
Confidence            21  11   12356788889999999999998 762   1566666  78877664  334544445556679998753 


Q ss_pred             -------------C--eEEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238          440 -------------G--RISLAGL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 -------------g--Ris~~~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                                   +  ||+++.. +++++++++++|+++++.+
T Consensus       363 ~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l  405 (406)
T 1kmj_A          363 HCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL  405 (406)
T ss_dssp             TTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence                         3  9998864 7899999999999998765

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.97  E-value=2.9e-30  Score=258.88  Aligned_cols=326  Identities=12%  Similarity=0.073  Sum_probs=229.8

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-C-----CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-G-----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~-----~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (467)
                      +.+.|||+.|.|.   +. ..++.+.+++.+.+.. +     ....|....+..++|+.+++++..       ++.+++ 
T Consensus        42 g~~~id~~~~~~~---g~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~-------~~~i~~-  109 (399)
T 3tqx_A           42 EKEVLNFCANNYL---GL-ADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGT-------DDTILY-  109 (399)
T ss_dssp             TEEEEECSSCCTT---SC-TTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTC-------SEEEEE-
T ss_pred             CeeEEEeeccCcc---cc-cCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCC-------CcEEEE-
Confidence            3478999999652   22 2367788887776643 1     111233455689999999999742       335555 


Q ss_pred             ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCC---CcEE
Q 012238          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG---GSFI  232 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~---~~~~  232 (467)
                        .+|++++.++  +...+.+||.|+++.|+|..+...++..|++++.++.       +|++.+++.+++...   ++++
T Consensus       110 --~sGt~a~~~~--l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~  178 (399)
T 3tqx_A          110 --SSCFDANGGL--FETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKL  178 (399)
T ss_dssp             --SCHHHHHHTT--HHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEE
T ss_pred             --CchHHHHHHH--HHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceE
Confidence              4568888886  4445679999999999999999999999999988875       577888888875322   7889


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEecCccCcccCCC
Q 012238          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAE  311 (467)
Q Consensus       233 i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~  311 (467)
                      +++++|+||||.+++   +++|+++|++||+++|+||+|....++.   ...+...... ....+++++|+||.++  |+
T Consensus       179 v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~~~di~~~s~sK~~~--g~  250 (399)
T 3tqx_A          179 IATDGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGE---NGRGTPEYCGVADRVDILTGTLGKALG--GA  250 (399)
T ss_dssp             EEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSST---TSCCHHHHHTCTTCCSEEEEESSSSSC--SS
T ss_pred             EEEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCC---CCCchHHhhCCCCCCcEEEecchHhcc--cC
Confidence            999999999999999   6688888999999999999996322221   1111212222 1245699999999998  34


Q ss_pred             ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc--cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012238          312 RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ  389 (467)
Q Consensus       312 RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~  389 (467)
                      +.||++   .++++++.            +.......  ....+...+.++...++..      .+++++.+++++++++
T Consensus       251 ~gG~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~  309 (399)
T 3tqx_A          251 SGGYTS---GHKEIIEW------------LRNRSRPYLFSNTVAPVIVATSLKVLELL------KTEGPQLRKQLQENSR  309 (399)
T ss_dssp             CCEEEE---ECHHHHHH------------HHHHCHHHHSSCCCCHHHHHHHHHHHHHH------HHTHHHHHHHHHHHHH
T ss_pred             ceEEEE---cCHHHHHH------------HHHhCcceeccCCCcHHHHHHHHHHHHHH------hhccHHHHHHHHHHHH
Confidence            459985   77888777            44332211  2244555544554444311      1346788999999999


Q ss_pred             HHHHHhhhccCCCCCcccccCCcceEEecCC-----CHHHHHHHHHcccEEEeCC-------C----eEEec-cCChhhH
Q 012238          390 KLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD-------G----RISLA-GLSLAKC  452 (467)
Q Consensus       390 ~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g-------g----Ris~~-~~~~~~i  452 (467)
                      ++.+.|+ ++|    +++.++.++ |+|+.+     ..++.+++++ +||.+.++       +    ||+++ ..+++++
T Consensus       310 ~l~~~L~-~~g----~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i  382 (399)
T 3tqx_A          310 YFRAGME-KLG----FQLVPGNHP-IIPVMLGDAQLATNMADHLLQ-EGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQL  382 (399)
T ss_dssp             HHHHHHH-HHT----CCBCCCSSS-EEEEEEECHHHHHHHHHHHHH-TTEECCEECTTTSCTTCEEEEEECCTTCCHHHH
T ss_pred             HHHHHHH-HcC----CCcCCCCCC-EEEEEeCCHHHHHHHHHHHHH-CCCEEeeeCCCCCCCCCceEEEEeecCCCHHHH
Confidence            9999999 887    466666665 555433     2345666666 59999843       2    99987 4488999


Q ss_pred             HHHHHHHHHHHHhc
Q 012238          453 EYLADAIIDSYHNV  466 (467)
Q Consensus       453 ~~~~~~l~~~l~~~  466 (467)
                      ++++++|+++++++
T Consensus       383 ~~~~~~l~~~~~~~  396 (399)
T 3tqx_A          383 DRAIEAFGQVGKKL  396 (399)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999875

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.97  E-value=6.9e-30  Score=257.04  Aligned_cols=313  Identities=12%  Similarity=0.066  Sum_probs=219.8

Q ss_pred             cEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchH---HHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLA---AFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        85 ~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~---~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      ..++++|.| |....+++.+.+.+++.........+.|.+ .|.+   ++++++++++..        +++++  +.||+
T Consensus        20 ~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~g~--------~~~i~--~~~g~   87 (404)
T 1e5e_A           20 DQFGAAIPP-IYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLEKT--------EACVA--TSSGM   87 (404)
T ss_dssp             CTTCCSSCC-CCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHHTC--------SEEEE--ESSHH
T ss_pred             CCCCCcCCC-CcCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHhCC--------CcEEE--eCChH
Confidence            356888887 433333444555555433222222366865 5666   999999999743        25666  78889


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~  237 (467)
                      +++.++  +...+.+||+|+++.|+|..+..    .++..|++++.++..       |++.+++.++   ++++++++++
T Consensus        88 ~ai~~~--~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~---~~t~~v~l~~  155 (404)
T 1e5e_A           88 GAIAAT--VLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-------IPGEVKKHMK---PNTKIVYFET  155 (404)
T ss_dssp             HHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------STTHHHHHCC---TTEEEEEEES
T ss_pred             HHHHHH--HHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-------CHHHHHHhcC---CCCcEEEEEC
Confidence            999997  44457799999999999999888    788899999988762       7889999887   5788999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHh-cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCcc-ce
Q 012238          238 AHNPTGIDPTPEQWEKIADVIQE-KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GA  315 (467)
Q Consensus       238 p~NPTG~~~~~~~l~~l~~~~~~-~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~  315 (467)
                      |+||||.+++   +++|+++|++ +|+++|+||+|..+.+..      ++    . .+.++++.|+||.++++|+|+ ||
T Consensus       156 p~NptG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~~------~~----~-~~~di~~~S~sK~~~~~g~ri~G~  221 (404)
T 1e5e_A          156 PANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITN------PV----D-FGVDVVVHSATKYINGHTDVVAGL  221 (404)
T ss_dssp             SCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCC------GG----G-GTCSEEEEETTTTTTCSSCCCCEE
T ss_pred             CCCCCCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhCC------cc----c-cCCEEEEEcCccccCCCCCCeEEE
Confidence            9999999997   6688888999 999999999999887531      11    1 146799999999999999998 99


Q ss_pred             EEEecCCHHHHh-hhhhhhHHHHHHHHHhhccCc-cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          316 MNVVCSSSDLAA-RCCEVAVIQVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  393 (467)
Q Consensus       316 ~~~v~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~  393 (467)
                      ++   .+++.++ .            +....... ..+.+.+.+.++...|++..          ...++..++.+.+.+
T Consensus       222 ~~---~~~~~~~~~------------l~~~~~~~~g~~~~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~l~~  276 (404)
T 1e5e_A          222 IC---GKADLLQQI------------RMVGIKDITGSVISPHDAWLITRGLSTLN----------IRMKAESENAMKVAE  276 (404)
T ss_dssp             EE---ECHHHHHHH------------HHTCCCCCCCCCCCHHHHHHHHHHHTTHH----------HHHHHHHHHHHHHHH
T ss_pred             EE---ECHHHHHHH------------HHHHHHhCCCCCCCHHHHHHHHHhHhHHH----------HHHHHHHHHHHHHHH
Confidence            96   6676666 5            66655554 44677778888777776531          122223334444444


Q ss_pred             HhhhccC------CCC-----CcccccCC----cceEEecCCC--HHHHHHHHHcccEEEeC------------------
Q 012238          394 SLSAKDK------SGK-----DWSFILRQ----IGMFSFTGLN--KAQSDNMTNKWHVYMTK------------------  438 (467)
Q Consensus       394 ~l~~~~g------~~~-----~~~~~~~~----~g~f~~~~l~--~~~~~~ll~~~gI~v~~------------------  438 (467)
                      .++ +..      .++     .+++..++    ++++.| .+.  .+.+.+++++.||.+..                  
T Consensus       277 ~l~-~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~  354 (404)
T 1e5e_A          277 YLK-SHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTH  354 (404)
T ss_dssp             HHH-TCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EETTHHHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTT
T ss_pred             HHH-hCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEE-EeCCCHHHHHHHHHhCCCceeccCCCCcceeeeccccccc
Confidence            444 321      010     13333333    888877 443  24577788888874332                  


Q ss_pred             -----------C---C--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          439 -----------D---G--RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       439 -----------g---g--Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                                 |   |  |||++.   ++++.++++|+++++.
T Consensus       355 ~~~~~~~~~~~g~~~~~iRis~g~---e~~~~li~~l~~al~~  394 (404)
T 1e5e_A          355 AVVPKEEREAAGITDGMIRLSVGI---EDADELIADFKQGLDA  394 (404)
T ss_dssp             TTSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHhcCCCCCeEEEEeCC---CCHHHHHHHHHHHHHH
Confidence                       1   3  999987   7889999999888764

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.97  E-value=7.1e-30  Score=254.96  Aligned_cols=320  Identities=13%  Similarity=0.092  Sum_probs=226.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-CC---CCcC--CCCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE---NKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~~---~~~Y--~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (467)
                      +.+.|||+.|.+   .+++ .++.+.+++.+.+.. +.   ...|  ....+..++|+++++++..       ++.+++ 
T Consensus        38 g~~~id~~~~~~---~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~-------~~~i~~-  105 (384)
T 1bs0_A           38 DRQYLNFSSNDY---LGLS-HHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGY-------SRALLF-  105 (384)
T ss_dssp             TEEEEECSCCCT---TSGG-GCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC-------SEEEEE-
T ss_pred             CceEEEeeccCc---cCCC-CCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCC-------CcEEEe-
Confidence            347899999864   1322 377888888887743 21   1223  4457899999999999732       334544 


Q ss_pred             ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i  235 (467)
                        .+|++++.++  +...+.+||.|+++.|+|..+...++..|++++.+|.       .|++.+++.+++..++++++++
T Consensus       106 --~sGt~a~~~~--~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~v~~  174 (384)
T 1bs0_A          106 --ISGFAANQAV--IAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVT  174 (384)
T ss_dssp             --SCHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEE
T ss_pred             --CCcHHHHHHH--HHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhcCCCCeEEEE
Confidence              5558999987  4444679999999999999999999999999988874       5899999999864334789999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccce
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  315 (467)
                      ++||||||.+++   +++|+++|++||+++|+||+|..+.++.   ............ ..++++||||.++++|   ||
T Consensus       175 ~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~-~di~~~s~sK~~~~~G---G~  244 (384)
T 1bs0_A          175 EGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGE---QGRGSCWLQKVK-PELLVVTFGKGFGVSG---AA  244 (384)
T ss_dssp             ESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSG---GGCCHHHHTTCC-CSEEEEESSSTTSSCC---EE
T ss_pred             eCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecC---CCCchHHhcCCC-CcEEEeeccchhhccC---cE
Confidence            999999999999   5578888999999999999997665431   001111122222 3488999999999777   99


Q ss_pred             EEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc--cCCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHH
Q 012238          316 MNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLF  392 (467)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~-~l~~~~~~~~~~r~~l~  392 (467)
                      ++   .++++++.            +.......  ..+++.+.+.++..+|+..      .+ .+++.+++++++++++.
T Consensus       245 ~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~~~~~~~al~~~------~~~~~~~~~~~~~~~~~~l~  303 (384)
T 1bs0_A          245 VL---CSSTVADY------------LLQFARHLIYSTSMPPAQAQALRASLAVI------RSDEGDARREKLAALITRFR  303 (384)
T ss_dssp             EE---ECHHHHHH------------HHHHCHHHHSSBCCCHHHHHHHHHHHHHH------HSHHHHHHHHHHHHHHHHHH
T ss_pred             EE---eCHHHHHH------------HHHhchhhhcCCCCCHHHHHHHHHHHHHH------hccccHHHHHHHHHHHHHHH
Confidence            85   57877776            33322111  2246666666665555321      11 35678888999999999


Q ss_pred             HHhhhccCCCCCcccccCCcceEEecCCC-----HHHHHHHHHcccEEEeCC---------C--eEEeccC-ChhhHHHH
Q 012238          393 DSLSAKDKSGKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD---------G--RISLAGL-SLAKCEYL  455 (467)
Q Consensus       393 ~~l~~~~g~~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g---------g--Ris~~~~-~~~~i~~~  455 (467)
                      +.|+ ++|    +++.++ ++.|+|+.+.     .++.+.+++ +||.+.++         +  ||+++.. ++++++++
T Consensus       304 ~~L~-~~g----~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~  376 (384)
T 1bs0_A          304 AGVQ-DLP----FTLADS-CSAIQPLIVGDNSRALQLAEKLRQ-QGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRL  376 (384)
T ss_dssp             HHHT-TSS----CEECSC-CSSBCCEEEESHHHHHHHHHHHHH-TTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHH
T ss_pred             HHHH-hcC----CcccCC-CCCEEEEEeCCHHHHHHHHHHHHH-CCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHH
Confidence            9999 776    455544 4445555432     234556665 59999864         2  8998743 78999999


Q ss_pred             HHHHHHH
Q 012238          456 ADAIIDS  462 (467)
Q Consensus       456 ~~~l~~~  462 (467)
                      +++|+++
T Consensus       377 ~~~l~~~  383 (384)
T 1bs0_A          377 LEVLHGN  383 (384)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9999875

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.97  E-value=1.4e-29  Score=252.65  Aligned_cols=316  Identities=13%  Similarity=0.067  Sum_probs=223.5

Q ss_pred             CCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCE
Q 012238          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK  179 (467)
Q Consensus       100 p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~  179 (467)
                      .++++.+.+++.+.+.    ..|.+.  ..++++.+++++....|.+ +++++++  |+||++++.++  +...+.+||+
T Consensus        29 ~~~~~~v~~a~~~~~~----~~~~~~--~~~~~~~~~~~la~~~g~~-~~~~v~~--~~g~t~a~~~~--~~~l~~~gd~   97 (386)
T 2dr1_A           29 VACFPEVLEIMKVQMF----SHRSKE--YRKVHMDTVERLREFLEVE-KGEVLLV--PSSGTGIMEAS--IRNGVSKGGK   97 (386)
T ss_dssp             CCCCHHHHHHTTSCCC----CTTSHH--HHHHHHHHHHHHHHHHTCS-SSEEEEE--SSCHHHHHHHH--HHHHSCTTCE
T ss_pred             cCCcHHHHHHHhcccc----cccCHH--HHHHHHHHHHHHHHHhCCC-CCcEEEE--eCChHHHHHHH--HHHhhcCCCe
Confidence            3447788877755432    245432  2455555555544333333 3567888  99999999998  3444679999


Q ss_pred             EEEcCCCCcc--hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 012238          180 VLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV  257 (467)
Q Consensus       180 Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~  257 (467)
                      |++++|+|..  +...++..|++++.++.+  .++.+|++.+++.+++. ++++++++++|+||||.+.+   +++|+++
T Consensus        98 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~---l~~i~~l  171 (386)
T 2dr1_A           98 VLVTIIGAFGKRYKEVVESNGRKAVVLEYE--PGKAVKPEDLDDALRKN-PDVEAVTITYNETSTGVLNP---LPELAKV  171 (386)
T ss_dssp             EEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEECC---HHHHHHH
T ss_pred             EEEEcCCchhHHHHHHHHHhCCceEEEecC--CCCCCCHHHHHHHHhcC-CCCcEEEEEeecCCcchhCC---HHHHHHH
Confidence            9999999988  888999999999999984  35679999999999642 35678888999999999987   5678888


Q ss_pred             HHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHH
Q 012238          258 IQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQV  337 (467)
Q Consensus       258 ~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~  337 (467)
                      |++||+++|+||+|..+... .  +   +    .....++++.|+||.++.++ ++||++   .++++++.        +
T Consensus       172 ~~~~~~~li~D~a~~~~~~~-~--~---~----~~~~~di~~~s~sK~~~~~~-g~G~~~---~~~~~~~~--------~  229 (386)
T 2dr1_A          172 AKEHDKLVFVDAVSAMGGAD-I--K---F----DKWGLDVVFSSSQKAFGVPP-GLAIGA---FSERFLEI--------A  229 (386)
T ss_dssp             HHHTTCEEEEECTTTBTTBC-C--C---T----TTTTCSEEEEETTSTTCCCS-SCEEEE---ECHHHHHH--------H
T ss_pred             HHHcCCeEEEEccccccCcc-c--c---c----cccCCcEEEEeccccccCCC-ceEEEE---ECHHHHHH--------H
Confidence            99999999999998866542 1  1   1    11245789999999998663 389996   56777665        2


Q ss_pred             H------------HHHHhh--ccCccCCCchHHHHHHHHHhCChhhHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          338 K------------SQLKRL--ARPMYSNPPVHGARIVANVVGNPALFDEWKAE--MEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       338 ~------------~~l~~~--~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~--l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      .            ..+...  ......+++...+.++..+|+.      +.+.  +++.+++++++++++.+.|+ ++| 
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~------~~~~g~~~~~~~~~~~~~~~l~~~L~-~~g-  301 (386)
T 2dr1_A          230 EKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRI------IEKMGGKEKWLEMYEKRAKMVREGVR-EIG-  301 (386)
T ss_dssp             TTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHHH-HTT-
T ss_pred             hcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHHHHHHH-HcC-
Confidence            1            011211  1222345677777777666532      1222  66788999999999999999 776 


Q ss_pred             CCCcccccCC---cceEEecC----CCHH-HHHHHHHcccEEEeCC------C--eEEecc-CChhhHHHHHHHHHHHHH
Q 012238          402 GKDWSFILRQ---IGMFSFTG----LNKA-QSDNMTNKWHVYMTKD------G--RISLAG-LSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       402 ~~~~~~~~~~---~g~f~~~~----l~~~-~~~~ll~~~gI~v~~g------g--Ris~~~-~~~~~i~~~~~~l~~~l~  464 (467)
                         +++..+.   .+.++|+.    .+.+ +.++++++ ||.+.+|      +  ||+++. .+++++++++++|+++++
T Consensus       302 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  377 (386)
T 2dr1_A          302 ---LDILAEPGHESPTITAVLTPPGIKGDEVYEAMRKR-GFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVIN  377 (386)
T ss_dssp             ---CCBSSCTTCBCSSEEEEECCTTCCHHHHHHHHHHT-TEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred             ---CeeCcCccccCCceEEEEcCCCCCHHHHHHHHHHC-CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence               4555553   24555553    3444 45666665 9999886      2  999984 488999999999999987


Q ss_pred             hc
Q 012238          465 NV  466 (467)
Q Consensus       465 ~~  466 (467)
                      ++
T Consensus       378 ~~  379 (386)
T 2dr1_A          378 EL  379 (386)
T ss_dssp             HH
T ss_pred             Hc
Confidence            54

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.97  E-value=1.1e-29  Score=254.32  Aligned_cols=308  Identities=14%  Similarity=0.116  Sum_probs=217.8

Q ss_pred             chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCCchhHHHHHHHHHHHhCCCCEE
Q 012238          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGTGSLRLAAALIERYFPGAKV  180 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt~al~l~~~~l~~~~~gd~V  180 (467)
                      +++.+.+++.+.+.    ..|.+.  ..++++.+++++....|.  +++ ++++  |+||++++.++  +...+.+||+|
T Consensus        45 ~~~~v~~a~~~~~~----~~~~~~--~~~~~~~~~~~la~~~g~--~~~~~v~~--t~g~t~al~~~--~~~~~~~gd~V  112 (393)
T 1vjo_A           45 AHPSVLQAMNVSPV----GHLDPA--FLALMDEIQSLLRYVWQT--ENPLTIAV--SGTGTAAMEAT--IANAVEPGDVV  112 (393)
T ss_dssp             CCHHHHHHHSSCCC----CTTSHH--HHHHHHHHHHHHHHHHTC--CCSCEEEE--SSCHHHHHHHH--HHHHCCTTCEE
T ss_pred             CCHHHHHHHhcccc----cccCHH--HHHHHHHHHHHHHHHhCC--CCCcEEEE--eCchHHHHHHH--HHhccCCCCEE
Confidence            47888888766542    245432  344555555554333232  356 8988  99999999998  44446799999


Q ss_pred             EEcCCCCcc--hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 012238          181 LISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI  258 (467)
Q Consensus       181 lv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~  258 (467)
                      ++++|+|..  +...++..|++++.++.+  .++.+|++.+++.+++.  +++++++++|+||||.+++   +++|+++|
T Consensus       113 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---l~~i~~l~  185 (393)
T 1vjo_A          113 LIGVAGYFGNRLVDMAGRYGADVRTISKP--WGEVFSLEELRTALETH--RPAILALVHAETSTGARQP---LEGVGELC  185 (393)
T ss_dssp             EEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC---CTTHHHHH
T ss_pred             EEEcCChhHHHHHHHHHHcCCceEEEecC--CCCCCCHHHHHHHHhhC--CceEEEEeccCCCcceecc---HHHHHHHH
Confidence            999999998  999999999999999984  35679999999999731  5668888999999999987   56788889


Q ss_pred             HhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHH
Q 012238          259 QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVK  338 (467)
Q Consensus       259 ~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~  338 (467)
                      +++|+++|+||+|. +..  ...+   +    .....++++.|+||.++.+| |+||++   .++++++.          
T Consensus       186 ~~~~~~li~Dea~~-~g~--~~~~---~----~~~~~di~~~s~sK~l~~~~-~~G~l~---~~~~~~~~----------  241 (393)
T 1vjo_A          186 REFGTLLLVDTVTS-LGG--VPIF---L----DAWGVDLAYSCSQKGLGCSP-GASPFT---MSSRAIEK----------  241 (393)
T ss_dssp             HHHTCEEEEECTTT-TTT--SCCC---T----TTTTCSEEECCSSSTTCSCS-SCEEEE---ECHHHHHH----------
T ss_pred             HHcCCEEEEECCcc-ccC--cCCc---c----cccCccEEEEcCcccccCCC-ceEEEE---ECHHHHHH----------
Confidence            99999999999988 321  1111   1    12245788999999998787 999996   66777665          


Q ss_pred             HHHHhh-------------------ccCccC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012238          339 SQLKRL-------------------ARPMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK  398 (467)
Q Consensus       339 ~~l~~~-------------------~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~  398 (467)
                        ++..                   ...... +++...+.++..+|+..  .   ...+++.+++++++++++.+.|+ +
T Consensus       242 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~--~---~~~~~~~~~~~~~~~~~l~~~L~-~  313 (393)
T 1vjo_A          242 --LQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLI--A---QEGLANCWQRHQKNVEYLWERLE-D  313 (393)
T ss_dssp             --HHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHH--H---HHCHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             --HhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHH--H---HccHHHHHHHHHHHHHHHHHHHH-H
Confidence              4221                   001122 56777777776666421  1   22367888999999999999999 7


Q ss_pred             cCCCCCcccccCCc---ceEEec----CCCHH-HHHHHHHcccEEEeCC------C--eEEe-c-cCChhhHHHHHHHHH
Q 012238          399 DKSGKDWSFILRQI---GMFSFT----GLNKA-QSDNMTNKWHVYMTKD------G--RISL-A-GLSLAKCEYLADAII  460 (467)
Q Consensus       399 ~g~~~~~~~~~~~~---g~f~~~----~l~~~-~~~~ll~~~gI~v~~g------g--Ris~-~-~~~~~~i~~~~~~l~  460 (467)
                      +|    +++..+.+   +.++++    +.+.+ +.+.+++++||.+.+|      +  ||++ + ..+++++++++++|+
T Consensus       314 ~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~  389 (393)
T 1vjo_A          314 IG----LSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALE  389 (393)
T ss_dssp             TT----CCBSSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred             cC----CcccCCccccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHH
Confidence            76    45555543   223333    23444 4566666559999886      2  9994 3 225667999999999


Q ss_pred             HHHH
Q 012238          461 DSYH  464 (467)
Q Consensus       461 ~~l~  464 (467)
                      ++++
T Consensus       390 ~~l~  393 (393)
T 1vjo_A          390 QVLR  393 (393)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8763

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.97  E-value=7.8e-30  Score=251.04  Aligned_cols=321  Identities=13%  Similarity=0.031  Sum_probs=214.7

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (467)
                      ++|+|+.+.+    ..  +++.+++++.+... + ...|.+..+..+||+++++++..        +++++  +.||+++
T Consensus         4 ~~i~~~~~~~----~~--p~~~~~~a~~~~~~-~-~~~y~~~~~~~~l~~~la~~~g~--------~~~~~--~~~gt~a   65 (347)
T 1jg8_A            4 MMIDLRSDTV----TK--PTEEMRKAMAQAEV-G-DDVYGEDPTINELERLAAETFGK--------EAALF--VPSGTMG   65 (347)
T ss_dssp             -CEECSCGGG----CC--CCHHHHHHHHTCCC-C-CGGGTCCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHH
T ss_pred             eEEEeccccC----CC--CCHHHHHHHhcCCC-C-CcccCCChHHHHHHHHHHHHhCC--------ceEEE--ecCcHHH
Confidence            6799998876    33  36788888765432 2 24687888999999999999743        24566  7888999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcc-hH--HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEeCC
Q 012238          164 LRLAAALIERYFPGAKVLISSPTWGN-HK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGC  237 (467)
Q Consensus       164 l~l~~~~l~~~~~gd~Vlv~~P~y~~-~~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~  237 (467)
                      +.++  +...+.|||+|++++|+|.. |.  ..++..|++++.+ ..  +++.+|++.+++.+++.   .++++++++++
T Consensus        66 ~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~--~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~  140 (347)
T 1jg8_A           66 NQVS--IMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG--KNGAMDPDDVRKAIRPRNIHFPRTSLIAIEN  140 (347)
T ss_dssp             HHHH--HHHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE--ETTEECHHHHHHHSCCSCTTSCCEEEEEEES
T ss_pred             HHHH--HHHhcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC--CCCccCHHHHHHHhccccccccCceEEEEec
Confidence            8876  44456799999999999864 32  3567789998888 42  24568999999998741   12688999999


Q ss_pred             CCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCC--CCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccc
Q 012238          238 AHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF--ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (467)
Q Consensus       238 p~NPT-G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG  314 (467)
                      ||||| |.+++.+++++|+++|+++|+++|+|++|...  .+.+  .+.   ..+....+ . ++.|+||.++++   +|
T Consensus       141 ~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~--~~~---~~~~~~~d-~-~~~s~sK~l~~~---~G  210 (347)
T 1jg8_A          141 THNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASG--VPV---KEYAGYAD-S-VMFCLSKGLCAP---VG  210 (347)
T ss_dssp             SBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHC--CCH---HHHHHTCS-E-EEEESSSTTCCS---SC
T ss_pred             cccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcC--CCh---HHhccccc-E-EEEecccccCCC---ce
Confidence            99999 99999999999999999999999999986421  1111  111   12222233 3 345899999853   78


Q ss_pred             eEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCcc--CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          315 AMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMY--SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  392 (467)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~  392 (467)
                      |++  +.++++++.            +........  ...+.+.+.++...|+..         .+.+.+ ..++++.+.
T Consensus       211 ~~~--~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~-~~~~~~~l~  266 (347)
T 1jg8_A          211 SVV--VGDRDFIER------------ARKARKMLGGGMRQAGVLAAAGIIALTKM---------VDRLKE-DHENARFLA  266 (347)
T ss_dssp             EEE--EECHHHHHH------------HHHHHHHHTCCCSSTHHHHHHHHHHHHHS---------STTHHH-HHHHHHHHH
T ss_pred             EEE--EcCHHHHHH------------HHHHHHHcCCchhHHHHHHHHHHHHHHHH---------HHHHHH-HHHHHHHHH
Confidence            643  467877776            322222111  122334434433333210         111222 234667888


Q ss_pred             HHhhhccCCCCCccc-ccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCCC----eEEec-cCChhhHHHHHHHHH
Q 012238          393 DSLSAKDKSGKDWSF-ILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAII  460 (467)
Q Consensus       393 ~~l~~~~g~~~~~~~-~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~gg----Ris~~-~~~~~~i~~~~~~l~  460 (467)
                      +.|+ ++|+    .+ ..+..+.|+|+.+     +. ++.+++. ++||.+.++|    ||+++ ..+++++++++++|+
T Consensus       267 ~~L~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~  340 (347)
T 1jg8_A          267 LKLK-EIGY----SVNPEDVKTNMVILRTDNLKVNAHGFIEALR-NSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFE  340 (347)
T ss_dssp             HHHH-HHTC----BCCGGGCCSSEEEEECTTSSSCHHHHHHHHH-HHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHH-hcCc----eeccCCCcceEEEEEcccccCCHHHHHHHHH-HCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            8888 6653    32 2233444677643     23 4456665 4699998864    99884 457899999999999


Q ss_pred             HHHHhcC
Q 012238          461 DSYHNVS  467 (467)
Q Consensus       461 ~~l~~~~  467 (467)
                      +++++++
T Consensus       341 ~~l~~~~  347 (347)
T 1jg8_A          341 KLFRKFS  347 (347)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9988764

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.97  E-value=1.3e-29  Score=251.65  Aligned_cols=325  Identities=12%  Similarity=0.018  Sum_probs=222.5

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--------CCCcCCCCcchHHHHHH-HHHHHhCCCCcccccCce
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--------ENKEYLPIEGLAAFNKV-TAELLFGADNSVLKEQRV  152 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--------~~~~Y~~~~G~~~lr~a-ia~~l~~~~~~~~~~~~i  152 (467)
                      .++.++|..|.+    ..+ +++.+.+++.+.+...        ....|.+..+..++|++ +++++..       + +|
T Consensus         6 ~~~~i~ld~~~~----~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~-------~-~v   72 (371)
T 2e7j_A            6 TKDFINIDPLQT----GGK-LTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC-------D-VA   72 (371)
T ss_dssp             --CCEECCHHHH----TCC-CCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTS-------S-EE
T ss_pred             CCCcEEeccccc----CCC-CCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCC-------C-EE
Confidence            346889988765    333 3788999988876432        12345577899999999 9999642       2 78


Q ss_pred             eeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEee--eecCCCCCCChhhHHHHHHcCC--C
Q 012238          153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYR--YYDPKTVGLDFEGMIADIKAAP--G  228 (467)
Q Consensus       153 ~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~--~~~~~~~~~d~~~l~~~l~~~~--~  228 (467)
                      ++  |+|+++++.++  +...+.+||+|++++|+|..+...++..|++++.++  .  +.++.+|++.+++.+++..  +
T Consensus        73 ~~--~~g~t~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l~~~~~~~  146 (371)
T 2e7j_A           73 RV--TNGAREAKFAV--MHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTD--YPDYAITPENFAQTIEETKKRG  146 (371)
T ss_dssp             EE--ESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCC--TTTCCCCHHHHHHHHHHHTTTS
T ss_pred             EE--eCChHHHHHHH--HHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeeccc--CCCCCcCHHHHHHHHHhhcccC
Confidence            88  99999999998  344467999999999999999999999999999998  6  3457899999999997421  3


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc
Q 012238          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (467)
                      +++++++++|+||||.+++.   ++|+++|++||+++|+||+|..+...   .+   +..+    ...+++.|+||.++.
T Consensus       147 ~~~~v~~~~~~nptG~~~~~---~~i~~~~~~~~~~li~D~a~~~~~~~---~~---~~~~----~~di~~~s~sK~~~~  213 (371)
T 2e7j_A          147 EVVLALITYPDGNYGNLPDV---KKIAKVCSEYDVPLLVNGAYAIGRMP---VS---LKEI----GADFIVGSGHKSMAA  213 (371)
T ss_dssp             CEEEEEEESSCTTTCCCCCH---HHHHHHHHTTTCCEEEECTTTBTTBC---CC---HHHH----TCSEEEEEHHHHSSC
T ss_pred             CeEEEEEECCCCCCcccCCH---HHHHHHHHHcCCeEEEECccccCCCC---CC---hhhc----CCCEEEecCCcCCCC
Confidence            67889999999999999996   57777899999999999999876532   11   1111    234889999999885


Q ss_pred             CCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhcc-Cc------cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 012238          309 YAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLAR-PM------YSNPPVHGARIVANVVGNPALFDEWKAEMEMMA  381 (467)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~------~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~  381 (467)
                      + .|+||++   .++++++.        .   +..... ..      ...++...+.++..++.   +    .+.  +..
T Consensus       214 ~-~~~G~~~---~~~~~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~----~~~--~~~  269 (371)
T 2e7j_A          214 S-GPIGVMG---MKEEWAEI--------V---LRRSEKYKNKEVELLGCTARGATIITLMASFP---H----VRE--RIK  269 (371)
T ss_dssp             C-SSCEEEE---ECTTTTTT--------T---TCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHH---H----HHH--HGG
T ss_pred             C-CCcEEEE---Eechhhhh--------h---ccccccCcccccccccCCcCHHHHHHHHHHHH---H----HHH--HHH
Confidence            4 5999996   44444321        0   111111 01      12233333333333331   1    111  456


Q ss_pred             HHH--HHHHHHHHHHhhhccCCCCCcccccCC--cceEEecCC-CHHHHHHHHHcccEEEeC--------C---C--e-E
Q 012238          382 GRI--KNVRQKLFDSLSAKDKSGKDWSFILRQ--IGMFSFTGL-NKAQSDNMTNKWHVYMTK--------D---G--R-I  442 (467)
Q Consensus       382 ~~~--~~~r~~l~~~l~~~~g~~~~~~~~~~~--~g~f~~~~l-~~~~~~~ll~~~gI~v~~--------g---g--R-i  442 (467)
                      +++  +++++++.+.|+ +++    +++..+.  .+.++|+.+ +.+.+.+.+.++||.+.+        |   +  | |
T Consensus       270 ~~~~~~~~~~~l~~~L~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii  344 (371)
T 2e7j_A          270 RWDEEVEKARRFAAEME-KLG----IKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYF  344 (371)
T ss_dssp             GHHHHHHHHHHHHHHHH-HTT----CEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEE
T ss_pred             HHHHHHHHHHHHHHHHH-HcC----cEEecCCCccCceEEEECCCHHHHHHHHHHCCEEEEeccccccccCCCCCceEEE
Confidence            667  888899999998 765    4555553  244677765 333333334467998865        2   2  9 9


Q ss_pred             Eecc--CChhhHHHHHHHHHHHHHhcC
Q 012238          443 SLAG--LSLAKCEYLADAIIDSYHNVS  467 (467)
Q Consensus       443 s~~~--~~~~~i~~~~~~l~~~l~~~~  467 (467)
                      +++.  .+++++++++++|++++++++
T Consensus       345 ~~~~~~~~~~~i~~~~~~l~~~~~~~~  371 (371)
T 2e7j_A          345 KLSTYGLSDEEVDYVLNAFKEIIEKYS  371 (371)
T ss_dssp             EEECTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred             EeeccCCCHHHHHHHHHHHHHHHHhcC
Confidence            9985  488999999999999998764

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.97  E-value=8.8e-30  Score=257.88  Aligned_cols=338  Identities=10%  Similarity=0.034  Sum_probs=226.3

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      ...|||+.|.+...-++  .++.+.+++.+.+.....  ..|.+..+..++|+++++++.+.     .+++|++  |+||
T Consensus        41 ~~~id~~~~~~~~~lg~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-----~~~~v~~--~~g~  111 (426)
T 1sff_A           41 REYLDFAGGIAVLNTGH--LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGD-----FAKKTLL--VTTG  111 (426)
T ss_dssp             CEEEESSHHHHTCTTCB--TCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCS-----SCEEEEE--ESSH
T ss_pred             CEEEEcccChhhcccCC--CCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCcc-----cccEEEE--eCch
Confidence            46899998874211233  378889999888754211  24667889999999999997321     1478988  9999


Q ss_pred             hhHHHHHHHHH-HHhCCCCEEEEcCCCCcchH-HHHhhCCCC-------------eEEeeeecC---CCCCCChhhHHHH
Q 012238          161 TGSLRLAAALI-ERYFPGAKVLISSPTWGNHK-NIFNDARVP-------------WSEYRYYDP---KTVGLDFEGMIAD  222 (467)
Q Consensus       161 t~al~l~~~~l-~~~~~gd~Vlv~~P~y~~~~-~~~~~~G~~-------------~~~v~~~~~---~~~~~d~~~l~~~  222 (467)
                      ++++.++..+. ....+| +|++++|+|..+. ..+...|.+             ++.+++..+   .++.+|++.+++.
T Consensus       112 ~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~  190 (426)
T 1sff_A          112 SEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRI  190 (426)
T ss_dssp             HHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHH
Confidence            99999984422 234455 8999999997654 456666653             566666321   1234789999999


Q ss_pred             HHcC--CCCcEEEEe-CCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238          223 IKAA--PGGSFILLH-GCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (467)
Q Consensus       223 l~~~--~~~~~~i~i-~~p~NPTG-~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (467)
                      +++.  +.+++++++ ++++| || .+++.+++++|+++|++||++||+||+|.++.+.+.   ...+    +.....+.
T Consensus       191 l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~----~~~~~~~d  262 (426)
T 1sff_A          191 FKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT---LFAM----EQMGVAPD  262 (426)
T ss_dssp             HHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG----GGTTSCCS
T ss_pred             HHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc---hhhh----hhcCCCCC
Confidence            8731  134555555 56788 99 888999999999999999999999999998765321   1111    11111122


Q ss_pred             EecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                      +.||||.+++ |+|+||++   .++++++.            +.........+.+.+++.++..+|+..      .+  .
T Consensus       263 i~s~sK~~~~-GlriG~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~aal~~~------~~--~  318 (426)
T 1sff_A          263 LTTFAKSIAG-GFPLAGVT---GRAEVMDA------------VAPGGLGGTYAGNPIACVAALEVLKVF------EQ--E  318 (426)
T ss_dssp             EEEECGGGGT-SSCCEEEE---EEHHHHTT------------SCTTSBCCSSSSCHHHHHHHHHHHHHH------HH--T
T ss_pred             EEEEcccccC-CCceEEEE---EcHHHHhh------------hccCCcCcCCCCCHHHHHHHHHHHHHH------Hh--c
Confidence            4499999996 99999996   66777776            443222334456777777777665321      11  1


Q ss_pred             HHHHHHHHHHHHHHHHhhhccC--CCCCcccccCCcceEEecCCC-------------HHHHHHHHHcccEEEeCCC---
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFSFTGLN-------------KAQSDNMTNKWHVYMTKDG---  440 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g--~~~~~~~~~~~~g~f~~~~l~-------------~~~~~~ll~~~gI~v~~gg---  440 (467)
                      ...++++++++.+.+.|+ +++  ++. +....+. |+|+|+.+.             .++.+.+++ +||.+.+|+   
T Consensus       319 ~~~~~~~~~~~~l~~~l~-~~~~~~~~-~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~  394 (426)
T 1sff_A          319 NLLQKANDLGQKLKDGLL-AIAEKHPE-IGDVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPYY  394 (426)
T ss_dssp             THHHHHHHHHHHHHHHHH-HHHHTCTT-EEEEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTTS
T ss_pred             CHHHHHHHHHHHHHHHHH-HHHHhCCC-eEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHHH-CCcEEecCCCCC
Confidence            344556666667776666 532  221 2233455 567776541             234556655 699999873   


Q ss_pred             ---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          441 ---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 ---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                         ||+++ ..+++++++++++|+++++++
T Consensus       395 ~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~  424 (426)
T 1sff_A          395 NVLRILVPLTIEDAQIRQGLEIISQCFDEA  424 (426)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence               99886 458899999999999998764

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.97  E-value=4.3e-29  Score=248.38  Aligned_cols=327  Identities=12%  Similarity=0.055  Sum_probs=223.4

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +...+||+.|.+..  ...+.++.+.+++.+.+...  ....| +..+..++++++++++ +   .   ++++++  |+|
T Consensus        27 g~~~ld~~~~~~~~--~~g~~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~l~~~la~~~-g---~---~~~v~~--~~g   94 (375)
T 2eh6_A           27 GKEYLDFVSGIGVN--SLGHAYPKLTEALKEQVEKLLHVSNLY-ENPWQEELAHKLVKHF-W---T---EGKVFF--ANS   94 (375)
T ss_dssp             CCEEEESSHHHHTC--TTCBSCHHHHHHHHHHHHHCSCCCTTB-CCHHHHHHHHHHHHTS-S---S---CEEEEE--ESS
T ss_pred             CCEEEEcCCccccc--ccCCCCHHHHHHHHHHHHhccccCccc-CCHHHHHHHHHHHhhc-C---C---CCeEEE--eCc
Confidence            34789999998721  23223788888888877432  12357 6678899999999995 2   2   368888  999


Q ss_pred             chhHHHHHHHHHH-Hh---CCC-CEEEEcCCCCcchHHHHhhCCCCeE----EeeeecCC--CCCCChhhHHHHHHcCCC
Q 012238          160 GTGSLRLAAALIE-RY---FPG-AKVLISSPTWGNHKNIFNDARVPWS----EYRYYDPK--TVGLDFEGMIADIKAAPG  228 (467)
Q Consensus       160 gt~al~l~~~~l~-~~---~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~----~v~~~~~~--~~~~d~~~l~~~l~~~~~  228 (467)
                      |++++.++...+. ..   .|| |+|++++|+|..+...+...+...+    ..++.++.  -..+|++.+++.++   +
T Consensus        95 ~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~  171 (375)
T 2eh6_A           95 GTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLLD---E  171 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHHHHHTTCC---T
T ss_pred             hHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCchHHHHHHHhc---C
Confidence            9999999844321 23   678 9999999999887665544332211    00110000  00158899988876   5


Q ss_pred             CcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          229 GSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      +++++++++++||||.+ .+.+++++|+++|++||+++|+||+|.++....   ....+..+ ....+++   ||||.++
T Consensus       172 ~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~---~~~~~~~~-~~~~d~~---s~SK~~~  244 (375)
T 2eh6_A          172 ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG---EFYAYQHF-NLKPDVI---ALAKGLG  244 (375)
T ss_dssp             TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSGGGGG-TCCCSEE---EECGGGG
T ss_pred             CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC---cchhhhhc-CCCCCEE---EEccccc
Confidence            77889999999999999 568889999999999999999999999875432   11111111 1123433   7889999


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  387 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~  387 (467)
                       +|+|+||++   .++++++.            +.........+.+.+.+.++..+|+.          +.+..++++++
T Consensus       245 -~g~~~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~  298 (375)
T 2eh6_A          245 -GGVPIGAIL---AREEVAQS------------FTPGSHGSTFGGNPLACRAGTVVVDE----------VEKLLPHVREV  298 (375)
T ss_dssp             -TTSCCEEEE---EEHHHHTT------------CCTTSCCCSSTTCHHHHHHHHHHHHH----------HHHHHHHHHHH
T ss_pred             -CCCCeEEEE---EcHHHHhh------------hcCCCCCCCCCCCHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence             799999996   55667666            44321222335566777666555432          11567778888


Q ss_pred             HHHHHHHhhhccCCCCCcccccCCcceEEecCC---CHHHHHHHHHcccEEEeCCC----eEEec-cCChhhHHHHHHHH
Q 012238          388 RQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAI  459 (467)
Q Consensus       388 r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~~~i~~~~~~l  459 (467)
                      ++++.+.|+ +++.    ...++ .|+|+|+.+   ..++.+.+++ +||.+.+++    ||+++ ..+++++++++++|
T Consensus       299 ~~~l~~~L~-~~~~----~~~~~-~g~~~~~~~~~~~~~~~~~l~~-~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l  371 (375)
T 2eh6_A          299 GNYFKEKLK-ELGK----GKVKG-RGLMLGLELERECKDYVLKALE-KGLLINCTAGKVLRFLPPLIIQKEHIDRAISVL  371 (375)
T ss_dssp             HHHHHHHHH-HTTS----SEEEE-ETTEEEEECSSCCHHHHHHHHH-TTEECEEETTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHhc----CCceE-EEEEEEEEEcCcHHHHHHHHHH-CCCEEecCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            999999998 7652    23333 456777654   3456666665 699999763    88876 45889999999999


Q ss_pred             HHHH
Q 012238          460 IDSY  463 (467)
Q Consensus       460 ~~~l  463 (467)
                      ++++
T Consensus       372 ~~~l  375 (375)
T 2eh6_A          372 REIL  375 (375)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8763

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.97  E-value=1.5e-28  Score=242.62  Aligned_cols=331  Identities=11%  Similarity=0.015  Sum_probs=227.1

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      |..|+|+.+.+    +  ++++.+.+++.+.+.     .|.+..|..++++++++++....|  .++++|++  |+||++
T Consensus        13 p~~i~l~~~~~----~--~~~~~v~~a~~~~~~-----~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~--~~g~t~   77 (359)
T 1svv_A           13 PKPYSFVNDYS----V--GMHPKILDLMARDNM-----TQHAGYGQDSHCAKAARLIGELLE--RPDADVHF--ISGGTQ   77 (359)
T ss_dssp             --CEECSCSCS----S--CCCHHHHHHHHHHTT-----CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEE--ESCHHH
T ss_pred             CeeEEecCCCc----C--CCCHHHHHHHHHHHh-----hccccccccHHHHHHHHHHHHHhC--CCCccEEE--eCCchH
Confidence            46899987554    3  347889999988764     244445555666666666544333  23678988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHH--HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC----CCCcEEEEeC
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKN--IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA----PGGSFILLHG  236 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~----~~~~~~i~i~  236 (467)
                      ++.++  +.....+||+|++++|+|..+..  .++..|++++.++.+   ++.+|++.+++.+++.    ..++++++++
T Consensus        78 a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~  152 (359)
T 1svv_A           78 TNLIA--CSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYIS  152 (359)
T ss_dssp             HHHHH--HHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEE
T ss_pred             HHHHH--HHHHhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEEE
Confidence            99998  44446699999999999998877  478899999999872   5789999999999852    1137888888


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceE
Q 012238          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (467)
Q Consensus       237 ~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~  316 (467)
                      +| ||||.+++.+++++|+++|++||+++|+||+|.++..+....+...+ .+ .. ...+++.|.+|..++  ..+|++
T Consensus       153 ~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~-~~-~~-~~d~~~~s~~K~g~~--~~~g~l  226 (359)
T 1svv_A          153 NT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLA-DI-AR-LTDMFYIGATKAGGM--FGEALI  226 (359)
T ss_dssp             SS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHH-HH-HH-HCSEEEEECTTTTCS--SCEEEE
T ss_pred             cC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhh-hh-hh-cCCEEEEecccCCCC--CceEEE
Confidence            88 89999999999999999999999999999998544322111111111 00 01 123678889997543  446888


Q ss_pred             EEecCCHHHHhhhhhhhHHHHHHHHHhhccCccC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012238          317 NVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL  395 (467)
Q Consensus       317 ~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l  395 (467)
                      +   .++++++.        +..... ....... +.+...+  +..++.+.        .+++.+++++++++++.+.|
T Consensus       227 ~---~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~--~~~~l~~~--------~~~~~~~~~~~~~~~l~~~L  284 (359)
T 1svv_A          227 I---LNDALKPN--------ARHLIK-QRGALMAKGWLLGIQ--FEVLMKDN--------LFFELGAHSNKMAAILKAGL  284 (359)
T ss_dssp             E---CSGGGCTT--------HHHHHH-HTTCCCTTTHHHHHH--HHHHTSTT--------HHHHHHHHHHHHHHHHHHHH
T ss_pred             E---EcccHHHH--------HHHHHh-cCCcccccchhhHHH--HHHHHhhh--------hHHHHHHHHHHHHHHHHHHh
Confidence            5   67777776        322111 1111111 2222222  23345442        13467788888999999988


Q ss_pred             hhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeC---CC----eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          396 SAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTK---DG----RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       396 ~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~---gg----Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                      + ..|    +++..+.+++|+|+.+..++.+++++++||.+.+   .+    ||+++. .+++++++++++|+++++++
T Consensus       285 ~-~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  358 (359)
T 1svv_A          285 E-ACG----IRLAWPSASNQLFPILENTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST  358 (359)
T ss_dssp             H-HTT----CCBSSCCSSSEECBEEEHHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred             c-cCC----eEEccCCccceEEEEcCHHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence            6 655    5666677888999887777788887766998743   22    998753 37899999999999988764

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.97  E-value=3.4e-29  Score=250.12  Aligned_cols=321  Identities=13%  Similarity=0.026  Sum_probs=224.5

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC---CC---cCCC-CcchHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---NK---EYLP-IEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~---~~---~Y~~-~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      +.++|..+.+    + + .++.+.+++.+.+....   ..   .|.. ..+..++|+++++++..      ++++|++  
T Consensus        16 ~~i~l~~~~~----~-~-~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~------~~~~v~~--   81 (390)
T 1elu_A           16 NKTYFNFGGQ----G-I-LPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNV------DPNTITI--   81 (390)
T ss_dssp             TSEECCTTTC----C-C-CCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTS------CGGGEEE--
T ss_pred             CeEEecCCcc----C-C-CCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCC------CHHHEEE--
Confidence            5788887754    3 2 36778888887764311   01   4533 37889999999999642      2678988  


Q ss_pred             cCCchhHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHH----HhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcE
Q 012238          157 GLSGTGSLRLAAALIER-YFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~-~~~gd~Vlv~~P~y~~~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (467)
                      |+||++++.++  +... +.+||+|+++.|+|..+...    ++..|++++.++.+.++++.+|++.+++.++   ++++
T Consensus        82 ~~g~t~a~~~~--~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~---~~~~  156 (390)
T 1elu_A           82 TDNVTTGCDIV--LWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG---PKTR  156 (390)
T ss_dssp             ESSHHHHHHHH--HHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC---TTEE
T ss_pred             eCChHHHHHHH--HhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcC---CCce
Confidence            99999999997  3333 46999999999999987654    4677999999988533567899999998886   5788


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHH----hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQ----EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       232 ~i~i~~p~NPTG~~~~~~~l~~l~~~~~----~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      ++++++|+||||.+++   +++|.++|+    ++|+++|+||+|......   .+   +    .....++++.|+||.+.
T Consensus       157 ~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~---~~---~----~~~~~d~~~~s~~K~~~  223 (390)
T 1elu_A          157 LVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP---LD---F----SRLEVDYYAFTGHKWFA  223 (390)
T ss_dssp             EEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTTBC---CC---T----TTSCCSEEEEESSSTTC
T ss_pred             EEEEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCCcC---CC---h----hhcCCCEEEcccccccc
Confidence            9999999999999999   557777799    999999999998742211   11   0    11235688999999332


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc----------------------cCccCCCchHHHHHHHHHhC
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA----------------------RPMYSNPPVHGARIVANVVG  365 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~----------------------~~~~~~~~~~~~~~~~~~L~  365 (467)
                       .|.++||++   .++++++.            +....                      ......++...+.++..++.
T Consensus       224 -~~~g~G~~~---~~~~~~~~------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~  287 (390)
T 1elu_A          224 -GPAGVGGLY---IHGDCLGE------------INPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQ  287 (390)
T ss_dssp             -CCTTCEEEE---ECTTTGGG------------CCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHH
T ss_pred             -CCCceEEEE---ECHHhHhh------------cCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHH
Confidence             556799996   55666665            33211                      11123445555554444442


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCcccc---cCCcceEEec---CCCHH-HHHHHHHcccEEEe
Q 012238          366 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFI---LRQIGMFSFT---GLNKA-QSDNMTNKWHVYMT  437 (467)
Q Consensus       366 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~-g~~~~~~~~---~~~~g~f~~~---~l~~~-~~~~ll~~~gI~v~  437 (467)
                      .  +.+  ..++++++++++++++++.+.|+ ++ |    +++.   .+.++++.|.   +.+.+ +.+.+ .++||.+.
T Consensus       288 ~--l~~--~~~~~~~~~~~~~~~~~l~~~L~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~  357 (390)
T 1elu_A          288 L--HQR--QGTAEERYQAICQRSEFLWRGLN-QLPH----VHCLATSAPQAGLVSFTVDSPLGHRAIVQKL-EEQRIYLR  357 (390)
T ss_dssp             H--HHH--HCCHHHHHHHHHHHHHHHHHHHH-HSTT----EEESCSSCCSSSEEEEEECSSSCHHHHHHHH-HHTTEECE
T ss_pred             H--HHH--cCCHHHHHHHHHHHHHHHHHHHH-hcCC----cEEecCccccccEEEEEcCCCCCHHHHHHHH-HHCCEEEE
Confidence            1  100  11267788999999999999998 76 4    5555   3467776652   23444 45555 45699998


Q ss_pred             CCC-----eEEec-cCChhhHHHHHHHHHHH
Q 012238          438 KDG-----RISLA-GLSLAKCEYLADAIIDS  462 (467)
Q Consensus       438 ~gg-----Ris~~-~~~~~~i~~~~~~l~~~  462 (467)
                      +|+     ||+++ ..+++++++++++|+++
T Consensus       358 ~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~  388 (390)
T 1elu_A          358 TIADPDCIRACCHYITDEEEINHLLARLADF  388 (390)
T ss_dssp             EETTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             ecCCCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence            863     99984 34889999999988753

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.97  E-value=8.3e-29  Score=247.75  Aligned_cols=311  Identities=10%  Similarity=-0.041  Sum_probs=215.9

Q ss_pred             CCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCE
Q 012238          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK  179 (467)
Q Consensus       100 p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~  179 (467)
                      .+.++.+.+++.+.+..  ...|....+..++|+++++++..      ++++|++  |+||++++.++  +...+.+||+
T Consensus        18 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~--t~g~t~a~~~~--~~~~~~~gd~   85 (392)
T 2z9v_A           18 VNAYPEVLRGLGRTVLY--DYDPAFQLLYEKVVDKAQKAMRL------SNKPVIL--HGEPVLGLEAA--AASLISPDDV   85 (392)
T ss_dssp             CCCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHTTC------SSCCEEE--SSCTHHHHHHH--HHHHCCTTCC
T ss_pred             cCCCHHHHHHHhccccc--cccHHHHHHHHHHHHHHHHHhCC------CCCEEEE--eCCchHHHHHH--HHHhcCCCCE
Confidence            34478888888765532  12222345688999999999643      2678988  99999999998  3334679999


Q ss_pred             EEEcCCCCcch--HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 012238          180 VLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV  257 (467)
Q Consensus       180 Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~  257 (467)
                      |+++.|+|+.+  ...++..|++++.++++  .++.+|++.+++.+++. ++++++++++|+||||.+++.   ++|.++
T Consensus        86 Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~l---~~i~~l  159 (392)
T 2z9v_A           86 VLNLASGVYGKGFGYWAKRYSPHLLEIEVP--YNEAIDPQAVADMLKAH-PEITVVSVCHHDTPSGTINPI---DAIGAL  159 (392)
T ss_dssp             EEEEESSHHHHHHHHHHHHHCSCEEEEECC--TTSCCCHHHHHHHHHHC-TTCCEEEEESEEGGGTEECCH---HHHHHH
T ss_pred             EEEecCCcccHHHHHHHHHcCCceEEeeCC--CCCCCCHHHHHHHHhcC-CCCcEEEEeccCCCCceeccH---HHHHHH
Confidence            99999999765  34556689999999984  34579999999999642 356788899999999999985   577888


Q ss_pred             HHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC-cccCCCccceEEEecCCHHHHhhhhhhhHHH
Q 012238          258 IQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIGAMNVVCSSSDLAARCCEVAVIQ  336 (467)
Q Consensus       258 ~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~  336 (467)
                      |+++|+++|+|++|......   .+   +    ......+++.|+||. ++++|+  ||++   .++++++.        
T Consensus       160 ~~~~~~~li~D~a~~~g~~~---~~---~----~~~~~d~~~~s~sK~~~~~~g~--G~l~---~~~~~~~~--------  216 (392)
T 2z9v_A          160 VSAHGAYLIVDAVSSFGGMK---TH---P----EDCKADIYVTGPNKCLGAPPGL--TMMG---VSERAWAK--------  216 (392)
T ss_dssp             HHHTTCEEEEECTTTBTTBS---CC---G----GGGTCSEEEECSSSTTCCCSCC--EEEE---ECHHHHHH--------
T ss_pred             HHHcCCeEEEEcccccCCcc---cc---c----ccccceEEEecCcccccCCCce--eEEE---ECHHHHHH--------
Confidence            99999999999998632211   11   1    111245889999995 555664  9996   56777666        


Q ss_pred             HHHHHHhhc--------------------cCccCCCchHHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 012238          337 VKSQLKRLA--------------------RPMYSNPPVHGARIVANVVGNPALFDEWKAE-MEMMAGRIKNVRQKLFDSL  395 (467)
Q Consensus       337 ~~~~l~~~~--------------------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-l~~~~~~~~~~r~~l~~~l  395 (467)
                          ++...                    .....+++...+.++..++..      +.+. +++++++++++++++.+.|
T Consensus       217 ----l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~g~~~~~~~~~~~~~~l~~~L  286 (392)
T 2z9v_A          217 ----MKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDL------YLNEGPEAVWARHALTAKAMRAGV  286 (392)
T ss_dssp             ----HHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHH------HHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             ----hhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHH------HHhccHHHHHHHHHHHHHHHHHHH
Confidence                43210                    111223444444444434321      2233 6678899999999999999


Q ss_pred             hhccCCCCCccccc-CC---cceEEecC----CCHH-HHHHHHHcccEEEeCC------C--eEE-ec-cCChhhHHHHH
Q 012238          396 SAKDKSGKDWSFIL-RQ---IGMFSFTG----LNKA-QSDNMTNKWHVYMTKD------G--RIS-LA-GLSLAKCEYLA  456 (467)
Q Consensus       396 ~~~~g~~~~~~~~~-~~---~g~f~~~~----l~~~-~~~~ll~~~gI~v~~g------g--Ris-~~-~~~~~~i~~~~  456 (467)
                      + ++|    +++.. +.   .+.++|+.    .+.+ +.++|.+++||.+.+|      +  ||+ ++ ..+++++++++
T Consensus       287 ~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~  361 (392)
T 2z9v_A          287 T-AMG----LSVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAAL  361 (392)
T ss_dssp             H-HTT----CCBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHH
T ss_pred             H-HcC----CeeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHH
Confidence            8 765    45544 21   34444442    3444 4556665559999886      2  999 46 45889999999


Q ss_pred             HHHHHHHHhc
Q 012238          457 DAIIDSYHNV  466 (467)
Q Consensus       457 ~~l~~~l~~~  466 (467)
                      ++|+++++++
T Consensus       362 ~~l~~~~~~~  371 (392)
T 2z9v_A          362 TALGGAMNAA  371 (392)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999998764

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.96  E-value=1.9e-28  Score=246.12  Aligned_cols=323  Identities=11%  Similarity=0.092  Sum_probs=228.0

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-CCC---CcCC--CCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GEN---KEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~~~---~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (467)
                      +...|||+.|.|   -+.+ .++.+.+++.+.+.. +..   ..|.  ...+..++|+++++++..       ++.|++ 
T Consensus        44 g~~~id~~~~~~---~g~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~-------~~~i~~-  111 (401)
T 1fc4_A           44 GSHVINFCANNY---LGLA-NHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGM-------EDAILY-  111 (401)
T ss_dssp             SCEEEECCCSCT---TSCT-TCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTC-------SEEEEE-
T ss_pred             CccEEEeeccCc---cccc-CCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCC-------CcEEEe-
Confidence            457899999955   1221 367888888887643 211   1232  257789999999999732       245544 


Q ss_pred             ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCC---CcEE
Q 012238          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG---GSFI  232 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~---~~~~  232 (467)
                        .+|++++.++  +...+.+||.|+++.|+|..+...++..|++++.++.       .|++.+++.+++..+   ++++
T Consensus       112 --~sGs~a~~~~--~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~  180 (401)
T 1fc4_A          112 --SSCFDANGGL--FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVL  180 (401)
T ss_dssp             --SCHHHHHHTT--HHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEE
T ss_pred             --CChHHHHHHH--HHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCceE
Confidence              5567788886  4445679999999999999888889999999888763       588999998874211   6789


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCc-ccC
Q 012238          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATR-GMELLVAQSYSKNL-GLY  309 (467)
Q Consensus       233 i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~-~~~  309 (467)
                      +++++||||||.+++   +++|.++|+++|+++|+||+|. ++.+... ...   ....+. .+.++++.||||.+ +++
T Consensus       181 v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g-~~~---~~~~~~~~~~di~~~s~sK~~~~~~  253 (401)
T 1fc4_A          181 IATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENG-RGS---HEYCDVMGRVDIITGTLGKALGGAS  253 (401)
T ss_dssp             EEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTS-CCH---HHHTTCTTCCSEEEEESSSTTCSSS
T ss_pred             EEEeCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCC-Ccc---HHHcCCCcCCcEEEecchhhccCCC
Confidence            999999999999999   6688888999999999999995 7753111 111   122221 13578999999999 655


Q ss_pred             CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc--cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012238          310 AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  387 (467)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~  387 (467)
                      |   ||++   .++++++.            +.......  ..+++.+.+.++..+|+..       +..++.+++++++
T Consensus       254 g---G~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~  308 (401)
T 1fc4_A          254 G---GYTA---ARKEVVEW------------LRQRSRPYLFSNSLAPAIVAASIKVLEMV-------EAGSELRDRLWAN  308 (401)
T ss_dssp             C---EEEE---ECHHHHHH------------HHHHCHHHHHSCCCCHHHHHHHHHHHHHH-------HTCHHHHHHHHHH
T ss_pred             C---EEEE---cCHHHHHH------------HHHhCcCceeCCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHH
Confidence            5   9985   57888776            44332111  3356777777776655321       1135678888999


Q ss_pred             HHHHHHHhhhccCCCCCcccccCCcceEEecCCC----H-HHHHHHHHcccEEEeCC-------C----eEEecc-CChh
Q 012238          388 RQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----K-AQSDNMTNKWHVYMTKD-------G----RISLAG-LSLA  450 (467)
Q Consensus       388 r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~----~-~~~~~ll~~~gI~v~~g-------g----Ris~~~-~~~~  450 (467)
                      ++++.+.|+ ++|    +++.+ ..+.|+|+.+.    . ++.+.+.+ +||.+.++       +    ||+++. .+++
T Consensus       309 ~~~l~~~L~-~~g----~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~  381 (401)
T 1fc4_A          309 ARQFREQMS-AAG----FTLAG-ADHAIIPVMLGDAVVAQKFARELQK-EGIYVTGFFYPVVPKGQARIRTQMSAAHTPE  381 (401)
T ss_dssp             HHHHHHHHH-HTT----CCBCC-SSSSEEEEEEECHHHHHHHHHHHHH-TTEECCEECTTSSCTTCEEEEEECCTTCCHH
T ss_pred             HHHHHHHHH-HcC----CcccC-CCCCEEEEEcCChHHHHHHHHHHHH-CCcEEeeecCCCCCCCCceEEEEeCCCCCHH
Confidence            999999999 776    45554 45566676542    2 34555555 59998865       1    899873 3789


Q ss_pred             hHHHHHHHHHHHHHhc
Q 012238          451 KCEYLADAIIDSYHNV  466 (467)
Q Consensus       451 ~i~~~~~~l~~~l~~~  466 (467)
                      ++++++++|+++++++
T Consensus       382 ~i~~~~~~l~~~~~~~  397 (401)
T 1fc4_A          382 QITRAVEAFTRIGKQL  397 (401)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998865

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.96  E-value=1.4e-28  Score=246.21  Aligned_cols=321  Identities=11%  Similarity=0.090  Sum_probs=223.8

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC--CCcchHHHHHHHHHHHhCCCCcccccC-ceeeeec
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQG  157 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t  157 (467)
                      ..+..+++..|..      + +++.+.+++.+.+..    .|.  +..+..++|+++++++...      ++ +|++  |
T Consensus        16 ~~~~~~~~~~g~~------~-~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~g~~------~~~~i~~--~   76 (393)
T 2huf_A           16 VTPNKLLMGPGPS------N-APQRVLDAMSRPILG----HLHPETLKIMDDIKEGVRYLFQTN------NIATFCL--S   76 (393)
T ss_dssp             CCCCCEECSSSCC------C-CCHHHHHHTTSCCCC----TTSHHHHHHHHHHHHHHHHHHTCC------CSEEEEE--S
T ss_pred             CCCCeEEecCCCC------C-CCHHHHHHHHhhhcc----CCCHHHHHHHHHHHHHHHHHhCCC------CCcEEEE--c
Confidence            3356788876632      2 377888887665432    232  3457899999999997532      43 7888  9


Q ss_pred             CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcch--HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (467)
Q Consensus       158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i  235 (467)
                      +||++++.++  +...+.+||+|+++.|+|..+  ...++..|++++.++++  .++.+|++.+++.+++  .+++++++
T Consensus        77 ~g~t~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~--~~~~~v~~  150 (393)
T 2huf_A           77 ASGHGGMEAT--LCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSK--VGQSLSLDEIRDALLI--HKPSVLFL  150 (393)
T ss_dssp             SCHHHHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHH--HCCSEEEE
T ss_pred             CcHHHHHHHH--HHHHhCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCC--CCCCCCHHHHHHHHhc--cCCcEEEE
Confidence            9999999998  344467999999999999874  34556789999999984  3457999999999973  15678888


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC-cccCCCccc
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIG  314 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG  314 (467)
                      ++|+||||.+++   +++|+++|+++|+++|+|+++. +....  .+   +    .....++++.|+||. +|++|+  |
T Consensus       151 ~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~-~~~~~--~~---~----~~~~~d~~~~s~sK~l~g~~G~--G  215 (393)
T 2huf_A          151 TQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVAS-LGGAP--MF---M----DRWEIDAMYTGSQKVLGAPPGI--T  215 (393)
T ss_dssp             ESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT-BTTBC--CC---T----TTTTCSEEECCSSSTTCCCSSC--E
T ss_pred             EccCCCccccCC---HHHHHHHHHHcCCEEEEEcccc-cCCCC--cc---h----hhcCccEEEECCCcccccCCCe--E
Confidence            999999999999   5688888999999999999964 22111  11   1    112356889999996 567887  9


Q ss_pred             eEEEecCCHHHHhhhhhhhHHHHHHHHHhhc---cC--------------------ccCCCchHHHHHHHHHhCChhhHH
Q 012238          315 AMNVVCSSSDLAARCCEVAVIQVKSQLKRLA---RP--------------------MYSNPPVHGARIVANVVGNPALFD  371 (467)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~---~~--------------------~~~~~~~~~~~~~~~~L~~~~~~~  371 (467)
                      |++   .++++++.            +....   .+                    ....++...+.++..+++.  + .
T Consensus       216 ~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~--~-~  277 (393)
T 2huf_A          216 PVS---FSHRAVER------------YKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAM--A-C  277 (393)
T ss_dssp             EEE---ECHHHHHH------------HHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHH--H-H
T ss_pred             EEE---ECHHHHHH------------HhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHH--H-H
Confidence            986   56777776            44320   01                    1123445554444444421  1 0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC---cceEEec----CCCH-HHHHHHHHcccEEEeCC----
Q 012238          372 EWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ---IGMFSFT----GLNK-AQSDNMTNKWHVYMTKD----  439 (467)
Q Consensus       372 ~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~---~g~f~~~----~l~~-~~~~~ll~~~gI~v~~g----  439 (467)
                        ...+++.+++++++++++.+.|+ ++|    +++..+.   +++++++    +.+. ++.++|++++||.+.+|    
T Consensus       278 --~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~  350 (393)
T 2huf_A          278 --EEGLPALIARHEDCAKRLYRGLQ-DAG----FELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPT  350 (393)
T ss_dssp             --HHCHHHHHHHHHHHHHHHHHHHH-HTT----CCBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGG
T ss_pred             --HhCHHHHHHHHHHHHHHHHHHHH-HcC----CeeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccc
Confidence              11266788899999999999998 776    4555442   3434443    2344 44566666679999886    


Q ss_pred             --C--eEEe-cc-CChhhHHHHHHHHHHHHHhc
Q 012238          440 --G--RISL-AG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 --g--Ris~-~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                        +  ||++ +. .+++++++++++|+++++++
T Consensus       351 ~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~  383 (393)
T 2huf_A          351 AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAV  383 (393)
T ss_dssp             TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHc
Confidence              2  9999 52 26788999999999998764

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.96  E-value=2.1e-28  Score=244.62  Aligned_cols=315  Identities=11%  Similarity=0.043  Sum_probs=213.0

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh--------
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--------  174 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~--------  174 (467)
                      ++.+.+++.+.+.... ..|....+..++++.+++++....+.  ++++|++  |+||++++.++...+...        
T Consensus        43 ~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~i~~--~~ggt~a~~~~~~~~~~~~~~~~~~~  117 (397)
T 3f9t_A           43 LPITRKIVDIFLETNL-GDPGLFKGTKLLEEKAVALLGSLLNN--KDAYGHI--VSGGTEANLMALRCIKNIWREKRRKG  117 (397)
T ss_dssp             CTHHHHHHHHHTTCCT-TSGGGBHHHHHHHHHHHHHHHHHTTC--TTCEEEE--ESCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHhhcC-CCcccChhHHHHHHHHHHHHHHHhCC--CCCCEEE--ecCcHHHHHHHHHHHHHHHHhhhhhc
Confidence            6788888888775432 22222224444444444443332222  2678888  999999999984333221        


Q ss_pred             ---CCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHH
Q 012238          175 ---FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQW  251 (467)
Q Consensus       175 ---~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l  251 (467)
                         .+||+|+++.|+|..+...++..|++++.+|.+  .++.+|++.+++.+++  .+++++++++|+||||.+.+   +
T Consensus       118 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l  190 (397)
T 3f9t_A          118 LSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIK--EDYTIDEKFVKDAVED--YDVDGIIGIAGTTELGTIDN---I  190 (397)
T ss_dssp             CCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBC--TTSSBCHHHHHHHHHH--SCCCEEEEEBSCTTTCCBCC---H
T ss_pred             ccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeC--CCCcCCHHHHHHHHhh--cCCeEEEEECCCCCCCCCCC---H
Confidence               149999999999999999999999999999984  3578999999999984  16678888999999999987   5


Q ss_pred             HHHHHHHHhcCCeeEEeccCCCCCCCCCCC--------ChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCH
Q 012238          252 EKIADVIQEKNHIPFFDVAYQGFASGSLDN--------DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (467)
Q Consensus       252 ~~l~~~~~~~~~~li~Deay~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~  323 (467)
                      ++|.++|++||+++|+||+|.++..+....        ....   + .. ...+++.|++|.++ +|.|+||++  +.++
T Consensus       191 ~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~---~-~~-~~~~~~~s~~K~~~-~~~~~g~~~--~~~~  262 (397)
T 3f9t_A          191 EELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFD---F-SL-GVDSITIDPHKMGH-CPIPSGGIL--FKDI  262 (397)
T ss_dssp             HHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCS---G-GG-TCSEEECCTTTTTC-CCSSCEEEE--ESSG
T ss_pred             HHHHHHHHHhCCeEEEEccccchhhhhccccccccccccccc---c-cc-cCCeEEEccccccC-CCCCceEEE--EeCH
Confidence            578888999999999999998764321100        0000   1 12 34678899999876 778999986  5676


Q ss_pred             HHHhhhhhhhHHHHHHHHHhhccCcc-----------CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          324 DLAARCCEVAVIQVKSQLKRLARPMY-----------SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  392 (467)
Q Consensus       324 ~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~  392 (467)
                      .+.+.            +........           .+.+..++.++...+.        ...+++..++++++++++.
T Consensus       263 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~~~~~~~~~~~~~l~  322 (397)
T 3f9t_A          263 GYKRY------------LDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG--------REGQRKIVNECMENTLYLY  322 (397)
T ss_dssp             GGGGG------------TCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHh------------hccCCccccCCCccccccccccchHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHH
Confidence            66554            322211111           1123344444443332        2335677788889999999


Q ss_pred             HHhhhccCCCCCcccc-cCCcceEEecCC-CH-HHHHHHHHcccEEEeCCC-----eEEecc-CChhhHHHHHHHHHHHH
Q 012238          393 DSLSAKDKSGKDWSFI-LRQIGMFSFTGL-NK-AQSDNMTNKWHVYMTKDG-----RISLAG-LSLAKCEYLADAIIDSY  463 (467)
Q Consensus       393 ~~l~~~~g~~~~~~~~-~~~~g~f~~~~l-~~-~~~~~ll~~~gI~v~~gg-----Ris~~~-~~~~~i~~~~~~l~~~l  463 (467)
                      +.|+ ++|+    ... ++.++ ++|+.+ +. ++.+.+.+ +||.+.+++     ||+++. .+++++++++++|++++
T Consensus       323 ~~L~-~~g~----~~~~~~~~~-~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l  395 (397)
T 3f9t_A          323 KKLK-ENNF----KPVIEPILN-IVAIEDEDYKEVCKKLRD-RGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIK  395 (397)
T ss_dssp             HHHH-HTTC----CBSSCCSSS-EEEEECTTHHHHHHHHHH-TTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHH-HCCC----EEEcCCCcc-EEEEEeCCHHHHHHHHHh-CCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence            9999 7763    433 34444 444433 33 44555555 599998874     999873 37899999999999987


Q ss_pred             H
Q 012238          464 H  464 (467)
Q Consensus       464 ~  464 (467)
                      +
T Consensus       396 ~  396 (397)
T 3f9t_A          396 R  396 (397)
T ss_dssp             -
T ss_pred             C
Confidence            5

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.96  E-value=8.3e-29  Score=248.09  Aligned_cols=308  Identities=10%  Similarity=0.073  Sum_probs=217.1

Q ss_pred             chHHHHHHHHHHHhcCCCCcCCCC--cchHHHHHHHHHHHhCCCCcccccC-ceeeeecCCchhHHHHHHHHHHHhCCCC
Q 012238          102 VLDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGTGSLRLAAALIERYFPGA  178 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt~al~l~~~~l~~~~~gd  178 (467)
                      +++.+.+++.+.+.    ..|.+.  ....++|+++++++...      ++ +|++  |+||++++.++  +...+.+||
T Consensus        29 ~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~~~~------~~~~v~~--~~g~t~al~~~--~~~~~~~gd   94 (396)
T 2ch1_A           29 CSKRVLTAMTNTVL----SNFHAELFRTMDEVKDGLRYIFQTE------NRATMCV--SGSAHAGMEAM--LSNLLEEGD   94 (396)
T ss_dssp             CCHHHHHHTTSCCC----CTTCHHHHHHHHHHHHHHHHHHTCC------CSCEEEE--SSCHHHHHHHH--HHHHCCTTC
T ss_pred             CCHHHHHHhccccc----cCCChhHHHHHHHHHHHHHHHhCCC------CCcEEEE--CCcHHHHHHHH--HHHhcCCCC
Confidence            36778877655432    235442  34889999999997543      55 7888  99999999998  444467999


Q ss_pred             EEEEcCCCCcchH--HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012238          179 KVLISSPTWGNHK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (467)
Q Consensus       179 ~Vlv~~P~y~~~~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~  256 (467)
                      +|++++|+|..|.  ..++..|++++.++.+  .++.+|++.+++.+++  .+++++++++|+||||.+++   +++|++
T Consensus        95 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~---~~~i~~  167 (396)
T 2ch1_A           95 RVLIAVNGIWAERAVEMSERYGADVRTIEGP--PDRPFSLETLARAIEL--HQPKCLFLTHGDSSSGLLQP---LEGVGQ  167 (396)
T ss_dssp             EEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTSCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CTTHHH
T ss_pred             eEEEEcCCcccHHHHHHHHHcCCceEEecCC--CCCCCCHHHHHHHHHh--CCCCEEEEECCCCCCceecC---HHHHHH
Confidence            9999999999885  4778899999999984  3567999999999973  15678888999999999999   567888


Q ss_pred             HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHH
Q 012238          257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQ  336 (467)
Q Consensus       257 ~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~  336 (467)
                      +|+++|+++|+||+|. +....  .+   +    ......+++.|++|.++ .+.++|+++   .++++++.        
T Consensus       168 l~~~~~~~li~Dea~~-~g~~~--~~---~----~~~~~d~~~~s~~K~~~-~~~g~g~~~---~~~~~~~~--------  225 (396)
T 2ch1_A          168 ICHQHDCLLIVDAVAS-LCGVP--FY---M----DKWEIDAVYTGAQKVLG-APPGITPIS---ISPKALDV--------  225 (396)
T ss_dssp             HHHHTTCEEEEECTTT-BTTBC--CC---T----TTTTCCEEECCCC-CCC-CCSSCEEEE---ECHHHHHH--------
T ss_pred             HHHHcCCEEEEEcccc-ccCCc--cc---h----hhcCcCEEEEcCCcccc-CCCCeEEEE---ECHHHHHh--------
Confidence            8999999999999987 32111  11   1    11122466789999765 334568885   56666665        


Q ss_pred             HHHHHHhh-----------------------ccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          337 VKSQLKRL-----------------------ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  393 (467)
Q Consensus       337 ~~~~l~~~-----------------------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~  393 (467)
                          +...                       ......+++...+.++..+|..  +   ..+.+++++++++++++++.+
T Consensus       226 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~--~---~~~~~~~~~~~~~~~~~~l~~  296 (396)
T 2ch1_A          226 ----IRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQ--I---AEEGLENQIKRRIECAQILYE  296 (396)
T ss_dssp             ----HHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHH--H---HHHCHHHHHHHHHHHHHHHHH
T ss_pred             ----hhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHH--H---HHhhHHHHHHHHHHHHHHHHH
Confidence                2210                       0112234566666666655532  1   123467888999999999999


Q ss_pred             HhhhccCCCCCcccccCCcc----eEEec----CCCHH-HHHHHHHcccEEEeCC------C--eEEe-c-cCChhhHHH
Q 012238          394 SLSAKDKSGKDWSFILRQIG----MFSFT----GLNKA-QSDNMTNKWHVYMTKD------G--RISL-A-GLSLAKCEY  454 (467)
Q Consensus       394 ~l~~~~g~~~~~~~~~~~~g----~f~~~----~l~~~-~~~~ll~~~gI~v~~g------g--Ris~-~-~~~~~~i~~  454 (467)
                      .|+ ++|    +++..+.++    .++++    +.+.+ +.++|++++||.+.+|      +  ||++ + ..+++++++
T Consensus       297 ~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~  371 (396)
T 2ch1_A          297 GLG-KMG----LDIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQF  371 (396)
T ss_dssp             HHH-HHT----CCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHH
T ss_pred             HHH-HCC----CeeccCCccccCCceEEEEcCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHH
Confidence            999 776    456666543    24443    23444 4566666679999885      2  9998 4 337889999


Q ss_pred             HHHHHHHHHHhc
Q 012238          455 LADAIIDSYHNV  466 (467)
Q Consensus       455 ~~~~l~~~l~~~  466 (467)
                      ++++|+++++++
T Consensus       372 ~~~~l~~~l~~~  383 (396)
T 2ch1_A          372 YLYGFKESLKAT  383 (396)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.96  E-value=4e-28  Score=243.77  Aligned_cols=327  Identities=15%  Similarity=0.057  Sum_probs=224.0

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-CC-----CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeec
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-----NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~~-----~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (467)
                      +.++|..+.+   .+.++ +|.+.+++.+.+.. ..     ...|....+..++|+++++++..       +++|++  +
T Consensus        47 ~~i~~~~~~~---~~~~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-------~~~i~~--~  113 (401)
T 2bwn_A           47 DITVWCGNDY---LGMGQ-HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-------EAALVF--S  113 (401)
T ss_dssp             EEEECSCSCT---TSGGG-CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-------SEEEEE--S
T ss_pred             cEEEeeCCCc---ccCCC-CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC-------CcEEEE--C
Confidence            5688886543   12333 55788888887743 11     12355667899999999999642       467777  6


Q ss_pred             CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC-CCcEEEEeC
Q 012238          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLHG  236 (467)
Q Consensus       158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~i~i~  236 (467)
                      +|++ ++..+..++....+||+|+++.|+|..+...++..|++++.++.+       |++.+++.++... +++++++++
T Consensus       114 sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~~~~~~~v~~~  185 (401)
T 2bwn_A          114 SAYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAFE  185 (401)
T ss_dssp             CHHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEEE
T ss_pred             CcHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhccCCceEEEEe
Confidence            6665 655552222224589999999999999999999999999998761       7889998887543 467899999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcccCCCccce
Q 012238          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGA  315 (467)
Q Consensus       237 ~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~  315 (467)
                      +|+||||.+++   +++|+++|++||+++|+||+|....++.. .... . ..... ...+++++||||.++++|   ||
T Consensus       186 ~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~-g~~~-~-~~~~~~~~~~i~~~s~sK~~~~~G---G~  256 (401)
T 2bwn_A          186 SVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPR-GAGV-A-ERDGLMHRIDIFNGTLAKAYGVFG---GY  256 (401)
T ss_dssp             SBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTT-SCCH-H-HHHTCGGGCSEEEEESSSTTCSCC---EE
T ss_pred             cCcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCC-Ccee-e-eccCccccCcEEEeechhhccCCC---CE
Confidence            99999999998   56788889999999999999985444311 1111 1 11111 124688999999999888   99


Q ss_pred             EEEecCCHHHHhhhhhhhHHHHHHHHHhhccC--ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          316 MNVVCSSSDLAARCCEVAVIQVKSQLKRLARP--MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  393 (467)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~  393 (467)
                      ++   .++++++.            +......  ...+.+.+.+.++..+++..   +  ...+++.+++++++++++.+
T Consensus       257 ~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~~~a~~~al~~~---~--~~~~~~~~~~~~~~~~~l~~  316 (401)
T 2bwn_A          257 IA---ASARMVDA------------VRSYAPGFIFSTSLPPAIAAGAQASIAFL---K--TAEGQKLRDAQQMHAKVLKM  316 (401)
T ss_dssp             EE---ECHHHHHH------------HHHHCHHHHTSBCCCHHHHHHHHHHHHHH---T--SHHHHHHHHHHHHHHHHHHH
T ss_pred             Ee---cCHHHHHH------------HHHhCcCceecCCCCHHHHHHHHHHHHHH---H--hcccHHHHHHHHHHHHHHHH
Confidence            85   67777776            3322111  12233445555555544211   0  01246778889999999999


Q ss_pred             HhhhccCCCCCcccccCCcceEEecCCC-----HHHHHHHHHcccEEEeCC-------C----eEEecc-CChhhHHHHH
Q 012238          394 SLSAKDKSGKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD-------G----RISLAG-LSLAKCEYLA  456 (467)
Q Consensus       394 ~l~~~~g~~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g-------g----Ris~~~-~~~~~i~~~~  456 (467)
                      .|+ ++|    +++..+.++ ++|+.+.     .++.+.+++++||.+.++       |    ||+++. .+++++++++
T Consensus       317 ~L~-~~g----~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~  390 (401)
T 2bwn_A          317 RLK-ALG----MPIIDHGSH-IVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLV  390 (401)
T ss_dssp             HHH-HHT----CCBCCCSSS-CEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHH
T ss_pred             HHH-HCC----CcccCCCCC-eEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHH
Confidence            998 776    466666666 5565442     234556655679998653       2    888873 3789999999


Q ss_pred             HHHHHHHHhc
Q 012238          457 DAIIDSYHNV  466 (467)
Q Consensus       457 ~~l~~~l~~~  466 (467)
                      ++|+++++++
T Consensus       391 ~~l~~~~~~~  400 (401)
T 2bwn_A          391 HAMDLLWARC  400 (401)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHHHhc
Confidence            9999988764

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.96  E-value=3.8e-28  Score=241.87  Aligned_cols=319  Identities=13%  Similarity=0.042  Sum_probs=217.2

Q ss_pred             CCCCCCCCchHHHHHHHHHHHhcC---CCCcCCC----CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHH
Q 012238           94 RTEELQPYVLDVVKKAENLMLERG---ENKEYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRL  166 (467)
Q Consensus        94 ~d~~~~p~~~~~v~~a~~~~~~~~---~~~~Y~~----~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l  166 (467)
                      +|.++..++++.+++++.+.+...   ....|..    ..+..++|+++++++...      ++++++  |+||++++.+
T Consensus         4 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~------~~~v~~--~~g~t~a~~~   75 (382)
T 4eb5_A            4 FDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG------GGTVVF--TSGATEANNL   75 (382)
T ss_dssp             CBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCT------TEEEEE--ESSHHHHHHH
T ss_pred             eccCCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCC------CCeEEE--cCchHHHHHH
Confidence            444444556899999998887531   1112432    246789999999997532      578888  9999999999


Q ss_pred             HHHHHHHh----CCCCEEEEcCCCCcchHHHHh---hCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          167 AAALIERY----FPGAKVLISSPTWGNHKNIFN---DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       167 ~~~~l~~~----~~gd~Vlv~~P~y~~~~~~~~---~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +..  ...    .+||+|++++|+|+.+...++   ..|++++.++++  .++.+|++.+++.++   ++++++++++|+
T Consensus        76 ~~~--~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~  148 (382)
T 4eb5_A           76 AII--GYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG--KYGEVDVSFIDQKLR---DDTILVSVQHAN  148 (382)
T ss_dssp             HHH--HHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBC--TTSCBCHHHHHHHCC---TTEEEEECCSBC
T ss_pred             HHH--HHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccC--CCCccCHHHHHHHhc---CCCeEEEEeccC
Confidence            843  334    689999999999998876664   479999999984  356799999999987   467899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||.+++.   ++|+++|+++|++ |+|++|.. ..  ...+   +..+    ..++++.|+||.+|++|  +||++  
T Consensus       149 nptG~~~~l---~~i~~l~~~~~~~-i~D~a~~~-g~--~~~~---~~~~----~~di~~~s~sK~~g~~g--~G~~~--  210 (382)
T 4eb5_A          149 NEIGTIQPV---EEISEVLAGKAAL-HIDATASV-GQ--IEVD---VEKI----GADMLTISSNDIYGPKG--VGALW--  210 (382)
T ss_dssp             TTTCBBCCH---HHHHHHHTTSSEE-EEECTTTB-TT--BCCC---HHHH----TCSEEEEETGGGTCCSS--CEEEE--
T ss_pred             CCccccCCH---HHHHHHHHHCCCE-EEEcchhc-CC--cccC---cccc----CCCEEEeehHHhcCCCc--eEEEE--
Confidence            999999985   5788889999999 99999872 21  1111   2111    34688999999988767  68886  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHh---hccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKR---LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      +.++..+..        .   +..   ........++...+.++..++..      +.+.+++++++++++++++.+.|+
T Consensus       211 ~~~~~~l~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~al~~------~~~~~~~~~~~~~~~~~~l~~~L~  273 (382)
T 4eb5_A          211 IRKEAKLQP--------V---ILGGGQENGLRSGSENVPSIVGFGKAAEI------TAMEWREEAERLRRLRDRIIDNVL  273 (382)
T ss_dssp             EETTCCCCC--------S---SCSSCTGGGTSCSCCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EccccccCc--------e---ecCCCccccccCCCccHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHh
Confidence            333311111        0   100   01111233444444444444421      123467888999999999999998


Q ss_pred             hccCCCCCcccccCC----cceEEe--cCCCHHHHHHHHHcccEEEeCC-------------------------C--eEE
Q 012238          397 AKDKSGKDWSFILRQ----IGMFSF--TGLNKAQSDNMTNKWHVYMTKD-------------------------G--RIS  443 (467)
Q Consensus       397 ~~~g~~~~~~~~~~~----~g~f~~--~~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ris  443 (467)
                       ++.  + +++..+.    ++++.+  .+.+.+.+.+.+.++||.+.+|                         +  ||+
T Consensus       274 -~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~  349 (382)
T 4eb5_A          274 -KIE--E-SYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLT  349 (382)
T ss_dssp             -TST--T-EEECSCSSSBCTTEEEEEETTSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEE
T ss_pred             -hCC--C-eEEeCCcccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEE
Confidence             752  1 4555543    334322  2345544443444579998874                         3  999


Q ss_pred             ecc-CChhhHHHHHHHHHHHHHhc
Q 012238          444 LAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       444 ~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ++. .+++++++++++|+++++++
T Consensus       350 ~~~~~~~~~i~~~~~~l~~~~~~~  373 (382)
T 4eb5_A          350 LGRYNTDEDVDRLLEVLPGVIERL  373 (382)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH
Confidence            884 37899999999999988754

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.96  E-value=4.7e-28  Score=245.54  Aligned_cols=325  Identities=12%  Similarity=0.044  Sum_probs=228.0

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-CC-CCcCC----CCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-NKEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~~-~~~Y~----~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (467)
                      +.+.|||+.|.|.   +.+ .++.+.+++.+.+.. +. ...|.    +.....++++.+++++. .      + +.++ 
T Consensus        63 g~~~id~~~~~~l---g~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g-~------~-~~i~-  129 (427)
T 2w8t_A           63 GKDTILLGTYNYM---GMT-FDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYG-T------T-GAIV-  129 (427)
T ss_dssp             TEEEEECSCCCTT---CGG-GCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHT-C------S-EEEE-
T ss_pred             CceEEEEECcccc---cCC-CCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhC-C------C-ceEE-
Confidence            3578999999751   322 267788888887643 21 12222    23456899999999973 2      2 3444 


Q ss_pred             ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCC-CcEEEE
Q 012238          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG-GSFILL  234 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~-~~~~i~  234 (467)
                       +.+|++++..+  +...+.+||.|+++.|+|..+...++..|++++.++.       +|++.+++.+++..+ ++++|+
T Consensus       130 -~~sGs~a~~~a--l~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~  199 (427)
T 2w8t_A          130 -FSTGYMANLGI--ISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPKEPAKLVV  199 (427)
T ss_dssp             -ESCHHHHHHHH--HHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEE
T ss_pred             -ecCcHHHHHHH--HHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccCCCCeEEE
Confidence             57777888876  3344679999999999999999999999998887763       689999999985332 678999


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcccCCCcc
Q 012238          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERI  313 (467)
Q Consensus       235 i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~Ri  313 (467)
                      +++++||||.+++   +++|+++|++||+++|+||+|..+.++..  .. ........ .+.++++.||||.+|++|   
T Consensus       200 ~~~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~--g~-~~~~~~~~~~~~di~~~s~sK~~g~~g---  270 (427)
T 2w8t_A          200 LEGVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPN--GR-GVYEAQGLEGQIDFVVGTFSKSVGTVG---  270 (427)
T ss_dssp             EESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT--SC-CHHHHTTCTTCCSEEEEESSSTTCSCC---
T ss_pred             EcCCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC--CC-chHhhcCCCcCCcEEEecchhhhccCC---
Confidence            9999999999998   56888889999999999999998876521  11 12222221 235899999999999777   


Q ss_pred             ceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC--ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012238          314 GAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP--MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL  391 (467)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l  391 (467)
                      ||++   +++++++.            +......  ...+.+...+.++..+|+..       +++++.+++++++++++
T Consensus       271 G~v~---~~~~l~~~------------l~~~~~~~~~~~~~~~~~~aa~~~al~~~-------~~~~~~~~~~~~~~~~l  328 (427)
T 2w8t_A          271 GFVV---SNHPKFEA------------VRLACRPYIFTASLPPSVVATATTSIRKL-------MTAHEKRERLWSNARAL  328 (427)
T ss_dssp             EEEE---ECCTTGGG------------GGGTCHHHHSSCCCCHHHHHHHHHHHHHH-------TSCHHHHHHHHHHHHHH
T ss_pred             CEEE---eCHHHHHH------------HHHhcccccccCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHH
Confidence            9985   56777776            4333111  12234444444444444321       11357788899999999


Q ss_pred             HHHhhhccCCCCCcccc-cCCcceEEecCCC-----HHHHHHHHHcccEEEeCC---------C--eEEecc-CChhhHH
Q 012238          392 FDSLSAKDKSGKDWSFI-LRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD---------G--RISLAG-LSLAKCE  453 (467)
Q Consensus       392 ~~~l~~~~g~~~~~~~~-~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g---------g--Ris~~~-~~~~~i~  453 (467)
                      .+.|+ ++|    +.+. ++..+.++|+.+.     .++.+.|+++ ||.+.++         +  ||+++. .++++++
T Consensus       329 ~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~  402 (427)
T 2w8t_A          329 HGGLK-AMG----FRLGTETCDSAIVAVMLEDQEQAAMMWQALLDG-GLYVNMARPPATPAGTFLLRCSICAEHTPAQIQ  402 (427)
T ss_dssp             HHHHH-HHT----CEESCSSCCSSEEEEEESSHHHHHHHHHHHHHT-TEECEEECTTTSCTTCEEEEEECCTTCCHHHHH
T ss_pred             HHHHH-HcC----CcccCCCCCCCEEEEEECCHHHHHHHHHHHHHC-CeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHH
Confidence            99999 776    4555 4413446665432     2345666665 9999875         1  888875 3789999


Q ss_pred             HHHHHHHHHHHhc
Q 012238          454 YLADAIIDSYHNV  466 (467)
Q Consensus       454 ~~~~~l~~~l~~~  466 (467)
                      +++++|+++++++
T Consensus       403 ~~~~~l~~~l~~~  415 (427)
T 2w8t_A          403 TVLGMFQAAGRAV  415 (427)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998754

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.96  E-value=1.1e-28  Score=248.09  Aligned_cols=328  Identities=13%  Similarity=0.062  Sum_probs=221.9

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC-CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~-~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +...+||+.|.+.+.-+.  .+|.+.+++.+.+..... ..+.+.....++++.+++++ +       .+++++  |+||
T Consensus        38 g~~~lD~~~~~~~~~lg~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~-------~~~v~~--~~gg  105 (406)
T 4adb_A           38 GKEYIDFAGGIAVNALGH--AHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDAT-F-------ADRVFF--CNSG  105 (406)
T ss_dssp             CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHS-S-------CSEEEE--ESSH
T ss_pred             CCEEEECCCchhhcccCC--CCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhC-C-------CCeEEE--eCcH
Confidence            357899999854222333  368899999888754211 12224556788888888884 2       348888  9999


Q ss_pred             hhHHHHHHHHHHHh-----CCC-CEEEEcCCCCcchHHHHhhCCC-------------CeEEeeeecCCCCCCChhhHHH
Q 012238          161 TGSLRLAAALIERY-----FPG-AKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYDPKTVGLDFEGMIA  221 (467)
Q Consensus       161 t~al~l~~~~l~~~-----~~g-d~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~d~~~l~~  221 (467)
                      ++|+.++...+...     .+| |+|++++|+|..+...+...+.             .+..+|.       .|++.+++
T Consensus       106 ~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~  178 (406)
T 4adb_A          106 AEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINSASA  178 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHHHHH
Confidence            99999984332111     055 9999999999988555444343             2222222       47888888


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012238          222 DIKAAPGGSFILLHGCAHNPTGIDP--TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (467)
Q Consensus       222 ~l~~~~~~~~~i~i~~p~NPTG~~~--~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (467)
                      .++   +++++++++ |+||||.++  +.+++++|+++|++||+++|+||+|.++.+.+.   .... .......+++  
T Consensus       179 ~l~---~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~-~~~~~~~d~~--  248 (406)
T 4adb_A          179 LID---DSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE---LYAY-MHYGVTPDLL--  248 (406)
T ss_dssp             TCS---TTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSHH-HHHTCCCSEE--
T ss_pred             Hhc---CCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch---hHHH-HhcCCCCCEE--
Confidence            886   578888877 999999998  999999999999999999999999998865431   1122 1223334444  


Q ss_pred             ecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM  379 (467)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~  379 (467)
                       +|||.++ +|+|+||++   .++++++.            +.........+.+.+.+.++..+|+...        .++
T Consensus       249 -t~sK~~~-~G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~~--------~~~  303 (406)
T 4adb_A          249 -TTAKALG-GGFPVGALL---ATEECARV------------MTVGTHGTTYGGNPLASAVAGKVLELIN--------TPE  303 (406)
T ss_dssp             -EECGGGG-TTSCCEEEE---ECHHHHHT------------CCTTSSCCSSTTCHHHHHHHHHHHHHHS--------SHH
T ss_pred             -Eechhhc-CCCCeEEEE---EcHHHHhh------------hccCCcCCCCCCCHHHHHHHHHHHHHHH--------hcC
Confidence             6799999 999999985   77887776            5554444455677788877776654211        135


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCC-CCcccccCCcceEEecCC------CH-HHHHHHHHcccEEEeCCC----eEEec-c
Q 012238          380 MAGRIKNVRQKLFDSLSAKDKSG-KDWSFILRQIGMFSFTGL------NK-AQSDNMTNKWHVYMTKDG----RISLA-G  446 (467)
Q Consensus       380 ~~~~~~~~r~~l~~~l~~~~g~~-~~~~~~~~~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~gg----Ris~~-~  446 (467)
                      ..++++++++++.+.|+ +++.. ..+.... ..|.++|+.+      +. ++.+.+++ +||.+.++|    ||+++ .
T Consensus       304 ~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~iRi~~~~~  380 (406)
T 4adb_A          304 MLNGVKQRHDWFVERLN-TINHRYGLFSEVR-GLGLLIGCVLNADYAGQAKQISQEAAK-AGVMVLIAGGNVVRFAPALN  380 (406)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHHHCCEEEEE-EETTEEEEEECTTTTTCHHHHHHHHHH-TTEECEESSTTEEEECCCTT
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHhCCCceEEE-EEEEEEEEEEeCCcHHHHHHHHHHHHH-CCcEEeecCCCeEEEECCCC
Confidence            66677777788877777 54210 0011122 2344555422      23 44556665 599999885    88533 2


Q ss_pred             CChhhHHHHHHHHHHHHHhc
Q 012238          447 LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       447 ~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .+++++++++++|+++++++
T Consensus       381 ~~~e~i~~~~~~l~~~l~~~  400 (406)
T 4adb_A          381 VSEEEVTTGLDRFAAACEHF  400 (406)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHH
Confidence            38899999999999998754

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.96  E-value=3.9e-28  Score=245.46  Aligned_cols=324  Identities=14%  Similarity=0.079  Sum_probs=223.2

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHh--cCCC--------CcCCCCcchHHHHHHHHHHHhCCCCcccccCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE--RGEN--------KEYLPIEGLAAFNKVTAELLFGADNSVLKEQR  151 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~--~~~~--------~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~  151 (467)
                      +++.|.|..+.+    +  ++++.+.+++.+.+.  ....        ..|....+..++++.+++++...      +++
T Consensus        20 ~~~~iyld~~~~----~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~------~~~   87 (423)
T 3lvm_A           20 MKLPIYLDYSAT----T--PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD------PRE   87 (423)
T ss_dssp             CCSSEECBTTTC----C--CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC------GGG
T ss_pred             cCCCEeecCCCc----C--CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCC------CCe
Confidence            357788876654    3  347889998887765  2110        00111235688999999997542      679


Q ss_pred             eeeeecCCchhHHHHHHHHHHH-h-CCCCEEEEcCCCCcchHHHH---hhCCCCeEEeeeecCCCCCCChhhHHHHHHcC
Q 012238          152 VATVQGLSGTGSLRLAAALIER-Y-FPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAA  226 (467)
Q Consensus       152 i~~~~t~ggt~al~l~~~~l~~-~-~~gd~Vlv~~P~y~~~~~~~---~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~  226 (467)
                      |++  |+||++|+.++...+.. + .+||+|+++.|+|+.+...+   +..|++++.++.+  .++.+|++.+++.++  
T Consensus        88 v~~--~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~--  161 (423)
T 3lvm_A           88 IVF--TSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQ--RNGIIDLKELEAAMR--  161 (423)
T ss_dssp             EEE--ESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCC--TTSCCCHHHHHHHCC--
T ss_pred             EEE--eCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccC--CCCccCHHHHHHhcC--
Confidence            999  99999999998433221 1 27999999999999987776   4559999999884  367789999999997  


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc
Q 012238          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (467)
Q Consensus       227 ~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (467)
                       ++++++++++|+||||.+++   +++|+++|+++|++||+||+|......   .+.       ......+++.|+||.+
T Consensus       162 -~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~---~~~-------~~~~~di~~~s~sK~~  227 (423)
T 3lvm_A          162 -DDTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLP---IDL-------SQLKVDLMSFSGHKIY  227 (423)
T ss_dssp             -TTEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC---CCT-------TTSCCSEEEEESTTTT
T ss_pred             -CCcEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCCC---cCh-------hhcCCCEEEechHHhc
Confidence             57889999999999999999   556888899999999999997643221   111       1113468899999999


Q ss_pred             ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhcc-------CccCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238          307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLAR-------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEM  379 (467)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~  379 (467)
                      |++|  +||++   .+++.++.            +.....       .....++...+.++..++.   .   +.+.+++
T Consensus       228 g~~g--~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~---~---~~~~~~~  284 (423)
T 3lvm_A          228 GPKG--IGALY---VRRKPRVR------------IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYR---I---AKEEMAT  284 (423)
T ss_dssp             SCSS--CEEEE---ECBTTBCC------------CCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHH---H---HHHHHHH
T ss_pred             CCCC--eEEEE---EeccccCC------------CCccccCCcccccccCCCCCHHHHHHHHHHHH---H---HHHHHHH
Confidence            8777  89986   44444444            332211       1122344444444444432   1   1233678


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCcccccCCc----ceE-Eec-CCCHHHHHHHHHcccEEEeCC--------------
Q 012238          380 MAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQI----GMF-SFT-GLNKAQSDNMTNKWHVYMTKD--------------  439 (467)
Q Consensus       380 ~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~----g~f-~~~-~l~~~~~~~ll~~~gI~v~~g--------------  439 (467)
                      .+++++++++++.+.|+ ++.   ++.+..+.+    +++ +++ +.+.+.+.+.+.+  |.+.+|              
T Consensus       285 ~~~~~~~~~~~l~~~L~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~  358 (423)
T 3lvm_A          285 EMERLRGLRNRLWNGIK-DIE---EVYLNGDLEHGAPNILNVSFNYVEGESLIMALKD--LAVSSGSACTSASLEPSYVL  358 (423)
T ss_dssp             HHHHHHHHHHHHHHHHT-TST---TEEEESCSTTBCTTEEEEEETTSCHHHHHHHTTT--EECBCCCC-----CCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHh-cCC---CEEEeCCccccCCCeEEEEeCCCCHHHHHHHHhh--heeccCccccCCCccccHHH
Confidence            89999999999999998 762   145554443    332 222 4566555555554  777764              


Q ss_pred             -----------C--eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          440 -----------G--RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 -----------g--Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                                 +  ||+++. .+++++++++++|+++++++
T Consensus       359 ~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~  399 (423)
T 3lvm_A          359 RALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRL  399 (423)
T ss_dssp             HHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence                       3  999874 36799999999999998754

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.96  E-value=9.8e-28  Score=240.20  Aligned_cols=327  Identities=12%  Similarity=0.069  Sum_probs=225.1

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC-CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~-~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +.+.+||+.+.+...-+.  .+|.+.+++.+.+..... ..+.+..-..++++.+++++.        ++++++  ++||
T Consensus        35 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--------~~~v~~--~~~g  102 (392)
T 3ruy_A           35 GNRYMDLLSAYSAVNQGH--RHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTN--------KEMVLP--MNTG  102 (392)
T ss_dssp             CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHT--------CSEEEE--ESSH
T ss_pred             CCEEEEcCCChhhhccCC--CCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC--------CCEEEE--eCcH
Confidence            347899998865222122  368899999888754211 111244557788899998853        468888  9999


Q ss_pred             hhHHHHHHHHHHHh--------CCCCEEEEcCCCCcchHHHHhhCCCC-------------eEEeeeecCCCCCCChhhH
Q 012238          161 TGSLRLAAALIERY--------FPGAKVLISSPTWGNHKNIFNDARVP-------------WSEYRYYDPKTVGLDFEGM  219 (467)
Q Consensus       161 t~al~l~~~~l~~~--------~~gd~Vlv~~P~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~~d~~~l  219 (467)
                      ++|+.++..++...        ..+|+|+++.|+|..+...+...+..             +..++.       .|++.+
T Consensus       103 t~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l  175 (392)
T 3ruy_A          103 AEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLEAL  175 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHHHH
Confidence            99999984433222        23679999999997665544333222             222222       389999


Q ss_pred             HHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238          220 IADIKAAPGGSFILLHGCAHNPTGIDPTPEQ-WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (467)
Q Consensus       220 ~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~-l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (467)
                      ++.++   ++++++++++|+||||.+++.++ +++|+++|++||+++|+||+|.++...+.   .... .......+++ 
T Consensus       176 ~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~---~~~~-~~~~~~~d~~-  247 (392)
T 3ruy_A          176 KAAIT---PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK---VFAC-DWDNVTPDMY-  247 (392)
T ss_dssp             HHHCC---TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSS---SSGG-GGGTCCCSEE-
T ss_pred             HHHhc---cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcccc---chhh-hccCCCCCEE-
Confidence            99987   67889999999999999997655 99999999999999999999988765421   1111 1112223433 


Q ss_pred             EecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238          299 AQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       299 ~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l  377 (467)
                        +|||.++ +| +|+||++   .++++++.            +.........+.+.+.+.++..+|+..      ..  
T Consensus       248 --~~SK~l~-gG~~~~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~--  301 (392)
T 3ruy_A          248 --ILGKALG-GGVFPISCAA---ANRDILGV------------FEPGSHGSTFGGNPLACAVSIAALEVL------EE--  301 (392)
T ss_dssp             --EECGGGG-TTTSCCEEEE---ECHHHHTT------------CCTTSSCCSSTTCHHHHHHHHHHHHHH------HH--
T ss_pred             --EEchhhh-CChhhhEEEE---ECHHHHhh------------hccCCcCCCCCCCHHHHHHHHHHHHHH------Hh--
Confidence              6789876 46 9999995   67777776            555444445567777877777666421      11  


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEec--CCCHHHHHHHHHcccEEEeCCC----eEEecc-CChh
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT--GLNKAQSDNMTNKWHVYMTKDG----RISLAG-LSLA  450 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~--~l~~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~~  450 (467)
                      ++.+++++++++++.+.|+ +++.+. +....+.++++.|.  +...++.+.++ ++||.+.+++    ||+++. .+++
T Consensus       302 ~~~~~~~~~~~~~l~~~L~-~~~~~~-~~~~~~~g~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~~iRi~~~~~~~~~  378 (392)
T 3ruy_A          302 EKLTERSLQLGEKLVGQLK-EIDNPM-ITEVRGKGLFIGIELNEPARPYCEQLK-AAGLLCKETHENVIRIAPPLVISEE  378 (392)
T ss_dssp             TTHHHHHHHHHHHHHHHHT-TCCCTT-EEEEEEETTEEEEEESSCSHHHHHHHH-TTTEECCCBTTTEEEECCCTTCCHH
T ss_pred             hhHHHHHHHHHHHHHHHHH-HhcCCC-ceEEEeeeeEEEEEEcchHHHHHHHHH-HCCcEEecCCCCEEEEECCCCCCHH
Confidence            4677888999999999998 775322 34455666666554  22345566665 5799999985    887432 3789


Q ss_pred             hHHHHHHHHHHHHH
Q 012238          451 KCEYLADAIIDSYH  464 (467)
Q Consensus       451 ~i~~~~~~l~~~l~  464 (467)
                      ++++++++|+++++
T Consensus       379 ~i~~~~~~l~~~l~  392 (392)
T 3ruy_A          379 DLEWAFQKIKAVLS  392 (392)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999998863

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.96  E-value=1.3e-27  Score=240.88  Aligned_cols=320  Identities=12%  Similarity=0.007  Sum_probs=221.2

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcC----CCCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEY----LPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y----~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (467)
                      +.+.|||+...|.   +.+. +|.+.+++.+.+...  ....|    .......++++++++++...        ..++ 
T Consensus        58 g~~~ld~~s~~~l---~~~~-~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~--------~~i~-  124 (409)
T 3kki_A           58 SPDDIILQSNDYL---ALAN-HPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFD--------ECLL-  124 (409)
T ss_dssp             CTTSEECCCSCTT---CCTT-CHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCS--------EEEE-
T ss_pred             CCceEEeeccCcc---CCcC-CHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCC--------eEEE-
Confidence            4578999877652   3333 678888888877541  11122    22344678999999996432        2334 


Q ss_pred             ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i  235 (467)
                       +.+|++++..+  +...+.+||.|+++.|+|..+...++..|++++.++.       .|++.+++.+++  .+++++++
T Consensus       125 -~~sGt~a~~~~--l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~--~~~~~vi~  192 (409)
T 3kki_A          125 -SQSGWNANVGL--LQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQR--HGPGIIVV  192 (409)
T ss_dssp             -ESCHHHHHHHH--HHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHH--HCSCEEEE
T ss_pred             -ecchHHHHHHH--HHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHh--cCCeEEEE
Confidence             46668888876  4455779999999999999999999999999887754       689999999985  24578889


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcccCCCccc
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIG  314 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG  314 (467)
                      ++|+||||.+++   +++|+++|++||++||+||+|.+..++..  ..... ..... .+.++++.|+||.++++|   |
T Consensus       193 ~~~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~--g~~~~-~~~~~~~~~di~~~s~sK~~~~~g---g  263 (409)
T 3kki_A          193 DSIYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPN--GAGLL-AELGLTREVHFMTASLAKTFAYRA---G  263 (409)
T ss_dssp             ESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG--GCCHH-HHHTCGGGCSEEEEESSSTTCSSC---E
T ss_pred             CCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCC--CCcch-hhcCCCCCCCEEEeecchhhCCCc---e
Confidence            999999999999   66888889999999999999988555421  11111 22121 134588999999999664   8


Q ss_pred             eEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc--cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          315 AMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  392 (467)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~  392 (467)
                      |++   .++++++.            +.......  ....+...+.++...++   .    .++.++.+++++++++++.
T Consensus       264 ~v~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~aa~~aal~---~----~~~~~~~~~~~~~~~~~l~  321 (409)
T 3kki_A          264 AIW---CNNEVNRC------------VPFISYPAIFSSTLLPYEAAGLETTLE---I----IESADNRRQHLDRMARKLR  321 (409)
T ss_dssp             EEE---ESSSGGGT------------HHHHCHHHHHSBCCCHHHHHHHHHHHH---H----HHHCHHHHHHHHHHHHHHH
T ss_pred             EEE---ECHHHHHH------------HHHhCcCccccCCCcHHHHHHHHHHHH---H----HhcCHHHHHHHHHHHHHHH
Confidence            885   67777776            33322111  22344444444444432   1    1122578888999999999


Q ss_pred             HHhhhccCCCCCcccccCCcceEEecCC-----CHHHHHHHHHcccEEEeC-------CC----eEEecc-CChhhHHHH
Q 012238          393 DSLSAKDKSGKDWSFILRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTK-------DG----RISLAG-LSLAKCEYL  455 (467)
Q Consensus       393 ~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~-------gg----Ris~~~-~~~~~i~~~  455 (467)
                      +.|+ ++|    +.+. + .+.++|+.+     ..++.+.++++ ||.+.+       .|    ||+++. .++++++++
T Consensus       322 ~~L~-~~g----~~~~-~-~~~~~~~~~~~~~~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~  393 (409)
T 3kki_A          322 IGLS-QLG----LTIR-S-ESQIIGLETGDERNTEKVRDYLESN-GVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKI  393 (409)
T ss_dssp             HHHH-TTT----CCCC-C-SSSEEEEEEESHHHHHHHHHHHHHT-TEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHH
T ss_pred             HHHH-HcC----CccC-C-CCCEEEEEeCCHHHHHHHHHHHHHC-CceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHH
Confidence            9999 876    4444 3 455666543     12346666665 999853       22    899863 378999999


Q ss_pred             HHHHHHHHHh
Q 012238          456 ADAIIDSYHN  465 (467)
Q Consensus       456 ~~~l~~~l~~  465 (467)
                      +++|+++++.
T Consensus       394 ~~~l~~~l~~  403 (409)
T 3kki_A          394 IEVCSDAVNY  403 (409)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999999875

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.96  E-value=2.3e-28  Score=240.62  Aligned_cols=315  Identities=13%  Similarity=0.020  Sum_probs=211.8

Q ss_pred             chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEE
Q 012238          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL  181 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vl  181 (467)
                      +++.+++++.+.+..  ...|....+..++|+++++++...      ++++++  |+||++++.++  +...+.+||+|+
T Consensus        12 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~------~~~i~~--~~g~t~a~~~~--~~~~~~~gd~vl   79 (352)
T 1iug_A           12 LHPKALEALARPQLH--HRTEAAREVFLKARGLLREAFRTE------GEVLIL--TGSGTLAMEAL--VKNLFAPGERVL   79 (352)
T ss_dssp             CCHHHHHHHHSCCCC--TTSHHHHHHHHHHHHHHHHHHTCS------SEEEEE--ESCHHHHHHHH--HHHHCCTTCEEE
T ss_pred             CCHHHHHHhccCCCC--ccCHHHHHHHHHHHHHHHHHhCCC------CceEEE--cCchHHHHHHH--HHhccCCCCeEE
Confidence            378899888776532  122222356789999999997532      578888  99999999998  444467999999


Q ss_pred             EcCCCCcchH--HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 012238          182 ISSPTWGNHK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ  259 (467)
Q Consensus       182 v~~P~y~~~~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~  259 (467)
                      ++.|+|+.+.  ..++..|++++.++++  .++.+|++.+++      ++++++++++|+||||.+++.   ++|.++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~------~~~~~v~~~~~~nptG~~~~l---~~i~~l~~  148 (352)
T 1iug_A           80 VPVYGKFSERFYEIALEAGLVVERLDYP--YGDTPRPEDVAK------EGYAGLLLVHSETSTGALADL---PALARAFK  148 (352)
T ss_dssp             EEECSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCTTTSCC------SSCSEEEEESEETTTTEECCH---HHHHHHHH
T ss_pred             EEeCCchhHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHhc------cCCcEEEEEEecCCcceecCH---HHHHHHHH
Confidence            9999998865  4556789999999984  345689888866      245688889999999999984   57788899


Q ss_pred             hc--CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCcc-CcccCCCccceEEEecCCHHHHhhhhhhh-HH
Q 012238          260 EK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK-NLGLYAERIGAMNVVCSSSDLAARCCEVA-VI  335 (467)
Q Consensus       260 ~~--~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK-~~~~~G~RiG~~~~v~~~~~~~~~~~~~~-~~  335 (467)
                      ++  |+++|+||+|....   ...+.       ......+++.|+|| .++++|  +||++   .+++.++...... +.
T Consensus       149 ~~~~~~~li~D~a~~~~~---~~~~~-------~~~~~d~~~~s~~K~~~~~~g--~G~~~---~~~~~~~~~~~~~~~~  213 (352)
T 1iug_A          149 EKNPEGLVGADMVTSLLV---GEVAL-------EAMGVDAAASGSQKGLMCPPG--LGFVA---LSPRALERLKPRGYYL  213 (352)
T ss_dssp             HHCTTCEEEEECTTTBTT---BCCCS-------GGGTCSEEEEESSSTTCCCSC--EEEEE---ECHHHHHTCCCCSSTT
T ss_pred             hhCCCCEEEEECCccccC---cceec-------cccCeeEEEecCcccccCCCc--eeEEE---ECHHHHHHhhCCCcee
Confidence            99  99999999976211   11111       11124578999999 555445  79986   4565543200000 00


Q ss_pred             HHHHHHHhh-ccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC-cc
Q 012238          336 QVKSQLKRL-ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ-IG  413 (467)
Q Consensus       336 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~-~g  413 (467)
                      .+...+... ......+++...+.++..++...      .+++++.+++++++++++.+.|+ ++|    +++..+. .+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~  282 (352)
T 1iug_A          214 DLARELKAQKEGESAWTPAINLVLAVAAVLEEV------LPRLEEHLALKAWQNALLYGVGE-EGG----LRPVPKRFSP  282 (352)
T ss_dssp             CHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH------GGGHHHHHHHHHHHHHHHHHHHH-HTT----CEESCSSBCT
T ss_pred             eHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH-HCC----CcccccccCC
Confidence            000001111 11123345555555555444321      12256788899999999999999 765    4665553 45


Q ss_pred             eEEecC----CCHHH-HHHHHHcccEEEeCC------C--eEEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238          414 MFSFTG----LNKAQ-SDNMTNKWHVYMTKD------G--RISLAGL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       414 ~f~~~~----l~~~~-~~~ll~~~gI~v~~g------g--Ris~~~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                      .++|+.    .+.+. .+++. ++||.+.+|      +  ||+++.. +++++++++++|+++++++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  348 (352)
T 1iug_A          283 AVAAFYLPEGVPYARVKEAFA-QRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI  348 (352)
T ss_dssp             TCEEEECCTTCCHHHHHHHHH-TTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHH-HCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence            555543    34444 55555 459999876      2  9998854 5799999999999998764

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.96  E-value=5.7e-28  Score=238.89  Aligned_cols=319  Identities=15%  Similarity=0.034  Sum_probs=221.0

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC-C-cchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-I-EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~-~-~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      ++++|+.| |    . + .++.+.+++.+.+    .+.|.. . .+..++|+++++++. .   ..+++++++  |+||+
T Consensus         4 ~~~~~~~g-p----~-~-~~~~v~~a~~~~~----~~~~~~~~~~~~~~l~~~la~~~g-~---~~~~~~v~~--~~g~t   66 (366)
T 1m32_A            4 NYLLLTPG-P----L-T-TSRTVKEAMLFDS----CTWDDDYNIGVVEQIRQQLTALAT-A---SEGYTSVLL--QGSGS   66 (366)
T ss_dssp             -CEECSSS-S----C-C-CCHHHHHTTCCCC----CTTSHHHHTTTHHHHHHHHHHHHC-S---SSSEEEEEE--ESCHH
T ss_pred             ccccccCC-C----c-C-CCHHHHHHHhhhh----cCCCHHHHHHHHHHHHHHHHHHhC-C---CCcCcEEEE--ecChH
Confidence            46899988 4    1 2 3678888775532    122211 1 688999999999975 2   112357888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcC-CCCcc-hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISS-PTWGN-HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~-P~y~~-~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +++.++  +...+.+||+|++++ |+|+. +...++..|++++.++.+  .++.+|++.+++.+++. .+++++++++|+
T Consensus        67 ~a~~~~--~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~  141 (366)
T 1m32_A           67 YAVEAV--LGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCG--EVARPDVQAIDAILNAD-PTISHIAMVHSE  141 (366)
T ss_dssp             HHHHHH--HHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECC--TTSCCCHHHHHHHHHHC-TTCCEEEEESEE
T ss_pred             HHHHHH--HHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhcC-CCeEEEEEeccc
Confidence            999998  343456899988876 56654 667788889999999984  35679999999999853 246678889999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc-ccCCCccceEEE
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNV  318 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~  318 (467)
                      ||||.+++   +++|+++|++||+++|+||+|......   .+   +    .....++++.|+||.+ +++|  +||++ 
T Consensus       142 nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~---~~---~----~~~~~di~~~s~~K~~~~~~g--~G~~~-  205 (366)
T 1m32_A          142 TTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGIP---MD---I----AALHIDYLISSANKCIQGVPG--FAFVI-  205 (366)
T ss_dssp             TTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTSC---CC---T----TTTTCSEEEEESSSTTCCCSS--EEEEE-
T ss_pred             CCcceecC---HHHHHHHHHHcCCEEEEECCccccCcC---cc---c----cccCccEEEecCcccccCCCc--eEEEE-
Confidence            99999999   557888899999999999998744321   11   1    1113468899999976 5444  69996 


Q ss_pred             ecCCHHHHhhhhhhhHHHHHHHHHhhc------------------cCccCCCchHHHHHHHHHhCChhhHHHHHHH--HH
Q 012238          319 VCSSSDLAARCCEVAVIQVKSQLKRLA------------------RPMYSNPPVHGARIVANVVGNPALFDEWKAE--ME  378 (467)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~l~~~~------------------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~--l~  378 (467)
                        .++++++.            +....                  .....+++...+.++..+|+.      +.+.  ++
T Consensus       206 --~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~g~~~  265 (366)
T 1m32_A          206 --AREQKLAA------------CKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKE------LAKEGGVA  265 (366)
T ss_dssp             --EEHHHHTT------------CTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH------HHHHTHHH
T ss_pred             --ECHHHHHh------------hcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHH------HHHccCHh
Confidence              56666665            22110                  001124555555555544431      1222  56


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccC---CcceEEecCC------CHH-HHHHHHHcccEEEeCC-----C--e
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR---QIGMFSFTGL------NKA-QSDNMTNKWHVYMTKD-----G--R  441 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~---~~g~f~~~~l------~~~-~~~~ll~~~gI~v~~g-----g--R  441 (467)
                      +.+++++++++++.+.|+ ++|    +++..+   .+++++|+.+      +.+ +.+.+.+ +||.+.+|     +  |
T Consensus       266 ~~~~~~~~~~~~l~~~L~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~~~~iR  339 (366)
T 1m32_A          266 ARHQRYQQNQRSLVAGMR-ALG----FNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKE-QGFVIYPGKVSQSDCFR  339 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HTT----CCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHH-TTEECEECCCSSSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHH-HCC----CeeccCchhcCceEEEEEcCccCCCCHHHHHHHHHH-CCEEEECCcCCCCCEEE
Confidence            788899999999999998 775    344443   3565666532      344 4555555 59999886     2  9


Q ss_pred             EEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238          442 ISLAGL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       442 is~~~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                      |+++.. +++++++++++|+++++++
T Consensus       340 i~~~~~~~~~~i~~~~~~l~~~~~~~  365 (366)
T 1m32_A          340 IGNIGEVYAADITALLTAIRTAMYWT  365 (366)
T ss_dssp             EECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred             EecCCCCCHHHHHHHHHHHHHHHHhc
Confidence            998864 6799999999999998765

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.96  E-value=3.5e-28  Score=243.93  Aligned_cols=325  Identities=11%  Similarity=0.094  Sum_probs=220.4

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      ...+||+.|...+.-+.  .++.+.+++.+.+.....  ..| +.....++++.+++++.        .+++++  ++||
T Consensus        40 ~~~ld~~~~~~~~~lg~--~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g--------~~~v~~--~~gg  106 (397)
T 2ord_A           40 NAYLDFTSGIAVNVLGH--SHPRLVEAIKDQAEKLIHCSNLF-WNRPQMELAELLSKNTF--------GGKVFF--ANTG  106 (397)
T ss_dssp             CEEEESSHHHHTCTTCB--TCHHHHHHHHHHHHHCSCCCTTS-EEHHHHHHHHHHHHTTT--------SCEEEE--ESSH
T ss_pred             CEEEECCccccccccCC--CCHHHHHHHHHHHHhcccCcccc-CCHHHHHHHHHHHHhcC--------CCeEEE--eCCH
Confidence            46899988843112232  367888888887754211  123 34456777777777742        468888  9999


Q ss_pred             hhHHHHHHHHHHHh----CC-CCEEEEcCCCCcc-hHHHHhhCCCC------------eEEeeeecCCCCCCChhhHHHH
Q 012238          161 TGSLRLAAALIERY----FP-GAKVLISSPTWGN-HKNIFNDARVP------------WSEYRYYDPKTVGLDFEGMIAD  222 (467)
Q Consensus       161 t~al~l~~~~l~~~----~~-gd~Vlv~~P~y~~-~~~~~~~~G~~------------~~~v~~~~~~~~~~d~~~l~~~  222 (467)
                      ++|+.++...+...    .+ +++|++++|+|.. +...++..|.+            ++.++.       .|++.+++.
T Consensus       107 ~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~  179 (397)
T 2ord_A          107 TEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDLRRK  179 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHHHHH
Confidence            99999984433211    04 4789999999965 44477777775            445543       389999998


Q ss_pred             HHcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEec
Q 012238          223 IKAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (467)
Q Consensus       223 l~~~~~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  301 (467)
                      ++   ++++++++++|+||||. +++.+++++|+++|++||+++|+||+|.++.+.+   ....+..+ ....+++   |
T Consensus       180 l~---~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g---~~~~~~~~-~~~~d~~---s  249 (397)
T 2ord_A          180 MS---EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG---KLFAYQKY-GVVPDVL---T  249 (397)
T ss_dssp             CC---TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSHHHHH-TCCCSEE---E
T ss_pred             hh---cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCc---cchhhhhh-CCCCCee---e
Confidence            87   57889999999999999 9999999999999999999999999998876532   11222222 2223433   7


Q ss_pred             CccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 012238          302 YSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMA  381 (467)
Q Consensus       302 ~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~  381 (467)
                      |||.++ +|+|+||++   .+++++ .            +.........+.+.+.+.++..+|+..      .+  ++.+
T Consensus       250 ~sK~~~-~G~r~G~~~---~~~~~~-~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~--~~~~  304 (397)
T 2ord_A          250 TAKGLG-GGVPIGAVI---VNERAN-V------------LEPGDHGTTFGGNPLACRAGVTVIKEL------TK--EGFL  304 (397)
T ss_dssp             ECGGGG-TTSCCEEEE---ECSTTC-C------------CCTTSSCCSSTTCHHHHHHHHHHHHHH------TS--TTHH
T ss_pred             eccccC-CCcCeEEEE---EchHhc-c------------cCCCCcCCCCCCCHHHHHHHHHHHHHH------Hh--CCHH
Confidence            899999 899999996   444455 5            433222233456777777776665421      11  3566


Q ss_pred             HHHHHHHHHHHHHhhhcc--CCCCCcccccCCcceEEecCC----CH-HHHHHHHHcccEEEeCCC----eEEec-cCCh
Q 012238          382 GRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKDG----RISLA-GLSL  449 (467)
Q Consensus       382 ~~~~~~r~~l~~~l~~~~--g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~gg----Ris~~-~~~~  449 (467)
                      ++++++++++.+.|+ ++  +++. +....+.+ .|+|+.+    +. ++.+.+++ +||.+.++|    ||+++ ..++
T Consensus       305 ~~~~~~~~~l~~~L~-~~~~~~~~-~~~~~~~g-~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~iRis~~~~~~~  380 (397)
T 2ord_A          305 EEVEEKGNYLMKKLQ-EMKEEYDV-VADVRGMG-LMIGIQFREEVSNREVATKCFE-NKLLVVPAGNNTIRFLPPLTVEY  380 (397)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHCTT-EEEEEEET-TEEEEEECTTSCHHHHHHHHHH-TTEECEEETTTEEEECCCTTCCH
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCc-eEEEEEEe-EEEEEEECChHHHHHHHHHHHH-CCCEEccCCCCEEEEECCcCCCH
Confidence            778888888888887 65  2321 11223444 4555433    23 34556665 699999874    88854 3488


Q ss_pred             hhHHHHHHHHHHHHHhc
Q 012238          450 AKCEYLADAIIDSYHNV  466 (467)
Q Consensus       450 ~~i~~~~~~l~~~l~~~  466 (467)
                      +++++++++|+++++++
T Consensus       381 e~i~~~~~~l~~~l~~~  397 (397)
T 2ord_A          381 GEIDLAVETLKKVLQGI  397 (397)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhhC
Confidence            99999999999998753

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.96  E-value=3.9e-28  Score=241.84  Aligned_cols=322  Identities=14%  Similarity=0.052  Sum_probs=217.4

Q ss_pred             chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEE
Q 012238          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL  181 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vl  181 (467)
                      +++.+.+++.+.+...  ..+.......++++.+++++....    ++++|++  |+||++++. +  +...+.+||+|+
T Consensus        13 ~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~----~~~~v~~--~~g~t~al~-~--~~~~~~~gd~vi   81 (384)
T 3zrp_A           13 IKEDVLVAGLENNVGF--TSKEFVEALAYSLKGLRYVMGASK----NYQPLII--PGGGTSAME-S--VTSLLKPNDKIL   81 (384)
T ss_dssp             CCHHHHHHTTCCSCCT--TSHHHHHHHHHHHHHHHHHHTCCT----TSEEEEE--ESCHHHHHH-H--GGGGCCTTCEEE
T ss_pred             CCHHHHHHhhcccccc--ccHHHHHHHHHHHHHHHHHhCCCC----CCcEEEE--cCCcHHHHH-H--HHhhcCCCCEEE
Confidence            4788888776543221  112224567889999999975431    1278988  999999999 7  444577999999


Q ss_pred             EcCCCCcc--hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 012238          182 ISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ  259 (467)
Q Consensus       182 v~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~  259 (467)
                      +++|+|..  +...++..|++++.++++  .++.+|++.+++.+++  .+++++++++|+||||.+++   +++|.++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l~~  154 (384)
T 3zrp_A           82 VVSNGVFGDRWEQIFKRYPVNVKVLRPS--PGDYVKPGEVEEEVRK--SEYKLVALTHVETSTGVREP---VKDVINKIR  154 (384)
T ss_dssp             EECSSHHHHHHHHHHTTSSCEEEEECCS--TTCCCCHHHHHHHHHH--SCEEEEEEESEETTTTEECC---HHHHHHHHG
T ss_pred             EecCCcchHHHHHHHHHcCCcEEEecCC--CCCCCCHHHHHHHHHh--CCCcEEEEeCCCCCCceECc---HHHHHHHHH
Confidence            99999955  667778899999999984  3567999999999984  36889999999999999998   557888899


Q ss_pred             hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhh-hhh------
Q 012238          260 EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARC-CEV------  332 (467)
Q Consensus       260 ~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~-~~~------  332 (467)
                      +||+++|+|++|......   .+.       ......+++.|+||.++ .+.++||++   .++++++.- ...      
T Consensus       155 ~~~~~li~D~a~~~~~~~---~~~-------~~~~~d~~~~s~~K~~~-~~~g~g~~~---~~~~~~~~~~~~~~~~~~~  220 (384)
T 3zrp_A          155 KYVELIVVDGVSSVGAEE---VKA-------EEWNVDVYLTASQKALG-SAAGLGLLL---LSPKALSILDSQNSIAGYY  220 (384)
T ss_dssp             GGEEEEEEECTTTTTTSC---CCT-------TTTTCSEEEEETTSTTC-CCSSEEEEE---ECHHHHHHHHHCCCSCCST
T ss_pred             hcCCEEEEECcccccCcc---ccc-------cccCCCEEEecCccccc-CCCceEEEE---ECHHHHHHhcCCCCCCccc
Confidence            999999999997643321   111       11235688999999885 224489985   677776650 000      


Q ss_pred             -hHHHHHHHHHhh---ccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc
Q 012238          333 -AVIQVKSQLKRL---ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  408 (467)
Q Consensus       333 -~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~  408 (467)
                       ....+.......   ....+..++...+.++..++..  + .  ...+++++++++++++++.+.|+ ++|    +++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~--~-~--~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~  290 (384)
T 3zrp_A          221 LDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRL--I-E--KEGIENRIKRHTMVASAIRAGLE-ALG----LEIV  290 (384)
T ss_dssp             TCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH--H-H--HHCHHHHHHHHHHHHHHHHHHHH-HTT----CCBS
T ss_pred             ccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHH--H-H--hcCHHHHHHHHHHHHHHHHHHHH-HCC----CeEc
Confidence             000011101110   1111124444444444344321  1 1  12267888999999999999999 776    4555


Q ss_pred             cCC----cceEEecC---CCHHH-HHHHHHcccEEEeCCC-------eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          409 LRQ----IGMFSFTG---LNKAQ-SDNMTNKWHVYMTKDG-------RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       409 ~~~----~g~f~~~~---l~~~~-~~~ll~~~gI~v~~gg-------Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .+.    +++++|+.   .+.+. .+.+.+ +||.+.+|.       ||+++. .+++++++++++|+++++++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~  363 (384)
T 3zrp_A          291 ARRPESYSNTVTGVILKVADPQKVLAGTVN-EGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKL  363 (384)
T ss_dssp             CSSGGGBCSSEEEEECSSSCHHHHHHHHHT-TTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCcccccCccEEEEECCCCCHHHHHHHHHH-CCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHc
Confidence            555    45555543   34444 555554 599998874       999763 37799999999999998764

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.96  E-value=9.4e-28  Score=240.59  Aligned_cols=334  Identities=13%  Similarity=0.070  Sum_probs=223.2

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      ...+||+.|.+.+  ...+.++.+.+++.+.+....  ...| +.....++++.+++++..      ++++|++  |+||
T Consensus        45 ~~~ld~~~~~~~~--~~g~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~------~~~~v~~--~~gg  113 (395)
T 1vef_A           45 NEYIDCVGGYGVA--NLGHGNPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAILPP------ELNRVFP--VNSG  113 (395)
T ss_dssp             CEEEESSHHHHTC--TTCBTCHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHTSCT------TEEEEEE--ESSH
T ss_pred             CEEEEccCccccc--cCCCCCHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHhcCC------CcCEEEE--cCcH
Confidence            4689999886422  222237889999888875421  1234 566778888888888531      3678988  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcc-hHHHHhhCCCCeEE---eeeecCC--CCCCChhhHHHHHHcCCCCcEEEE
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGN-HKNIFNDARVPWSE---YRYYDPK--TVGLDFEGMIADIKAAPGGSFILL  234 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~-~~~~~~~~G~~~~~---v~~~~~~--~~~~d~~~l~~~l~~~~~~~~~i~  234 (467)
                      ++++.++...+..+.+||+|++++|+|.. +...++..|.+++.   +|+..+.  -...|++.+++.++   +++++++
T Consensus       114 ~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~---~~~~~v~  190 (395)
T 1vef_A          114 TEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVD---EETAAVI  190 (395)
T ss_dssp             HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCC---TTEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhc---cCEEEEE
Confidence            99999984332222578999999999964 55566777775321   1111000  00158999999887   4678888


Q ss_pred             eCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCcc
Q 012238          235 HGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI  313 (467)
Q Consensus       235 i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri  313 (467)
                      +++++||||.++ +.+++++|+++|++||+++|+||+|.++...+.   ...+ .......+++   ||||.++. |+|+
T Consensus       191 ~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~---~~~~-~~~~~~~d~~---s~sK~~~~-g~~~  262 (395)
T 1vef_A          191 LEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK---RFAF-EHFGIVPDIL---TLAKALGG-GVPL  262 (395)
T ss_dssp             ECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTH-HHHTCCCSEE---EECGGGGT-TSSC
T ss_pred             EeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc---hhHh-hhcCCCCCEE---EEcccccC-CCce
Confidence            777789999864 788899999999999999999999997654321   1111 1222233433   88999995 9999


Q ss_pred             ceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          314 GAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  393 (467)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~  393 (467)
                      ||++   .++++++.            +.........+++.+.+.++..+|+..      .+  +...++++++++++.+
T Consensus       263 G~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~al~~~------~~--~~~~~~~~~~~~~l~~  319 (395)
T 1vef_A          263 GVAV---MREEVARS------------MPKGGHGTTFGGNPLAMAAGVAAIRYL------ER--TRLWERAAELGPWFME  319 (395)
T ss_dssp             EEEE---EEHHHHHT------------SCTTSSCCSSTTCHHHHHHHHHHHHHH------HH--HTTHHHHHHHHHHHHH
T ss_pred             EEEE---ehHHHHhh------------hccCCcCCCcCCCHHHHHHHHHHHHHH------Hh--CCHHHHHHHHHHHHHH
Confidence            9996   55666665            433212223356667776666555321      11  3467788888999999


Q ss_pred             HhhhccCCCCCcccccCCcceEEecCC---CHHHHHHHHHcccEEEeCCC----eEEec-cCChhhHHHHHHHHHHHHH
Q 012238          394 SLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       394 ~l~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~~~i~~~~~~l~~~l~  464 (467)
                      .|+ +++.+. +...+ ..|.|+|+.+   ..++.+.+++++||.+.+++    ||+++ ..+++++++++++|+++++
T Consensus       320 ~l~-~~~~~~-~~~~~-~~g~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~  395 (395)
T 1vef_A          320 KLR-AIPSPK-IREVR-GMGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVLA  395 (395)
T ss_dssp             HHH-TSCCTT-EEEEE-EETTEEEEEESSCSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             HHH-HhhcCc-eEEEE-EEEEEEEEEEcChHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence            998 765311 11122 3455666644   34567777735699999874    88765 3478999999999998763

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.96  E-value=2.9e-27  Score=241.72  Aligned_cols=334  Identities=11%  Similarity=0.055  Sum_probs=220.2

Q ss_pred             CCCcEEecCccc-CCCCCC---CCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeec
Q 012238           82 DEKKLNLGVGAY-RTEELQ---PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (467)
Q Consensus        82 ~~~~i~l~~G~~-~d~~~~---p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (467)
                      +.++++|+.|.+ .|....   ..+++.+.+++.    .+ ...|.+..+..+||+++++++..        +++++  |
T Consensus        32 g~~~~~l~~~~~ylD~~~~~~~~~~~~~~~~a~~----~~-~~~y~~~~~~~~l~~~la~~~~~--------~~~~~--~   96 (456)
T 2ez2_A           32 GYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMM----MG-DEAYAGSENFYHLERTVQELFGF--------KHIVP--T   96 (456)
T ss_dssp             TTCGGGSCGGGCSEECSCSSSCCCCCHHHHHHHT----TC-CCCSSSCHHHHHHHHHHHHHHCC--------SEEEE--E
T ss_pred             CCCcccCCcccceeeeccccCCccCCHHHHHHhh----cc-hhhcccChhHHHHHHHHHHHhCC--------CcEEE--e
Confidence            346777777753 332111   123566666554    22 25688888999999999999743        36777  8


Q ss_pred             CCchhHHHHHHHHHHHhCCCCEEEEcCCCC-cchHHHHhhCCCCeEEeeeecC---C-----CCCCChhhHHHHHHcCC-
Q 012238          158 LSGTGSLRLAAALIERYFPGAKVLISSPTW-GNHKNIFNDARVPWSEYRYYDP---K-----TVGLDFEGMIADIKAAP-  227 (467)
Q Consensus       158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y-~~~~~~~~~~G~~~~~v~~~~~---~-----~~~~d~~~l~~~l~~~~-  227 (467)
                      +||++|+.++  +...+.+||  +++.|+| ..+...++..|++++.++++++   .     ++.+|++.+++.+++.. 
T Consensus        97 ~~gt~a~~~a--l~~l~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~  172 (456)
T 2ez2_A           97 HQGRGAENLL--SQLAIKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA  172 (456)
T ss_dssp             SSHHHHHHHH--HHHHCCTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG
T ss_pred             CCcHHHHHHH--HHHhCCCCC--EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccc
Confidence            9999999998  444467999  8889999 7878899999999999988521   1     36789999999997421 


Q ss_pred             CCcEEEEeCCCCC-CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC----------CCCCCCCCChhHHHHHHhcCCeE
Q 012238          228 GGSFILLHGCAHN-PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG----------FASGSLDNDASSVRLFATRGMEL  296 (467)
Q Consensus       228 ~~~~~i~i~~p~N-PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~----------~~~~~~~~~~~~~~~~~~~~~~~  296 (467)
                      .+.+++++++|+| |||.+++.+++++|+++|++||+++|+||+|..          +.+.+  .....+........++
T Consensus       173 ~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g--~~~~~~~~~~~~~~d~  250 (456)
T 2ez2_A          173 ENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFEN--KSIAEIVHEMFSYADG  250 (456)
T ss_dssp             GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTT--SCHHHHHHHHHTTCSE
T ss_pred             cceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCC--cchhhhhhhhcccCCE
Confidence            2237888899999 999999999999999999999999999999875          33432  1211111011222345


Q ss_pred             EEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC--ccCCCchHHHHH-HHHHhCChhhHHHH
Q 012238          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP--MYSNPPVHGARI-VANVVGNPALFDEW  373 (467)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~-~~~~L~~~~~~~~~  373 (467)
                      +++ |++|.++ +| |.||++  +.++++++.        +.. +......  ...+.+.....+ +...+         
T Consensus       251 ~~~-S~kk~~~-~~-~gG~~~--~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~a~a~~~~---------  307 (456)
T 2ez2_A          251 CTM-SGKKDCL-VN-IGGFLC--MNDDEMFSS--------AKE-LVVVYEGMPSYGGLAGRDMEAMAIGLR---------  307 (456)
T ss_dssp             EEE-ETTTTTC-CS-SCEEEE--ESCHHHHHH--------HHH-HHHHHTCCTTTTTCCHHHHHHHHHHHH---------
T ss_pred             EEE-eCcccCC-CC-ceeEEE--ECCHHHHHH--------HHH-HHhhccCcccccCcchhHHHHHHHHHH---------
Confidence            555 7888765 77 789985  347787776        322 1111000  111222222122 22221         


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-------C-HHH-----HHHHHHcccEEEeC-
Q 012238          374 KAEM-EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-------N-KAQ-----SDNMTNKWHVYMTK-  438 (467)
Q Consensus       374 ~~~l-~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-------~-~~~-----~~~ll~~~gI~v~~-  438 (467)
                       +.+ +...++.+++.+++.+.|+ +.|    +.+..|.+++++|+.+       + .++     .+++++++||.+.+ 
T Consensus       308 -~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~  381 (456)
T 2ez2_A          308 -EAMQYEYIEHRVKQVRYLGDKLK-AAG----VPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMER  381 (456)
T ss_dssp             -HHTCHHHHHHHHHHHHHHHHHHH-HTT----CCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEE
T ss_pred             -HHhHHHHHHHHHHHHHHHHHHHh-cCC----CccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecc
Confidence             111 2334444555677788887 655    4566677888888642       2 233     45554667997533 


Q ss_pred             C------------------C--eEEecc--CChhhHHHHHHHHHHHHHh
Q 012238          439 D------------------G--RISLAG--LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       439 g------------------g--Ris~~~--~~~~~i~~~~~~l~~~l~~  465 (467)
                      |                  +  ||+++.  .+++++++++++|++++++
T Consensus       382 g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~  430 (456)
T 2ez2_A          382 GIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH  430 (456)
T ss_dssp             SHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             cccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            1                  3  999884  4889999999999999865

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.96  E-value=1.6e-27  Score=238.01  Aligned_cols=308  Identities=10%  Similarity=0.075  Sum_probs=213.9

Q ss_pred             chHHHHHHHHHHHhcCCCCcCCC--CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCE
Q 012238          102 VLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK  179 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~  179 (467)
                      +++.+.+++.+...    ..|.+  .....++++.+++++....     +++|++  |+||++++.++  +...+.+||+
T Consensus        34 ~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~~~~~-----~~~v~~--~~gg~~al~~~--~~~~~~~gd~  100 (393)
T 3kgw_A           34 LAPRVLAAGSLRMI----GHMQKEMLQIMEEIKQGIQYVFQTRN-----PLTLVV--SGSGHCAMETA--LFNLLEPGDS  100 (393)
T ss_dssp             CCHHHHHHTTCCCC----CTTSHHHHHHHHHHHHHHHHHHTCCC-----SEEEEE--SCCTTTHHHHH--HHHHCCTTCE
T ss_pred             CCHHHHHHhccccc----CcccHHHHHHHHHHHHHHHHHhCCCC-----CcEEEE--eCCcHHHHHHH--HHhcCCCCCE
Confidence            37788877755321    11222  3456788999999865431     345888  99999999998  4445779999


Q ss_pred             EEEcCCCCc--chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 012238          180 VLISSPTWG--NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV  257 (467)
Q Consensus       180 Vlv~~P~y~--~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~  257 (467)
                      |+++.++|.  .+...++..|++++.++++  .++.+|++.+++.+++  .+++++++++||||||.+++   +++|.++
T Consensus       101 vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l  173 (393)
T 3kgw_A          101 FLTGTNGIWGMRAAEIADRIGARVHQMIKK--PGEHYTLQEVEEGLAQ--HKPVLLFLVHGESSTGVVQP---LDGFGEL  173 (393)
T ss_dssp             EEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CTTHHHH
T ss_pred             EEEEeCCchhHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHHHHHhh--CCCcEEEEeccCCcchhhcc---HHHHHHH
Confidence            999998885  3367788899999999984  3457999999999984  26678899999999999998   5578888


Q ss_pred             HHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc-ccCCCccceEEEecCCHHHHhhhhhhhHHH
Q 012238          258 IQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARCCEVAVIQ  336 (467)
Q Consensus       258 ~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~  336 (467)
                      |++||+++|+||+|......   .+.       ......+++.|+||.+ +++|  +||++   .++++++.        
T Consensus       174 ~~~~~~~li~De~~~~g~~~---~~~-------~~~~~d~~~~s~sK~~~~~~g--~g~~~---~~~~~~~~--------  230 (393)
T 3kgw_A          174 CHRYQCLLLVDSVASLGGVP---IYM-------DQQGIDIMYSSSQKVLNAPPG--ISLIS---FNDKAKYK--------  230 (393)
T ss_dssp             HHHTTCEEEEECTTTTTTSC---CCT-------TTTTCCEEEEESSSTTCCCSS--CEEEE---ECHHHHHH--------
T ss_pred             HHHcCCEEEEECCccccCcc---cch-------hhcCCCEEEecCcccccCCCc--eeEEE---ECHHHHHH--------
Confidence            99999999999997632211   110       1123467889999976 4444  89985   67777776        


Q ss_pred             HHHHHHhhcc-----------------------CccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          337 VKSQLKRLAR-----------------------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  393 (467)
Q Consensus       337 ~~~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~  393 (467)
                          +.....                       ....+++...+.++..++...   .  +..+++..++++++++.+.+
T Consensus       231 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~--~~~~~~~~~~~~~~~~~l~~  301 (393)
T 3kgw_A          231 ----VYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALI---A--EQGLENCWRRHREATAHLHK  301 (393)
T ss_dssp             ----HHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH---H--HHCHHHHHHHHHHHHHHHHH
T ss_pred             ----HhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHH---H--HhhHHHHHHHHHHHHHHHHH
Confidence                433211                       112234554544444443211   1  22367888999999999999


Q ss_pred             HhhhccCCCCCcccccCC----cceEEecC----CCH-HHHHHHHHcccEEEeCC------C--eEEe-ccC-ChhhHHH
Q 012238          394 SLSAKDKSGKDWSFILRQ----IGMFSFTG----LNK-AQSDNMTNKWHVYMTKD------G--RISL-AGL-SLAKCEY  454 (467)
Q Consensus       394 ~l~~~~g~~~~~~~~~~~----~g~f~~~~----l~~-~~~~~ll~~~gI~v~~g------g--Ris~-~~~-~~~~i~~  454 (467)
                      .|+ ++|    +++..+.    .++++|+.    .+. ++.+.+++++||.+.+|      +  ||++ +.. +++++++
T Consensus       302 ~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~  376 (393)
T 3kgw_A          302 HLQ-EMG----LKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDR  376 (393)
T ss_dssp             HHH-HTT----CCBSSSSGGGBCSSEEEEECCTTBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHH
T ss_pred             HHH-HcC----CeeccCChhhcCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHH
Confidence            999 776    3444332    24444443    344 45666766669999986      2  9998 543 7899999


Q ss_pred             HHHHHHHHHHhc
Q 012238          455 LADAIIDSYHNV  466 (467)
Q Consensus       455 ~~~~l~~~l~~~  466 (467)
                      ++++|+++++++
T Consensus       377 ~~~~l~~~l~~~  388 (393)
T 3kgw_A          377 VAEALREALQHC  388 (393)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhh
Confidence            999999998765

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.96  E-value=4.9e-27  Score=236.06  Aligned_cols=324  Identities=14%  Similarity=0.022  Sum_probs=220.9

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC---CCcCC----CCcchHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---NKEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~---~~~Y~----~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      +.+.|..+.+    .  ++++.+.+++.+.+....   ...|.    ...+..++|+++++++..      ++++|++  
T Consensus        26 ~~~~ld~~~~----~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~--   91 (406)
T 3cai_A           26 GWVHFDAPAG----M--LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNA------DPGGVVL--   91 (406)
T ss_dssp             SCEECBGGGC----C--CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTC------CGGGEEE--
T ss_pred             CeEEEeCCCc----C--CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCC------CCCeEEE--
Confidence            4788887765    3  347889999988775321   12242    245789999999999753      2678998  


Q ss_pred             cCCchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHHhh----CCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcE
Q 012238          157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFND----ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (467)
Q Consensus       157 t~ggt~al~l~~~~l~-~~~~gd~Vlv~~P~y~~~~~~~~~----~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (467)
                      |+|+++++.++...+. .+.+||+|+++.|+|..+...+..    .|++++.++++ ++++.+|++.+++.++   ++++
T Consensus        92 ~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~-~~~~~~d~~~l~~~l~---~~~~  167 (406)
T 3cai_A           92 GADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVD-IETGELPTWQWESLIS---KSTR  167 (406)
T ss_dssp             ESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCC-TTTCCCCGGGHHHHCC---TTEE
T ss_pred             eCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecC-cccCCcCHHHHHHHhC---CCce
Confidence            9999999999732211 156999999999999876555443    69999999984 2456799999999987   5788


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCC
Q 012238          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (467)
Q Consensus       232 ~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~  311 (467)
                      ++++++|+||||.+++.   ++|.++|+++|+++|+|++|.....   ..+   +..   . ..++++.|+||.+| ++ 
T Consensus       168 ~v~~~~~~nptG~~~~l---~~i~~l~~~~~~~li~D~a~~~g~~---~~~---~~~---~-~~d~~~~s~~K~~g-~~-  232 (406)
T 3cai_A          168 LVAVNSASGTLGGVTDL---RAMTKLVHDVGALVVVDHSAAAPYR---LLD---IRE---T-DADVVTVNAHAWGG-PP-  232 (406)
T ss_dssp             EEEEESBCTTTCBBCCC---HHHHHHHHHTTCEEEEECTTTTTTC---CCC---HHH---H-CCSEEEEEGGGGTS-CS-
T ss_pred             EEEEeCCcCCccccCCH---HHHHHHHHHcCCEEEEEcccccCCC---CCC---chh---c-CCCEEEeehhhhcC-CC-
Confidence            99999999999999984   5777889999999999999863221   111   111   1 34688999999887 54 


Q ss_pred             ccc-eEEEecCCHHHHhhhhhhhHHHHHHHHHhhcc---------CccCCCchHHHHHHHHHhCChh---------hHHH
Q 012238          312 RIG-AMNVVCSSSDLAARCCEVAVIQVKSQLKRLAR---------PMYSNPPVHGARIVANVVGNPA---------LFDE  372 (467)
Q Consensus       312 RiG-~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~L~~~~---------~~~~  372 (467)
                       +| |++   .++++++.            ++....         .....++...+.++..+++...         ....
T Consensus       233 -~G~~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~  296 (406)
T 3cai_A          233 -IGAMVF---RDPSVMNS------------FGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRER  296 (406)
T ss_dssp             -CEEEEE---SCHHHHHT------------SCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHH
T ss_pred             -cCeEEE---EehHHHhh------------cCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhh
Confidence             89 885   67776665            433211         0122344444333333332100         0112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC---cceEEec---CCCHHHHHHHHHcccEEEeCC-------
Q 012238          373 WKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ---IGMFSFT---GLNKAQSDNMTNKWHVYMTKD-------  439 (467)
Q Consensus       373 ~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~---~g~f~~~---~l~~~~~~~ll~~~gI~v~~g-------  439 (467)
                      |.+.+++++++++++++++.+.|+ +++  + +++..+.   ++ ++++   +.+.+.+.+.+.++||.+.+|       
T Consensus       297 ~~~~~~~~~~~~~~~~~~l~~~L~-~~~--~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~~gi~v~~g~~~~~~~  371 (406)
T 3cai_A          297 LAVSMQSADAYLNRVFDYLMVSLR-SLP--L-VMLIGRPEAQIP-VVSFAVHKVPADRVVQRLADNGILAIANTGSRVLD  371 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-TCT--T-EEECCCCSSBCS-EEEEEETTBCHHHHHHHHHHTTEECEECCSCHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHh-cCC--C-eEEcCCccccCC-EEEEEECCcCHHHHHHHHHHCCcEEecCChHHHHH
Confidence            333577888999999999999998 752  1 4555443   45 3433   334544444445579998763       


Q ss_pred             --------C--eEEeccC-ChhhHHHHHHHHHH
Q 012238          440 --------G--RISLAGL-SLAKCEYLADAIID  461 (467)
Q Consensus       440 --------g--Ris~~~~-~~~~i~~~~~~l~~  461 (467)
                              +  ||+++.. +++++++++++|++
T Consensus       372 ~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~  404 (406)
T 3cai_A          372 VLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS  404 (406)
T ss_dssp             HHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             HcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence                    3  9998753 57899999999875

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.96  E-value=2.1e-27  Score=234.22  Aligned_cols=327  Identities=13%  Similarity=0.008  Sum_probs=224.2

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +++.|||+.+.+    ..  +++.+++++.+.... ....|.+.....++++.+++++. .      +.+|++  |+||+
T Consensus         6 ~~~~id~~~~~~----~~--~~~~v~~a~~~~~~~-~~~~~~~~~~~~~l~~~la~~~g-~------~~~v~~--~~~gt   69 (356)
T 1v72_A            6 RPPALGFSSDNI----AG--ASPEVAQALVKHSSG-QAGPYGTDELTAQVKRKFCEIFE-R------DVEVFL--VPTGT   69 (356)
T ss_dssp             CCCCCBCSCGGG----CC--CCHHHHHHHHHTTSS-CCCSTTCSHHHHHHHHHHHHHHT-S------CCEEEE--ESCHH
T ss_pred             CCceEeeccCCc----cC--CCHHHHHHHHhhccC-cccccccchHHHHHHHHHHHHhC-C------CCcEEE--eCCcc
Confidence            357899998765    32  278899998887532 23567666777889999999864 2      446788  89999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH--HhhC--CCCeEEeeeecCCCCCCChhhHHH-HHHcC----CCCcEE
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNI--FNDA--RVPWSEYRYYDPKTVGLDFEGMIA-DIKAA----PGGSFI  232 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~--~~~~--G~~~~~v~~~~~~~~~~d~~~l~~-~l~~~----~~~~~~  232 (467)
                      +++.++  +.....+||+|+++.|+|..+...  ++..  |++++.+|.+   ++.+|++.+++ .+++.    ..++++
T Consensus        70 ~a~~~a--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~  144 (356)
T 1v72_A           70 AANALC--LSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPAC  144 (356)
T ss_dssp             HHHHHH--HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEE
T ss_pred             HHHHHH--HHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceE
Confidence            999987  443456999999999998765544  6666  9999988873   36799999999 88631    125788


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCC--CCCCCChhHHHHHHhcCCeEEEEecCccCcccCC
Q 012238          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS--GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA  310 (467)
Q Consensus       233 i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G  310 (467)
                      +++++||| ||.+++.+++++|+++|++||+++|+|++|..+..  .+.......    .....++ ++.|+||. +   
T Consensus       145 v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~----~~~~~d~-~~~s~sK~-g---  214 (356)
T 1v72_A          145 VSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMT----WKAGVDA-LSFGATKN-G---  214 (356)
T ss_dssp             EEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTT----GGGTCCE-EEECCGGG-T---
T ss_pred             EEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhh----hhhcCCE-EEEecccC-C---
Confidence            88899987 99999999999999999999999999999865321  111011000    0112334 45699998 3   


Q ss_pred             Cccc--eEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238          311 ERIG--AMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  388 (467)
Q Consensus       311 ~RiG--~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r  388 (467)
                      .|+|  |++   .++++++.        +.. +.... ..........+..+...+.+..        ..+..+++++++
T Consensus       215 ~~~G~g~~~---~~~~~~~~--------~~~-~~~~~-~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~  273 (356)
T 1v72_A          215 VLAAEAIVL---FNTSLATE--------MSY-RRKRA-GHLSSKMRFLSAQIDAYLTDDL--------WLRNARKANAAA  273 (356)
T ss_dssp             CSSCEEEEE---SSGGGHHH--------HHH-HHHHT-TCCCSSTHHHHHHHHHHTSTTH--------HHHHHHHHHHHH
T ss_pred             CcCccEEEE---ECHHHHhh--------HHH-Hhhcc-CchhhhHHHHHHHHHHHHHhhh--------HHHHHHHHHHHH
Confidence            4677  653   67777776        322 11111 1111223333333344454421        223456677888


Q ss_pred             HHHHHHhhhcc-CCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCC----C--eEEecc-CChhhHHHHHHHHH
Q 012238          389 QKLFDSLSAKD-KSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKD----G--RISLAG-LSLAKCEYLADAII  460 (467)
Q Consensus       389 ~~l~~~l~~~~-g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~g----g--Ris~~~-~~~~~i~~~~~~l~  460 (467)
                      +++.+.|+ ++ |    +++..+.+++|+|+.+..++.+++.+ +||.+.+|    +  ||++.. .+++++++++++|+
T Consensus       274 ~~l~~~L~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~  347 (356)
T 1v72_A          274 QRLAQGLE-GLGG----VEVLGGTEANILFCRLDSAMIDALLK-AGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVR  347 (356)
T ss_dssp             HHHHHHHT-TCTT----EEEESCCCSSEEEEEECHHHHHHHHH-TTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHh-hCCC----cEEccCCCccEEEEEcCHHHHHHHHh-cCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence            99999998 64 3    56656777888888777777777765 59999865    3  998753 37899999999999


Q ss_pred             HHHHhc
Q 012238          461 DSYHNV  466 (467)
Q Consensus       461 ~~l~~~  466 (467)
                      +++++.
T Consensus       348 ~~l~~~  353 (356)
T 1v72_A          348 LAADRT  353 (356)
T ss_dssp             HTC---
T ss_pred             HHHHhh
Confidence            987653

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.96  E-value=3.3e-27  Score=237.47  Aligned_cols=319  Identities=12%  Similarity=0.022  Sum_probs=220.1

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC--CcchHHHHHHHHHHHhCCCCcccccCc-eeeeecCC
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQR-VATVQGLS  159 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~-i~~~~t~g  159 (467)
                      +..+.|+-|-       ..+++.+.+++.+...    ..|.+  .....++++.+++++...      .++ +++  ++|
T Consensus        12 ~~~~~~~pgp-------~~~~~~v~~a~~~~~~----~~~~~~~~~~~~~~~~~la~~~~~~------~~~~v~~--~~s   72 (411)
T 3nnk_A           12 PSRLLMGPGP-------INADPRVLRAMSSQLI----GQYDPAMTHYMNEVMALYRGVFRTE------NRWTMLV--DGT   72 (411)
T ss_dssp             CCCEEESSSC-------CCCCHHHHHHHTSCCC----CTTCHHHHHHHHHHHHHHHHHHTCC------CSEEEEE--ESC
T ss_pred             ccceeecCCC-------CCCCHHHHHHhhcccc----ccccHHHHHHHHHHHHHHHHHhCCC------CCcEEEE--CCC
Confidence            3556666442       2247788877754321    12222  234578888899887543      333 666  889


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcc--hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~  237 (467)
                      |++++.++  +...+.+||+|+++.|+|..  +...++..|++++.+++  +.++.+|++.+++.+++  .+++++++++
T Consensus        73 gt~al~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~--~~~~~v~~~~  146 (411)
T 3nnk_A           73 SRAGIEAI--LVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEV--PWGEVFTPDQVEDAVKR--IRPRLLLTVQ  146 (411)
T ss_dssp             HHHHHHHH--HHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCHHHHHHHHHH--HCCSEEEEES
T ss_pred             cHHHHHHH--HHHhcCCCCEEEEecCCchHHHHHHHHHHcCCeEEEEec--CCCCCCCHHHHHHHHhh--CCCeEEEEeC
Confidence            99999998  44457799999999999976  88899999999999998  44677899999999984  2667888899


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       238 p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                      ||||||.+.+   +++|+++|++||+++|+||++......   .+.       ......+++.|++|.++ .+.++||++
T Consensus       147 ~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~---~~~-------~~~~~d~~~~s~~K~l~-~~~g~g~~~  212 (411)
T 3nnk_A          147 GDTSTTMLQP---LAELGEICRRYDALFYTDATASLGGNP---LET-------DVWGLDAVSAGMQKCLG-GPSGTSPIT  212 (411)
T ss_dssp             EETTTTEECC---CTTHHHHHHHHTCEEEEECTTTBTTBC---CCT-------TTTTCSEEECCSTTTTC-CCSSEEEEE
T ss_pred             CCCCcceecc---HHHHHHHHHHcCCEEEEECCcccCCcc---cch-------hccCCcEEEecCccccC-CCCceEEEE
Confidence            9999999988   557788899999999999996532211   111       11134688999999743 233589985


Q ss_pred             EecCCHHHHhhhhhhhHHHHHHHHHhhc------------------------------------cCccCCCchHHHHHHH
Q 012238          318 VVCSSSDLAARCCEVAVIQVKSQLKRLA------------------------------------RPMYSNPPVHGARIVA  361 (467)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------------------~~~~~~~~~~~~~~~~  361 (467)
                         .++++++.            +....                                    ......++...+.++.
T Consensus       213 ---~~~~~~~~------------~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  277 (411)
T 3nnk_A          213 ---LSARMEEA------------IRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGAR  277 (411)
T ss_dssp             ---ECHHHHHH------------HHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHH
T ss_pred             ---ECHHHHHH------------HhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHH
Confidence               67777766            43321                                    1111234444444444


Q ss_pred             HHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCc---ceEEecC----CCHH-HHHHHHHcc
Q 012238          362 NVVGNPALFDEWKAE-MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQI---GMFSFTG----LNKA-QSDNMTNKW  432 (467)
Q Consensus       362 ~~L~~~~~~~~~~~~-l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~---g~f~~~~----l~~~-~~~~ll~~~  432 (467)
                      .++..      +.+. +++.+++++++++++.+.|+ ++|    +++..+.+   +.++++.    .+.+ +.+.+++++
T Consensus       278 ~al~~------~~~~g~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  346 (411)
T 3nnk_A          278 ECARL------ILQEGLDYGIARHKLHGDALVKGIQ-AMG----LETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDF  346 (411)
T ss_dssp             HHHHH------HHHHCHHHHHHHHHHHHHHHHHHHH-HTT----CCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             HHHHH------HHHhhHHHHHHHHHHHHHHHHHHHH-HcC----CEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhc
Confidence            44321      1233 67888999999999999999 776    34444432   3444442    3444 456666767


Q ss_pred             cEEEeCC------C--eEEe-ccC-ChhhHHHHHHHHHHHHHhc
Q 012238          433 HVYMTKD------G--RISL-AGL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       433 gI~v~~g------g--Ris~-~~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                      ||.+.+|      +  ||++ +.. +++++++++++|+++++++
T Consensus       347 gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~  390 (411)
T 3nnk_A          347 GIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL  390 (411)
T ss_dssp             SEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred             CeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence            9999876      2  9998 533 6799999999999998764

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.96  E-value=1.1e-27  Score=238.65  Aligned_cols=319  Identities=13%  Similarity=0.043  Sum_probs=203.6

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (467)
                      ++||++.|.+    ..+ +++.+++++.     .. ..|  ..-..++++.++++++..     +++++++  ++||+++
T Consensus        29 ~v~~~~~~~~----~~~-~~~~v~~a~~-----~~-~~~--~~~~~~~~~~~a~~~g~~-----~~~~~~~--~~ggt~a   88 (374)
T 2aeu_A           29 ALYDLSGLSG----GFL-IDEKDKALLN-----TY-IGS--SYFAEKVNEYGLKHLGGD-----ENDKCVG--FNRTSSA   88 (374)
T ss_dssp             GCEECSSCCC----CCC-CCHHHHHHHT-----ST-THH--HHHHHHHHHHHHHHHTCC-----TTEEEEE--ESSHHHH
T ss_pred             ceeeecccCC----CCC-CCHHHHHHHH-----Hh-cCc--hHHHHHHHHHHHHHhCCC-----CcceEEE--EcChHHH
Confidence            6899998875    333 4788888774     11 111  111234444454554321     2467888  8999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHH---HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEE-EEeCCCC
Q 012238          164 LRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI-LLHGCAH  239 (467)
Q Consensus       164 l~l~~~~l~~~~~gd~Vlv~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~-i~i~~p~  239 (467)
                      +.++  + ..+ +||+|+++.|+|+.+..   .++..|++++.+         .|++.+++. +   +++++ +++++||
T Consensus        89 ~~~~--~-~~~-~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v---------~d~~~l~~~-~---~~~~~~v~~~~p~  151 (374)
T 2aeu_A           89 ILAT--I-LAL-KPKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKVGEILNK-I---DKDTLVIITGSTM  151 (374)
T ss_dssp             HHHH--H-HHH-CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCHHHHHTT-C---CTTEEEEEECBCT
T ss_pred             HHHH--H-HhC-CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe---------CCHHHHHhc-C---CCccEEEEEccCC
Confidence            9997  3 334 99999999998876544   677889988877         278888776 3   56788 8899999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||.  +.+++++|+++|++||+++|+||+|..+..+.. ......    .. ..+++++|+||.+  +|+|+||++  
T Consensus       152 nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~----~~-~~di~~~S~sK~l--~g~~~G~~~--  219 (374)
T 2aeu_A          152 DLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLF-NQPPAL----KL-GADLVVTSTDKLM--EGPRGGLLA--  219 (374)
T ss_dssp             TSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHT-TCCCHH----HH-TCSEEEEETTSSS--SSCSCEEEE--
T ss_pred             CCCCC--CcccHHHHHHHHHHcCCEEEEECCccccccccc-ccCCcc----cc-CCcEEEecCcccc--cCcceEEEE--
Confidence            99997  788999999999999999999999876531000 010011    11 2358899999985  578999985  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                       +++++++.            ++........+++.+.+.++...|..... +.+.+..++.+...++.++.+.+.|. .+
T Consensus       220 -~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~-~~  284 (374)
T 2aeu_A          220 -GKKELVDK------------IYIEGTKFGLEAQPPLLAGIYRALKNFNL-ERIRKAFERAKNFDLSKIEKLNKELK-AI  284 (374)
T ss_dssp             -EEHHHHHH------------HHHHHHTTTCBCCHHHHHHHHHHHHHCCH-HHHHHHHHHHHHCCCHHHHHHHHHHT-TT
T ss_pred             -ECHHHHHH------------HHHhhccccCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHhhh-hh
Confidence             67788777            44443333335667777777666643211 01111111111111122555666665 42


Q ss_pred             CCCCCcccc-cCCcceEEecCCCH--------HHHHHHHHcccEEEeCC-----C----eEEeccCCh--hhHHHHHHHH
Q 012238          400 KSGKDWSFI-LRQIGMFSFTGLNK--------AQSDNMTNKWHVYMTKD-----G----RISLAGLSL--AKCEYLADAI  459 (467)
Q Consensus       400 g~~~~~~~~-~~~~g~f~~~~l~~--------~~~~~ll~~~gI~v~~g-----g----Ris~~~~~~--~~i~~~~~~l  459 (467)
                      .-..++.+. .+.+.+|.|.....        +++.++++++||.+.||     +    ||+++..+.  .+++++.++|
T Consensus       285 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l  364 (374)
T 2aeu_A          285 DDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAI  364 (374)
T ss_dssp             CTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHH
T ss_pred             hhccCcceeeCCceEEEEeecccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHH
Confidence            100013443 45555556654432        15567777789999886     1    999975322  3489999999


Q ss_pred             HHHHHhc
Q 012238          460 IDSYHNV  466 (467)
Q Consensus       460 ~~~l~~~  466 (467)
                      +++++++
T Consensus       365 ~~~l~~~  371 (374)
T 2aeu_A          365 VESIKMA  371 (374)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988765

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.96  E-value=9.5e-28  Score=238.52  Aligned_cols=321  Identities=13%  Similarity=0.019  Sum_probs=212.9

Q ss_pred             CCCCCCCchHHHHHHHHHHHhcCCC---CcCC----CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHH
Q 012238           95 TEELQPYVLDVVKKAENLMLERGEN---KEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLA  167 (467)
Q Consensus        95 d~~~~p~~~~~v~~a~~~~~~~~~~---~~Y~----~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~  167 (467)
                      |.+...++++.+.+++.+.+.....   ..|.    ......++++.+++++...      +++|++  |+|+++++.++
T Consensus         5 d~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~------~~~i~~--~~g~~~a~~~~   76 (382)
T 4hvk_A            5 DYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG------GGTVVF--TSGATEANNLA   76 (382)
T ss_dssp             BTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCT------TEEEEE--ESSHHHHHHHH
T ss_pred             cCCCcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCC------cCeEEE--ECCchHHHHHH
Confidence            3334444578899999888754210   1121    1233557888888886432      678988  99999999998


Q ss_pred             HHHHHHh----CCCCEEEEcCCCCcchHHHHhh---CCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          168 AALIERY----FPGAKVLISSPTWGNHKNIFND---ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       168 ~~~l~~~----~~gd~Vlv~~P~y~~~~~~~~~---~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      .  ....    .+||+|+++.|+|+.+...++.   .|++++.++++  .++.+|++.+++.++   ++++++++++|+|
T Consensus        77 ~--~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~n  149 (382)
T 4hvk_A           77 I--IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG--KYGEVDVSFIDQKLR---DDTILVSVQHANN  149 (382)
T ss_dssp             H--HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBC--TTSCBCHHHHHHHCC---TTEEEEECCSBCT
T ss_pred             H--HHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccC--CCCCcCHHHHHHHhc---cCceEEEEECCCC
Confidence            3  3334    7999999999999988775544   69999999984  456799999999987   5788999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      |||.+.+.+   +|+++|++||+ +|+|++|......   .+   ..    .....+++.|+||.+|++|  +|+++  +
T Consensus       150 ptG~~~~~~---~i~~l~~~~~~-li~D~a~~~~~~~---~~---~~----~~~~d~~~~s~~K~~g~~g--~g~~~--~  211 (382)
T 4hvk_A          150 EIGTIQPVE---EISEVLAGKAA-LHIDATASVGQIE---VD---VE----KIGADMLTISSNDIYGPKG--VGALW--I  211 (382)
T ss_dssp             TTCBBCCHH---HHHHHHSSSSE-EEEECTTTBTTBC---CC---HH----HHTCSEEEEESGGGTSCTT--CEEEE--E
T ss_pred             CceeeCCHH---HHHHHHHHcCE-EEEEhHHhcCCCC---CC---ch----hcCCCEEEEeHHHhcCCCc--eEEEE--E
Confidence            999999855   77777999999 9999996532211   11   11    1124588999999988777  56665  2


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      .++..+..        ...............++...+.++..++.   +   ..+.+++.+++++++++++.+.|+ +++
T Consensus       212 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~al~---~---~~~~~~~~~~~~~~~~~~l~~~L~-~~~  276 (382)
T 4hvk_A          212 RKEAKLQP--------VILGGGQENGLRSGSENVPSIVGFGKAAE---I---TAMEWREEAERLRRLRDRIIDNVL-KIE  276 (382)
T ss_dssp             ETTCCCCC--------SSCSSCTGGGTSCSCCCHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHT-TST
T ss_pred             cCccCcCc--------ccccCCCcCccccCCcCHHHHHHHHHHHH---H---HHhhHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            32211111        00000000011122334444444444432   1   134577889999999999999998 763


Q ss_pred             CCCCcccccCCc----ceEEe--cCCCHHHHHHHHHcccEEEeCC-------------------------C--eEEecc-
Q 012238          401 SGKDWSFILRQI----GMFSF--TGLNKAQSDNMTNKWHVYMTKD-------------------------G--RISLAG-  446 (467)
Q Consensus       401 ~~~~~~~~~~~~----g~f~~--~~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ris~~~-  446 (467)
                      .   +.+..+.+    +++.+  .+.+.+.+.+.++++||.+.+|                         +  ||+++. 
T Consensus       277 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~  353 (382)
T 4hvk_A          277 E---SYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRY  353 (382)
T ss_dssp             T---EEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTT
T ss_pred             C---eEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCC
Confidence            1   45554432    22222  2455555555555679999874                         3  999884 


Q ss_pred             CChhhHHHHHHHHHHHHHhc
Q 012238          447 LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       447 ~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .+++++++++++|+++++++
T Consensus       354 ~t~e~i~~~~~~l~~~~~~~  373 (382)
T 4hvk_A          354 NTDEDVDRLLEVLPGVIERL  373 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHH
Confidence            36789999999999998754

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.95  E-value=6.2e-27  Score=237.73  Aligned_cols=335  Identities=13%  Similarity=0.061  Sum_probs=212.5

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.+|++.|.+...-+.  .+|.|.+++.+.+.......| +.....+|++++++++. .      +++|++  ++||+
T Consensus        54 g~~ylD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~-~------~~~v~~--~~sGs  121 (434)
T 3l44_A           54 GNKYIDYLAAYGPIITGH--AHPHITKAITTAAENGVLYGT-PTALEVKFAKMLKEAMP-A------LDKVRF--VNSGT  121 (434)
T ss_dssp             CCEEEECCGGGTTCSSCB--TCHHHHHHHHHHHHHCSCCSS-CCHHHHHHHHHHHHHCT-T------CSEEEE--ESSHH
T ss_pred             CCEEEECCCchhccccCC--CCHHHHHHHHHHHHhCcCCCC-CCHHHHHHHHHHHHhCC-C------CCEEEE--eCchH
Confidence            357899998875333333  378899999888765433444 66778889999999853 1      678999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCC-eEEeeeecCCCCC-------------CChhhHHHHHHcCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVG-------------LDFEGMIADIKAAP  227 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~-~~~v~~~~~~~~~-------------~d~~~l~~~l~~~~  227 (467)
                      +++.++..+.....++++|++..|+|..+...+...+.. ...+.. +...+.             .|++.+++.+++.+
T Consensus       122 ea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~  200 (434)
T 3l44_A          122 EAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGT-PDSAGVPQSIAQEVITVPFNNVETLKEALDKWG  200 (434)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCC-BSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCC-CCcCCCCCcCCCceEecCcccHHHHHHHHHhCC
Confidence            999998544333347789999999998765544333221 111111 000000             28999999987533


Q ss_pred             CCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc
Q 012238          228 GGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (467)
Q Consensus       228 ~~~~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (467)
                      +++.+++++.++|++|.+. +.+.+++|.++|++||+++|+||+|.+|..+    ..... .......+   +.+|||.+
T Consensus       201 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g----~~~~~-~~~~~~~d---i~t~sK~~  272 (434)
T 3l44_A          201 HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFM----YGGAQ-DLLGVTPD---LTALGKVI  272 (434)
T ss_dssp             GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSS----SSCHH-HHHTCCCS---EEEEEGGG
T ss_pred             CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceecc----ccHHH-HHcCCCCC---eeehhhhh
Confidence            4556666665566666655 8888999999999999999999999988322    11112 12222233   45789999


Q ss_pred             ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh---ccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012238          307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL---ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR  383 (467)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~  383 (467)
                      + +|+|+||++   +++++++.            +...   ......+.+.+++.++..+|+...      +  ++..++
T Consensus       273 ~-~G~~iG~~~---~~~~i~~~------------~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~------~--~~~~~~  328 (434)
T 3l44_A          273 G-GGLPIGAYG---GKKEIMEQ------------VAPLGPAYQAGTMAGNPASMASGIACLEVLQ------Q--EGLYEK  328 (434)
T ss_dssp             G-TTSSCEEEE---ECHHHHTT------------BTTTSSBCCCCTTTTCHHHHHHHHHHHHHHT------S--TTHHHH
T ss_pred             c-CCcCeeeEE---EcHHHHHh------------hccCCCcccCCCCCcCHHHHHHHHHHHHHHH------c--ccHHHH
Confidence            9 899999995   78888776            5432   122244667777777766654110      0  123333


Q ss_pred             HHHHHHHHHHHhhh---ccCCCCCcccccCCcceEEec--C--C---------C----HHHHHHHHHcccEEEeCCC---
Q 012238          384 IKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSFT--G--L---------N----KAQSDNMTNKWHVYMTKDG---  440 (467)
Q Consensus       384 ~~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f~~~--~--l---------~----~~~~~~ll~~~gI~v~~gg---  440 (467)
                      ++++++++.+.|++   ..+.   .....+.+.++.|.  +  .         +    .++.+.+++ +||.+.+++   
T Consensus       329 ~~~~~~~l~~~L~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~  404 (434)
T 3l44_A          329 LDELGATLEKGILEQAAKHNI---DITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQ-EGVNLAPSKYEA  404 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTC---CEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHH-TTEECCSSTTCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCC---CEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHH-CCeEEeecCCCc
Confidence            44444444444440   3332   22334455544331  1  0         1    234555655 599999986   


Q ss_pred             -eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          441 -RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 -Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                       |+++.. +++++++++++|+++++++
T Consensus       405 ~rl~~~~-t~e~i~~~l~~l~~~l~~~  430 (434)
T 3l44_A          405 WFLTTEH-TKEDIEYTIEAVGRAFAAL  430 (434)
T ss_dssp             EECCTTC-CHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccc-CHHHHHHHHHHHHHHHHHH
Confidence             776555 8999999999999998764

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.95  E-value=2.8e-27  Score=232.68  Aligned_cols=317  Identities=11%  Similarity=0.002  Sum_probs=211.6

Q ss_pred             chHHHHHHHHHHHhcCCCCcCC-CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEE
Q 012238          102 VLDVVKKAENLMLERGENKEYL-PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV  180 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~V  180 (467)
                      +++.+.+++.+.+..   +.|. ...+..++|+++++++...    .+++++++  |+||++++.++   +..+.+ |+|
T Consensus        11 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~g~~----~~~~~v~~--t~g~t~a~~~~---~~~~~~-d~v   77 (353)
T 2yrr_A           11 IPERVQKALLRPMRG---HLDPEVLRVNRAIQERLAALFDPG----EGALVAAL--AGSGSLGMEAG---LANLDR-GPV   77 (353)
T ss_dssp             CCHHHHGGGGSCCCC---TTCHHHHHHHHHHHHHHHHHHCCC----TTCEEEEE--SSCHHHHHHHH---HHTCSC-CCE
T ss_pred             CCHHHHHHHhccccc---ccCHHHHHHHHHHHHHHHHHhCCC----CCCceEEE--cCCcHHHHHHH---HHHhcC-CcE
Confidence            378888887665532   2231 2356899999999997432    23568888  99999999997   333444 899


Q ss_pred             EEcCCCCcch--HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 012238          181 LISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI  258 (467)
Q Consensus       181 lv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~  258 (467)
                      ++++|+|+.+  ...++..|++++.++.+  .++.+|++.+++.+++.  +++++++++|+||||.+++.   ++|.++|
T Consensus        78 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~~---~~i~~l~  150 (353)
T 2yrr_A           78 LVLVNGAFSQRVAEMAALHGLDPEVLDFP--PGEPVDPEAVARALKRR--RYRMVALVHGETSTGVLNPA---EAIGALA  150 (353)
T ss_dssp             EEEECSHHHHHHHHHHHHTTCCEEEEECC--TTSCCCHHHHHHHHHHS--CCSEEEEESEETTTTEECCH---HHHHHHH
T ss_pred             EEEcCCCchHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHHHHHHhC--CCCEEEEEccCCCcceecCH---HHHHHHH
Confidence            9999999875  45667899999999984  35679999999999842  56688889999999999985   4777889


Q ss_pred             HhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC-cccCCCccceEEEecCCHHHHhhhhh-h-hHH
Q 012238          259 QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIGAMNVVCSSSDLAARCCE-V-AVI  335 (467)
Q Consensus       259 ~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG~~~~v~~~~~~~~~~~~-~-~~~  335 (467)
                      ++||+++|+||+|. +...  ..   .+..   . ...+++.|++|. ++++|  +||++   .++++++.-.. . .+.
T Consensus       151 ~~~~~~li~D~a~~-~~~~--~~---~~~~---~-~~d~~~~s~~K~~~~~~g--~G~~~---~~~~~~~~l~~~~~~~~  215 (353)
T 2yrr_A          151 KEAGALFFLDAVTT-LGML--PF---SMRA---M-GVDYAFTGSQKCLSAPPG--LAPIA---ASLEARKAFTGKRGWYL  215 (353)
T ss_dssp             HHHTCEEEEECTTT-TTTS--CC---CHHH---H-TCSEEECCTTSTTCCCSS--CEEEE---ECHHHHHHCCCCSCSTT
T ss_pred             HHcCCeEEEEcCcc-cccc--cc---cccc---c-CceEEEecCcccccCCCc--eEEEE---ECHHHHHHhccCCCccc
Confidence            99999999999985 3211  11   1211   1 234778899995 45566  69996   66776655000 0 000


Q ss_pred             HHHHHHHhh-ccCccCCCchHHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC--
Q 012238          336 QVKSQLKRL-ARPMYSNPPVHGARIVANVVGNPALFDEWKAE-MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ--  411 (467)
Q Consensus       336 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~--  411 (467)
                      ......... ......+++...+.++..++..      +.+. +++++++++++++++.+.|+ ++|    +++..+.  
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~  284 (353)
T 2yrr_A          216 DLARVAEHWERGGYHHTTPVLLHYALLEALDL------VLEEGVAARERRAREVYAWVLEELK-ARG----FRPYPKASP  284 (353)
T ss_dssp             CHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHH------HHHHCHHHHHHHHHHHHHHHHHHHH-HTT----CEESCSSSB
T ss_pred             cHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHHHHHHHH-HCC----CccccCccC
Confidence            000000000 1111234555555555444421      1222 66788999999999999998 765    4555443  


Q ss_pred             cceEEecC----CCHHH-HHHHHHcccEEEeCC------C--eEEe-ccCChhhHH-HHHHHHHHHHHh
Q 012238          412 IGMFSFTG----LNKAQ-SDNMTNKWHVYMTKD------G--RISL-AGLSLAKCE-YLADAIIDSYHN  465 (467)
Q Consensus       412 ~g~f~~~~----l~~~~-~~~ll~~~gI~v~~g------g--Ris~-~~~~~~~i~-~~~~~l~~~l~~  465 (467)
                      +++++|+.    .+.+. .+.+.+ +||.+.+|      +  ||++ ...++++++ +++++|+++++.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~  352 (353)
T 2yrr_A          285 LPTVLVVRPPEGVDADRLVRALYA-EGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL  352 (353)
T ss_dssp             CTTEEEEECCTTCCHHHHHHHHHH-TTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH-CCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence            45554443    34444 555555 59999875      2  9998 434778998 999999998764

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.95  E-value=4e-27  Score=237.26  Aligned_cols=318  Identities=11%  Similarity=-0.008  Sum_probs=217.3

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC--CcchHHHHHHHHHHHhCCCCcccccCcee-eeecCC
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVA-TVQGLS  159 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~-~~~t~g  159 (467)
                      +..+.|+-|.       ..+++.+.+++.+.    ....|.+  .....++++.+++++...      +++++ +  ++|
T Consensus        10 ~~~~~~~p~p-------~~~~~~v~~a~~~~----~~~~~~~~~~~~~~~l~~~la~~~g~~------~~~~~~~--~~s   70 (416)
T 3isl_A           10 PLRTIMTPGP-------VEVDPRVLRVMSTP----VVGQFDPAFTGIMNETMEMLRELFQTK------NRWAYPI--DGT   70 (416)
T ss_dssp             CCCEECSSSS-------CCCCHHHHHHTTSC----CCCTTSHHHHHHHHHHHHHHHHHTTCC------CSEEEEE--ESC
T ss_pred             ccceeecCCC-------cCcCHHHHHHhccc----CCCCccHHHHHHHHHHHHHHHHHhCCC------CCcEEEe--cCc
Confidence            3556666432       22367777665442    1122322  344678888888886532      44554 5  889


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcc--hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~  237 (467)
                      +++++.++  +...+.+||+|+++.|+|..  +...++..|++++.++.+  .++.+|++.+++.+++  ++++++++++
T Consensus        71 ~t~al~~~--~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~--~~~~~v~~~~  144 (416)
T 3isl_A           71 SRAGIEAV--LASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECE--WGTVFDPEDIIREIKK--VKPKIVAMVH  144 (416)
T ss_dssp             HHHHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHH--HCCSEEEEES
T ss_pred             HHHHHHHH--HHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecC--CCCCCCHHHHHHHHhh--CCCcEEEEEc
Confidence            99999998  44457799999999999987  777889999999999984  3567899999999974  3567889999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC-cccCCCccceE
Q 012238          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIGAM  316 (467)
Q Consensus       238 p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG~~  316 (467)
                      ||||||.+++   +++|+++|++||+++|+|++|......   .+.       ......+++.|++|. ++.+  ++|++
T Consensus       145 ~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~---~~~-------~~~~~d~~~~s~~K~l~g~~--g~g~~  209 (416)
T 3isl_A          145 GETSTGRIHP---LKAIGEACRTEDALFIVDAVATIGGCE---VKV-------DEWKIDAAIGGTQKCLSVPS--GMAPI  209 (416)
T ss_dssp             EETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTTTSC---CCT-------TTTTCSEEECCSSSTTCCCS--SEEEE
T ss_pred             cCCCCceecC---HHHHHHHHHHcCCEEEEECCccccCCC---cch-------hhcCCCEEEecCccccCCCC--CeEEE
Confidence            9999999998   557888899999999999997533221   111       111346889999997 4544  47998


Q ss_pred             EEecCCHHHHhhhhhhhHHHHHHHHHhh--------------------------------------ccCccCCCchHHHH
Q 012238          317 NVVCSSSDLAARCCEVAVIQVKSQLKRL--------------------------------------ARPMYSNPPVHGAR  358 (467)
Q Consensus       317 ~~v~~~~~~~~~~~~~~~~~~~~~l~~~--------------------------------------~~~~~~~~~~~~~~  358 (467)
                      +   .++++++.            +...                                      .......++...+.
T Consensus       210 ~---~~~~~~~~------------~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (416)
T 3isl_A          210 T---YNERVADV------------IAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLY  274 (416)
T ss_dssp             E---ECHHHHHH------------HHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHH
T ss_pred             E---ECHHHHHH------------hhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHH
Confidence            5   67777765            3211                                      11112234555544


Q ss_pred             HHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCc---ceEEec----CCCH-HHHHHHH
Q 012238          359 IVANVVGNPALFDEWKAE-MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQI---GMFSFT----GLNK-AQSDNMT  429 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~-l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~---g~f~~~----~l~~-~~~~~ll  429 (467)
                      ++..++..      +.+. +++.+++++++++++.+.|+ +.|    +++..+.+   +.++++    +.+. ++.+.++
T Consensus       275 a~~~al~~------~~~~g~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  343 (416)
T 3isl_A          275 ALREGVRL------VLEEGLETRFERHRHHEAALAAGIK-AMG----LRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLL  343 (416)
T ss_dssp             HHHHHHHH------HHHHCHHHHHHHHHHHHHHHHHHHH-HTT----CCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHH
T ss_pred             HHHHHHHH------HHHhhHHHHHHHHHHHHHHHHHHHH-HcC----CEeccCccccCCcEEEEeCCCCCCHHHHHHHHH
Confidence            44444421      1233 67889999999999999999 766    45555543   334443    2344 4466666


Q ss_pred             HcccEEEeCC------C--eEEec-cCChhh-HHHHHHHHHHHHHhc
Q 012238          430 NKWHVYMTKD------G--RISLA-GLSLAK-CEYLADAIIDSYHNV  466 (467)
Q Consensus       430 ~~~gI~v~~g------g--Ris~~-~~~~~~-i~~~~~~l~~~l~~~  466 (467)
                      +++||.+.+|      +  ||++. ..++++ +++++++|+++++++
T Consensus       344 ~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~  390 (416)
T 3isl_A          344 AQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH  390 (416)
T ss_dssp             HHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred             HhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence            6669999875      2  99983 235556 999999999998764

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.95  E-value=2.7e-27  Score=240.08  Aligned_cols=343  Identities=12%  Similarity=0.018  Sum_probs=202.0

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      .+.+||+.|.+.+.-+.  .+|.+.+++.+.+...  ..|.+..+..+.++++++++....+  .+.++|++  |+||++
T Consensus        29 ~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~--~~gg~e  100 (430)
T 3i4j_A           29 RRYLDGSSGALVANIGH--GRAEVGERMAAQAARL--PFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWA--VSGGSE  100 (430)
T ss_dssp             CEEEETTHHHHTCTTCB--CCHHHHHHHHHHHHHC--CCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEE--ESSHHH
T ss_pred             CEEEECCCchhccccCC--CCHHHHHHHHHHHHhc--ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCcHHH
Confidence            47899998865333332  2678888888877542  2232223333344444444433222  22578999  999999


Q ss_pred             HHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHHhhCCC---------------CeEEeeeecC-CCCCCChhhHH
Q 012238          163 SLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARV---------------PWSEYRYYDP-KTVGLDFEGMI  220 (467)
Q Consensus       163 al~l~~~~l~~~------~~gd~Vlv~~P~y~~~~~~~~~~G~---------------~~~~v~~~~~-~~~~~d~~~l~  220 (467)
                      ++.++.+++...      .++|+|++.+|+|..+...+...+.               .+..++..+. ..+..|++.|+
T Consensus       101 a~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le  180 (430)
T 3i4j_A          101 ATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLR  180 (430)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHH
Confidence            999984443322      4578999999999988765544433               2223332100 00123668899


Q ss_pred             HHHHcCC-CCcEEEEeCCCCC-CCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcCCeE
Q 012238          221 ADIKAAP-GGSFILLHGCAHN-PTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMEL  296 (467)
Q Consensus       221 ~~l~~~~-~~~~~i~i~~p~N-PTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~  296 (467)
                      +.+++.. .++.+++++.++| ++|. .++.+++++|.++|++||+++|+||+|.+|...+.   .... ... ...+++
T Consensus       181 ~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~---~~~~-~~~~~~~~di  256 (430)
T 3i4j_A          181 ALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS---PLAL-SRWSGVTPDI  256 (430)
T ss_dssp             HHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG-GGTTTCCCSE
T ss_pred             HHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc---hhhh-hhhcCCCCcE
Confidence            8887422 3455666666666 8887 66888899999999999999999999998865421   1111 111 112233


Q ss_pred             EEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh----ccCccCCCchHHHHHHHHHhCChhhHH
Q 012238          297 LVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL----ARPMYSNPPVHGARIVANVVGNPALFD  371 (467)
Q Consensus       297 i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~L~~~~~~~  371 (467)
                         .+|||.++ .| +|+||++   +++++++.            +...    ......+.+.+++.++..+|+...-  
T Consensus       257 ---~t~sK~l~-~G~~r~G~~~---~~~~i~~~------------~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--  315 (430)
T 3i4j_A          257 ---AVLGKGLA-AGYAPLAGLL---AAPQVYET------------VMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVER--  315 (430)
T ss_dssp             ---EEECGGGT-TTSSCCEEEE---ECHHHHHH------------HHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHH--
T ss_pred             ---EEEccccc-CCccccEEEE---ECHHHHHH------------HhccCCcccccCCCCCCHHHHHHHHHHHHHHHc--
Confidence               36899999 59 9999995   78888877            6542    2223446777888887777652210  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-C-------------HHHHHHHHHcccEEEe
Q 012238          372 EWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-N-------------KAQSDNMTNKWHVYMT  437 (467)
Q Consensus       372 ~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-~-------------~~~~~~ll~~~gI~v~  437 (467)
                        ++.++..++..+..++.+.+.+. .++.   +....+.|. |+++.+ +             .++.+.+++ +||.+.
T Consensus       316 --~~~~~~~~~~~~~~~~~l~~~~~-~~~~---~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~  387 (430)
T 3i4j_A          316 --EDLTGAAKERGAQLLAGLQALQA-RFPQ---MMQVRGTGL-LLGVVLGDLATGQAFETPGIASRIGAAALK-RGLITY  387 (430)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHHH-HCTT---EEEEEEETT-EEEEEEC------------CHHHHHHHHHH-TTEECC
T ss_pred             --ccHHHHHHHHHHHHHHHHHHHHH-hCCC---eEEEEEEEE-EEEEEeccccccCCCccHHHHHHHHHHHHh-CCCEEE
Confidence              11123333334444444444443 3321   344555555 444422 1             234556665 699999


Q ss_pred             CC--------C---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          438 KD--------G---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       438 ~g--------g---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ++        +   ||+++ ..+++++++++++|+++++++
T Consensus       388 ~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  428 (430)
T 3i4j_A          388 PGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV  428 (430)
T ss_dssp             -----------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            87        2   88876 348899999999999998764

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.95  E-value=1.6e-26  Score=233.76  Aligned_cols=330  Identities=10%  Similarity=-0.006  Sum_probs=215.0

Q ss_pred             CCcEEecCcccCCCCCCCCc-hHHHHHHHHHHHhcCCC---CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           83 EKKLNLGVGAYRTEELQPYV-LDVVKKAENLMLERGEN---KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~-~~~v~~a~~~~~~~~~~---~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      ...+|++.|.+..  ...+. +|.+.+++.+.+.....   ..| +.....++++.+++++.    ... +++|++  |+
T Consensus        42 ~~~lD~~~~~~~~--~lG~~~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~----~~~-~~~v~~--~~  111 (419)
T 2eo5_A           42 NKYLDFTSGIGVN--NLGWPSHPEVIKIGIEQMQKLAHAAANDF-YNIPQLELAKKLVTYSP----GNF-QKKVFF--SN  111 (419)
T ss_dssp             CEEEESSGGGGTT--TTCBSCCHHHHHHHHHHHTTSCCCSCSCS-CCHHHHHHHHHHHHHSS----CSS-CEEEEE--ES
T ss_pred             CEEEEccCChhhh--ccCCCCCHHHHHHHHHHHhhCcccccccc-CCHHHHHHHHHHHHhCC----CCc-CCEEEE--eC
Confidence            4689999887511  12222 68899999888754321   123 33445667777777742    222 568999  99


Q ss_pred             CchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-HHhhC-------------CCCeEEeeeecCC--CCC---------
Q 012238          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN-IFNDA-------------RVPWSEYRYYDPK--TVG---------  213 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~-~~~~~-------------G~~~~~v~~~~~~--~~~---------  213 (467)
                      ||++++.++.+++.. .+||+|++++|+|..+.. .+...             +..++.+|..+..  .++         
T Consensus       112 gg~ea~~~ai~~~~~-~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~  190 (419)
T 2eo5_A          112 SGTEAIEASIKVVKN-TGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSE  190 (419)
T ss_dssp             SHHHHHHHHHHHHHT-TSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHH
T ss_pred             chHHHHHHHHHHHHH-hhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchh
Confidence            999999998433211 148999999999975433 22222             1356677663211  112         


Q ss_pred             ---CChhhHH-HHHHcCC--CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012238          214 ---LDFEGMI-ADIKAAP--GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (467)
Q Consensus       214 ---~d~~~l~-~~l~~~~--~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~  286 (467)
                         +|++.++ +.+++..  +++++++++..|||||. +++.+++++|.++|++||+++|+||+|.+|...+.   ....
T Consensus       191 ~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~---~~~~  267 (419)
T 2eo5_A          191 LVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK---LFAI  267 (419)
T ss_dssp             HHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG
T ss_pred             hHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc---hhhH
Confidence               3688898 8887421  24455554434567896 67889999999999999999999999998865321   1111


Q ss_pred             HHHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhC
Q 012238          287 RLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVG  365 (467)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~  365 (467)
                       ......++++   ||||.++ .| +|+||++   ++++++ .            + ........+.+.+++.++..+|+
T Consensus       268 -~~~~~~~d~~---t~sK~~~-~G~~riG~~~---~~~~~~-~------------~-~~~~~~t~~~n~~~~~aa~aal~  325 (419)
T 2eo5_A          268 -ENFNTVPDVI---TLAKALG-GGIMPIGATI---FRKDLD-F------------K-PGMHSNTFGGNALACAIGSKVID  325 (419)
T ss_dssp             -GGGTCCCSEE---EECGGGG-TTTSCCEEEE---EEGGGC-C------------C-------CCCCCHHHHHHHHHHHH
T ss_pred             -HhcCCCCCEE---Eeccccc-CCccceEEEE---EchHhh-c------------C-CcccCCCCCCCHHHHHHHHHHHH
Confidence             1112233433   7999999 59 9999996   566666 6            3 11112244567778878777764


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-C----HHHHHHHHHcccEEEeCCC
Q 012238          366 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-N----KAQSDNMTNKWHVYMTKDG  440 (467)
Q Consensus       366 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-~----~~~~~~ll~~~gI~v~~gg  440 (467)
                      .          +++..++++++++++.+.|+ ++ +    ....+.| .|+|+.+ .    .++.+.++ ++||.+.++|
T Consensus       326 ~----------~~~~~~~~~~~~~~l~~~L~-~~-~----~~~~~~g-~~~~i~~~~~~~~~~~~~~l~-~~Gv~v~~~~  387 (419)
T 2eo5_A          326 I----------VKDLLPHVNEIGKIFAEELQ-GL-A----DDVRGIG-LAWGLEYNEKKVRDRIIGESF-KRGLLLLPAG  387 (419)
T ss_dssp             H----------HHHHHHHHHHHHHHHHHHHT-TS-S----SEEEEET-TEEEEECSCHHHHHHHHHHHH-HTTEECEEET
T ss_pred             H----------HHHHHHHHHHHHHHHHHHHH-Hh-h----hheEeee-EEEEEEEecCccHHHHHHHHH-HCCCEEecCC
Confidence            2          12277888899999999998 65 1    2334554 4656655 2    23455565 5699999874


Q ss_pred             ----eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          441 ----RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 ----Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                          ||+++ ..+++++++++++|+++++++
T Consensus       388 ~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~  418 (419)
T 2eo5_A          388 RSAIRVIPPLVISEEEAKQGLDILKKVIKVV  418 (419)
T ss_dssp             TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence                88654 238899999999999998765

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.95  E-value=2.7e-26  Score=230.38  Aligned_cols=229  Identities=13%  Similarity=0.076  Sum_probs=165.8

Q ss_pred             EEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC--CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238           86 LNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (467)
Q Consensus        86 i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (467)
                      -++++|.| |....+++.+.+.+++....+....+.|.  +..+..++++.+++++..       + +.++  +.+|+++
T Consensus        23 ~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~-------~-~~i~--~~sG~~a   91 (398)
T 2rfv_A           23 STGALSTP-IFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERG-------E-AGLA--TASGISA   91 (398)
T ss_dssp             TTCCSSCC-CCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTC-------S-EEEE--ESSHHHH
T ss_pred             CCCCcCCC-CcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCC-------C-cEEE--ECCHHHH
Confidence            35778877 44444455666766665222221123443  567789999999999642       2 4444  5677899


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       164 l~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      +.++  +...+.+||+|+++.|+|..+...+    +..|++++.++.       .|++.+++.++   ++++++++++|+
T Consensus        92 ~~~~--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~i~---~~~~~v~~~~~~  159 (398)
T 2rfv_A           92 ITTT--LLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA-------AKPEEIRAAMR---PETKVVYIETPA  159 (398)
T ss_dssp             HHHH--HHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECT-------TSHHHHHHHCC---TTEEEEEEESSB
T ss_pred             HHHH--HHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCC-------CCHHHHHHhcC---CCCeEEEEECCC
Confidence            9997  4445679999999999999887776    788999988876       28899999887   578899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCcc-ceEEE
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNV  318 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~  318 (467)
                      ||||.+++   +++|+++|+++|+++|+||+|..+.++.    .  .    .. ..++++.|+||.++.+|+|+ ||++ 
T Consensus       160 nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~----~--~----~~-~~di~~~s~sK~~~~~g~~~~G~~~-  224 (398)
T 2rfv_A          160 NPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ----P--L----QL-GADIVVHSVTKYINGHGDVIGGIIV-  224 (398)
T ss_dssp             TTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC----G--G----GG-TCSEEEEETTTTTTCSSCCCCEEEE-
T ss_pred             CCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC----c--h----hh-CCcEEEEeCcccccCCCCceEEEEE-
Confidence            99999997   6688888999999999999998766531    1  1    11 35788999999999999999 9985 


Q ss_pred             ecCCHHHHh-hhhhhhHHHHHHHHHhhccCc-cCCCchHHHHHHHHHhCC
Q 012238          319 VCSSSDLAA-RCCEVAVIQVKSQLKRLARPM-YSNPPVHGARIVANVVGN  366 (467)
Q Consensus       319 v~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~  366 (467)
                        .++++++ .            ++...... ..+.+.+.+.++...|+.
T Consensus       225 --~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~  260 (398)
T 2rfv_A          225 --GKQEFIDQA------------RFVGLKDITGGCMSPFNAWLTLRGVKT  260 (398)
T ss_dssp             --ECHHHHHHH------------HHTHHHHTTCCCCCHHHHHHHHHHHTT
T ss_pred             --ECHHHHHHH------------HHHHHHhCCCCCCCHHHHHHHHhhhhh
Confidence              6666665 3            33333222 345666777777777754

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.95  E-value=5.2e-26  Score=230.60  Aligned_cols=335  Identities=16%  Similarity=0.066  Sum_probs=218.8

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.|||+.|.+...-|.  .+|.+.+++.+.+...... |.+.....+|++++++++.+       .+++++  ++||+
T Consensus        52 g~~ylD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~~~-~~~~~~~~~l~~~la~~~~~-------~~~v~~--~~~Gs  119 (429)
T 3k28_A           52 GNEYIDYVLSWGPLIHGH--ANDRVVEALKAVAERGTSF-GAPTEIENKLAKLVIERVPS-------IEIVRM--VNSGT  119 (429)
T ss_dssp             CCEEEESCGGGTTCTTCB--SCHHHHHHHHHHHHHCSCC-SSCCHHHHHHHHHHHHHSTT-------CSEEEE--ESSHH
T ss_pred             CCEEEECCCChhhcccCC--CCHHHHHHHHHHHhhCcCc-CCCCHHHHHHHHHHHHhCCC-------CCEEEE--eCChH
Confidence            457999999876333333  3788999998887654333 44777888999999998531       578999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCCCeEEeeeecCCCCC------------CChhhHHHHHHcCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVG------------LDFEGMIADIKAAPG  228 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~------------~d~~~l~~~l~~~~~  228 (467)
                      +++..+..+.....++++|++.+|+|..+...+. ..|..+..++........            .|++.+++.+++.++
T Consensus       120 ea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~  199 (429)
T 3k28_A          120 EATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGD  199 (429)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCC
Confidence            9999985443333467899999999976544332 233322222221011100            189999999875434


Q ss_pred             CcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          229 GSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      ++.++++..++|++|.+. +.+++++|.++|++||+++|+||+|.+| ..+   ..... .......+   +.+|||.++
T Consensus       200 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g---~~~~~-~~~~~~~d---i~t~sK~~~  271 (429)
T 3k28_A          200 DIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVA---YNCGQ-GYYGVTPD---LTCLGKVIG  271 (429)
T ss_dssp             GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSS---TTHHH-HHHTCCCS---EEEECGGGG
T ss_pred             CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC---cchHH-HHhCCCCc---eehhhhhhc
Confidence            556666665556666655 5788999999999999999999999988 332   11122 22222233   347899998


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc---cCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA---RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  384 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~  384 (467)
                       .|+|+||++   +++++++.            +....   .....+.+.+++.++..+|+...         ++..+++
T Consensus       272 -~G~~iG~~~---~~~~~~~~------------~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~---------~~~~~~~  326 (429)
T 3k28_A          272 -GGLPVGAYG---GKAEIMRQ------------VAPSGPIYQAGTLSGNPLAMAAGYETLVQLT---------PESYVEF  326 (429)
T ss_dssp             -TTSCCEEEE---ECHHHHTT------------BTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC---------HHHHHHH
T ss_pred             -CCCCeEEEE---EcHHHHhh------------hccCCCccccCCCCCChHHHHHHHHHHHHHH---------HHHHHHH
Confidence             599999995   77888776            44321   22234677788888877776432         2445555


Q ss_pred             HHHHHHHHHHhhhcc----CCCCCcccccCCcceEEec--CC-----------C----HHHHHHHHHcccEEEeCCC---
Q 012238          385 KNVRQKLFDSLSAKD----KSGKDWSFILRQIGMFSFT--GL-----------N----KAQSDNMTNKWHVYMTKDG---  440 (467)
Q Consensus       385 ~~~r~~l~~~l~~~~----g~~~~~~~~~~~~g~f~~~--~l-----------~----~~~~~~ll~~~gI~v~~gg---  440 (467)
                      +++++++.+.|+ ++    +.   +....+.|.++.|.  +.           +    .++.+.+++ +||.+.++|   
T Consensus       327 ~~~~~~l~~~L~-~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~  401 (429)
T 3k28_A          327 ERKAEMLEAGLR-KAAEKHGI---PHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVE-QGVFLPPSQFEG  401 (429)
T ss_dssp             HHHHHHHHHHHH-HHHHHTTC---CCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTTSC
T ss_pred             HHHHHHHHHHHH-HHHhhCCC---CEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHH-CCeEEecCCCCC
Confidence            666666666665 43    32   22344555544332  10           1    334556665 599999975   


Q ss_pred             -eEEeccCChhhHHHHHHHHHHHHHhcC
Q 012238          441 -RISLAGLSLAKCEYLADAIIDSYHNVS  467 (467)
Q Consensus       441 -Ris~~~~~~~~i~~~~~~l~~~l~~~~  467 (467)
                       |+++.. +++++++++++|++++++++
T Consensus       402 ~r~~~~~-t~e~i~~~l~~l~~~l~~~~  428 (429)
T 3k28_A          402 LFLSTVH-SDADIEATIAAAEIAMSKLK  428 (429)
T ss_dssp             BCCCTTC-CHHHHHHHHHHHHHHHHTCC
T ss_pred             EEEECCC-CHHHHHHHHHHHHHHHHHHh
Confidence             887765 89999999999999998753

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.95  E-value=1.2e-26  Score=233.22  Aligned_cols=324  Identities=15%  Similarity=0.148  Sum_probs=215.3

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCc---chHH--HH-----HHHHHHHhCCCCcccccCce
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE---GLAA--FN-----KVTAELLFGADNSVLKEQRV  152 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~---G~~~--lr-----~aia~~l~~~~~~~~~~~~i  152 (467)
                      .+.|+|+.|.+      +. ++.+.+++.+.+.......|+...   |.+.  ++     +.+++++...      +++|
T Consensus        23 ~~~i~~~~~~~------~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~------~~~i   89 (407)
T 2dkj_A           23 REGLELIASEN------FV-SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA------WANV   89 (407)
T ss_dssp             HTSEECCTTCC------CC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS------EEEC
T ss_pred             hcceeeccCCC------CC-CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC------cceE
Confidence            37899998875      23 788999998877542234564332   4332  33     3666765322      4456


Q ss_pred             eeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcch---HHHHhhCCCCeEEeeee-cCCCCCCChhhHHHHHHcCCC
Q 012238          153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH---KNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPG  228 (467)
Q Consensus       153 ~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~---~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~  228 (467)
                      ++  ++ |++++.++  +...+.+||+|++++|+|..+   ...++..|..+..+++. +++++.+|++.+++.+++  .
T Consensus        90 ~~--~s-Gt~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~  162 (407)
T 2dkj_A           90 QP--HS-GSQANMAV--YMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALE--H  162 (407)
T ss_dssp             CC--SS-HHHHHHHH--HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHH--H
T ss_pred             Ee--cc-hHHHHHHH--HHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhh--c
Confidence            55  55 56699987  333467999999999999888   34555666655555553 234678999999999973  2


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC-CCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG-FASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      +++++++++|+||  ...+   +++|.++|++||+++|+||+|.. +.+.+....  ..    +  ..++++.|+||.  
T Consensus       163 ~~~~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~----~--~~di~~~s~sK~--  227 (407)
T 2dkj_A          163 RPKVIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PL----P--YAHVVTSTTHKT--  227 (407)
T ss_dssp             CCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CT----T--TCSEEEEESSGG--
T ss_pred             CCeEEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccCC--cc----c--cccEEEEecccc--
Confidence            4567777999998  4555   67888889999999999999986 443221110  00    1  246889999994  


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  386 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~  386 (467)
                      ++|+|+||++  +.++++++.            +......... .++.....++..+|...     ....+++.++++++
T Consensus       228 l~g~~~G~~~--~~~~~~~~~------------l~~~~~~~~~~~~~~~~~~a~~~al~~~-----~~~~~~~~~~~~~~  288 (407)
T 2dkj_A          228 LRGPRGGLIL--SNDPELGKR------------IDKLIFPGIQGGPLEHVIAGKAVAFFEA-----LQPEFKEYSRLVVE  288 (407)
T ss_dssp             GCCCSCEEEE--ESCHHHHHH------------HHHHHTTTTCSSCCHHHHHHHHHHHHHH-----HSHHHHHHHHHHHH
T ss_pred             CCCCCceEEE--ECCHHHHHH------------HHhhhcccccCCCcHHHHHHHHHHHHHH-----HHhhHHHHHHHHHH
Confidence            5689999996  333777776            4443333322 33332222333333211     02346788899999


Q ss_pred             HHHHHHHHhhhccCCCCCccccc-CCcceEEecCC-----CHHHHHHHHHcccEEEeCC------------C--eEEecc
Q 012238          387 VRQKLFDSLSAKDKSGKDWSFIL-RQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD------------G--RISLAG  446 (467)
Q Consensus       387 ~r~~l~~~l~~~~g~~~~~~~~~-~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g------------g--Ris~~~  446 (467)
                      +++++.+.|+ ++|    +++.. +..+.|+|+.+     +.+.+.+.+.++||.+.+|            +  ||+++.
T Consensus       289 ~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~  363 (407)
T 2dkj_A          289 NAKRLAEELA-RRG----YRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPA  363 (407)
T ss_dssp             HHHHHHHHHH-HTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHH
T ss_pred             HHHHHHHHHH-hCC----ceeecCCCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeeccc
Confidence            9999999999 776    45553 34566777643     4444444556679998863            1  999863


Q ss_pred             -----CChhhHHHHHHHHHHHHHh
Q 012238          447 -----LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       447 -----~~~~~i~~~~~~l~~~l~~  465 (467)
                           .+++++++++++|++++++
T Consensus       364 ~~~~~~~~~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          364 ITTRGFTPEEMPLVAELIDRALLE  387 (407)
T ss_dssp             HHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHHHhc
Confidence                 4889999999999998865

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.95  E-value=2.7e-26  Score=232.63  Aligned_cols=338  Identities=9%  Similarity=-0.012  Sum_probs=219.4

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC---CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN---KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~---~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      ...+|++.+.+.+.-+.  .+|.+.+++.+.+.....   ..| +.....++++.+++++..      ++++|++  |+|
T Consensus        43 ~~ylD~~~~~~~~~lg~--~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~------~~~~v~~--~~g  111 (429)
T 1s0a_A           43 RRLVDGMSSWWAAIHGY--NHPQLNAAMKSQIDAMSHVMFGGI-THAPAIELCRKLVAMTPQ------PLECVFL--ADS  111 (429)
T ss_dssp             CEEEESSTTTTTCTTCB--SCHHHHHHHHHHHHHCSCCCCSSE-ECHHHHHHHHHHHHHSCT------TCCEEEE--ESS
T ss_pred             CEEEEcCccHhhccCCC--CCHHHHHHHHHHHHhccccccccc-CCHHHHHHHHHHHHhCCC------CCCEEEE--eCC
Confidence            46889988875222222  378899999888754321   234 334457788888888532      3679999  999


Q ss_pred             chhHHHHHHHHHHHh-C----CCCEEEEcCCCCcchHHHH-hhCC-------------CCeEEeeeec---CCCC-CCCh
Q 012238          160 GTGSLRLAAALIERY-F----PGAKVLISSPTWGNHKNIF-NDAR-------------VPWSEYRYYD---PKTV-GLDF  216 (467)
Q Consensus       160 gt~al~l~~~~l~~~-~----~gd~Vlv~~P~y~~~~~~~-~~~G-------------~~~~~v~~~~---~~~~-~~d~  216 (467)
                      |+++++++.+.+..+ .    |||+|+++.|+|..+.... ...|             ..+..++...   +..+ .+|+
T Consensus       112 gtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  191 (429)
T 1s0a_A          112 GSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDM  191 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGG
T ss_pred             HHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHH
Confidence            999999984433221 2    5899999999998764432 2222             1344455421   1123 4899


Q ss_pred             hhHHHHHHcCCCCcEEEEeCCC-CCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012238          217 EGMIADIKAAPGGSFILLHGCA-HNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (467)
Q Consensus       217 ~~l~~~l~~~~~~~~~i~i~~p-~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~  294 (467)
                      +.+++.+++.++++++++++.. |||||. .++.+++++|+++|++||+++|+||+|.+|...+.   .... .......
T Consensus       192 ~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~---~~~~-~~~~~~~  267 (429)
T 1s0a_A          192 VGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK---LFAC-EHAEIAP  267 (429)
T ss_dssp             HHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG-GGGTCCC
T ss_pred             HHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch---HHHh-hhcCCCC
Confidence            9999998743235556655444 699996 55788899999999999999999999988754321   1111 1112223


Q ss_pred             eEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh-----ccCccCCCchHHHHHHHHHhCChh
Q 012238          295 ELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL-----ARPMYSNPPVHGARIVANVVGNPA  368 (467)
Q Consensus       295 ~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~L~~~~  368 (467)
                      +++   ||||.++ +| +|+||++   .++++++.            +...     ......+.+.+++.++..+|+.. 
T Consensus       268 d~~---t~sK~l~-~G~~~iG~~~---~~~~~~~~------------l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~-  327 (429)
T 1s0a_A          268 DIL---CLGKALT-GGTMTLSATL---TTREVAET------------ISNGEAGCFMHGPTFMGNPLACAAANASLAIL-  327 (429)
T ss_dssp             SEE---EECGGGG-TSSSCCEEEE---ECHHHHHH------------HHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHH-
T ss_pred             CEE---Eeccccc-CCCccceEEE---eCHHHHHH------------hhcCCCcccccCCCCCCCHHHHHHHHHHHHHH-
Confidence            433   7899998 68 9999996   67777776            5442     12223456777777776665321 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceEEecCC----CH-HHHHHHHHcccEEEeCCC--
Q 012238          369 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKDG--  440 (467)
Q Consensus       369 ~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~gg--  440 (467)
                           .+  +...++++++++++.+.|+ +++ .|. +....+.+ .|+|+.+    +. ++.+.+++ +||.+.+++  
T Consensus       328 -----~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~-~~~~~~~g-~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~~  396 (429)
T 1s0a_A          328 -----ES--GDWQQQVADIEVQLREQLA-PARDAEM-VADVRVLG-AIGVVETTHPVNMAALQKFFVE-QGVWIRPFGKL  396 (429)
T ss_dssp             -----HT--CHHHHHHHHHHHHHHHHHG-GGGGCTT-EEEEEEET-TEEEEEESSCBCHHHHHHHHHH-TTEECCCBTTE
T ss_pred             -----Hh--CCHHHHHHHHHHHHHHHHH-HHhcCCC-EEEEEEee-EEEEEEECCcccHHHHHHHHHH-CCCEEeccCCE
Confidence                 11  1345667778888888888 652 222 33334444 4666533    34 34556664 699999865  


Q ss_pred             -eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          441 -RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 -Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                       ||+++ ..+++++++++++|+++++++
T Consensus       397 iRis~~~~~t~e~i~~~~~~l~~~~~~~  424 (429)
T 1s0a_A          397 IYLMPPYIILPQQLQRLTAAVNRAVQDE  424 (429)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence             88854 238899999999999987654

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.95  E-value=6.7e-27  Score=237.82  Aligned_cols=340  Identities=11%  Similarity=-0.030  Sum_probs=212.4

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.+||+.|.+...-+.  .+|.+.+++.+.+...  ..|....|..++++++++++....+... ++++++  |+||+
T Consensus        42 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~--~~ggs  114 (439)
T 3dxv_A           42 GRELIDLSGAWGAASLGY--GHPAIVAAVSAAAANP--AGATILSASNAPAVTLAERLLASFPGEG-THKIWF--GHSGS  114 (439)
T ss_dssp             SCEEEESSTTTTTCTTCB--SCHHHHHHHHHHHHSC--SCSCSSSSEEHHHHHHHHHHHHTTTCTT-TEEEEE--ESSHH
T ss_pred             CCEEEECCCchhhccCCC--CCHHHHHHHHHHHHhc--cCccccccCCHHHHHHHHHHHHhCCCCC-CCEEEE--eCCHH
Confidence            347899999987333332  3788999998887653  3344344555566666666554432211 168988  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhC-CCCe--------------EEeeeecCCCCCC-----ChhhHHH
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-RVPW--------------SEYRYYDPKTVGL-----DFEGMIA  221 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~-G~~~--------------~~v~~~~~~~~~~-----d~~~l~~  221 (467)
                      +++..+.++...+.++++|++.+|+|..+....... |...              ..++..  ..+..     |++.|++
T Consensus       115 ea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~le~  192 (439)
T 3dxv_A          115 DANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYR--PYRNDPTGDAILTLLTE  192 (439)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSS--CBTTBTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCC--cccccccHHHHHHHHHH
Confidence            999998443322456789999999996654444333 3221              222221  11111     6899999


Q ss_pred             HHH-cCCCCcEEEEeCCCCCCCCCCCCH-HHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012238          222 DIK-AAPGGSFILLHGCAHNPTGIDPTP-EQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (467)
Q Consensus       222 ~l~-~~~~~~~~i~i~~p~NPTG~~~~~-~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (467)
                      .++ ..+++++++++++++|++|.+.+. +.+++|.++|++||+++|+||+|.+|...+.   .... .......+++  
T Consensus       193 ~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~---~~~~-~~~~~~~di~--  266 (439)
T 3dxv_A          193 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR---LHCF-EHEGFVPDIL--  266 (439)
T ss_dssp             HHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS---SSGG-GGTTCCCSEE--
T ss_pred             HHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch---hhHH-HhcCCCCCEE--
Confidence            994 223567888888888898887654 4499999999999999999999998754321   1111 1112223433  


Q ss_pred             ecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM  379 (467)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~  379 (467)
                       ||||.++ +|+|+||++   +++++++.            +......... .+.+++.++..+|+...      +  +.
T Consensus       267 -s~sK~~~-~G~riG~~~---~~~~~~~~------------~~~~~~~~t~-~~~~~~~aa~aal~~~~------~--~~  320 (439)
T 3dxv_A          267 -VLGKGLG-GGLPLSAVI---APAEILDC------------ASAFAMQTLH-GNPISAAAGLAVLETID------R--DD  320 (439)
T ss_dssp             -EECGGGG-TTSCCEEEE---EEHHHHTS------------CSSSSCCTTT-TCHHHHHHHHHHHHHHH------H--TT
T ss_pred             -EEcchhc-CCcceEEEE---ECHHHHhh------------hcCCCcCCCc-ccHHHHHHHHHHHHHHH------h--cC
Confidence             9999999 699999995   77887776            5443323334 66777777766654211      0  23


Q ss_pred             HHHHHHHHHHHHHHHhhhccC--CCCCcccccCCcceEEecCC-------------CHHHHHHHHHcccEEEeCCC----
Q 012238          380 MAGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFSFTGL-------------NKAQSDNMTNKWHVYMTKDG----  440 (467)
Q Consensus       380 ~~~~~~~~r~~l~~~l~~~~g--~~~~~~~~~~~~g~f~~~~l-------------~~~~~~~ll~~~gI~v~~gg----  440 (467)
                      ..++++++++++.+.|+ ++.  .+. +....+.|. |+|+.+             ..++.+.+++ +||.+.++|    
T Consensus       321 ~~~~~~~~~~~~~~~l~-~~~~~~~~-~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~  396 (439)
T 3dxv_A          321 LPAMAERKGRLLRDGLS-ELAKRHPL-IGDIRGRGL-ACGMELVCDRQSREPARAETAKLIYRAYQ-LGLVVYYVGMNGN  396 (439)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHHCTT-EEEEEEETT-EEEEEEEEETTTTEECHHHHHHHHHHHHH-HTEECEEESTTSC
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHhCCC-eEEEEEEEE-EEEEEEecCccccCCCHHHHHHHHHHHHH-CCcEEeecCCCCC
Confidence            34444455555555554 321  111 333445544 544422             1234566665 499999874    


Q ss_pred             --eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          441 --RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 --Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                        ||+++. .+++++++++++|+++++++
T Consensus       397 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  425 (439)
T 3dxv_A          397 VLEFTPPLTITETDIHKALDLLDRAFSEL  425 (439)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence              776542 37899999999999998765

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.95  E-value=7.3e-28  Score=241.54  Aligned_cols=309  Identities=13%  Similarity=0.053  Sum_probs=191.8

Q ss_pred             CchHHHHHHHHHHHhcC---CCCcCC----CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH
Q 012238          101 YVLDVVKKAENLMLERG---ENKEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER  173 (467)
Q Consensus       101 ~~~~~v~~a~~~~~~~~---~~~~Y~----~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~  173 (467)
                      ++++.+.+++.+.+...   ....|.    ......++++.+++++...      +++|++  |+|+++++.++.  ...
T Consensus        31 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~------~~~v~~--~~g~t~al~~~~--~~l  100 (400)
T 3vax_A           31 RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAE------PDELIF--TSGATESNNIAL--LGL  100 (400)
T ss_dssp             SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCC------GGGEEE--ESCHHHHHHHHH--HTT
T ss_pred             CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCC------CCcEEE--eCCHHHHHHHHH--HHH
Confidence            44788888888876421   101121    1234678888888886432      678999  999999999983  333


Q ss_pred             h----CCCC-EEEEcCCCCcchHHHHh---hCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCC
Q 012238          174 Y----FPGA-KVLISSPTWGNHKNIFN---DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGID  245 (467)
Q Consensus       174 ~----~~gd-~Vlv~~P~y~~~~~~~~---~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~  245 (467)
                      .    .+|| +|+++.++|+.+...+.   ..|++++.++.+  .++.+|++.+++.++   ++++++++++||||||.+
T Consensus       101 ~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~  175 (400)
T 3vax_A          101 APYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPG--PSGRISVEGVMERLR---PDTLLVSLMHVNNETGVI  175 (400)
T ss_dssp             HHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCC--TTCCCCHHHHHTTCC---TTEEEEECCSBCTTTCBB
T ss_pred             HHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccC--CCCCcCHHHHHHhcC---CCceEEEEECCCCCceee
Confidence            3    6899 99999999988766554   469999999984  367799999999887   578999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHH
Q 012238          246 PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDL  325 (467)
Q Consensus       246 ~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~  325 (467)
                      ++.   ++|+++|+++|+++|+|++|.....      ...+    ... ..+++.|+||.+|++|+  |++++ +.++++
T Consensus       176 ~~l---~~i~~la~~~~~~li~D~a~~~~~~------~~~~----~~~-~d~~~~s~~K~~g~~g~--g~~~~-~~~~~~  238 (400)
T 3vax_A          176 QPV---AELAQQLRATPTYLHVDAAQGYGKV------PGDL----TTP-IDMISISGHKIGAPKGV--GALVT-RRREEM  238 (400)
T ss_dssp             CCH---HHHHHHHTTSSCEEEEECTTTTTTS------GGGG----GSC-CSEEEEETGGGTSCSSC--EEEEE-CBCSSS
T ss_pred             CcH---HHHHHHHHhcCCEEEEEhhhhcCCC------CcCh----hhc-CcEEEEeHHHhCCCCce--EEEEE-ecchhc
Confidence            985   5777789999999999999863221      1111    112 45889999998887664  55530 133211


Q ss_pred             H---hhhhhhhHHHHHHHHHhhc-------cCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012238          326 A---ARCCEVAVIQVKSQLKRLA-------RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL  395 (467)
Q Consensus       326 ~---~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l  395 (467)
                      .   ..            +....       ......++...+.++..++..      +.+.+++.+++++++++++.+.|
T Consensus       239 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~~~~~~~~~~~~~~~l~~~L  300 (400)
T 3vax_A          239 DDERVP------------LEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI------FEAEHAQWQVAAQDLRSRLLAGL  300 (400)
T ss_dssp             TTCBCC------------CCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH------HHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccc------------cCceecCCCceeeeecCCCCHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHhh
Confidence            1   11            11110       111223444444444444421      12346788899999999999999


Q ss_pred             hhccCCCCCcccccCCc----ceEEec--CCCHHHHHHHHHcccEEEeCC-------------------------C--eE
Q 012238          396 SAKDKSGKDWSFILRQI----GMFSFT--GLNKAQSDNMTNKWHVYMTKD-------------------------G--RI  442 (467)
Q Consensus       396 ~~~~g~~~~~~~~~~~~----g~f~~~--~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ri  442 (467)
                      + ..+    +.+..+.+    +++.+.  +.+.+.+.+.+. +||.+.+|                         +  ||
T Consensus       301 ~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl  374 (400)
T 3vax_A          301 A-STS----FQVNGDQDHVVPHILNLSFEDVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRF  374 (400)
T ss_dssp             T-TTT----CEECSCTTSBCTTEEEEECTTCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEE
T ss_pred             C-CCC----EEEeCCcccCCCCEEEEEeCCCCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEE
Confidence            7 544    45555543    333221  345555444455 69988774                         4  99


Q ss_pred             Ee-cc-CChhhHHHHHHHHHHHHHh
Q 012238          443 SL-AG-LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       443 s~-~~-~~~~~i~~~~~~l~~~l~~  465 (467)
                      ++ +. .+++++++++++|++++++
T Consensus       375 s~~~~~~t~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          375 SWTPGQATDLDVEELARGVAKLKPS  399 (400)
T ss_dssp             EEEEC--------------------
T ss_pred             EccCCCCCHHHHHHHHHHHHHHhcc
Confidence            99 53 3678999999999998764

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.95  E-value=1.2e-26  Score=234.63  Aligned_cols=327  Identities=14%  Similarity=0.077  Sum_probs=216.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +...|||+.|..-+.-+.  .+|.+.+++.+.++....  ..| +.....++++.+++++    +    .+++++  ++|
T Consensus        56 g~~~lD~~~~~~~~~lG~--~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----g----~~~v~~--~~g  122 (420)
T 2pb2_A           56 GKEYIDFAGGIAVTALGH--CHPALVEALKSQGETLWHTSNVF-TNEPALRLGRKLIDAT----F----AERVLF--MNS  122 (420)
T ss_dssp             CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCCCCCTTS-CCHHHHHHHHHHHHHS----S----CSEEEE--ESS
T ss_pred             CCEEEEccccccccccCC--CCHHHHHHHHHHHHhcccccCcc-CCHHHHHHHHHHHhhC----C----CCeEEE--eCC
Confidence            347899998853222233  368899999888754221  123 3445567777777764    2    468988  999


Q ss_pred             chhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchH-HHHhhCCCC------------eEEeeeecCCCCCCChhhHH
Q 012238          160 GTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHK-NIFNDARVP------------WSEYRYYDPKTVGLDFEGMI  220 (467)
Q Consensus       160 gt~al~l~~~~l~~~~-----~g-d~Vlv~~P~y~~~~-~~~~~~G~~------------~~~v~~~~~~~~~~d~~~l~  220 (467)
                      |++|++++..++....     +| ++|++++|+|..+. ..+...|.+            +..++.       .|++.++
T Consensus       123 gteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le  195 (420)
T 2pb2_A          123 GTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHAVK  195 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHHHH
Confidence            9999999844332210     67 49999999997664 344555543            333332       3899999


Q ss_pred             HHHHcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012238          221 ADIKAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (467)
Q Consensus       221 ~~l~~~~~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (467)
                      +.++   ++++++++++++||+|. +++.+++++|.++|++||+++|+||+|.++...+   ..... .......+++  
T Consensus       196 ~~i~---~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g---~~~~~-~~~~~~~dii--  266 (420)
T 2pb2_A          196 AVMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTG---DLFAY-MHYGVTPDIL--  266 (420)
T ss_dssp             HHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSSHH-HHHTCCCSEE--
T ss_pred             HHhc---cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCC---cHHHH-HhcCCCCCeE--
Confidence            9887   57888888888888884 6999999999999999999999999998876532   11222 1223334544  


Q ss_pred             ecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM  379 (467)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~  379 (467)
                       ||||.++ +|+|+||++   .++++++.            +.........+.+.+++.++..+|+...      +  +.
T Consensus       267 -t~sK~l~-~G~~iG~~~---~~~~l~~~------------l~~~~~~~t~~~~~~~~aa~~a~L~~~~------~--~~  321 (420)
T 2pb2_A          267 -TSAKALG-GGFPVSAML---TTQEIASA------------FHVGSHGSTYGGNPLACAVAGAAFDIIN------T--PE  321 (420)
T ss_dssp             -EECGGGG-TTSCCEEEE---ECHHHHTT------------CC----CCEECCCHHHHHHHHHHHHHHS------S--HH
T ss_pred             -Eeccccc-CCCceEEEE---EhHHHHHh------------hcCCCcCcccCcCHHHHHHHHHHHHHHH------h--cc
Confidence             7899999 899999996   56667666            4332222234567777777766653211      0  24


Q ss_pred             HHHHHHHHHHHHHHHhhhcc--CCCCCcccccCCcceEEecCC------CH-HHHHHHHHcccEEEeCCC----eEEec-
Q 012238          380 MAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL------NK-AQSDNMTNKWHVYMTKDG----RISLA-  445 (467)
Q Consensus       380 ~~~~~~~~r~~l~~~l~~~~--g~~~~~~~~~~~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~gg----Ris~~-  445 (467)
                      ..++++++++++.+.|+ ++  ++|. +....+.|. |+++.+      +. ++.+.+++ +||.+.++|    ||++. 
T Consensus       322 ~~~~~~~~~~~l~~~L~-~~~~~~~~-~~~~~~~g~-~~~v~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~~~iRl~~~~  397 (420)
T 2pb2_A          322 VLQGIHTKRQQFVQHLQ-AIDEQFDI-FSDIRGMGL-LIGAELKPKYKGRARDFLYAGAE-AGVMVLNAGADVMRFAPSL  397 (420)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHHHCC-EEEEEEETT-EEEEEECGGGTTCHHHHHHHHHH-TTEECEESSTTEEEECCCT
T ss_pred             HHHHHHHHHHHHHHHHH-HHHhcCCC-eEEEEecce-EEEEEECCCchHHHHHHHHHHHH-CCCEEEeCCCCEEEEECCC
Confidence            55667777777877777 54  2221 222344444 555432      23 34556665 699999874    88854 


Q ss_pred             cCChhhHHHHHHHHHHHHHhc
Q 012238          446 GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       446 ~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ..+++++++++++|+++++++
T Consensus       398 ~~t~eei~~~~~~l~~~l~~~  418 (420)
T 2pb2_A          398 VVEEADIHEGMQRFAQAVGKV  418 (420)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHH
Confidence            348899999999999998764

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.95  E-value=4.3e-26  Score=233.61  Aligned_cols=339  Identities=12%  Similarity=0.065  Sum_probs=218.6

Q ss_pred             CCcEEecCccc-CCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           83 EKKLNLGVGAY-RTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        83 ~~~i~l~~G~~-~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      .++++|+.|.. .|...... .+.+.+++.+.+..+. ..|.+..+..+||+++++++..        +++++  |+||+
T Consensus        34 ~~~~~~~~g~~ylD~~~~~~-~~~v~~a~~~~~~~~~-~~y~~~~~~~~l~~~la~~~~~--------~~v~~--t~ggt  101 (467)
T 1ax4_A           34 YNPFLLPSSAVYIDLLTDSG-TNAMSDHQWAAMITGD-EAYAGSRNYYDLKDKAKELFNY--------DYIIP--AHQGR  101 (467)
T ss_dssp             SCGGGSCGGGCSEECSCSSS-CCCEEHHHHHHHHTCC-CCSSSCHHHHHHHHHHHHHHCC--------CEEEE--ESSHH
T ss_pred             cCcccCCCCceeeecccCcC-CHHHHHHHHHHHhhcc-cccccCccHHHHHHHHHHHcCC--------CcEEE--cCCcH
Confidence            45677777653 23211111 2556666666554443 5788888999999999999742        47888  99999


Q ss_pred             hHHHHHHHHHHHhC----CCCE---EEEcCCCCcchHHHHhhCCCCeEEeeeec--------CCCCCCChhhHHHHHHcC
Q 012238          162 GSLRLAAALIERYF----PGAK---VLISSPTWGNHKNIFNDARVPWSEYRYYD--------PKTVGLDFEGMIADIKAA  226 (467)
Q Consensus       162 ~al~l~~~~l~~~~----~gd~---Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~--------~~~~~~d~~~l~~~l~~~  226 (467)
                      +|+.++.  .....    +||+   |+++.+.|..+...++..|.+++.++...        +.++.+|++.|++.+++.
T Consensus       102 ~A~~~al--~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~  179 (467)
T 1ax4_A          102 GAENILF--PVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQH  179 (467)
T ss_dssp             HHHHHHH--HHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHH
T ss_pred             HHHHHHH--HHHHHhhccCCCccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhc
Confidence            9999983  33455    8998   99998888888888899999888776431        124568999999999742


Q ss_pred             C-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEeccCCC--C--------CCCCCCCChhHHH-HHHhcC
Q 012238          227 P-GGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQG--F--------ASGSLDNDASSVR-LFATRG  293 (467)
Q Consensus       227 ~-~~~~~i~i~~p~NPT-G~~~~~~~l~~l~~~~~~~~~~li~Deay~~--~--------~~~~~~~~~~~~~-~~~~~~  293 (467)
                      . .+++++++++||||| |.+++.+++++|+++|++||+++|+|+++..  .        .+.+  .+...+. ......
T Consensus       180 ~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  257 (467)
T 1ax4_A          180 GADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKN--ATIKEVIFDMYKYA  257 (467)
T ss_dssp             CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTT--CCHHHHHHHHGGGC
T ss_pred             CCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCC--Cchhhhhhhhcccc
Confidence            1 267899999999999 8999999999999999999999999998432  0        1211  1111110 000122


Q ss_pred             CeEEEEecCccCcccCCCccc-eEEEecCCH-HHHhhhhhhhHHHHHHHHHhhccC-ccCCCchHHHHHHHHHhCChhhH
Q 012238          294 MELLVAQSYSKNLGLYAERIG-AMNVVCSSS-DLAARCCEVAVIQVKSQLKRLARP-MYSNPPVHGARIVANVVGNPALF  370 (467)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG-~~~~v~~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~L~~~~~~  370 (467)
                       + +++.|+||.++++   +| |++  ..++ ++++.        +.......... .+...+.....++...+... . 
T Consensus       258 -d-~~~~s~sK~~g~~---~Gg~~~--~~d~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~-  320 (467)
T 1ax4_A          258 -D-ALTMSAKKDPLLN---IGGLVA--IRDNEEIFTL--------ARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEG-T-  320 (467)
T ss_dssp             -S-EEEEETTSTTCCS---SCEEEE--ESSCHHHHHH--------HHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHT-T-
T ss_pred             -c-eEEEeccccCCCC---cceEEE--eCCHHHHHHH--------HHhhccccccccccCCccchHHHHHHHHHHHh-h-
Confidence             2 4568999999865   44 443  3436 77766        32211111111 12222332222222122210 0 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecC-------CC------HHHHHHHHHcccEEEe
Q 012238          371 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTG-------LN------KAQSDNMTNKWHVYMT  437 (467)
Q Consensus       371 ~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~-------l~------~~~~~~ll~~~gI~v~  437 (467)
                          +  ++..++..++++.+.+.|+ +.+    +.+..+.+|+++|++       +.      .++++++++++||.+.
T Consensus       321 ----~--~~~~~~~~~~~~~l~~~L~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~  389 (467)
T 1ax4_A          321 ----E--EEYLHYRIGQVKYLGDRLR-EAG----IPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAV  389 (467)
T ss_dssp             ----C--HHHHHHHHHHHHHHHHHHH-HTT----CCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECE
T ss_pred             ----h--hhHHHHHHHHHHHHHHHHH-hCC----CCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceee
Confidence                0  0112222356678888888 654    456677888888876       32      2345666467799987


Q ss_pred             C------------C-------C--eEEecc--CChhhHHHHHHHHHHHHHh
Q 012238          438 K------------D-------G--RISLAG--LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       438 ~------------g-------g--Ris~~~--~~~~~i~~~~~~l~~~l~~  465 (467)
                      +            |       +  ||+++.  .+++++++++++|++++++
T Consensus       390 ~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~  440 (467)
T 1ax4_A          390 EIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEK  440 (467)
T ss_dssp             EESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred             ecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence            6            2       3  899872  4789999999999988765

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.95  E-value=4e-26  Score=229.17  Aligned_cols=312  Identities=16%  Similarity=0.078  Sum_probs=217.5

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (467)
                      +.|||+.|.+    .  . ++.+.+++.+.+..   ..|.+..+..++|+++++++...        ++++  +.+|+++
T Consensus        31 ~~id~~~~~~----~--~-~~~v~~a~~~~~~~---~~y~~~~~~~~l~~~la~~~~~~--------~~v~--~~~Gt~a   90 (399)
T 2oga_A           31 PFLDLKAAYE----E--L-RAETDAAIARVLDS---GRYLLGPELEGFEAEFAAYCETD--------HAVG--VNSGMDA   90 (399)
T ss_dssp             CSCCHHHHHH----H--T-HHHHHHHHHHHHHH---TCCSSSHHHHHHHHHHHHHTTSS--------EEEE--ESCHHHH
T ss_pred             cccccCcCCC----C--C-CHHHHHHHHHHHhc---CCCCCchhHHHHHHHHHHHHCCC--------eEEE--ecCHHHH
Confidence            6899999876    2  2 47888888888754   25767788999999999996431        4555  6888999


Q ss_pred             HHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          164 LRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       164 l~l~~~~l~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      +.++  +... +.+||+|+++.|+|..+...++..|++++.++++ ++++.+|++.+++.++   +++++++   ++|||
T Consensus        91 ~~~~--l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~---~~~~~v~---~~n~t  161 (399)
T 2oga_A           91 LQLA--LRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPH-EDHPTLDPLLVEKAIT---PRTRALL---PVHLY  161 (399)
T ss_dssp             HHHH--HHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-SSSSSBCHHHHHHHCC---TTEEEEC---CBCGG
T ss_pred             HHHH--HHHhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecC-CCCCCcCHHHHHHhcC---CCCeEEE---EeCCc
Confidence            9997  3334 5699999999999999999999999999999985 3357899999999987   4666666   57999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecC--ccCcccCCCccceEEEec
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~~v~  320 (467)
                      |...+   +++|.++|+++|+++|+||+|..+...+  ...  .    .. ...+++.|+  ||.++.+| |.||++  +
T Consensus       162 G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~--~~~--~----~~-~~di~~~S~~~sK~~~~~G-~~g~~~--~  226 (399)
T 2oga_A          162 GHPAD---MDALRELADRHGLHIVEDAAQAHGARYR--GRR--I----GA-GSSVAAFSFYPGKNLGCFG-DGGAVV--T  226 (399)
T ss_dssp             GCCCC---HHHHHHHHHHHTCEECEECTTCTTCEET--TEE--T----TC-TTCEEEEECCTTSSSCCSS-CCEEEE--E
T ss_pred             CCccC---HHHHHHHHHHcCCEEEEECcccccCccC--Cee--c----cc-ccCEEEEeCCCCccCCcCC-ceEEEE--e
Confidence            99877   5577778999999999999997653211  111  1    10 124788888  79999889 999985  4


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhccCc------------cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLARPM------------YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  388 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r  388 (467)
                      .++++++.            ++......            ....+.+.+.++...++.          ++...++.++++
T Consensus       227 ~~~~~~~~------------l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~----------~~~~~~~~~~~~  284 (399)
T 2oga_A          227 GDPELAER------------LRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH----------LDSWNGRRSALA  284 (399)
T ss_dssp             SCHHHHHH------------HHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT----------HHHHHHHHHHHH
T ss_pred             CCHHHHHH------------HHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence            56787776            43322211            113445554444444321          233445556667


Q ss_pred             HHHHHHhhhcc-CCCCCcccc-cCCcceEEec-----CCCHHHHHHHHHcccEEEeCC----------------------
Q 012238          389 QKLFDSLSAKD-KSGKDWSFI-LRQIGMFSFT-----GLNKAQSDNMTNKWHVYMTKD----------------------  439 (467)
Q Consensus       389 ~~l~~~l~~~~-g~~~~~~~~-~~~~g~f~~~-----~l~~~~~~~ll~~~gI~v~~g----------------------  439 (467)
                      +++.+.|+ ++ +    +++. .+.++.++|.     ..+.+.+.+.|.++||.+.++                      
T Consensus       285 ~~l~~~L~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p  359 (399)
T 2oga_A          285 AEYLSGLA-GLPG----IGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLP  359 (399)
T ss_dssp             HHHHHHTT-TCTT----CBCCCCCTTEECCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCH
T ss_pred             HHHHHHhc-cCCC----ccccCCCCCCcceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCCh
Confidence            78888887 65 3    3332 2444555542     224444444444569988652                      


Q ss_pred             -------C--eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          440 -------G--RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 -------g--Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                             +  ||++.. .+++++++++++|+++++++
T Consensus       360 ~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l  396 (399)
T 2oga_A          360 RAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV  396 (399)
T ss_dssp             HHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                   2  666642 37899999999999998865

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.95  E-value=5.8e-26  Score=230.09  Aligned_cols=329  Identities=12%  Similarity=0.021  Sum_probs=210.4

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.|||+.|.+...-+.  .+|.+.+++.+.++......| +.....++.+.+++++.       .+++|++  ++||+
T Consensus        51 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-------~~~~v~~--~~ggs  118 (427)
T 3fq8_A           51 GNRYIDYVGTWGPAICGH--AHPEVIEALKVAMEKGTSFGA-PCALENVLAEMVNDAVP-------SIEMVRF--VNSGT  118 (427)
T ss_dssp             SCEEEESSGGGTTCTTCB--TCHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHST-------TCSEEEE--ESSHH
T ss_pred             CCEEEECCCchhhhccCC--CCHHHHHHHHHHHHhCCCcCC-CCHHHHHHHHHHHHhCC-------CCCEEEE--eCCHH
Confidence            357899999976333333  378899999888865433334 44455566666666632       2678999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCC--------------------eEEeeeecCCCCCCChhhHHH
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP--------------------WSEYRYYDPKTVGLDFEGMIA  221 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~--------------------~~~v~~~~~~~~~~d~~~l~~  221 (467)
                      +++.++..+......+++|++..|+|..+...+...+..                    +..++.       .|++.+++
T Consensus       119 ea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~  191 (427)
T 3fq8_A          119 EACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-------NDLEAVKA  191 (427)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET-------TCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCC-------CCHHHHHH
Confidence            999998543333445689999999997654433222111                    122221       18999999


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEe
Q 012238          222 DIKAAPGGSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (467)
Q Consensus       222 ~l~~~~~~~~~i~i~~p~NPTG~~~~-~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  300 (467)
                      .+++.+.++++++++.++|++|.+.+ .+.+++|.++|++||+++|+||+|.+| ..+   ..... .......+   +.
T Consensus       192 ~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g---~~~~~-~~~~~~~d---i~  263 (427)
T 3fq8_A          192 LFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIA---YGGVQ-EKFGVTPD---LT  263 (427)
T ss_dssp             HHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTB---TTHHH-HHTTCCCS---EE
T ss_pred             HHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC---cchhh-HhcCCCCC---hh
Confidence            99865557788888888888887776 555999999999999999999999988 321   11222 11122223   45


Q ss_pred             cCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc---cCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238          301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA---RPMYSNPPVHGARIVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l  377 (467)
                      ||||.++ +|+|+||++   +++++++.            +....   .....+.+.+++.++..+|+...-        
T Consensus       264 t~sK~~~-~G~~~G~~~---~~~~~~~~------------~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~--------  319 (427)
T 3fq8_A          264 TLGKIIG-GGLPVGAYG---GKREIMQL------------VAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ--------  319 (427)
T ss_dssp             EECGGGG-TTSSCEEEE---ECHHHHTT------------BTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS--------
T ss_pred             hhhhhhh-CCcceEEEE---EcHHHHHh------------hccCCCccccCCCCcCHHHHHHHHHHHHHHHh--------
Confidence            8899999 899999995   78888877            54321   122335567777777666531100        


Q ss_pred             HHHHHHHHHHHHHHHHHhhh---ccCCCCCcccccCCcceEEecCC-----C-------------HHHHHHHHHcccEEE
Q 012238          378 EMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSFTGL-----N-------------KAQSDNMTNKWHVYM  436 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f~~~~l-----~-------------~~~~~~ll~~~gI~v  436 (467)
                      +...++++++++.+.+.|++   ..+.    ....+..|+++|+.+     .             .++.+.+++ +||.+
T Consensus       320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gi~v  394 (427)
T 3fq8_A          320 PGTYEYLDQITKRLSDGLLAIAQETGH----AACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYL  394 (427)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHTTC----CCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEEC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhCCC----CeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHH-CCcEE
Confidence            12233344444444444430   3332    122233455555432     1             234556655 59999


Q ss_pred             eCCC--eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          437 TKDG--RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       437 ~~gg--Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .+++  |+++.. .+++++++++++|+++++++
T Consensus       395 ~~~~~~r~~~~~~~t~e~i~~~l~~l~~~l~~~  427 (427)
T 3fq8_A          395 APSQFEAGFTSLAHTEEDIDATLAAARTVMSAL  427 (427)
T ss_dssp             CSSTTSCEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             ecCCCCCEEeeCcCCHHHHHHHHHHHHHHHHhC
Confidence            9987  776543 27899999999999998763

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.95  E-value=1.1e-25  Score=225.01  Aligned_cols=302  Identities=13%  Similarity=0.025  Sum_probs=209.4

Q ss_pred             chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-hCCCCEE
Q 012238          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKV  180 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~~~gd~V  180 (467)
                      +.+.+.+++.+.+..+. ..|.+..+..++|+++++++..       ++.|++  ++| ++|++++  +... +.+||+|
T Consensus        15 ~~~~~~~a~~~~l~~~~-~~~~~~~~~~~l~~~la~~~~~-------~~~i~~--~sG-t~al~~~--l~~l~~~~gd~V   81 (388)
T 1b9h_A           15 YDDAERNGLVRALEQGQ-WWRMGGDEVNSFEREFAAHHGA-------AHALAV--TNG-THALELA--LQVMGVGPGTEV   81 (388)
T ss_dssp             CCHHHHHHHHHHHHTSC-CBTTTCSHHHHHHHHHHHHTTC-------SEEEEE--SCH-HHHHHHH--HHHTTCCTTCEE
T ss_pred             CCHHHHHHHHHHHHcCC-eeecCCHHHHHHHHHHHHHhCC-------CeEEEe--CCH-HHHHHHH--HHHcCCCCcCEE
Confidence            34889999998886543 4677788999999999999743       245666  554 9999997  4434 5699999


Q ss_pred             EEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q 012238          181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE  260 (467)
Q Consensus       181 lv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~  260 (467)
                      +++.|+|..+...++..|++++.++++ ++++.+|++.+++.++   +++++++   |+||||.+.+.   ++|+++|++
T Consensus        82 i~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~i~---~~~~~v~---~~n~tG~~~~l---~~i~~la~~  151 (388)
T 1b9h_A           82 IVPAFTFISSSQAAQRLGAVTVPVDVD-AATYNLDPEAVAAAVT---PRTKVIM---PVHMAGLMADM---DALAKISAD  151 (388)
T ss_dssp             EEESSSCTHHHHHHHHTTCEEEEECBC-TTTCCBCHHHHHHHCC---TTEEEEC---CBCGGGCCCCH---HHHHHHHHH
T ss_pred             EECCCccHHHHHHHHHcCCEEEEEecC-CCcCCCCHHHHHHhcC---cCceEEE---EeCCccCcCCH---HHHHHHHHH
Confidence            999999999999999999999999985 3357899999999986   4666665   89999999765   577777999


Q ss_pred             cCCeeEEeccCCCC-CCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHH--HhhhhhhhHHHH
Q 012238          261 KNHIPFFDVAYQGF-ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDL--AARCCEVAVIQV  337 (467)
Q Consensus       261 ~~~~li~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~--~~~~~~~~~~~~  337 (467)
                      +|+++|+|++|... .+.+  .+   +   ...  .++.+.||||..+++|.|+||++  +.++.+  ++.         
T Consensus       152 ~~~~li~D~a~~~g~~~~~--~~---~---~~~--~~i~~~S~s~~K~l~g~~~G~~~--~~~~~~~~~~~---------  210 (388)
T 1b9h_A          152 TGVPLLQDAAHAHGARWQG--KR---V---GEL--DSIATFSFQNGKLMTAGEGGAVV--FPDGETEKYET---------  210 (388)
T ss_dssp             HTCCBCEECTTCTTCEETT--EE---G---GGS--SSCEEEECCTTSSSCSSSCEEEE--ECTTCHHHHHH---------
T ss_pred             cCCEEEEecchhcCCccCC--ee---c---ccc--cceEEEEccCCCcccCCCeEEEE--ECCHHHHHHHH---------
Confidence            99999999998753 3321  11   1   111  26889999988777788999996  344335  444         


Q ss_pred             HHHHHhhccC--------------ccC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238          338 KSQLKRLARP--------------MYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  402 (467)
Q Consensus       338 ~~~l~~~~~~--------------~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~  402 (467)
                         +......              .+. ..+.+...++...          .+.+++..++++++++++.+.|+ ++.  
T Consensus       211 ---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~----------~~~l~~~~~~~~~~~~~l~~~L~-~~~--  274 (388)
T 1b9h_A          211 ---AFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ----------LARLDEQIAVRDERWTLLSRLLG-AID--  274 (388)
T ss_dssp             ---HHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH----------HTTHHHHHHHHHHHHHHHHHHHH-TST--
T ss_pred             ---HHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhc-cCC--
Confidence               3222110              011 1233322222111          12255677788888999999998 762  


Q ss_pred             CCccccc------CCcceEEecCCC------HH-HHHHHHHcccEEEeCC---------------------------C--
Q 012238          403 KDWSFIL------RQIGMFSFTGLN------KA-QSDNMTNKWHVYMTKD---------------------------G--  440 (467)
Q Consensus       403 ~~~~~~~------~~~g~f~~~~l~------~~-~~~~ll~~~gI~v~~g---------------------------g--  440 (467)
                      + +.+..      +.+++++|+.+.      .+ +.+.|. ++||.+.++                           +  
T Consensus       275 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (388)
T 1b9h_A          275 G-VVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLV-EAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNT  352 (388)
T ss_dssp             T-CEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHH-HTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHH
T ss_pred             C-ccccCCCcCCCccceEEEEEEeCCcCcccHHHHHHHHH-HCCCCcccccCccccChHhHhcCCCcccccccccCCHHH
Confidence            1 44443      345677777542      22 344555 469988643                           0  


Q ss_pred             --------eEEec-cC-ChhhHHHHHHHHHHHHHh
Q 012238          441 --------RISLA-GL-SLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       441 --------Ris~~-~~-~~~~i~~~~~~l~~~l~~  465 (467)
                              ||++. .+ +++++++++++|++++++
T Consensus       353 ~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~  387 (388)
T 1b9h_A          353 DAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR  387 (388)
T ss_dssp             HHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence                    55554 35 679999999999998875

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.95  E-value=6.4e-26  Score=225.42  Aligned_cols=318  Identities=14%  Similarity=0.105  Sum_probs=211.7

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCC--cchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      ..++|+-|..      + +++.+.+++.+.+..    .|.+.  .-..++++.+++++...    .+.+.+++  |+||+
T Consensus        19 ~~~~~~pgp~------~-~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~g~~----~~~~~i~~--~~ggt   81 (376)
T 3f0h_A           19 GMLNFTVGPV------M-SSEEVRAIGAEQVPY----FRTTEFSSTMLENEKFMLEYAKAP----EGSKAVFM--TCSST   81 (376)
T ss_dssp             SCEECSSSSC------C-CCHHHHHHHTSCCCC----CSSHHHHHHHHHHHHHHHHHHTCC----TTCEEEEE--SSCHH
T ss_pred             CceeecCCCC------C-CcHHHHHHhcCCCCC----CCCHHHHHHHHHHHHHHHHHhCCC----CCceEEEE--cCChh
Confidence            5677775532      2 378888877654321    22221  23456667777775432    11234555  88999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchH--HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      ++++++  +...+.+||+|++++|+|..+.  ..+...|++++.++.  +.++.+|++.+++.++   ++++++++++|+
T Consensus        82 ~al~~~--~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~~~---~~~~~v~~~~~~  154 (376)
T 3f0h_A           82 GSMEAV--VMNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKL--EHGKKLTKEKLYEYDN---QNFTGLLVNVDE  154 (376)
T ss_dssp             HHHHHH--HHHHCCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEEC--CTTCCCCHHHHHTTTT---SCCCEEEEESEE
T ss_pred             HHHHHH--HHhccCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeC--CCCCCCCHHHHHHhhc---cCceEEEEeccc
Confidence            999998  4445679999999998776543  356788999999988  3457899999998765   577889999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc-cCCCccceEEE
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNV  318 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~  318 (467)
                      ||||.+++   +++|+++|++||+++|+|++|......   .+   +.   .. ...+++.|+||.++ ++|  +|+++ 
T Consensus       155 nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~---~~---~~---~~-~~d~~~~s~~K~l~~~~G--~g~~~-  218 (376)
T 3f0h_A          155 TSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFLADP---FN---MN---EC-GADVMITGSQKVLACPPG--ISVIV-  218 (376)
T ss_dssp             TTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSC---CC---HH---HH-TCSEEEEETTTTTCCCSS--CEEEE-
T ss_pred             CCcceecC---HHHHHHHHHHcCCEEEEEcCccccCcc---cc---cc---cc-CccEEEecCcccccCCCc--eEEEE-
Confidence            99999999   667888899999999999997755432   11   11   11 23588999999998 666  57764 


Q ss_pred             ecCCHHHHhhhhhhhHHHHHHHHHhhc----------------cCc-cCCCchHHHHHHHHHhCChhhHHHHHH-HHHHH
Q 012238          319 VCSSSDLAARCCEVAVIQVKSQLKRLA----------------RPM-YSNPPVHGARIVANVVGNPALFDEWKA-EMEMM  380 (467)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~l~~~~----------------~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~-~l~~~  380 (467)
                        .++++++.            +....                ... ...++.....++..++..  + .  +. .+++.
T Consensus       219 --~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~--~-~--~~~~~~~~  279 (376)
T 3f0h_A          219 --LAPRGVER------------VEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKE--I-K--KHGGADAE  279 (376)
T ss_dssp             --ECHHHHHH------------HHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH--H-H--HTTHHHHH
T ss_pred             --ECHHHHHH------------hhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHH--H-H--HhcCHHHH
Confidence              67777665            33211                011 123333222333333211  1 0  11 36778


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCcccccCC--cceEEec--CCCHH-HHHHHHHcccEEEeCCC--------eEEecc-
Q 012238          381 AGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ--IGMFSFT--GLNKA-QSDNMTNKWHVYMTKDG--------RISLAG-  446 (467)
Q Consensus       381 ~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~--~g~f~~~--~l~~~-~~~~ll~~~gI~v~~gg--------Ris~~~-  446 (467)
                      +++++++++++.+.|+ +++    +.+..+.  ..++.+.  +.+.+ +.+.+++++||.+.+|.        ||+++. 
T Consensus       280 ~~~~~~~~~~l~~~L~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~  354 (376)
T 3f0h_A          280 VARIASQAADFRAKIK-DLP----FELVSESPANGVTSVHPTTANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGA  354 (376)
T ss_dssp             HHHHHHHHHHHHHHTT-TSS----EEECCSSBBTTEEEEEESSSCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSS
T ss_pred             HHHHHHHHHHHHHHHH-HcC----CccCccccCceEEEEeCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCC
Confidence            8889999999999998 776    3444332  2333332  44544 45666665699998762        999863 


Q ss_pred             CChhhHHHHHHHHHHHHHh
Q 012238          447 LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       447 ~~~~~i~~~~~~l~~~l~~  465 (467)
                      .+++++++++++|++++++
T Consensus       355 ~t~e~i~~~~~~l~~~l~~  373 (376)
T 3f0h_A          355 LTHEDNTTLVNAFKDLQKR  373 (376)
T ss_dssp             CCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            4789999999999999875

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.95  E-value=3.5e-25  Score=224.14  Aligned_cols=310  Identities=15%  Similarity=0.059  Sum_probs=217.3

Q ss_pred             EecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC-CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHH
Q 012238           87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (467)
Q Consensus        87 ~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~-~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~  165 (467)
                      +|+.|.|    .++. ++.+.+++.+.+..+   .|.+ ..+..++|+++++++..        +++++  |+||++++.
T Consensus        20 ~l~~~~p----~~~~-p~~~~~a~~~~~~~~---~y~~~~~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~   81 (424)
T 2po3_A           20 PLLVGRP----NRID-RARLYERLDRALDSQ---WLSNGGPLVREFEERVAGLAGV--------RHAVA--TCNATAGLQ   81 (424)
T ss_dssp             CEETTCC----CCCC-HHHHHHHHHHHHHHT---CCSSSCHHHHHHHHHHHHHHTS--------SEEEE--ESCHHHHHH
T ss_pred             cccccCC----CCCC-hHHHHHHHHHHHhcC---CcccCCHHHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHH
Confidence            6888887    5554 788899988887653   4766 68999999999999743        47888  999999999


Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCC
Q 012238          166 LAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGID  245 (467)
Q Consensus       166 l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~  245 (467)
                      ++.   ..+.+||+|+++.|+|..+...++..|++++.++++ ++++.+|++.+++.++   +++++++++   ||||..
T Consensus        82 ~~l---~~l~~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~---~~~~~v~~~---~~tG~~  151 (424)
T 2po3_A           82 LLA---HAAGLTGEVIMPSMTFAATPHALRWIGLTPVFADID-PDTGNLDPDQVAAAVT---PRTSAVVGV---HLWGRP  151 (424)
T ss_dssp             HHH---HHHTCCSEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTSSBCHHHHGGGCC---TTEEEEEEE---CGGGCC
T ss_pred             HHH---HHcCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC-CCcCCcCHHHHHHhhC---cCCcEEEEE---CCCCCc
Confidence            983   334589999999999999999999999999999985 3467899999998886   467777764   599987


Q ss_pred             CCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHH
Q 012238          246 PTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (467)
Q Consensus       246 ~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~  324 (467)
                      .   ++++|+++|+++|++||+||+|. ++.++.   .  ++   ... .+ +++.||||..+++|+|+||++  +.+++
T Consensus       152 ~---~l~~i~~la~~~~~~li~Dea~~~g~~~~~---~--~~---~~~-~d-i~~~S~sk~K~l~~~~~G~~v--~~~~~  216 (424)
T 2po3_A          152 C---AADQLRKVADEHGLRLYFDAAHALGCAVDG---R--PA---GSL-GD-AEVFSFHATKAVNAFEGGAVV--TDDAD  216 (424)
T ss_dssp             C---CHHHHHHHHHHTTCEEEEECTTCTTCEETT---E--ET---TSS-SS-EEEEECCTTSSSCCSSCEEEE--ESCHH
T ss_pred             C---CHHHHHHHHHHcCCEEEEECccccCCeECC---e--ec---ccc-cC-EEEEeCCCCCCccCCCCeEEE--eCCHH
Confidence            5   45677888999999999999998 565432   1  11   111 22 889999977777779999996  44477


Q ss_pred             HHhhhhhhhHHHHHHHHHhhccCccC------------CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          325 LAARCCEVAVIQVKSQLKRLARPMYS------------NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  392 (467)
Q Consensus       325 ~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~  392 (467)
                      +++.            +.........            ..+.+.   +...+.  .     .+.+++..++.+++++++.
T Consensus       217 l~~~------------l~~~~~~~~~~~~~~~~~g~~~~~~~~~---aa~~l~--~-----~~~~~~~~~~~~~~~~~l~  274 (424)
T 2po3_A          217 LAAR------------IRALHNFGFDLPGGSPAGGTNAKMSEAA---AAMGLT--S-----LDAFPEVIDRNRRNHAAYR  274 (424)
T ss_dssp             HHHH------------HHHHHBTTTTCTTCCTTCCCBCCCCHHH---HHHHHH--H-----HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH------------HHHHHhcCccccccccccCcCCCcCHHH---HHHHHH--H-----HHHHHHHHHHHHHHHHHHH
Confidence            7776            4333221110            112222   211221  1     1235566777777888888


Q ss_pred             HHhhhccCCCCCccccc-CCcc---eEEe-c-------CCCHHHHHHHHHcccEEEeCC--------------------C
Q 012238          393 DSLSAKDKSGKDWSFIL-RQIG---MFSF-T-------GLNKAQSDNMTNKWHVYMTKD--------------------G  440 (467)
Q Consensus       393 ~~l~~~~g~~~~~~~~~-~~~g---~f~~-~-------~l~~~~~~~ll~~~gI~v~~g--------------------g  440 (467)
                      +.|+ ++.  + +.+.. +.++   +++| +       +.+.+.+.+.+.++||.+.+.                    +
T Consensus       275 ~~L~-~~~--g-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~  350 (424)
T 2po3_A          275 EHLA-DLP--G-VLVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPH  350 (424)
T ss_dssp             HHTC-SCT--T-EEECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHH
T ss_pred             HHhc-cCC--C-ccccCCCCCCccccEEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChh
Confidence            8887 652  1 45544 3333   2333 3       235555555566679998752                    0


Q ss_pred             --e-----EEec---cCChhhHHHHHHHHHHHHHh
Q 012238          441 --R-----ISLA---GLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       441 --R-----is~~---~~~~~~i~~~~~~l~~~l~~  465 (467)
                        |     |+++   ..+++++++++++|++++++
T Consensus       351 ~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~  385 (424)
T 2po3_A          351 TERLAARVLSLPTGTAIGDDDIRRVADLLRLCATR  385 (424)
T ss_dssp             HHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence              3     7764   34789999999999998764

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.95  E-value=4.1e-26  Score=228.68  Aligned_cols=329  Identities=12%  Similarity=0.027  Sum_probs=210.2

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcC--CCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y--~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.+||+.|.+.+.-+.  .+|.+.+++.+.+.... +.|  .+.....++++.+++++.        .+++++  ++|
T Consensus        35 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~--------~~~v~~--~~g  101 (395)
T 3nx3_A           35 AKKYLDFSSGIGVCALGY--NHAKFNAKIKAQVDKLL-HTSNLYYNENIAAAAKNLAKASA--------LERVFF--TNS  101 (395)
T ss_dssp             CCEEEESSHHHHTCTTCB--SCHHHHHHHHHHHTTCS-CCCTTSBCHHHHHHHHHHHHHHT--------CSEEEE--ESS
T ss_pred             CCEEEECCCcHHhccCCC--CCHHHHHHHHHHHHhcc-ccccccCCHHHHHHHHHHHHhcC--------CCeEEE--eCC
Confidence            357899999865332232  37889999988875432 222  234445667777777642        468988  999


Q ss_pred             chhHHHHHHHHHHHh-----CCCCEEEEcCCCCcchHHHHhhCC-------------CCeEEeeeecCCCCCCChhhHHH
Q 012238          160 GTGSLRLAAALIERY-----FPGAKVLISSPTWGNHKNIFNDAR-------------VPWSEYRYYDPKTVGLDFEGMIA  221 (467)
Q Consensus       160 gt~al~l~~~~l~~~-----~~gd~Vlv~~P~y~~~~~~~~~~G-------------~~~~~v~~~~~~~~~~d~~~l~~  221 (467)
                      |++|+.++..++...     .++|+|++++|+|..+.......+             .++..++.       .|++.+++
T Consensus       102 g~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~  174 (395)
T 3nx3_A          102 GTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISSVEK  174 (395)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHHHHH
Confidence            999999985443333     467999999999987654433332             23333332       37889988


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEe
Q 012238          222 DIKAAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (467)
Q Consensus       222 ~l~~~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  300 (467)
                      .++   ++++++++.+++|++|.. ++.+++++|.++|++||+++|+||+|.+|...+.   .... .......+   +.
T Consensus       175 ~l~---~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~---~~~~-~~~~~~~d---~~  244 (395)
T 3nx3_A          175 LVN---EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK---FFAY-EHAQILPD---IM  244 (395)
T ss_dssp             TCC---TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG-GGGTCCCS---EE
T ss_pred             hcc---CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc---chhH-HhcCCCCC---EE
Confidence            886   566777777777888776 6788899999999999999999999998854321   1111 11111222   44


Q ss_pred             cCccCcccCCCccceEEEecCCHHH-HhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238          301 SYSKNLGLYAERIGAMNVVCSSSDL-AARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM  379 (467)
Q Consensus       301 S~SK~~~~~G~RiG~~~~v~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~  379 (467)
                      +|||.++ .|+|+||++   .++++ ++.            +.........+.+.+++.++..+|+...-    ++.++.
T Consensus       245 t~sK~~~-~G~~~G~~~---~~~~~~~~~------------~~~~~~~~~~~~~~~~~~aa~aal~~~~~----~~~~~~  304 (395)
T 3nx3_A          245 TSAKALG-CGLSVGAFV---INQKVASNS------------LEAGDHGSTYGGNPLVCAGVNAVFEIFKE----EKILEN  304 (395)
T ss_dssp             EECGGGT-TTSCCEEEE---ECHHHHHHH------------SCTTCCSSCBSCCHHHHHHHHHHHHHHHH----TTHHHH
T ss_pred             Eeccccc-CCCceEEEE---Echhhhhhh------------cCCcccCCCCCCCHHHHHHHHHHHHHHHh----hHHHHH
Confidence            7899999 599999995   67776 665            54433333446677777777766642110    111223


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC----CH-HHHHHHHHcccEEEeCCC----eEEecc-CCh
Q 012238          380 MAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKDG----RISLAG-LSL  449 (467)
Q Consensus       380 ~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~gg----Ris~~~-~~~  449 (467)
                      .++..+..++.+.+.+. .++.   +....+.+ .|+|+.+    +. ++.+.+++ +||.+.++|    ||+++. .++
T Consensus       305 ~~~~~~~~~~~l~~~~~-~~~~---~~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~~iRi~~~~~~t~  378 (395)
T 3nx3_A          305 VNKLTPYLEQSLDELIN-EFDF---CKKRKGLG-FMQGLSLDKSVKVAKVIQKCQE-NALLLISCGENDLRFLPPLILQK  378 (395)
T ss_dssp             HHHHHHHHHHHHHHHHH-HCTT---EEEEEEET-TEEEEEECTTSCHHHHHHHHHH-TTEECEEETTTEEEECCCTTCCH
T ss_pred             HHHHHHHHHHHHHHHHH-hCCC---eEEEEeEE-EEEEEEeCCcchHHHHHHHHHH-CCCEEecCCCCEEEEECCCCCCH
Confidence            33333333444444443 3331   23334444 4555432    33 34555555 699999875    887443 388


Q ss_pred             hhHHHHHHHHHHHHHhc
Q 012238          450 AKCEYLADAIIDSYHNV  466 (467)
Q Consensus       450 ~~i~~~~~~l~~~l~~~  466 (467)
                      +++++++++|+++++++
T Consensus       379 e~i~~~l~~l~~~l~~~  395 (395)
T 3nx3_A          379 EHIDEMSEKLRKALKSF  395 (395)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            99999999999998753

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.95  E-value=3.2e-26  Score=228.17  Aligned_cols=334  Identities=12%  Similarity=0.035  Sum_probs=218.2

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCC--cchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      ++.+.|+.|.       +.+++.+.+++.+...    ..|.|.  ....++|+.+++++....  .+++++|++  |+||
T Consensus         4 ~~~~~~~p~p-------~~~~~~v~~a~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~v~~--~~g~   68 (385)
T 2bkw_A            4 SVDTLLIPGP-------IILSGAVQKALDVPSL----GHTSPEFVSIFQRVLKNTRAVFKSAA--ASKSQPFVL--AGSG   68 (385)
T ss_dssp             CCCEECSSSS-------CCCCHHHHHTTSCCCC----CTTSHHHHHHHHHHHHHHHHHTTCCG--GGTCEEEEE--ESCT
T ss_pred             ccceeecCCC-------cCchHHHHHHHhcccc----ccCCHHHHHHHHHHHHHHHHHhCCCC--CCCCceEEE--cCch
Confidence            3456777552       2236778777655332    123232  256789999999976542  234678988  9999


Q ss_pred             hhHHHHHHHHHHHh---CCCCEEEEc-CCCCcch-HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238          161 TGSLRLAAALIERY---FPGAKVLIS-SPTWGNH-KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (467)
Q Consensus       161 t~al~l~~~~l~~~---~~gd~Vlv~-~P~y~~~-~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i  235 (467)
                      ++++.++  +....   .+||+|+++ .|+|..+ ...++..|++++.++.. +.++.+|++.+++.+++  .+++++++
T Consensus        69 t~al~~~--~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~--~~~~~v~~  143 (385)
T 2bkw_A           69 TLGWDIF--ASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL-KIGESVPLELITEKLSQ--NSYGAVTV  143 (385)
T ss_dssp             THHHHHH--HHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS-STTSCCCHHHHHHHHHH--SCCSEEEE
T ss_pred             HHHHHHH--HHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecC-CCCCCCCHHHHHHHHhc--CCCCEEEE
Confidence            9999998  34444   789999888 5667665 36778899999999872 23567999999999974  25678888


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhc--CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc-ccCCCc
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAER  312 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~--~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R  312 (467)
                      ++|+||||.+++.   ++|+++|+++  |+++|+|++|......   .+   +    .....++++.|+||.+ +++|+ 
T Consensus       144 ~~~~nptG~~~~l---~~i~~~~~~~~~~~~li~D~a~~~~~~~---~~---~----~~~~~d~~~~s~~K~~~~~~G~-  209 (385)
T 2bkw_A          144 THVDTSTAVLSDL---KAISQAIKQTSPETFFVVDAVCSIGCEE---FE---F----DEWGVDFALTASQKAIGAPAGL-  209 (385)
T ss_dssp             ESEETTTTEECCH---HHHHHHHHHHCTTSEEEEECTTTTTTSC---CC---T----TTTTCSEEEEESSSTTCCCSCE-
T ss_pred             EccCCCcCeEcCH---HHHHHHHHhhCCCCEEEEECccccCCcc---cc---c----cccCceEEEecCccccccCCcc-
Confidence            9999999999985   4778889999  9999999998632211   11   1    1113457899999955 46775 


Q ss_pred             cceEEEecCCHHHHh-hhhh---------hh-HHHHHHHHHhhcc--Cc-cCCCchHHHHHHHHHhCChhhHHHHHH-HH
Q 012238          313 IGAMNVVCSSSDLAA-RCCE---------VA-VIQVKSQLKRLAR--PM-YSNPPVHGARIVANVVGNPALFDEWKA-EM  377 (467)
Q Consensus       313 iG~~~~v~~~~~~~~-~~~~---------~~-~~~~~~~l~~~~~--~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~-~l  377 (467)
                       ||++   .+++.++ .-..         .. ...+.........  .. ...++...+.++..+|+.  +    .+ .+
T Consensus       210 -G~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~--~----~~~~~  279 (385)
T 2bkw_A          210 -SISL---CSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE--I----LEEGL  279 (385)
T ss_dssp             -EEEE---ECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH--H----HHHCH
T ss_pred             -eEEE---EcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHH--H----HHccH
Confidence             9986   5666655 3000         00 0001111111111  11 124555555454444421  1    12 25


Q ss_pred             HHHHHHHHHHHHHHHHHh-hhccCCCCCcccccC-----CcceEEecCCC-H-HHHHHHHHcccEEEeCC-------C--
Q 012238          378 EMMAGRIKNVRQKLFDSL-SAKDKSGKDWSFILR-----QIGMFSFTGLN-K-AQSDNMTNKWHVYMTKD-------G--  440 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l-~~~~g~~~~~~~~~~-----~~g~f~~~~l~-~-~~~~~ll~~~gI~v~~g-------g--  440 (467)
                      ++.+++++++++++.+.| + ++|    +++..+     ..+.++|+.+. . ++.++|. ++||.+.+|       +  
T Consensus       280 ~~~~~~~~~~~~~l~~~L~~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~i  353 (385)
T 2bkw_A          280 HKRWDLHREMSDWFKDSLVN-GLQ----LTSVSRYPSNMSAHGLTAVYVADPPDVIAFLK-SHGVVIAGGIHKDIGPKYI  353 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-TTC----CEESSCSSSTTBCSSCEEEECSCHHHHHHHHH-HTTEECBCCCCTTTGGGEE
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hcC----ceecccCcccccCCceEEEecCCHHHHHHHHH-HCCeEEeCCCCcccCCCEE
Confidence            678888999999999999 8 765    455432     23556666542 3 4455554 579999886       1  


Q ss_pred             eEE-ec----cCChhhHHHHHHHHHHHHHhc
Q 012238          441 RIS-LA----GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 Ris-~~----~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ||+ ++    ..+++++++++++|+++++++
T Consensus       354 Ris~~~~~~~~~~~e~i~~~~~~l~~~~~~~  384 (385)
T 2bkw_A          354 RIGHMGVTACNKNLPYMKNCFDLIKLALQRK  384 (385)
T ss_dssp             EECCCGGGTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred             EEEccccccccCCHHHHHHHHHHHHHHHHhc
Confidence            999 76    247899999999999998765

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.94  E-value=1.3e-25  Score=227.94  Aligned_cols=328  Identities=14%  Similarity=0.023  Sum_probs=213.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +...|||+.|.+.+.-++  .+|.+.+++.+.+..+....| +.....++++.+++++.       ..++|++  ++||+
T Consensus        55 g~~~lD~~~~~~~~~lG~--~~~~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~-------~~~~v~~--~~sgs  122 (434)
T 2epj_A           55 GARIVDLVLAYGPLILGH--KHPRVLEAVEEALARGWLYGA-PGEAEVLLAEKILGYVK-------RGGMIRF--VNSGT  122 (434)
T ss_dssp             CCEEEESSGGGTTCTTCB--TCHHHHHHHHHHHHTCSCCSS-CCHHHHHHHHHHHHHHC-------TTCEEEE--ESSHH
T ss_pred             CCEEEEcccchhcccCCC--CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHhCC-------CCCEEEE--eCCHH
Confidence            346899998875222233  378899999888865433344 44456778888888752       1578988  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh--------------hCCC------CeEEeeeecCCCCCCChhhHHH
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN--------------DARV------PWSEYRYYDPKTVGLDFEGMIA  221 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~--------------~~G~------~~~~v~~~~~~~~~~d~~~l~~  221 (467)
                      +|+.++.++...+.++++|++.+|+|..+...+.              ..|+      .+..++.       .|++.+++
T Consensus       123 eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~  195 (434)
T 2epj_A          123 EATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALER  195 (434)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHH
Confidence            9999984432225567899999999987544221              1233      2344433       48999999


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEe
Q 012238          222 DIKAAPGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (467)
Q Consensus       222 ~l~~~~~~~~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  300 (467)
                      .+++.++++++++++..+||||.++ +.+.+++|.++|++||+++|+||+|.++..+    ..... .......++   .
T Consensus       196 ~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g----~~~~~-~~~~~~~di---~  267 (434)
T 2epj_A          196 VFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLG----LEGAQ-GYFNIEGDI---I  267 (434)
T ss_dssp             HHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSS----TTHHH-HHHTCCCSE---E
T ss_pred             HHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCC----cchhh-HHhCCCCCe---e
Confidence            9874223556666665567899866 7999999999999999999999999987433    11122 122222333   4


Q ss_pred             cCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc---cCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238          301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA---RPMYSNPPVHGARIVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l  377 (467)
                      ||||.++. |+|+||++   .++++++.            +....   ...+.+.+.+++.++..+|+..      ++  
T Consensus       268 s~sK~l~~-G~~~G~v~---~~~~~~~~------------l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~------~~--  323 (434)
T 2epj_A          268 VLGKIIGG-GFPVGAVA---GSREVMSL------------LTPQGKVFNAGTFNAHPITMAAGLATLKAL------EE--  323 (434)
T ss_dssp             EEEGGGGT-TSSCEEEE---ECHHHHTT------------BTTTSSBCCCCTTTTCHHHHHHHHHHHHHH------HH--
T ss_pred             eecchhcC-Ccceeeee---ecHHHHHh------------hccCCCcccCCCCCcCHHHHHHHHHHHHHH------Hh--
Confidence            89999995 99999996   67777776            44311   1123356667776666655321      11  


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcc----CCCCCcccccCCcceEEecCCC------------------HHHHHHHHHcccEE
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKD----KSGKDWSFILRQIGMFSFTGLN------------------KAQSDNMTNKWHVY  435 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~----g~~~~~~~~~~~~g~f~~~~l~------------------~~~~~~ll~~~gI~  435 (467)
                      ++..++++++++++.+.|+ ++    ++   .....+.| .|+|+.+.                  .++.+.+++ +||.
T Consensus       324 ~~~~~~~~~~~~~l~~~L~-~~~~~~~~---~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~  397 (434)
T 2epj_A          324 EPVYSVSREAAKALEEAAS-EVLDRTGL---PYTINRVE-SMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLR-RGVF  397 (434)
T ss_dssp             SCHHHHHHHHHHHHHHHHH-HHHHHHTC---CEEEEEET-TEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHH-TTEE
T ss_pred             cCHHHHHHHHHHHHHHHHH-HHHhhCCC---cEEEEEee-eEEEEEEeCCCcccchhccccCHHHHHHHHHHHHH-CCeE
Confidence            2345666667777777776 43    42   11233444 45554321                  234555554 6999


Q ss_pred             EeCCC--eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          436 MTKDG--RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       436 v~~gg--Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +.+++  |+.+. ..+++++++++++|+++++++
T Consensus       398 v~~~~~~~~~~~~~~t~e~i~~~l~~l~~~l~~~  431 (434)
T 2epj_A          398 IAPSNLEAVFTGLPHQGEALEIAVEGLRSSLKTV  431 (434)
T ss_dssp             CCSSTTSCEECCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred             EeccCCCcEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence            99986  54432 238899999999999998754

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.94  E-value=3.6e-26  Score=231.99  Aligned_cols=338  Identities=11%  Similarity=0.003  Sum_probs=211.3

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      ...+||+.|.+...-+.  .+|.+.+++.+.+....  ...| +.....++++.+++++..      ++++|++  |+||
T Consensus        43 ~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~------~~~~v~~--~~gg  111 (433)
T 1zod_A           43 RAILDFTSGQMSAVLGH--CHPEIVSVIGEYAGKLDHLFSEM-LSRPVVDLATRLANITPP------GLDRALL--LSTG  111 (433)
T ss_dssp             CEEEETTHHHHTCTTCB--TCHHHHHHHHHHHHHCCCCCTTC-CCHHHHHHHHHHHHHSCT------TCCEEEE--ESCH
T ss_pred             CEEEEcccchhccccCC--CCHHHHHHHHHHHHhCccccccc-CCHHHHHHHHHHHHhCCC------CcCEEEE--eCch
Confidence            46789988765222222  36788898888775431  1234 334456777777777421      2678999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhC-C-----------CCeEEeeeecC--CCC--------CCChhh
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-R-----------VPWSEYRYYDP--KTV--------GLDFEG  218 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~-G-----------~~~~~v~~~~~--~~~--------~~d~~~  218 (467)
                      ++|+.++.++......+|+|++.+|+|..+....... +           ..+..++....  ..+        .+|++.
T Consensus       112 ~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~  191 (433)
T 1zod_A          112 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDY  191 (433)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHH
Confidence            9999998443222234589999999997654432211 1           13334433111  011        236899


Q ss_pred             HHHHHHcCC-CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012238          219 MIADIKAAP-GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (467)
Q Consensus       219 l~~~l~~~~-~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~  296 (467)
                      +++.+++.. .++++++++..+||||. .++.+++++|+++|++||+++|+||+|.+|...+.   .... .......+ 
T Consensus       192 le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~---~~~~-~~~~~~~d-  266 (433)
T 1zod_A          192 AFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT---MFAC-QRDGVTPD-  266 (433)
T ss_dssp             HHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTH-HHHTCCCS-
T ss_pred             HHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCch---HhHH-hhcCCCCC-
Confidence            999887421 34556555444688996 67889999999999999999999999998864321   1112 11222233 


Q ss_pred             EEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh--ccCccCCCchHHHHHHHHHhCChhhHHHHH
Q 012238          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL--ARPMYSNPPVHGARIVANVVGNPALFDEWK  374 (467)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~  374 (467)
                        +.||||.++. |+|+||++   .++++++.            +...  ......+.+.+++.++..+|+..      +
T Consensus       267 --i~s~sK~~~~-G~~ig~~~---~~~~~~~~------------~~~~~~~~~~t~~~~~~~~~a~~aal~~~------~  322 (433)
T 1zod_A          267 --ILTLSKTLGA-GLPLAAIV---TSAAIEER------------AHELGYLFYTTHVSDPLPAAVGLRVLDVV------Q  322 (433)
T ss_dssp             --EEEECHHHHT-TSSCEEEE---ECHHHHHH------------HHHTTCCCCCTTTTCHHHHHHHHHHHHHH------H
T ss_pred             --EEEecccccC-CCCeeEEE---EhHHHHHh------------hccCCCCCCCCCCcCHHHHHHHHHHHHHH------H
Confidence              3489999995 99999996   67777776            4432  11134456777777776665321      1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCcccccCCcceEEecCC-------------CHHHHHHHHHcccEEEeCC
Q 012238          375 AEMEMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL-------------NKAQSDNMTNKWHVYMTKD  439 (467)
Q Consensus       375 ~~l~~~~~~~~~~r~~l~~~l~~~~--g~~~~~~~~~~~~g~f~~~~l-------------~~~~~~~ll~~~gI~v~~g  439 (467)
                      +  +...++++++++++.+.|+ ++  ..+. +....+.|. |+|+.+             ..++.+.+++ +||.+.++
T Consensus       323 ~--~~~~~~~~~~~~~l~~~l~-~l~~~~~~-~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~  396 (433)
T 1zod_A          323 R--DGLVARANVMGDRLRRGLL-DLMERFDC-IGDVRGRGL-LLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIV  396 (433)
T ss_dssp             H--TTHHHHHHHHHHHHHHHHH-HHHHHCTT-EEEEEEETT-EEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEE
T ss_pred             h--CCHHHHHHHHHHHHHHHHH-HHHHhCCC-eEEEEEEEE-EEEEEEecCccccCCChHHHHHHHHHHHH-CCCeEecc
Confidence            1  1344556666777777766 43  1111 233444444 555532             1234556664 69999875


Q ss_pred             ------C--eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          440 ------G--RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 ------g--Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                            +  ||+++ ..+++++++++++|+++++++
T Consensus       397 ~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~  432 (433)
T 1zod_A          397 QLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA  432 (433)
T ss_dssp             CCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence                  3  78654 338899999999999998765

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.94  E-value=6e-26  Score=231.70  Aligned_cols=340  Identities=13%  Similarity=0.016  Sum_probs=205.8

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCc--CCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE--YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~--Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.|||+.|.+...-|.  .+|.|.+++.+.+.......  +.+.....++++.+++++...     ..++|++  |+|
T Consensus        63 G~~ylD~~~~~~~~~lGh--~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-----~~~~v~~--~~s  133 (453)
T 4ffc_A           63 GNSFIDLGAGIAVTTVGA--SHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGD-----HDKRTAL--FNS  133 (453)
T ss_dssp             SCEEEESSHHHHTCTTCT--TCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCS-----SCEEEEE--ESS
T ss_pred             CCEEEEcCCCcccCcCCC--CCHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHhCCCC-----CCcEEEE--eCc
Confidence            357899998865333333  26888888888775532111  123334455555555553211     1468988  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCC--------------CeEEeeeecC--CCCCCC--------
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV--------------PWSEYRYYDP--KTVGLD--------  215 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~--------------~~~~v~~~~~--~~~~~d--------  215 (467)
                      |++|++++.++......+++|++.+|+|..+.......+.              .+..++....  +.++.+        
T Consensus       134 GseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  213 (453)
T 4ffc_A          134 GAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRA  213 (453)
T ss_dssp             HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHH
Confidence            9999999844332223568999999999876554433222              3444544211  112333        


Q ss_pred             hhhHHHHHHcCCCCcEEEEeCCCCCCCC--CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012238          216 FEGMIADIKAAPGGSFILLHGCAHNPTG--IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (467)
Q Consensus       216 ~~~l~~~l~~~~~~~~~i~i~~p~NPTG--~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (467)
                      .+.+++.+.   .+...++++.|.||+|  ..++.+.+++|.++|++||+++|+||+|.+|...+.   .+.. ......
T Consensus       214 ~~~l~~~i~---~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~---~~a~-~~~~~~  286 (453)
T 4ffc_A          214 ISRIETQIG---AQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA---WFAS-EHEGIV  286 (453)
T ss_dssp             HHHHHHHTC---GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTH-HHHTCC
T ss_pred             HHHHHHhcC---CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc---cchh-hhcCCC
Confidence            233444332   3455666678888887  445788899999999999999999999998864321   1111 111222


Q ss_pred             CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHH
Q 012238          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEW  373 (467)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~  373 (467)
                      .+   +.+|||.++. |+|+||++   +++++++.            +.......+.+.+.+++.++..+|+...  +  
T Consensus       287 pd---i~t~sK~~~~-G~~~G~~~---~~~~i~~~------------~~~~~~~~t~~~~~~~~aaa~aal~~~~--~--  343 (453)
T 4ffc_A          287 PD---IVTMAKGIAG-GMPLSAVT---GRAELMDA------------VYAGGLGGTYGGNPVTCAAAVAALGVMR--E--  343 (453)
T ss_dssp             CS---EEEECGGGGT-TSSCEEEE---EEHHHHTT------------SCTTSSCCSSSSCHHHHHHHHHHHHHHH--H--
T ss_pred             cc---hHhhhhhhcC-CcCeEEEE---ECHHHHhh------------hcccCcCCCCCcCHHHHHHHHHHHHHhh--h--
Confidence            23   3478999995 99999995   67888776            5544444455677888888777764211  0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC------------CHHHHHHHHHcccEEEeCCC-
Q 012238          374 KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL------------NKAQSDNMTNKWHVYMTKDG-  440 (467)
Q Consensus       374 ~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l------------~~~~~~~ll~~~gI~v~~gg-  440 (467)
                      ++.++..++..+..++.+.+.+. .++.   +....+.| .|+|+.+            ..++.+.+++ +||.+.++| 
T Consensus       344 ~~~~~~~~~~~~~l~~~l~~~~~-~~~~---~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~  417 (453)
T 4ffc_A          344 LDLPARARAIEASVTSRLSALAE-EVDI---IGEVRGRG-AMLAIEIVKPGTLEPDAALTKSIAAEALS-QGVLILTCGT  417 (453)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHH-HCSS---EEEEEEET-TEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECCEECT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHh-hCCC---eEEEEeec-eEEEEEEecCcccCCCHHHHHHHHHHHHh-CCCEEecCCC
Confidence            11122233333333344444333 3331   23334444 4555432            1233455555 699998864 


Q ss_pred             -----eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          441 -----RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 -----Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                           ||+++. .+++++++++++|+++++++
T Consensus       418 ~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  449 (453)
T 4ffc_A          418 FGNVIRLLPPLVIGDDLLDEGITALSDIIRAK  449 (453)
T ss_dssp             TSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                 776542 38899999999999998764

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.94  E-value=1.8e-25  Score=228.65  Aligned_cols=349  Identities=12%  Similarity=0.030  Sum_probs=214.9

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.|||+.|.+...-+.  .+|.+.+++.+.+.... ..|....+..++++++++++....+  .+.++|++  |+||+
T Consensus        50 G~~~lD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~gGs  122 (460)
T 3gju_A           50 GRKSIDAFAGLYCVNVGY--GRQKIADAIATQAKNLA-YYHAYVGHGTEASITLAKMIIDRAP--KGMSRVYF--GLSGS  122 (460)
T ss_dssp             CCEEEETTHHHHTCTTCB--CCHHHHHHHHHHHHHHS-CCCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEEE--ESSHH
T ss_pred             CCEEEECCcchhhccCCC--CCHHHHHHHHHHHHhcc-ccccccccCCHHHHHHHHHHHhhCC--CCcCEEEE--eCchH
Confidence            457899998855333333  26888888888775421 2233233333444444444433211  23578999  99999


Q ss_pred             hHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHHhhCCC-------------CeEEeeeec---CCCCCCC----
Q 012238          162 GSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYD---PKTVGLD----  215 (467)
Q Consensus       162 ~al~l~~~~l~~~------~~gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~~---~~~~~~d----  215 (467)
                      +|++.+.+++...      .++++|++..|+|..+.......+.             .+..++...   ..+++.+    
T Consensus       123 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~  202 (460)
T 3gju_A          123 DANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQF  202 (460)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHH
Confidence            9999985443322      3568999999999876554433221             334444310   0122334    


Q ss_pred             ----hhhHHHHHHcC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012238          216 ----FEGMIADIKAA-PGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (467)
Q Consensus       216 ----~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~  289 (467)
                          ++.|++.+++. +++++++++..++|++|. +++.+.+++|.++|++||+++|+||+|.+|...+   ..... ..
T Consensus       203 ~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g---~~~~~-~~  278 (460)
T 3gju_A          203 SQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLG---TMFGS-DH  278 (460)
T ss_dssp             HHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSCHH-HH
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---ccchH-hh
Confidence                57888888642 245667777777777787 7788889999999999999999999999886432   11222 22


Q ss_pred             HhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHH---HHhhccCccCCCchHHHHHHHHHhC
Q 012238          290 ATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQ---LKRLARPMYSNPPVHGARIVANVVG  365 (467)
Q Consensus       290 ~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~L~  365 (467)
                      ....+++   .+|||.++ .| +|+||++   +++++++.        +...   ..........+.+.+++.++..+|+
T Consensus       279 ~~~~pdi---~t~sK~l~-gG~~~lg~v~---~~~~i~~~--------~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~  343 (460)
T 3gju_A          279 YGIKPDL---ITIAKGLT-SAYAPLSGVI---VADRVWQV--------LVQGSDKLGSLGHGWTYSAHPICVAAGVANLE  343 (460)
T ss_dssp             HTCCCSE---EEECGGGT-TTSSCCEEEE---EEHHHHHH--------HHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHH
T ss_pred             cCCCCCe---eeeehhhc-CCCCCeEEEE---ECHHHHHH--------HhcccccccccccCCCCCCCHHHHHHHHHHHH
Confidence            2223343   36899997 56 8999995   77888777        2211   0112223344667778887777765


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC----------------CHHHHHHHH
Q 012238          366 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----------------NKAQSDNMT  429 (467)
Q Consensus       366 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l----------------~~~~~~~ll  429 (467)
                      ...  +  ++.++..++..+..++.+.+.+. +++.   +....+.|. |+++.+                ..++.+.++
T Consensus       344 ~~~--~--~~~~~~~~~~~~~~~~~l~~~l~-~~~~---~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  414 (460)
T 3gju_A          344 LID--E--MDLVTNAGETGAYFRAELAKAVG-GHKN---VGEVRGDGM-LAAVEFVADKDDRVFFDASQKIGPQVATALA  414 (460)
T ss_dssp             HHH--H--TTHHHHHHHHHHHHHHHHHHHHT-TSTT---EEEEEEETT-EEEEEECSBTTTTBCCCGGGCHHHHHHHHHH
T ss_pred             HHH--h--ccHHHHHHHHHHHHHHHHHHHHh-cCCC---eEEEeeeeE-EEEEEEccCccccccccchHHHHHHHHHHHH
Confidence            211  0  12244555556666666666666 5542   344455555 433321                113455565


Q ss_pred             HcccEEEeCCC-----eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          430 NKWHVYMTKDG-----RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       430 ~~~gI~v~~gg-----Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      + +||.+.++|     ||+.. ..+++++++++++|+++++++
T Consensus       415 ~-~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  456 (460)
T 3gju_A          415 A-SGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVKSV  456 (460)
T ss_dssp             H-TTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             H-CCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            5 599999864     88743 338899999999999998764

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.94  E-value=8.6e-25  Score=221.61  Aligned_cols=331  Identities=13%  Similarity=0.052  Sum_probs=203.6

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.+||+.|...+.-+.  .+|.+.+++.+.+.......| +.....++++.+++++. .      .+++++  ++||+
T Consensus        52 g~~ylD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-~------~~~v~~--~~sGs  119 (429)
T 4e77_A           52 GKAYIDYVGSWGPMILGH--NHPAIRQAVIEAVERGLSFGA-PTEMEVKMAQLVTDLVP-T------MDMVRM--VNSGT  119 (429)
T ss_dssp             CCEEEESSGGGTTCTTCB--TCHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHST-T------CSEEEE--ESSHH
T ss_pred             CCEEEECCCchhccccCC--CCHHHHHHHHHHHHhCcccCC-CCHHHHHHHHHHHhhCC-C------CCEEEE--eCcHH
Confidence            457899998876333333  378899999988866433344 66667788888888753 1      578999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCC-------------C------CeEEeeeecCCCCCCChhhHHH
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DAR-------------V------PWSEYRYYDPKTVGLDFEGMIA  221 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~-~~G-------------~------~~~~v~~~~~~~~~~d~~~l~~  221 (467)
                      ++++++.++.....++++|++..++|..+..... ..|             .      .+..++.       .|++.+++
T Consensus       120 ea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~  192 (429)
T 4e77_A          120 EATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY-------NDLASVRQ  192 (429)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECT-------TCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC-------CCHHHHHH
Confidence            9999985443334467899999999977654211 111             1      1111111       28999999


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012238          222 DIKAAPGGSFILLHGCAHNPTGIDP--TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (467)
Q Consensus       222 ~l~~~~~~~~~i~i~~p~NPTG~~~--~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (467)
                      .+++.++++.+++ ++|+||+|.++  +.+.+++|.++|++||+++|+||+|.+|..+.    .... ......+++   
T Consensus       193 ~l~~~~~~~~~vi-~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~----~~~~-~~~~~~pdi---  263 (429)
T 4e77_A          193 AFEQYPQEVACII-VEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVAL----AGAQ-DYYHVIPDL---  263 (429)
T ss_dssp             HHHHSTTTEEEEE-ECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBT----TCHH-HHTTCCCSE---
T ss_pred             HHHhcCCCEEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCc----chHH-HhcCCCCCe---
Confidence            9986444555554 56776665443  34559999999999999999999999883221    1112 122222333   


Q ss_pred             ecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh---ccCccCCCchHHHHHHHHHhCChhhHHHHHHH
Q 012238          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL---ARPMYSNPPVHGARIVANVVGNPALFDEWKAE  376 (467)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  376 (467)
                      .||||.++ +|+|+||++   +++++++.            +...   ......+.+.+++.++..+|+...-    ++.
T Consensus       264 ~t~sK~~~-~G~~~G~~~---~~~~~~~~------------l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~  323 (429)
T 4e77_A          264 TCLGKIIG-GGMPVGAFG---GRREVMNA------------LAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ----VGV  323 (429)
T ss_dssp             EEEEGGGG-TTSCCEEEE---ECHHHHTT------------BTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS----TTH
T ss_pred             eeeccccc-CCCCeEEEE---ECHHHHHH------------hccCCCccccCCCCCCHHHHHHHHHHHHHHHh----cCH
Confidence            48999999 899999985   78888776            4432   1122335667777776666541100    011


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC--C-----------------HHHHHHHHHcccEEEe
Q 012238          377 MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--N-----------------KAQSDNMTNKWHVYMT  437 (467)
Q Consensus       377 l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~-----------------~~~~~~ll~~~gI~v~  437 (467)
                      ++..++..+..++.|.+.+. ..+.    ....+..|.|+|+.+  .                 .++.+.+++ +||.+.
T Consensus       324 ~~~~~~~~~~l~~~L~~~~~-~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~  397 (429)
T 4e77_A          324 YETLTELTDSLATGLRHAAK-EENI----PLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLE-EGVYLA  397 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HTTC----CCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHH-TTEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hCCC----ceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHH-CCeEEe
Confidence            22222222333333443333 3443    222233455655533  1                 345566665 599999


Q ss_pred             CCC--eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          438 KDG--RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       438 ~gg--Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +++  |+.+. ..+++++++++++|+++++++
T Consensus       398 ~~~~~~~~~~~~~t~e~i~~~l~~l~~~l~~~  429 (429)
T 4e77_A          398 PSAFEAGFMSLAHSNEDIQKTVNAARRCFAKL  429 (429)
T ss_dssp             SSTTSCEECCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred             ecCCCCEEEeccCCHHHHHHHHHHHHHHHHhC
Confidence            986  55443 238899999999999998753

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.94  E-value=1.5e-25  Score=232.56  Aligned_cols=321  Identities=13%  Similarity=0.039  Sum_probs=214.1

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCce--eeeecCCchhHHHHHHHHHHHhCCC---
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRV--ATVQGLSGTGSLRLAAALIERYFPG---  177 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i--~~~~t~ggt~al~l~~~~l~~~~~g---  177 (467)
                      .+.+.+++......+. ..|....+..++++.+++++....|.+.+++++  ++  |+||++++.++.+.  ...+|   
T Consensus       113 ~~~~~~~~~~~~~~~~-~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~--t~ggt~a~~~al~a--~~~~g~~~  187 (514)
T 3mad_A          113 IAFLNEVYALQSQSNP-LHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTV--TSGGTESLLLAMKT--YRDWARAT  187 (514)
T ss_dssp             HHHHHHHHHHHTTCCT-TCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEE--ESSHHHHHHHHHHH--HHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCC-cccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEE--cCcHHHHHHHHHHH--HHHHhhhh
Confidence            3455555555543332 455556677788888877776666665555787  77  99999999998333  33344   


Q ss_pred             -----CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHH
Q 012238          178 -----AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWE  252 (467)
Q Consensus       178 -----d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~  252 (467)
                           |+|+++.|+|..+...++..|++++.++++  .++.+|++.|+++++   ++++++++++|+||||.+.+.   +
T Consensus       188 ~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~Le~~i~---~~~~~v~~~~~~nptG~~~~l---~  259 (514)
T 3mad_A          188 KGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLD--ADYRADVAAMREAIT---PNTVVVAGSAPGYPHGVVDPI---P  259 (514)
T ss_dssp             HCCSSCEEEEETTSCTHHHHHHHHHTCEEEEECBC--TTSCBCHHHHHHHCC---TTEEEEEEETTCTTTCCCCCH---H
T ss_pred             cCCCCCeEEEeCccchHHHHHHHHcCCeeEEeeeC--CCCCCCHHHHHHHhc---cCCEEEEEeCCCCCCccccCH---H
Confidence                 999999999999999999999999999984  367899999999997   578899999999999999885   5


Q ss_pred             HHHHHHHhcCCeeEEeccCCCCCCC---CCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhh
Q 012238          253 KIADVIQEKNHIPFFDVAYQGFASG---SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARC  329 (467)
Q Consensus       253 ~l~~~~~~~~~~li~Deay~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~  329 (467)
                      +|.++|++||+++|+|++|.++...   ........+ . .......+++.|++|.++ .|.++||++  +.++..... 
T Consensus       260 ~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~-~-~~~~g~d~~~~s~~K~l~-~~~~~g~~~--~~~~~~~~~-  333 (514)
T 3mad_A          260 EIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPF-D-FRLEGVTSVSADTHKYGY-GAKGTSVIL--YRRPDLLHY-  333 (514)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCC-S-TTSTTCCEEEECTTTTTC-CCSSCEEEE--ESSHHHHTT-
T ss_pred             HHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcc-c-ccCCCCcEEEECchhccC-CCCCeEEEE--EeCHHHhcc-
Confidence            7777799999999999999887531   000000000 0 011124678899999865 678899996  455544332 


Q ss_pred             hhhhHHHHHHHHHhhc---------cCccC-CCch---HHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          330 CEVAVIQVKSQLKRLA---------RPMYS-NPPV---HGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       330 ~~~~~~~~~~~l~~~~---------~~~~~-~~~~---~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                                 .....         ..... ..+.   .++.++...+.        ...+++..+++.++++++.+.|+
T Consensus       334 -----------~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~--------~~~~~~~~~~~~~~~~~l~~~L~  394 (514)
T 3mad_A          334 -----------QYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLG--------EEGYLDATRRILQAADRLKAGVR  394 (514)
T ss_dssp             -----------TCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------ccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHh
Confidence                       10000         00011 1222   22222222221        22356788888899999999998


Q ss_pred             hccCCCCCcccccCCcceEEec--CCCHHH-HHHHHHcccEEEeCC---C--eEEeccC--ChhhHHHHHHHHHHHHHhc
Q 012238          397 AKDKSGKDWSFILRQIGMFSFT--GLNKAQ-SDNMTNKWHVYMTKD---G--RISLAGL--SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       397 ~~~g~~~~~~~~~~~~g~f~~~--~l~~~~-~~~ll~~~gI~v~~g---g--Ris~~~~--~~~~i~~~~~~l~~~l~~~  466 (467)
                       ++.   ++++..+..+++.+.  +.+... .+.|. ++||.+...   +  |++++..  +++++++++++|+++++++
T Consensus       395 -~~~---g~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~  469 (514)
T 3mad_A          395 -AIP---SLKILGDPLWVIAVASDELNIYQVMEEMA-GRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQV  469 (514)
T ss_dssp             -TST---TCEESSCCSSEEEEECSSSCHHHHHHHHH-TTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHH
T ss_pred             -hCC---CeEEeCCCeEEEEEeCCCCCHHHHHHHHH-hcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence             752   156666665544332  234444 45555 459887322   1  8888732  4589999999999998753

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.94  E-value=3.4e-25  Score=226.58  Aligned_cols=349  Identities=11%  Similarity=-0.019  Sum_probs=208.2

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.|||+.|.+...-|.  .+|.|.+++.+.+.... ..|....+..+.++++++++....+  .+.++|++  ++||+
T Consensus        49 g~~ylD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~ggs  121 (459)
T 4a6r_A           49 GNKIIDGMAGLWCVNVGY--GRKDFAEAARRQMEELP-FYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFY--TNSGS  121 (459)
T ss_dssp             CCEEEETTHHHHTCTTCB--CCHHHHHHHHHHHHHCS-CCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEE--ESSHH
T ss_pred             CCEEEECCCchhcccCCC--CCHHHHHHHHHHHHhcc-ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCchH
Confidence            357899999865333333  36889999888875432 2232223333444444444433222  22568999  99999


Q ss_pred             hHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHHhhCCC-------------CeEEeeeec---CCCCCCC----
Q 012238          162 GSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYD---PKTVGLD----  215 (467)
Q Consensus       162 ~al~l~~~~l~~~------~~gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~~---~~~~~~d----  215 (467)
                      +|+..+.+++...      .++++|++..|+|..+.......+.             .+..++...   ...+ .|    
T Consensus       122 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~  200 (459)
T 4a6r_A          122 ESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEF  200 (459)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHH
Confidence            9999985443322      2578999999999887655443322             222333210   0111 34    


Q ss_pred             ----hhhHHHHHHcCC-CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012238          216 ----FEGMIADIKAAP-GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (467)
Q Consensus       216 ----~~~l~~~l~~~~-~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~  289 (467)
                          ++.|++.+++.. +++.++++...+|++|. .++.+.+++|.++|++||+++|+||+|.+|...+   ..... ..
T Consensus       201 ~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G---~~~~~-~~  276 (459)
T 4a6r_A          201 GVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG---EWFGH-QH  276 (459)
T ss_dssp             HHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSSHH-HH
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---ccchH-hh
Confidence                788888886422 34455555555555555 5589999999999999999999999999886432   11222 22


Q ss_pred             HhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhh
Q 012238          290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL  369 (467)
Q Consensus       290 ~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~  369 (467)
                      ....++++   +|||.++..|+|+||++   +++++++.        +... .......+.+.+.+++.++..+|+...-
T Consensus       277 ~~~~pdi~---t~sK~l~gg~~~lg~v~---~~~~i~~~--------~~~~-~~~~~~~t~~~~~~~~aaa~aal~~~~~  341 (459)
T 4a6r_A          277 FGFQPDLF---TAAKGLSSGYLPIGAVF---VGKRVAEG--------LIAG-GDFNHGFTYSGHPVCAAVAHANVAALRD  341 (459)
T ss_dssp             HTCCCSEE---EECGGGGTTSSCCEEEE---ECHHHHHH--------HHHH-CTTHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCee---ehhhhhcCCCCCcccee---eCHHHHHH--------hhcC-CCcccCCCCCCCHHHHHHHHHHHHHHhc
Confidence            23333433   68899985559999995   78888877        2210 0222222345667777777777652110


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEec--CC-------------CHHHHHHHHHccc
Q 012238          370 FDEWKAEMEMMA-GRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT--GL-------------NKAQSDNMTNKWH  433 (467)
Q Consensus       370 ~~~~~~~l~~~~-~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~--~l-------------~~~~~~~ll~~~g  433 (467)
                          ++.+++.+ +..+..++.+.+.|. .++.   +....+.|.|+.+.  ..             ..++.+.+++ +|
T Consensus       342 ----~~~~~~~~~~~~~~~~~~l~~~l~-~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G  412 (459)
T 4a6r_A          342 ----EGIVQRVKDDIGPYMQKRWRETFS-RFEH---VDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFR-NN  412 (459)
T ss_dssp             ----TCHHHHHHHTHHHHHHHHHHHHHT-TCTT---EEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHH-TT
T ss_pred             ----chHHHHHHHHHHHHHHHHHHHHHh-cCCC---eEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHH-CC
Confidence                11123333 333344444444444 4332   34455555543321  10             1234556665 59


Q ss_pred             EEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          434 VYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       434 I~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      |++.++|   ||+.. ..+++++++++++|+++++++
T Consensus       413 v~v~~~g~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  449 (459)
T 4a6r_A          413 LIMRACGDHIVSAPPLVMTRAEVDEMLAVAERCLEEF  449 (459)
T ss_dssp             EECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999976   77743 238899999999999998753

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.94  E-value=3.5e-24  Score=217.78  Aligned_cols=328  Identities=11%  Similarity=0.082  Sum_probs=220.5

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +...|||+.|....  ...+.+|.+.+++.+.+.....  ..| +.....++++.+++++.        .+++++  ++|
T Consensus        75 g~~ylD~~sg~~~~--~lgh~~p~v~~Ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g--------~~~v~~--~~s  141 (439)
T 2oat_A           75 GRKYFDFLSSYSAV--NQGHCHPKIVNALKSQVDKLTLTSRAF-YNNVLGEYEEYITKLFN--------YHKVLP--MNT  141 (439)
T ss_dssp             CCEEEESSGGGGTT--TTCBTCHHHHHHHHHHHTTCSCCCTTS-EESSHHHHHHHHHHHHT--------CSEEEE--ESS
T ss_pred             CCEEEEccCCcccc--cCCCCCHHHHHHHHHHHHhcCcccCcc-CCHHHHHHHHHHHHhcC--------CCEEEE--eCC
Confidence            34789999986521  2222478899999888754321  123 34457789999999862        468888  999


Q ss_pred             chhHHHHHHHHHHHh-------CCC-CEEEEcCCCCcch-HHHHhhCC------------CCeEEeeeecCCCCCCChhh
Q 012238          160 GTGSLRLAAALIERY-------FPG-AKVLISSPTWGNH-KNIFNDAR------------VPWSEYRYYDPKTVGLDFEG  218 (467)
Q Consensus       160 gt~al~l~~~~l~~~-------~~g-d~Vlv~~P~y~~~-~~~~~~~G------------~~~~~v~~~~~~~~~~d~~~  218 (467)
                      |++|++++..++..+       .+| |+|++.+|+|..+ ...+...|            ..++.+|.       .|++.
T Consensus       142 GseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~  214 (439)
T 2oat_A          142 GVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPA  214 (439)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCHHH
Confidence            999999985443211       357 8999999999765 34445444            34555544       38999


Q ss_pred             HHHHHHcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012238          219 MIADIKAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (467)
Q Consensus       219 l~~~l~~~~~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  297 (467)
                      +++.++.  ++++++++...+|+||. .++.+.+++|.++|++||+++|+||+|.++...+.   .+.. .......+++
T Consensus       215 le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~---~~~~-~~~~~~~Di~  288 (439)
T 2oat_A          215 LERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR---WLAV-DYENVRPDIV  288 (439)
T ss_dssp             HHHHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGG-GGGTCCCSEE
T ss_pred             HHHHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc---chhH-HHhCCCCcEE
Confidence            9999852  45667776666678896 57899999999999999999999999987754321   1111 1112223433


Q ss_pred             EEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHH
Q 012238          298 VAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAE  376 (467)
Q Consensus       298 ~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  376 (467)
                         ||||.++ .| +|+||++   .++++++.            +.........+.+.+++.++..+|+..      ++ 
T Consensus       289 ---t~sK~l~-~G~~~~G~v~---~~~~~~~~------------l~~~~~~~t~~~~~~~~aaa~aal~~~------~~-  342 (439)
T 2oat_A          289 ---LLGKALS-GGLYPVSAVL---CDDDIMLT------------IKPGEHGSTYGGNPLGCRVAIAALEVL------EE-  342 (439)
T ss_dssp             ---EECGGGG-TTSSCCEEEE---ECHHHHTT------------SCTTSSCCSSTTCHHHHHHHHHHHHHH------HH-
T ss_pred             ---Eeccccc-CCCCCeEEEE---ECHHHHhc------------cCCCCcccCCCcCHHHHHHHHHHHHHH------hh-
Confidence               8999999 69 9999996   67777776            443322334456667777666555321      11 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC------CH-HHHHHHHHcccEEEeCCC----eEEec
Q 012238          377 MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL------NK-AQSDNMTNKWHVYMTKDG----RISLA  445 (467)
Q Consensus       377 l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~gg----Ris~~  445 (467)
                       +...++++++++++.+.|+ +++.+. +....+. |.|+|+.+      +. ++.+.+++ +||.+.+++    ||+++
T Consensus       343 -~~~~~~~~~~~~~l~~~L~-~l~~~~-~~~~~~~-g~~~~v~l~~~~~~~~~~l~~~l~~-~Gv~v~~~~~~~iRi~~~  417 (439)
T 2oat_A          343 -ENLAENADKLGIILRNELM-KLPSDV-VTAVRGK-GLLNAIVIKETKDWDAWKVCLRLRD-NGLLAKPTHGDIIRFAPP  417 (439)
T ss_dssp             -TTHHHHHHHHHHHHHHHHT-TSCTTT-EEEEEEE-TTEEEEEECCCSSCCHHHHHHHHHH-TTEECCBSSSSEEEECCC
T ss_pred             -hhHHHHHHHHHHHHHHHHH-HhcCCC-cEEEEee-eeEEEEEEecCccHHHHHHHHHHHH-CCeEEecCCCCEEEEECc
Confidence             2456778888999999998 775321 1122334 44555432      23 44566665 599999864    88665


Q ss_pred             -cCChhhHHHHHHHHHHHHHhc
Q 012238          446 -GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       446 -~~~~~~i~~~~~~l~~~l~~~  466 (467)
                       ..+++++++++++|+++++++
T Consensus       418 ~~~t~e~i~~~l~~l~~~l~~~  439 (439)
T 2oat_A          418 LVIKEDELRESIEIINKTILSF  439 (439)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTC
T ss_pred             cCCCHHHHHHHHHHHHHHHHhC
Confidence             248899999999999998763

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.94  E-value=2.3e-25  Score=227.45  Aligned_cols=325  Identities=13%  Similarity=0.026  Sum_probs=200.8

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      .+.|||+.|.+.+.-++  .++.+.+++.+.+....  .|   .+..++++++++++....+   .+++|++  ++||++
T Consensus        57 ~~~iD~~~~~~~~~lg~--~~~~v~~a~~~~~~~~~--~~---~~~~~~~~~la~~l~~~~~---~~~~v~~--~~gg~e  124 (453)
T 2cy8_A           57 NVYLDFFGGHGALVLGH--GHPRVNAAIAEALSHGV--QY---AASHPLEVRWAERIVAAFP---SIRKLRF--TGSGTE  124 (453)
T ss_dssp             CEEEESCTTTTSCTTCB--TCHHHHHHHHHHHTTTC--SS---CSSCHHHHHHHHHHHHHCT---TCSEEEE--ESCHHH
T ss_pred             CEEEECcccHhhcccCC--CCHHHHHHHHHHHHhCC--CC---CCCCHHHHHHHHHHHhhCC---CCCEEEE--eCCHHH
Confidence            46899999865222233  37889999998886532  22   2345788888888765432   3678988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-----------CCCC------eEEeeeecCCCCCCChhhHHHHHHc
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-----------ARVP------WSEYRYYDPKTVGLDFEGMIADIKA  225 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~-----------~G~~------~~~v~~~~~~~~~~d~~~l~~~l~~  225 (467)
                      |+.++.++...+.++++|++.+|+|..+...+..           .|+.      +..++.       .|++.+++.+++
T Consensus       125 A~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~  197 (453)
T 2cy8_A          125 TTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVFAN  197 (453)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEECC----------------------------CGGGEEEECT-------TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHHHh
Confidence            9999844322244568899999999866543221           1332      122221       489999999874


Q ss_pred             CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCcc
Q 012238          226 APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (467)
Q Consensus       226 ~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  304 (467)
                      .++++++++++..+||||.+ .+.+++++|.++|++||++||+||+|.++..+    ..... .......++   .||||
T Consensus       198 ~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g----~~~~~-~~~~~~~di---~s~sK  269 (453)
T 2cy8_A          198 HGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVG----NHGMQ-ALLDVQPDL---TCLAK  269 (453)
T ss_dssp             HGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTC----TTHHH-HHHTCCCSE---EEEEG
T ss_pred             cCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccC----chhhh-HHhCCCCcE---EEECh
Confidence            32355666655556789976 47999999999999999999999999987322    11222 122222343   38999


Q ss_pred             CcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHh-----hccCccCCCchHHHHHHHHHhCC-hhhHHHHHHHHH
Q 012238          305 NLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKR-----LARPMYSNPPVHGARIVANVVGN-PALFDEWKAEME  378 (467)
Q Consensus       305 ~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~l~  378 (467)
                      .++ +|+|+||++   .++++++.            +..     .......+.+.+++.++..+|+. .  .       +
T Consensus       270 ~l~-~G~~~G~v~---~~~~~~~~------------l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~--~-------~  324 (453)
T 2cy8_A          270 ASA-GGLPGGILG---GREDVMGV------------LSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL--E-------D  324 (453)
T ss_dssp             GGG-TTSSCEEEE---ECHHHHTT------------SSSCC---------CCCCHHHHHHHHHHHHHHH--H-------T
T ss_pred             hhh-CCcceEEEe---chHHHHHH------------hccccCCCceeCCCCCCCHHHHHHHHHHHHHHh--h-------h
Confidence            999 599999996   67777776            332     01112335666777776665532 1  1       1


Q ss_pred             HHHHHHHHHHHHHHHHhhhcc----CCCCCcccccCCcceEEecCCC------------------------HHHHHHHHH
Q 012238          379 MMAGRIKNVRQKLFDSLSAKD----KSGKDWSFILRQIGMFSFTGLN------------------------KAQSDNMTN  430 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~----g~~~~~~~~~~~~g~f~~~~l~------------------------~~~~~~ll~  430 (467)
                      ...++++++++++.+.|+ ++    +.   .....+.| .|+|+.+.                        .++.+.+++
T Consensus       325 ~~~~~~~~~~~~l~~~L~-~~~~~~~~---~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  399 (453)
T 2cy8_A          325 DVCAKINDLGQFAREAMN-HLFARKGL---NWLAYGRF-SGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALIL  399 (453)
T ss_dssp             THHHHHHHHHHHHHHHHH-HHHHHTTC---CEEEECCT-TEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHH-HHHhhCCC---cEEEEEee-eEEEEEEeccccccccccccccccccccHHHHHHHHHHHHH
Confidence            234555566666666665 43    32   12234444 45555321                        234556665


Q ss_pred             cccEEEeCCCe--EEeccCChhhHHHHHHHHHHHHHhc
Q 012238          431 KWHVYMTKDGR--ISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       431 ~~gI~v~~ggR--is~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                       +||.+.+++|  +++.. +++++++++++|+++++++
T Consensus       400 -~Gv~v~~~~~~~l~~~~-t~~~i~~~l~~l~~~l~~~  435 (453)
T 2cy8_A          400 -EGVDIGGRGSVFLSAQH-EREHVEHLVTTFDRVLDRL  435 (453)
T ss_dssp             -TTEECBTTTEEECCTTC-CHHHHHHHHHHHHHHHHHH
T ss_pred             -CCeEEeCCCCEEeeccC-CHHHHHHHHHHHHHHHHHH
Confidence             6999988774  44333 8899999999999988753

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.6e-25  Score=229.76  Aligned_cols=325  Identities=14%  Similarity=0.118  Sum_probs=218.5

Q ss_pred             hHHHHHHHHHHHhcC---CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh---CC
Q 012238          103 LDVVKKAENLMLERG---ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY---FP  176 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~---~~  176 (467)
                      ++.+.+++.+.+...   ....|....|..++++.+++++....|.+.+++++++  ++||++++.++...+...   .+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~--~~ggt~a~~~a~~a~~~~~~~~~  154 (497)
T 3mc6_A           77 GDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTT--TSGGTESLLLACLSAKMYALHHR  154 (497)
T ss_dssp             CHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEE--ESSHHHHHHHHHHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEE--cCcHHHHHHHHHHHHHHHHHhcC
Confidence            456666666655431   1244656678888888888887666666555678888  999999999983332111   14


Q ss_pred             C---CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 012238          177 G---AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (467)
Q Consensus       177 g---d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~  253 (467)
                      |   |+|+++.|+|..+...++..|++++.+|+++ +++.+|++.+++.++   ++++++++++|+||||.+.+.+   +
T Consensus       155 g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~---~~~~~v~~~~p~nptG~~~~l~---~  227 (497)
T 3mc6_A          155 GITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDP-TTYQVDLGKVKKFIN---KNTVLLVGSAPNFPHGIADDIE---G  227 (497)
T ss_dssp             CCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCT-TTCSBCTTTTGGGCC---SSEEEEEEETTCTTTCCCCSCT---T
T ss_pred             CCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCc-ccCcCCHHHHHHHHh---hCCEEEEEECCCCCCCcCCCHH---H
Confidence            5   8999999999999999999999999999843 367899999999987   5788999999999999998754   7


Q ss_pred             HHHHHHhcCCeeEEeccCCCCCCC-----CCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhh
Q 012238          254 IADVIQEKNHIPFFDVAYQGFASG-----SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       254 l~~~~~~~~~~li~Deay~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                      |+++|++||+++|+|++|.++...     +.. ..+.+ .+ ....-.+++.|++|.++ .|.++||++  +.++.+...
T Consensus       228 i~~la~~~g~~livD~a~~~~~~~f~~~~~~~-~~~~~-~~-~~~g~d~~~~s~~K~l~-~~~~~g~~~--~~~~~~~~~  301 (497)
T 3mc6_A          228 LGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYK-NLPLL-DF-RVPGVTSISCDTHKYGF-APKGSSVIM--YRNSDLRMH  301 (497)
T ss_dssp             TTTHHHHTTCCEEEETTTTHHHHGGGTTTTCC-SCCCC-ST-TSTTCCEEEEETTTTTC-CCSSCEEEE--CSSHHHHTT
T ss_pred             HHHHHHHhCCEEEEECcchhhhhhhhhhhccc-CCccc-cc-cCCCCcEEEECchhhcC-CCCCceeEE--ecCHHHHhh
Confidence            777799999999999999754210     000 00000 00 11123577889999864 678899996  455433221


Q ss_pred             hhhhhHHHHHHHHHhhccCccCC-----C------c---hHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          329 CCEVAVIQVKSQLKRLARPMYSN-----P------P---VHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS  394 (467)
Q Consensus       329 ~~~~~~~~~~~~l~~~~~~~~~~-----~------~---~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~  394 (467)
                                   .......+..     +      +   ..++.++...+.        ...+++..+++.++++++.+.
T Consensus       302 -------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~--------~~~~~~~~~~~~~~~~~l~~~  360 (497)
T 3mc6_A          302 -------------QYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMG--------ENGYIESCQEIVGAAMKFKKY  360 (497)
T ss_dssp             -------------TSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------hhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHH
Confidence                         1111111110     1      1   223344433332        123566778888889999999


Q ss_pred             hhhccCCCCCcccc-cCCcceEEec--CCCHHHHHHHHHcccEEEeCCC-----eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          395 LSAKDKSGKDWSFI-LRQIGMFSFT--GLNKAQSDNMTNKWHVYMTKDG-----RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       395 l~~~~g~~~~~~~~-~~~~g~f~~~--~l~~~~~~~ll~~~gI~v~~gg-----Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      |+ +. +|+ +++. ++.++++.|.  +.+...+.+.|.++||.+..++     |++++..+++++++++++|+++++++
T Consensus       361 L~-~~-~~g-~~~~~~~~~~~v~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~  437 (497)
T 3mc6_A          361 IQ-EN-IPD-LDIMGNPRYSVISFSSKTLNIHELSDRLSKKGWHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQEL  437 (497)
T ss_dssp             HH-HS-CTT-CEECSCCCSSEEEEECTTTTHHHHHHHHHTTTCBCEECCSSCCEEEECCTTTTCTHHHHHHHHHHHHHHH
T ss_pred             HH-hc-CCC-EEEecCCCeeEEEEeCCCCCHHHHHHHHHhCCEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence            98 73 111 4554 4566666664  3455444444445699887653     99988768899999999999998754

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.94  E-value=7.7e-25  Score=221.98  Aligned_cols=321  Identities=16%  Similarity=0.112  Sum_probs=198.3

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC---------CcchHHHHHHHHHHHhCCCCcccccCceee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP---------IEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~---------~~G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      +.+.|..+.+    .  ++++.+++++.+.+...  ..|+.         .....++|+++++++..      ++++|++
T Consensus        18 ~~~~Ld~~~~----~--~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~   83 (432)
T 3a9z_A           18 RKVYMDYNAT----T--PLEPEVIQAVTEAMKEA--WGNPSSSYVAGRKAKDIINTARASLAKMIGG------KPQDIIF   83 (432)
T ss_dssp             CCEECBTTTC----C--CCCHHHHHHHHHHHHHC--CSCTTCSSHHHHHHHHHHHHHHHHHHHHHTC------CGGGEEE
T ss_pred             CcEEeeCCcc----C--CCCHHHHHHHHHHHHHh--cCCCccCcHHHHHHHHHHHHHHHHHHHHcCC------CcCeEEE
Confidence            5788877765    2  34788999998877541  22321         11347999999999743      2678998


Q ss_pred             eecCCchhHHHHHHHHHHH------hCCCCEEEEcCCCCcch-----------------HHHHhhCCCCeEEeeeecCCC
Q 012238          155 VQGLSGTGSLRLAAALIER------YFPGAKVLISSPTWGNH-----------------KNIFNDARVPWSEYRYYDPKT  211 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~------~~~gd~Vlv~~P~y~~~-----------------~~~~~~~G~~~~~v~~~~~~~  211 (467)
                        |+|+++++.++...+..      ..+||+|+++.|+|..|                 ....+..|++++.+++++ .+
T Consensus        84 --~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~-~~  160 (432)
T 3a9z_A           84 --TSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSK-VN  160 (432)
T ss_dssp             --ESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCT-TT
T ss_pred             --eCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCc-cc
Confidence              99999999997433310      14899999999999875                 344456799999999852 24


Q ss_pred             CCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC----------CeeEEeccCCCCCCCCCCC
Q 012238          212 VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN----------HIPFFDVAYQGFASGSLDN  281 (467)
Q Consensus       212 ~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~----------~~li~Deay~~~~~~~~~~  281 (467)
                      +.+|++.+++.++   ++++++++++|+||||.+++.+   +|.++|+++|          +++|+||+|.....   ..
T Consensus       161 ~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~~~---~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~---~~  231 (432)
T 3a9z_A          161 GQVEVEDILAAVR---PTTCLVTIMLANNETGVIMPIS---EISRRIKALNQIRAASGLPRVLVHTDAAQALGKR---RV  231 (432)
T ss_dssp             SSCCHHHHHHTCC---TTEEEEECCSBCTTTCBBCCHH---HHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS---CC
T ss_pred             CCcCHHHHHHhcc---CCceEEEEECcccCcccccCHH---HHHHHHHhcCcccccccCCceEEEEEchhhhCCc---cc
Confidence            6799999999886   5788999999999999999976   5667799998          99999999865431   11


Q ss_pred             ChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHH-HhhhhhhhHHHHHHHHHhh-------ccCccCCCc
Q 012238          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDL-AARCCEVAVIQVKSQLKRL-------ARPMYSNPP  353 (467)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~-~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~  353 (467)
                      +   +.   ..+.+ +++.|+||.+|   .|+||++   .+++. ...            +...       .......++
T Consensus       232 ~---~~---~~~~d-~~~~s~~K~~g---~~~G~~~---~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~  286 (432)
T 3a9z_A          232 D---VE---DLGVD-FLTIVGHKFYG---PRIGALY---VRGVGKLTP------------LYPMLFGGGQERNFRPGTEN  286 (432)
T ss_dssp             C---HH---HHCCS-EEEEEGGGTTC---CSCEEEE---ETTBTTTBC------------CCCSCCSSCGGGGTSCSCCC
T ss_pred             C---hh---hcCCC-EEEEehhHhcC---CcceEEE---EccccccCC------------cCceeecCCccccccCCCcC
Confidence            1   11   12233 56899999875   5699996   33333 222            2111       011122345


Q ss_pred             hHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCcccccC------Cc--ceEEecCC--CH
Q 012238          354 VHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFILR------QI--GMFSFTGL--NK  422 (467)
Q Consensus       354 ~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~-g~~~~~~~~~~------~~--g~f~~~~l--~~  422 (467)
                      ...+.++..++..      +.+.+++++++++++++++.+.|+ ++ |.  .+.+..+      .+  ..|.+.+.  +.
T Consensus       287 ~~~~~a~~aal~~------~~~~~~~~~~~~~~~~~~l~~~L~-~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (432)
T 3a9z_A          287 TPMIAGLGKAADL------VSENCETYEAHMRDIRDYLEERLE-AEFGK--RIHLNSRFPGVERLPNTCNFSIQGSQLRG  357 (432)
T ss_dssp             HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH-HHHGG--GEEESSCCTTCCBCTTEEEEEECSTTCCH
T ss_pred             HHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHH-hccCC--cEEEeCCCCcccCCCCEEEEEeCCCCCcH
Confidence            5555555444431      123467888899999999999998 64 42  0111111      11  22444442  33


Q ss_pred             HHHHHHHHcccEEEeC-------------------C-------C--eEEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238          423 AQSDNMTNKWHVYMTK-------------------D-------G--RISLAGL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       423 ~~~~~ll~~~gI~v~~-------------------g-------g--Ris~~~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                      +.+...+  .+|.+..                   |       +  ||+++.. +++++++++++|+++++++
T Consensus       358 ~~~~~~l--~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~  428 (432)
T 3a9z_A          358 YMVLAQC--QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQL  428 (432)
T ss_dssp             HHHHHHC--SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh--cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3322222  1344322                   1       3  9998854 6899999999999998754

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.94  E-value=5.2e-25  Score=222.89  Aligned_cols=322  Identities=14%  Similarity=0.012  Sum_probs=206.9

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      ...|||+.|...+.-++  .+|.+.+++.+.+..+....| +..-..++++.+++++.       .+++|++  ++||++
T Consensus        52 ~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~-------~~~~v~~--~~~g~e  119 (424)
T 2e7u_A           52 NRYLDYVMSWGPLILGH--AHPKVLARVRETLERGLTFGA-PSPLEVALAKKVKRAYP-------FVDLVRF--VNSGTE  119 (424)
T ss_dssp             CEEEESSGGGTTCTTCB--TCHHHHHHHHHHHHTCSCCSS-CCHHHHHHHHHHHHHCT-------TCCEEEE--ESSHHH
T ss_pred             CEEEEccccccccccCC--CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHhCC-------CCCEEEE--eCCHHH
Confidence            46899998864222233  378899999888865432344 33445667777777632       2678988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-h-------------CCC------CeEEeeeecCCCCCCChhhHHHH
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-D-------------ARV------PWSEYRYYDPKTVGLDFEGMIAD  222 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~-~-------------~G~------~~~~v~~~~~~~~~~d~~~l~~~  222 (467)
                      |+.++.++...+.++++|++.+|+|..+...+. .             .|+      .++.++.       .|++.+++.
T Consensus       120 a~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~  192 (424)
T 2e7u_A          120 ATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLREV  192 (424)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHHH
Confidence            999974432234566899999999987654322 1             222      2333332       489999998


Q ss_pred             HHcCCCCcEEEEeCCCCCC-CCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEe
Q 012238          223 IKAAPGGSFILLHGCAHNP-TGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (467)
Q Consensus       223 l~~~~~~~~~i~i~~p~NP-TG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  300 (467)
                      +++.++++++++ ++|+|| ||.++ +.+.+++|.++ ++||+++|+||+|.++..+    ..... .......++   .
T Consensus       193 l~~~~~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g----~~~~~-~~~~~~~di---~  262 (424)
T 2e7u_A          193 LKRRGEEIAAII-FEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLA----FGGAT-ELLGLKPDL---V  262 (424)
T ss_dssp             HHHHGGGEEEEE-ECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSS----TTHHH-HHHTCCCSE---E
T ss_pred             HHhCCCCEEEEE-EeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccc----hhHHH-HHhCCCcch---h
Confidence            874222444444 566665 89765 79999999999 9999999999999988433    11122 222223343   3


Q ss_pred             cCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc---cCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238          301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA---RPMYSNPPVHGARIVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l  377 (467)
                      ||||.++ +|+|+||++   +++++++.            +....   ...+.+.+.+++.++..+|+..      ++ .
T Consensus       263 s~sK~l~-~G~~~G~~~---~~~~~~~~------------~~~~~~~~~~~t~~~~~~~~aaa~aal~~~------~~-~  319 (424)
T 2e7u_A          263 TLGKILG-GGLPAAAYA---GRREIMEK------------VAPLGPVYQAGTLSGNPLAMAAGLATLELL------EE-N  319 (424)
T ss_dssp             EECGGGG-TTSSCEEEE---ECHHHHTT------------BTTTSSBCCCCTTCSCHHHHHHHHHHHHHH------HH-C
T ss_pred             hhhhhhh-CCcceEEEE---EcHHHHhh------------hcccCCcccCCCCCCCHHHHHHHHHHHHHH------Hh-c
Confidence            8999999 699999996   67777776            44311   1123356667777776665421      11 1


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcc----CCCCCcccccCCcceEEecCCC------------------HHHHHHHHHcccEE
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKD----KSGKDWSFILRQIGMFSFTGLN------------------KAQSDNMTNKWHVY  435 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~----g~~~~~~~~~~~~g~f~~~~l~------------------~~~~~~ll~~~gI~  435 (467)
                      ++..++++++++++.+.|+ ++    +.   .....+.| .|+|+.+.                  .++.+.++ ++||.
T Consensus       320 ~~~~~~~~~~~~~l~~~L~-~~~~~~~~---~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~  393 (424)
T 2e7u_A          320 PGYYAYLEDLGARLEAGLK-EVLKEKGL---PHTVNRVG-SMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIY  393 (424)
T ss_dssp             THHHHHHHHHHHHHHHHHH-HHHHHTTC---CCEEEEET-TEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEE
T ss_pred             cHHHHHHHHHHHHHHHHHH-HHHHhCCC---ceEEEeec-eEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeE
Confidence            3456666777777777776 43    42   11234444 46665442                  13455565 57999


Q ss_pred             EeCCC--e--EEeccCChhhHHHHHHHHHHHH
Q 012238          436 MTKDG--R--ISLAGLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       436 v~~gg--R--is~~~~~~~~i~~~~~~l~~~l  463 (467)
                      +.+++  |  +++.. +++++++++++|++++
T Consensus       394 v~~~~~~~~~~~~~~-t~~~i~~~l~~l~~~l  424 (424)
T 2e7u_A          394 WPPSNFEAAFLSVAH-REEDVEKTLEALRKAL  424 (424)
T ss_dssp             CCSSSSSCEECCTTC-CHHHHHHHHHHHHHHC
T ss_pred             EeccCCCceEeeccC-CHHHHHHHHHHHHHhC
Confidence            99986  4  45443 8899999999998764

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.94  E-value=8.6e-25  Score=223.17  Aligned_cols=338  Identities=10%  Similarity=0.024  Sum_probs=209.1

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC-CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~-~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +.+.|||+.|...+.-+.  .+|.|.+++.+.+..... ..+.+.....++++.+++++...      .+ |++  |+||
T Consensus        48 g~~~lD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~------~~-v~~--~~gg  116 (452)
T 3n5m_A           48 GKRYLDGMSGLWCVNSGY--GRKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGE------YV-IFF--SNSG  116 (452)
T ss_dssp             CCEEEETTHHHHTCTTCB--CCHHHHHHHHHHHTTCCCCCTTSEEHHHHHHHHHHHHHHTSC------EE-EEE--ESSH
T ss_pred             CCEEEECCcchhhccCCC--CCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHhCCCC------ce-EEE--eCch
Confidence            357899999954333333  268899999888765321 11223344556666666664321      33 877  9999


Q ss_pred             hhHHHHHHHHHHHh---C---CCCEEEEcCCCCcchHHHHhhCCCC-------------eEEeeeecCCCCC-CC-----
Q 012238          161 TGSLRLAAALIERY---F---PGAKVLISSPTWGNHKNIFNDARVP-------------WSEYRYYDPKTVG-LD-----  215 (467)
Q Consensus       161 t~al~l~~~~l~~~---~---~gd~Vlv~~P~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~-~d-----  215 (467)
                      ++|+..+.+++...   .   ++|+|++.+|+|..+.......+..             +..++..+..... -|     
T Consensus       117 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (452)
T 3n5m_A          117 SEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIY  196 (452)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGG
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhH
Confidence            99999985443322   4   7899999999998876554444332             2223221110111 12     


Q ss_pred             ----hhhHHHHHH-cCCCCcEEEEeCCC-CCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012238          216 ----FEGMIADIK-AAPGGSFILLHGCA-HNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (467)
Q Consensus       216 ----~~~l~~~l~-~~~~~~~~i~i~~p-~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~  288 (467)
                          ++.|++.++ ..++++++++++++ +| ||.++ +.+.+++|.++|++||+++|+||+|.+|...+.   .+.. .
T Consensus       197 ~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~---~~~~-~  271 (452)
T 3n5m_A          197 DVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK---AFGF-M  271 (452)
T ss_dssp             GCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG-G
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccc---cchh-h
Confidence                789999887 22346677777777 89 99766 888899999999999999999999998864321   1111 1


Q ss_pred             HHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHh------hccCccCCCchHHHHHHH
Q 012238          289 FATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKR------LARPMYSNPPVHGARIVA  361 (467)
Q Consensus       289 ~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~  361 (467)
                      ......+   +.+|||.++. | +|+||++   +++++++.            +..      .....+.+.+.+++.++.
T Consensus       272 ~~~~~~d---i~t~sK~l~~-G~~~ig~~~---~~~~i~~~------------~~~~~~~~~~~~~~t~~~~~~~~aaa~  332 (452)
T 3n5m_A          272 NYDVKPD---IITMAKGITS-AYLPLSATA---VKREIYEA------------FKGKGEYEFFRHINTFGGNPAACALAL  332 (452)
T ss_dssp             GTTCCCS---EEEECGGGGT-TSSCCEEEE---EEHHHHGG------------GCSSSTTCSCCCCCSSTTCHHHHHHHH
T ss_pred             hcCCCCC---EEeecccccC-CCcceEEEE---ECHHHHHH------------HhhccCCCCccccCCCCCCHHHHHHHH
Confidence            1111223   3368999995 9 9999995   77888776            532      112234466777777777


Q ss_pred             HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCcccccCCcceEEecCC----------C----HHHH
Q 012238          362 NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL----------N----KAQS  425 (467)
Q Consensus       362 ~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~--g~~~~~~~~~~~~g~f~~~~l----------~----~~~~  425 (467)
                      .+|+...      +  +...++++++++++.+.|+ ++  +.+. +....+.|.++ ++.+          +    .++.
T Consensus       333 aal~~~~------~--~~~~~~~~~~~~~l~~~L~-~~~~~~~~-~~~~~~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~  401 (452)
T 3n5m_A          333 KNLEIIE------N--ENLIERSAQMGSLLLEQLK-EEIGEHPL-VGDIRGKGLLV-GIELVNDKETKEPIDNDKIASVV  401 (452)
T ss_dssp             HHHHHHH------H--TTHHHHHHHHHHHHHHHHH-HHHTTCTT-EEEEEESSSCE-EEEEEEETTTTEECCHHHHHHHH
T ss_pred             HHHHHHH------h--ccHHHHHHHHHHHHHHHHH-HHHhcCCC-eEEEEEEEEEE-EEEEecCCcccCCCCHHHHHHHH
Confidence            6664211      0  1233444444444444444 32  1111 33445555543 3322          1    2345


Q ss_pred             HHHHHcccEEEeCCC----------eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          426 DNMTNKWHVYMTKDG----------RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       426 ~~ll~~~gI~v~~gg----------Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +.+++ +||.+.+++          ||+++. .+++++++++++|+++++++
T Consensus       402 ~~l~~-~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  452 (452)
T 3n5m_A          402 NACKE-KGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMERI  452 (452)
T ss_dssp             HHHHH-TTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHH-CCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhC
Confidence            56665 599998862          776332 38899999999999998753

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.94  E-value=5.9e-25  Score=221.57  Aligned_cols=317  Identities=10%  Similarity=0.023  Sum_probs=207.9

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCc----CCC---CcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE----YLP---IEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~----Y~~---~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (467)
                      ++.+.|..+.+    +  +.++.+.+++.+.+.......    |.+   .....++++.+++++..      ++++|++ 
T Consensus        27 ~~~~yld~~~~----~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~-   93 (416)
T 1qz9_A           27 EGVIYLDGNSL----G--ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGA------RDGEVVV-   93 (416)
T ss_dssp             TTCEECCTTTS----C--CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTC------CTTSEEE-
T ss_pred             CCeEeecCCCc----C--CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCC------CcccEEE-
Confidence            35777777654    3  336778888888775421110    111   24567888888888533      2678988 


Q ss_pred             ecCCchhHHHHHHHHHHHh----CCCCEE-EEcCCCCcchHHHH----hhC--CCCeEEeeeecCCCCCCChhhHHHHHH
Q 012238          156 QGLSGTGSLRLAAALIERY----FPGAKV-LISSPTWGNHKNIF----NDA--RVPWSEYRYYDPKTVGLDFEGMIADIK  224 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~~~----~~gd~V-lv~~P~y~~~~~~~----~~~--G~~~~~v~~~~~~~~~~d~~~l~~~l~  224 (467)
                       |+|+++++.++...+..+    .+||+| ++..++|+.+...+    +..  |++++.++.         ++.+++.++
T Consensus        94 -~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i~  163 (416)
T 1qz9_A           94 -TDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAID  163 (416)
T ss_dssp             -CSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHCS
T ss_pred             -eCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHhC
Confidence             999999998763322123    789975 45556777654433    223  888887764         688888886


Q ss_pred             cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCcc
Q 012238          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (467)
Q Consensus       225 ~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  304 (467)
                         ++++++++++|+||||.+++   +++|.++|+++|+++|+|++|....   ...+   +..+    ...+++.|++|
T Consensus       164 ---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~---~~~~---~~~~----~~d~~~~s~~K  227 (416)
T 1qz9_A          164 ---QDTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSAGA---VPVD---LHQA----GADYAIGCTYK  227 (416)
T ss_dssp             ---TTEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTT---SCCC---HHHH----TCSEEEECSSS
T ss_pred             ---CCceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEccccccC---cCCC---hhhc----CCCEEEecCcc
Confidence               57889999999999999998   5677888999999999999986321   1111   2111    23478899999


Q ss_pred             CcccCCCcc-ceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc-----------------------cCccCCCchHHHHHH
Q 012238          305 NLGLYAERI-GAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA-----------------------RPMYSNPPVHGARIV  360 (467)
Q Consensus       305 ~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~~~~~~~~  360 (467)
                      .++ +|.|+ ||++   .++++++.            ++...                       .....+++...+.++
T Consensus       228 ~l~-~g~~~~g~l~---~~~~~~~~------------l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  291 (416)
T 1qz9_A          228 YLN-GGPGSQAFVW---VSPQLCDL------------VPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMV  291 (416)
T ss_dssp             TTC-CCTTCCCEEE---ECTTTTTT------------SCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHH
T ss_pred             cCC-CCCCCeEEEE---ECHHHHhc------------cCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHH
Confidence            985 67888 9996   55666554            32210                       011223444444444


Q ss_pred             HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CCCCCcccccCC----cceEEecCCC-HH-HHHHHHH
Q 012238          361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD----KSGKDWSFILRQ----IGMFSFTGLN-KA-QSDNMTN  430 (467)
Q Consensus       361 ~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~----g~~~~~~~~~~~----~g~f~~~~l~-~~-~~~~ll~  430 (467)
                      ..+|....     .+.++++.++++++++++.+.|+ ++    |    +.+..+.    .+.++|+.+. .+ +.+.+. 
T Consensus       292 ~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-  360 (416)
T 1qz9_A          292 ECGLDVFA-----QTDMASLRRKSLALTDLFIELVE-QRCAAHE----LTLVTPREHAKRGSHVSFEHPEGYAVIQALI-  360 (416)
T ss_dssp             HHHHHHHT-----TSCHHHHHHHHHHHHHHHHHHHH-HHHTTSC----CEECSCSSGGGBCSEEEEECTTHHHHHHHHH-
T ss_pred             HHHHHHHH-----hcCHHHHHHHHHHHHHHHHHHHH-hhccCCC----eEEeCCCCHHHcCCEEEEecCCHHHHHHHHH-
Confidence            44442110     01256788889999999999998 75    4    4555543    2345666542 33 445554 


Q ss_pred             cccEEEeCC--C--eEEec--cCChhhHHHHHHHHHHHHHh
Q 012238          431 KWHVYMTKD--G--RISLA--GLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       431 ~~gI~v~~g--g--Ris~~--~~~~~~i~~~~~~l~~~l~~  465 (467)
                      ++||.+...  +  ||+++  ..+++++++++++|++++++
T Consensus       361 ~~gi~~~~~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~  401 (416)
T 1qz9_A          361 DRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGEILDR  401 (416)
T ss_dssp             TTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hCCcEeccCCCCeEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence            569998653  2  99987  45889999999999999865

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.94  E-value=1.3e-24  Score=220.60  Aligned_cols=328  Identities=12%  Similarity=0.088  Sum_probs=210.5

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +...|||+.|...  ....+.+|.+.+++.+.+.....  ..| +.....++++.+++++.        .+++++  ++|
T Consensus        64 G~~ylD~~~g~~~--~~lgh~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g--------~~~v~~--~~s  130 (433)
T 1z7d_A           64 DKRYYDFLSAYSS--VNQGHCHPNILNAMINQAKNLTICSRAF-FSVPLGICERYLTNLLG--------YDKVLM--MNT  130 (433)
T ss_dssp             CCEEEESSHHHHT--TTTCBTCHHHHHHHHHHHTTCSCCCTTS-EEHHHHHHHHHHHHHHT--------CSEEEE--ESS
T ss_pred             CCEEEEcccchhh--cccCCCCHHHHHHHHHHHHhCCCccCCc-CCHHHHHHHHHHHhhcC--------CCeEEE--eCC
Confidence            3478999988651  12332378899999888754321  123 44456788888888852        468988  999


Q ss_pred             chhHHHHHHHHHHH-------hCCC-CEEEEcCCCCcchHH-HHhhCC------------CCeEEeeeecCCCCCCChhh
Q 012238          160 GTGSLRLAAALIER-------YFPG-AKVLISSPTWGNHKN-IFNDAR------------VPWSEYRYYDPKTVGLDFEG  218 (467)
Q Consensus       160 gt~al~l~~~~l~~-------~~~g-d~Vlv~~P~y~~~~~-~~~~~G------------~~~~~v~~~~~~~~~~d~~~  218 (467)
                      |++|+.++..+...       +.+| |+|++++|+|..+.. .+...|            ..++.+|.       .|++.
T Consensus       131 GseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~  203 (433)
T 1z7d_A          131 GAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLEA  203 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHHH
Confidence            99999998544321       1367 999999999987643 333333            23333332       38999


Q ss_pred             HHHHHHcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012238          219 MIADIKAAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (467)
Q Consensus       219 l~~~l~~~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  297 (467)
                      +++.++.  +++++++++..+|+||.+ ++.+.+++|.++|++||+++|+||+|.++...+.   .... .......+++
T Consensus       204 le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~---~~~~-~~~~~~~di~  277 (433)
T 1z7d_A          204 LEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK---LLCV-HHYNVKPDVI  277 (433)
T ss_dssp             HHHHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGG-GGGTCCCSEE
T ss_pred             HHHHhCC--CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc---chhh-HhcCCCCCEE
Confidence            9999952  466777766667789975 7888999999999999999999999987754321   1111 1112223433


Q ss_pred             EEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHH
Q 012238          298 VAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAE  376 (467)
Q Consensus       298 ~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  376 (467)
                         ||||.++ +| +|+||++   .++++++.            +.........+.+.+++.++..+|+..      ++ 
T Consensus       278 ---t~sK~l~-~G~~~~G~v~---~~~~~~~~------------l~~~~~~~t~~~~~~~~aaa~aal~~~------~~-  331 (433)
T 1z7d_A          278 ---LLGKALS-GGHYPISAVL---ANDDIMLV------------IKPGEHGSTYGGNPLAASICVEALNVL------IN-  331 (433)
T ss_dssp             ---EECGGGG-TTSSCCEEEE---ECHHHHTT------------CCTTCCCCTTTTCHHHHHHHHHHHHHH------HH-
T ss_pred             ---EECcccc-CCCCCeEEEE---ECHHHHhh------------hccccccccCCCCHHHHHHHHHHHHHH------Hh-
Confidence               8999999 89 9999996   67777776            443322334456667777766665321      11 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcc--CCCCCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCCC----eEEe
Q 012238          377 MEMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKDG----RISL  444 (467)
Q Consensus       377 l~~~~~~~~~~r~~l~~~l~~~~--g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~gg----Ris~  444 (467)
                       +...++++++++++.+.|+ ++  +.+. +....+. |.|+|+.+     +. ++.+.+++ +||.+.+++    ||++
T Consensus       332 -~~~~~~~~~~~~~l~~~L~-~l~~~~~~-~~~~~~~-g~~~~i~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~iRi~~  406 (433)
T 1z7d_A          332 -EKLCENAEKLGGPFLENLK-RELKDSKI-VRDVRGK-GLLCAIEFKNELVNVLDICLKLKE-NGLITRDVHDKTIRLTP  406 (433)
T ss_dssp             -TTHHHHHHHHHHHHHHHHH-HHHTTCTT-EEEEEEE-TTEEEEEECTTTCCHHHHHHHHHH-TTEECCEETTTEEEECC
T ss_pred             -ccHHHHHHHHHHHHHHHHH-HHHHhCCC-eEEEEee-eeEEEEEEccChhHHHHHHHHHHH-CCeEEecCCCCEEEEEC
Confidence             1455667777888888887 65  4321 1223344 44555532     23 34566665 699999863    8876


Q ss_pred             cc-CChhhHHHHHHHHHHHHHhc
Q 012238          445 AG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       445 ~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +. .+++++++++++|+++++++
T Consensus       407 ~~~~t~e~i~~~l~~l~~~l~~~  429 (433)
T 1z7d_A          407 PLCITKEQLDECTEIIVKTVKFF  429 (433)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCHHHHHHHHHHHHHHHHHH
Confidence            53 48899999999999998764

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.94  E-value=2.3e-24  Score=215.60  Aligned_cols=309  Identities=12%  Similarity=0.015  Sum_probs=210.3

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (467)
                      ++|+|+.  |    .   .++.+.+++.+.+...   .|.+..+..++|+++++++..        +++++  ++||+++
T Consensus         9 ~~i~~~~--p----~---~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~~gt~a   66 (393)
T 1mdo_A            9 DFLPFSR--P----A---MGAEELAAVKTVLDSG---WITTGPKNQELEAAFCRLTGN--------QYAVA--VSSATAG   66 (393)
T ss_dssp             CCBCSCC--C----C---CCHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHCC--------SEEEE--ESCHHHH
T ss_pred             cccccCC--C----C---CCHHHHHHHHHHHhcC---CcCCChHHHHHHHHHHHHhCC--------CcEEE--ecChHHH
Confidence            4677774  3    2   2567788888887653   244678899999999999743        36777  8999999


Q ss_pred             HHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          164 LRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       164 l~l~~~~l~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      +.++  +... +.+||+|+++.|+|..+...++..|++++.++++ ++++.+|++.+++.++   +++++++++   |||
T Consensus        67 l~~~--~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~---~~~~~v~~~---~~~  137 (393)
T 1mdo_A           67 MHIA--LMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVD-RDTLMVTPEHIEAAIT---PQTKAIIPV---HYA  137 (393)
T ss_dssp             HHHH--HHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC-TTTCCBCHHHHHHHCC---TTEEEECCB---CGG
T ss_pred             HHHH--HHHcCCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEecc-CCcCCCCHHHHHHhcC---CCceEEEEe---CCC
Confidence            9998  3434 5699999999999999999999999999999985 3457799999999987   467777754   589


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCC-CCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF-ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      |...+   +++|.++|+++|+++|+|++|... .+..   ...      ..  .++++.||||..+++|.|+||++  +.
T Consensus       138 G~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~---~~~------~~--~d~~~~S~~k~K~l~~~~~g~~~--~~  201 (393)
T 1mdo_A          138 GAPAD---LDAIYALGERYGIPVIEDAAHATGTSYKG---RHI------GA--RGTAIFSFHAIKNITCAEGGIVV--TD  201 (393)
T ss_dssp             GCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETT---EET------TS--SSEEEEECCTTSSSCSSSCEEEE--ES
T ss_pred             CCcCC---HHHHHHHHHHcCCeEEEECccccCCeECC---eec------CC--CCeEEEeCCCCCccccccceEEE--eC
Confidence            99876   567778899999999999999853 3321   111      11  57889999944444556899995  44


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCcc------------------------CCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMY------------------------SNPPVHGARIVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------~~~~~~~~~~~~~~L~~~~~~~~~~~~l  377 (467)
                      ++++++.            +........                        ...+.+.+.++...+          +.+
T Consensus       202 ~~~~~~~------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l----------~~~  259 (393)
T 1mdo_A          202 NPQFADK------------LRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL----------QKL  259 (393)
T ss_dssp             CHHHHHH------------HHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHH----------HTH
T ss_pred             CHHHHHH------------HHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHH----------HHH
Confidence            5777776            332221100                        112333333322222          224


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCccccc-C-----CcceEEecCC-------CHHHHHHHHHcccEEEeCC-----
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL-R-----QIGMFSFTGL-------NKAQSDNMTNKWHVYMTKD-----  439 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~-~-----~~g~f~~~~l-------~~~~~~~ll~~~gI~v~~g-----  439 (467)
                      ++..++.+++++++.+.|+ +++    +++.. +     .+++++|+.+       +.+.+.+.+.++||.+.++     
T Consensus       260 ~~~~~~~~~~~~~l~~~L~-~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~  334 (393)
T 1mdo_A          260 DALNARRAAIAAQYHQAMA-DLP----FQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAH  334 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TSS----CEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGG
T ss_pred             HHHHHHHHHHHHHHHHHHh-cCC----cccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccc
Confidence            4555666677888888888 765    23321 1     3444555533       4444444444569987763     


Q ss_pred             ---------------------C---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          440 ---------------------G---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 ---------------------g---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                                           .   ||++. ..+++++++++++|+++++..
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~  386 (393)
T 1mdo_A          335 TQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQG  386 (393)
T ss_dssp             GSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred             cChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence                                 1   66665 248899999999999998754

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.94  E-value=4.6e-25  Score=217.77  Aligned_cols=317  Identities=11%  Similarity=0.030  Sum_probs=204.8

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--CCcCCCC--cchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.++|.-|..       .+++.+.+++.+.+..+.  ...+.+.  .-..++++.+++++...     ++++|++  |+|
T Consensus         4 ~~~~~~p~p~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-----~~~~v~~--~~g   69 (362)
T 3ffr_A            4 NKIYFTPGPS-------ELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELP-----SNYEVLF--LAS   69 (362)
T ss_dssp             CCEEECSSSC-------CCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCC-----TTEEEEE--ESC
T ss_pred             cceeccCCCc-------CCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCC-----CCcEEEE--eCC
Confidence            4577775422       236777777766664432  0111111  22456666677764332     2568888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCc-chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWG-NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~-~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p  238 (467)
                      |++++.++  +.....+ +.+++..|.|. .+...++..|++++.++.  +.++.+|++.++  ++   ++++++++++|
T Consensus        70 ~t~al~~~--~~~l~~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~--~~---~~~~~v~~~~~  139 (362)
T 3ffr_A           70 ATEIWERI--IQNCVEK-KSFHCVNGSFSKRFYEFAGELGREAYKEEA--AFGKGFYPADIT--VP---ADAEIICLTHN  139 (362)
T ss_dssp             HHHHHHHH--HHHHCSS-EEEEEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCGGGCC--CC---TTCCEEEEESE
T ss_pred             chHHHHHH--HHhccCC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEec--CCCCCCCHHHHh--cc---CCccEEEEEcC
Confidence            99999998  4444556 55556666666 234577788999999988  345789999998  33   67889999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhc-CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc-cCCCccceE
Q 012238          239 HNPTGIDPTPEQWEKIADVIQEK-NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAM  316 (467)
Q Consensus       239 ~NPTG~~~~~~~l~~l~~~~~~~-~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~  316 (467)
                      +||||.+++.+   +|+++|++| |+++|+|++|......   .+.         ....+++.|+||.++ ++|+  |++
T Consensus       140 ~nptG~~~~l~---~i~~la~~~p~~~li~D~a~~~~~~~---~~~---------~~~d~~~~s~~K~~~~~~G~--g~~  202 (362)
T 3ffr_A          140 ETSSGVSMPVE---DINTFRDKNKDALIFVDAVSSLPYPK---FDW---------TKIDSVFFSVQKCFGLPAGL--GVW  202 (362)
T ss_dssp             ETTTTEECCHH---HHTTSGGGSTTSEEEEECTTTTTSSC---CCT---------TSCSEEEEETTSTTCCCSCC--EEE
T ss_pred             CCCcceeCCHH---HHHHHHHhCCCCEEEEecccccCCcc---cCh---------hHCcEEEEecccccCCCCce--EEE
Confidence            99999999955   677779999 9999999997754422   111         013488999999999 7884  666


Q ss_pred             EEecCCHHHHhhhhhhhHHHHHHHH----------------HhhccCc-cCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238          317 NVVCSSSDLAARCCEVAVIQVKSQL----------------KRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEM  379 (467)
Q Consensus       317 ~~v~~~~~~~~~~~~~~~~~~~~~l----------------~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~  379 (467)
                      +   .++++++.        +....                ....... ..+++...+.++..++..  +.   ...+++
T Consensus       203 ~---~~~~~~~~--------~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~--~~---~~~~~~  266 (362)
T 3ffr_A          203 I---LNDRVIEK--------SKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGD--ML---QISADG  266 (362)
T ss_dssp             E---EEHHHHHH--------HHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH--HH---HHCHHH
T ss_pred             E---ECHHHHHH--------hhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHH--HH---HccHHH
Confidence            4   56677665        22111                0001111 234555555454444421  10   112677


Q ss_pred             HHHHHHHHHHHHHHHhhhcc-CCCCCcccccC----CcceEEecCC--CHH-HHHHHHHcccEEEeCC------C--eEE
Q 012238          380 MAGRIKNVRQKLFDSLSAKD-KSGKDWSFILR----QIGMFSFTGL--NKA-QSDNMTNKWHVYMTKD------G--RIS  443 (467)
Q Consensus       380 ~~~~~~~~r~~l~~~l~~~~-g~~~~~~~~~~----~~g~f~~~~l--~~~-~~~~ll~~~gI~v~~g------g--Ris  443 (467)
                      +.++++++++++.+.|+ ++ |    ++...+    ..+.++|+.+  +.+ +.+.+.+ +||.+.+|      +  |||
T Consensus       267 ~~~~~~~~~~~l~~~L~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~g~~~~~~~~iRis  340 (362)
T 3ffr_A          267 IRKQTEEKAALINTYIE-SSKV----FSFGVEDAKLRSMTTIVANTTMLPGEINKILEP-FDMAVGAGYGSKKETQIRIA  340 (362)
T ss_dssp             HHHHHHHHHHHHHHHHH-HCSS----EEESSSCGGGBCSSEEEEEESSCHHHHHHHHGG-GTEEEEECSGGGTTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHH-HccC----ceeccCChhhcCCceEEEecCCCHHHHHHHHHH-CCeEEecCccccCCCEEEEE
Confidence            88889999999999998 76 4    454442    2233444422  444 4555555 59999976      2  999


Q ss_pred             eccC-ChhhHHHHHHHHHHHH
Q 012238          444 LAGL-SLAKCEYLADAIIDSY  463 (467)
Q Consensus       444 ~~~~-~~~~i~~~~~~l~~~l  463 (467)
                      ++.. +++++++++++|++++
T Consensus       341 ~~~~~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          341 NFPAHSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHh
Confidence            8743 7799999999998864

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.94  E-value=9.4e-25  Score=222.64  Aligned_cols=338  Identities=11%  Similarity=0.051  Sum_probs=213.0

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--C-cCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--K-EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~-~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      ...+|++.|.+-..-++  .++.+.+++.+.+.....  . .| +.....++++.+++++.      .++++|++  |+|
T Consensus        50 ~~~lD~~~~~~~~~lG~--~~~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~------~~~~~v~~--~~g  118 (449)
T 3a8u_X           50 RKVYDSLSGLWTCGAGH--TRKEIQEAVAKQLSTLDYSPGFQY-GHPLSFQLAEKITDLTP------GNLNHVFF--TDS  118 (449)
T ss_dssp             CEEEETTHHHHTCTTCB--SCHHHHHHHHHHTTTCSCCCSSSC-CCHHHHHHHHHHHTTSS------TTEEEEEE--ESS
T ss_pred             CEEEECCccHhhccCCC--CCHHHHHHHHHHHHhCCCcccccc-CCHHHHHHHHHHHHhCC------CCCCEEEE--cCc
Confidence            46789987764222232  268899999888754210  1 23 22233455555555421      13678999  999


Q ss_pred             chhHHHHHHHHHHHhC------CCCEEEEcCCCCcchH-HHHhhCCC------------CeEEeeeecC--CC-CCCC--
Q 012238          160 GTGSLRLAAALIERYF------PGAKVLISSPTWGNHK-NIFNDARV------------PWSEYRYYDP--KT-VGLD--  215 (467)
Q Consensus       160 gt~al~l~~~~l~~~~------~gd~Vlv~~P~y~~~~-~~~~~~G~------------~~~~v~~~~~--~~-~~~d--  215 (467)
                      |++|++++...+..+.      +||+|++.+|+|..+. ..+...|.            .+..++....  .. .++|  
T Consensus       119 gsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~  198 (449)
T 3a8u_X          119 GSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPK  198 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCS
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChH
Confidence            9999999844432211      6799999999998764 34544442            2344443111  01 1356  


Q ss_pred             ------hhhHHHHHHcCC-CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012238          216 ------FEGMIADIKAAP-GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR  287 (467)
Q Consensus       216 ------~~~l~~~l~~~~-~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~  287 (467)
                            ++.+++.+++.. +++++++++..+||||. ..+.+++++|.++|++||+++|+||+|.+|...+   ......
T Consensus       199 ~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g---~~~~~~  275 (449)
T 3a8u_X          199 EGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG---SMFGAD  275 (449)
T ss_dssp             SSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccC---cchhhh
Confidence                  899999987422 24556655544578997 6679999999999999999999999998875432   111222


Q ss_pred             HHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh---------ccCccCCCchHHH
Q 012238          288 LFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL---------ARPMYSNPPVHGA  357 (467)
Q Consensus       288 ~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~  357 (467)
                       ......+++   ||||.++ .| +|+||++   .++++++.            +...         ......+.+.+++
T Consensus       276 -~~~~~~di~---s~sK~l~-~G~~~~G~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~t~~~~~~~~  335 (449)
T 3a8u_X          276 -SFGVTPDLM---CIAKQVT-NGAIPMGAVI---ASTEIYQT------------FMNQPTPEYAVEFPHGYTYSAHPVAC  335 (449)
T ss_dssp             -HHTCCCSEE---EECGGGG-TTSSCCEEEE---EEHHHHHH------------HHTCSSCTTSCSSCCCCTTTTCHHHH
T ss_pred             -hcCCCCCEE---EEccccc-CCCCceEEEE---ECHHHHHH------------hhccCcccccccccccCCCcccHHHH
Confidence             222223433   8899998 58 9999985   56677776            5442         1122335566777


Q ss_pred             HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceEEecCCC-----H-----HHHH
Q 012238          358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGLN-----K-----AQSD  426 (467)
Q Consensus       358 ~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~~~~l~-----~-----~~~~  426 (467)
                      .++..+|+..      ++  +...++++++++++.+.|+ +++ ++. +....+ .|.|+|+.+.     .     ++.+
T Consensus       336 aa~~aal~~~------~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~-~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~  404 (449)
T 3a8u_X          336 AAGLAALCLL------QK--ENLVQSVAEVAPHFEKALH-GIKGAKN-VIDIRN-FGLAGAIQIAPRDGDAIVRPFEAGM  404 (449)
T ss_dssp             HHHHHHHHHH------HH--TTHHHHHHHHHHHHHHHHH-TTTTSTT-EEEEEE-ETTEEEEEECCBTTBSSHHHHHHHH
T ss_pred             HHHHHHHHHH------Hh--cCHHHHHHHHHHHHHHHHH-HHhcCCC-eEEEee-eEEEEEEEEecCcccccccHHHHHH
Confidence            6666665321      11  2456677788888888887 643 211 112233 3556665431     1     4566


Q ss_pred             HHHHcccEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          427 NMTNKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       427 ~ll~~~gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .+++ +||.+.++|   ||++. ..+++++++++++|+++++++
T Consensus       405 ~l~~-~Gv~v~~~g~~iRis~~~~~t~~~i~~~l~~l~~~l~~~  447 (449)
T 3a8u_X          405 ALWK-AGFYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVLNKL  447 (449)
T ss_dssp             HHHH-HTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHH-CCcEEecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence            6665 599999875   88854 348899999999999998764

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.93  E-value=1e-25  Score=229.98  Aligned_cols=230  Identities=13%  Similarity=0.085  Sum_probs=157.3

Q ss_pred             CcEEecCc-ccCCCCCCCCchHHHHHHHHHH---HhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           84 KKLNLGVG-AYRTEELQPYVLDVVKKAENLM---LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        84 ~~i~l~~G-~~~d~~~~p~~~~~v~~a~~~~---~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      ++|+|++| ++    ..+. ++.+.++....   ........|. ..|.+ +++++++++....|    .+++++  +.|
T Consensus        90 ~~i~l~~g~~~----~~~~-~~~i~~a~~~~~~~~~~~~~~~Y~-~~g~~-~~~~l~~~la~~~g----~~~~i~--~~s  156 (464)
T 1ibj_A           90 LLVNLDNKFDP----FDAM-STPLYQTATFKQPSAIENGPYDYT-RSGNP-TRDALESLLAKLDK----ADRAFC--FTS  156 (464)
T ss_dssp             HHTCCCCSSCT----TCCS-SCCCCCCSBCCCSSSSCCCSCSBT-TTCCH-HHHHHHHHHHHHHT----CSEEEE--ESS
T ss_pred             eEEECCCCCCC----CCCC-CccHHhhhhhhhhcccccCCcccc-CCCCH-HHHHHHHHHHHHhC----CCeEEE--ECC
Confidence            68899987 44    2232 33344443321   1112235564 34544 45555555443323    236666  688


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i  235 (467)
                      |++++.++   +..+.+||+|+++.|+|..+...    ++..|++++.++.       .|++.+++.++   ++++++++
T Consensus       157 Gt~al~~~---l~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~-------~d~~~l~~~i~---~~tk~v~l  223 (464)
T 1ibj_A          157 GMAALSAV---THLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT-------TKLDEVAAAIG---PQTKLVWL  223 (464)
T ss_dssp             HHHHHHHH---HTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT-------TSHHHHHHHCC---SSEEEEEE
T ss_pred             HHHHHHHH---HHHhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCC-------CCHHHHHHHhc---cCceEEEE
Confidence            89999876   34567999999999999988764    5678999988876       28899999887   57899999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc-CCCccc
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIG  314 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~RiG  314 (467)
                      ++|+||||.+++   +++|+++|++||+++|+||+|......    .  ++    + .+.++++.|+||.++. .|+|+|
T Consensus       224 ~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~g~~~----~--~~----~-~~~div~~S~sK~~~g~~Gl~~G  289 (464)
T 1ibj_A          224 ESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLS----R--PL----E-LGADIVMHSATKFIAGHSDVMAG  289 (464)
T ss_dssp             CSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTC----C--GG----G-TTCSEEEEETTTTTTCSSCCCCE
T ss_pred             eCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCcccccC----C--hh----h-cCCEEEEECCcccccCCCCCcEE
Confidence            999999999996   568888899999999999998753211    1  11    1 2468999999998864 499999


Q ss_pred             eEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCCh
Q 012238          315 AMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNP  367 (467)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~  367 (467)
                      |++  +.++++++.            +.........+.+.+.+.++...|.+.
T Consensus       290 ~l~--~~~~~l~~~------------l~~~~~~~g~~~~~~~~~a~~~al~~~  328 (464)
T 1ibj_A          290 VLA--VKGEKLAKE------------VYFLQNSEGSGLAPFDCWLCLRGIKTM  328 (464)
T ss_dssp             EEE--ECSHHHHHH------------HHHHHHHTTCBCCHHHHHHHHHHHTTH
T ss_pred             EEE--EChHHHHHH------------HHHHHHhcCCCCCHHHHHHHHhchhhH
Confidence            996  454677776            444433233455677777777777653

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.93  E-value=1.1e-24  Score=219.66  Aligned_cols=323  Identities=16%  Similarity=0.150  Sum_probs=200.2

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC------CCcchHHHHH----HHHHHHhCCCCcccccCcee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAAFNK----VTAELLFGADNSVLKEQRVA  153 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~------~~~G~~~lr~----aia~~l~~~~~~~~~~~~i~  153 (467)
                      +.|+|..+..      +. ++.+.+++.+.+.......|.      ......++++    .+++++..      ++++|+
T Consensus        26 ~~i~l~~~~~------~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~~i~   92 (417)
T 3n0l_A           26 EGLEMIASEN------FT-LPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNC------KFANVQ   92 (417)
T ss_dssp             HSEECCTTCC------CC-CHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC------SEEECC
T ss_pred             cCeeeecccC------CC-CHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCC------CCcceE
Confidence            5688865433      22 788999988876433222332      2233444544    56666432      255677


Q ss_pred             eeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCc
Q 012238          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS  230 (467)
Q Consensus       154 ~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  230 (467)
                      +  ++| ++++.++  +...+.+||+|+++.|+|..+..   .+...|..+..+++..++++.+|++.+++.+++  .++
T Consensus        93 ~--~sG-t~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~--~~~  165 (417)
T 3n0l_A           93 P--NSG-SQANQGV--YAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKK--EKP  165 (417)
T ss_dssp             C--SSH-HHHHHHH--HHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHH--HCC
T ss_pred             e--ccH-HHHHHHH--HHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHh--cCC
Confidence            7  666 8999998  44457799999999999987654   444445544444433235677999999999974  245


Q ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC
Q 012238          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (467)
Q Consensus       231 ~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (467)
                      +++++++|+|  |..++   +++|.++|++||+++|+||++. ++.+.+.  ....+      ....+++.|+||.+  +
T Consensus       166 ~~v~~~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~--~~~~~------~~~di~~~s~sK~l--~  230 (417)
T 3n0l_A          166 KLIVCGASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGE--HPSPF------PYAHVVSSTTHKTL--R  230 (417)
T ss_dssp             SEEEECCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCCT------TTCSEEEEESSTTT--C
T ss_pred             eEEEECCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhccc--CCCcc------ccceEEEeeCcccc--C
Confidence            6777788886  77777   6688888999999999999953 3322211  00000      12358899999987  7


Q ss_pred             CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238          310 AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  388 (467)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r  388 (467)
                      |+|.||++  +.++++++.            +......... +++...+.++..++..     .+.+++++.++++++++
T Consensus       231 g~~~G~~~--~~~~~~~~~------------~~~~~~~~~~~~~~~~~~aa~~~a~~~-----~~~~~~~~~~~~~~~~~  291 (417)
T 3n0l_A          231 GPRGGIIM--TNDEELAKK------------INSAIFPGIQGGPLMHVIAAKAVGFKF-----NLSDEWKVYAKQVRTNA  291 (417)
T ss_dssp             SCSCEEEE--ESCHHHHHH------------HHHHHTTTTCSSCCHHHHHHHHHHHHH-----HTSHHHHHHHHHHHHHH
T ss_pred             CCCeeEEE--ECCHHHHHH------------HhhhhCCcccCCcHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHH
Confidence            89999996  444777776            4444333222 3333333333322211     11234567888888899


Q ss_pred             HHHHHHhhhccCCCCCccccc-CCcceEEecC-----CCHHHHHHHHHcccEEEeCC-------------C-eEEecc--
Q 012238          389 QKLFDSLSAKDKSGKDWSFIL-RQIGMFSFTG-----LNKAQSDNMTNKWHVYMTKD-------------G-RISLAG--  446 (467)
Q Consensus       389 ~~l~~~l~~~~g~~~~~~~~~-~~~g~f~~~~-----l~~~~~~~ll~~~gI~v~~g-------------g-Ris~~~--  446 (467)
                      +++.+.|+ +.|    +.+.. +..+.++|+.     ++.+.+.++++++||.+.++             + ||++..  
T Consensus       292 ~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~  366 (417)
T 3n0l_A          292 QVLANVLM-DRK----FKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALT  366 (417)
T ss_dssp             HHHHHHHH-HTT----CEEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHH
T ss_pred             HHHHHHHH-hCC----ceeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHh
Confidence            99999998 765    44443 2334455553     35667777777789998743             1 777542  


Q ss_pred             ---CChhhHHHHHHHHHHHHHh
Q 012238          447 ---LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       447 ---~~~~~i~~~~~~l~~~l~~  465 (467)
                         ++++++++++++|++++++
T Consensus       367 ~~~~~~~~i~~~~~~l~~~l~~  388 (417)
T 3n0l_A          367 ARGFKEKEMEIVSNYIADILDD  388 (417)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHT
T ss_pred             hCCCCHHHHHHHHHHHHHHHhc
Confidence               4679999999999999864

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.93  E-value=7.2e-25  Score=223.81  Aligned_cols=338  Identities=12%  Similarity=0.034  Sum_probs=219.2

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCC--cCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK--EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~--~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.|||..|...+.-|.  .+|.+.+++.+.+......  .+.+.....+|++.+++++..      ..++|++  ++||+
T Consensus        76 ~ylD~~s~~~~~~lGh--~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~~------~~~~v~~--~~sGs  145 (457)
T 3tfu_A           76 EVLDAMSSWWTAIHGH--GHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPA------GLDTVFF--SDSGS  145 (457)
T ss_dssp             EEEETTHHHHTCTTCB--TCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSST------TEEEEEE--ESSHH
T ss_pred             EEEECCCcHhhhccCC--CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCC------CcCEEEE--eCcHH
Confidence            7899998854233343  3788899888877542111  222455567788888887421      1568988  99999


Q ss_pred             hHHHHHHHHHHHh-----CCC-CEEEEcCCCCcchHHHHhhCC--------------CCeEEeeeecCCCCCCChhhHHH
Q 012238          162 GSLRLAAALIERY-----FPG-AKVLISSPTWGNHKNIFNDAR--------------VPWSEYRYYDPKTVGLDFEGMIA  221 (467)
Q Consensus       162 ~al~l~~~~l~~~-----~~g-d~Vlv~~P~y~~~~~~~~~~G--------------~~~~~v~~~~~~~~~~d~~~l~~  221 (467)
                      +|++++.++....     .+| ++|++.+|+|..+.......+              ..+..++.........|++.|++
T Consensus       146 eA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~  225 (457)
T 3tfu_A          146 VSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEA  225 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHH
Confidence            9999985443222     044 589999999977654444332              13333333211112248899999


Q ss_pred             HHHcCCCCcEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012238          222 DIKAAPGGSFILLHGC-AHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (467)
Q Consensus       222 ~l~~~~~~~~~i~i~~-p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (467)
                      .+++.+++++++++.+ ++||+|.++ +.+.+++|.++|++||+++|+||+|.+|...+.   .+.. ......++++  
T Consensus       226 ~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~---~~a~-~~~~~~pdii--  299 (457)
T 3tfu_A          226 QLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA---LFAA-DHAGVSPDIM--  299 (457)
T ss_dssp             HHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTH-HHHTCCCSEE--
T ss_pred             HHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccc---hhHh-HhcCCCceEE--
Confidence            9875435677788787 899999876 778899999999999999999999998865321   1122 1223334444  


Q ss_pred             ecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh-----ccCccCCCchHHHHHHHHHhCChhhHHHH
Q 012238          300 QSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL-----ARPMYSNPPVHGARIVANVVGNPALFDEW  373 (467)
Q Consensus       300 ~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~L~~~~~~~~~  373 (467)
                       +|||.++ .| +|+||++   +++++++.            +...     ....+.+.+.+++.++..+|+..      
T Consensus       300 -t~sK~l~-gG~~~lG~v~---~~~~i~~~------------~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~------  356 (457)
T 3tfu_A          300 -CVGKALT-GGYLSLAATL---CTADVAHT------------ISAGAAGALMHGPTFMANPLACAVSVASVELL------  356 (457)
T ss_dssp             -EECGGGG-TTSSCCEEEE---EEHHHHHH------------HHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHH------
T ss_pred             -EEChhhh-CCCcceEEEE---EcHHHHHH------------hhccCCCceeEecCCCcCHHHHHHHHHHHHHH------
Confidence             8899887 45 7999995   77877776            5311     12223456777777776665311      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceEEecCC----C-HHHHHHHHHcccEEEeCCC---eEEe
Q 012238          374 KAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKDG---RISL  444 (467)
Q Consensus       374 ~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~gg---Ris~  444 (467)
                      ++  +...++++++++++.+.|+ ++. .+. +....+.|. |+++.+    + .++.+.+++ +||.+.+.|   ||+.
T Consensus       357 ~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~-v~~vr~~G~-~~~i~l~~~~~~~~~~~~l~~-~Gv~v~~~~~~lRi~p  430 (457)
T 3tfu_A          357 LG--QDWRTRITELAAGLTAGLD-TARALPA-VTDVRVCGA-IGVIECDRPVDLAVATPAALD-RGVWLRPFRNLVYAMP  430 (457)
T ss_dssp             HT--SCHHHHHHHHHHHHHHHHG-GGGGSTT-EEEEEECSS-CEEEEESSCCCHHHHHHHHHH-TTEECCCBTTEEEECC
T ss_pred             hh--hHHHHHHHHHHHHHHHHHH-HHhcCCC-eeeeecCCe-EEEEEECCcccHHHHHHHHHH-CCeEEEecCCEEEEEC
Confidence            00  2345666667777777777 552 221 333344544 544432    2 345666666 599999987   7774


Q ss_pred             c-cCChhhHHHHHHHHHHHHHhc
Q 012238          445 A-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       445 ~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      . ..+++++++++++|+++++++
T Consensus       431 ~~~~t~eei~~~l~~L~~~l~~~  453 (457)
T 3tfu_A          431 PYICTPAEITQITSAMVEVARLV  453 (457)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHh
Confidence            3 238899999999999998865

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.93  E-value=1.5e-24  Score=215.53  Aligned_cols=312  Identities=13%  Similarity=0.054  Sum_probs=210.2

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (467)
                      +.+||+.|.|    .   ..+ +.+++.+.+...   .|.+..+..++|+++++++..        +++++  +.||++|
T Consensus         7 ~~~~l~~~~~----~---~~~-~~~~~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~~gt~a   65 (374)
T 3uwc_A            7 PYSYLERQFA----D---IEP-YLNDLREFIKTA---DFTLGAELEKFEKRFAALHNA--------PHAIG--VGTGTDA   65 (374)
T ss_dssp             CSCCHHHHTS----S---CHH-HHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHTTC--------SEEEE--ESCHHHH
T ss_pred             eeeccccCCC----C---chH-HHHHHHHHHHcC---CcccChhHHHHHHHHHHHhCC--------CcEEE--eCCHHHH
Confidence            5788888766    2   244 888888877553   477888999999999999643        26666  8999999


Q ss_pred             HHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          164 LRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       164 l~l~~~~l~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      +.++  +... +.+||+|+++.|+|..+...++..|++++.++.+  +++.+|++.+++.++   +++++++   |+|||
T Consensus        66 ~~~~--~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~---~~~~~v~---~~n~~  135 (374)
T 3uwc_A           66 LAMS--FKMLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAIT---DKTKAIM---PVHYT  135 (374)
T ss_dssp             HHHH--HHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCC---TTEEEEC---CBCGG
T ss_pred             HHHH--HHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCC---CCceEEE---EeCCc
Confidence            9987  4444 5699999999999999999999999999999984  567899999999886   4666666   89999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCc--cCcccCCCccceEEEec
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVC  320 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~~v~  320 (467)
                      |...+   +++|.++|+++|+++|+|++|..+..-+  ....      .. ...+++.|+|  |.++.+|. .|+++  +
T Consensus       136 G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~--~~~~------~~-~~d~~~~s~~~~K~l~~~g~-~g~~~--~  200 (374)
T 3uwc_A          136 GNIAD---MPALAKIAKKHNLHIVEDACQTILGRIN--DKFV------GS-WGQFACFSLHPLKNLNVWSD-AGVII--T  200 (374)
T ss_dssp             GCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEET--TEET------TS-SSSEEEEECSSSSSSCCSSC-CEEEE--E
T ss_pred             CCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeC--Ceec------cc-cccEEEEeCCCCCcCCccce-eEEEE--e
Confidence            99887   5577777999999999999987643211  0111      00 1246778866  99986576 77774  5


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhccC------------ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLARP------------MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  388 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r  388 (467)
                      .++++.+.            +......            .......+.+.+....+          +.+++..++.++++
T Consensus       201 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~----------~~~~~~~~~~~~~~  258 (374)
T 3uwc_A          201 HSDEYAEK------------LRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM----------NQLETITEKRRGIA  258 (374)
T ss_dssp             SCHHHHHH------------HHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG----------GGHHHHHHHHHHHH
T ss_pred             CCHHHHHH------------HHHHHhcCccccCccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence            67777665            3333211            01112333322222111          12445666777778


Q ss_pred             HHHHHHhhhccCCCCCcccc-cCCcceEEec-----CCCHHHHHHHHHcccEEEeCCC----------------------
Q 012238          389 QKLFDSLSAKDKSGKDWSFI-LRQIGMFSFT-----GLNKAQSDNMTNKWHVYMTKDG----------------------  440 (467)
Q Consensus       389 ~~l~~~l~~~~g~~~~~~~~-~~~~g~f~~~-----~l~~~~~~~ll~~~gI~v~~gg----------------------  440 (467)
                      +.+.+.|+ +++.  .+... .+.++.+.|.     ..+.+.+.+.+.++||.+.++.                      
T Consensus       259 ~~l~~~l~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (374)
T 3uwc_A          259 HLYDQSFV-DLSE--FIDVPVRREGVYHVFHIYVLRVKYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPM  335 (374)
T ss_dssp             HHHHHHTG-GGTT--TEECCCCCTTEECCCSSEEEEETTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHH
T ss_pred             HHHHHHhc-cCCC--eEEeccCCCCCceeeEEEEEEcCCHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCcc
Confidence            88888888 6640  01221 1222222221     1244444444555699887651                      


Q ss_pred             ---------eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          441 ---------RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 ---------Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                               ||++.. .+++++++++++|++++++.
T Consensus       336 ~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~  371 (374)
T 3uwc_A          336 AEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLEK  371 (374)
T ss_dssp             HHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence                     565443 47899999999999998753

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.93  E-value=6.6e-25  Score=223.78  Aligned_cols=341  Identities=11%  Similarity=-0.010  Sum_probs=199.4

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.||++.|.+...-|.  .+|.|.+++.+.+....  .|.+..+..+.+.++++++....+  ...++|++  |+||+
T Consensus        43 g~~ylD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~sGs  114 (448)
T 3dod_A           43 GKEYYDGFSSVWLNVHGH--RKKELDDAIKKQLGKIA--HSTLLGMTNVPATQLAETLIDISP--KKLTRVFY--SDSGA  114 (448)
T ss_dssp             SCEEEETTHHHHTCSSCB--SCHHHHHHHHHHHTTCS--CCCCSSSEEHHHHHHHHHHHHHSC--TTEEEEEE--ESSHH
T ss_pred             CCEEEECCcchhhccCCC--CCHHHHHHHHHHHHhcc--CccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCchH
Confidence            357899998865333343  36889999988876531  222333334445555555443322  12468998  99999


Q ss_pred             hHHHHHHHHHHHh--CC----CCEEEEcCCCCcchHHHHhhCCC-------------CeEEeeeecCCCCCC--------
Q 012238          162 GSLRLAAALIERY--FP----GAKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYDPKTVGL--------  214 (467)
Q Consensus       162 ~al~l~~~~l~~~--~~----gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~--------  214 (467)
                      +|+..+.++....  .+    +|+|++++|+|..+.......+.             .+..++.  +..+..        
T Consensus       115 eA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  192 (448)
T 3dod_A          115 EAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPI--PYVYRSESGDPDEC  192 (448)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECC--CCCTTSSSCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCC--CccccCCccchhhh
Confidence            9999985443322  04    49999999999876544333222             2233333  222222        


Q ss_pred             ---ChhhHHHHHHcCCCCcEEEEeCCCC-CCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012238          215 ---DFEGMIADIKAAPGGSFILLHGCAH-NPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (467)
Q Consensus       215 ---d~~~l~~~l~~~~~~~~~i~i~~p~-NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~  289 (467)
                         |++.|++.++..+.++.++++...+ |++|. +++.+.+++|.++|++||+++|+||+|.+|...+.   .... ..
T Consensus       193 ~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~---~~a~-~~  268 (448)
T 3dod_A          193 RDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK---MFAC-EH  268 (448)
T ss_dssp             HHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGG-GG
T ss_pred             hHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc---hhhh-hh
Confidence               4788999887322455666666666 88884 56788899999999999999999999998864321   1111 11


Q ss_pred             HhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHh-------hccCccCCCchHHHHHHH
Q 012238          290 ATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKR-------LARPMYSNPPVHGARIVA  361 (467)
Q Consensus       290 ~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~  361 (467)
                      .....+   +.+|||.++ .| +|+||++   +++++++.            +..       .....+.+.+.+++.++.
T Consensus       269 ~~~~~d---i~t~sK~l~-~G~~~ig~v~---~~~~~~~~------------~~~~~~~~~~~~~~~t~~~~~~~~aaa~  329 (448)
T 3dod_A          269 ENVQPD---LMAAGKGIT-GGYLPIAVTF---ATEDIYKA------------FYDDYENLKTFFHGHSYTGNQLGCAVAL  329 (448)
T ss_dssp             GTCCCS---EEEECGGGG-TTSSCCEEEE---EEHHHHHT------------TCSCGGGCCCCCCCCTTTTCHHHHHHHH
T ss_pred             cCCCCC---EEEeccccc-CCcCceEEEE---ECHHHHHH------------hhhccccCCcccccCCCCcCHHHHHHHH
Confidence            122223   336899998 59 5999995   77887776            543       222334466777777777


Q ss_pred             HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC--C--------------HHHH
Q 012238          362 NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--N--------------KAQS  425 (467)
Q Consensus       362 ~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~--------------~~~~  425 (467)
                      .+|+...  +  ++.++..++..+..++.+.+ +. .++.   +....+.| .|+|+.+  +              .++.
T Consensus       330 aal~~~~--~--~~~~~~~~~~~~~~~~~l~~-l~-~~~~---~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (448)
T 3dod_A          330 ENLALFE--S--ENIVEQVAEKSKKLHFLLQD-LH-ALPH---VGDIRQLG-FMCGAELVRSKETKEPYPADRRIGYKVS  399 (448)
T ss_dssp             HHHHHHH--H--TTHHHHHHHHHHHHHHHHHH-HT-TSTT---EEEEEEET-TEEEEEECSBTTTTBCCCGGGCHHHHHH
T ss_pred             HHHHHHh--c--ccHHHHHHHHHHHHHHHHHH-Hh-cCCC---eEEEEeee-EEEEEEEccCcccccccchhhHHHHHHH
Confidence            7664210  0  11123333333344444444 43 3321   22333344 4555422  1              3456


Q ss_pred             HHHHHcccEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          426 DNMTNKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       426 ~~ll~~~gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +.+++ +||.+.|+|   ||+.. ..+++++++++++|+++++++
T Consensus       400 ~~l~~-~Gv~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  443 (448)
T 3dod_A          400 LKMRE-LGMLTRPLGDVIAFLPPLASTAEELSEMVAIMKQAIHEV  443 (448)
T ss_dssp             HHHHH-TTEECCEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-CCcEEeccCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            66666 599999986   77433 238899999999999998754

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.93  E-value=2.3e-25  Score=220.05  Aligned_cols=286  Identities=12%  Similarity=-0.015  Sum_probs=185.5

Q ss_pred             CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCC--EEEEcCCCCcchHH---HH
Q 012238          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA--KVLISSPTWGNHKN---IF  194 (467)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd--~Vlv~~P~y~~~~~---~~  194 (467)
                      ..|.+..+..+|++++++++..       +.. ++  +.||++++.++  +.....+||  .|+++.++|..+..   ..
T Consensus        41 ~~y~~~~~~~~l~~~la~~~~~-------~~~-i~--~~~G~~a~~~a--l~~~~~~gd~~~vi~~~~~~~~~~~~~~~~  108 (357)
T 3lws_A           41 DQYGTGAIIEPFEQKFADVLGM-------DDA-VF--FPSGTMAQQVA--LRIWSDETDNRTVAYHPLCHLEIHEQDGLK  108 (357)
T ss_dssp             EETTEETTHHHHHHHHHHHHTC-------SEE-EE--ESCHHHHHHHH--HHHHHHHHTCCEEEECTTCHHHHSSTTHHH
T ss_pred             ccccCChHHHHHHHHHHHHhCC-------CcE-EE--ecCcHHHHHHH--HHHHhhcCCCcEEEecccceeeeeccchhh
Confidence            5687778899999999999643       223 34  47788888876  444456777  67766666443222   34


Q ss_pred             hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEeccCCC
Q 012238          195 NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (467)
Q Consensus       195 ~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT-G~~~~~~~l~~l~~~~~~~~~~li~Deay~~  273 (467)
                      ...|++++.++.   +++.+|++.+++..    . ++++++++||||| |.+++.+++++|+++|++||+++|+|++|..
T Consensus       109 ~~~g~~~~~v~~---~~~~~d~~~l~~~~----~-~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~  180 (357)
T 3lws_A          109 ELHPIETILVGA---ADRLMTLDEIKALP----D-IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLF  180 (357)
T ss_dssp             HHSSCEEEECSC---TTSCCCHHHHHTCC----S-CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHH
T ss_pred             hccCcEEEEecC---CCCCcCHHHHhcCc----C-cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhh
Confidence            566888888774   34579999988762    2 6788999999998 9999999999999999999999999999752


Q ss_pred             C--CCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccC-
Q 012238          274 F--ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYS-  350 (467)
Q Consensus       274 ~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  350 (467)
                      .  .+..  ..   ...+.... + +++.|+||.++.++.  ||++   +++++++.            +......... 
T Consensus       181 ~~~~~~~--~~---~~~~~~~~-d-~~~~s~sK~~~~~~g--g~~~---~~~~~~~~------------~~~~~~~~~~~  236 (357)
T 3lws_A          181 EMLPYYE--KT---AAEIAGLF-D-SIYISFYKGLGGIAG--AILA---GPAAFCQT------------ARIWKRRYGGD  236 (357)
T ss_dssp             HHHHHHT--CC---HHHHHTTS-S-EEEEESSSTTCCSSC--EEEE---ECHHHHHH------------HHHHHHHTTCC
T ss_pred             hhhhhcC--CC---hHHHHhcC-C-EEEEeccccCCCCce--EEEE---cCHHHHHH------------HHHHHHHhcCC
Confidence            1  1110  11   11222222 2 347899999943332  8874   78888877            4333222111 


Q ss_pred             -CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccc-ccCCcceEEecCC--C----H
Q 012238          351 -NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF-ILRQIGMFSFTGL--N----K  422 (467)
Q Consensus       351 -~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~-~~~~~g~f~~~~l--~----~  422 (467)
                       ..+...+.++...|.+      |   .+. .+++.++++++.+.|+ +++   ++++ ..+.+++|+|+.+  .    .
T Consensus       237 ~~~~~~~~~~~~~~l~~------~---~~~-~~~~~~~~~~l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~  302 (357)
T 3lws_A          237 LISLYPYIVSADYYYEL------R---KDR-MGQYYEQAKQLAEQFN-ALP---GVHTTPEVPVSNMFHLHFDGQAADIS  302 (357)
T ss_dssp             CSCCHHHHHHHHHHHHH------H---TTC-HHHHHHHHHHHHHHHH-TST---TEEEESSSCSSSEEEEEEESCHHHHH
T ss_pred             cccchHHHHHHHHHHHH------H---HHH-HHHHHHHHHHHHHHHH-hCC---CCeeccCCCcceEEEEEecCChHHHH
Confidence             1122222232222221      1   222 2345677888999998 762   1565 3456677888754  2    2


Q ss_pred             HHHHHHHHcccEEEeCC-----C----eEEecc----CChhhHHHHHHHHHHHH
Q 012238          423 AQSDNMTNKWHVYMTKD-----G----RISLAG----LSLAKCEYLADAIIDSY  463 (467)
Q Consensus       423 ~~~~~ll~~~gI~v~~g-----g----Ris~~~----~~~~~i~~~~~~l~~~l  463 (467)
                      +.+.+.+.++||.+.+|     |    |++++.    .+.+++++++++|.+++
T Consensus       303 ~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          303 PKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             HHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence            34445555679999987     2    787663    36788888888888765

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.93  E-value=1.1e-25  Score=222.30  Aligned_cols=302  Identities=13%  Similarity=-0.007  Sum_probs=193.7

Q ss_pred             chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCE--
Q 012238          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK--  179 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~--  179 (467)
                      ++|.+.+++.+.+.   ...|.+..+..++++++++++...        ..++  ++||++++.++  +...+.+||+  
T Consensus        27 ~~p~v~~ai~~~~~---~~~~~~~~~~~~l~~~la~~~~~~--------~~i~--~~~g~~a~~~a--~~~~~~~g~~~v   91 (359)
T 3pj0_A           27 VLTEALQNIDDNLE---SDIYGNGAVIEDFETKIAKILGKQ--------SAVF--FPSGTMAQQIA--LRIWADRKENRR   91 (359)
T ss_dssp             HHHHHTTTSCTTCB---CCBTTBSHHHHHHHHHHHHHHTCS--------EEEE--ESCHHHHHHHH--HHHHHHHHTCCE
T ss_pred             CCHHHHHHHHhhcc---cCcccCCHHHHHHHHHHHHHhCCC--------cEEE--eCCHHHHHHHH--HHHHHhcCCCcE
Confidence            36778877766432   256778889999999999996432        2244  57888999887  4444557776  


Q ss_pred             EEEcCCCCcchH---HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC-CCCCCHHHHHHHH
Q 012238          180 VLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT-GIDPTPEQWEKIA  255 (467)
Q Consensus       180 Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT-G~~~~~~~l~~l~  255 (467)
                      |+++.++|..+.   ......|++++.++.   +++.+|++.+++. .   ++++++++++||||| |.+++.+++++|+
T Consensus        92 vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~~~~~l~~l~  164 (359)
T 3pj0_A           92 VAYHPLSHLEIHEQDGLKELQQITPLLLGT---ANQLLTIDDIKSL-R---EPVSSVLIELPQREIGGQLPAFEELEKIS  164 (359)
T ss_dssp             EEECTTCHHHHSSTTHHHHHHCCEEEECSC---TTSCCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCCCHHHHHHHH
T ss_pred             EEEeccceeeehhcchHHHhcCceEEecCC---cCCCcCHHHHHhc-c---CCceEEEEEecccCCCcccCCHHHHHHHH
Confidence            555545543221   122456999888876   2468999999887 3   567889999999998 7999999999999


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHH
Q 012238          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVI  335 (467)
Q Consensus       256 ~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~  335 (467)
                      ++|++||++||+|++|..+........   ...+. ...+ +++.|+||.++.++.  ||+   ++++++++.       
T Consensus       165 ~~~~~~~~~li~D~a~~~~~~~~~~~~---~~~~~-~~~d-~~~~s~sK~~~~~~g--g~~---~~~~~l~~~-------  227 (359)
T 3pj0_A          165 EYCHEQGISLHLDGARLWEITPFYQKS---AEEIC-ALFD-SVYVSFYKGIGGIAG--AIL---AGNDDFVQE-------  227 (359)
T ss_dssp             HHHHHHTCEEEEEETTCGGGHHHHTCC---HHHHH-TTCS-EEEEESSSTTCCSSC--EEE---EECHHHHHH-------
T ss_pred             HHHHHcCCEEEEECcchhcchhhhCCC---HHHhh-ccCC-EEEEeccccCCCcce--EEE---ECCHHHHHH-------
Confidence            999999999999999765431100011   11222 2223 456699999886632  565   478888887       


Q ss_pred             HHHHHHHhhccCcc--CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCcccc-cCC
Q 012238          336 QVKSQLKRLARPMY--SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFI-LRQ  411 (467)
Q Consensus       336 ~~~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~-g~~~~~~~~-~~~  411 (467)
                           ++.......  .......+.++...+.         +.+ +..+++.++++.+.+.|+ ++ |    +++. .+.
T Consensus       228 -----~~~~~~~~~~~~~~~~~~~~a~~~~l~---------~~~-~~~~~~~~~~~~l~~~L~-~~~g----~~~~~~~~  287 (359)
T 3pj0_A          228 -----AKIWKRRYGGDLISLYPYILSADYYFE---------KRI-GKMAEYFEAAKGLAERFN-SCSG----VKTVPEVP  287 (359)
T ss_dssp             -----HHHHHHHTTCCCSCCHHHHHHHHHHHH---------HHG-GGHHHHHHHHHHHHHHHH-TSTT----EEEESSSC
T ss_pred             -----HHHHHHHhCCCcchhHHHHHHHHHHHH---------HHH-HHhHHHHHHHHHHHHHHh-hCCC----ceeeccCC
Confidence                 443222111  1112222222222221         112 333456778889999998 76 3    5553 344


Q ss_pred             cceEEecC--CC----HHHHHHHHHcccEEEeCCC----------eEEecc----CChhhHHHHHHHHHHH
Q 012238          412 IGMFSFTG--LN----KAQSDNMTNKWHVYMTKDG----------RISLAG----LSLAKCEYLADAIIDS  462 (467)
Q Consensus       412 ~g~f~~~~--l~----~~~~~~ll~~~gI~v~~gg----------Ris~~~----~~~~~i~~~~~~l~~~  462 (467)
                      ++.|+|+.  ..    .+.+.+.+.++||.+.+|.          |++++.    .+.+++++++++|.++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          288 VSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             SSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred             cceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence            55555553  32    3344455556799999982          777752    3678888888888765

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.93  E-value=6.4e-25  Score=224.03  Aligned_cols=341  Identities=12%  Similarity=0.017  Sum_probs=203.5

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.|||+.|.+...-+.  .+|.|.+++.+.+...  ..|....+..+.+.++++++....+.. ..++|++  |+||+
T Consensus        60 g~~ylD~~~~~~~~~lGh--~~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~--~~sGs  132 (451)
T 3oks_A           60 GNRLIDLGSGIAVTTVGN--SAPKVVEAVRSQVGDF--THTCFMVTPYEGYVAVCEQLNRLTPVR-GDKRSAL--FNSGS  132 (451)
T ss_dssp             SCEEEESSHHHHTCTTCT--TCHHHHHHHHHHHTTC--SCCTTTTSCCHHHHHHHHHHHHHSSCC-SSEEEEE--ESSHH
T ss_pred             CCEEEEcCCCccccccCC--CCHHHHHHHHHHHHhc--ccccCCccCCHHHHHHHHHHHHhCCcC-CCCEEEE--eCcHH
Confidence            357899998865333333  3688999998887553  223333333344444444443322111 1468988  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCC--------------CeEEeeeecC--CC-CCC--------Ch
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV--------------PWSEYRYYDP--KT-VGL--------DF  216 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~--------------~~~~v~~~~~--~~-~~~--------d~  216 (467)
                      +|++.+.++......+++|++..|+|..+.......+.              .+..++....  .. ++.        ++
T Consensus       133 eA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  212 (451)
T 3oks_A          133 EAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAA  212 (451)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHH
Confidence            99999844432223458999999999877654433221              3445544200  00 011        34


Q ss_pred             hhHHHHHHcC-CCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012238          217 EGMIADIKAA-PGGSFILLHGCAHNPTGI--DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (467)
Q Consensus       217 ~~l~~~l~~~-~~~~~~i~i~~p~NPTG~--~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (467)
                      +.+++.+++. ......++++.|.|++|.  .++.+.+++|.++|++||+++|+||+|.+|...+.   .+.. ......
T Consensus       213 ~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~-~~~~~~  288 (451)
T 3oks_A          213 KRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA---MFAC-EHEGID  288 (451)
T ss_dssp             HHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGG-GGGTCC
T ss_pred             HHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc---chhh-hhcCCC
Confidence            5555555431 123445555677777763  44677799999999999999999999998864321   1111 111222


Q ss_pred             CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHH
Q 012238          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEW  373 (467)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~  373 (467)
                      .+++   +|||.++. |+|+||++   +++++++.            +.......+.+.+.+++.++..+|+...     
T Consensus       289 pdi~---t~sK~l~~-G~~iG~v~---~~~~~~~~------------~~~~~~~~t~~~~~~~~aaa~aal~~~~-----  344 (451)
T 3oks_A          289 PDLI---VTAKGIAG-GLPLSAVT---GRAEIMDS------------PHVSGLGGTYGGNPIACAAALATIETIE-----  344 (451)
T ss_dssp             CSEE---EECGGGGT-TSSCEEEE---EEHHHHTC------------SCTTSBCCSSSSCHHHHHHHHHHHHHHH-----
T ss_pred             CCee---eehhhhhC-CcceEEEE---ECHHHHhh------------hcCCCcCCCCCCCHHHHHHHHHHHHHHh-----
Confidence            3333   88999985 99999995   67888776            5544444455677888888777764210     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh---ccCCCCCcccccCCcceEEecCC--------C----HHHHHHHHHcccEEEeC
Q 012238          374 KAEMEMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSFTGL--------N----KAQSDNMTNKWHVYMTK  438 (467)
Q Consensus       374 ~~~l~~~~~~~~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f~~~~l--------~----~~~~~~ll~~~gI~v~~  438 (467)
                       +  +...++++++++++.+.|++   .++.   +....+.|. |+|+.+        +    .++.+.+++ +||.+.+
T Consensus       345 -~--~~~~~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~  416 (451)
T 3oks_A          345 -S--EGLVARAQQIEKIMKDRLGRLQAEDDR---IGDVRGRGA-MIAMELVKAGTTEPDADLTKALCAGAHA-AGVIVLS  416 (451)
T ss_dssp             -H--TTHHHHHHHHHHHHHHHHHHHHHHCTT---EEEEEEETT-EEEEEEBSTTSCCBCHHHHHHHHHHHHH-TTEECEE
T ss_pred             -h--hhHHHHHHHHHHHHHHHHHHHHhhCCC---eEEEEEeeE-EEEEEEecCccCCCCHHHHHHHHHHHHh-CCcEEec
Confidence             0  12333334444444444430   3331   233344444 555432        1    234555555 5999988


Q ss_pred             CC------eEEecc-CChhhHHHHHHHHHHHHHh
Q 012238          439 DG------RISLAG-LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       439 gg------Ris~~~-~~~~~i~~~~~~l~~~l~~  465 (467)
                      +|      ||+++. .+++++++++++|++++++
T Consensus       417 ~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          417 CGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             ECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            64      776543 3889999999999999875

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.93  E-value=3.2e-24  Score=214.63  Aligned_cols=310  Identities=15%  Similarity=0.027  Sum_probs=203.1

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC-CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +++++|+.|.|    .   +++.+.+++.+.+..+   .|. +..+..++|+++++++...        ++++  +.||+
T Consensus        22 ~~~~~l~~~~p----~---~~~~~~~a~~~~~~~~---~~~~~~~~~~~l~~~la~~~~~~--------~~i~--~~~gt   81 (391)
T 3dr4_A           22 SDLPRISVAAP----R---LDGNERDYVLECMDTT---WISSVGRFIVEFEKAFADYCGVK--------HAIA--CNNGT   81 (391)
T ss_dssp             ------CCCCC----C---CCSSHHHHHHHHHHHT---CCSSCSHHHHHHHHHHHHHHTCS--------EEEE--ESSHH
T ss_pred             CCCceeccCCC----C---CCHHHHHHHHHHHHcC---CccCCChHHHHHHHHHHHHhCCC--------cEEE--eCCHH
Confidence            47889998876    2   2466778887777543   354 6789999999999997532        5666  79999


Q ss_pred             hHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          162 GSLRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       162 ~al~l~~~~l~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      +|+.++  +... +.+||+|+++.|+|..+...++..|++++.++++ ++++.+|++.+++.++   +++++++   ++|
T Consensus        82 ~al~~~--l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~---~~~~~v~---~~n  152 (391)
T 3dr4_A           82 TALHLA--LVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDND-PRTFNLDAAKLEALIT---PRTKAIM---PVH  152 (391)
T ss_dssp             HHHHHH--HHHHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCGGGSGGGCC---TTEEEEC---CBC
T ss_pred             HHHHHH--HHHcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEecC-ccccCcCHHHHHHhcC---CCceEEE---EEC
Confidence            999997  4444 5699999999999999999999999999999985 3567899999999886   5666666   578


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCC-CCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      |||...+.   ++|+++|+++|+++|+|++|.... +.+  ....      ..  ..+.+.||||..+++|.+.|+++  
T Consensus       153 ~tG~~~~~---~~i~~l~~~~~~~li~D~a~~~g~~~~~--~~~~------~~--~di~~~S~s~~K~l~~g~gg~~~--  217 (391)
T 3dr4_A          153 LYGQICDM---DPILEVARRHNLLVIEDAAEAVGATYRG--KKSG------SL--GDCATFSFFGNAIITTGEGGMIT--  217 (391)
T ss_dssp             GGGCCCCH---HHHHHHHHHTTCEEEEECTTCTTCEETT--EETT------SS--SSEEEEECBTTSSSCCBSCEEEE--
T ss_pred             CCCChhhH---HHHHHHHHHcCCEEEEECcccccceECC--eeec------cc--CCEEEEECCCCCcCCcCCeEEEE--
Confidence            99998765   567777999999999999987533 221  0000      01  12677887733333456788885  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHhhccCcc--------------CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKRLARPMY--------------SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  385 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~  385 (467)
                      +.++++.+.            +........              ...+.+...+....          .+.+++..++.+
T Consensus       218 ~~~~~~~~~------------~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~----------~~~~~~~~~~~~  275 (391)
T 3dr4_A          218 TNDDDLAAK------------MRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQ----------LERVDEHLAARE  275 (391)
T ss_dssp             ESCHHHHHH------------HHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHH----------HHTHHHHHHHHH
T ss_pred             ECCHHHHHH------------HHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHH----------HHHHHHHHHHHH
Confidence            577777666            332221110              12233322221111          122456667777


Q ss_pred             HHHHHHHHHhhhccCCCCCcccccC------CcceE-Eec------CCCHHHHHHHHHcccEEEeCCC------------
Q 012238          386 NVRQKLFDSLSAKDKSGKDWSFILR------QIGMF-SFT------GLNKAQSDNMTNKWHVYMTKDG------------  440 (467)
Q Consensus       386 ~~r~~l~~~l~~~~g~~~~~~~~~~------~~g~f-~~~------~l~~~~~~~ll~~~gI~v~~gg------------  440 (467)
                      ++++++.+.|+ +++    +.+..+      ..+++ +++      +.+.+.+.+.+.++||.+.++.            
T Consensus       276 ~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~  350 (391)
T 3dr4_A          276 RVVGWYEQKLA-RLG----NRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHL  350 (391)
T ss_dssp             HHHHHHHHHHG-GGT----TSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGG
T ss_pred             HHHHHHHHHhh-cCC----ccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHHCCCceeecCCccccChhhhhc
Confidence            78888889998 765    333332      12322 122      2345554444445699988661            


Q ss_pred             ----------------eEEec-cCChhhHHHHHHHHHHHH
Q 012238          441 ----------------RISLA-GLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       441 ----------------Ris~~-~~~~~~i~~~~~~l~~~l  463 (467)
                                      ||++. .++++++++++++|++++
T Consensus       351 ~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l  390 (391)
T 3dr4_A          351 ATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL  390 (391)
T ss_dssp             CCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred             CcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence                            55544 348899999999998764

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.93  E-value=5.7e-24  Score=218.27  Aligned_cols=343  Identities=10%  Similarity=0.020  Sum_probs=221.1

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.|||+.|.....-|.  .+|.|.+++.+.+.... ..| ...+..+.+.++++++....+.  ..++|++  ++||+
T Consensus        53 G~~ylD~~s~~~~~~lGh--~~p~v~~A~~~~l~~~~-~~~-~~~~~~~~~~~la~~l~~~~~~--~~~~v~~--~~sGs  124 (476)
T 3i5t_A           53 GRRLIDGPAGMWCAQVGY--GRREIVDAMAHQAMVLP-YAS-PWYMATSPAARLAEKIATLTPG--DLNRIFF--TTGGS  124 (476)
T ss_dssp             CCEEEETTHHHHTCTTCB--CCHHHHHHHHHHHHHCC-CCC-TTTCBCHHHHHHHHHHHTTSST--TCCEEEE--ESSHH
T ss_pred             CCEEEECCCchhhccCCC--CCHHHHHHHHHHHHhcc-Ccc-cCccCCHHHHHHHHHHHhcCCC--CcCEEEE--eCchH
Confidence            457899998865333333  37889999988876521 222 2245566777888887665432  2468988  99999


Q ss_pred             hHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHHhhCCCCe-------------EEeeeecC-CCCCCC------
Q 012238          162 GSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARVPW-------------SEYRYYDP-KTVGLD------  215 (467)
Q Consensus       162 ~al~l~~~~l~~~------~~gd~Vlv~~P~y~~~~~~~~~~G~~~-------------~~v~~~~~-~~~~~d------  215 (467)
                      +|+..+.++....      ..+++|++..|+|..+.......+...             ..++.... ..+..|      
T Consensus       125 eA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  204 (476)
T 3i5t_A          125 TAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLD  204 (476)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHH
Confidence            9999985554333      346799999999988765554433321             22221000 001122      


Q ss_pred             --hhhHHHHHHcC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh
Q 012238          216 --FEGMIADIKAA-PGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT  291 (467)
Q Consensus       216 --~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~  291 (467)
                        ++.|++.+++. ++++.++++.+++|++|. +++.+.+++|.++|++||+++|+||+|.+|...+   ..+.......
T Consensus       205 ~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G---~~~~~~~~~~  281 (476)
T 3i5t_A          205 DLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCG---EWFASEKVFG  281 (476)
T ss_dssp             HHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSCHHHHTTC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc---CceeeecccC
Confidence              77888888642 245678888888888886 8889999999999999999999999999886432   1122211222


Q ss_pred             cCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh-------ccCccCCCchHHHHHHHHH
Q 012238          292 RGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL-------ARPMYSNPPVHGARIVANV  363 (467)
Q Consensus       292 ~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~  363 (467)
                      ..++++   +|||.++ .| +|+|+++   +++++++.            +...       ....+.+.+.+++.++..+
T Consensus       282 v~pdi~---t~sK~l~-~G~~plg~v~---~~~~i~~~------------~~~~~~~~~~~~~~~t~~~np~a~aAa~aa  342 (476)
T 3i5t_A          282 VVPDII---TFAKGVT-SGYVPLGGLA---ISEAVLAR------------ISGENAKGSWFTNGYTYSNQPVACAAALAN  342 (476)
T ss_dssp             CCCSEE---EECGGGG-TTSSCCEEEE---ECHHHHHT------------TSGGGCTTCEECCCCTTTTCHHHHHHHHHH
T ss_pred             CCcchh---hhhhhhc-CCCcCeEEEE---ECHHHHHH------------HhcCCcccccccccCCCCcCHHHHHHHHHH
Confidence            223433   5789998 59 9999995   78888776            5432       2223446677777777766


Q ss_pred             hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceEEecCC--C--------------HHHHH
Q 012238          364 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL--N--------------KAQSD  426 (467)
Q Consensus       364 L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~~~~l--~--------------~~~~~  426 (467)
                      |+..      ++  +...++++++.+++.+.|+ +++ .|. +....+.|.|+ ++.+  +              .++.+
T Consensus       343 L~~~------~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~-v~~v~~~G~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~  411 (476)
T 3i5t_A          343 IELM------ER--EGIVDQAREMADYFAAALA-SLRDLPG-VAETRSVGLVG-CVQCLLDPTRADGTAEDKAFTLKIDE  411 (476)
T ss_dssp             HHHH------HH--TTHHHHHHHHHHHHHHHHH-TTTTSTT-EEEEEEETTEE-EEEECCC-----CCHHHHHHHHHHHH
T ss_pred             HHHH------Hh--HHHHHHHHHHHHHHHHHHH-HHhcCCC-eEEEEecCcee-EEEEecCccccccccchhHHHHHHHH
Confidence            6421      11  2455666667777777776 553 111 33445555543 3321  1              13345


Q ss_pred             HHHHcccEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          427 NMTNKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       427 ~ll~~~gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .+++ +||++.+.|   ||+.. ..+++++++++++|+++++++
T Consensus       412 ~l~~-~Gv~v~~~g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~  454 (476)
T 3i5t_A          412 RCFE-LGLIVRPLGDLCVISPPLIISRAQIDEMVAIMRQAITEV  454 (476)
T ss_dssp             HHHH-TTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-CCCEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            6665 599999876   77732 238899999999999998753

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.93  E-value=1.9e-25  Score=220.73  Aligned_cols=313  Identities=12%  Similarity=0.054  Sum_probs=207.6

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC---CCCcCCC---Cc----chHHHHHHHHHHHhCCCCcccccCcee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG---ENKEYLP---IE----GLAAFNKVTAELLFGADNSVLKEQRVA  153 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~---~~~~Y~~---~~----G~~~lr~aia~~l~~~~~~~~~~~~i~  153 (467)
                      .+++++.|.+       ++++.+++++.+.+...   ....|..   ..    ...++|+.++++++..     ++++|+
T Consensus         3 ~~~~~~~g~~-------~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-----~~~~v~   70 (360)
T 1w23_A            3 QVFNFNAGPS-------ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIP-----NDYQIL   70 (360)
T ss_dssp             CCEECCSSSC-------CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-----TTEEEE
T ss_pred             ceEeecCCCc-------CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCC-----CCceEE
Confidence            4677776643       23788999998876431   0011211   22    3567888888886432     256888


Q ss_pred             eeecCCc-hhHHHHHHHHHHHhCC---CCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHH-HHHcCCC
Q 012238          154 TVQGLSG-TGSLRLAAALIERYFP---GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA-DIKAAPG  228 (467)
Q Consensus       154 ~~~t~gg-t~al~l~~~~l~~~~~---gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~-~l~~~~~  228 (467)
                      +  |+|+ ++++.++  +...+.+   ||.|+++.++|.. ...++..| +++.+++++++ +.+|++.+++ .++   +
T Consensus        71 ~--~~g~gt~al~~~--~~~l~~~~~~g~~vi~~~~~~~~-~~~~~~~g-~~~~v~~~~~~-~~~d~~~l~~~~i~---~  140 (360)
T 1w23_A           71 F--LQGGASLQFTML--PMNLLTKGTIGNYVLTGSWSEKA-LKEAKLLG-ETHIAASTKAN-SYQSIPDFSEFQLN---E  140 (360)
T ss_dssp             E--ESSHHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHH-HHHHHTTS-EEEEEEECGGG-TSCSCCCGGGCCCC---T
T ss_pred             E--ECCcchHHHHHH--HHHhcCCCCcccEEEecchhHHH-HHHHHHhC-CeEEeeccccc-CcCCccchHhhccC---C
Confidence            8  8998 9999997  4445554   5566766666644 34467789 99999985322 3479999888 774   5


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc
Q 012238          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (467)
                      +++++++++|+||||.+++  +   |   +++||+++|+|++|..+...   .+   +    ...  .++++|+||.+++
T Consensus       141 ~~k~v~~~~~~nptG~~~~--~---i---~~~~~~~li~D~a~~~~~~~---~~---~----~~~--di~~~s~sK~~~~  200 (360)
T 1w23_A          141 NDAYLHITSNNTIYGTQYQ--N---F---PEINHAPLIADMSSDILSRP---LK---V----NQF--GMIYAGAQKNLGP  200 (360)
T ss_dssp             TEEEEEEESEETTTTEECS--S---C---CCCCSSCEEEECTTTTTSSC---CC---G----GGC--SEEEEETTTTTSC
T ss_pred             CCCEEEEeCCCCCcceecc--c---c---cccCCceEEEechhhcCCCC---cC---c----ccC--CEEEEEcccccCC
Confidence            7889999999999999987  2   3   23799999999998765422   11   1    111  3789999999997


Q ss_pred             CCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc------------cCccCCCchHHHHHHHHHhCChhhHHHHHH-
Q 012238          309 YAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA------------RPMYSNPPVHGARIVANVVGNPALFDEWKA-  375 (467)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-  375 (467)
                      +|  +||++   .++++++.            +....            ...+..++...+.++..++..  +    .+ 
T Consensus       201 ~G--~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~--~----~~~  257 (360)
T 1w23_A          201 SG--VTVVI---VKKDLLNT------------KVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDW--I----KDL  257 (360)
T ss_dssp             TT--CEEEE---EEHHHHCS------------CCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH--H----HHT
T ss_pred             CC--cEEEE---EcHHHHhh------------cccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHH--H----HHh
Confidence            77  89996   56666655            22211            111234455554555444421  1    11 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc-cC--CcceEEecCCC-----HHHHHHHHHcccEEEeCC----C--
Q 012238          376 -EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI-LR--QIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD----G--  440 (467)
Q Consensus       376 -~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~-~~--~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g----g--  440 (467)
                       .+++++++++++++++.+.|+ +++  +.+... .+  .+++++|+.+.     .++.++ +.++||.+.+|    +  
T Consensus       258 ~~~~~~~~~~~~~~~~l~~~L~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gi~~~~~~~~~~~i  333 (360)
T 1w23_A          258 GGAEAIAKQNEEKAKIIYDTID-ESN--GFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAK-AKEQGFVGLNGHRSVGGC  333 (360)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHH-TTT--TSSEESSCGGGBCSSEEEEECSSHHHHHHHHHH-HHHTTEESCBCCTTTCSE
T ss_pred             cCHHHHHHHHHHHHHHHHHHHH-Hcc--CcccccCCchhccCcEEEEEcCCCccHHHHHHH-HHHCCeeeecCCCCCCeE
Confidence             367788999999999999998 765  111322 12  34657777553     133444 44579999887    2  


Q ss_pred             eEEeccC-ChhhHHHHHHHHHHHHHh
Q 012238          441 RISLAGL-SLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       441 Ris~~~~-~~~~i~~~~~~l~~~l~~  465 (467)
                      ||+++.. +++++++++++|++++++
T Consensus       334 Ris~~~~~~~~~i~~~~~~l~~~~~~  359 (360)
T 1w23_A          334 RASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCHHHHHHHHHHHHHHHhh
Confidence            9999743 778999999999998765

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.93  E-value=2.1e-24  Score=220.10  Aligned_cols=340  Identities=11%  Similarity=-0.001  Sum_probs=214.9

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHH-H-HHHH---HHhcCCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVK-K-AENL---MLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~-~-a~~~---~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (467)
                      ...+||+.|.+-..-++  .+|.|. + ++.+   .+.....  ..| +.....++++.+++++..     ..+++|++ 
T Consensus        54 ~~ylD~~~~~~~~~lG~--~~p~v~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~la~~la~~~~~-----~~~~~v~~-  124 (449)
T 2cjg_A           54 RRYLDMFTFVASSALGM--NPPALVDDREFHAELMQAALNKPSNSDV-YSVAMARFVETFARVLGD-----PALPHLFF-  124 (449)
T ss_dssp             CEEEESSHHHHTCSSCB--SCHHHHTCHHHHHHHHHHHTCCCCTTTC-CCHHHHHHHHHHHHHHCC-----TTCCEEEE-
T ss_pred             cEEEEccCCccccCCCC--CCHHHHHHHHHHHHHHHHHhcCCCCccc-CCHHHHHHHHHHHHhcCC-----CCCCEEEE-
Confidence            46899988875222232  267788 7 8887   5544321  123 344467788888888641     12678999 


Q ss_pred             ecCCchhHHHHHHHHHHHh-C-----------CCCEEEEcCCCCcchHHHH-hhCC--------C-----CeEEeeeecC
Q 012238          156 QGLSGTGSLRLAAALIERY-F-----------PGAKVLISSPTWGNHKNIF-NDAR--------V-----PWSEYRYYDP  209 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~~~-~-----------~gd~Vlv~~P~y~~~~~~~-~~~G--------~-----~~~~v~~~~~  209 (467)
                       ++||++|++.+..+...+ .           +||+|++.+|+|..+.... ...|        .     .++.+|..++
T Consensus       125 -~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  203 (449)
T 2cjg_A          125 -VEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRP  203 (449)
T ss_dssp             -ESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCT
T ss_pred             -eCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCc
Confidence             999999999985443222 1           2899999999998765432 2222        1     3445554220


Q ss_pred             CCC--------CCChhhHHHHHHcCCCCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012238          210 KTV--------GLDFEGMIADIKAAPGGSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (467)
Q Consensus       210 ~~~--------~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG-~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~  280 (467)
                      ...        ..+++.+++.+++..+++++++++..+|||| ..++.+++++|.++|++||+++|+||+|.++...+. 
T Consensus       204 ~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~-  282 (449)
T 2cjg_A          204 GLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT-  282 (449)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-
T ss_pred             hhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCc-
Confidence            001        1355668888864335677777776679999 499999999999999999999999999998865421 


Q ss_pred             CChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHH-HHhhccCccCCCchHHHHH
Q 012238          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQ-LKRLARPMYSNPPVHGARI  359 (467)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~  359 (467)
                        .+.. .......+++   +|||.+     |+||++   .++++++.        +... +.......+.+.+.+++.+
T Consensus       283 --~~~~-~~~~~~~di~---t~sK~l-----~iG~~~---~~~~~~~~--------l~~~~~~~~~~~~t~~~n~~~~~a  340 (449)
T 2cjg_A          283 --AWAY-QQLDVAPDIV---AFGKKT-----QVCGVM---AGRRVDEV--------ADNVFAVPSRLNSTWGGNLTDMVR  340 (449)
T ss_dssp             --SSTH-HHHTCCCSEE---EECGGG-----SSEEEE---ECGGGGGS--------TTCTTTSTTSSCCSSSSCHHHHHH
T ss_pred             --ceee-cccCCCceEE---EecCcc-----cEEEEE---ECHHHhhh--------hhhcccCCcccccCCCCCHHHHHH
Confidence              1122 1222233433   789987     799996   56676664        1000 1111122234566777777


Q ss_pred             HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCcccccCCcceEEecCCC-----HHHHHHHHHcc
Q 012238          360 VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKW  432 (467)
Q Consensus       360 ~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~--g~~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~  432 (467)
                      +..+|+..      .+  +...++++++++++.+.|+ ++  +.+..+....+.|. |+++.+.     .++++++++ +
T Consensus       341 a~aal~~~------~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~l~~-~  409 (449)
T 2cjg_A          341 ARRILEVI------EA--EGLFERAVQHGKYLRARLD-ELAADFPAVVLDPRGRGL-MCAFSLPTTADRDELIRQLWQ-R  409 (449)
T ss_dssp             HHHHHHHH------HH--HTHHHHHHHHHHHHHHHHH-HHHHHSTTTSEEEEEETT-EEEEECSSHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHH------Hh--ccHHHHHHHHHHHHHHHHH-HHHhhCCCceeeEeeccE-EEEEEECChHHHHHHHHHHHH-C
Confidence            77666421      11  2355667777888888877 54  22211233445555 4445542     245667765 6


Q ss_pred             cEEEeCCC----eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          433 HVYMTKDG----RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       433 gI~v~~gg----Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ||.+.++|    ||+++. .+++++++++++|+++++++
T Consensus       410 Gv~v~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  448 (449)
T 2cjg_A          410 AVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALPVV  448 (449)
T ss_dssp             TEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999875    886542 38899999999999998865

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.93  E-value=3.3e-23  Score=209.22  Aligned_cols=195  Identities=18%  Similarity=0.072  Sum_probs=146.7

Q ss_pred             CCCCchHHHHHHHHHHHhcCCCCcCCCCcc----hHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH
Q 012238           98 LQPYVLDVVKKAENLMLERGENKEYLPIEG----LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER  173 (467)
Q Consensus        98 ~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G----~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~  173 (467)
                      ..|++++.+.+++.+.+..+....|.+..|    ..++++.+++++..       + ++++  +.+|++++.++  +...
T Consensus        10 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~-------~-~~i~--~~~gt~al~~~--~~~~   77 (418)
T 2c81_A           10 EWPQHSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGV-------P-YCVP--TTSGSTALMLA--LEAL   77 (418)
T ss_dssp             CSSCCCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTC-------S-EEEE--ESCHHHHHHHH--HHHT
T ss_pred             CCCCCCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCC-------C-cEEE--eCCHHHHHHHH--HHHc
Confidence            445557899999998886543234776667    67788888887532       2 3455  67789999997  4444


Q ss_pred             -hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHH
Q 012238          174 -YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWE  252 (467)
Q Consensus       174 -~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~  252 (467)
                       +.+||+|+++.|+|..+...++..|++++.++++ ++++.+|++.+++.++   ++++++++   +||||...+   ++
T Consensus        78 ~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~---~~~~~v~~---~~~~G~~~~---~~  147 (418)
T 2c81_A           78 GIGEGDEVIVPSLTWIATATAVLNVNALPVFVDVE-ADTYCIDPQLIKSAIT---DKTKAIIP---VHLFGSMAN---MD  147 (418)
T ss_dssp             TCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCHHHHGGGCC---TTEEEECC---BCCTTCCCC---HH
T ss_pred             CCCCcCEEEECCCccHhHHHHHHHcCCEEEEEecC-CCCCCcCHHHHHHhhC---CCCeEEEE---eCCcCCccc---HH
Confidence             5699999999999999999999999999999984 3467899999998886   46777765   469998755   56


Q ss_pred             HHHHHHHhcCCeeEEeccCCCCC-CCCCCCChhHHHHHHhcCCeEEEEecC--ccCcccCCCccceEEEecCCHHHHhh
Q 012238          253 KIADVIQEKNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       253 ~l~~~~~~~~~~li~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                      +|.++|+++|++||+|++|..+. ++.   ..  +   ....  .+.+.||  ||.++. | |+||++  +.++++++.
T Consensus       148 ~i~~~~~~~~~~li~D~a~~~~~~~~~---~~--~---~~~~--~~~~~s~s~~K~~~~-g-~~g~~~--~~~~~l~~~  212 (418)
T 2c81_A          148 EINEIAQEHNLFVIEDCAQSHGSVWNN---QR--A---GTIG--DIGAFSCQQGKVLTA-G-EGGIIV--TKNPRLFEL  212 (418)
T ss_dssp             HHHHHHHHTTCEEEEECTTCTTCEETT---EE--T---TSSS--SEEEEECCTTSSSCS-S-SCEEEE--ESCHHHHHH
T ss_pred             HHHHHHHHCCCEEEEECcccccCccCC---Ee--c---cccc--ceEEEeccCCcccCC-C-CeEEEE--ECCHHHHHH
Confidence            77788999999999999998876 432   11  1   0111  2667777  999996 8 999996  446777776

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.93  E-value=2.1e-24  Score=221.05  Aligned_cols=333  Identities=11%  Similarity=0.046  Sum_probs=206.3

Q ss_pred             CCCcEEecCccc-CCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAY-RTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~-~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +.++++|+.|.+ .|.....+ .+.+.+++.+.+..+. ..|.+..+..+||+++++++..        +++++  |+||
T Consensus        31 g~~~~~~~~~~~ylD~~~~~~-~~~v~~a~~~~l~~~~-~~y~~~~~~~~l~~~la~~~~~--------~~v~~--t~~g   98 (467)
T 2oqx_A           31 GMNPFLLDSEDVFIDLLTDSG-TGAVTQSMQAAMMRGD-EAYSGSRSYYALAESVKNIFGY--------QYTIP--THQG   98 (467)
T ss_dssp             TSCGGGSCGGGCSEECSCCSS-CSCCCHHHHHHTTSCC-CCSSSCHHHHHHHHHHHHHHCC--------SEEEE--EC--
T ss_pred             CCCceeccCCCeeEecccCCC-cHHHHHHHHHHhccCc-ceeccCchhHHHHHHHHHHhCc--------CcEEE--cCCc
Confidence            345677777743 23222222 2667777777765443 5788888999999999999742        47888  9999


Q ss_pred             hhHHHHHHHHHHHhCC-----C----CEEEEcCCCCcchHHHHhhCCCCeEEeee----ecC----CCCCCChhhHHHHH
Q 012238          161 TGSLRLAAALIERYFP-----G----AKVLISSPTWGNHKNIFNDARVPWSEYRY----YDP----KTVGLDFEGMIADI  223 (467)
Q Consensus       161 t~al~l~~~~l~~~~~-----g----d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~----~~~----~~~~~d~~~l~~~l  223 (467)
                      ++|+.++.  .....+     |    |+|++..+.|..+.......|..+.....    ...    .++.+|++.|++.+
T Consensus        99 t~A~~~al--~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i  176 (467)
T 2oqx_A           99 RGAEQIYI--PVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI  176 (467)
T ss_dssp             CCSHHHHH--HHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHH
T ss_pred             HHHHHHHH--HHHhccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHH
Confidence            99999983  333456     8    98888755555555666666766554321    001    34568999999999


Q ss_pred             HcCC-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEeccCCC----------CCCCCCCCChhHHHHHH-
Q 012238          224 KAAP-GGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQG----------FASGSLDNDASSVRLFA-  290 (467)
Q Consensus       224 ~~~~-~~~~~i~i~~p~NPT-G~~~~~~~l~~l~~~~~~~~~~li~Deay~~----------~~~~~~~~~~~~~~~~~-  290 (467)
                      ++.. ++++++++++||||| |.+++.+++++|+++|++||+++|+|+++..          ..+.+  .+.   ..+. 
T Consensus       177 ~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g--~~~---~~~~~  251 (467)
T 2oqx_A          177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKD--WTI---EQITR  251 (467)
T ss_dssp             HHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTT--SCH---HHHHH
T ss_pred             HhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccC--ccH---HHHhh
Confidence            7421 257788889999998 9999999999999999999999999954221          12221  111   1222 


Q ss_pred             ---hcCCeEEEEecCccCcccC-CCccceEEEecCCHH-HHhhhhhhhHHHHHHHHHhhc---cCc--cCCCchHHHHHH
Q 012238          291 ---TRGMELLVAQSYSKNLGLY-AERIGAMNVVCSSSD-LAARCCEVAVIQVKSQLKRLA---RPM--YSNPPVHGARIV  360 (467)
Q Consensus       291 ---~~~~~~i~~~S~SK~~~~~-G~RiG~~~~v~~~~~-~~~~~~~~~~~~~~~~l~~~~---~~~--~~~~~~~~~~~~  360 (467)
                         ... + +++.|+||.++++ |   ||++   .+++ +++.        +. .++...   ...  +...+..+..++
T Consensus       252 ~~~~~~-d-~~~~s~sK~~g~~~G---g~~~---~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~al  314 (467)
T 2oqx_A          252 ETYKYA-D-MLAMSAKKDAMVPMG---GLLC---MKDDSFFDV--------YT-ECRTLCVVQEGFPTYGGLEGGAMERL  314 (467)
T ss_dssp             HHGGGC-S-EEEEESSSTTCCSSC---EEEE---ECSGGGHHH--------HH-HHHHHHHHTTSSCCCCCCCHHHHHHH
T ss_pred             hhhccC-C-eEEEecccccCCCCc---eEEE---ecChhHHHH--------HH-HHHHhhhccCCcccccchhhhHHHHH
Confidence               222 3 4578999999876 3   5653   4444 3332        11 122211   111  112222221111


Q ss_pred             HHHhCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-------CH-H-----HHH
Q 012238          361 ANVVGNPALFDEWKAEM-EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-------NK-A-----QSD  426 (467)
Q Consensus       361 ~~~L~~~~~~~~~~~~l-~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-------~~-~-----~~~  426 (467)
                      ...+.         +.+ ++..++.+++++++.+.|+ +.+    +.+. +.+++++|+.+       +. +     +++
T Consensus       315 ~~~l~---------~~~~~~~~~~~~~~~~~l~~~L~-~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  379 (467)
T 2oqx_A          315 AVGLY---------DGMNLDWLAYRIAQVQYLVDGLE-EIG----VVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQALAC  379 (467)
T ss_dssp             HHHHH---------HTTCHHHHHHHHHHHHHHHHHHH-HTT----CCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHHHH
T ss_pred             HHhhH---------hhhhHHHHHHHHHHHHHHHHHHH-HCC----Ceee-cCCceEEEEechhhcccCCcccccHHHHHH
Confidence            11111         111 1233445677888999998 765    4555 66777777643       21 1     255


Q ss_pred             HHHHcccEEEeC-C------------------C--eEEecc--CChhhHHHHHHHHHHHHHh
Q 012238          427 NMTNKWHVYMTK-D------------------G--RISLAG--LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       427 ~ll~~~gI~v~~-g------------------g--Ris~~~--~~~~~i~~~~~~l~~~l~~  465 (467)
                      .+++++||.+.+ +                  +  ||+++.  .+++++++++++|++++++
T Consensus       380 ~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~  441 (467)
T 2oqx_A          380 ELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_dssp             HHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence            664667999876 2                  3  888873  4789999999999999865

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.92  E-value=1.3e-23  Score=210.89  Aligned_cols=286  Identities=15%  Similarity=0.135  Sum_probs=175.6

Q ss_pred             ecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC--CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHH
Q 012238           88 LGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (467)
Q Consensus        88 l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~  165 (467)
                      .+++.| +....++..+.+.+++....+....+.|.  +.....++++.+++++..       + +.++  +.+|++|+.
T Consensus        26 ~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~-------~-~~i~--~~sG~~a~~   94 (398)
T 1gc0_A           26 GALVPP-VYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGG-------E-AGLA--LASGMGAIT   94 (398)
T ss_dssp             TBSSCC-BCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTC-------S-EEEE--ESSHHHHHH
T ss_pred             CCcCCC-ccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCC-------C-cEEE--ECCHHHHHH
Confidence            344444 33333444556665554221111112333  567789999999999643       2 3444  567789999


Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          166 LAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       166 l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      ++  +...+.+||+|+++.|+|..+...+    +..|++++.++.       .|++.+++.++   ++++++++++|+||
T Consensus        95 ~~--l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~---~~~~~v~~~~~~np  162 (398)
T 1gc0_A           95 ST--LWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM-------ADLQALEAAMT---PATRVIYFESPANP  162 (398)
T ss_dssp             HH--HHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT-------TCHHHHHHHCC---TTEEEEEEESSCTT
T ss_pred             HH--HHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC-------CCHHHHHHhcC---CCCeEEEEECCCCC
Confidence            97  4445679999999999999887765    677888888765       38899999887   57889999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCcc-ceEEEec
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVC  320 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~  320 (467)
                      ||.+++   +++|+++|+++|+++|+|++|..+.+..      ++    . ...++++.|+||.++.+|+|+ ||++   
T Consensus       163 tG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~------~~----~-~~~d~~~~S~sK~~~~~~~~~~G~l~---  225 (398)
T 1gc0_A          163 NMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR------PL----E-LGADLVVHSATKYLSGHGDITAGIVV---  225 (398)
T ss_dssp             TCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC------GG----G-GTCSEEEEETTTTTTCSSSCCCEEEE---
T ss_pred             Cccccc---HHHHHHHHHHcCCEEEEECCCcccccCC------ch----h-hCceEEEECCccccCCCCCCeEEEEE---
Confidence            999997   5677888999999999999988655431      11    1 135688999999999999998 8875   


Q ss_pred             CCHHHHh-hhhhhhHHHHHHHHHhhccC-ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012238          321 SSSDLAA-RCCEVAVIQVKSQLKRLARP-MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK  398 (467)
Q Consensus       321 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~  398 (467)
                      .+++.++ .            ++..... .....+.+.+.++...++.          +....++..++.+.+.+.|+ +
T Consensus       226 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~l~~~L~-~  282 (398)
T 1gc0_A          226 GSQALVDRI------------RLQGLKDMTGAVLSPHDAALLMRGIKT----------LNLRMDRHCANAQVLAEFLA-R  282 (398)
T ss_dssp             ECHHHHHHH------------HHTHHHHHTCCCCCHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHH-T
T ss_pred             EChHHHHHH------------HHHHhhccCCCCCCHHHHHHHHhccch----------HHHHHHHHHHHHHHHHHHHh-c
Confidence            5655554 3            3322222 2234556666665555542          22334445555666666665 4


Q ss_pred             cCC------CC-----Cccccc----CCcceEEecCC--CHHHHHHHHHcccEEEe
Q 012238          399 DKS------GK-----DWSFIL----RQIGMFSFTGL--NKAQSDNMTNKWHVYMT  437 (467)
Q Consensus       399 ~g~------~~-----~~~~~~----~~~g~f~~~~l--~~~~~~~ll~~~gI~v~  437 (467)
                      .+.      |+     .+....    ..++++.| .+  ..+.+.+++++.+|.+.
T Consensus       283 ~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~l~~~~i~~~  337 (398)
T 1gc0_A          283 QPQVELIHYPGLASFPQYTLARQQMSQPGGMIAF-ELKGGIGAGRRFMNALQLFSR  337 (398)
T ss_dssp             CTTEEEEEEC----------------CCTTEEEE-EETTHHHHHHHHHHHCSSSEE
T ss_pred             CCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEE-EECCCHHHHHHHHHhCCCcee
Confidence            320      00     011121    24665554 33  23456677777776553

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.92  E-value=8.2e-24  Score=217.14  Aligned_cols=324  Identities=13%  Similarity=0.047  Sum_probs=213.7

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC---CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP---IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~---~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      ..+.|+ |.+    . .. .|.+.+++.+... . .+.|.+   ..|..++++.+++++....|.+.   .+++  ++||
T Consensus        67 ~~~~lg-~~~----~-~~-~p~v~~~~~~~~~-~-~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~---~~~~--~~gg  132 (474)
T 1wyu_B           67 TFYPLG-SCT----M-KY-NPKLHEEAARLFA-D-LHPYQDPRTAQGALRLMWELGEYLKALTGMDA---ITLE--PAAG  132 (474)
T ss_dssp             SCCCBT-TTC----C-CC-CCHHHHHHHHTTS-S-CCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE---EECC--CSSH
T ss_pred             Cccccc-ccc----c-cC-CHHHHHHHHHHHH-h-cCCCCchhhChHHHHHHHHHHHHHHHHHCCCc---eeec--ChHH
Confidence            467777 543    2 22 3445555544321 1 133443   56777777777777654434321   2445  8999


Q ss_pred             hhHHHHHHHHHHH--hCCCC-----EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEE
Q 012238          161 TGSLRLAAALIER--YFPGA-----KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL  233 (467)
Q Consensus       161 t~al~l~~~~l~~--~~~gd-----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i  233 (467)
                      ++++.++...+..  ..+||     +|+++.|+|+.+...++..|++++.++++  .++.+|++.|++.++   ++++++
T Consensus       133 t~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~--~~~~~d~~~L~~~i~---~~t~~v  207 (474)
T 1wyu_B          133 AHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSG--PEGEVDLEALKRELG---PHVAAL  207 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBC--TTSSBCHHHHHHHCS---TTEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCC--CCCCcCHHHHHHhhC---CCceEE
Confidence            9999875322221  24887     99999999999999999999999999984  457899999999997   567888


Q ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC-C--
Q 012238          234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY-A--  310 (467)
Q Consensus       234 ~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G--  310 (467)
                      ++++| ||||.+.  +++++|+++|+++|+++|+|++|.....+.  ...   .   .. ...+++.|++|.|+.| |  
T Consensus       208 ~~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g~--~~~---~---~~-g~di~~~s~~K~~~~p~g~g  275 (474)
T 1wyu_B          208 MLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIMGW--ARP---G---DM-GFDVVHLNLHKTFTVPHGGG  275 (474)
T ss_dssp             EECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTTT--CCH---H---HH-TCSEEECCTTTTTCCCCTTS
T ss_pred             EEECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhhccC--CCc---c---cC-CCcEEEEeCccccccCCCCC
Confidence            88988 6899873  357788999999999999999997665432  111   1   11 2457788999999877 5  


Q ss_pred             -CccceEEEecCCHHHHhhhhhhhHHHHHHHHH-hhc------------------cCccCCCchHHHHHHHHHhCChhhH
Q 012238          311 -ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLK-RLA------------------RPMYSNPPVHGARIVANVVGNPALF  370 (467)
Q Consensus       311 -~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~-~~~------------------~~~~~~~~~~~~~~~~~~L~~~~~~  370 (467)
                       .|+||++   .++++++.            +. ...                  +......+..++.++...+....  
T Consensus       276 G~~~G~~~---~~~~l~~~------------l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g--  338 (474)
T 1wyu_B          276 GPGSGPVG---VKAHLAPY------------LPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLG--  338 (474)
T ss_dssp             CCCCCCEE---ECGGGGGG------------CCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHH--
T ss_pred             CCCeEEEE---EcHHHHHh------------CCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHH--
Confidence             5999996   55666665            32 100                  00111244455555555443211  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceE-Eec----CCCH-HHHHHHHHcccEEEeC------
Q 012238          371 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF-SFT----GLNK-AQSDNMTNKWHVYMTK------  438 (467)
Q Consensus       371 ~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f-~~~----~l~~-~~~~~ll~~~gI~v~~------  438 (467)
                         .+.+++..+++.++++++.+.|+ ++|    +++..+...+. .|+    +.+. ++.++|++ +||.+..      
T Consensus       339 ---~~~l~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~Gi~~~~~~~~~~  409 (474)
T 1wyu_B          339 ---LEGLKKAAALAVLNARYLKELLK-EKG----YRVPYDGPSMHEFVAQPPEGFRALDLAKGLLE-LGFHPPTVYFPLI  409 (474)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHH-HTT----CBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHH-TTCCCCEESCSTT
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHh-hcC----cEecCCCCcceEEEEEcCCCCCHHHHHHHHHH-CCccccccccccc
Confidence               23467788889999999999998 765    34422322221 233    2344 44566665 4997521      


Q ss_pred             -CC--eEEeccC-ChhhHHHHHHHHHHHHH
Q 012238          439 -DG--RISLAGL-SLAKCEYLADAIIDSYH  464 (467)
Q Consensus       439 -gg--Ris~~~~-~~~~i~~~~~~l~~~l~  464 (467)
                       .+  ||+++.. +++++++++++|+++++
T Consensus       410 ~~~~lRis~~~~~t~e~id~~~~~L~~~~~  439 (474)
T 1wyu_B          410 VKEALMVEPTETEAKETLEAFAEAMGALLK  439 (474)
T ss_dssp             STTCEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred             cCCEEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence             12  9998753 67899999999998875

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.92  E-value=2.4e-23  Score=208.00  Aligned_cols=253  Identities=13%  Similarity=0.073  Sum_probs=172.3

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~  199 (467)
                      +..+..++++++++++..       ++.|++  ++| ++++.++  +...+.+||+|+++.|+|......    ++..|+
T Consensus        50 ~~~~~~~l~~~la~~~~~-------~~~i~~--~sG-t~a~~~~--~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~  117 (386)
T 1cs1_A           50 GNPTRDVVQRALAELEGG-------AGAVLT--NTG-MSAIHLV--TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY  117 (386)
T ss_dssp             CCHHHHHHHHHHHHHHTC-------SEEEEE--SSH-HHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSC
T ss_pred             CCccHHHHHHHHHHHhCC-------CcEEEe--CCH-HHHHHHH--HHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCC
Confidence            567889999999999753       245655  554 9999997  333467999999999999864443    467888


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++.       .|++.+++.++   ++++++++++|+||||.+++   +++|.++|+++|+++|+||+|..+.... 
T Consensus       118 ~~~~~~~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~-  183 (386)
T 1cs1_A          118 RVLFVDQ-------GDEQALRAALA---EKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN-  183 (386)
T ss_dssp             EEEEECT-------TCHHHHHHHHH---TCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred             EEEEeCC-------CCHHHHHHhhc---cCCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            8888765       38999999998   46678888999999999997   5677788999999999999998876531 


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccCCCcc-ceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                           +.    . ...++++.|+||.++.+|.|+ ||++  +.++++++.            +...........+...+.
T Consensus       184 -----~~----~-~~~di~~~s~sK~~~~~~~~~~G~~~--~~~~~l~~~------------l~~~~~~~~~~~~~~~~~  239 (386)
T 1cs1_A          184 -----PL----A-LGADLVLHSCTKYLNGHSDVVAGVVI--AKDPDVVTE------------LAWWANNIGVTGGAFDSY  239 (386)
T ss_dssp             -----GG----G-GTCSEEEEETTTTTTCSSCCCCEEEE--ESSHHHHHH------------HHHHHHHHTCBCCHHHHH
T ss_pred             -----cc----c-cCceEEEEcCcccccCCCCceeEEEE--eCcHHHHHH------------HHHHHHhcCCCCCHHHHH
Confidence                 11    1 235788999999999999998 8885  445577776            433333223335555555


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC------CC-----Ccccc----cCCcceEEec-CCCH
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS------GK-----DWSFI----LRQIGMFSFT-GLNK  422 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~------~~-----~~~~~----~~~~g~f~~~-~l~~  422 (467)
                      ++...++.          +....+++.++++.+.+.|+ +++.      +.     .+.+.    ...++++.|. .-..
T Consensus       240 ~~~~~l~~----------~~~~~~~~~~~~~~l~~~l~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (386)
T 1cs1_A          240 LLLRGLRT----------LVPRMELAQRNAQAIVKYLQ-TQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDE  308 (386)
T ss_dssp             HHHHHHTT----------HHHHHHHHHHHHHHHHHHHT-TCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCH
T ss_pred             HHHhcccH----------HHHHHHHHHHHHHHHHHHHh-cCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCH
Confidence            55444432          23344555666777777776 5421      11     01111    1235655443 2134


Q ss_pred             HHHHHHHHcccEEEe
Q 012238          423 AQSDNMTNKWHVYMT  437 (467)
Q Consensus       423 ~~~~~ll~~~gI~v~  437 (467)
                      +.+.+.++++||.+.
T Consensus       309 ~~~~~~l~~~gi~~~  323 (386)
T 1cs1_A          309 QTLRRFLGGLSLFTL  323 (386)
T ss_dssp             HHHHHHHHTCSSSEE
T ss_pred             HHHHHHHHhCCcceE
Confidence            556666777899886

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.92  E-value=2e-24  Score=213.80  Aligned_cols=312  Identities=12%  Similarity=0.042  Sum_probs=201.4

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--------CCcCCCCc--chHHHHHHHHHHHhCCCCcccccC-ce
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--------NKEYLPIE--GLAAFNKVTAELLFGADNSVLKEQ-RV  152 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--------~~~Y~~~~--G~~~lr~aia~~l~~~~~~~~~~~-~i  152 (467)
                      .+++++.|.      .+ +++.+++++.+.+....        ...|.+..  -..++|+.++++++    .  +++ ++
T Consensus         4 ~~~l~~~~~------~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g----~--~~~~~~   70 (362)
T 2c0r_A            4 RAYNFNAGP------AA-LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLG----N--PTGYKV   70 (362)
T ss_dssp             CCEECCSSS------CC-CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTT----C--CSSEEE
T ss_pred             ceeeccCCC------CC-CCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhC----C--CCCcEE
Confidence            467777663      23 38889999988764210        01121211  13455555555543    2  133 54


Q ss_pred             -eeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcc--hHHHHhhCCCCeEEeeeecCCCCC--CChhhHHHHHHcCC
Q 012238          153 -ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVG--LDFEGMIADIKAAP  227 (467)
Q Consensus       153 -~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~--~d~~~l~~~l~~~~  227 (467)
                       ++  |+|+++++.++  +...+.|||+|+++.+.+..  +...++..| +++.++++.+.+++  +|.+.++  ++   
T Consensus        71 i~~--t~g~t~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~---  140 (362)
T 2c0r_A           71 LFI--QGGASTQFAMI--PMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ---  140 (362)
T ss_dssp             EEE--SSHHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC---
T ss_pred             EEE--CCCchHHHHHH--HHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cC---
Confidence             56  89999999998  45557799999988776443  246677789 99999985222233  4666553  43   


Q ss_pred             CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       228 ~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      ++++++++++|+||||.+++  ++++|      +|+++|+|++|..+...   .+   +    ...  .+++.|+||.+|
T Consensus       141 ~~t~~v~~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~~~~---~~---~----~~~--d~~~~s~~K~~g  200 (362)
T 2c0r_A          141 DNAAYLHLTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDILSRP---FD---L----NQF--GLVYAGAQKNLG  200 (362)
T ss_dssp             TTEEEEEEESEETTTTEECS--SCCCC------TTSCEEEECTTTTTSSC---CC---G----GGC--SEEEEETTTTTC
T ss_pred             CCcCEEEEeCCcCccceecc--ccccc------CCCEEEEEChhhccCCc---cc---h----hHC--cEEEEecccccc
Confidence            67899999999999999754  34444      89999999998755421   11   1    111  477889999999


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh------------ccCccCCCchHHHHHHHHHhCChhhHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL------------ARPMYSNPPVHGARIVANVVGNPALFDEWKA  375 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  375 (467)
                      ++|  +||++   .++++++.            +...            ......+++...+.++..+|+..      .+
T Consensus       201 ~~G--~G~l~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~------~~  257 (362)
T 2c0r_A          201 PSG--VTVVI---VREDLVAE------------SPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWI------EE  257 (362)
T ss_dssp             CSS--CEEEE---EEGGGSSS------------CCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHH------HH
T ss_pred             CcC--cEEEE---EcHHHHhh------------ccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHH------HH
Confidence            888  89996   56666654            2210            11223356666777766665421      22


Q ss_pred             --HHHHHHHHHHHHHHHHHHHhhhccC-CCCCccccc---CCcceEEecCCC----H-HHHHHHHHcccEEEeCC----C
Q 012238          376 --EMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFIL---RQIGMFSFTGLN----K-AQSDNMTNKWHVYMTKD----G  440 (467)
Q Consensus       376 --~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~---~~~g~f~~~~l~----~-~~~~~ll~~~gI~v~~g----g  440 (467)
                        .+++++++++++++++.+.|+ ++| +   +....   ..++.++++.+.    . ++.+. |+++||.+.+|    +
T Consensus       258 ~~~~~~~~~~~~~~~~~l~~~L~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~~gi~~~~g~~~~~  332 (362)
T 2c0r_A          258 RGGLEGVQQANRKKASLIYDAID-QSGGF---YRGCVDVDSRSDMNITFRLASEELEKEFVKA-SEQEGFVGLKGHRSVG  332 (362)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHH-TSTTS---SEESSCGGGBCSSEEEEECSCHHHHHHHHHH-HHHTTEESCBCCTTTC
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHH-HcCCc---cccCCChHHcCCcEEEEEcCCcchHHHHHHH-HHHCCCeeccCCCCCC
Confidence              367888999999999999999 775 2   13221   112334444332    2 33444 55569988876    2


Q ss_pred             --eEEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238          441 --RISLAGL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 --Ris~~~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                        |||++.. +++++++++++|++++++.
T Consensus       333 ~iRis~~~~~~~e~i~~l~~~l~~~~~~~  361 (362)
T 2c0r_A          333 GLRASIYNAVPYESCEALVQFMEHFKRSR  361 (362)
T ss_dssp             SEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence              9999743 6799999999999988753

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.92  E-value=7.5e-24  Score=206.97  Aligned_cols=184  Identities=16%  Similarity=0.096  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCCeEEee
Q 012238          130 AFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYR  205 (467)
Q Consensus       130 ~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~  205 (467)
                      ++++++++++..       ++.+++   .+|++++.++  +...+.+||+|+++.|+|..+...+    +..|++++.++
T Consensus         2 ~l~~~la~~~g~-------~~~i~~---~sG~~a~~~~--~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   69 (331)
T 1pff_A            2 ALEGKIAKLEHA-------EACAAT---ASGMGAIAAS--VWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFID   69 (331)
T ss_dssp             HHHHHHHHHHTC-------SEEEEE---SSHHHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred             hHHHHHHHHhCC-------CeEEEe---CChHHHHHHH--HHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeC
Confidence            689999999743       234544   5569999997  3334679999999999999887665    45899888876


Q ss_pred             eecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh-cCCeeEEeccCCCCCCCCCCCChh
Q 012238          206 YYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE-KNHIPFFDVAYQGFASGSLDNDAS  284 (467)
Q Consensus       206 ~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~-~~~~li~Deay~~~~~~~~~~~~~  284 (467)
                      .       .|++.+++.++   ++++++++++|+||||.+++   +++|.++|++ +|+++|+|++|.......      
T Consensus        70 ~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~------  130 (331)
T 1pff_A           70 M-------AVPGNIEKHLK---PNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN------  130 (331)
T ss_dssp             T-------TSTTHHHHTCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC------
T ss_pred             C-------CCHHHHHHhhc---CCCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC------
Confidence            5       47888988886   57889999999999999997   5678888999 999999999987554321      


Q ss_pred             HHHHHHhcCCeEEEEecCccCcccCCCc-cceEEEecCCH-HHHhhhhhhhHHHHHHHHHhhccC-ccCCCchHHHHHHH
Q 012238          285 SVRLFATRGMELLVAQSYSKNLGLYAER-IGAMNVVCSSS-DLAARCCEVAVIQVKSQLKRLARP-MYSNPPVHGARIVA  361 (467)
Q Consensus       285 ~~~~~~~~~~~~i~~~S~SK~~~~~G~R-iG~~~~v~~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~  361 (467)
                      +.    + .+.++++.|+||.++.+|.| +||++   .++ ++++.            ++..... .....+...+.++.
T Consensus       131 ~~----~-~~~d~~~~s~~K~~~~~~~r~~G~~~---~~~~~~~~~------------l~~~~~~~~~~~~~~~~~~~~~  190 (331)
T 1pff_A          131 PL----D-LGVDIVVHSATKYINGHTDVVAGLVC---SRADIIAKV------------KSQGIKDITGAIISPHDAWLIT  190 (331)
T ss_dssp             GG----G-GTCSEEEEETTTTTSSSSSCCCEEEE---ECHHHHHHH------------HHTCCCCCCCCCCCHHHHHHHH
T ss_pred             hh----h-cCCcEEEEECccccCCCCCceEEEEE---eCcHHHHHH------------HHHHHHhhcCCCCCHHHHHHHH
Confidence            11    1 24678999999999999999 78985   555 77776            6665554 34456666665554


Q ss_pred             HHh
Q 012238          362 NVV  364 (467)
Q Consensus       362 ~~L  364 (467)
                      ..+
T Consensus       191 ~~l  193 (331)
T 1pff_A          191 RGT  193 (331)
T ss_dssp             HHH
T ss_pred             cCc
Confidence            443

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.92  E-value=2.7e-23  Score=206.25  Aligned_cols=301  Identities=10%  Similarity=0.007  Sum_probs=205.6

Q ss_pred             CchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH---hCCC
Q 012238          101 YVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER---YFPG  177 (467)
Q Consensus       101 ~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~---~~~g  177 (467)
                      ++++.+.+++.+.+...   .|.+.....++|+++++++..        +++++  |+||++++.++  +...   +.+|
T Consensus        10 ~~~~~v~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~~~--~~~~~~~~~~g   74 (375)
T 2fnu_A           10 CLDKEDKKAVLEVLNSK---QLTQGKRSLLFEEALCEFLGV--------KHALV--FNSATSALLTL--YRNFSEFSADR   74 (375)
T ss_dssp             CCCHHHHHHHHHHHTSS---CCSSSHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHSSCCCTTS
T ss_pred             CCCHHHHHHHHHHHHcC---cccCChHHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHhcccCCCC
Confidence            34888999999987543   244667889999999999742        27888  99999999998  4444   5689


Q ss_pred             CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 012238          178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV  257 (467)
Q Consensus       178 d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~  257 (467)
                      |+|+++.|+|..+...++..|++++.+++++  ++.+|++.+++.++   +++++++++++   ||.+.+.   ++|.++
T Consensus        75 d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~---~~~~~v~~~~~---tG~~~~l---~~i~~l  143 (375)
T 2fnu_A           75 NEIITTPISFVATANMLLESGYTPVFAGIKN--DGNIDELALEKLIN---ERTKAIVSVDY---AGKSVEV---ESVQKL  143 (375)
T ss_dssp             CEEEECSSSCTHHHHHHHHTTCEEEECCBCT--TSSBCGGGSGGGCC---TTEEEEEEECG---GGCCCCH---HHHHHH
T ss_pred             CEEEECCCccHhHHHHHHHCCCEEEEeccCC--CCCCCHHHHHhhcC---cCceEEEEeCC---cCCccCH---HHHHHH
Confidence            9999999999999999999999999999843  33789999998886   46777776554   9999875   577777


Q ss_pred             HHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCc--cCcccCCCccceEEEecCCHHHHhhhhhhhHH
Q 012238          258 IQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVCSSSDLAARCCEVAVI  335 (467)
Q Consensus       258 ~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~  335 (467)
                      |+++|+++|+|++|.......   .. .+    ... ..+++.|||  |.+++ |  +|+++ +..++++++.       
T Consensus       144 ~~~~~~~li~D~a~~~~~~~~---~~-~~----~~~-~~i~~~s~s~~K~~~~-g--~g~~~-~~~~~~~~~~-------  203 (375)
T 2fnu_A          144 CKKHSLSFLSDSSHALGSEYQ---NK-KV----GGF-ALASVFSFHAIKPITT-A--EGGAV-VTNDSELHEK-------  203 (375)
T ss_dssp             HHHHTCEEEEECTTCTTCEET---TE-ET----TSS-SSEEEEECCTTSSSCC-S--SCEEE-EESCHHHHHH-------
T ss_pred             HHHcCCEEEEECccccCCeEC---Ce-ec----ccc-CCeEEEeCCCCCCccc-c--CceEE-EeCCHHHHHH-------
Confidence            999999999999987544211   10 01    111 147788888  99985 7  78886 1245777776       


Q ss_pred             HHHHHHHhhccCc---------------c-CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          336 QVKSQLKRLARPM---------------Y-SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       336 ~~~~~l~~~~~~~---------------~-~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                           ++......               . ...+.+...++...+          +.+++..++++++++++.+.|+ ++
T Consensus       204 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----------~~~~~~~~~~~~~~~~l~~~L~-~~  267 (375)
T 2fnu_A          204 -----MKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQL----------KKAPFLMQKREEAALTYDRIFK-DN  267 (375)
T ss_dssp             -----HHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHH----------TTHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             -----HHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhh-cC
Confidence                 43332111               1 123333322222111          1245677788888999999998 75


Q ss_pred             CCCCCcccccC----Ccc-eEEec--C---C-CHHHHHHHHHcccEEEeC----C-----------------------C-
Q 012238          400 KSGKDWSFILR----QIG-MFSFT--G---L-NKAQSDNMTNKWHVYMTK----D-----------------------G-  440 (467)
Q Consensus       400 g~~~~~~~~~~----~~g-~f~~~--~---l-~~~~~~~ll~~~gI~v~~----g-----------------------g-  440 (467)
                      .  + +++..+    .++ ++.|+  .   . +.+.+.+.|.++||.+..    +                       + 
T Consensus       268 ~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (375)
T 2fnu_A          268 P--Y-FTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAE  344 (375)
T ss_dssp             S--S-EEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHE
T ss_pred             C--C-ccccCCCCCCCcceEEEEEEeCccccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCE
Confidence            2  1 454443    123 22233  2   2 334444444556999872    1                       2 


Q ss_pred             -eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          441 -RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 -Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                       ||+++. .+++++++++++|+++++++
T Consensus       345 lRi~~~~~~t~~~i~~~~~~l~~~~~~~  372 (375)
T 2fnu_A          345 ISLPCHANLNLESVQNIAHSVLKTFESF  372 (375)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence             888764 37799999999999998765

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.92  E-value=4.2e-24  Score=219.64  Aligned_cols=329  Identities=12%  Similarity=0.098  Sum_probs=209.4

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcC------CCCcchHHHHHHHHHHHhCCCCccccc--Cceeee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY------LPIEGLAAFNKVTAELLFGADNSVLKE--QRVATV  155 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y------~~~~G~~~lr~aia~~l~~~~~~~~~~--~~i~~~  155 (467)
                      +.|+|..|++      + +++.|++++.+.+......+|      ....+..++++.+.+++....|...+.  .+|++ 
T Consensus        45 ~~i~L~a~e~------~-~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~-  116 (483)
T 1rv3_A           45 VGLELIASEN------F-ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQP-  116 (483)
T ss_dssp             SSEECCTTCC------C-CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCC-
T ss_pred             cCeEEEcCCC------C-CCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEE-
Confidence            6899987653      2 378999999888754332233      334456677755555544444433211  24666 


Q ss_pred             ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH--------HhhCCCCeEEeeee-cCCCCCCChhhHHHHHHcC
Q 012238          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI--------FNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAA  226 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~--------~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~  226 (467)
                       ++|+ +++.++  +.+.+.|||+|++++|.|..+...        ++..|..++.+++. +++++.+|++.+++.+++ 
T Consensus       117 -~sGs-~an~~~--~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~-  191 (483)
T 1rv3_A          117 -YSGS-PANFAV--YTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARL-  191 (483)
T ss_dssp             -SSHH-HHHHHH--HHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH-
T ss_pred             -CCcH-HHHHHH--HHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhh-
Confidence             6666 777775  455678999999999988776532        23334224555542 235688999999999974 


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCccC
Q 012238          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (467)
Q Consensus       227 ~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (467)
                       .++++|++ +++||+ .+++   +++|.++|+++|+++|+|++|. ++.+.+.  ...++    .  ...+++.|++|+
T Consensus       192 -~~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~--~~~p~----~--~~div~~s~~K~  257 (483)
T 1rv3_A          192 -FHPKLIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGV--VPSPF----E--HCHVVTTTTHKT  257 (483)
T ss_dssp             -HCCSEEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTS--SCCGG----G--TCSEEEEESSGG
T ss_pred             -cCCcEEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCC--CCCCC----C--CCcEEEecCccc
Confidence             35567777 889998 7777   5577888999999999999965 3332211  11111    1  234789999998


Q ss_pred             cccCCCccceEEEecCCH--------------HHHhhhhhhhHHHHHHHHHhhccCc-cCCCchHHHHHHHHHhCChhhH
Q 012238          306 LGLYAERIGAMNVVCSSS--------------DLAARCCEVAVIQVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALF  370 (467)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~  370 (467)
                      +  +|+|.||++  +.++              ++.+.            +.....+. ..+++.....+...++...   
T Consensus       258 l--~GprgG~i~--~~~~~~~~~~~~g~~~~y~~~~~------------~~~~~~~~~~g~~~~~~iaal~~Al~~~---  318 (483)
T 1rv3_A          258 L--RGCRAGMIF--YRRGVRSVDPKTGKEILYNLESL------------INSAVFPGLQGGPHNHAIAGVAVALKQA---  318 (483)
T ss_dssp             G--CCCSCEEEE--EECSBCC-------CCBCCHHHH------------HHHHHTTTTCCSCCHHHHHHHHHHHHHH---
T ss_pred             C--CCCCceEEE--EcchhhhhccccCcchhhHHHHH------------hhhhcCCcccCCccHHHHHHHHHHHHHH---
Confidence            6  688999996  3432              12222            32222222 2233333333333333210   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC-cceEEec-----CCCHHHHHHHHHcccEEEe----CC-
Q 012238          371 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ-IGMFSFT-----GLNKAQSDNMTNKWHVYMT----KD-  439 (467)
Q Consensus       371 ~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~-~g~f~~~-----~l~~~~~~~ll~~~gI~v~----~g-  439 (467)
                        ....++++.++++++++++.+.|. +.|    +++..+. ..++.|+     +++.+.+.++|++.||.+.    || 
T Consensus       319 --~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~  391 (483)
T 1rv3_A          319 --MTPEFKEYQRQVVANCRALSAALV-ELG----YKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGD  391 (483)
T ss_dssp             --TSHHHHHHHHHHHHHHHHHHHHHH-HTT----CEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSC
T ss_pred             --hChhHHHHHHHHHHHHHHHHHHHH-hcC----CEeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCC
Confidence              012356788889999999999999 776    4655543 2345554     3466667777778899998    65 


Q ss_pred             ------C--eEEeccC-C----hhhHHHHHHHHHHHHHh
Q 012238          440 ------G--RISLAGL-S----LAKCEYLADAIIDSYHN  465 (467)
Q Consensus       440 ------g--Ris~~~~-~----~~~i~~~~~~l~~~l~~  465 (467)
                            +  ||+++.. +    ++++++++++|.++++.
T Consensus       392 ~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          392 KSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             SCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence                  1  9998743 2    79999999999998764

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.92  E-value=1.2e-23  Score=210.38  Aligned_cols=277  Identities=13%  Similarity=0.070  Sum_probs=188.2

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~  199 (467)
                      +.....++++++++++..       + ++++  +.+|++|+.++  +...+.+||+|+++.|+|..+...    ++..|+
T Consensus        57 ~~~~~~~l~~~la~~~g~-------~-~~i~--~~sG~~ai~~~--~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~  124 (389)
T 3acz_A           57 GNPTVEQFEEMVCSIEGA-------A-GSAA--FGSGMGAISSS--TLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGI  124 (389)
T ss_dssp             CCHHHHHHHHHHHHHHTC-------S-EEEE--ESSHHHHHHHH--HTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred             CChHHHHHHHHHHHHhCC-------C-eEEE--eCCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCC
Confidence            456788999999999643       2 4555  67788999987  333467999999999999976555    577899


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++.       .|++.+++.++   ++++++++++|+||||.+++   +++|+++|+++|+++|+|++|..+.... 
T Consensus       125 ~~~~v~~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~~-  190 (389)
T 3acz_A          125 EVDLIDT-------SDVEKVKAAWK---PNTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFLK-  190 (389)
T ss_dssp             EEEEECT-------TCHHHHHHTCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC-
T ss_pred             EEEEECC-------CCHHHHHHhcC---CCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccccC-
Confidence            9988876       48899998886   57889999999999999997   5677888999999999999998765431 


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccCCCcc-ceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                           ++    + ...++++.|+||.++.+|.|+ ||++  +.++++++.            +...........+...+.
T Consensus       191 -----~~----~-~~~di~~~S~sK~~~~~~~~~~G~v~--~~~~~~~~~------------l~~~~~~~g~~~~~~~~~  246 (389)
T 3acz_A          191 -----PL----E-LGADIALHSVSKYINGHGDVIGGVSS--AKTAEDIAT------------IKFYRKDAGSLMAPMDAF  246 (389)
T ss_dssp             -----GG----G-TTCSEEEEETTTTTTCSSCCCCEEEE--ESSHHHHHH------------HHHHHHHHCCCCCHHHHH
T ss_pred             -----cc----c-cCCeEEEECChhhccCCCCceeEEEE--ECcHHHHHH------------HHHHHHhcCCCCCHHHHH
Confidence                 11    1 235688999999999999999 9885  343377776            443333223345555656


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC------CCC-----Cccccc----CCcceEEecCC-CH
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK------SGK-----DWSFIL----RQIGMFSFTGL-NK  422 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g------~~~-----~~~~~~----~~~g~f~~~~l-~~  422 (467)
                      ++...|...          ....++..++...+.+.++ +.+      .++     .+.+..    ..++++.+. + ..
T Consensus       247 ~~~~~l~~l----------~~r~~~~~~~~~~l~~~l~-~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~-l~~~  314 (389)
T 3acz_A          247 LCARGMKTL----------PIRMQIHMENGLKVAKFLE-QHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFE-MKSF  314 (389)
T ss_dssp             HHHHHHTTH----------HHHHHHHHHHHHHHHHHHH-HCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE-ESSH
T ss_pred             HHHcCccHH----------HHHHHHHHHHHHHHHHHHH-cCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEE-ECCH
Confidence            555555432          1222333344444555554 321      010     011111    235555432 2 25


Q ss_pred             HHHHHHHHcccEEEeC---C-----------------------------C--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          423 AQSDNMTNKWHVYMTK---D-----------------------------G--RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       423 ~~~~~ll~~~gI~v~~---g-----------------------------g--Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                      +.+.+++++.||.+..   |                             +  |||++.   ++.+.+++.|.++++.
T Consensus       315 ~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---~~~~~li~~l~~al~~  388 (389)
T 3acz_A          315 EAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI---ENVDDIIADLKQALEL  388 (389)
T ss_dssp             HHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence            5677777777876644   2                             3  898886   4788888888888764

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.92  E-value=1.3e-23  Score=211.15  Aligned_cols=192  Identities=14%  Similarity=0.071  Sum_probs=144.2

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~  199 (467)
                      +..+..+||+++++++..       ++.|++   .+|++|+.++  +. .+.+||+|+++.|+|......    ++..|+
T Consensus        65 ~~p~~~~l~~~la~~~g~-------~~~i~~---~sG~~ai~~~--~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~  131 (403)
T 3cog_A           65 GNPTRNCLEKAVAALDGA-------KYCLAF---ASGLAATVTI--TH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGL  131 (403)
T ss_dssp             -CHHHHHHHHHHHHHHTC-------SEEEEE---SCHHHHHHHH--HT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTC
T ss_pred             CCchHHHHHHHHHHHhCC-------CcEEEE---CCHHHHHHHH--HH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCC
Confidence            567889999999999754       245655   4557899887  33 467999999999999874443    467899


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC-CeeEEeccCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN-HIPFFDVAYQGFASGS  278 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~-~~li~Deay~~~~~~~  278 (467)
                      +++.++..       |++.+++.++   ++++++++++|+||||.+++   +++|+++|+++| +++|+|++|..+.+..
T Consensus       132 ~v~~v~~~-------d~~~l~~~i~---~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~~  198 (403)
T 3cog_A          132 KISFVDCS-------KIKLLEAAIT---PETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQR  198 (403)
T ss_dssp             EEEEECTT-------SHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTCC
T ss_pred             EEEEECCC-------CHHHHHHhcC---cCCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccCC
Confidence            99888762       8899999887   57889999999999999997   567788899999 9999999998876431


Q ss_pred             CCCChhHHHHHHhcCCeEEEEecCccCcccCCC-ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHH
Q 012238          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGA  357 (467)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  357 (467)
                            ++    + ...++++.|+||.++.+|. |+||++  +.++++++.            +...........+.+.+
T Consensus       199 ------~~----~-~~~div~~S~sK~~~g~~~~~~G~v~--~~~~~l~~~------------l~~~~~~~g~~~~~~~~  253 (403)
T 3cog_A          199 ------PL----A-LGADISMYSATKYMNGHSDVVMGLVS--VNCESLHNR------------LRFLQNSLGAVPSPIDC  253 (403)
T ss_dssp             ------TT----T-TTCSEEEEETTTTTTCSSCCCCEEEE--ECCHHHHHH------------HHHHHHHHCCCCCHHHH
T ss_pred             ------cc----c-cCCeEEEEcChhhccCCCCCeEEEEE--ECcHHHHHH------------HHHHHHhcCCCCCHHHH
Confidence                  11    1 1357899999999997775 799996  446777776            44433333344566677


Q ss_pred             HHHHHHhCC
Q 012238          358 RIVANVVGN  366 (467)
Q Consensus       358 ~~~~~~L~~  366 (467)
                      .++...|..
T Consensus       254 ~~~~~~l~~  262 (403)
T 3cog_A          254 YLCNRGLKT  262 (403)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHhhhhH
Confidence            776666654

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.92  E-value=1.1e-23  Score=212.62  Aligned_cols=322  Identities=15%  Similarity=0.146  Sum_probs=190.9

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC-----CCcch----HH-HHHHHHHHHhCCCCcccccCcee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-----PIEGL----AA-FNKVTAELLFGADNSVLKEQRVA  153 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~-----~~~G~----~~-lr~aia~~l~~~~~~~~~~~~i~  153 (467)
                      +.++|..+..      +. ++.+.+++.+.+.......|.     +....    .+ .++.+++++...      . ..+
T Consensus        33 ~~i~l~~~~~------~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~-~~v   98 (425)
T 3ecd_A           33 SQVELIASEN------IV-SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAG------H-ANV   98 (425)
T ss_dssp             HSEECCTTCC------CC-CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCS------E-EEC
T ss_pred             cceeeecccC------CC-CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCC------C-cee
Confidence            5688876543      22 788999988877432212221     11111    12 224455554321      2 223


Q ss_pred             eeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcc---hHHHHhhCCCCeE--EeeeecCCCCCCChhhHHHHHHcCCC
Q 012238          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN---HKNIFNDARVPWS--EYRYYDPKTVGLDFEGMIADIKAAPG  228 (467)
Q Consensus       154 ~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~---~~~~~~~~G~~~~--~v~~~~~~~~~~d~~~l~~~l~~~~~  228 (467)
                      +  +.||++++.++  +...+.+||+|+++.|+|..   +.......|..+.  .++.+ ++++.+|++.+++.+++  .
T Consensus        99 ~--~~~Gs~a~~~a--l~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~d~~~l~~~i~~--~  171 (425)
T 3ecd_A           99 Q--PHSGAQANGAV--MLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVS-RDTMLIDYDQVEALAQQ--H  171 (425)
T ss_dssp             C--CSSHHHHHHHH--HHHHCCTTCEEEEECC------------------CEEEEECCC-TTTSSCCHHHHHHHHHH--H
T ss_pred             e--cCchHHHHHHH--HHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCC-cccCccCHHHHHHHHhh--c
Confidence            4  68889999887  44457799999999999987   3333334555444  44442 34578999999999974  3


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccC-CCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY-QGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      +++++++++|+||+.     .++++|.++|++||++||+||+| .++.+.+.  .....    ..  ..+++.|+||.+ 
T Consensus       172 ~~~~v~~~~~~~~~~-----~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~--~~~~~----~~--~di~~~s~sK~l-  237 (425)
T 3ecd_A          172 KPSLIIAGFSAYPRK-----LDFARFRAIADSVGAKLMVDMAHIAGVIAAGR--HANPV----EH--AHVVTSTTHKTL-  237 (425)
T ss_dssp             CCSEEEEECSCCCSC-----CCHHHHHHHHHHHTCEEEEECGGGHHHHHTTS--SCCGG----GT--CSEEEEESSGGG-
T ss_pred             CCcEEEEccccCCCc-----CCHHHHHHHHHHcCCEEEEECcChHhhhhccc--ccCch----hc--CcEEEecCCccc-
Confidence            456778888999753     34578888899999999999994 33332211  11111    11  238899999987 


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCcc-CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMY-SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  386 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~  386 (467)
                       +|+|+||++  +.++++.+.            +........ .+++...+.++..++..     ...+++++..+++++
T Consensus       238 -~g~~~g~~~--~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~a~~~a~~~-----~~~~~~~~~~~~~~~  297 (425)
T 3ecd_A          238 -RGPRGGFVL--TNDEEIAKK------------INSAVFPGLQGGPLMHVIAGKAVAFGE-----ALTDDFKTYIDRVLA  297 (425)
T ss_dssp             -CCCSCEEEE--ESCHHHHHH------------HHHHHC-----CCCHHHHHHHHHHHHH-----HTSHHHHHHHHHHHH
T ss_pred             -CCCCcEEEE--eCCHHHHHH------------HHhhhCccccCCccHHHHHHHHHHHHH-----HHHHhHHHHHHHHHH
Confidence             678999996  454666665            433322222 23333332222222211     112335678888899


Q ss_pred             HHHHHHHHhhhccCCCCCcccccC-CcceEEecC-----CCHHHHHHHHHcccEEEe----CC--------C--eEEecc
Q 012238          387 VRQKLFDSLSAKDKSGKDWSFILR-QIGMFSFTG-----LNKAQSDNMTNKWHVYMT----KD--------G--RISLAG  446 (467)
Q Consensus       387 ~r~~l~~~l~~~~g~~~~~~~~~~-~~g~f~~~~-----l~~~~~~~ll~~~gI~v~----~g--------g--Ris~~~  446 (467)
                      +++++.+.|+ +.|    +.+..+ .+++++|+.     .+.+.+.++++++||.+.    |+        +  ||++..
T Consensus       298 ~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~  372 (425)
T 3ecd_A          298 NAQALGDVLK-AGG----VDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPA  372 (425)
T ss_dssp             HHHHHHHHHH-HTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHH
T ss_pred             HHHHHHHHHH-hCC----CeeccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchh
Confidence            9999999998 776    455543 355566653     356667777777899998    54        1  666432


Q ss_pred             -----CChhhHHHHHHHHHHHHHh
Q 012238          447 -----LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       447 -----~~~~~i~~~~~~l~~~l~~  465 (467)
                           .+++++++++++|++++++
T Consensus       373 ~~~~~~~~e~i~~~~~~l~~~l~~  396 (425)
T 3ecd_A          373 GTTRGFGAAEFREVGRLILEVFEA  396 (425)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             heeccCCHHHHHHHHHHHHHHHhc
Confidence                 2478999999999998875

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.92  E-value=8.2e-24  Score=216.81  Aligned_cols=340  Identities=11%  Similarity=0.000  Sum_probs=211.4

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC----CcchHHHHHHHHHHHhCCCCcccccCceeeeec
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~----~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (467)
                      +.+.|||+.|..-..-|.  .+|.|.+++.+.+.... ..|..    .....+|.+.+++++.      ...++|++  +
T Consensus        54 G~~ylD~~s~~~~~~lGh--~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~~lae~l~~~~~------~~~~~v~~--~  122 (472)
T 3hmu_A           54 GEEILDAMAGLWCVNIGY--GRDELAEVAARQMRELP-YYNTFFKTTHVPAIALAQKLAELAP------GDLNHVFF--A  122 (472)
T ss_dssp             CCEEECTTHHHHTCTTCB--CCHHHHHHHHHHHHHCS-CCCSSSSEECHHHHHHHHHHHHHSC------TTEEEEEE--E
T ss_pred             CCEEEECCCchhhccCCC--CCHHHHHHHHHHHHhcc-ccccccccCCHHHHHHHHHHHHhCC------CCCCEEEE--e
Confidence            457899998855333333  26889999988875432 22322    2233445555555521      12568998  9


Q ss_pred             CCchhHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHHhhCCC------------CeEEeeeec--C-CCCCCC-
Q 012238          158 LSGTGSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARV------------PWSEYRYYD--P-KTVGLD-  215 (467)
Q Consensus       158 ~ggt~al~l~~~~l~~~------~~gd~Vlv~~P~y~~~~~~~~~~G~------------~~~~v~~~~--~-~~~~~d-  215 (467)
                      +||++|++.+.++....      .++++|++..|+|..+.......+.            .+..++...  . .++ .| 
T Consensus       123 ~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~  201 (472)
T 3hmu_A          123 GGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDP  201 (472)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCH
Confidence            99999999985554332      2467999999999887655444333            233444210  0 111 34 


Q ss_pred             -------hhhHHHHHHcC-CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012238          216 -------FEGMIADIKAA-PGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (467)
Q Consensus       216 -------~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~  286 (467)
                             ++.|++.+++. ++++.++++..++|++|.+. +.+.+++|.++|++||+++|+||+|.+|...+   ..+..
T Consensus       202 ~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G---~~~a~  278 (472)
T 3hmu_A          202 EEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG---NWFGT  278 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSCHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccC---ccchh
Confidence                   78888888642 24566777777777778755 88889999999999999999999999886432   11222


Q ss_pred             HHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHh--hccCccCCCchHHHHHHHHHh
Q 012238          287 RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKR--LARPMYSNPPVHGARIVANVV  364 (467)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~L  364 (467)
                       ......++++   +|||.++..|+|+||++   +++++++.            +..  .....+.+.+.+++.++..+|
T Consensus       279 -~~~~v~pdi~---t~sK~l~gg~~plG~v~---~~~~i~~~------------~~~~~~~~~~t~~~np~a~aAa~aaL  339 (472)
T 3hmu_A          279 -QTMGIRPHIM---TIAKGLSSGYAPIGGSI---VCDEVAHV------------IGKDEFNHGYTYSGHPVAAAVALENL  339 (472)
T ss_dssp             -HHHTCCCSEE---EECGGGTTTSSCCEEEE---EEHHHHHH------------HTTSCBCCCCTTTTCHHHHHHHHHHH
T ss_pred             -HHhCCCCcee---eechhhhcCCcceEEEE---ECHHHHHh------------cccCCccccCCCCCCHHHHHHHHHHH
Confidence             2223333443   57899985559999995   67888776            521  122224456777777777666


Q ss_pred             CChhhHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccC-CCCCcccccCCcceEEec-CCC--------------H-HHHH
Q 012238          365 GNPALFDEWKAEMEMMAGRIK-NVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFT-GLN--------------K-AQSD  426 (467)
Q Consensus       365 ~~~~~~~~~~~~l~~~~~~~~-~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~~~-~l~--------------~-~~~~  426 (467)
                      +..      ++  +...++++ ++.+++.+.|+ ++. .|. +..+.+.|.|+.+. .-+              . ++.+
T Consensus       340 ~~~------~~--~~~~~~~~~~~~~~l~~~L~-~l~~~~~-v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  409 (472)
T 3hmu_A          340 RIL------EE--ENILDHVRNVAAPYLKEKWE-ALTDHPL-VGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRE  409 (472)
T ss_dssp             HHH------HH--TTHHHHHHHTHHHHHHHHHH-GGGGSTT-EEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHH
T ss_pred             HHH------HH--hHHHHHHHHHHHHHHHHHHH-HHhcCCC-eEEEEecCceEEEEEecCccccccccchhHHHHHHHHH
Confidence            421      11  23445555 55566666665 442 111 33445555544331 111              2 3355


Q ss_pred             HHHHcccEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          427 NMTNKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       427 ~ll~~~gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      .+++ +||++.++|   ||+.. ..+++++++++++|+++++++
T Consensus       410 ~l~~-~Gv~v~~~g~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~  452 (472)
T 3hmu_A          410 RCFA-NNLIMRHVGDRMIISPPLVITPAEIDEMFVRIRKSLDEA  452 (472)
T ss_dssp             HHHH-TTBCCEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-CCcEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            6665 599999876   77632 338899999999999998753

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.92  E-value=3e-23  Score=208.87  Aligned_cols=214  Identities=10%  Similarity=0.023  Sum_probs=152.4

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh----CCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND----ARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~----~G~  199 (467)
                      +.....+|++.++++...        +++++  ++||++|+.++  +...+.+||+|+++.|+|..+...++.    .|+
T Consensus        79 ~~p~~~~l~~~la~~~g~--------~~~~~--~~sG~~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~  146 (414)
T 3ndn_A           79 GNPTVSVFEERLRLIEGA--------PAAFA--TASGMAAVFTS--LGALLGAGDRLVAARSLFGSCFVVCSEILPRWGV  146 (414)
T ss_dssp             CCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTC
T ss_pred             CChHHHHHHHHHHHHHCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCc
Confidence            445677888888888532        36666  89999999987  444567999999999999988777654    999


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++.       .|++.++++++   ++++++++++|+||||.+.+   +++|+++|+++|+++|+|++|....... 
T Consensus       147 ~~~~v~~-------~d~~~l~~ai~---~~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~-  212 (414)
T 3ndn_A          147 QTVFVDG-------DDLSQWERALS---VPTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQQ-  212 (414)
T ss_dssp             EEEEECT-------TCHHHHHHHTS---SCCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC-
T ss_pred             EEEEeCC-------CCHHHHHHhcC---CCCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            9999876       28999999987   56778889999999999987   5577888999999999999987332111 


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHh-hhhhhhHHHHHHHHHhhccCccCCCchHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAA-RCCEVAVIQVKSQLKRLARPMYSNPPVHGA  357 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  357 (467)
                         .  +    .. ...+++.|+||.++.+| +|+||++   .+++.+. .            ++..........+...+
T Consensus       213 ---~--~----~~-g~div~~S~sK~l~~~G~~~~G~vv---~~~~~~~~~------------l~~~~~~~g~~~~~~~a  267 (414)
T 3ndn_A          213 ---G--F----PL-GVDVVVYSGTKHIDGQGRVLGGAIL---GDREYIDGP------------VQKLMRHTGPAMSAFNA  267 (414)
T ss_dssp             ---C--G----GG-TCSEEEEETTTTTTCSSCCCCEEEE---ECHHHHTTH------------HHHHHHHHCCCCCHHHH
T ss_pred             ---c--h----hc-CCCeEeccCCccccCCCCceEEEEE---ECHHHHHHH------------HHHHHHHcCCCCCHHHH
Confidence               0  0    11 23588999999999889 8899985   5666555 4            33222222333444444


Q ss_pred             HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       358 ~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                      .++...+.          .+....++..++++.+.+.|+ +.
T Consensus       268 ~~~~~~l~----------~l~~r~~~~~~~a~~l~~~L~-~~  298 (414)
T 3ndn_A          268 WVLLKGLE----------TLAIRVQHSNASAQRIAEFLN-GH  298 (414)
T ss_dssp             HHHHHHGG----------GHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred             HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHh-cC
Confidence            43333322          133455566677778888887 54

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.92  E-value=3.6e-23  Score=211.89  Aligned_cols=303  Identities=14%  Similarity=0.060  Sum_probs=193.3

Q ss_pred             hHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCC---CEEEEcCCCCcch----HHHHhhCCCC
Q 012238          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG---AKVLISSPTWGNH----KNIFNDARVP  200 (467)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~g---d~Vlv~~P~y~~~----~~~~~~~G~~  200 (467)
                      ..++++.+++++...      +++|++  |+|++++++++  +...+.+|   ++|+++.|+|+..    ...++..|++
T Consensus       113 ~~~l~~~la~~~g~~------~~~v~~--t~g~t~al~~~--~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~  182 (465)
T 3e9k_A          113 DESIVGLMKDIVGAN------EKEIAL--MNALTVNLHLL--MLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLN  182 (465)
T ss_dssp             THHHHGGGHHHHTCC------GGGEEE--CSCHHHHHHHH--HHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHcCCC------cCCEEE--ECCHHHHHHHH--HHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCc
Confidence            467899999986543      789999  99999999997  34445454   4599999999874    3466778998


Q ss_pred             eEE--eeee-cCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCC
Q 012238          201 WSE--YRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASG  277 (467)
Q Consensus       201 ~~~--v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~  277 (467)
                      +..  +++. .++++.+|++.+++.+++..++++++++++||||||.+++.   ++|.++|+++|+++|+|+++......
T Consensus       183 ~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~la~~~g~~vi~D~a~~~g~~~  259 (465)
T 3e9k_A          183 IEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNI---PAITKAGQAKGCYVGFDLAHAVGNVE  259 (465)
T ss_dssp             HHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCH---HHHHHHHHHTTCEEEEECTTTTTTSC
T ss_pred             ceeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecH---HHHHHHHHHcCCEEEEEhhhhcCCcC
Confidence            742  2221 13457789999999997432478899999999999999986   46777799999999999996533211


Q ss_pred             CCCCChhHHHHHHhcCCeEEEEecCccCcc-cCCCccceEEEecCCHHHHhhhhhhhH----HHHHHHHHh---------
Q 012238          278 SLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARCCEVAV----IQVKSQLKR---------  343 (467)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~v~~~~~~~~~~~~~~~----~~~~~~l~~---------  343 (467)
                         .+   +.   +. ...+++.|++|.++ .|| ++|+++   .++++++.......    ......+..         
T Consensus       260 ---~~---~~---~~-~~D~~~~s~~K~l~~gp~-~~g~l~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  325 (465)
T 3e9k_A          260 ---LY---LH---DW-GVDFACWCSYKYLNAGAG-GIAGAF---IHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPG  325 (465)
T ss_dssp             ---CC---HH---HH-TCCEEEECSSSTTCCCTT-CCCEEE---ECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSS
T ss_pred             ---Cc---hh---hc-CCCEEEECcccccccCCC-ceEEEE---EcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCC
Confidence               11   11   11 24578899999993 343 689986   45666544000000    000000000         


Q ss_pred             hccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--------CCCcccccCC----
Q 012238          344 LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS--------GKDWSFILRQ----  411 (467)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~--------~~~~~~~~~~----  411 (467)
                      ..+....+++.....++..++.   +.+.  ..+++++++++++++++.+.|+ ++-.        + ++++..|.    
T Consensus       326 ~~~~~~gt~~~~~~~a~~aal~---~~~~--~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~-g~~~~~p~~~~~  398 (465)
T 3e9k_A          326 VCGFRISNPPILLVCSLHASLE---IFKQ--ATMKALRKKSVLLTGYLEYLIK-HNYGKDKAATKKP-VVNIITPSHVEE  398 (465)
T ss_dssp             GGGGCCSCCCHHHHHHHHHHHH---HHHH--HCHHHHHHHHHHHHHHHHHHHH-HHCC----------CEEECSCSSGGG
T ss_pred             hHHhccCCccHHHHHHHHHHHH---HHHH--cCHHHHHHHHHHHHHHHHHHHH-hhccccccccCCC-CeEEeCCCCHhh
Confidence            0000011344444444443332   1111  1267888999999999999998 6300        1 25666554    


Q ss_pred             cceEEecCC--C-HHHHHHHHHcccEEEeCC--C--eEEe--ccCChhhHHHHHHHHHHHHHh
Q 012238          412 IGMFSFTGL--N-KAQSDNMTNKWHVYMTKD--G--RISL--AGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       412 ~g~f~~~~l--~-~~~~~~ll~~~gI~v~~g--g--Ris~--~~~~~~~i~~~~~~l~~~l~~  465 (467)
                      .|.++++.+  + .++.+.|.+ +||.+..+  +  |||+  ...+.+++++++++|++++++
T Consensus       399 ~g~~~~~~~~~~~~~l~~~L~~-~Gi~v~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~  460 (465)
T 3e9k_A          399 RGCQLTITFSVPNKDVFQELEK-RGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS  460 (465)
T ss_dssp             BCSCEEEEECCTTCCHHHHHHT-TTEECEEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred             cccEEEEEecCCHHHHHHHHHH-CCEEEecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence            244544432  2 344555554 59988754  3  9987  233779999999999999865

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.91  E-value=6.6e-23  Score=205.42  Aligned_cols=301  Identities=15%  Similarity=0.035  Sum_probs=197.7

Q ss_pred             CCchHHHHHHHHHHHhcCCCCcCCCCcc--hHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-hCC
Q 012238          100 PYVLDVVKKAENLMLERGENKEYLPIEG--LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFP  176 (467)
Q Consensus       100 p~~~~~v~~a~~~~~~~~~~~~Y~~~~G--~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~~~  176 (467)
                      |.+++.+.+++.+.+..    .|.+..|  ..++|+++++++..        +++++  ++||++++.++  +... +.+
T Consensus         8 p~~~~~v~~a~~~~~~~----~~~~~~g~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~~~--~~~l~~~~   71 (394)
T 1o69_A            8 PHMGGNELKYIEEVFKS----NYIAPLGEFVNRFEQSVKDYSKS--------ENALA--LNSATAALHLA--LRVAGVKQ   71 (394)
T ss_dssp             ----CCHHHHHHHHHHH----TTTSCTTHHHHHHHHHHHHHHCC--------SEEEE--ESCHHHHHHHH--HHHTTCCT
T ss_pred             CCCCHHHHHHHHHHHHc----CCccCCChHHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHcCCCC
Confidence            33466778888777754    3656567  89999999999743        47888  99999999997  3434 569


Q ss_pred             CCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012238          177 GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (467)
Q Consensus       177 gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~  256 (467)
                      ||+|+++.|+|..+...++..|++++.++.+  +++.+|++.+++.+++.+.++++++++   ||||...+   +++|.+
T Consensus        72 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~v~~~---~~~G~~~~---l~~i~~  143 (394)
T 1o69_A           72 DDIVLASSFTFIASVAPICYLKAKPVFIDCD--ETYNIDVDLLKLAIKECEKKPKALILT---HLYGNAAK---MDEIVE  143 (394)
T ss_dssp             TCEEEEESSSCGGGTHHHHHTTCEEEEECBC--TTSSBCHHHHHHHHHHCSSCCCEEEEE---CGGGCCCC---HHHHHH
T ss_pred             CCEEEECCCccHHHHHHHHHcCCEEEEEEeC--CCCCcCHHHHHHHHhcccCCceEEEEE---CCCCChhh---HHHHHH
Confidence            9999999999999999999999999999984  467899999999998532246677765   38997654   557777


Q ss_pred             HHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHH
Q 012238          257 VIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVI  335 (467)
Q Consensus       257 ~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~  335 (467)
                      +|+++|+++|+||+|. ++.+.+.  ..      .....  +.+.||||..+++|.|+||++  +.++++++.       
T Consensus       144 l~~~~~~~li~Dea~~~g~~~~~~--~~------~~~~~--~~~~s~s~~K~l~~~~~G~~~--~~~~~l~~~-------  204 (394)
T 1o69_A          144 ICKENDIVLIEDAAEALGSFYKNK--AL------GTFGE--FGVYSYNGNKIITTSGGGMLI--GKNKEKIEK-------  204 (394)
T ss_dssp             HHHHTTCEEEEECTTCTTCEETTE--ET------TSSSS--EEEEECCTTSSSCCSSCEEEE--ESCHHHHHH-------
T ss_pred             HHHHcCCEEEEECcCcccceeCCc--cc------ccccC--cEEEEEeCCccCCCCCceEEE--ECCHHHHHH-------
Confidence            7999999999999998 5554321  10      01112  455666544455678999996  446787777       


Q ss_pred             HHHHHHHhhccCccCC--------------CchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          336 QVKSQLKRLARPMYSN--------------PPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       336 ~~~~~l~~~~~~~~~~--------------~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                           +..........              .+.+...++...+.          .+++..++++++++++.+.|+ ++ +
T Consensus       205 -----l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~----------~l~~~~~~~~~~~~~l~~~L~-~~-~  267 (394)
T 1o69_A          205 -----ARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQME----------VLEQRVLKKREIYEWYKEFLG-EY-F  267 (394)
T ss_dssp             -----HHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHT----------THHHHHHHHHHHHHHHHHHHT-TT-E
T ss_pred             -----HHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhc-cc-c
Confidence                 44332221111              22232222211121          144567788888899999988 64 2


Q ss_pred             CCCcccccCC----cceE-Ee--cC-----------------------CCHHHHHHHHHcccEEEeCCC-----------
Q 012238          402 GKDWSFILRQ----IGMF-SF--TG-----------------------LNKAQSDNMTNKWHVYMTKDG-----------  440 (467)
Q Consensus       402 ~~~~~~~~~~----~g~f-~~--~~-----------------------l~~~~~~~ll~~~gI~v~~gg-----------  440 (467)
                          ++.++.    ++++ ++  ++                       .+.+.+.+.|.++||.++++.           
T Consensus       268 ----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~  343 (394)
T 1o69_A          268 ----SFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKG  343 (394)
T ss_dssp             ----ECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTT
T ss_pred             ----cccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhc
Confidence                222221    2321 22  22                       123344444555799998761           


Q ss_pred             ------------------eEEeccCChhhHHHHHHHHHHHHH
Q 012238          441 ------------------RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       441 ------------------Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                                        |.+....+++++++++++|+++++
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~  385 (394)
T 1o69_A          344 AKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK  385 (394)
T ss_dssp             CEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence                              111122588999999999999875

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.91  E-value=9.6e-23  Score=204.07  Aligned_cols=213  Identities=15%  Similarity=0.101  Sum_probs=157.9

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~  199 (467)
                      +.....++++.+++++..        +++++  ++||++|+.++  +...+.+||+|+++.|+|..+...+    +..|+
T Consensus        64 ~~~~~~~l~~~la~~~g~--------~~~~~--~~sGt~A~~~a--l~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~  131 (392)
T 3qhx_A           64 GNPTRTALEAALAAVEDA--------AFGRA--FSSGMAAADCA--LRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNV  131 (392)
T ss_dssp             CCHHHHHHHHHHHHHTTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTC
T ss_pred             CChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCc
Confidence            556788999999999643        25666  79999999998  4445779999999999998776665    67899


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++.       .|++.+++.++   ++++++++++|+||||.+.+   +++|+++|+++|+++|+|++|......  
T Consensus       132 ~~~~v~~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~--  196 (392)
T 3qhx_A          132 EYTPVAL-------ADLDAVRAAIR---PTTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQ--  196 (392)
T ss_dssp             EEEEECT-------TCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC--
T ss_pred             EEEEeCC-------CCHHHHHHhhC---CCCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccC--
Confidence            8888876       28999999987   57889999999999999987   567888899999999999998755332  


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                        ...      .. ..++++.|+||.++.+| .|+||++  +.++++.+.            +...........+...+.
T Consensus       197 --~~~------~~-~~di~~~S~sK~lg~~g~~~~G~v~--~~~~~~~~~------------l~~~~~~~g~~~~~~~~~  253 (392)
T 3qhx_A          197 --QPL------SL-GADVVLHSTTKYIGGHSDVVGGALV--TNDEELDQS------------FAFLQNGAGAVPGPFDAY  253 (392)
T ss_dssp             --CGG------GG-TCSEEEEETTTTTTCSSCCCCEEEE--ESCHHHHHH------------HHHHHHHHCCCCCHHHHH
T ss_pred             --ChH------Hh-CCcEEEEcCccccCCCCCceEEEEE--ECcHHHHHH------------HHHHHHhcCCCCCHHHHH
Confidence              111      11 34588999999999888 7899996  455677776            443333334456666666


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      ++...+..          +....++..++.+.+.+.|+
T Consensus       254 ~~~~~l~~----------l~~~~~~~~~~~~~l~~~L~  281 (392)
T 3qhx_A          254 LTMRGLKT----------LVLRMQRHSENAAAVAEFLA  281 (392)
T ss_dssp             HHHHHHTT----------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhH----------HHHHHHHHHHHHHHHHHHHh
Confidence            66555543          22334455566666777776

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.91  E-value=4.1e-23  Score=204.87  Aligned_cols=296  Identities=16%  Similarity=0.108  Sum_probs=202.1

Q ss_pred             chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-hCCCCEE
Q 012238          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKV  180 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~~~gd~V  180 (467)
                      +++.+.+++.+.+..+   .|.+..+..++|+++++++..        +++++  ++||++|+.++  +... +.+||+|
T Consensus        14 ~~~~v~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~sGt~al~~a--l~~~~~~~gd~V   78 (367)
T 3nyt_A           14 IKDKIDAGIQRVLRHG---QYILGPEVTELEDRLADFVGA--------KYCIS--CANGTDALQIV--QMALGVGPGDEV   78 (367)
T ss_dssp             HHHHHHHHHHHHHHHC---CCSSCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHTTCCTTCEE
T ss_pred             cCHHHHHHHHHHHhcC---CccCChHHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHhCCCCcCEE
Confidence            3678888888877653   466778899999999999743        26777  89999999997  4444 5699999


Q ss_pred             EEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q 012238          181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE  260 (467)
Q Consensus       181 lv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~  260 (467)
                      +++.|+|..+...++..|++++.++++ ++++.+|++.+++.++   +++++++   |+||||...+.   ++|.++|++
T Consensus        79 i~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~d~~~l~~~i~---~~~~~v~---~~~~~G~~~~~---~~i~~la~~  148 (367)
T 3nyt_A           79 ITPGFTYVATAETVALLGAKPVYVDID-PRTYNLDPQLLEAAIT---PRTKAII---PVSLYGQCADF---DAINAIASK  148 (367)
T ss_dssp             EEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCGGGTGGGCC---TTEEEEC---CBCGGGCCCCH---HHHHHHHHH
T ss_pred             EECCCccHHHHHHHHHcCCEEEEEecC-CccCCcCHHHHHHhcC---cCCcEEE---eeCCccChhhH---HHHHHHHHH
Confidence            999999999999999999999999985 4457899999999886   5677766   78999987664   567777999


Q ss_pred             cCCeeEEeccCCCC-CCCCCCCChhHHHHHHhcCCeEEEEecC--ccCcccCCCccceEEEecCCHHHHhhhhhhhHHHH
Q 012238          261 KNHIPFFDVAYQGF-ASGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQV  337 (467)
Q Consensus       261 ~~~~li~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~  337 (467)
                      +|+++|+|++|... .++.   ...     ...  ..+++.||  +|.++.+|. .|+++  +.++++.+.         
T Consensus       149 ~~~~li~D~a~~~g~~~~~---~~~-----~~~--~di~~~Sf~~~K~l~~~g~-gg~~~--~~~~~l~~~---------  206 (367)
T 3nyt_A          149 YGIPVIEDAAQSFGASYKG---KRS-----CNL--STVACTSFFPSAPLGCYGD-GGAIF--TNDDELATA---------  206 (367)
T ss_dssp             TTCCBEEECTTTTTCEETT---EET-----TSS--SSEEEEECCTTSSSCCSSC-CEEEE--ESCHHHHHH---------
T ss_pred             cCCEEEEECccccCCeECC---eec-----cCC--CCEEEEECCCCCcCCCcCc-eeEEE--eCCHHHHHH---------
Confidence            99999999998643 2221   000     011  15778887  899996687 78875  567877776         


Q ss_pred             HHHHHhhccC------------ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc
Q 012238          338 KSQLKRLARP------------MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDW  405 (467)
Q Consensus       338 ~~~l~~~~~~------------~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~  405 (467)
                         ++.....            .....+.+.+.++...+.          .+++..++.+++++++.+.|+ ++++    
T Consensus       207 ---~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~----------~~~~~~~~~~~~~~~~~~~L~-~~~~----  268 (367)
T 3nyt_A          207 ---IRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLE----------IFEEEIALRQKVAAEYDLSLK-QVGI----  268 (367)
T ss_dssp             ---HHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHH----------THHHHHHHHHHHHHHHHHHHH-HTTC----
T ss_pred             ---HHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhc-cCCe----
Confidence               4433221            122344444444333322          234455666677788888888 7653    


Q ss_pred             cccc-CCc---ceEE-ecCC-CHHHHHHHHHcccEEEeCCC----------------------------eEEec-cCChh
Q 012238          406 SFIL-RQI---GMFS-FTGL-NKAQSDNMTNKWHVYMTKDG----------------------------RISLA-GLSLA  450 (467)
Q Consensus       406 ~~~~-~~~---g~f~-~~~l-~~~~~~~ll~~~gI~v~~gg----------------------------Ris~~-~~~~~  450 (467)
                      .+.. +.+   .++. .+.. +.+.+.+.|+++||.+..+.                            ||++. .++++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~  348 (367)
T 3nyt_A          269 GTPFIEVNNISVYAQYTVRMDNRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTA  348 (367)
T ss_dssp             CCCCCCTTEECCCSSEEEECSSHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHH
T ss_pred             eccCCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHH
Confidence            2211 111   1211 1222 45555555555699776430                            55543 35889


Q ss_pred             hHHHHHHHHHHH
Q 012238          451 KCEYLADAIIDS  462 (467)
Q Consensus       451 ~i~~~~~~l~~~  462 (467)
                      +++++++.|++.
T Consensus       349 ~i~~v~~~~~~~  360 (367)
T 3nyt_A          349 SIKIICAALTNL  360 (367)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.91  E-value=1.7e-23  Score=213.24  Aligned_cols=321  Identities=16%  Similarity=0.119  Sum_probs=203.8

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCC---cchHHH------H-HHHHHHHhCCCCcccccCcee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI---EGLAAF------N-KVTAELLFGADNSVLKEQRVA  153 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~---~G~~~l------r-~aia~~l~~~~~~~~~~~~i~  153 (467)
                      +.|+|..+..      +. ++.+.+++.+.+.......|...   .|....      . +.+++++...      . ..+
T Consensus        46 ~~i~l~~~~~------~~-~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~------~-~~v  111 (447)
T 3h7f_A           46 DTLEMIASEN------FV-PRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE------F-ANV  111 (447)
T ss_dssp             HSEECCTTCC------CC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS------E-EEC
T ss_pred             CceeEecCCC------CC-CHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCC------c-eEE
Confidence            5788865432      22 88899998887643333344321   233322      2 5555554321      2 223


Q ss_pred             eeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HHhhC--CCCeEEeeeecCCCCCCChhhHHHHHHcCCC
Q 012238          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDA--RVPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (467)
Q Consensus       154 ~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~---~~~~~--G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~  228 (467)
                      +  +++|++++..+  +...+.+||+|++++|+|..+..   .+...  +..++.++++ ++++.+|++.+++.+++  .
T Consensus       112 ~--~~sGs~a~~~a--~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~d~~~l~~~i~~--~  184 (447)
T 3h7f_A          112 Q--PHSGAQANAAV--LHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVD-PATHLIDMDAVRATALE--F  184 (447)
T ss_dssp             C--CSSHHHHHHHH--HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCC-TTTCSCCHHHHHHHHHH--H
T ss_pred             E--eCCHHHHHHHH--HHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcC-cccCCcCHHHHHHHHHh--c
Confidence            2  57788999887  45567799999999999876321   11222  3344555553 34577999999999964  3


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      +++++++++|+||++.     ++++|.++|+++|+++|+||+|. ++.+.+.....  .    .  ...+++.|+||.+ 
T Consensus       185 ~~~~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~--~----~--~~di~~~s~sK~l-  250 (447)
T 3h7f_A          185 RPKVIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP--V----P--HADVVSTTVHKTL-  250 (447)
T ss_dssp             CCSEEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS--T----T--TCSEEEEESSGGG-
T ss_pred             CCeEEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC--C----C--CCcEEEecCCcCC-
Confidence            4568888899999987     57788888999999999999963 33322110110  1    1  1237799999987 


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCcc-CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMY-SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  386 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~  386 (467)
                       +|+|.||++   .++++++.            +.....+.. .+++...+.++..++..  ..   .+++++..+++.+
T Consensus       251 -~G~~gG~i~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~~a~~~a~~~--~~---~~~~~~~~~~~~~  309 (447)
T 3h7f_A          251 -GGGRSGLIV---GKQQYAKA------------INSAVFPGQQGGPLMHVIAGKAVALKI--AA---TPEFADRQRRTLS  309 (447)
T ss_dssp             -CCCSCEEEE---ECGGGHHH------------HHHHHTTTTCSSCCHHHHHHHHHHHHH--TT---SHHHHHHHHHHHH
T ss_pred             -CCCCeEEEE---ECHHHHHH------------HhhhcCCcccCCccHHHHHHHHHHHHH--hh---CHHHHHHHHHHHH
Confidence             489999995   67777776            444333332 23333322333322221  00   1235677888889


Q ss_pred             HHHHHHHHhhhcc-----CCCCCccccc-CCcceEEecC-----CCHHHHHHHHHcccEEEe----CC---------C-e
Q 012238          387 VRQKLFDSLSAKD-----KSGKDWSFIL-RQIGMFSFTG-----LNKAQSDNMTNKWHVYMT----KD---------G-R  441 (467)
Q Consensus       387 ~r~~l~~~l~~~~-----g~~~~~~~~~-~~~g~f~~~~-----l~~~~~~~ll~~~gI~v~----~g---------g-R  441 (467)
                      +++++.+.|+ +.     |    +.... +..+.++|+.     ++.+.+.++++++||.+.    ++         + |
T Consensus       310 ~~~~l~~~L~-~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lR  384 (447)
T 3h7f_A          310 GARIIADRLM-APDVAKAG----VSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLR  384 (447)
T ss_dssp             HHHHHHHHHT-SHHHHHTT----CEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEE
T ss_pred             HHHHHHHHHH-hccccCCC----eEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCcee
Confidence            9999999998 76     6    34443 3345566653     366778888888899988    43         1 8


Q ss_pred             EEecc-----CChhhHHHHHHHHHHHHHh
Q 012238          442 ISLAG-----LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       442 is~~~-----~~~~~i~~~~~~l~~~l~~  465 (467)
                      |+...     ++++++++++++|.+++++
T Consensus       385 ig~~~~~~~~~~~eei~~~~~~l~~~l~~  413 (447)
T 3h7f_A          385 IGTPALATRGFGDTEFTEVADIIATALAT  413 (447)
T ss_dssp             EECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred             ccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence            87542     4789999999999998864

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.91  E-value=2.4e-23  Score=209.86  Aligned_cols=310  Identities=16%  Similarity=0.171  Sum_probs=187.7

Q ss_pred             hHHHHHHHHHHHhcCCCCcCC------CCcchHH----HHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHH
Q 012238          103 LDVVKKAENLMLERGENKEYL------PIEGLAA----FNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE  172 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~------~~~G~~~----lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~  172 (467)
                      ++.+.+++.+.+.......|.      .....+.    .++.+++++..      ++++|++  ++ |++++.++  +..
T Consensus        43 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~~v~~--~s-Gs~a~~~a--~~~  111 (420)
T 3gbx_A           43 SPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGA------DYANVQP--HS-GSQANFAV--YTA  111 (420)
T ss_dssp             CHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTC------SEEECCC--SS-HHHHHHHH--HHH
T ss_pred             CHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCC------CCceeEe--cC-cHHHHHHH--HHH
Confidence            788999998877432212221      1222223    33455665432      2556655  55 58888887  445


Q ss_pred             HhCCCCEEEEcCCCCcchH---HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHH
Q 012238          173 RYFPGAKVLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPE  249 (467)
Q Consensus       173 ~~~~gd~Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~  249 (467)
                      .+.+||+|+++.|+|..+.   ..+...|..+..+++..+.++.+|++.+++.+++  .+++++++++|+||+  ..+  
T Consensus       112 ~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~~~--~~~--  185 (420)
T 3gbx_A          112 LLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKE--HKPKMIIGGFSAYSG--VVD--  185 (420)
T ss_dssp             HCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHH--HCCSEEEECCTTCCS--CCC--
T ss_pred             hcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHh--cCCeEEEEecCccCC--ccC--
Confidence            5779999999999997743   2223334434433332245677999999999985  246688888899985  444  


Q ss_pred             HHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCH---HH
Q 012238          250 QWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS---DL  325 (467)
Q Consensus       250 ~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~---~~  325 (467)
                       +++|.++|++||+++|+||+|. ++...+.  ....      .....+++.|+||.++  |.|.||++   .++   ++
T Consensus       186 -l~~l~~l~~~~~~~li~De~~~~~~~~~~~--~~~~------~~~~di~~~s~sK~~~--g~~gg~~~---~~~~~~~~  251 (420)
T 3gbx_A          186 -WAKMREIADSIGAYLFVDMAHVAGLIAAGV--YPNP------VPHAHVVTTTTHKTLA--GPRGGLIL---AKGGDEEL  251 (420)
T ss_dssp             -HHHHHHHHHHTTCEEEEECTTTHHHHHTTS--SCCS------TTTSSEEEEESSGGGC--SCSCEEEE---ESSCCHHH
T ss_pred             -HHHHHHHHHHcCCEEEEECCcchhceeccc--CCcc------cccCCEEEeecccCCC--CCCceEEE---EcCCcHHH
Confidence             6788888999999999999964 2222110  0000      0123488999999985  55568885   444   55


Q ss_pred             HhhhhhhhHHHHHHHHHhhccCc-cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 012238          326 AARCCEVAVIQVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD  404 (467)
Q Consensus       326 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~  404 (467)
                      .+.            +....... ..+++...+.++..++..  .   ..+++++++++++++++++.+.|+ +.|    
T Consensus       252 ~~~------------~~~~~~~~~~~~~~~~~~~a~~~a~~~--~---~~~~~~~~~~~~~~~~~~l~~~L~-~~g----  309 (420)
T 3gbx_A          252 YKK------------LNSAVFPSAQGGPLMHVIAGKAVALKE--A---MEPEFKVYQQQVAKNAKAMVEVFL-NRG----  309 (420)
T ss_dssp             HHH------------HHHHHC----CCCCHHHHHHHHHHHHH--T---TSHHHHHHHHHHHHHHHHHHHHHH-HTT----
T ss_pred             HHH------------hhhhcCCCCCCCcchhHHHHHHHHHHH--H---HhHhHHHHHHHHHHHHHHHHHHHH-hcC----
Confidence            555            43332222 223333333333322211  0   023356788889999999999998 766    


Q ss_pred             cccccC-CcceEEecC-----CCHHHHHHHHHcccEEEeC-------C------C-eEEecc-----CChhhHHHHHHHH
Q 012238          405 WSFILR-QIGMFSFTG-----LNKAQSDNMTNKWHVYMTK-------D------G-RISLAG-----LSLAKCEYLADAI  459 (467)
Q Consensus       405 ~~~~~~-~~g~f~~~~-----l~~~~~~~ll~~~gI~v~~-------g------g-Ris~~~-----~~~~~i~~~~~~l  459 (467)
                      +.+..+ ..+.++|+.     .+.+.+.++++++||.+.+       +      | ||++..     ++++++++++++|
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l  389 (420)
T 3gbx_A          310 YKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWM  389 (420)
T ss_dssp             CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHH
T ss_pred             CeeccCCCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHH
Confidence            455443 345565543     3566777777778999987       3      1 888753     3578999999999


Q ss_pred             HHHHHh
Q 012238          460 IDSYHN  465 (467)
Q Consensus       460 ~~~l~~  465 (467)
                      ++++++
T Consensus       390 ~~~l~~  395 (420)
T 3gbx_A          390 CDVLDN  395 (420)
T ss_dssp             HHHHHT
T ss_pred             HHHHhC
Confidence            998865

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.91  E-value=8.1e-24  Score=212.37  Aligned_cols=321  Identities=15%  Similarity=0.156  Sum_probs=203.7

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC------CCcchHHHH----HHHHHHHhCCCCcccccCcee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAAFN----KVTAELLFGADNSVLKEQRVA  153 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~------~~~G~~~lr----~aia~~l~~~~~~~~~~~~i~  153 (467)
                      .+++++.+.|       . ++.+.+++.+.+.......|.      ......+++    +++++++...      ++.++
T Consensus        25 ~~~~~~~~~~-------~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~------~~~i~   90 (405)
T 2vi8_A           25 KIELIASENF-------V-SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE------HANVQ   90 (405)
T ss_dssp             SEECCTTCCC-------C-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS------EEECC
T ss_pred             ceeeccCccc-------C-CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC------ceEEE
Confidence            5666654332       2 788999988877432212221      112334444    5888886432      34454


Q ss_pred             eeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-H--HhhCCC--CeEEeeeecCCCCCCChhhHHHHHHcCCC
Q 012238          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN-I--FNDARV--PWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (467)
Q Consensus       154 ~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~-~--~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~l~~~~~  228 (467)
                      +  ++| ++++.++  +...+.+||+|+++.|+|..+.. .  +...|.  +++.++++ ++++.+|++.+++.+++  .
T Consensus        91 ~--~sG-t~a~~~a--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~d~~~l~~~i~~--~  162 (405)
T 2vi8_A           91 P--HSG-AQANMAV--YFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVD-PETHVIDYDDVREKARL--H  162 (405)
T ss_dssp             C--SSH-HHHHHHH--HHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBC-TTTCSBCHHHHHHHHHH--H
T ss_pred             e--cCc-HHHHHHH--HHHhcCCCCEEEEecccccchhcccchhhhccceeEEEecccc-cccCCcCHHHHHHHHHh--c
Confidence            4  444 9999998  44446799999999999987743 1  123343  66666653 34678999999999974  1


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc-
Q 012238          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-  307 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-  307 (467)
                      +++++++ +|+|+ |...+   +++|.++|++||+++|+||+|.....+. +.....   + .  ...+++.|+||.++ 
T Consensus       163 ~~~~v~~-~~~~~-~~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~-~~~~~~---~-~--~~di~~~s~sK~~~g  230 (405)
T 2vi8_A          163 RPKLIVA-AAAAY-PRIID---FAKFREIADEVGAYLMVDMAHIAGLVAA-GLHPNP---V-P--YAHFVTTTTHKTLRG  230 (405)
T ss_dssp             CCSEEEE-CCSSC-CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHT-TSSCCS---T-T--TCSEEEEESSSTTCC
T ss_pred             CCeEEEE-eCCCC-CccCC---HHHHHHHHHHcCCEEEEEcccccccccc-CcCCCc---c-c--cCCEEEEeccccCCC
Confidence            4456665 44554 34444   6788888999999999999987322111 011111   1 1  12388999999997 


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCC-chHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNP-PVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  386 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~  386 (467)
                      ++|   ||++   .++++++.            +.........+. +.....++..++...  .   ...+++.++++++
T Consensus       231 ~~g---G~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~aa~~~al~~~--~---~~~~~~~~~~~~~  287 (405)
T 2vi8_A          231 PRG---GMIL---CQEQFAKQ------------IDKAIFPGIQGGPLMHVIAAKAVAFGEA--L---QDDFKAYAKRVVD  287 (405)
T ss_dssp             CSC---EEEE---ECHHHHHH------------HHHHHTTTTCSSCCHHHHHHHHHHHHHH--H---SHHHHHHHHHHHH
T ss_pred             CCC---eEEE---EcHHHHHH------------HHhhhcccccCCCCHHHHHHHHHHHHHH--H---hhhHHHHHHHHHH
Confidence            666   9985   56777776            444333333233 333323333333211  0   1246788899999


Q ss_pred             HHHHHHHHhhhccCCCCCcccccC-CcceEEecCC-----CHHHHHHHHHcccEEEeCC------------C--eEEecc
Q 012238          387 VRQKLFDSLSAKDKSGKDWSFILR-QIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD------------G--RISLAG  446 (467)
Q Consensus       387 ~r~~l~~~l~~~~g~~~~~~~~~~-~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g------------g--Ris~~~  446 (467)
                      +++++.+.|+ ++|    +++..+ .+++++|+.+     +.+.+.+.+.++||.+.+|            +  ||+++.
T Consensus       288 ~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~  362 (405)
T 2vi8_A          288 NAKRLASALQ-NEG----FTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAA  362 (405)
T ss_dssp             HHHHHHHHHH-HTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHH
T ss_pred             HHHHHHHHHH-hCC----CeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeee
Confidence            9999999999 776    455554 3566777643     4444555556679998863            2  999884


Q ss_pred             -----CChhhHHHHHHHHHHHHHhc
Q 012238          447 -----LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       447 -----~~~~~i~~~~~~l~~~l~~~  466 (467)
                           ++++++++++++|+++++++
T Consensus       363 ~~~~~~~~~~i~~~~~~l~~~~~~~  387 (405)
T 2vi8_A          363 VTTRGFGLEEMDEIAAIIGLVLKNV  387 (405)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred             eeecCCCHHHHHHHHHHHHHHHhcc
Confidence                 57899999999999998754

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.91  E-value=7.1e-23  Score=208.98  Aligned_cols=317  Identities=14%  Similarity=0.068  Sum_probs=210.3

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc---CceeeeecCCchhHHHHHHHHHHHhC----
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE---QRVATVQGLSGTGSLRLAAALIERYF----  175 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~---~~i~~~~t~ggt~al~l~~~~l~~~~----  175 (467)
                      ++.+.+++.+.++.+. ..|....+..++++.+.+++....|.+.+.   ..+++  |+||++|+.++.  .....    
T Consensus        55 ~~~v~e~~~~a~~~~~-~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~--t~ggtea~~~al--~a~~~~~~~  129 (452)
T 2dgk_A           55 DENVHKLMDLSINKNW-IDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTN--TIGSSEACMLGG--MAMKWRWRK  129 (452)
T ss_dssp             CHHHHHHHHHTTTCBT-TCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEE--ESSHHHHHHHHH--HHHHHHHHH
T ss_pred             hHHHHHHHHHHhccCC-CChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEE--eCCHHHHHHHHH--HHHHHHHHH
Confidence            5788888888775432 456566787777777766665444443221   13777  999999999873  33221    


Q ss_pred             ----CC-----CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCC
Q 012238          176 ----PG-----AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDP  246 (467)
Q Consensus       176 ----~g-----d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~  246 (467)
                          +|     ++|++++ +|..|...++..|++++.+|+++ +++.+|++.|++.++   +++++|++++|+||||.+.
T Consensus       130 ~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG~~~  204 (452)
T 2dgk_A          130 RMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRP-GQLFMDPKRMIEACD---ENTIGVVPTFGVTYTGNYE  204 (452)
T ss_dssp             HHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHHHHCC---TTEEEEECBBSCTTTCBBC
T ss_pred             HHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCC-CCCeECHHHHHHHHh---hCCEEEEEEcCCcCCcccC
Confidence                45     5999999 99999999999999999999853 368899999999997   5688999999999999997


Q ss_pred             CHHHHHHHHHHHHhc------CCeeEEeccCCCCCC---CCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          247 TPEQWEKIADVIQEK------NHIPFFDVAYQGFAS---GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       247 ~~~~l~~l~~~~~~~------~~~li~Deay~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                      +.+   +|+++|+++      |+++++|++|.++..   .. +. .+.    .....-.+++.|++| +++.|+++||++
T Consensus       205 ~l~---~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~-~~-~~~----~~~~~~d~~~~~~hK-~~~~~~~~G~~~  274 (452)
T 2dgk_A          205 FPQ---PLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAP-DI-VWD----FRLPRVKSISASGHK-FGLAPLGCGWVI  274 (452)
T ss_dssp             CHH---HHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCT-TC-CCS----TTSTTEEEEEEETTT-TTCCCSSCEEEE
T ss_pred             CHH---HHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCc-cc-hhh----cCCCCCcEEEECccc-ccCCCCCeEEEE
Confidence            655   666668885      999999999987642   11 00 000    011123456788899 556889999996


Q ss_pred             EecCCHHHH-hhhhhhhHHHHHHHHHhhccCc----------cC--CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012238          318 VVCSSSDLA-ARCCEVAVIQVKSQLKRLARPM----------YS--NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  384 (467)
Q Consensus       318 ~v~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~----------~~--~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~  384 (467)
                        +.+++.+ +.            +.......          ..  ....+.+.++...+.        .+.++++.+++
T Consensus       275 --~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg--------~~g~~~~~~~~  332 (452)
T 2dgk_A          275 --WRDEEALPQE------------LVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG--------REGYTKVQNAS  332 (452)
T ss_dssp             --ESSGGGSCGG------------GCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred             --EcCHHHHHHH------------hccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh--------HHHHHHHHHHH
Confidence              4555433 33            21100000          01  112333344333331        23466788889


Q ss_pred             HHHHHHHHHHhhhccCCCCCccccc-----CCcceEEec--C-----CC-HHHHHHHHHcccEEEe----CC---C----
Q 012238          385 KNVRQKLFDSLSAKDKSGKDWSFIL-----RQIGMFSFT--G-----LN-KAQSDNMTNKWHVYMT----KD---G----  440 (467)
Q Consensus       385 ~~~r~~l~~~l~~~~g~~~~~~~~~-----~~~g~f~~~--~-----l~-~~~~~~ll~~~gI~v~----~g---g----  440 (467)
                      .++++++.+.|+ +++.   +++..     +..++++|.  +     ++ .++.+.|.+ .||.+.    |+   +    
T Consensus       333 ~~~a~~l~~~L~-~~~~---~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~-~Gi~v~~~~~~~~~~~~~~l  407 (452)
T 2dgk_A          333 YQVAAYLADEIA-KLGP---YEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRL-RGWQVPAFTLGGEATDIVVM  407 (452)
T ss_dssp             HHHHHHHHHHHH-TTSS---EEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHH-TTCBCCEEECSTTCTTCEEE
T ss_pred             HHHHHHHHHHHH-hCCC---eEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHh-cCCeeeeeeCCcccCCeEEE
Confidence            999999999998 7641   55553     344544442  2     23 445556555 588432    32   2    


Q ss_pred             eEEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238          441 RISLAGL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 Ris~~~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                      ||+++.. ++++++++++.|+++++.+
T Consensus       408 Ris~~~~~t~e~id~li~~l~~~~~~~  434 (452)
T 2dgk_A          408 RIMCRRGFEMDFAELLLEDYKASLKYL  434 (452)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            9998753 5689999999999987643

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.91  E-value=6.9e-22  Score=199.19  Aligned_cols=175  Identities=14%  Similarity=0.086  Sum_probs=135.2

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCC--cchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEE
Q 012238          103 LDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV  180 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~V  180 (467)
                      ++.+.+++.   ... .+.|...  ....++++.+++++..        +++++  ++||++|++++  +...+.+||+|
T Consensus        35 ~~~~~~~~~---~~~-~~~y~~~~~~~~~~l~~~la~~~g~--------~~~~~--~~~gt~a~~~a--l~~l~~~gd~v   98 (412)
T 2cb1_A           35 LEEGQERFA---TGE-GYVYARQKDPTAKALEERLKALEGA--------LEAVV--LASGQAATFAA--LLALLRPGDEV   98 (412)
T ss_dssp             HHHHHHHHH---HCC-SCSBTTTCCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHTTCCTTCEE
T ss_pred             hHHHHHHhc---ccc-CcCcCCCCChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEE
Confidence            556666553   222 3566643  6789999999999643        36777  89999999998  44346799999


Q ss_pred             EEcCCCCcchHHH----HhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012238          181 LISSPTWGNHKNI----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (467)
Q Consensus       181 lv~~P~y~~~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~  256 (467)
                      +++.|+|..+...    ++..|++++.++.        |++.+++.++   ++++++++++|+||||.+++   +++|++
T Consensus        99 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~---l~~i~~  164 (412)
T 2cb1_A           99 VAAKGLFGQTIGLFGQVLSLMGVTVRYVDP--------EPEAVREALS---AKTRAVFVETVANPALLVPD---LEALAT  164 (412)
T ss_dssp             EEETTCCHHHHHHHHHTTTTTTCEEEEECS--------SHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHH
T ss_pred             EEeCCCchhHHHHHHHHHHHcCCEEEEECC--------CHHHHHHHhc---cCCeEEEEeCCCCCCccccc---HHHHHH
Confidence            9999999875554    4557888888765        3888988886   57889999999999999997   668888


Q ss_pred             HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       257 ~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                      +|+++|+++|+|++|..+.+.   ...  .    . ...++++.|+||.++.+|+|+||++
T Consensus       165 l~~~~~~~li~D~~~~~~~~~---~~~--~----~-~~~di~~~S~~K~~~~~~~~~G~~~  215 (412)
T 2cb1_A          165 LAEEAGVALVVDNTFGAAGAL---CRP--L----A-WGAHVVVESLTKWASGHGSVLGGAV  215 (412)
T ss_dssp             HHHHHTCEEEEECGGGTTTTS---CCG--G----G-GTCSEEEEETTTTTTCSSCCCCEEE
T ss_pred             HHHHcCCEEEEECCCcccccc---CCc--c----c-cCCeEEEECCcccccCCCCcEEEEE
Confidence            899999999999999876321   111  1    1 2367899999999999999999997

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.91  E-value=4.3e-23  Score=205.06  Aligned_cols=299  Identities=15%  Similarity=0.072  Sum_probs=200.4

Q ss_pred             chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-hCCCCEE
Q 012238          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKV  180 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~~~gd~V  180 (467)
                      +++.+.+++.+.+..+   .|.+..+..++|+++++++..        +++++  ++||++|+.++  +... +.+||+|
T Consensus        15 ~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~i~--~~sgt~al~~~--l~~l~~~~gd~V   79 (373)
T 3frk_A           15 IEYEIKFKFEEIYKRN---WFILGDEDKKFEQEFADYCNV--------NYCIG--CGNGLDALHLI--LKGYDIGFGDEV   79 (373)
T ss_dssp             HHHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHTS--------SEEEE--ESCHHHHHHHH--HHHTTCCTTCEE
T ss_pred             CCHHHHHHHHHHHHCC---CccCCchHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHcCCCCcCEE
Confidence            3678888888877653   366788999999999999743        36777  89999999997  4444 5699999


Q ss_pred             EEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q 012238          181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE  260 (467)
Q Consensus       181 lv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~  260 (467)
                      +++.|+|..+...++..|++++.++.+ ++++.+|++.+++.++   +++++++   ++||||...+.+   +|.++|++
T Consensus        80 i~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~l~---~~~~~v~---~~n~~G~~~~l~---~i~~l~~~  149 (373)
T 3frk_A           80 IVPSNTFIATALAVSYTGAKPIFVEPD-IRTYNIDPSLIESAIT---EKTKAII---AVHLYGQPADMD---EIKRIAKK  149 (373)
T ss_dssp             EEETTSCTHHHHHHHHHSCEEEEECEE-TTTTEECGGGTGGGCC---TTEEEEE---EECCTTCCCCHH---HHHHHHHH
T ss_pred             EECCCCcHHHHHHHHHcCCEEEEEecc-ccccCcCHHHHHHhcC---CCCeEEE---EECCCcCcccHH---HHHHHHHH
Confidence            999999999999999999999999985 3567899999999886   4667766   689999987755   77777999


Q ss_pred             cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCc--cCcccCCCccceEEEecCCHHHHhhhhhhhHHHHH
Q 012238          261 KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVK  338 (467)
Q Consensus       261 ~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~  338 (467)
                      +|+++|+|++|.....-+  ....      .. ...+++.|||  |.++.+|. .|+++  +.++++.+.          
T Consensus       150 ~~~~li~D~a~~~g~~~~--~~~~------~~-~~d~~~~S~~~~K~l~~~g~-gg~~~--~~~~~~~~~----------  207 (373)
T 3frk_A          150 YNLKLIEDAAQAHGSLYK--GMKV------GS-LGDAAGFSFYPAKNLGSLGD-GGAVV--TNDKDLAEK----------  207 (373)
T ss_dssp             HTCEEEEECTTCTTCEET--TEET------TS-SSSEEEEECCTTSSSCCSSS-CEEEE--ESCHHHHHH----------
T ss_pred             cCCEEEEECCcccCCEEC--CEec------cc-cccEEEEeCcCCCccCccce-eEEEE--eCCHHHHHH----------
Confidence            999999999987533210  1111      00 1237788877  88874354 67774  566767666          


Q ss_pred             HHHHhhccCc------------cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcc
Q 012238          339 SQLKRLARPM------------YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS  406 (467)
Q Consensus       339 ~~l~~~~~~~------------~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~  406 (467)
                        ++......            ....+.+.+.+....+          +.+++..++.+++.+++.+.|+ +++    +.
T Consensus       208 --~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~-~~~----~~  270 (373)
T 3frk_A          208 --IKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKL----------KYLDKWNEERRKIAQKYIAGIN-NPN----VI  270 (373)
T ss_dssp             --HHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHH----------HTHHHHHHHHHHHHHHHHHHCC-CTT----EE
T ss_pred             --HHHHHhcCcccCCccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhc-cCc----eE
Confidence              33222211            1122333333222111          2244566667777788888887 654    22


Q ss_pred             ccc-CCcc---eEEe--cCCCHHHHHHHHHcccEEEeCC-----------------------------C--eEEec-cCC
Q 012238          407 FIL-RQIG---MFSF--TGLNKAQSDNMTNKWHVYMTKD-----------------------------G--RISLA-GLS  448 (467)
Q Consensus       407 ~~~-~~~g---~f~~--~~l~~~~~~~ll~~~gI~v~~g-----------------------------g--Ris~~-~~~  448 (467)
                      +.. +.+.   ++.+  ...+.+.+.+.|+++||.+.++                             +  ||++. ..+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t  350 (373)
T 3frk_A          271 IPVEADYAKHVWYTFVIRSEKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMK  350 (373)
T ss_dssp             CCCCCTTEECCCSSEEEEESSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCC
T ss_pred             eccCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCC
Confidence            221 1111   1111  1224555555555569988732                             1  66664 347


Q ss_pred             hhhHHHHHHHHHHHHH
Q 012238          449 LAKCEYLADAIIDSYH  464 (467)
Q Consensus       449 ~~~i~~~~~~l~~~l~  464 (467)
                      ++++++++++|++...
T Consensus       351 ~~di~~~~~~l~~~~~  366 (373)
T 3frk_A          351 NEEIEYVIDKINAWKL  366 (373)
T ss_dssp             HHHHHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            8999999999987654

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.90  E-value=1.3e-22  Score=203.04  Aligned_cols=211  Identities=16%  Similarity=0.121  Sum_probs=150.1

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~  199 (467)
                      +..+..++|+++|+++..       . ++++  +.+|++|++++  +. .+.+||+|+++.|+|.....    .++..|+
T Consensus        53 ~~~~~~~lr~~la~~~g~-------~-~~i~--~~sGt~a~~~a--l~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~  119 (393)
T 1n8p_A           53 QNPNRENLERAVAALENA-------Q-YGLA--FSSGSATTATI--LQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGV  119 (393)
T ss_dssp             CCHHHHHHHHHHHHHTTC-------S-EEEE--ESCHHHHHHHH--HH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCS
T ss_pred             CChhHHHHHHHHHHHhCC-------C-cEEE--ECChHHHHHHH--HH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence            556789999999999643       2 3444  46669999998  33 56799999999999985443    4567899


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc----CCeeEEeccCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK----NHIPFFDVAYQGFA  275 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~----~~~li~Deay~~~~  275 (467)
                      +++.++.+       | +.+++.++   ++++++++++|+||||.+++   +++|+++|+++    |+++|+|++|..+.
T Consensus       120 ~v~~v~~~-------d-~~l~~~i~---~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~  185 (393)
T 1n8p_A          120 ETSFTNDL-------L-NDLPQLIK---ENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPY  185 (393)
T ss_dssp             CCEEESSH-------H-HHHHHHSC---SSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHH
T ss_pred             EEEEeCCC-------h-HHHHHhcc---cCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccc
Confidence            99998762       6 88888886   57889999999999999997   55777779999    99999999988765


Q ss_pred             CCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCcc-ceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCch
Q 012238          276 SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPV  354 (467)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  354 (467)
                      ..    +..      .. ..++++.|+||.+|.+|+|+ ||++  +.++++++.            +...........+.
T Consensus       186 ~~----~~~------~~-~~di~~~S~sK~~g~~G~rigG~~~--~~~~~~~~~------------l~~~~~~~g~~~~~  240 (393)
T 1n8p_A          186 IS----NPL------NF-GADIVVHSATKYINGHSDVVLGVLA--TNNKPLYER------------LQFLQNAIGAIPSP  240 (393)
T ss_dssp             HC----CGG------GG-TCSEEEEETTTTTTCSSCCCCEEEE--ESCHHHHHH------------HHHHHHHHCCCCCH
T ss_pred             cC----CHH------Hc-CCeEEEEECcccccCCCCceeEEEE--eCCHHHHHH------------HHHHHHhcCCCCCH
Confidence            42    111      11 35689999999999999999 8875  446777776            33332222233444


Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          355 HGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       355 ~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      ..+.++...+..          +....++..++++.+.+.|+
T Consensus       241 ~~~~~~~~~l~~----------~~~~~~~~~~~~~~l~~~L~  272 (393)
T 1n8p_A          241 FDAWLTHRGLKT----------LHLRVRQAALSANKIAEFLA  272 (393)
T ss_dssp             HHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccch----------HHHHHHHHHHHHHHHHHHHH
Confidence            444444444432          22334444555666666776

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.90  E-value=1.7e-21  Score=197.33  Aligned_cols=214  Identities=12%  Similarity=0.106  Sum_probs=150.4

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~  199 (467)
                      +.....++|+.+++++..       ++.+++   .+|++++.++  +...+.+||+|+++.|+|..+...    ++..|+
T Consensus       112 ~~~~~~~l~~~lA~l~g~-------~~~v~~---~sG~~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~  179 (445)
T 1qgn_A          112 GNPTTVVLEEKISALEGA-------ESTLLM---ASGMCASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETILPKMGI  179 (445)
T ss_dssp             CCHHHHHHHHHHHHHHTC-------SEEEEE---SCHHHHHHHH--HHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred             CChHHHHHHHHHHHHhCC-------CcEEEe---CCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCC
Confidence            345567999999999643       234544   5566999997  444577999999999999877664    567899


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCc-EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGS-FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS  278 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~-~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~  278 (467)
                      +++.++.       .|++.+++.++   +++ +++++++|+||||.+.+.   ++|+++|+++|+++|+|++|.......
T Consensus       180 ~v~~v~~-------~d~~~l~~ai~---~~tv~lV~le~p~NptG~v~dl---~~I~~la~~~g~~livD~a~~~~~~~~  246 (445)
T 1qgn_A          180 TATVIDP-------ADVGALELALN---QKKVNLFFTESPTNPFLRCVDI---ELVSKLCHEKGALVCIDGTFATPLNQK  246 (445)
T ss_dssp             EEEEECS-------SCHHHHHHHHH---HSCEEEEEEESSCTTTCCCCCH---HHHHHHHHHTTCEEEEECTTTCTTTCC
T ss_pred             EEEEeCC-------CCHHHHHHHhc---cCCCCEEEEeCCCCCCCcccCH---HHHHHHHHHcCCEEEEECCCcccccCC
Confidence            9888876       28999999998   467 899999999999999985   477777999999999999987543221


Q ss_pred             CCCChhHHHHHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHH
Q 012238          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGA  357 (467)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  357 (467)
                          .  .    .. ...+++.|+||.++..| .++||++   .++++++.            +...........+.+..
T Consensus       247 ----~--~----~~-g~Div~~S~sK~~gg~gd~~~G~l~---~~~~l~~~------------l~~~~~~~g~~~~~~~a  300 (445)
T 1qgn_A          247 ----A--L----AL-GADLVLHSATKFLGGHNDVLAGCIS---GPLKLVSE------------IRNLHHILGGALNPNAA  300 (445)
T ss_dssp             ----T--T----TT-TCSEEEECTTTTTTCSSSCCCEEEE---ECHHHHHH------------HHHHHHHHCCCCCHHHH
T ss_pred             ----c--c----cc-CCEEEEECCcccccccccceEEEEE---ECHHHHHH------------HHHHHHHhCCCCCHHHH
Confidence                1  1    11 24588999999999666 4789985   67777776            33332222233444443


Q ss_pred             HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       358 ~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                      .++...++.          +....+++.++++.+.+.|+ +.
T Consensus       301 ~~~~~~l~~----------l~~r~~~~~~~a~~l~~~L~-~~  331 (445)
T 1qgn_A          301 YLIIRGMKT----------LHLRVQQQNSTALRMAEILE-AH  331 (445)
T ss_dssp             HHHHHHGGG----------HHHHHHHHHHHHHHHHHHHH-TC
T ss_pred             HHHHHhHHH----------HHHHHHHHHHHHHHHHHHHh-cC
Confidence            443333321          23344555566777888887 54

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.89  E-value=9.3e-23  Score=204.55  Aligned_cols=317  Identities=9%  Similarity=-0.001  Sum_probs=197.5

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC-CcCCCC--cchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~-~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +..++|+.|.+       .+++.+++++.+....... ..+.+.  ....++|+.++++++..     .+++|++ .|+|
T Consensus        39 ~~~~~~~~~~~-------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-----~~~~i~~-~t~g  105 (398)
T 2fyf_A           39 PRDGRFGSGPS-------KVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLP-----DGYEVIL-GNGG  105 (398)
T ss_dssp             CSSCBCCSSSC-------CCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCC-----TTCEEEE-EETC
T ss_pred             cCCccccCCCC-------CCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCC-----CCceEEE-eCCc
Confidence            46778876532       2377888887663111000 122232  23577888888886432     1346542 2799


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcc-hHHHHhhC--CCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeC
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGN-HKNIFNDA--RVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG  236 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~-~~~~~~~~--G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~  236 (467)
                      |+++++++  +...+.+| .+.+..+.|.. ....+...  |++++.++.+  ++...+.+     +.   +++++++++
T Consensus       106 ~t~al~~~--~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~~~~~-----i~---~~~~~v~~~  172 (398)
T 2fyf_A          106 ATAFWDAA--AFGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITSD--PGSAPEPQ-----TD---PSVDVIAWA  172 (398)
T ss_dssp             HHHHHHHH--HHHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEECC--TTCCCCCC-----CC---TTCSEEEEE
T ss_pred             hhHHHHHH--HHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEecC--CCCCCCcc-----cc---CCCCEEEEe
Confidence            99999998  44445676 23333333321 12244555  8899999874  23333321     22   567788889


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceE
Q 012238          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (467)
Q Consensus       237 ~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~  316 (467)
                      +|+||||.+++.+++.++      +|+++|+|++|..+...   .+   +    ..  ..+++.|+||.++++| ++||+
T Consensus       173 ~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~~~~---~~---~----~~--~di~~~s~sK~~~~~g-g~g~l  233 (398)
T 2fyf_A          173 HNETSTGVAVAVRRPEGS------DDALVVIDATSGAGGLP---VD---I----AE--TDAYYFAPQKNFASDG-GLWLA  233 (398)
T ss_dssp             SEETTTTEECCCCCCTTC------C-CEEEEECTTTTTTSC---CC---G----GG--CSEEEECTTSTTCSCS-SEEEE
T ss_pred             CcCCCcceecchHHhhhh------cCCeEEEEeccccCCcc---cC---c----cc--CcEEEEecCcccCCCC-ceEEE
Confidence            999999999998877665      89999999998765432   11   1    11  3478999999999876 58998


Q ss_pred             EEecCCHHHHhhhhhhhHHHHHHH----------------HHhh-ccCccCCCchHHHHHHHHHhCChhhHHHHHHH--H
Q 012238          317 NVVCSSSDLAARCCEVAVIQVKSQ----------------LKRL-ARPMYSNPPVHGARIVANVVGNPALFDEWKAE--M  377 (467)
Q Consensus       317 ~~v~~~~~~~~~~~~~~~~~~~~~----------------l~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~--l  377 (467)
                      +   .++++++.        +...                .+.. ....+.+++...+.++..+|+.  +    .+.  +
T Consensus       234 ~---~~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~--~----~~~g~~  296 (398)
T 2fyf_A          234 I---MSPAALSR--------IEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDW--L----VGNGGL  296 (398)
T ss_dssp             E---ECHHHHHH--------HHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH--H----HHHTSH
T ss_pred             E---ECHHHHHH--------hhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHH--H----HHccCH
Confidence            5   67777765        2110                0000 0112334555555555555431  1    222  6


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCccccc--C--CcceEEecC----CCH-HHHHHHHHcccEEEeCC------C--
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL--R--QIGMFSFTG----LNK-AQSDNMTNKWHVYMTKD------G--  440 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~--~--~~g~f~~~~----l~~-~~~~~ll~~~gI~v~~g------g--  440 (467)
                      ++++++++++++++.+.|+ +++   ++++..  +  .+++++|+.    .+. ++.+.|.+ +||.+.+|      +  
T Consensus       297 ~~~~~~~~~~~~~l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~g~~~~~~~~i  371 (398)
T 2fyf_A          297 DWAVKRTADSSQRLYSWAQ-ERP---YTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRA-NGIVDTEPYRKLGRNQL  371 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HST---TEEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHHH-TTCBCCSCCTTTCSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHH-HcC---CceeccCChhhcCCcEEEEECCCCCCHHHHHHHHHH-CCcEEecCcccCCCCEE
Confidence            7788999999999999998 762   145552  3  345466653    344 44556655 49999874      2  


Q ss_pred             eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          441 RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ||+++. .+++++++++++|+++++++
T Consensus       372 Ris~~~~~t~e~i~~~~~~l~~~l~~~  398 (398)
T 2fyf_A          372 RVAMFPAVEPDDVSALTECVDWVVERL  398 (398)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHHHHTC
T ss_pred             EEEecCCCCHHHHHHHHHHHHHHHHhC
Confidence            999984 37899999999999998764

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.89  E-value=1.1e-21  Score=200.36  Aligned_cols=287  Identities=13%  Similarity=-0.006  Sum_probs=185.8

Q ss_pred             HHHHHHHHHHHhCCCCcccccCceeeeecCCchh-HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeee
Q 012238          129 AAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG-SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY  207 (467)
Q Consensus       129 ~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~-al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~  207 (467)
                      .++|+.++++++..      ++ +++  |+|||+ ++.++...+....+|+.|+++++.|..+...++..|++++.++..
T Consensus       136 ~~~~~~la~~~g~~------~~-~~~--t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~  206 (456)
T 2z67_A          136 NKILESFFKQLGLN------VH-AIA--TPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETV  206 (456)
T ss_dssp             HHHHHHHHHHTTCC------CE-EEE--ESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCE
T ss_pred             HHHHHHHHHHcCCC------CC-EEE--eCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEe
Confidence            34556666664322      33 777  999995 444331111111267789999999999999999999999998864


Q ss_pred             c-CCCCCCChhhHHHHH-HcC-CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChh
Q 012238          208 D-PKTVGLDFEGMIADI-KAA-PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS  284 (467)
Q Consensus       208 ~-~~~~~~d~~~l~~~l-~~~-~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~  284 (467)
                      + ++++.+|++.+++.+ +.. ..+++++++++||||||.+.+.+   +|+++|+++|+++++|++|..+..+.   ...
T Consensus       207 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~---~I~~la~~~g~~v~vD~A~~~~~~g~---~~~  280 (456)
T 2z67_A          207 LDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIV---EIAKICENYDIPHIINGAYAIQNNYY---LEK  280 (456)
T ss_dssp             EETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHH---HHHHHHHHHTCCEEEECTTTTTCHHH---HHH
T ss_pred             ccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHH---HHHHHHHHcCCcEEEECcchHHHHHh---hHH
Confidence            2 346789999999999 420 13677888899999999997755   66777999999999999998776421   001


Q ss_pred             HHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHh
Q 012238          285 SVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVV  364 (467)
Q Consensus       285 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L  364 (467)
                      .. .....+ ..+++.|++|.++ .++++||++  +.++++++.            +...........+.+.+.++...+
T Consensus       281 ~~-~~~~~~-~D~~~~s~hK~~~-~p~g~G~l~--~~~~~~~~~------------l~~~~~g~~~~~~~~~~~aal~~l  343 (456)
T 2z67_A          281 LK-KAFKYR-VDAVVSSSDKNLL-TPIGGGLVY--STDAEFIKE------------ISLSYPGRASATPVVNTLVSLLSM  343 (456)
T ss_dssp             HH-HHHTSC-CSEEEEEHHHHHC-CCSSCEEEE--ESCHHHHHH------------HHTTSCSCBCSHHHHHHHHHHHHH
T ss_pred             HH-HhhCCC-CCEEEEcCCCCcC-CCCCeEEEE--EcCHHHHhh------------cCcCCCCCCCCCHHHHHHHHHHHH
Confidence            11 111112 3357889999765 568899996  446777666            432222111122233444433332


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CCCCCcccccCCcceEEecCC--C---HHHHHHHHHcccE-
Q 012238          365 GNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD----KSGKDWSFILRQIGMFSFTGL--N---KAQSDNMTNKWHV-  434 (467)
Q Consensus       365 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~----g~~~~~~~~~~~~g~f~~~~l--~---~~~~~~ll~~~gI-  434 (467)
                      .        .+.++++.+++.++++++.+.|+ ++    |    +.+..++ +++.| .+  +   .++.++|.++ || 
T Consensus       344 ~--------~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~g----~~v~~~~-~~v~~-~~~~~~~~~~l~~~L~~~-gi~  407 (456)
T 2z67_A          344 G--------SKNYLELVKNQKNSKKLLDELLN-DLSKKTG----GKFLDVE-SPIAS-CISVNSDPVEIAAKLYNL-RVT  407 (456)
T ss_dssp             H--------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHSS----CCBCCCC-CSSEE-EEECSSCHHHHHHHHHHT-TEE
T ss_pred             H--------HHHHHHHHHHHHHHHHHHHHHHH-hcccccC----CEecCCC-CeEEE-EEecccHHHHHHHHHHHc-CCC
Confidence            1        23366788888999999999998 76    5    3555555 43332 22  2   3555566554 64 


Q ss_pred             --EEe--------------CCC--eEEecc-CChhhHHHHHHHHHHHH
Q 012238          435 --YMT--------------KDG--RISLAG-LSLAKCEYLADAIIDSY  463 (467)
Q Consensus       435 --~v~--------------~gg--Ris~~~-~~~~~i~~~~~~l~~~l  463 (467)
                        -+.              +.+  |+|++. .+++++++++++|++++
T Consensus       408 ~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          408 GPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             SCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred             cceEEeecCccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence              343              223  888773 38899999999998765

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.89  E-value=2.1e-21  Score=193.27  Aligned_cols=309  Identities=12%  Similarity=-0.027  Sum_probs=197.3

Q ss_pred             CCCCchHHHHHHHHHHHhcCCCCcCCC-CcchHHHHHHH-HHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-h
Q 012238           98 LQPYVLDVVKKAENLMLERGENKEYLP-IEGLAAFNKVT-AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-Y  174 (467)
Q Consensus        98 ~~p~~~~~v~~a~~~~~~~~~~~~Y~~-~~G~~~lr~ai-a~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~  174 (467)
                      .+++ ++.+.+++.+.+..+.   |.+ .....+|++++ |+++. .      .+++++  ++||++|+.++  +... +
T Consensus        11 ~~~~-~~~i~~a~~~~~~~~~---~~~~~~~~~~l~~~~~a~~~g-~------~~~~v~--~~sgt~al~~a--l~~l~~   75 (377)
T 3ju7_A           11 STVP-VIEYLDELKEIDASHI---YTNYGPINQRFEQTIMSGFFQ-N------RGAVTT--VANATLGLMAA--IQLKKR   75 (377)
T ss_dssp             CCCC-GGGGHHHHHHHHHHTC---CSSSCHHHHHHHHHHHHHTST-T------CSEEEE--ESCHHHHHHHH--HHHHSC
T ss_pred             CCCC-cHHHHHHHHHHHHcCC---cccCCHHHHHHHHHHHHHHhC-C------CCeEEE--eCCHHHHHHHH--HHHcCC
Confidence            4444 7778888888876654   332 35688999999 99964 1      346767  89999999997  4444 6


Q ss_pred             CCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCC--cEEEEeCCCCCCCCCCCCHHHHH
Q 012238          175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG--SFILLHGCAHNPTGIDPTPEQWE  252 (467)
Q Consensus       175 ~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~--~~~i~i~~p~NPTG~~~~~~~l~  252 (467)
                      .|||+|+++.|+|..+...++..|++++.++++ ++++.+|++.+++++..  ++  +++++   |+||||...+.+   
T Consensus        76 ~~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~~--~~~~tk~v~---~~~~~G~~~~~~---  146 (377)
T 3ju7_A           76 KKGKYALMPSFTFPATPLAAIWCGLEPYFIDIS-IDDWYMDKTVLWDKIEE--LKEEVAIVV---PYATFGSWMNLE---  146 (377)
T ss_dssp             TTCCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCHHHHHHHHHH--HGGGEEEEC---CBCGGGBCCCCH---
T ss_pred             CCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC-CccCCcCHHHHHHHHhc--CCCCceEEE---EECCCCCccCHH---
Confidence            799999999999999999999999999999984 45788999999999832  34  77776   678999988755   


Q ss_pred             HHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhh
Q 012238          253 KIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEV  332 (467)
Q Consensus       253 ~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~  332 (467)
                      +|.++|+ +|+++|+|+++.......   .. .+.  ....+-.++..+.+|.++. | +.|+++  +.+++++++    
T Consensus       147 ~i~~la~-~~~~vi~D~a~a~g~~~~---~~-~~g--~~~~d~~~~S~~~~K~l~~-g-~gG~~~--~~~~~l~~~----  211 (377)
T 3ju7_A          147 EYEELEK-KGVPVVVDAAPGFGLMNG---GM-HYG--QDFSGMIIYSFHATKPFGI-G-EGGLIY--SKNEEDIQR----  211 (377)
T ss_dssp             HHHHHHH-TTCCBEEECTTCTTCEET---TE-ETT--TTCSSEEEEECBTTSSSCC-B-SCEEEE--ESCHHHHHH----
T ss_pred             HHHHHHh-cCCEEEEECCCccCCeEC---CE-ecc--CCCCcEEEEECCCCCcCCC-C-CcEEEE--ECCHHHHHH----
Confidence            6666688 999999999976432210   00 000  0012233334445699984 5 567764  678888776    


Q ss_pred             hHHHHHHHHHhhccC------------ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          333 AVIQVKSQLKRLARP------------MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       333 ~~~~~~~~l~~~~~~------------~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                              ++.+...            .....+.+.+.++...|          +.++...++.+++++.+.+.|+ .++
T Consensus       212 --------~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l----------~~l~~~~~~~~~~~~~~~~~L~-~~~  272 (377)
T 3ju7_A          212 --------IKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATM----------KKWDDKLKERTRISEWYKQLLQ-SNG  272 (377)
T ss_dssp             --------HHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHH----------HTHHHHHHHHHHHHHHHHHHHH-HTT
T ss_pred             --------HHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence                    4433321            11234444433332222          2244556666677777777787 654


Q ss_pred             CCCCcccccCCc--ce--E-Ee-cC--CCHHHHHHHHHcccEEEeCC----------------C-------------eEE
Q 012238          401 SGKDWSFILRQI--GM--F-SF-TG--LNKAQSDNMTNKWHVYMTKD----------------G-------------RIS  443 (467)
Q Consensus       401 ~~~~~~~~~~~~--g~--f-~~-~~--l~~~~~~~ll~~~gI~v~~g----------------g-------------Ris  443 (467)
                      .-. +.+.+..+  .+  | .+ .+  .+.+.+.+.|+++||.+..+                +             ||.
T Consensus       273 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp  351 (377)
T 3ju7_A          273 LMK-KGWQLQKTEAVIQQFMPILCPEEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLP  351 (377)
T ss_dssp             TTT-TTCBCCCCSCBCCSSEEEECCTTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEEC
T ss_pred             Ccc-ccccCCCCCcceEEEEEEEeCChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECC
Confidence            100 11111111  11  1 11 12  12566666666679987553                0             555


Q ss_pred             ec-cCChhhHHHHHHHHHHHHHh
Q 012238          444 LA-GLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       444 ~~-~~~~~~i~~~~~~l~~~l~~  465 (467)
                      +. .+++++++++++.|++++..
T Consensus       352 ~~~~~t~~di~~v~~~l~~~~~~  374 (377)
T 3ju7_A          352 LWEGMTKEIVEQIVICLGQKVVS  374 (377)
T ss_dssp             CCTTCCHHHHHHHHHHHTC----
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhc
Confidence            44 45889999999999887754

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.88  E-value=6.7e-21  Score=196.67  Aligned_cols=321  Identities=12%  Similarity=0.060  Sum_probs=210.2

Q ss_pred             chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCce-eeeecCCchhHHHHHHHHHHHhCC----
Q 012238          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRV-ATVQGLSGTGSLRLAAALIERYFP----  176 (467)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i-~~~~t~ggt~al~l~~~~l~~~~~----  176 (467)
                      +++.+.+++.+.++.+. ..|....+..++++.+.+++....|.+.+++++ ..+.|+||++++.++  ++....+    
T Consensus        68 ~~~~v~~~l~~~~~~~~-~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a--~~a~~~~~~~~  144 (502)
T 3hbx_A           68 MEPECDKLIMSSINKNY-VDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLA--GLAFKRKWQNK  144 (502)
T ss_dssp             CCHHHHHHHHHTTTCBT-TCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHH--HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhccCC-CChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHH--HHHHHHHHhHH
Confidence            47888888888775532 334445566777766666665555544323333 222379999999987  3333333    


Q ss_pred             ----CC-----EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q 012238          177 ----GA-----KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPT  247 (467)
Q Consensus       177 ----gd-----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~  247 (467)
                          |+     +|+++.++|..+...++..|++++.+|++ ++++.+|++.+++.++   +++++|++++|+||||.+.+
T Consensus       145 ~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG~~~~  220 (502)
T 3hbx_A          145 RKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLS-EGYYVMDPQQAVDMVD---ENTICVAAILGSTLNGEFED  220 (502)
T ss_dssp             HHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCB-TTBCSCCHHHHHHHCC---TTEEEEEEEBSCTTTCCBCC
T ss_pred             HHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecC-CCcCcCCHHHHHHHHh---hCCEEEEEecCCCCCCcccC
Confidence                76     99999999999999999999999999984 3458899999999997   57788999999999999977


Q ss_pred             HHHHHHHHHHHHhc------CCeeEEeccCCCCC----CCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          248 PEQWEKIADVIQEK------NHIPFFDVAYQGFA----SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       248 ~~~l~~l~~~~~~~------~~~li~Deay~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                      .+   +|.++|+++      |+++++|++|.++.    .+....+   +    ....-.++..|.+|.++ .+.++||++
T Consensus       221 l~---~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~---~----~~~~~D~v~~s~hK~l~-~p~g~G~~~  289 (502)
T 3hbx_A          221 VK---LLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWD---F----RLPLVKSINVSGHKYGL-VYAGIGWVI  289 (502)
T ss_dssp             HH---HHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS---T----TSTTEEEEEEETTTTTC-CCSSCEEEE
T ss_pred             HH---HHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccc---c----CCCCceEEEECcccccC-CCCCeEEEE
Confidence            66   566668888      99999999998664    2211110   0    11234566788899775 567789986


Q ss_pred             EecCCHHHHhhhhhhhHHHHHHHHHhhccCc-----------cCCC--chHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012238          318 VVCSSSDLAARCCEVAVIQVKSQLKRLARPM-----------YSNP--PVHGARIVANVVGNPALFDEWKAEMEMMAGRI  384 (467)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~--~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~  384 (467)
                        +.+++.+..            .......+           .+.+  ..+++.++...+.        .+.+.++.++.
T Consensus       290 --~~~~~~l~~------------~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg--------~~g~~~~~~~~  347 (502)
T 3hbx_A          290 --WRNKEDLPE------------ELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG--------HEGYRNVMENC  347 (502)
T ss_dssp             --ESSGGGSCG------------GGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred             --EeCHHHhhH------------HhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence              466554432            11111110           1111  2233333322221        23356777888


Q ss_pred             HHHHHHHHHHhhhccCCCCCcccccC--CcceEEec--C---CCHHHHHHHHHcccEEEe----CC---C----eEEecc
Q 012238          385 KNVRQKLFDSLSAKDKSGKDWSFILR--QIGMFSFT--G---LNKAQSDNMTNKWHVYMT----KD---G----RISLAG  446 (467)
Q Consensus       385 ~~~r~~l~~~l~~~~g~~~~~~~~~~--~~g~f~~~--~---l~~~~~~~ll~~~gI~v~----~g---g----Ris~~~  446 (467)
                      .++++++.+.|+ +++.   +++..+  ..++++|.  +   ++...+.+.|.++||.+.    |.   +    ||+++.
T Consensus       348 ~~~a~~l~~~L~-~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~  423 (502)
T 3hbx_A          348 RENMIVLREGLE-KTER---FNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIRE  423 (502)
T ss_dssp             HHHHHHHHHHHH-TTTC---EEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCT
T ss_pred             HHHHHHHHHHHH-hCCC---EEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCC
Confidence            888889999998 7752   555544  44544432  2   344344444445698753    21   2    998874


Q ss_pred             -CChhhHHHHHHHHHHHHHhc
Q 012238          447 -LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       447 -~~~~~i~~~~~~l~~~l~~~  466 (467)
                       .+.++++.+++.|+++++.+
T Consensus       424 ~~t~edid~li~~L~~~l~~l  444 (502)
T 3hbx_A          424 DFSRTLAERLVIDIEKVMREL  444 (502)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHH
Confidence             36799999999999988754

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.88  E-value=4.8e-21  Score=193.42  Aligned_cols=159  Identities=13%  Similarity=0.033  Sum_probs=126.7

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~  199 (467)
                      +.....+|++.+++++...        ..++  +.+|++|+.++  +...+.+||+|++++|+|..+..    .++..|+
T Consensus        80 ~~p~~~~le~~lA~l~g~~--------~~v~--~~sG~~Ai~~a--l~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~  147 (430)
T 3ri6_A           80 SNPTVEDLEQRLKNLTGAL--------GVLA--LGSGMAAISTA--ILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGI  147 (430)
T ss_dssp             CCHHHHHHHHHHHHHHTCS--------EEEE--ESCHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHCCC--------cEEE--ECCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCC
Confidence            5677899999999996432        2444  57788999987  45567899999999999988777    6678999


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~  279 (467)
                      +++.++..       |++.++++++   ++++++++++|+||||.+.+.+   +|+++|+++|+++|+|++|......  
T Consensus       148 ~~~~v~~~-------d~~~l~~ai~---~~t~~v~~e~p~NptG~~~dl~---~i~~la~~~g~~livD~a~~~~~~~--  212 (430)
T 3ri6_A          148 EVRFVDVM-------DSLAVEHACD---ETTKLLFLETISNPQLQVADLE---ALSKVVHAKGIPLVVDTTMTPPYLL--  212 (430)
T ss_dssp             EEEEECTT-------CHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHH---HHHHHHHTTTCCEEEECTTSCTTTC--
T ss_pred             EEEEeCCC-------CHHHHHHhhC---CCCeEEEEECCCCCCCeecCHH---HHHHHHHHcCCEEEEECCCcccccC--
Confidence            99998762       8999999987   5789999999999999999855   7777799999999999998754432  


Q ss_pred             CCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEE
Q 012238          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (467)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (467)
                        ...      .. ...+++.|+||.++.+|..+|.+++
T Consensus       213 --~~~------~~-g~div~~S~sK~l~g~g~~~gG~vv  242 (430)
T 3ri6_A          213 --EAK------RL-GVDIEVLSSTKFISGGGTSVGGVLI  242 (430)
T ss_dssp             --CGG------GG-TCSEEEEECCCEEETTEEECCEEEE
T ss_pred             --ChH------Hc-CCEEEEECCcccccCCCCceEEEEE
Confidence              111      11 2358899999999988877888863

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.88  E-value=4.4e-21  Score=192.21  Aligned_cols=215  Identities=16%  Similarity=0.116  Sum_probs=154.7

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-----hhCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-----NDAR  198 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~-----~~~G  198 (467)
                      +.....+|++.++++...        +++++  +++|++|+.++   +..+.+||+|+++.|+|......+     +..|
T Consensus        65 ~~p~~~~l~~~la~l~g~--------~~~~~--~~sG~~Ai~~~---~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g  131 (400)
T 3nmy_A           65 HNPTRFAYERCVAALEGG--------TRAFA--FASGMAATSTV---MELLDAGSHVVAMDDLYGGTFRLFERVRRRTAG  131 (400)
T ss_dssp             CCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH---HTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhCC--------CCEEE--ecCHHHHHHHH---HHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcC
Confidence            455678899999998643        24555  67789999874   556779999999999998555543     3459


Q ss_pred             CCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCC
Q 012238          199 VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS  278 (467)
Q Consensus       199 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~  278 (467)
                      ++++.++.       .|++.+++.++   ++++++++++|+||||.+++   +++|+++|++||+++|+|++|.......
T Consensus       132 ~~~~~v~~-------~d~~~l~~~i~---~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~  198 (400)
T 3nmy_A          132 LDFSFVDL-------TDPAAFKAAIR---ADTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR  198 (400)
T ss_dssp             CEEEEECT-------TSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC
T ss_pred             eEEEEECC-------CCHHHHHHHhc---cCCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence            99888876       28899999987   57889999999999999997   6678888999999999999986433211


Q ss_pred             CCCChhHHHHHHhcCCeEEEEecCccCcccCCCccce-EEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHH
Q 012238          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA-MNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGA  357 (467)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~-~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  357 (467)
                            +.    .. ..++++.|+||.++.+|.++|+ ++ ++.++++++.            +...........+...+
T Consensus       199 ------~~----~~-g~div~~S~sK~l~g~g~~~gG~~v-v~~~~~~~~~------------l~~~~~~~g~~~~~~~a  254 (400)
T 3nmy_A          199 ------PL----SL-GADLVVHSATKYLNGHSDMVGGIAV-VGDNAELAEQ------------MAFLQNSIGGVQGPFDS  254 (400)
T ss_dssp             ------GG----GG-TCSEEEEETTTTTTCSSSCCCEEEE-ECSCHHHHHH------------HHHHHHHHCCBCCHHHH
T ss_pred             ------hh----hc-CCcEEEecCccccCCCCCcceeEEE-EeCCHHHHHH------------HHHHHHhcCCCCCHHHH
Confidence                  11    11 3468899999999989999988 43 4678887776            44333333344555555


Q ss_pred             HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       358 ~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                      .++...++.          +....++..++...+.+.|+ +.
T Consensus       255 ~~~l~~l~~----------l~~r~~~~~~~a~~l~~~L~-~~  285 (400)
T 3nmy_A          255 FLALRGLKT----------LPLRMRAHCENALALAQWLE-TH  285 (400)
T ss_dssp             HHHHHHHTT----------HHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHhHhH----------HHHHHHHHHHHHHHHHHHHH-cC
Confidence            555444432          33445566677777888887 54

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.88  E-value=1.4e-21  Score=194.71  Aligned_cols=300  Identities=11%  Similarity=0.072  Sum_probs=191.3

Q ss_pred             hHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH--HHHhhCCC--CeEE
Q 012238          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK--NIFNDARV--PWSE  203 (467)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~--~~~~~~G~--~~~~  203 (467)
                      ..++++.+++++..       .+.+++  |+|||++++++   +..+.+||+|++++++|..+.  ..++..|.  +++.
T Consensus        37 ~~~~~~~l~~~~~~-------~~~v~~--~~sgt~a~~~~---~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~  104 (379)
T 3ke3_A           37 MNDLLSNLKTVYNA-------EAAVII--PGSGTYGMEAV---ARQLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTV  104 (379)
T ss_dssp             HHHHHHHHHHHHTC-------SEEEEE--ESCHHHHHHHH---HHHHCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEE
T ss_pred             HHHHHHHHHHHhCC-------CCEEEE--cCChhHHHHHH---HHhCCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEE
Confidence            34567777777533       246777  89999999997   345679999999999997643  45555664  6677


Q ss_pred             eeeecC------CC-CCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238          204 YRYYDP------KT-VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS  276 (467)
Q Consensus       204 v~~~~~------~~-~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~  276 (467)
                      ++.+..      .. ..+|++.+++.+++  .+++++++++++||||.+++.+++++|.++|++||+++|+|+++.  . 
T Consensus       105 ~~~~~~g~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~--g-  179 (379)
T 3ke3_A          105 LTAERTEDTEAPKPFAPVDIETAVAKIKE--DKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS--G-  179 (379)
T ss_dssp             EECEESSCCSSCCCEECCCHHHHHHHHHH--HTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC--T-
T ss_pred             EeccccccccccCCCCCCCHHHHHHHHhh--cCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc--C-
Confidence            766321      01 25899999999963  255678888999999999999999999999999999999999964  2 


Q ss_pred             CCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhh----hhH---HHHHH---HHHhhcc
Q 012238          277 GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCE----VAV---IQVKS---QLKRLAR  346 (467)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~----~~~---~~~~~---~l~~~~~  346 (467)
                       ....+..      .. .-.+++.|++|.++.+ .++|+++   .++++++.-..    +.+   .....   ......+
T Consensus       180 -~~~~~~~------~~-~~d~~~~s~~K~l~~~-~g~g~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~  247 (379)
T 3ke3_A          180 -CVWLDMK------EL-GIDVLISAPQKGWSST-PCAGLVM---LSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGH  247 (379)
T ss_dssp             -TCCCCHH------HH-TCSEEEECTTTTTCSC-CCEEEEE---ECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSC
T ss_pred             -Ccccccc------cc-CCCEEEecchhhcCCC-CceEEEE---ECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCC
Confidence             1112211      11 2357789999988633 4478885   66777665000    000   00000   0000011


Q ss_pred             CccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC---cc-eEEecCCCH
Q 012238          347 PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ---IG-MFSFTGLNK  422 (467)
Q Consensus       347 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~---~g-~f~~~~l~~  422 (467)
                      .+...++...+.++..+|..  + .  +..++++.++++++++++.+.|+ ++|+    ++..+.   .+ ...+..-+.
T Consensus       248 ~~~~t~~~~~~~a~~aal~~--~-~--~~g~~~~~~~~~~l~~~l~~~l~-~~g~----~~~~~~~~~~~~i~~~~~~~~  317 (379)
T 3ke3_A          248 AYHATMPTDSLRQFRDAILE--A-K--EIGFDILRDAQWELGNRVRKVLT-DKGI----ESVAAEGFEAPGVVVSYTERD  317 (379)
T ss_dssp             CCSSCCCHHHHHHHHHHHHH--H-H--HHCHHHHHHHHHHHHHHHHHHHH-HTTC----CBSBCTTCBCSSEEEEECSCH
T ss_pred             CCCCCCCHHHHHHHHHHHHH--H-H--HhcHHHHHHHHHHHHHHHHHHHH-HcCC----EecCCccccCceEEEEccCCc
Confidence            11124455454444444421  1 1  12257888889999999999999 8774    444332   22 122222123


Q ss_pred             HH-HHHHHHcccEEEeCC----------C---eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          423 AQ-SDNMTNKWHVYMTKD----------G---RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       423 ~~-~~~ll~~~gI~v~~g----------g---Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +. ..+.|+++||.+.+|          +   ||++.. .+++++++++++|+++++++
T Consensus       318 ~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~  376 (379)
T 3ke3_A          318 DMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEV  376 (379)
T ss_dssp             HHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHh
Confidence            33 134455579988765          3   888753 37799999999999998764

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.88  E-value=2.6e-21  Score=199.16  Aligned_cols=328  Identities=10%  Similarity=-0.004  Sum_probs=211.9

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccc-------cCceeeeecCCchhHHHHHHHHHHH-h
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK-------EQRVATVQGLSGTGSLRLAAALIER-Y  174 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~-------~~~i~~~~t~ggt~al~l~~~~l~~-~  174 (467)
                      +..+.+++...++.+. ..|....+..++++.+++++....|.+.+       ...+++  |.|||+|+.++...... .
T Consensus        87 ~~~~~~~~~~~~n~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~--t~ggTeA~~~al~~~~~~~  163 (486)
T 1js3_A           87 PAMLADMLCGAIGCIG-FSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVI--QGSASEATLVALLAARTKV  163 (486)
T ss_dssp             HHHHHHHHHHHHCCCC-SSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEE--ESCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCc-cccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEE--cCCcHHHHHHHHHHHHHHH
Confidence            5667888888776543 66777777889998888887665554421       245677  89999999887322211 1


Q ss_pred             CC------CC----------EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC---CCcEEEEe
Q 012238          175 FP------GA----------KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP---GGSFILLH  235 (467)
Q Consensus       175 ~~------gd----------~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~i~i  235 (467)
                      .+      ||          .|+++.++|..+...++..|++++.+|++  +++.+|++.|++.+++..   ..+.++++
T Consensus       164 ~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~~p~~vv~  241 (486)
T 1js3_A          164 VRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVA  241 (486)
T ss_dssp             HHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             hhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecC--CCCCCCHHHHHHHHHHHHhCCCCceEEEE
Confidence            11      42          38889999999999999999999999983  578899999999997421   12358888


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccce
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  315 (467)
                      ++|+||||.+-   ++++|+++|++||+++++|++|.++.....+... .+.. .. +-+ .++.|++|.++.| +++||
T Consensus       242 ~~~~n~tG~~~---~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~-~~~g-~~-~ad-si~~~~hK~~~~p-~~~G~  313 (486)
T 1js3_A          242 TLGTTSCCSFD---NLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRH-LLNG-VE-FAD-SFNFNPHKWLLVN-FDCSA  313 (486)
T ss_dssp             EBSCTTTCCBC---CHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGG-GGTT-GG-GCS-EEEECHHHHSSCC-SSCEE
T ss_pred             eCCCCCCCCCC---CHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHH-HhcC-cc-ccC-eeEEchhhhcCCC-cceEE
Confidence            99999999874   4668888899999999999999876532111111 0000 11 123 4457889999866 89999


Q ss_pred             EEEecCCHHH-HhhhhhhhHHHHH---HHHHhhcc-------------CccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          316 MNVVCSSSDL-AARCCEVAVIQVK---SQLKRLAR-------------PMYSNPPVHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       316 ~~~v~~~~~~-~~~~~~~~~~~~~---~~l~~~~~-------------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                      ++  +.+++. .+.        +.   ..+.....             ........+.+.++...+.        .+.++
T Consensus       314 l~--~~~~~~l~~~--------~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g--------~~g~~  375 (486)
T 1js3_A          314 MW--VKRRTDLTGA--------FKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG--------VKGLQ  375 (486)
T ss_dssp             EE--ESCHHHHHGG--------GC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH--------HHHHH
T ss_pred             EE--EeCHHHHHHH--------hcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHh--------HHHHH
Confidence            96  566654 333        10   00100000             0000122344444433321        23366


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccc-cCCcceEEec--CC---CHHHHHHHHHcccEE-EeCC---C----eEEe
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFI-LRQIGMFSFT--GL---NKAQSDNMTNKWHVY-MTKD---G----RISL  444 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~-~~~~g~f~~~--~l---~~~~~~~ll~~~gI~-v~~g---g----Ris~  444 (467)
                      ++.+++.++++++.+.|+ +.+   ++++. ++..+++.|.  +.   +.++.+++.++ |+. +.++   |    |+++
T Consensus       376 ~~~~~~~~~a~~l~~~L~-~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~lRi~~  450 (486)
T 1js3_A          376 AYIRKHVQLSHEFEAFVL-QDP---RFEVCAEVTLGLVCFRLKGSDGLNEALLERINSA-RKIHLVPCRLRGQFVLRFAI  450 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HCT---TEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHH-TSCBCEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHh-cCC---CeEEeCCCceeEEEEEecChHHHHHHHHHHHHhc-CCEEEEEEEECCEEEEEEEe
Confidence            778888889999999998 752   15554 3566666553  22   23445666655 643 3332   2    9998


Q ss_pred             ccC--ChhhHHHHHHHHHHHHHhc
Q 012238          445 AGL--SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       445 ~~~--~~~~i~~~~~~l~~~l~~~  466 (467)
                      +..  +++++++++++|+++++++
T Consensus       451 ~~~~~t~~di~~~~~~l~~~~~~~  474 (486)
T 1js3_A          451 CSRKVESGHVRLAWEHIRGLAAEL  474 (486)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH
Confidence            642  6789999999999987653

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.88  E-value=1.1e-20  Score=195.09  Aligned_cols=356  Identities=11%  Similarity=0.022  Sum_probs=222.8

Q ss_pred             ccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc
Q 012238           70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE  149 (467)
Q Consensus        70 i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~  149 (467)
                      ..++.+.+...--+..++++.-.|++....++.++.+.+++.....+.....|....+..++.+.+.+++....|.+ ..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~  158 (497)
T 2qma_A           80 LKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLS-EK  158 (497)
T ss_dssp             HHHHHHHHHHHTTTTSCCTTSTTBCSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TT
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCC-CC
Confidence            33444444432234556666666666656666678887776554422223456555566677666555544433332 13


Q ss_pred             CceeeeecCCchhHHHHHHHHHH--Hh---------CC------CC-EEEEcCCCCcchHHHHhhCCC---CeEEeeeec
Q 012238          150 QRVATVQGLSGTGSLRLAAALIE--RY---------FP------GA-KVLISSPTWGNHKNIFNDARV---PWSEYRYYD  208 (467)
Q Consensus       150 ~~i~~~~t~ggt~al~l~~~~l~--~~---------~~------gd-~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~  208 (467)
                      +.+++  |+||++|+.++.....  .+         .+      |+ .|+++.++|..+...++..|.   +++.+|++ 
T Consensus       159 ~~~~~--t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~-  235 (497)
T 2qma_A          159 ADGIF--TSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDAN-  235 (497)
T ss_dssp             CEEEE--ESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC-
T ss_pred             CCeEE--cCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecC-
Confidence            67888  9999999998744321  11         12      46 899999999999998888876   78889883 


Q ss_pred             CCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhH
Q 012238          209 PKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS  285 (467)
Q Consensus       209 ~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~  285 (467)
                       +++.+|++.|++.+++.   ..++.+++++.++||||...+   +++|+++|++||+++++|++|.++....   + ..
T Consensus       236 -~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~---~-~~  307 (497)
T 2qma_A          236 -ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILS---S-HK  307 (497)
T ss_dssp             -TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGS---T-TG
T ss_pred             -CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhC---c-ch
Confidence             46789999999999742   112447888899999999766   5577778999999999999998776431   1 10


Q ss_pred             HHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCcc----------------
Q 012238          286 VRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMY----------------  349 (467)
Q Consensus       286 ~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------  349 (467)
                      . .+.......+++.|++|.++.| .++|+++  +.++..++.            +........                
T Consensus       308 ~-~~~gi~~~D~i~~s~hK~l~~p-~~~G~l~--~~~~~~~~~------------~~~~~~yl~~~~~~~~~~~~~~~~~  371 (497)
T 2qma_A          308 S-RLKGVERAHSISVDFHKLFYQT-ISCGALL--VNDKSNFKF------------LLHHADYLNREHDELPNLVDKSIAT  371 (497)
T ss_dssp             G-GGTTGGGCSEEEEETTTTTCCC-SSCEEEE--ESCGGGGGG------------GCC--------------------CC
T ss_pred             H-hhcCcccCCEEEEcchhccCCC-cceEEEE--EeCHHHHHH------------hcCCchhcCCccccCCCccccCCCC
Confidence            0 0101112236678999988866 6999996  466654443            110000000                


Q ss_pred             -CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc-cCCcceEEec--CC--C--
Q 012238          350 -SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI-LRQIGMFSFT--GL--N--  421 (467)
Q Consensus       350 -~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~-~~~~g~f~~~--~l--~--  421 (467)
                       .....+.+.++...+.        .+.++++.+++.++++++.+.|+ ++.   .+++. ++..+++.|.  +.  .  
T Consensus       372 ~r~~~al~~~~~l~~lg--------~~g~~~~~~~~~~~a~~l~~~L~-~~~---~~~~~~~~~~~~v~f~~~~~~~~~~  439 (497)
T 2qma_A          372 TKRFDALKVFMTMQNVG--------PKALGDMYDHLLAQTLEVADMIR-TND---QFELLAEPSLSTVLFRATHETADLD  439 (497)
T ss_dssp             SCCCTHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHHHHHH-TCT---TEEECSCCSSSEEEEEECCSSSCHH
T ss_pred             CCchhHHHHHHHHHHhC--------HHHHHHHHHHHHHHHHHHHHHHh-hCC---CeEEEcCCCceEEEEEEcCCccCHH
Confidence             0011223333333332        12356777888889999999998 652   15553 4566655443  11  1  


Q ss_pred             ---HHHHHHHHHcccEEEeCC----C----eEEec--cCChhhHHHHHHHHHHHHHhc
Q 012238          422 ---KAQSDNMTNKWHVYMTKD----G----RISLA--GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       422 ---~~~~~~ll~~~gI~v~~g----g----Ris~~--~~~~~~i~~~~~~l~~~l~~~  466 (467)
                         .++.+.+.+ .|+.+.++    |    ||+++  ..+++++++++++|+++++++
T Consensus       440 ~l~~~l~~~l~~-~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~  496 (497)
T 2qma_A          440 ELNKALRLEALT-RGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL  496 (497)
T ss_dssp             HHHHHHHHHHHH-HTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh-CCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence               123344554 48877542    3    99884  237899999999999998875

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.87  E-value=4.1e-20  Score=185.93  Aligned_cols=166  Identities=11%  Similarity=0.046  Sum_probs=127.9

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCC
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV  199 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~  199 (467)
                      +.....++++.+|+++..        +++++  +.||++|++++  +...+.+||+|+++.|.|......+    +..|+
T Consensus        80 ~~p~~~~le~~lA~l~g~--------~~~i~--~ssGt~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~  147 (415)
T 2fq6_A           80 GTLTHFSLQQAMCELEGG--------AGCVL--FPCGAAAVANS--ILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGV  147 (415)
T ss_dssp             CCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred             CCchHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence            455678899999999643        24555  68999999987  4445679999999999998776544    46788


Q ss_pred             CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCC
Q 012238          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASG  277 (467)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~--~~~~li~Deay~~~~~~  277 (467)
                      +++.++.       .|++.++++++   +++++|++++|+||||.+++.   ++|+++|++  +|+++|+|++|......
T Consensus       148 ~v~~v~~-------~d~~~le~ai~---~~tklV~~e~~~NptG~v~dl---~~I~~la~~~~~g~~livD~a~a~~~~~  214 (415)
T 2fq6_A          148 TTSWFDP-------LIGADIVKHLQ---PNTKIVFLESPGSITMEVHDV---PAIVAAVRSVVPDAIIMIDNTWAAGVLF  214 (415)
T ss_dssp             EEEEECT-------TCGGGGGGGCC---TTEEEEEEESSCTTTCCCCCH---HHHHHHHHHHCTTCEEEEECTTTTTTSS
T ss_pred             EEEEECC-------CCHHHHHHhhc---cCCcEEEEECCCCCCCEeecH---HHHHHHHHhhcCCCEEEEECCCcccccC
Confidence            8888765       28899988887   578999999999999999985   577777999  99999999998754322


Q ss_pred             CCCCChhHHHHHHhcCCeEEEEecCccCcccCCCcc-ceEEEecCCHHHHhh
Q 012238          278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAAR  328 (467)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~  328 (467)
                          .  ++    .. ..++++.|+||.++.+|.++ ||++   .++++++.
T Consensus       215 ----~--p~----~~-g~Div~~S~sK~lg~~g~~~~G~l~---~~~~~~~~  252 (415)
T 2fq6_A          215 ----K--AL----DF-GIDVSIQAATKYLVGHSDAMIGTAV---CNARCWEQ  252 (415)
T ss_dssp             ----C--GG----GG-TCSEEEEETTTTTTCSSSCCCEEEE---ECTTTHHH
T ss_pred             ----C--cc----cc-CCeEEEEeCccccCCCCCceEEEEE---eCHHHHHH
Confidence                1  11    11 24688999999999998765 7774   45556665

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.87  E-value=1.6e-20  Score=191.69  Aligned_cols=324  Identities=15%  Similarity=0.159  Sum_probs=190.9

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCC---cc---hHHHH----HHHHHHHhCCCCcccccCce-
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI---EG---LAAFN----KVTAELLFGADNSVLKEQRV-  152 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~---~G---~~~lr----~aia~~l~~~~~~~~~~~~i-  152 (467)
                      +.|+|..+..      + +++.|++++...+.+.+..+|+..   .|   ..+++    +.++++++..      .+++ 
T Consensus        55 ~~i~lias~n------~-~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~------~~~~~  121 (490)
T 2a7v_A           55 RGLELIASEN------F-CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLD------PAQWG  121 (490)
T ss_dssp             HSEECCTTCC------C-CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCC------TTTEE
T ss_pred             cCceEECCCC------C-CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCC------cccCc
Confidence            5688886543      2 489999999887754433344321   12   23555    6677775433      3222 


Q ss_pred             eeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH--------HHhhCCCCeE--EeeeecCCCCCCChhhHHHH
Q 012238          153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN--------IFNDARVPWS--EYRYYDPKTVGLDFEGMIAD  222 (467)
Q Consensus       153 ~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~--------~~~~~G~~~~--~v~~~~~~~~~~d~~~l~~~  222 (467)
                      +.+++.+|++|+.++  +.+.+.|||+|++++|.|..+..        .+...|..+.  .++++ ++++.+|++.+++.
T Consensus       122 ~~v~~~sGt~An~~a--l~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd-~~~~~iD~d~le~~  198 (490)
T 2a7v_A          122 VNVQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN-PKTGLIDYNQLALT  198 (490)
T ss_dssp             EECCCSSHHHHHHHH--HHHHCCSCEECCC-------------------------------CCBC-TTTCSBCHHHHHHH
T ss_pred             eEEeCCchHHHHHHH--HHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccc-cccCCcCHHHHHHH
Confidence            223367899999987  66678899999999998865421        2345565443  44443 34678999999999


Q ss_pred             HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEec
Q 012238          223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQS  301 (467)
Q Consensus       223 l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  301 (467)
                      ++.  .++++++++.++||+.  .+   +++|.++|++||+++++|+++. ++...+.  ...++    .  .-.+++.|
T Consensus       199 l~~--~~~klIi~~~s~~~~~--~d---l~~i~~ia~~~g~~livD~Ah~~glv~~g~--~~~~~----~--~aDiv~~S  263 (490)
T 2a7v_A          199 ARL--FRPRLIIAGTSAYARL--ID---YARMREVCDEVKAHLLADMAHISGLVAAKV--IPSPF----K--HADIVTTT  263 (490)
T ss_dssp             HHH--HCCSEEEECCSSCCSC--CC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTS--SCCGG----G--TCSEEEEE
T ss_pred             Hhh--cCCcEEEEcCCCCCCc--cc---HHHHHHHHHHcCCEEEEccccccccccCCc--CCCCC----C--CCCEEEEC
Confidence            874  2456788888999863  33   6788888999999999999943 3332211  11111    1  12478899


Q ss_pred             CccCcccCCCccceEEEecCCH--------------HHHhhhhhhhHHHHHHHHHhhccCcc-CCCchHHHHHHHHHhCC
Q 012238          302 YSKNLGLYAERIGAMNVVCSSS--------------DLAARCCEVAVIQVKSQLKRLARPMY-SNPPVHGARIVANVVGN  366 (467)
Q Consensus       302 ~SK~~~~~G~RiG~~~~v~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~L~~  366 (467)
                      +||++  .|.|.|+++  +.+.              ++.+.            ++....+.. .+++.....+...++. 
T Consensus       264 ~hK~l--~Gp~GG~i~--~~~~~~~~~~~~~~~~~~~l~~~------------i~~~~~~g~qggp~~~~iaAla~Al~-  326 (490)
T 2a7v_A          264 THKTL--RGARSGLIF--YRKGVKAVDPKTGREIPYTFEDR------------INFAVFPSLQGGPHNHAIAAVAVALK-  326 (490)
T ss_dssp             SSGGG--CSCSCEEEE--EECSEEEEETTTEEEEECCCHHH------------HHHHHTTTTCCSCCHHHHHHHHHHHH-
T ss_pred             CcccC--ccccchhee--eccchhcccccccchhhHHHHHH------------HHHHhcccCCCCchHHHHHHHHHHHH-
Confidence            99987  467789885  3332              23333            444333322 2333333223222322 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccC-CcceEEecC-----CCHHHHHHHHHcccEEEeC--
Q 012238          367 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-QIGMFSFTG-----LNKAQSDNMTNKWHVYMTK--  438 (467)
Q Consensus       367 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~-~~g~f~~~~-----l~~~~~~~ll~~~gI~v~~--  438 (467)
                          +...++.++..+++.++++++.+.|. +.|    +++..+ ....++|++     ++.+.+.+.|++.||.+..  
T Consensus       327 ----~~~~~~~~~~~~~~~~na~~L~~~L~-~~G----~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~  397 (490)
T 2a7v_A          327 ----QACTPMFREYSLQVLKNARAMADALL-ERG----YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNT  397 (490)
T ss_dssp             ----HHHSHHHHHHHHHHHHHHHHHHHHHH-HTT----CEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEEC
T ss_pred             ----HHhhhhHHHHHHHHHHHHHHHHHHHH-HcC----cEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCc
Confidence                11112345677888899999999999 877    455442 234456653     3567777788888999873  


Q ss_pred             --C--------C-eEEec-----cCChhhHHHHHHHHHHHHH
Q 012238          439 --D--------G-RISLA-----GLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       439 --g--------g-Ris~~-----~~~~~~i~~~~~~l~~~l~  464 (467)
                        +        | ||+..     ++++++++++++.|.++++
T Consensus       398 ~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~  439 (490)
T 2a7v_A          398 CPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             CTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHH
Confidence              2        1 77542     2478999999999998875

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.79  E-value=6.5e-24  Score=215.61  Aligned_cols=330  Identities=15%  Similarity=0.060  Sum_probs=206.6

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.|||..|.....-|.  -+|.|.+++.+.+.......| +.....+|.+.+++++.+       .+.+++  +++|+
T Consensus        99 G~~yiD~~~~~~~~~lGh--~~p~V~~Av~~q~~~~~~~~~-~~~~~~~Lae~L~~~~p~-------~~~v~~--~nSGs  166 (465)
T 2yky_A           99 GHAYVNFLGEYTAGLFGH--SHPVIRAAVERALAVGLNLST-QTENEALFAEAVCDRFPS-------IDLVRF--TNSGT  166 (465)
Confidence            347899988875222222  267788888887755433444 555566788888877521       457888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCC--CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARV--PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~--~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i  235 (467)
                      +|+..+.++...+..+++|++.+++|..+.....    ..|+  .++.+|.       .|++.+++.+++.++++++|++
T Consensus       167 eA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~~~~~aavi~  239 (465)
T 2yky_A          167 EANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRHGHDCAAILV  239 (465)
Confidence            9999984433223456899999999977654332    1233  2223332       4788898888753345667666


Q ss_pred             CCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccc
Q 012238          236 GCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (467)
Q Consensus       236 ~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG  314 (467)
                      ...+|+||.+. +.+.+++|.++|++||+++|+||+|. +..+.    ...... ...   ..-+.+|||.+|. |+|+|
T Consensus       240 epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~----~~a~~~-~gv---~pDi~t~sK~lg~-G~piG  309 (465)
T 2yky_A          240 EPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSG----GGAQEM-LGI---SADLTTLGKYIGG-GMSFG  309 (465)
Confidence            65566799654 68889999999999999999999999 64331    111111 111   1224489999995 99999


Q ss_pred             eEEEecCCHHHHhhhhhhhHHHHHHHHHh-----hccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012238          315 AMNVVCSSSDLAARCCEVAVIQVKSQLKR-----LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ  389 (467)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~  389 (467)
                      |++   +++++++.            +..     .....+.+.+.+++.++...|+.-      ++  +...++++++.+
T Consensus       310 ~v~---~~~~i~~~------------l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l------~~--~~~~~~~~~~~~  366 (465)
T 2yky_A          310 AFG---GRRDLMER------------FDPARDGAFAHAGTFNNNILTMSAGHAALTQI------YT--RQAASDLSASGD  366 (465)
Confidence            985   77888776            433     112223355666666666555421      01  134455555566


Q ss_pred             HHHHHhhhccCCCCCcccccCCcceEEecCCC------------------HHHHHHHHHcccEEEeCCC--eEEeccCCh
Q 012238          390 KLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN------------------KAQSDNMTNKWHVYMTKDG--RISLAGLSL  449 (467)
Q Consensus       390 ~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~------------------~~~~~~ll~~~gI~v~~gg--Ris~~~~~~  449 (467)
                      ++.+.|+ ++.-...+....+..|.++|+.+.                  ..+++.+++ +||++.|++  .+++.. ++
T Consensus       367 ~l~~~L~-~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~GV~v~p~~~~~~s~~~-t~  443 (465)
T 2yky_A          367 RFRANLN-RIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLR-KGIYLAPRGMYALSLEI-AD  443 (465)
Confidence            6666655 431000011112334545554321                  134556665 699999876  366654 88


Q ss_pred             hhHHHHHHHHHHHHHhc
Q 012238          450 AKCEYLADAIIDSYHNV  466 (467)
Q Consensus       450 ~~i~~~~~~l~~~l~~~  466 (467)
                      +++++++++|.++++++
T Consensus       444 edid~~l~~l~~~l~~~  460 (465)
T 2yky_A          444 AGRDAFAEALADFIGEQ  460 (465)
Confidence            99999999999998764

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.87  E-value=4.7e-20  Score=184.71  Aligned_cols=244  Identities=14%  Similarity=0.082  Sum_probs=169.0

Q ss_pred             HHHHHHHHHHHh------cCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCC
Q 012238          104 DVVKKAENLMLE------RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (467)
Q Consensus       104 ~~v~~a~~~~~~------~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~g  177 (467)
                      ..|++++.+...      ....+.| +..|..+|++.+|+++...       ..+++.++.+|++|+.++  +...+.||
T Consensus        32 ~~vl~a~~~~~~~~~~~~~~~~~~y-~~~~~~~Le~~lA~l~g~e-------~alv~p~~~sGt~Ai~~a--l~all~~G  101 (409)
T 3jzl_A           32 AKVLDAFQENKVSDFHFHPSTGYGY-DDEGRDTLERVYATVFKTE-------AALVRPQIISGTHAISTV--LFGILRPD  101 (409)
T ss_dssp             HHHHHHHHHTTCCGGGGCCCCTTCT-TCHHHHHHHHHHHHHHTCS-------EEEEETTSCSHHHHHHHH--HHHHCCTT
T ss_pred             HHHHHHHHHhhhhhhccCCCcCCCC-ChhHHHHHHHHHHHHhCCC-------cEEEECCCccHHHHHHHH--HHHhcCCC
Confidence            456666666431      1112345 4557899999999996532       233321268899999887  55667899


Q ss_pred             CEEEEcC-CCCcchHH----------HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC----CCCCC
Q 012238          178 AKVLISS-PTWGNHKN----------IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC----AHNPT  242 (467)
Q Consensus       178 d~Vlv~~-P~y~~~~~----------~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~----p~NPT  242 (467)
                      |+|+++. |.|..+..          .++..|++++.++.+  .++.+|++.++++++   ++++++++++    |+|||
T Consensus       102 D~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~--~~g~~d~e~l~~ai~---~~tklV~i~~s~g~p~npt  176 (409)
T 3jzl_A          102 DELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLL--ENGDVDFPRIAKKMT---PKTKMIGIQRSRGYADRPS  176 (409)
T ss_dssp             CEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCC--TTSCCCHHHHHHHCC---TTEEEEEEECSCTTSSSCC
T ss_pred             CEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCC--CCCCcCHHHHHHhcc---CCCeEEEEECCCCCCCCCc
Confidence            9999998 99998875          346779999999884  357899999999987   5788999999    99999


Q ss_pred             CCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCC-ccceEEEe
Q 012238          243 GIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVV  319 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~--~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v  319 (467)
                      |.   ..++++|+++|++  +|+++++|++|..+.+..   ...      .. ...++++|+||.++.+|. +.||++  
T Consensus       177 g~---v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~---~p~------~~-g~Div~~S~sK~lgg~~~~~GG~v~--  241 (409)
T 3jzl_A          177 FT---IEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQ---EPP------EV-GADIIAGSLIKNPGGGLAKTGGYIA--  241 (409)
T ss_dssp             CC---HHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSC---CSG------GG-TCSEEEEETTSGGGTTTCSSCEEEE--
T ss_pred             Cc---cccHHHHHHHHHhhCCCCEEEEeCCcccccccC---Ccc------cc-CCeEEEECccccCCccCCceEEEEE--
Confidence            87   4678899999999  999999999998776431   111      11 235889999999997663 357774  


Q ss_pred             cCCHHHHhhhhhhhHHHHHHHHHhhccC--c--cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012238          320 CSSSDLAARCCEVAVIQVKSQLKRLARP--M--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL  395 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l  395 (467)
                       +++++++.            ++.....  .  ..++....+.++...          .+.+..+.++..+++.++.+.|
T Consensus       242 -~~~~li~~------------l~~~~~~~~~g~~~g~~~~~~~~~l~g----------l~~~~~r~~~~~~~a~~la~~L  298 (409)
T 3jzl_A          242 -GKEALVDL------------CGYRLTTPGIGREAGASLYSLLEMYQG----------FFLAPHVTAQAIKGARFTAAML  298 (409)
T ss_dssp             -ECHHHHHH------------HHHHHSCTTTGGGCCCCTTCHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -eCHHHHHH------------HHHHhccccccccccccHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHH
Confidence             78888887            4432211  1  111211111222111          1224566777888899999999


Q ss_pred             hhccCC
Q 012238          396 SAKDKS  401 (467)
Q Consensus       396 ~~~~g~  401 (467)
                      + ++|.
T Consensus       299 ~-~~g~  303 (409)
T 3jzl_A          299 A-EFGV  303 (409)
T ss_dssp             H-HTTC
T ss_pred             H-hCCC
Confidence            9 8874

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.86  E-value=6.6e-20  Score=189.58  Aligned_cols=321  Identities=11%  Similarity=0.033  Sum_probs=206.5

Q ss_pred             HHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh------CCC---
Q 012238          107 KKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY------FPG---  177 (467)
Q Consensus       107 ~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~------~~g---  177 (467)
                      .+.+....+.+. ..|....+..++++.+.+++....|.+.+++++++  |.|||+|+.++.......      .+|   
T Consensus       110 ~~~l~~~~n~~~-~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~--t~ggtea~~~al~~~~~~~~~~~~~~G~~~  186 (504)
T 2okj_A          110 GEWLTSTANTNM-FTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIF--SPGGAISNMYSIMAARYKYFPEVKTKGMAA  186 (504)
T ss_dssp             HHHHHHHHCCBS-SCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEE--ESSHHHHHHHHHHHHHHHHCTTHHHHCGGG
T ss_pred             HHHHHHhhccCC-CchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEE--eCCcHHHHHHHHHHHHHHHhhHHhhcCccc
Confidence            345555544432 45665666666776665555443343323567888  999999999874333210      146   


Q ss_pred             --C-EEEEcCCCCcchHHHHhhCCC---CeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCH
Q 012238          178 --A-KVLISSPTWGNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTP  248 (467)
Q Consensus       178 --d-~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~~~  248 (467)
                        + +|+++.++|..+...++..|.   +++.+|++  +++.+|++.|++.+++.   ..++++|++++|+||||.+.+ 
T Consensus       187 ~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~-  263 (504)
T 2okj_A          187 VPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP-  263 (504)
T ss_dssp             SCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC-
T ss_pred             cCCeEEEECCcchHHHHHHHHHcCCCcccEEEEecC--CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC-
Confidence              6 799999999999999998877   88889883  46889999999999741   125789999999999999876 


Q ss_pred             HHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhh
Q 012238          249 EQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       249 ~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                        +++|+++|++||+++++|++|.++.....+.. ..+   .....-.+++.|++|.++.| .++|+++  +.++++++.
T Consensus       264 --l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~-~~~---~g~~~~D~i~~~~hK~~~~p-~~~g~l~--~~~~~~~~~  334 (504)
T 2okj_A          264 --IQEIADICEKYNLWLHVDAAWGGGLLMSRKHR-HKL---NGIERANSVTWNPHKMMGVL-LQCSAIL--VKEKGILQG  334 (504)
T ss_dssp             --HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG-GGG---TTGGGCSEEEECTTSTTCCC-SCCEEEE--ESSTTHHHH
T ss_pred             --HHHHHHHHHHcCCEEEEehhhhhHHHhCHhhH-hhc---CCcccCCEEEECchhhcCCC-cceEEEE--EECHHHHHH
Confidence              45777789999999999999988765321110 111   10111236678899999865 6899996  455544432


Q ss_pred             hhhhhHHHHHHHHHhhccCccC--------------------CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238          329 CCEVAVIQVKSQLKRLARPMYS--------------------NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  388 (467)
Q Consensus       329 ~~~~~~~~~~~~l~~~~~~~~~--------------------~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r  388 (467)
                              .   +.........                    ....+.+.++..++.        .+.++++.++..+++
T Consensus       335 --------~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg--------~~g~~~~~~~~~~~a  395 (504)
T 2okj_A          335 --------C---NQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG--------TVGFENQINKCLELA  395 (504)
T ss_dssp             --------H---HCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred             --------H---hcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh--------HHHHHHHHHHHHHHH
Confidence                    0   1111111100                    012344444433332        233667788888999


Q ss_pred             HHHHHHhhhccCCCCCccccc---CCcceEEecCC--------------------CHHHHHHHHHcccE-EEeC----C-
Q 012238          389 QKLFDSLSAKDKSGKDWSFIL---RQIGMFSFTGL--------------------NKAQSDNMTNKWHV-YMTK----D-  439 (467)
Q Consensus       389 ~~l~~~l~~~~g~~~~~~~~~---~~~g~f~~~~l--------------------~~~~~~~ll~~~gI-~v~~----g-  439 (467)
                      +++.+.|+ +..   ++++..   |..++++|...                    +.++.+.++++ |+ .+.+    + 
T Consensus       396 ~~l~~~L~-~~~---~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~~~  470 (504)
T 2okj_A          396 EYLYAKIK-NRE---EFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQGDK  470 (504)
T ss_dssp             HHHHHHHT-TCT---TEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEEEETTE
T ss_pred             HHHHHHHh-cCC---CEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhC-CcEEEEeeEECCc
Confidence            99999998 652   156553   66677766321                    12344566655 64 4431    2 


Q ss_pred             -C--eEEecc--CChhhHHHHHHHHHHHHHhc
Q 012238          440 -G--RISLAG--LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 -g--Ris~~~--~~~~~i~~~~~~l~~~l~~~  466 (467)
                       +  ||++++  .+++++++++++|+++++++
T Consensus       471 ~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~  502 (504)
T 2okj_A          471 ANFFRMVISNPAATQSDIDFLIEEIERLGQDL  502 (504)
T ss_dssp             EEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             eEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence             2  898862  27799999999999988764

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.86  E-value=5.2e-20  Score=190.37  Aligned_cols=324  Identities=11%  Similarity=0.047  Sum_probs=213.5

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh--------
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--------  174 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~--------  174 (467)
                      +..+.+++...++.+. ..|....+..++++.+++|+....|...+++.+++  |.|||+|+..+.......        
T Consensus       109 ~~~~~e~l~~~~~~~~-~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~--t~ggt~a~~~al~~a~~~~~~~~~~~  185 (511)
T 3vp6_A          109 IGLAGEWLTSTANTNM-FTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIF--SPGGAISNMYSIMAARYKYFPEVKTK  185 (511)
T ss_dssp             HHHHHHHHHHHHCCCS-SCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEE--ESSHHHHHHHHHHHHHHHHCTHHHHH
T ss_pred             HHHHHHHHHHHhccCC-CCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEE--CCchHHHHHHHHHHHHHHhhhhhhhc
Confidence            4455667777766543 77888889999999999988766666544567888  999999998873322111        


Q ss_pred             ----CCCCEEEEcCCCCcchHHHHhhCCC---CeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCC
Q 012238          175 ----FPGAKVLISSPTWGNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGI  244 (467)
Q Consensus       175 ----~~gd~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~  244 (467)
                          .+++.|+++.++|..+...++..|+   +++.++.+  .++.+|++.|++.+++.   ..+++++++++++||||.
T Consensus       186 G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~  263 (511)
T 3vp6_A          186 GMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGA  263 (511)
T ss_dssp             CGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCC
T ss_pred             CcccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecC--CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcc
Confidence                1567999999999999999999998   88888883  46889999999999742   122788999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHH
Q 012238          245 DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (467)
Q Consensus       245 ~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~  324 (467)
                      +-+   +++|+++|++||+++++|++|........+.. ..   +.....-.+++.+++|.++.| ...|+++  +.+++
T Consensus       264 vd~---l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~-~~---~~g~~~aDsv~~~~hK~l~~p-~g~g~l~--~~~~~  333 (511)
T 3vp6_A          264 FDP---IQEIADICEKYNLWLHVDAAWGGGLLMSRKHR-HK---LNGIERANSVTWNPHKMMGVL-LQCSAIL--VKEKG  333 (511)
T ss_dssp             BCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG-GG---GTTGGGCSEEEECTTSTTCCC-SCCEEEE--ESSTT
T ss_pred             ccc---HHHHHHHHHHcCCEEEEEccchhhHhhChhhh-hh---ccCCccCCEEEECcccccCCC-cCeEEEE--EeCHH
Confidence            854   66888889999999999999987654211111 00   000111245667999998865 5678875  46665


Q ss_pred             HHhhhhhhhHHHHHHHHHhhccCcc--------------------C-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012238          325 LAARCCEVAVIQVKSQLKRLARPMY--------------------S-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGR  383 (467)
Q Consensus       325 ~~~~~~~~~~~~~~~~l~~~~~~~~--------------------~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~  383 (467)
                      ....            .........                    + ....+...++...+.        .+.++++.++
T Consensus       334 ~~~~------------~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g--------~~gl~~~~~~  393 (511)
T 3vp6_A          334 ILQG------------CNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG--------TVGFENQINK  393 (511)
T ss_dssp             HHHH------------HHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred             HHHH------------HhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHh--------HHHHHHHHHH
Confidence            5443            211100000                    0 112333333332221        2346788888


Q ss_pred             HHHHHHHHHHHhhhccCCCCCccccc---CCcceEEec----CC----------------CHHHHHHHHHcccEEEeC--
Q 012238          384 IKNVRQKLFDSLSAKDKSGKDWSFIL---RQIGMFSFT----GL----------------NKAQSDNMTNKWHVYMTK--  438 (467)
Q Consensus       384 ~~~~r~~l~~~l~~~~g~~~~~~~~~---~~~g~f~~~----~l----------------~~~~~~~ll~~~gI~v~~--  438 (467)
                      ..++.+++.+.|+ +..  + +++..   +..+.++|.    ++                +.++.++|+++ |+.+..  
T Consensus       394 ~~~~a~~l~~~L~-~~p--g-~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~~~  468 (511)
T 3vp6_A          394 CLELAEYLYAKIK-NRE--E-FEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQ  468 (511)
T ss_dssp             HHHHHHHHHHHHH-SCT--T-EEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEEEE
T ss_pred             HHHHHHHHHHHHh-cCC--C-EEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEE
Confidence            8899999999998 652  1 56554   555555542    11                11345566665 643322  


Q ss_pred             ---CC----eEEecc--CChhhHHHHHHHHHHHHHhc
Q 012238          439 ---DG----RISLAG--LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       439 ---gg----Ris~~~--~~~~~i~~~~~~l~~~l~~~  466 (467)
                         ++    ||++++  .+.+++++++++|+++-+++
T Consensus       469 ~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~  505 (511)
T 3vp6_A          469 PQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL  505 (511)
T ss_dssp             EETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred             EeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence               22    888743  36789999999999886653

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.86  E-value=9.2e-20  Score=184.12  Aligned_cols=163  Identities=20%  Similarity=0.092  Sum_probs=125.9

Q ss_pred             CcCCC--CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH---
Q 012238          120 KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF---  194 (467)
Q Consensus       120 ~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~---  194 (467)
                      +.|..  .....++++++++++...       +.++   +.+|++|+.++  +...+.+||+|+++.|+|..+...+   
T Consensus        50 ~~y~~~~~~~~~~l~~~la~~~g~~-------~~v~---~~sGt~A~~~~--l~~~~~~gd~vi~~~~~~~~~~~~~~~~  117 (421)
T 2ctz_A           50 NIYSRIMNPTVDVLEKRLAALEGGK-------AALA---TASGHAAQFLA--LTTLAQAGDNIVSTPNLYGGTFNQFKVT  117 (421)
T ss_dssp             GSCBTTBCHHHHHHHHHHHHHHTCS-------EEEE---ESSHHHHHHHH--HHHHCCTTCEEEECSCCCHHHHHHHHTH
T ss_pred             CcccCCCChHHHHHHHHHHHHhCCC-------ceEE---ecCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHH
Confidence            44543  334689999999997542       2344   45669999997  3444679999999999998876655   


Q ss_pred             -hhCCCCeEEe-eeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC
Q 012238          195 -NDARVPWSEY-RYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ  272 (467)
Q Consensus       195 -~~~G~~~~~v-~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~  272 (467)
                       +..|++++.+ +.       .|++.+++.++   ++++++++++|+||||.+++   +++|+++|+++|+++|+|++|.
T Consensus       118 ~~~~g~~~~~~~~~-------~d~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~  184 (421)
T 2ctz_A          118 LKRLGIEVRFTSRE-------ERPEEFLALTD---EKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFG  184 (421)
T ss_dssp             HHHTTCEEEECCTT-------CCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGG
T ss_pred             HHHcCCEEEEECCC-------CCHHHHHHhhc---cCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcc
Confidence             7789998888 65       28899999887   57889999999999999999   5678888999999999999983


Q ss_pred             CCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          273 GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                      .+.+..   ...      .. ...+++.|++|.++.+|.|+|+++
T Consensus       185 ~~g~~~---~~~------~~-~~Di~~~s~~K~l~~~g~~~G~~~  219 (421)
T 2ctz_A          185 MGGYLL---RPL------AW-GAALVTHSLTKWVGGHGAVIAGAI  219 (421)
T ss_dssp             GGGTSC---CGG------GG-TCSEEEEETTTTTTCSSCCCCEEE
T ss_pred             cccccC---Ccc------cc-CCeEEEECCcccccCCCCcEEEEE
Confidence            333321   111      11 245889999999999999999997

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.86  E-value=1.5e-19  Score=181.77  Aligned_cols=246  Identities=14%  Similarity=0.083  Sum_probs=170.2

Q ss_pred             HHHHHHHHHHH------hcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCC
Q 012238          104 DVVKKAENLML------ERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (467)
Q Consensus       104 ~~v~~a~~~~~------~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~g  177 (467)
                      +.|++++.+..      .....+.| +..|..+|++.+|+++...       ..++..|+.+|++|+.++  +...+.||
T Consensus        46 ~~Vl~A~~~~~~~~~~~~~~~gy~y-~~~~~~~Le~~lA~l~g~e-------~alv~p~~~sGt~Ai~~a--l~all~pG  115 (427)
T 3i16_A           46 LKVLNAFQEERISEAHFTNSSGYGY-GDIGRDSLDAVYARVFNTE-------SALVRPHFVNGTHALGAA--LFGNLRPG  115 (427)
T ss_dssp             HHHHHHHHHTTCCGGGSCCCCTTCT-TCHHHHHHHHHHHHHHTCS-------EEEEETTCCSHHHHHHHH--HHHHCCTT
T ss_pred             HHHHHHHHHhchhHHhcCCCCCCCC-CHHHHHHHHHHHHHHhCCc-------ceEEeCCCccHHHHHHHH--HHHHhCCC
Confidence            55777776542      11111334 4567899999999997543       224421258889999887  55668899


Q ss_pred             CEEEEcC-CCCcchHH-----------HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC----CCCC
Q 012238          178 AKVLISS-PTWGNHKN-----------IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC----AHNP  241 (467)
Q Consensus       178 d~Vlv~~-P~y~~~~~-----------~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~----p~NP  241 (467)
                      |+|++++ |.|..+..           .++..|++++.++.+  +++.+|++.+++.+++. ++++++++++    |+||
T Consensus       116 D~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~--~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~np  192 (427)
T 3i16_A          116 NTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLK--EDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRR  192 (427)
T ss_dssp             CEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCC--TTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSC
T ss_pred             CEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCc--cCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCC
Confidence            9999999 99998874           345679999998874  34679999999999742 3678888888    8999


Q ss_pred             CCCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCC-CccceEEE
Q 012238          242 TGIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNV  318 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~--~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~  318 (467)
                      ||.   ..++++|+++|++  +|+++++|++|..+.+..   ...      .. ...++++|+||++|.+| .+.||++ 
T Consensus       193 tg~---i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~---~p~------~~-gaDiv~~S~sK~lgg~g~~~gG~i~-  258 (427)
T 3i16_A          193 ALL---IEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTK---EPT------DV-GADLIAGSLIKNIGGGIAPTGGYLA-  258 (427)
T ss_dssp             CCC---HHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSS---CGG------GG-TCSEEEEETTSGGGTTTCCSCEEEE-
T ss_pred             ccc---HHHHHHHHHHHHHhCCCCEEEEECCCccccccC---Ccc------cc-CCeEEEecCcccCCCCCCceEEEEE-
Confidence            986   5788899999999  999999999998776431   111      11 23588999999998766 5668884 


Q ss_pred             ecCCHHHHhhhhhhhHHHHHHHHHhhc--cCccC-CCchHH-HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          319 VCSSSDLAARCCEVAVIQVKSQLKRLA--RPMYS-NPPVHG-ARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS  394 (467)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~-~~~~~~-~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~  394 (467)
                        +++++++.            ++...  ..... ..+.+. ...+...          .+.+..+.++..+++.++.+.
T Consensus       259 --~~~~li~~------------l~~~~~~~~~g~~~~~~~~~a~~~l~g----------l~~~~~r~~~~~~~a~~la~~  314 (427)
T 3i16_A          259 --GTKDCIEK------------TSYRLTVPGIGGECGSTFGVVRSMYQG----------LFLAPHISMEALKGAILCSRI  314 (427)
T ss_dssp             --ECHHHHHH------------HHHHHSCTTTGGGCCCCTTCHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             --ECHHHHHH------------HHHhcccCccCccCCccHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence              78888887            44321  11111 111111 1222111          122456778888889999999


Q ss_pred             hhhccCC
Q 012238          395 LSAKDKS  401 (467)
Q Consensus       395 l~~~~g~  401 (467)
                      |+ ++|.
T Consensus       315 L~-~~g~  320 (427)
T 3i16_A          315 ME-LAGF  320 (427)
T ss_dssp             HH-HTTC
T ss_pred             HH-hCCC
Confidence            99 8873

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.86  E-value=5.8e-21  Score=194.26  Aligned_cols=285  Identities=11%  Similarity=0.040  Sum_probs=172.3

Q ss_pred             cCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCC
Q 012238          121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP  200 (467)
Q Consensus       121 ~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~  200 (467)
                      -|.+.....++++.+++ +..       .+++++  |+|+++++.++  +...+.+||+|+++.|+|..+...+...|++
T Consensus        52 ~~~~~~~~~~~~~~la~-~g~-------~~~v~~--~~G~t~a~~~~--~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~  119 (446)
T 2x3l_A           52 LHHPEEVILKSMKQVEK-HSD-------YDGYFL--VNGTTSGILSV--IQSFSQKKGDILMARNVHKSVLHALDISQQE  119 (446)
T ss_dssp             TTSCSSHHHHHHHHHCS-CTT-------EEEEEE--SSHHHHHHHHH--HHTTTTSSSCEEECTTCCHHHHHHHHHHTCC
T ss_pred             ccCcchHHHHHHHHHHh-cCC-------CceEEE--eCCHHHHHHHH--HHHhcCCCCEEEEecCccHHHHHHHHHcCCe
Confidence            34566677888888888 532       257878  99999999998  4445679999999999999999999999999


Q ss_pred             eEEeeeecCCC----CCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC-CC
Q 012238          201 WSEYRYYDPKT----VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG-FA  275 (467)
Q Consensus       201 ~~~v~~~~~~~----~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~-~~  275 (467)
                      ++.++...+++    +.+|++.+   +.   ++++++++++ +|+||.+++.   ++|+++|++||+++|+||+|.. +.
T Consensus       120 ~~~v~~~~~~~~~~~~~~d~~~l---~~---~~~~~v~~~~-~n~~G~~~~l---~~I~~l~~~~~~~livDea~~~~~~  189 (446)
T 2x3l_A          120 GHFIETHQSPLTNHYNKVNLSRL---NN---DGHKLVVLTY-PNYYGETFNV---EEVIKSLHQLNIPVLIDEAHGAHFG  189 (446)
T ss_dssp             EEECEEEECTTTSSEEEEEC-------------CCEEEEES-SCTTSCCCCH---HHHHHHHHHTTCCEEEECTTCTTTT
T ss_pred             EEEEeCeeccccCcCCCCCHHHH---cC---CCceEEEEEC-CCCCeEecCH---HHHHHHHHhcCCeEEEcchhhhhhc
Confidence            99998732222    45788877   22   4567777777 5669999985   5778889999999999999886 33


Q ss_pred             CCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHh--hhhhhhHHHHHHHHHhhccCccCCCc
Q 012238          276 SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAA--RCCEVAVIQVKSQLKRLARPMYSNPP  353 (467)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~  353 (467)
                      +++.   ...   ....+ ..+++.|+||.++ .+.++||++   .+++.++  .        +.......   ....++
T Consensus       190 f~~~---~~~---~~~~g-~Di~~~S~~K~l~-~~~g~g~l~---~~~~~i~~~~--------~~~~~~~~---~~~s~~  247 (446)
T 2x3l_A          190 LQGF---PDS---TLNYQ-ADYVVQSFHKTLP-ALTMGSVLY---IHKNAPYREN--------IIEYLSYF---QTSSPS  247 (446)
T ss_dssp             STTS---CCC---GGGGT-CSEEEECHHHHSS-SCTTCEEEE---EETTCTTHHH--------HHHHHHHH---SCSSCC
T ss_pred             cCCC---CCC---hHHcC-CCEEEECCccccc-cccccEEEE---EcCCcCCHHH--------HHHHHHHH---cCCCch
Confidence            3321   111   11122 2388999999543 234479986   3333332  2        22211111   112233


Q ss_pred             hHHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecC---CCHHH-HHHH
Q 012238          354 VHGARIVANVVGNPALFDEWKAE-MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTG---LNKAQ-SDNM  428 (467)
Q Consensus       354 ~~~~~~~~~~L~~~~~~~~~~~~-l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~---l~~~~-~~~l  428 (467)
                      .....++..++   .+.   ... .++..++.    ..+.+.++ +.+    +++..+..+.++|+.   .+... .+.|
T Consensus       248 ~~~~aal~~a~---~~l---~~~g~~~~~~~~----~~l~~~l~-~~g----~~~~~~~~~~~l~i~~~~~~~~~l~~~L  312 (446)
T 2x3l_A          248 YLIMASLESAA---QFY---KTYDSTLFFAKR----AQLIECLE-NKG----FEMLQVDDPLKLLIKYEGFTGHDIQNWF  312 (446)
T ss_dssp             HHHHHHHHHHH---HHH---HHCCCHHHHHHH----HHHHHHHH-HHT----CEEEECSSTTEEEEECTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHH---HHH---HHhCHHHHHHHH----HHHHHHHH-HcC----CEECcCCCCeEEEEEeCCcCHHHHHHHH
Confidence            22222221111   110   000 01123333    33334444 323    345544444456653   45544 4455


Q ss_pred             HHcccEEEe-CCC---eEEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238          429 TNKWHVYMT-KDG---RISLAGL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       429 l~~~gI~v~-~gg---Ris~~~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                      .+ +||.+. +|.   |++++.. +++++ +++++|+++++.+
T Consensus       313 ~~-~GI~v~~~g~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~  353 (446)
T 2x3l_A          313 MN-AHIYLELADDYQALAILPLWHHDDTY-LFDSLLRKIEDMI  353 (446)
T ss_dssp             HH-TTEEESEECSSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred             HH-CCCEEEecCCCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence            55 599998 553   9998742 67889 9999999987653

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.85  E-value=8.5e-20  Score=184.30  Aligned_cols=228  Identities=17%  Similarity=0.116  Sum_probs=159.4

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcC-CCCcchHHHH--------
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISS-PTWGNHKNIF--------  194 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~-P~y~~~~~~~--------  194 (467)
                      +..+..++++.+++++...    ....++++   .+|++|+.++  +...+.|||+|+++. |.|..+...+        
T Consensus        63 ~~~~~~~l~~~la~~~g~~----~~~~~i~~---~sGt~Ai~~a--l~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~  133 (431)
T 3ht4_A           63 DDIGRDTLEKVYADVFGAE----AGLVRPQI---ISGTHAISTA--LFGILRPGDELLYITGKPYDTLEEIVGVRGKGVG  133 (431)
T ss_dssp             SCHHHHHHHHHHHHHTTCS----EECCBTTS---CSHHHHHHHH--HHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSS
T ss_pred             ChhhHHHHHHHHHHHhCCC----ccccccee---eCHHHHHHHH--HHHhCCCCCEEEEeCCCCchhHHHHHhhcccccc
Confidence            3445677888888885432    11223334   4779999987  444577999999998 9999988655        


Q ss_pred             --hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeC-CCCCCCCCCCCHHHHHHHHHHHHh--cCCeeEEec
Q 012238          195 --NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG-CAHNPTGIDPTPEQWEKIADVIQE--KNHIPFFDV  269 (467)
Q Consensus       195 --~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~-~p~NPTG~~~~~~~l~~l~~~~~~--~~~~li~De  269 (467)
                        +..|++++.++.+  .++.+|++.+++.++   +++++|+++ +||||||...+.+++++|+++|++  +|+++|+|+
T Consensus       134 ~~~~~G~~~~~v~~~--~~~~~d~e~l~~~l~---~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDe  208 (431)
T 3ht4_A          134 SFKEYNIGYNAVPLT--EGGLVDFEAVAAAIH---SNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDN  208 (431)
T ss_dssp             CSGGGTCEEEECCBC--TTSSBCHHHHHHHCC---TTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEEC
T ss_pred             hHHHcCCEEEEeCCC--CCCCcCHHHHHhhcC---CCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence              4479999999884  357899999999997   577788888 599999999999999999999999  999999999


Q ss_pred             cCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc-CCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc
Q 012238          270 AYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM  348 (467)
Q Consensus       270 ay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  348 (467)
                      +|..+.++.   ...      .. ...++++|+||++|. .+...||++   +++++++.            ++......
T Consensus       209 a~~~~~~~~---~~~------~~-g~Di~~~S~sK~lgg~~~~~GG~v~---~~~~li~~------------l~~~~~~~  263 (431)
T 3ht4_A          209 CYGEFIEEQ---EPC------HV-GADLMAGSLIKNPGGGIVKTGGYIV---GKEQYVEA------------CAYRLTSP  263 (431)
T ss_dssp             TTCTTSSSC---CGG------GT-TCSEEEEETTSGGGTTTCSSCEEEE---ECHHHHHH------------HHHHHSCT
T ss_pred             CChhhccCC---Ccc------cc-CCeEEEcCccccCCCCCCCceEEEE---ecHHHHHH------------HHHHhccC
Confidence            999887542   111      11 235889999999653 123338885   77888887            43322211


Q ss_pred             ----cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          349 ----YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       349 ----~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                          ..+++...+.++...+          +.+..+.++..++..++.+.|+ ++|.
T Consensus       264 ~~g~~~~~~~~~~~~~~~~l----------~~~~~~~~~~~~~a~~l~~~L~-~~g~  309 (431)
T 3ht4_A          264 GIGAEAGASLYSLQEMYQGF----------FLAPHVAGQALKGAIFTAAFLE-KLGM  309 (431)
T ss_dssp             TTTTSCSCCCSCSHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH-HHTC
T ss_pred             CcccccCccHHHHHHHHhHh----------hhHHHHHHHHHHHHHHHHHHHH-hCcC
Confidence                1112111112221111          2244566778888889999998 8874

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.85  E-value=2.9e-19  Score=179.66  Aligned_cols=246  Identities=13%  Similarity=0.069  Sum_probs=168.5

Q ss_pred             hHHHHHHHHHHHhc------CCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCC
Q 012238          103 LDVVKKAENLMLER------GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP  176 (467)
Q Consensus       103 ~~~v~~a~~~~~~~------~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~  176 (467)
                      .+.|.+++.+....      ...+.| +..|..+|++.+|+++...       ..++..|+.+|++|+.++  +...+.|
T Consensus        46 ~~~Vl~a~~~~~~~~~~~~~~~gy~Y-~~~g~~~Le~~lA~l~g~e-------~alv~p~~~sGt~A~~~a--l~all~p  115 (427)
T 3hvy_A           46 QLKVLKAFQEERISESHFTNSSGYGY-NDIGRDSLDRVYANIFNTE-------SAFVRPHFVNGTHAIGAA--LFGNLRP  115 (427)
T ss_dssp             HHHHHHHHHHTTCCGGGSCCCCTTCT-TCHHHHHHHHHHHHHHTCS-------EEEEETTCCSHHHHHHHH--HHHTCCT
T ss_pred             HHHHHHHHHHHHHHHHhcccCcCCCC-CchhHHHHHHHHHHHhCCC-------ceEEeCCCCcHHHHHHHH--HHHhcCC
Confidence            36677777775311      112345 3457899999999996542       223311258899999887  5566789


Q ss_pred             CCEEEEcC-CCCcchHH-----------HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC----CCC
Q 012238          177 GAKVLISS-PTWGNHKN-----------IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC----AHN  240 (467)
Q Consensus       177 gd~Vlv~~-P~y~~~~~-----------~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~----p~N  240 (467)
                      ||+|++++ |.|..+..           .++..|++++.++.   +++.+|++.+++.+++. +++++|++++    |+|
T Consensus       116 GD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~---~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~n  191 (427)
T 3hvy_A          116 NDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL---KDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWR  191 (427)
T ss_dssp             TCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC---BTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSS
T ss_pred             CCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC---CCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCC
Confidence            99999999 99988773           44667999998887   25679999999999742 3678888888    899


Q ss_pred             CCCCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCC-CccceEE
Q 012238          241 PTGIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMN  317 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~--~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~  317 (467)
                      |||.   ..++++|+++|++  +|+++++|++|..+.+..   .+  .    .. ...++++|+||+++.+| .+.||++
T Consensus       192 ptg~---v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~---~p--~----~~-gaDiv~~S~sK~lgg~g~~~GG~i~  258 (427)
T 3hvy_A          192 KSLR---IAEIAEIIKSIREVNENVIVFVDNCYGEFVEEK---EP--T----DV-GADIIAGSLIKNIGGGIATTGGYIA  258 (427)
T ss_dssp             CCCC---HHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSS---CG--G----GG-TCSEEEEETTSGGGTTTCCSCEEEE
T ss_pred             cccc---HHHHHHHHHHHHHhCCCCEEEEECCccccccCC---CC--c----cc-CCeEEEECCcccccccccceEEEEE
Confidence            9986   5778899999999  899999999998776431   11  1    11 23588999999998665 4457764


Q ss_pred             EecCCHHHHhhhhhhhHHHHHHHHHhhcc-Ccc---CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          318 VVCSSSDLAARCCEVAVIQVKSQLKRLAR-PMY---SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  393 (467)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~---~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~  393 (467)
                         +++++++.            ++.... ...   .+++...+.++...+          ..+..+.++..++..++.+
T Consensus       259 ---~~~~li~~------------l~~~~~~~~~g~~~~~~~~~a~~~~~gl----------~~~~~r~~~~~~~a~~la~  313 (427)
T 3hvy_A          259 ---GKEEYVTQ------------ATFRVTVPGIGGECGSTFGVMRSLYEGL----------FMAPHVTIEAVKGAVFCAR  313 (427)
T ss_dssp             ---ECHHHHHH------------HHHHHSCTTTGGGCCCCTTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred             ---ECHHHHHH------------HHHHhhcCCcccccCCCHHHHHHHHHhH----------hHHHHHHHHHHHHHHHHHH
Confidence               78888887            443221 111   122111122222111          2244677778888899999


Q ss_pred             HhhhccCC
Q 012238          394 SLSAKDKS  401 (467)
Q Consensus       394 ~l~~~~g~  401 (467)
                      .|+ ++|.
T Consensus       314 ~L~-~~g~  320 (427)
T 3hvy_A          314 IME-LAGF  320 (427)
T ss_dssp             HHH-HTTC
T ss_pred             HHH-hCCC
Confidence            999 8873

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.85  E-value=2.3e-20  Score=191.27  Aligned_cols=340  Identities=11%  Similarity=0.001  Sum_probs=208.6

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc---CCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER---GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      +.+.|||..|.+-..-+.  .+|.|.+++.+.+..   .....|.. ....++++++++.+....+.  ..++|++  ++
T Consensus        62 G~~ylD~~~g~~~~~lGh--~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~~--~~~~v~f--~~  134 (472)
T 1ohv_A           62 GNRMLDLYSQISSIPIGY--SHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAPK--GMSQLIT--MA  134 (472)
T ss_dssp             SCEEEESSHHHHTCSSCB--TCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCCT--TCCEEEE--ES
T ss_pred             CCEEEECCCCHhhcccCC--CCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCCC--CcCEEEE--eC
Confidence            457999999887332333  377888888776421   11123322 33568999999876543321  3568988  99


Q ss_pred             CchhHHHHHHHHHHHh------C-----------------CC---CEEEEcCCCCcchHHHH-hhCCCCe----------
Q 012238          159 SGTGSLRLAAALIERY------F-----------------PG---AKVLISSPTWGNHKNIF-NDARVPW----------  201 (467)
Q Consensus       159 ggt~al~l~~~~l~~~------~-----------------~g---d~Vlv~~P~y~~~~~~~-~~~G~~~----------  201 (467)
                      ||++|+..+.++....      .                 ||   ++|++.+++|..+.... ...|...          
T Consensus       135 sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~  214 (472)
T 1ohv_A          135 CGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD  214 (472)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCC
T ss_pred             CchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCC
Confidence            9999999985544211      0                 46   89999999998765543 3333211          


Q ss_pred             ---EEeeeec-C--CC--C-----CCChhhHHHHHHcCC---CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCe
Q 012238          202 ---SEYRYYD-P--KT--V-----GLDFEGMIADIKAAP---GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHI  264 (467)
Q Consensus       202 ---~~v~~~~-~--~~--~-----~~d~~~l~~~l~~~~---~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~  264 (467)
                         +.+|.+. +  ..  +     ..|++.|++.+++..   .++++|++...+|+||. .++.+.+++|.++|++||++
T Consensus       215 ~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~l  294 (472)
T 1ohv_A          215 WPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCA  294 (472)
T ss_dssp             CCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCE
T ss_pred             CcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCE
Confidence               1222100 0  00  0     126788888887421   16778888777889996 57899999999999999999


Q ss_pred             eEEeccCCCCCCCCCCCChhHHHHHHhcC--CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHH
Q 012238          265 PFFDVAYQGFASGSLDNDASSVRLFATRG--MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLK  342 (467)
Q Consensus       265 li~Deay~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~  342 (467)
                      +|+||+|.++...+   ..+....+ ...  .+   +.+|||.+ +.|   ||+   . ++++. .            +.
T Consensus       295 li~DEv~~g~g~~g---~~~~~~~~-gv~~~~D---i~t~sK~~-l~G---G~~---~-~~~~~-~------------~~  346 (472)
T 1ohv_A          295 FLVDEVQTGGGSTG---KFWAHEHW-GLDDPAD---VMTFSKKM-MTG---GFF---H-KEEFR-P------------NA  346 (472)
T ss_dssp             EEEECTTTTTTTTS---SSSGGGGG-CCSSCCS---EEEECGGG-SSE---EEE---E-CGGGS-C------------SS
T ss_pred             EEEeCcccCCCCCC---Cchhcccc-CCCCCCC---EEEEcccc-ccC---Ccc---C-chhhc-c------------cc
Confidence            99999998766432   11111111 110  22   34899995 345   766   2 44432 1            22


Q ss_pred             hhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCcccccCCcceEEecCC
Q 012238          343 RLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL  420 (467)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~--g~~~~~~~~~~~~g~f~~~~l  420 (467)
                      ......+.+.+.+++.++..+|+.  +    .+  +...++++++++++.+.|+ ++  +.|..+....+.+. |+++.+
T Consensus       347 ~~~~~~T~~~~~~~~aaa~aal~~--~----~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~~~v~~~~~~g~-~~~~~~  416 (472)
T 1ohv_A          347 PYRIFNTWLGDPSKNLLLAEVINI--I----KR--EDLLSNAAHAGKVLLTGLL-DLQARYPQFISRVRGRGT-FCSFDT  416 (472)
T ss_dssp             SSSSCCSSSSCHHHHHHHHHHHHH--H----HH--TTHHHHHHHHHHHHHHHHH-HHHHHCTTTCEEEEEETT-EEEEEC
T ss_pred             cccccCccCccHHHHHHHHHHHHH--H----Hh--CCHHHHHHHHHHHHHHHHH-HHHhhCCCcEEeecCCce-EEEEEe
Confidence            222223335566777766665531  1    11  2356677777888888777 54  22211222445555 444444


Q ss_pred             C-----HHHHHHHHHcccEEEeCCC----eEEec-cCChhhHHHHHHHHHHHHHhcC
Q 012238          421 N-----KAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDSYHNVS  467 (467)
Q Consensus       421 ~-----~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~~~i~~~~~~l~~~l~~~~  467 (467)
                      .     .++++.+++ +||.+.++|    ||+++ ..+++++++++++|++++++++
T Consensus       417 ~~~~~~~~~~~~l~~-~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~~  472 (472)
T 1ohv_A          417 PDESIRNKLISIARN-KGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADFK  472 (472)
T ss_dssp             SSHHHHHHHHHHHHH-TTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC-
T ss_pred             CChhHHHHHHHHHHH-CCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcC
Confidence            2     245667776 699999874    88655 2378999999999999998763

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.84  E-value=4.6e-19  Score=179.94  Aligned_cols=321  Identities=13%  Similarity=0.052  Sum_probs=187.4

Q ss_pred             cEEecCcccCCCCCCCCchHHHHHHH--HHHHhcCCCCcCCC--Ccc----hHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           85 KLNLGVGAYRTEELQPYVLDVVKKAE--NLMLERGENKEYLP--IEG----LAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        85 ~i~l~~G~~~d~~~~p~~~~~v~~a~--~~~~~~~~~~~Y~~--~~G----~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      ...++.|.|    +.+. |+.+.+++  ......  ...|.+  ..|    ..++++.++++++..      ++++++  
T Consensus        66 ~~~~~~g~~----~~~~-p~~v~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~la~~~g~~------~~~i~~--  130 (438)
T 1wyu_A           66 KAFLGGGVR----SHHV-PPVVQALAARGEFLTA--YTPYQPEVSQGVLQATFEYQTMIAELAGLE------IANASM--  130 (438)
T ss_dssp             TCCCCSSCC----CCCC-CHHHHHHHTSHHHHHC--CSCCSGGGCHHHHHHHHHHHHHHHHHHTSS------EECSCB--
T ss_pred             ccccCCCcc----CCcC-cHHHHHHHhcchhhhc--CCCCcchhhhhHHHHHHHHHHHHHHHhCCC------ccceEE--
Confidence            456777776    3332 56664444  222221  122321  334    457778888876432      567777  


Q ss_pred             cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEE
Q 012238          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~  232 (467)
                      +.|++.+.+.+...+ .+.+||+|+++.|+|+.+...+    +..|++++.++. +  ++.+|++.    ++   +++++
T Consensus       131 ~~g~taa~ea~~~a~-~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~--~~~~d~~~----i~---~~t~~  199 (438)
T 1wyu_A          131 YDGATALAEGVLLAL-RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL-E--GGRTPLPE----VG---EEVGA  199 (438)
T ss_dssp             SSHHHHHHHHHHHHH-HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC-B--TTBCCCCC----CC---TTEEE
T ss_pred             eCcHHHHHHHHHHHH-hcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC-c--CCccCHHH----hC---CCeEE
Confidence            899994444431112 3468999999999999887655    458999999986 2  35677776    43   57889


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc----cc
Q 012238          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL----GL  308 (467)
Q Consensus       233 i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~----~~  308 (467)
                      +++++| ||||.+.+   +++|+++|+++|+++|+|..-+.+..  .  .. +    ...+.+ +++.| +|.|    ++
T Consensus       200 v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a~g~--~--~~-~----~~~g~D-~~~~s-~kk~~~~~~~  264 (438)
T 1wyu_A          200 VVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLSLGV--L--KP-P----GAYGAD-IAVGD-GQSLGLPMGF  264 (438)
T ss_dssp             EEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTGGGT--B--CC-H----HHHTCS-EEEEE-CTTTTCCCGG
T ss_pred             EEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhhccC--c--CC-C----ccCCCC-EEEEC-CcccCCCccC
Confidence            999999 99999986   55777779999999996633111211  1  11 1    112334 44555 5544    46


Q ss_pred             CCCccceEEEecCCHHHHhhhhhh--hHH--------------HHHHHHHhhccCccCCC---chHHHHHHHHHhCChhh
Q 012238          309 YAERIGAMNVVCSSSDLAARCCEV--AVI--------------QVKSQLKRLARPMYSNP---PVHGARIVANVVGNPAL  369 (467)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~--~~~--------------~~~~~l~~~~~~~~~~~---~~~~~~~~~~~L~~~~~  369 (467)
                      .|.|+||++   .++++++.-...  +..              .-....+.. . ...+.   ..+....+...+.  .+
T Consensus       265 ~Gp~~G~l~---~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~-~-~t~~~~~~~~~~a~~aa~~l~--~~  337 (438)
T 1wyu_A          265 GGPHFGFLA---TKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRA-K-AKSNITTNAQLTALMGAMYLA--AL  337 (438)
T ss_dssp             GCSCCEEEE---ECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGG-G-SSCCCCSCCHHHHHHHHHHHH--HH
T ss_pred             CCCCeeEEE---EcHHHHHhCCCceeccccccCCCcceeeeccccccccchh-c-ccCCccchHHHHHHHHHHHHH--Hh
Confidence            677999996   556665540000  000              000000111 1 11222   2222221111121  01


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCcccccCCcceEE--ec--CCCH-HHHHHHHHcccEEE--eCC--
Q 012238          370 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFILRQIGMFS--FT--GLNK-AQSDNMTNKWHVYM--TKD--  439 (467)
Q Consensus       370 ~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~-g~~~~~~~~~~~~g~f~--~~--~l~~-~~~~~ll~~~gI~v--~~g--  439 (467)
                      .   .+.++++.+++.++++++.+.|+ ++ |    +++..+. .+|.  .+  +.+. ++.++|.+ +||.+  .++  
T Consensus       338 ~---~~g~~~~~~~~~~~~~~l~~~L~-~~~g----~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~-~gi~v~~~~~~~  407 (438)
T 1wyu_A          338 G---PEGLREVALKSVEMAHKLHALLL-EVPG----VRPFTPK-PFFNEFALALPKDPEAVRRALAE-RGFHGATPVPRE  407 (438)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHHHT-TSTT----CEECSCS-SBCSEEEEECSSCHHHHHHHHHH-TTCCCCEECCTT
T ss_pred             C---HHHHHHHHHHHHHHHHHHHHHHh-cCCC----eEECCCC-CeEEEEEEeCCCCHHHHHHHHHH-CCceeccccccc
Confidence            0   23367788889999999999999 76 5    4555443 3332  12  3344 44566665 59998  443  


Q ss_pred             ---C--eEEeccC-ChhhHHHHHHHHHHHH
Q 012238          440 ---G--RISLAGL-SLAKCEYLADAIIDSY  463 (467)
Q Consensus       440 ---g--Ris~~~~-~~~~i~~~~~~l~~~l  463 (467)
                         +  |||++.. +++++++++++|++++
T Consensus       408 ~~~~~lRis~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          408 YGENLALFAATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             SCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             cCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence               2  9998732 6789999999998865

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.83  E-value=7.9e-19  Score=175.34  Aligned_cols=149  Identities=13%  Similarity=0.108  Sum_probs=118.2

Q ss_pred             CCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH------
Q 012238          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER------  173 (467)
Q Consensus       100 p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~------  173 (467)
                      +.+++.+.+++.+.+...   .|.+..+..++|+++++++...        ++++  +.+|++++.++  +...      
T Consensus        11 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~~--------~~i~--~~sGt~a~~~a--l~~~~~~~~~   75 (390)
T 3b8x_A           11 STWDDLEYKAIQSVLDSK---MFTMGEYVKQYETQFAKTFGSK--------YAVM--VSSGSTANLLM--IAALFFTKKP   75 (390)
T ss_dssp             CCCCHHHHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHHTCS--------EEEE--ESCHHHHHHHH--HHHTTSSSSC
T ss_pred             CCCCHHHHHHHHHHHHcC---CCCCChHHHHHHHHHHHHHCCC--------cEEE--ECCHHHHHHHH--HHHHHhhhhc
Confidence            345788888888887652   3667789999999999997532        4555  68888999987  3433      


Q ss_pred             -hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHH
Q 012238          174 -YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWE  252 (467)
Q Consensus       174 -~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~  252 (467)
                       +.+||+|+++.|+|..+...++..|++++.++.+ ++++.+|++.+++.++   ++++++++++   ++|...   +++
T Consensus        76 ~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~---~~~~~v~~~~---~~g~~~---~~~  145 (390)
T 3b8x_A           76 RLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDID-INTLNIDIESLKEAVT---DSTKAILTVN---LLGNPN---NFD  145 (390)
T ss_dssp             SCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC-TTTCSBCHHHHHHHCC---TTEEEEEEEC---GGGCCC---CHH
T ss_pred             CCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC-ccccCcCHHHHHHHhC---cCCeEEEEEC---CccChh---hHH
Confidence             4589999999999999999999999999999985 3357899999999987   4677777753   455543   466


Q ss_pred             HHHHHHHhcCCeeEEeccCCC
Q 012238          253 KIADVIQEKNHIPFFDVAYQG  273 (467)
Q Consensus       253 ~l~~~~~~~~~~li~Deay~~  273 (467)
                      +|.++|+++|+++|+|++|..
T Consensus       146 ~i~~l~~~~~~~li~D~a~~~  166 (390)
T 3b8x_A          146 EINKIIGGRDIILLEDNCESM  166 (390)
T ss_dssp             HHHHHHTTSCCEEEEECTTCT
T ss_pred             HHHHHHHHcCCEEEEECcCcc
Confidence            788889999999999999874

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.83  E-value=4.8e-19  Score=181.91  Aligned_cols=325  Identities=8%  Similarity=-0.061  Sum_probs=212.3

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc--------CceeeeecCCchhHHHHHHHHHHH-
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE--------QRVATVQGLSGTGSLRLAAALIER-  173 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~--------~~i~~~~t~ggt~al~l~~~~l~~-  173 (467)
                      +..+.+.+...++.+. ..|....+..++++.+++++....|.+...        ...++  |.|||+++.++...... 
T Consensus        92 ~~~~~~~~~~~~n~~~-~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~--~~ggt~an~~al~~ar~~  168 (481)
T 4e1o_A           92 PSLLGDMLADAINCLG-FTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVL--QSTVSESTLIALLAARKN  168 (481)
T ss_dssp             HHHHHHHHHHHHCCCC-SSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEE--ESCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccc-CCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEE--eCchHHHHHHHHHHHHHH
Confidence            5566677777776553 678888899999999998887665543221        24566  89999999887332211 


Q ss_pred             ----------------hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEE
Q 012238          174 ----------------YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILL  234 (467)
Q Consensus       174 ----------------~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~  234 (467)
                                      ..+++.|+++.++|..+...++..|.+++.+|+  ++++.+|++.|++++++.   ...+++++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~--~~~~~~d~~~Le~~i~~~~~~g~~~~~vv  246 (481)
T 4e1o_A          169 KILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPV--DDNFSLRGEALQKAIEEDKQRGLVPVFVC  246 (481)
T ss_dssp             HHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEc--CCCCcCCHHHHHHHHHHHHhCCCCcEEEE
Confidence                            125789999999999999999999999999998  456889999999999752   12267788


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcccCCCcc
Q 012238          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERI  313 (467)
Q Consensus       235 i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~Ri  313 (467)
                      .+.++|+||.+-+   +++|+++|++||+++++|++|........   .  .+..... ..-..+..+++|.++.| .-.
T Consensus       247 ~~~~~t~~G~id~---l~~I~~la~~~~~~lhvDaA~g~~~~~~~---~--~~~~~~gi~~aDsi~~~~hK~l~~p-~g~  317 (481)
T 4e1o_A          247 ATLGTTGVCAFDC---LSELGPICAREGLWLHIDAAYAGTAFLCP---E--FRGFLKGIEYADSFTFNPSKWMMVH-FDC  317 (481)
T ss_dssp             EEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGGGGSG---G--GGGGGTTGGGCSEEEECHHHHSSCC-SSC
T ss_pred             EecCCCCCcCcCC---HHHHHHHHHHcCCeEEeehhhHHHHHhCh---h--hHHHhcCcccCCEEEEChHHhcCCC-Cce
Confidence            8899999998755   56788889999999999999877543211   0  1111111 11235567999988866 446


Q ss_pred             ceEEEecCCHHHHhhhhhhhHHHHHHHHHh---hccC---------------ccCCCchHHHHHHHHHhCChhhHHHHHH
Q 012238          314 GAMNVVCSSSDLAARCCEVAVIQVKSQLKR---LARP---------------MYSNPPVHGARIVANVVGNPALFDEWKA  375 (467)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~---~~~~---------------~~~~~~~~~~~~~~~~L~~~~~~~~~~~  375 (467)
                      |+++  +.+++....        .   +..   +...               .......+.+.++...+.        .+
T Consensus       318 g~l~--~~~~~~l~~--------~---~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g--------~~  376 (481)
T 4e1o_A          318 TGFW--VKDKYKLQQ--------T---FSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG--------VK  376 (481)
T ss_dssp             EEEE--ESBHHHHHT--------T---TCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH--------HH
T ss_pred             EEEE--EeCHHHHHH--------H---hcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH--------HH
Confidence            7765  466654432        0   100   0000               000112334444433331        23


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEec---CC---CHHHHHHHHHcccEEEeCC---C----eE
Q 012238          376 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT---GL---NKAQSDNMTNKWHVYMTKD---G----RI  442 (467)
Q Consensus       376 ~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~---~l---~~~~~~~ll~~~gI~v~~g---g----Ri  442 (467)
                      .++++.++..++++++.+.|+ +.+   ++++..+....++++   +.   +.++.+++.++..+++.++   |    |+
T Consensus       377 g~~~~~~~~~~~a~~l~~~L~-~~~---g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~  452 (481)
T 4e1o_A          377 NLQAHVRHGTEMAKYFESLVR-NDP---SFEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRF  452 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TCT---TEECCSCCCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-cCC---CeEEecCCceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEECCEEEEEE
Confidence            467788888999999999998 762   156554433333333   22   2345666666533554442   3    89


Q ss_pred             EeccC--ChhhHHHHHHHHHHHHHhc
Q 012238          443 SLAGL--SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       443 s~~~~--~~~~i~~~~~~l~~~l~~~  466 (467)
                      +++..  +++++++++++|+++.+++
T Consensus       453 ~~~~~~tt~~di~~~~~~i~~~~~~l  478 (481)
T 4e1o_A          453 TVTSQFTTRDDILRDWNLIRDAATLI  478 (481)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            87643  5789999999999988754

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.82  E-value=2.4e-18  Score=178.26  Aligned_cols=326  Identities=14%  Similarity=0.044  Sum_probs=198.5

Q ss_pred             hHHHH-HHHHHHHhcCCCCcCCCCcchHHH----HHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH----
Q 012238          103 LDVVK-KAENLMLERGENKEYLPIEGLAAF----NKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER----  173 (467)
Q Consensus       103 ~~~v~-~a~~~~~~~~~~~~Y~~~~G~~~l----r~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~----  173 (467)
                      ++.+. +.+....+.+ ...|....+..++    ++.++++++.    +  ++++++  |.|||+|+.++......    
T Consensus       121 ~~~~~~~~l~~~~n~~-~~~~~~s~~~~~le~~~~~~la~l~g~----~--~~~~~~--t~ggtea~~~al~~ar~~~~~  191 (515)
T 2jis_A          121 PHALAGRIITESLNTS-QYTYEIAPVFVLMEEEVLRKLRALVGW----S--SGDGIF--CPGGSISNMYAVNLARYQRYP  191 (515)
T ss_dssp             HHHHHHHHHHHHHCCC-TTCTTTCHHHHHHHHHHHHHHHHHHTC----S--SCEEEE--ESSHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhccC-CCchhhchHHHHHHHHHHHHHHHHhCC----C--CCCeEE--cCCcHHHHHHHHHHHHHHHhh
Confidence            44444 3444443332 2456555665444    4456666432    2  568888  99999998877333211    


Q ss_pred             -hC-CCC------EEEEcCCCCcchHHHHhhCCC---CeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCC
Q 012238          174 -YF-PGA------KVLISSPTWGNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAH  239 (467)
Q Consensus       174 -~~-~gd------~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~p~  239 (467)
                       +. +||      +|+++.++|+.+...++..|.   +++.+|++  +++.+|++.|++.+++.   ..++++|++++|+
T Consensus       192 ~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~  269 (515)
T 2jis_A          192 DCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKAD--ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGT  269 (515)
T ss_dssp             THHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSC
T ss_pred             HHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCC
Confidence             12 575      899999999999999998888   88999883  46789999999999741   1257899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      ||||.+.+.   ++|+++|+++|+++++|++|.++....... ...+   .......+++.|++|.++.| .++|+++  
T Consensus       270 n~tG~i~~l---~~I~~la~~~g~~l~vD~a~~~~~~~~~~~-~~~~---~g~~~aD~v~~s~hK~l~~p-~g~G~l~--  339 (515)
T 2jis_A          270 TVLGAFDPL---EAIADVCQRHGLWLHVDAAWGGSVLLSQTH-RHLL---DGIQRADSVAWNPHKLLAAG-LQCSALL--  339 (515)
T ss_dssp             TTTCCBCCH---HHHHHHHHHHTCEEEEEETTGGGGGGCTTT-GGGG---TTGGGCSEEEECTTSTTCCC-SCCEEEE--
T ss_pred             CCCCCccCH---HHHHHHHHHcCCeEEEehhhhhHHHhChhh-Hhhc---CCCccCCEEEECcccccCCC-CCeeEEE--
Confidence            999998774   577778999999999999998776532111 1111   11112347788999998744 5789986  


Q ss_pred             cCCH-HHHhhhhhhhHHHHHHHHHhhcc-------Cc------cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238          320 CSSS-DLAARCCEVAVIQVKSQLKRLAR-------PM------YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  385 (467)
Q Consensus       320 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~-------~~------~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~  385 (467)
                      +.++ ++++. +...   ....+.....       ..      ......+.+.++...+.        .+.++++.++..
T Consensus       340 ~~~~~~~~~~-~~~~---~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg--------~~g~~~~~~~~~  407 (515)
T 2jis_A          340 LQDTSNLLKR-CHGS---QASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG--------DQGLERRIDQAF  407 (515)
T ss_dssp             ESCCSCHHHH-HHCC------------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred             EeChHHHHHH-HhcC---CchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh--------HHHHHHHHHHHH
Confidence            4554 34432 0000   0000100000       00      00111333333333331        233667788888


Q ss_pred             HHHHHHHHHhhhccCCCCCccccc-CCcceEEecCC---------CHH-----------HHHHHHHcccEEE-e----CC
Q 012238          386 NVRQKLFDSLSAKDKSGKDWSFIL-RQIGMFSFTGL---------NKA-----------QSDNMTNKWHVYM-T----KD  439 (467)
Q Consensus       386 ~~r~~l~~~l~~~~g~~~~~~~~~-~~~g~f~~~~l---------~~~-----------~~~~ll~~~gI~v-~----~g  439 (467)
                      ++++++.+.|+ +..  + +++.. +..+.++|...         +.+           ..+.+.+ .|+.+ .    ++
T Consensus       408 ~~a~~l~~~L~-~~~--g-~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~-~G~~~~~~~~~~~  482 (515)
T 2jis_A          408 VLARYLVEEMK-KRE--G-FELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVK-EGSMMIGYQPHGT  482 (515)
T ss_dssp             HHHHHHHHHHH-TST--T-EEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHH-HTSCEEEEEEETT
T ss_pred             HHHHHHHHHHh-cCC--C-EEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHh-cCCEEEEEEEECC
Confidence            99999999998 652  1 55543 33455555211         111           2334554 47543 2    23


Q ss_pred             --C--eEEec-c-CChhhHHHHHHHHHHHHHhc
Q 012238          440 --G--RISLA-G-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 --g--Ris~~-~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                        +  ||+++ . .+++++++++++|+++++++
T Consensus       483 ~~~~lRis~~~~~~t~edid~~~~~l~~~~~~~  515 (515)
T 2jis_A          483 RGNFFRVVVANSALTCADMDFLLNELERLGQDL  515 (515)
T ss_dssp             EEEEEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred             ceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Confidence              2  99985 2 27799999999999988754

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.81  E-value=2.1e-18  Score=176.79  Aligned_cols=335  Identities=10%  Similarity=-0.008  Sum_probs=208.1

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc-------CceeeeecCCchhHHHHHHHHHHH--
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-------QRVATVQGLSGTGSLRLAAALIER--  173 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~-------~~i~~~~t~ggt~al~l~~~~l~~--  173 (467)
                      +..+.+.+...++.+. ..|....+..++++.+++|+....|.+...       ...++  |.|||+++.++......  
T Consensus        87 ~~~~~~~l~~~~n~~~-~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~--t~ggt~anl~al~~ar~~~  163 (475)
T 3k40_A           87 PAIVADMLSGAIACIG-FTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVI--QGTASESTLVALLGAKAKK  163 (475)
T ss_dssp             HHHHHHHHHHHHCCCS-SSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEE--ESCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccc-cCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEE--cCchHHHHHHHHHHHHHHH
Confidence            4556666666666543 668788899999999988887666654221       24666  89999998876322211  


Q ss_pred             ---------------hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEe
Q 012238          174 ---------------YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLH  235 (467)
Q Consensus       174 ---------------~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i  235 (467)
                                     +.+++.|+++.++|..+...++..|++++.+|++  +++ +|++.|++.+++.   ...+++++.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d--~~~-~d~~~L~~~i~~~~~~~~~~~~v~~  240 (475)
T 3k40_A          164 LKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE--NHR-MRGAALEKAIEQDVAEGLIPFYAVV  240 (475)
T ss_dssp             HHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCB--TTB-CCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECC--CCC-cCHHHHHHHHHHHHHCCCccEEEEE
Confidence                           1135689999999999999999999999999984  356 9999999999752   122677888


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcccCCCccc
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIG  314 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG  314 (467)
                      +.++|+||.+-+   +++|+++|++||+++++|++|........   .  .+..... ..-..+..+++|.++.| ..+|
T Consensus       241 ~~~~t~~G~~~~---l~~I~~la~~~~~~lhvD~A~~~~~~~~~---~--~~~~~~gi~~~Ds~~~~~hK~l~~p-~g~g  311 (475)
T 3k40_A          241 TLGTTNSCAFDY---LDECGPVGNKHNLWIHVDAAYAGSAFICP---E--YRHLMKGIESADSFNFNPHKWMLVN-FDCS  311 (475)
T ss_dssp             EBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSG---G--GGGGGTTGGGCSEEEECHHHHSSCC-SSCE
T ss_pred             EecCCCCcCcCC---HHHHHHHHHHhCCeEEEeHHhHHHHHhCH---h--hHHHhcCcccCCEEEECchhccCCC-CceE
Confidence            899999999755   55788889999999999999876432110   0  0011110 11246678999987644 4567


Q ss_pred             eEEEecCCHHHHhhh--hhhhHHHHHH--HHHhhccCcc-CC--CchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012238          315 AMNVVCSSSDLAARC--CEVAVIQVKS--QLKRLARPMY-SN--PPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  387 (467)
Q Consensus       315 ~~~~v~~~~~~~~~~--~~~~~~~~~~--~l~~~~~~~~-~~--~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~  387 (467)
                      +++  +.+++.....  ....+..-..  .......... .+  ...+.+.++...+.        .+.++++.++..++
T Consensus       312 ~l~--~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g--------~~g~~~~~~~~~~~  381 (475)
T 3k40_A          312 AMW--LKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG--------VENLQAHIRRHCNF  381 (475)
T ss_dssp             EEE--ESSGGGC---------------------------CCCGGGTHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred             EEE--EeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHh--------HHHHHHHHHHHHHH
Confidence            775  4665543210  0000000000  0000000000 00  11223333332221        23467788888999


Q ss_pred             HHHHHHHhhhccCCCCCcccccC-CcceEEec--CC---CHHHHHHHHHcccEEEeCC---C----eEEeccC--ChhhH
Q 012238          388 RQKLFDSLSAKDKSGKDWSFILR-QIGMFSFT--GL---NKAQSDNMTNKWHVYMTKD---G----RISLAGL--SLAKC  452 (467)
Q Consensus       388 r~~l~~~l~~~~g~~~~~~~~~~-~~g~f~~~--~l---~~~~~~~ll~~~gI~v~~g---g----Ris~~~~--~~~~i  452 (467)
                      ++++.+.|+ +++   ++++..+ ..++..|.  +.   +.++.+++.++.++++.++   |    |++++..  +++++
T Consensus       382 a~~l~~~L~-~~~---g~~l~~~~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di  457 (475)
T 3k40_A          382 AKQFGDLCV-ADS---RFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDM  457 (475)
T ss_dssp             HHHHHHHHH-HST---TEEESSCCBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHH
T ss_pred             HHHHHHHHh-cCC---CEEEecCCceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHH
Confidence            999999998 762   1565544 33433331  22   2345667776644454442   3    9997642  67899


Q ss_pred             HHHHHHHHHHHHhc
Q 012238          453 EYLADAIIDSYHNV  466 (467)
Q Consensus       453 ~~~~~~l~~~l~~~  466 (467)
                      ++++++|+++.+++
T Consensus       458 ~~~~~~i~~~~~~~  471 (475)
T 3k40_A          458 EYSWKEVSAAADEM  471 (475)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.79  E-value=3.2e-18  Score=182.37  Aligned_cols=175  Identities=11%  Similarity=-0.040  Sum_probs=124.0

Q ss_pred             CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-HhhCCCCeE
Q 012238          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-FNDARVPWS  202 (467)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~-~~~~G~~~~  202 (467)
                      +..-..++++.+|++++..       ..+++  ++|+++++..+  +.+.+.+||+|+++.|+|..+... ++..|++++
T Consensus       171 ~~~~i~e~e~~lA~~~gae-------~~i~v--~nGtt~an~~a--i~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v  239 (730)
T 1c4k_A          171 HEGPAVAAEKHAARVYNAD-------KTYFV--LGGSSNANNTV--TSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPV  239 (730)
T ss_dssp             TBTHHHHHHHHHHHHTTCS-------EEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEE
T ss_pred             ChHHHHHHHHHHHHHHCCC-------cEEEE--CCHHHHHHHHH--HHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEE
Confidence            4445789999999996432       24666  88888999987  556678999999999999988887 889999999


Q ss_pred             EeeeecCCCCC----CChhhH-----HHHHHcCCCC---c----EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012238          203 EYRYYDPKTVG----LDFEGM-----IADIKAAPGG---S----FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF  266 (467)
Q Consensus       203 ~v~~~~~~~~~----~d~~~l-----~~~l~~~~~~---~----~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li  266 (467)
                      .++...+ .++    +|++.+     ++++++.+++   +    +++++++| ||||.+.+.   ++|+++|+++|++++
T Consensus       240 ~v~~~~~-~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl---~~I~~la~~~g~~li  314 (730)
T 1c4k_A          240 YLQTNRN-PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNA---HEVVKRIGHLCDYIE  314 (730)
T ss_dssp             EECEEEC-TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECH---HHHHHHHGGGBSEEE
T ss_pred             EEeCCcc-ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCH---HHHHHHHHHcCCeEE
Confidence            8877432 333    799999     8888742100   2    67778888 699999875   577888999999999


Q ss_pred             EeccCCCC-CCCCCCCC-hhHHHH--HHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          267 FDVAYQGF-ASGSLDND-ASSVRL--FATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       267 ~Deay~~~-~~~~~~~~-~~~~~~--~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                      +||+|... .++.. .. ...+..  +....++++++.|+||.+  +|.+.|+++
T Consensus       315 vDeAh~~~~~f~~~-~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I  366 (730)
T 1c4k_A          315 FDSAWVGYEQFIPM-MRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQI  366 (730)
T ss_dssp             EECTTCCGGGSSGG-GGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEE
T ss_pred             EEcccccccccCcc-cCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEE
Confidence            99998642 33210 00 000100  001123679999999975  567777665

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.76  E-value=2.8e-17  Score=176.55  Aligned_cols=175  Identities=13%  Similarity=0.072  Sum_probs=123.4

Q ss_pred             CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEe
Q 012238          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEY  204 (467)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v  204 (467)
                      ..-..++++.+++++..       .+.+++  ++|+++++..+  +.+.+.|||+|+++.|+|..+...++..|++++.+
T Consensus       204 ~g~v~~~ee~la~l~G~-------d~~i~~--~~Gtt~a~~~~--i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v  272 (755)
T 2vyc_A          204 TGAFGESEKYAARVFGA-------DRSWSV--VVGTSGSNRTI--MQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYM  272 (755)
T ss_dssp             CHHHHHHHHHHHHHHTC-------SEEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEE
T ss_pred             ccHHHHHHHHHHHHhCC-------CceEEE--CCcHHHHHHHH--HHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEE
Confidence            34467788888888643       234666  88889999987  55567899999999999999888888999999999


Q ss_pred             eeecCCCCC----C-----ChhhHHHHHHcCCC-------CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEe
Q 012238          205 RYYDPKTVG----L-----DFEGMIADIKAAPG-------GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFD  268 (467)
Q Consensus       205 ~~~~~~~~~----~-----d~~~l~~~l~~~~~-------~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~D  268 (467)
                      +...+ .++    +     |++.+++++++.+.       +++++++++| ||||.+.+.   ++|+++|++||+++++|
T Consensus       273 ~~~~~-~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl---~~I~~ia~~~~~~livD  347 (755)
T 2vyc_A          273 VPSRN-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNA---KEAQDLLEKTSDRLHFD  347 (755)
T ss_dssp             CCCBC-TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECH---HHHHHHHTTTCSEEEEE
T ss_pred             eCCCC-ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCH---HHHHHHHHHcCCEEEEE
Confidence            87422 233    5     99999999975321       1236777888 799999875   57778899999999999


Q ss_pred             ccCCCC-CCCCCCCChhHHHHH--Hh-cCCeEEEEecCccCcccCCCccceEEE
Q 012238          269 VAYQGF-ASGSLDNDASSVRLF--AT-RGMELLVAQSYSKNLGLYAERIGAMNV  318 (467)
Q Consensus       269 eay~~~-~~~~~~~~~~~~~~~--~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (467)
                      ++|... .++..-.+...+ ..  .+ ..++++++.|+||.+  +|.+.|.+++
T Consensus       348 eA~~~~~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~  398 (755)
T 2vyc_A          348 EAWYGYARFNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLL--NALSQASYIH  398 (755)
T ss_dssp             CTTCTTGGGCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEE
T ss_pred             CcCchhcccCcccCCcchh-cCCcCCccCCCeEEEECccccc--cCcCCeeeee
Confidence            998643 222100000111 01  11 234778999999985  5777565543

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.73  E-value=5.6e-17  Score=160.95  Aligned_cols=319  Identities=12%  Similarity=0.002  Sum_probs=187.2

Q ss_pred             CCCCchHHHHHHHHHHHhc----CC------CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHH
Q 012238           98 LQPYVLDVVKKAENLMLER----GE------NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLA  167 (467)
Q Consensus        98 ~~p~~~~~v~~a~~~~~~~----~~------~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~  167 (467)
                      +..++++.|++++.+.+..    +.      ........-+.+.|+.++++++...     +++|+++ |.|||++++++
T Consensus        34 gpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~-----~~evif~-t~~~T~a~n~a  107 (386)
T 3qm2_A           34 GPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPS-----NYKVLFC-HGGGRGQFAGV  107 (386)
T ss_dssp             SSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCT-----TEEEEEE-ESCTTHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-----CceEEEE-cCCchHHHHHH
Confidence            4445689999998765421    00      0011113457899999999986531     2466661 48999999998


Q ss_pred             HHHHHHhCCCCEEEEcCCCCcc--hHHHHhhCCCCeEEeeee-cCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCC
Q 012238          168 AALIERYFPGAKVLISSPTWGN--HKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGI  244 (467)
Q Consensus       168 ~~~l~~~~~gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~  244 (467)
                        +...+.+||+|++..-+...  +...++..| ++..++.+ ++++..++++.+++.++   ++++++.+++..|.||+
T Consensus       108 --i~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~---~~t~lV~~~h~et~tG~  181 (386)
T 3qm2_A          108 --PLNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLS---DNAAYLHYCPNETIDGI  181 (386)
T ss_dssp             --HHHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCC---TTCSCEEECSEETTTTE
T ss_pred             --HHhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcC---CCCcEEEEECCcCCcCE
Confidence              55567799998755544332  334556778 88888874 12222367777776665   56778888888888899


Q ss_pred             C-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCH
Q 012238          245 D-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (467)
Q Consensus       245 ~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~  323 (467)
                      . .+.+++   .     +|+++++|.+ +.+..-..+.+         .. + +.+.|-.|.+|++|  +|+++   ..+
T Consensus       182 ~i~pi~~i---~-----~g~~~~vDa~-qs~g~~pidv~---------~~-~-~~~~s~hK~lGP~G--~g~l~---v~~  236 (386)
T 3qm2_A          182 AIDETPDF---G-----PEVVVTADFS-STILSAPLDVS---------RY-G-VIYAGAQKNIGPAG--LTLVI---VRE  236 (386)
T ss_dssp             ECCCCCCC---C-----TTCCEEEECT-TTTTSSCCCGG---------GC-S-EEEEETTTTTCCTT--EEEEE---EEG
T ss_pred             ecCchhhh---c-----CCCEEEEEcc-cccCCCCCCcc---------cc-C-EEEEecccccCCCc--cEEEE---ECH
Confidence            6 665543   2     7999999999 55544322221         11 2 45688899999888  57776   333


Q ss_pred             HHHhhhhh--hhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          324 DLAARCCE--VAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       324 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      +..+...+  +.+.+.........+..+.+.+.  ..++..+++   +.  .+. .++++.++.++.++++++.|+ +++
T Consensus       237 ~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~--i~~l~~Al~---~~--~~~gG~~~i~~~~~~l~~~l~~~l~-~~~  308 (386)
T 3qm2_A          237 DLLGKAHESCPSILDYTVLNDNDSMFNTPPTFA--WYLSGLVFK---WL--KAQGGVAAMHKINQQKAELLYGVID-NSD  308 (386)
T ss_dssp             GGCSCCCTTSCGGGCHHHHHHC-------CCSH--HHHHHHHHH---HH--HHHTHHHHHHHHHHHHHHHHHHHHH-TCS
T ss_pred             HHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHH--HHHHHHHHH---HH--HHhcCHHHHHHHHHHHHHHHHHHHH-HCC
Confidence            33322000  00101111111111222223332  223333331   10  122 377888999999999999998 776


Q ss_pred             CCCCcccc-cC--C-cce--EEecC--CCHHHHHHHHHcccEEEeCC----C--eEEeccC-ChhhHHHHHHHHHHHHHh
Q 012238          401 SGKDWSFI-LR--Q-IGM--FSFTG--LNKAQSDNMTNKWHVYMTKD----G--RISLAGL-SLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       401 ~~~~~~~~-~~--~-~g~--f~~~~--l~~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~~~i~~~~~~l~~~l~~  465 (467)
                      +   .... .+  . .+.  |.+.+  ++.+++.. ++++||.+.+|    |  |+|+... +++++++++++|+++.++
T Consensus       309 ~---~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~-L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~~  384 (386)
T 3qm2_A          309 F---YRNDVAQANRSRMNVPFQLADNTLDKVFLEE-SFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERR  384 (386)
T ss_dssp             S---EECCBCGGGBCSSEEEEEESSGGGHHHHHHH-HHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             C---cccCCCHHHcCceEEEEECCCccccHHHHHH-HHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence            3   1111 11  1 122  22232  34444555 55679999887    3  9998764 679999999999998875

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.73  E-value=2.5e-17  Score=162.63  Aligned_cols=315  Identities=13%  Similarity=0.053  Sum_probs=192.9

Q ss_pred             CCCchHHHHHHHHHHHhcCC---CC----c-CCC--CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHH
Q 012238           99 QPYVLDVVKKAENLMLERGE---NK----E-YLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAA  168 (467)
Q Consensus        99 ~p~~~~~v~~a~~~~~~~~~---~~----~-Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~  168 (467)
                      ..++|+.|.+++.+.+....   ..    . ..+  ..-+.+.|+.++++++...     +++|++ .|.|||++++++ 
T Consensus        21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~-----~~evif-~t~~~T~a~n~a-   93 (377)
T 3e77_A           21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPD-----NYKVIF-LQGGGCGQFSAV-   93 (377)
T ss_dssp             SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCT-----TEEEEE-ESSHHHHHHHHH-
T ss_pred             cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-----CCeEEE-EcCchHHHHHHH-
Confidence            33458999999988763200   00    0 111  2236788899999986531     246766 147999999998 


Q ss_pred             HHHHHhCC--CCEEEEcCCCCcc--hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCC
Q 012238          169 ALIERYFP--GAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGI  244 (467)
Q Consensus       169 ~~l~~~~~--gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~  244 (467)
                       +...+.+  ||+|++..-++..  +...++..|..++.++.  +++++.+++.++..++   ++++++.+++..|.||+
T Consensus        94 -~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~--~~~~~~~~~~~~~~i~---~~t~lV~~~h~et~tG~  167 (377)
T 3e77_A           94 -PLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPK--LGSYTKIPDPSTWNLN---PDASYVYYCANETVHGV  167 (377)
T ss_dssp             -HHHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCC--CSSSCSCCCGGGCCCC---TTCSCEEEESEETTTTE
T ss_pred             -HHhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEecc--CCCcCCCCChHHhccC---CCccEEEEeCccCchhe
Confidence             4445544  9999877665533  34456677877776666  3345677777755554   56777888888888899


Q ss_pred             CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHH
Q 012238          245 DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (467)
Q Consensus       245 ~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~  324 (467)
                      +.+.        +|+++|+++++|.+ +.+.....+.+.        .  + +++.|-.|.+|++|  +|+++   ..++
T Consensus       168 ~~pi--------i~~~~~~~~~vD~~-q~~g~~~id~~~--------~--~-~~~~s~~K~~gp~G--~g~l~---~~~~  222 (377)
T 3e77_A          168 EFDF--------IPDVKGAVLVCDMS-SNFLSKPVDVSK--------F--G-VIFAGAQKNVGSAG--VTVVI---VRDD  222 (377)
T ss_dssp             ECSS--------CCCCTTCCEEEECT-TTTTSSCCCGGG--------C--S-EEEEEGGGTTSCTT--CEEEE---EETT
T ss_pred             Echh--------hhccCCCEEEEEcc-cccCCCCCchhh--------c--C-EEEEecccccCCCc--cEEEE---EcHH
Confidence            9986        26789999999999 555543222211        1  2 46788899999888  47775   2233


Q ss_pred             HHhhhhh---hhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcc-
Q 012238          325 LAARCCE---VAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLFDSLSAKD-  399 (467)
Q Consensus       325 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~l~~~~~~~~~~r~~l~~~l~~~~-  399 (467)
                      +.+. ++   +.+.++....+..  ..+..++.....++..+|+   +.  .+. .++++.++.++..+++++.|+ ++ 
T Consensus       223 ~l~~-~~~~~p~~~~~~~~~~~~--~~~~Tp~v~~i~~l~~al~---~l--~~~GG~~~i~~~~~~l~~~l~~~L~-~~~  293 (377)
T 3e77_A          223 LLGF-ALRECPSVLEYKVQAGNS--SLYNTPPCFSIYVMGLVLE---WI--KNNGGAAAMEKLSSIKSQTIYEIID-NSQ  293 (377)
T ss_dssp             SCSC-CCTTSCGGGCHHHHHTTT--TCSSCCCHHHHHHHHHHHH---HH--HHTTHHHHHHHHHHHHHHHHHHHHH-TST
T ss_pred             HHhh-ccCCCCchhhHHHHhhcC--CCCCCchHHHHHHHHHHHH---HH--HHccCHHHHHHHHHHHHHHHHHHHH-hcC
Confidence            3222 00   1111111111111  1122344444334433332   10  122 377888999999999999999 76 


Q ss_pred             CCCCCccccc----CCcce---EEecCCC--H----HHHHHHHHcccEEEeCC----C--eEEeccC-ChhhHHHHHHHH
Q 012238          400 KSGKDWSFIL----RQIGM---FSFTGLN--K----AQSDNMTNKWHVYMTKD----G--RISLAGL-SLAKCEYLADAI  459 (467)
Q Consensus       400 g~~~~~~~~~----~~~g~---f~~~~l~--~----~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~~~i~~~~~~l  459 (467)
                      |+    ...+    ...+.   |.+.+++  .    .++..+. ++||.+.+|    |  |+|+... +++++++++++|
T Consensus       294 g~----~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~-~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al  368 (377)
T 3e77_A          294 GF----YVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKAL-ELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFM  368 (377)
T ss_dssp             TS----EECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHH-HTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHH
T ss_pred             Cc----eecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHH-HCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHH
Confidence            42    3111    11222   3334442  2    3344444 569999887    3  9998764 779999999999


Q ss_pred             HHHHHh
Q 012238          460 IDSYHN  465 (467)
Q Consensus       460 ~~~l~~  465 (467)
                      ++++++
T Consensus       369 ~~~~~~  374 (377)
T 3e77_A          369 KKFLEM  374 (377)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.72  E-value=2.1e-16  Score=155.36  Aligned_cols=322  Identities=10%  Similarity=0.046  Sum_probs=193.8

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhc---CCCC----cCCC---CcchHHHHHHHHHHHhCCCCcccccCcee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER---GENK----EYLP---IEGLAAFNKVTAELLFGADNSVLKEQRVA  153 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~---~~~~----~Y~~---~~G~~~lr~aia~~l~~~~~~~~~~~~i~  153 (467)
                      ++++|+.|.       .++++.|++++.+.+..   +...    .+..   ..-+.+.|+.++++++...     +.+|+
T Consensus         5 ~~~~f~pgp-------t~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~-----~~~v~   72 (361)
T 3m5u_A            5 RKINFSAGP-------STLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELND-----DYEVL   72 (361)
T ss_dssp             CCEECCSSS-------CCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCT-----TEEEE
T ss_pred             ceEeecCCC-------CCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCC-----CceEE
Confidence            678888652       33588999999886632   0000    1101   2346788899999986531     33554


Q ss_pred             eeecCCchhHHHHHHHHHHHhCCCCEEE-EcCCCCc-chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcE
Q 012238          154 TVQGLSGTGSLRLAAALIERYFPGAKVL-ISSPTWG-NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (467)
Q Consensus       154 ~~~t~ggt~al~l~~~~l~~~~~gd~Vl-v~~P~y~-~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (467)
                      ++ |.|||++++++  +...+ +||+++ +..-.|. .+...++..|+++..++.+.+..+.++++.  + ++   ++++
T Consensus        73 f~-t~~~T~a~n~~--~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~---~~t~  142 (361)
T 3m5u_A           73 FL-QGGASLQFAMI--PMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV--E-FS---DNAD  142 (361)
T ss_dssp             EE-SSHHHHHHHHH--HHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CC---TTSS
T ss_pred             EE-cCcHHHHHHHH--HHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh--h-cC---CCCC
Confidence            32 89999999998  44455 888763 3333332 234456778999999998432212246665  3 55   5677


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCC
Q 012238          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (467)
Q Consensus       232 ~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~  311 (467)
                      ++.+++..|.||+..+.     |   ++ +|+++++|.+ +.+.....+.+           .-.+++.|..|.+|++| 
T Consensus       143 lv~~~~~e~~tG~~~~~-----i---~~-~~~~~~vD~~-q~~g~~~id~~-----------~~d~~~~s~~K~~gp~G-  200 (361)
T 3m5u_A          143 YAYICSNNTIYGTQYQN-----Y---PK-TKTPLIVDAS-SDFFSRKVDFS-----------NIALFYGGVQKNAGISG-  200 (361)
T ss_dssp             EEEEESEETTTTEECSS-----C---CC-CSSCEEEECG-GGTTSSCCCCT-----------TEEEEEEETTTTSSCTT-
T ss_pred             EEEEeCCCCCcceeCCc-----c---cc-cCCEEEEEcc-cccCCCCCCcc-----------cCCEEEEechhccCCCc-
Confidence            88888888888998762     3   33 4999999998 55554333222           12377889999999888 


Q ss_pred             ccceEEEecCCHHHHhhhhh---hhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH--HHHHHHHHHHH
Q 012238          312 RIGAMNVVCSSSDLAARCCE---VAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA--EMEMMAGRIKN  386 (467)
Q Consensus       312 RiG~~~~v~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~--~l~~~~~~~~~  386 (467)
                       +|+++   ..+++.+...+   +.+.+........  ..+..++.....++..+|+   +   ..+  .++++.++.++
T Consensus       201 -~g~l~---~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~~~Tp~v~~i~~l~~al~---~---l~~~gG~~~i~~~~~~  268 (361)
T 3m5u_A          201 -LSCIF---IRKDMLERSKNKQIPSMLNYLTHAENQ--SLFNTPPTFAIYMFNLEMD---W---LLNQGGLDKVHEKNSQ  268 (361)
T ss_dssp             -CEEEE---EEHHHHHHHHTCCCCGGGCHHHHHHTT--TCSSCCCHHHHHHHHHHHH---H---HHTTTCHHHHHHHHHH
T ss_pred             -cEEEE---EcHHHHhhhcCCCCCceeehHHHhhcC--CCCCCccHHHHHHHHHHHH---H---HHHccCHHHHHHHHHH
Confidence             57775   44555544100   1111111111111  1122344443333333332   1   012  26788888999


Q ss_pred             HHHHHHHHhhhccCCCCCc-ccc-cC---CcceE--EecC---CCHHHHHHHHHcccEEEeCC----C--eEEeccC-Ch
Q 012238          387 VRQKLFDSLSAKDKSGKDW-SFI-LR---QIGMF--SFTG---LNKAQSDNMTNKWHVYMTKD----G--RISLAGL-SL  449 (467)
Q Consensus       387 ~r~~l~~~l~~~~g~~~~~-~~~-~~---~~g~f--~~~~---l~~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~  449 (467)
                      .++++++.|+ +++-   + ... .+   ..+..  .+.+   ++.++. ..++++||.+.+|    |  |+|+... ++
T Consensus       269 l~~~l~~~L~-~~~g---~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~-~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~  343 (361)
T 3m5u_A          269 KATMLYECID-LSNG---FYKGHADKKDRSLMNVSFNIAKNKDLEPLFV-KEAEEAGMIGLKGHRILGGIRASIYNALNL  343 (361)
T ss_dssp             HHHHHHHHHH-TSTT---SEEESSCGGGBCSSEEEEEESSCTTHHHHHH-HHHHHTTEECCBCCTTTCSEEEECCTTSCH
T ss_pred             HHHHHHHHHH-HCCC---eeeccCCHHHcCCeEEEEECCCchhhhHHHH-HHHHHCCCEEecCCCccCeEEEEccCCCCH
Confidence            9999999998 7751   2 221 11   11222  2233   233344 4556679999887    3  9998764 67


Q ss_pred             hhHHHHHHHHHHHHHhc
Q 012238          450 AKCEYLADAIIDSYHNV  466 (467)
Q Consensus       450 ~~i~~~~~~l~~~l~~~  466 (467)
                      +++++++++|+++.++.
T Consensus       344 edId~l~~al~~~~~~~  360 (361)
T 3m5u_A          344 DQVKTLCEFMKEFQGKY  360 (361)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999998763

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.70  E-value=1.7e-15  Score=152.75  Aligned_cols=331  Identities=13%  Similarity=0.056  Sum_probs=198.3

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.||+..|.-...-|.  -.|.|.+|+.+.+....... .+..-..++.+.+++++..       .+.+.+  +++|+
T Consensus        86 G~~ylD~~~g~~~~~lGH--~hp~v~~Av~~q~~~~~~~~-~~~~~~~~lae~l~~~~p~-------~~~v~f--~~SGs  153 (454)
T 4ao9_A           86 GHRYADFIAEYTAGVYGH--SAPEIRDAVIEAMQGGINLT-GHNLLEGRLARLICERFPQ-------IEQLRF--TNSGT  153 (454)
T ss_dssp             CCEEEESSGGGGTTTTCS--CCHHHHHHHHHHHHTCSCCC-SEESSHHHHHHHHHHHSTT-------CSEEEE--ESSHH
T ss_pred             CCEEEEccccHHhhcccC--CCHHHHHHHHHHHhcCCCcc-CCcHHHHHHHHHHHHhCCC-------CCEEEE--eCchH
Confidence            457899987754222233  36889999988886643222 2344456777778877532       468888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh----CCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND----ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~----~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~  237 (467)
                      +|...+.++.......++|+...-+|......+-.    .+........  +   ..|.+.+++.+++..+....|++-.
T Consensus       154 EA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~--p---~nd~~~l~~~l~~~~~~iAavIvEP  228 (454)
T 4ao9_A          154 EANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVL--P---YNDAQTARAQIERHGPEIAVVLVEP  228 (454)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEE--C---TTCHHHHHHHHHHTGGGEEEEEECS
T ss_pred             HHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccC--C---CchHHHHHHHHhhcCCceEEEEecc
Confidence            99999866554444557999999998764322111    1111111111  1   1488999999987655666777666


Q ss_pred             CCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceE
Q 012238          238 AHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (467)
Q Consensus       238 p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~  316 (467)
                      .+.-.|.+. +++.+++|.++|++||+++|+||+..+ ..+.    .+.. ....-.++++   +++|.+| .|+.+|.+
T Consensus       229 v~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG-R~G~----~~a~-e~~gv~PDi~---t~gK~lg-gG~Piga~  298 (454)
T 4ao9_A          229 MQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-RLAP----HGLA-NKLGIRSDLT---TLGKYIG-GGMSFGAF  298 (454)
T ss_dssp             EESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG-GGST----TCHH-HHHTCCCSEE---EEEGGGG-TTSSCEEE
T ss_pred             ccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC-CCcc----ccch-hccCCCCcEE---EeccccC-CCCcceee
Confidence            666677654 577899999999999999999999754 2221    1111 2222234443   5679998 78999998


Q ss_pred             EEecCCHHHHhhhhhhhHHHHHHHHHhhc----cCccCCCchHHHHHHHHHh---CChhhHHHHHHHHHHHHHHHHHHHH
Q 012238          317 NVVCSSSDLAARCCEVAVIQVKSQLKRLA----RPMYSNPPVHGARIVANVV---GNPALFDEWKAEMEMMAGRIKNVRQ  389 (467)
Q Consensus       317 ~~v~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~L---~~~~~~~~~~~~l~~~~~~~~~~r~  389 (467)
                      .   +.+++++.            +....    ...+.+.++++..++...|   .++++    .+.+.+..++   .++
T Consensus       299 ~---~~~ei~~~------------~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~----~~~~~~~g~~---l~~  356 (454)
T 4ao9_A          299 G---GRADVMAL------------FDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEA----AGALAERGEA---LRA  356 (454)
T ss_dssp             E---ECHHHHGG------------GCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHH----HHHHHHHHHH---HHH
T ss_pred             e---eHHHHHHH------------HhhccCCccccCCCCCCHHHHHHHHHHHHHHhccCh----hHHHHHHHHH---HHH
Confidence            4   78887776            43211    1112344555555554444   33322    1222222222   233


Q ss_pred             HHHHHhhhccCCCCCcccccCCcceEE--ecC-----------CCH----HHHHHHHHcccEEEeCCCeEEecc-CChhh
Q 012238          390 KLFDSLSAKDKSGKDWSFILRQIGMFS--FTG-----------LNK----AQSDNMTNKWHVYMTKDGRISLAG-LSLAK  451 (467)
Q Consensus       390 ~l~~~l~~~~g~~~~~~~~~~~~g~f~--~~~-----------l~~----~~~~~ll~~~gI~v~~ggRis~~~-~~~~~  451 (467)
                      .|.+.+. +.+++.   .+...|.++-  |..           .+.    .++..+++ +||++.|.|++.+.. +++++
T Consensus       357 ~L~~l~~-~~~~~~---~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~Gv~~~p~~~~~~s~~~T~~d  431 (454)
T 4ao9_A          357 RLNALCA-NEGVAM---QFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLN-EDIYSSPRGFVVLSLPLTDAD  431 (454)
T ss_dssp             HHHHHHH-HHTBSC---EEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHH-TTEECCTTCEEECCTTCCHHH
T ss_pred             HHHHHHh-hCCCCE---EEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHH-CCEEEcCCCCEEEeCCCCHHH
Confidence            3333333 444322   1222333331  111           122    23556676 499999999665432 48899


Q ss_pred             HHHHHHHHHHHHHhc
Q 012238          452 CEYLADAIIDSYHNV  466 (467)
Q Consensus       452 i~~~~~~l~~~l~~~  466 (467)
                      |++++++|++++.++
T Consensus       432 Id~~l~al~~~l~~~  446 (454)
T 4ao9_A          432 IDRYVAAIGSFIGGH  446 (454)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999999764

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.68  E-value=8.9e-16  Score=162.31  Aligned_cols=171  Identities=12%  Similarity=0.085  Sum_probs=118.9

Q ss_pred             CCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeE
Q 012238          123 LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWS  202 (467)
Q Consensus       123 ~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~  202 (467)
                      .|..-+.++++.+|++++..       .-+++  ++|++.|+..+  +.+.+.|||+|+++.|+|..+...++..|++++
T Consensus       192 ~~~g~i~eaE~~lA~~fGa~-------~a~~v--~nGts~An~~a--i~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv  260 (715)
T 3n75_A          192 DHSGPHKEAEQYIARVFNAD-------RSYMV--TNGTSTANKIV--GMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPI  260 (715)
T ss_dssp             TTBTHHHHHHHHHHHHHTCS-------EEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEE
T ss_pred             CCcHHHHHHHHHHHHHhCCC-------CceEE--CcHHHHHHHHH--HHHhCCCCCEEEECCCccHHHHHHHHHcCCEEE
Confidence            35555789999999996542       24555  77778888776  566688999999999999999999999999999


Q ss_pred             EeeeecCCCCCC---------ChhhHHHHHHcCCC--CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccC
Q 012238          203 EYRYYDPKTVGL---------DFEGMIADIKAAPG--GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY  271 (467)
Q Consensus       203 ~v~~~~~~~~~~---------d~~~l~~~l~~~~~--~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay  271 (467)
                      +++... +.+++         |++.+++++++.+.  .++++++++| ||+|.+++.+++.   ++|+++  .+++||+|
T Consensus       261 ~v~~~~-~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~---ela~~~--~livDEAH  333 (715)
T 3n75_A          261 YFRPTR-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIK---KTLDVK--SIHFDSAW  333 (715)
T ss_dssp             EECCCB-CTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHH---HHCCCS--EEEEECTT
T ss_pred             EEeccc-cccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHH---HHhCcC--cEEEcccc
Confidence            998643 24443         89999999986431  1236777888 9999999877554   556655  37899998


Q ss_pred             CCCC-CCCCCCChhHHHHHHhcC---Ce-EEEEecCccCcccCCCcc-ceEE
Q 012238          272 QGFA-SGSLDNDASSVRLFATRG---ME-LLVAQSYSKNLGLYAERI-GAMN  317 (467)
Q Consensus       272 ~~~~-~~~~~~~~~~~~~~~~~~---~~-~i~~~S~SK~~~~~G~Ri-G~~~  317 (467)
                      .... ++..-.....    ...+   +. +++++|++|+++  |+.. |++.
T Consensus       334 ~~~~~f~~~~~~~~a----l~~g~~aD~vii~~~S~hKtL~--gltqgs~i~  379 (715)
T 3n75_A          334 VPYTNFSPIYEGKCG----MSGGRVEGKVIYETQSTHKLLA--AFSQASMIH  379 (715)
T ss_dssp             CTTGGGSGGGTTSST----TSSSCCTTCEEEEEECHHHHSS--CCTTCEEEE
T ss_pred             ccccccCCccccccc----cccCcCCCEEEEEEeccccccc--CCCCeeEEE
Confidence            7543 3310000000    1111   23 367999999964  5533 5553

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.54  E-value=9.9e-13  Score=129.23  Aligned_cols=327  Identities=16%  Similarity=0.162  Sum_probs=197.9

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC------CcchHHHHH---HHHHHHhCCCCcccccCceee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP------IEGLAAFNK---VTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~------~~G~~~lr~---aia~~l~~~~~~~~~~~~i~~  154 (467)
                      .-|+|=..++       ++++.|++++...+.+.+..+|+.      ..-++++..   .-|..+++..   . .+.-+=
T Consensus        55 ~~ieLIASEN-------~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~---~-A~w~VN  123 (490)
T 3ou5_A           55 RGLELIASEN-------FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLD---P-AQWGVN  123 (490)
T ss_dssp             HSEECCTTCC-------CCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCC---T-TTEEEE
T ss_pred             cCceEecCCC-------cCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCC---c-cccCCC
Confidence            5688876554       248999999999886655555532      222333333   2333334331   1 121123


Q ss_pred             eecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH--------HHhhCCC--CeEEeeeecCCCCCCChhhHHHHHH
Q 012238          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN--------IFNDARV--PWSEYRYYDPKTVGLDFEGMIADIK  224 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~--------~~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~l~  224 (467)
                      ||..+|+.|...+  +++++.|||+|+..+....++..        -+...|.  +.+.|+++ ++++.+|.|.+++...
T Consensus       124 VQP~SGs~AN~av--y~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd-~~t~~IDyd~~~~~A~  200 (490)
T 3ou5_A          124 VQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN-PKTGLIDYNQLALTAR  200 (490)
T ss_dssp             CCCSSHHHHHHHH--HHHHCC-CCCEECBC----------------------------CBCEE-TTTTEECHHHHHHHHH
T ss_pred             CCcCCHHHHHHHH--HHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccC-CCCCcccHHHHHHHHh
Confidence            5678999999888  77889999999999977665432        1122232  45556664 5577899999999988


Q ss_pred             cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCc
Q 012238          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (467)
Q Consensus       225 ~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S  303 (467)
                      +  .++++|+.....+|-=  ++   ++++.++|.+.|.++++|.++. ++..++.-.+  ++    +.  -.|+..|-.
T Consensus       201 ~--~kPklIi~G~SaY~r~--id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~ps--P~----~~--ADvVTtTTH  265 (490)
T 3ou5_A          201 L--FRPRLIIAGTSAYARL--ID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPS--PF----KH--ADIVTTTTH  265 (490)
T ss_dssp             H--HCCSEEEECCSSCCSC--CC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCC--GG----GT--CSEEEEESS
T ss_pred             h--cCCCeEEECCccCccc--cC---HHHHHHHHhhcccEEEechhhhhhhhcccccCC--cc----cc--ceEEecccc
Confidence            7  4566888777666653  33   5566777889999999999963 4443332111  22    11  247788999


Q ss_pred             cCcccCCCccceEEEecCCH--------------HHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhh
Q 012238          304 KNLGLYAERIGAMNVVCSSS--------------DLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL  369 (467)
Q Consensus       304 K~~~~~G~RiG~~~~v~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~  369 (467)
                      |+|  +|-|-|.|.  +...              ++.+.            +....-+...+.|.....++.++    .+
T Consensus       266 KTL--rGPrGG~Il--~~~~~~~~~~k~~~~~~~~~~kk------------in~aVFPg~qggp~~h~IAAkAV----af  325 (490)
T 3ou5_A          266 KTL--RGARSGLIF--YRKGVKAVDPKTGREIPYTFEDR------------INFAVFPSLQGGPHNHAIAAVAV----AL  325 (490)
T ss_dssp             STT--CSCSCEEEE--EECSEEEECC--CCEEECCCHHH------------HHHHHTTTTCSSCCHHHHHHHHH----HH
T ss_pred             ccc--cCCCceEEE--eccccccccccccchhHHHHHHH------------HHhhcCccccccchHHHHHHHHH----HH
Confidence            997  677878875  4331              33334            66555555444443333332222    23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceE-Eec-----CCCHHHHHHHHHcccEEEeC----C
Q 012238          370 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF-SFT-----GLNKAQSDNMTNKWHVYMTK----D  439 (467)
Q Consensus       370 ~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f-~~~-----~l~~~~~~~ll~~~gI~v~~----g  439 (467)
                      .+.+..+.....++..++.+.|.+.|. +.|    ++++....-.+ +++     +++...++++|++.||.+..    +
T Consensus       326 ~Ea~~p~fk~Ya~qVv~NAkaLA~~L~-~~G----~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~  400 (490)
T 3ou5_A          326 KQACTPMFREYSLQVLKNARAMADALL-ERG----YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPG  400 (490)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHHHH-HTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTT
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHHH-hCC----CeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCC
Confidence            333344566778888889999999999 888    46554333333 333     45788899999999998753    2


Q ss_pred             --------C-eEEec-----cCChhhHHHHHHHHHHHHH
Q 012238          440 --------G-RISLA-----GLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       440 --------g-Ris~~-----~~~~~~i~~~~~~l~~~l~  464 (467)
                              | ||...     ++.+++++++.+.|.+++.
T Consensus       401 D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~  439 (490)
T 3ou5_A          401 DRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             CCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence                    3 88733     3578999999999988764

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.49  E-value=7.2e-12  Score=123.72  Aligned_cols=178  Identities=11%  Similarity=0.000  Sum_probs=117.1

Q ss_pred             HHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCC----CCEEEEcCCCCcchHHHHhhCCCCeEEeee-ecC
Q 012238          135 TAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP----GAKVLISSPTWGNHKNIFNDARVPWSEYRY-YDP  209 (467)
Q Consensus       135 ia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~----gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~-~~~  209 (467)
                      +.+|+... |.+.. ...++  ++|+|+++..+  +++.+.+    ||+|+++..++......+...|+++++++. .++
T Consensus       122 ~ld~L~~~-G~~~~-~~~fl--VnGsTgg~lam--ilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~  195 (501)
T 3hl2_A          122 VLDIIKLA-GVHTV-ANCFV--VPMATGMSLTL--CFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEG  195 (501)
T ss_dssp             HHHHHHHT-TCTTC-CEEEE--ESSCHHHHHHH--HHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEET
T ss_pred             HHHHHHHc-CCCCC-CcEEE--ECcHHHHHHHH--HHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecc
Confidence            33454443 55422 23555  69999777765  5556653    499999999999999999999999999854 334


Q ss_pred             CCCCCChhhHHHHHHcCCCCcEEEEe-CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012238          210 KTVGLDFEGMIADIKAAPGGSFILLH-GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (467)
Q Consensus       210 ~~~~~d~~~l~~~l~~~~~~~~~i~i-~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~  288 (467)
                      +..++|++.+++++++.+...+++++ +.++|-.|.+   +++++|+++|++||+++++|+||......    ...-+..
T Consensus       196 ~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~---ddI~eIaeIch~~gIpllVDeAhGah~~~----~~~lp~s  268 (501)
T 3hl2_A          196 DELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVP---DRLEELAVICANYDIPHIVNNAYGVQSSK----CMHLIQQ  268 (501)
T ss_dssp             TEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTCTTCHH----HHHHHHH
T ss_pred             cccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCccc---ccHHHHHHHHHHcCCeEEEeCcchhhhhh----hhhhHHH
Confidence            46789999999999875434444443 3344433343   35678888899999999999998654310    0111122


Q ss_pred             HHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhh
Q 012238          289 FATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       289 ~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                      ....+.-.+++.|..|++-+| +. |+++ ...+++++++
T Consensus       269 A~~~GrAD~vVqS~HK~llvp-IG-G~ii-~~~d~e~l~~  305 (501)
T 3hl2_A          269 GARVGRIDAFVQSLDKNFMVP-VG-GAII-AGFNDSFIQE  305 (501)
T ss_dssp             HHHHSCCCEEEEEHHHHHCCC-SS-CEEE-EESCHHHHHH
T ss_pred             HHhcCCCcEEEecccccceee-cC-ceEE-EeCCHHHHHH
Confidence            233343456899999998655 21 3342 2467777766

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.43  E-value=2.1e-11  Score=123.29  Aligned_cols=342  Identities=13%  Similarity=0.051  Sum_probs=188.0

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.||+..|.--..-|.  -.|.|.+|+.+.+.....  ..+.+.....++-+.+++..-...     .+++++  +++
T Consensus        63 G~~ylD~~~g~~~~~lGh--~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-----~~~v~f--~~s  133 (456)
T 4atq_A           63 GNSFIDLGSGIAVTSVGA--SDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDH-----AKRTVL--FNS  133 (456)
T ss_dssp             SCEEEESSHHHHTCTTCT--TCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSS-----CEEEEE--ESS
T ss_pred             CCEEEEccccHHHHhcCC--CCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCC-----CcEEEE--eCC
Confidence            357899988754222233  367888888877654221  122344445566666666642211     346777  899


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-HhhCC-------------CCeEEeeeecC----CCCCCChhhHHH
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-FNDAR-------------VPWSEYRYYDP----KTVGLDFEGMIA  221 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~-~~~~G-------------~~~~~v~~~~~----~~~~~d~~~l~~  221 (467)
                      |++|.+.+.++........+|+...-+|.+.... +...+             ..+..+|....    .....+.+.+++
T Consensus       134 GsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  213 (456)
T 4atq_A          134 GAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKR  213 (456)
T ss_dssp             HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHH
Confidence            9999999966655555567999999999765332 22111             12333443111    111123333333


Q ss_pred             HHHc-----CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012238          222 DIKA-----APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (467)
Q Consensus       222 ~l~~-----~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~  295 (467)
                      .++.     .+.+...+++-.-+.-.|.+ ++++-+++|.++|++||+++|+||+..+|.-.+   ..+.. ....-.++
T Consensus       214 ~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG---~~~a~-e~~gv~PD  289 (456)
T 4atq_A          214 AITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTG---EWFAV-DHEGVVPD  289 (456)
T ss_dssp             HHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSGG-GGTTCCCS
T ss_pred             HHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCcc---ccccc-cccCCCCc
Confidence            3321     12355566666555556755 567789999999999999999999988764221   11111 11122234


Q ss_pred             EEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH
Q 012238          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA  375 (467)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  375 (467)
                      ++   .++|.+| .|+.+|.++   ..+++.+.            +.......+.+.+.++..++.+.|+-  +.+    
T Consensus       290 iv---t~gK~lg-gg~P~~av~---~~~~i~~~------------~~~~~~~~Tf~gnpla~aaala~L~~--i~~----  344 (456)
T 4atq_A          290 II---TMAKGIA-GGLPLSAIT---GRADLLDA------------VHPGGLGGTYGGNPVACAAALAAIDT--MEQ----  344 (456)
T ss_dssp             EE---EECGGGG-TTSSCEEEE---EEHHHHTT------------SCTTSSCCSSSSCHHHHHHHHHHHHH--HHH----
T ss_pred             hh---hhhhccc-CcCCceeeE---ecHHHHhc------------ccccCCCCCCCCChHHHHhhHHHHHH--Hhh----
Confidence            43   4579988 889999985   66777665            43332233445556666666655531  110    


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh---ccCCCC-C-cccccCCcceEEecCC--------C----HHHHHHHHHcccEEEeC
Q 012238          376 EMEMMAGRIKNVRQKLFDSLSA---KDKSGK-D-WSFILRQIGMFSFTGL--------N----KAQSDNMTNKWHVYMTK  438 (467)
Q Consensus       376 ~l~~~~~~~~~~r~~l~~~l~~---~~g~~~-~-~~~~~~~~g~f~~~~l--------~----~~~~~~ll~~~gI~v~~  438 (467)
                        +...++.++.-+++.+.|++   ++.... . +.-+...| +++-+.+        +    ..+...+++ +|+++.+
T Consensus       345 --~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~G-l~~giel~~~~~~~~~~~~~~~v~~~~~~-~Gvl~~~  420 (456)
T 4atq_A          345 --HDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRG-AMLAIELVQPGSKEPNAELTKAVAAACLK-EGVIILT  420 (456)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEET-TEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECEE
T ss_pred             --ccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecc-eEEEEEEecCCCCCcCHHHHHHHHHHHHH-CCCEEEe
Confidence              11223333333333333330   221100 0 11112223 3322211        1    234556665 5999876


Q ss_pred             CC------eEEec-cCChhhHHHHHHHHHHHHHh
Q 012238          439 DG------RISLA-GLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       439 gg------Ris~~-~~~~~~i~~~~~~l~~~l~~  465 (467)
                      +|      ||... .++++++++++++|.++++.
T Consensus       421 ~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a  454 (456)
T 4atq_A          421 CGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA  454 (456)
T ss_dssp             ECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            54      55432 24889999999999999875

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.40  E-value=3.7e-11  Score=120.02  Aligned_cols=160  Identities=12%  Similarity=-0.045  Sum_probs=105.7

Q ss_pred             cCCchhHHHHHHHHHHHhC----CCCEEEEcCCCCcchHHHHhhCCCCeEEeeee-cCCCCCCChhhHHHHHHcCC-CCc
Q 012238          157 GLSGTGSLRLAAALIERYF----PGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAP-GGS  230 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~~----~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~-~~~  230 (467)
                      ++|+|++..++  ++..+.    +++.|+++.-++......+...|+.++.++.. +++.+.+|++.+++++++.+ ..+
T Consensus       122 V~GaT~~~~a~--~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~  199 (450)
T 3bc8_A          122 VPMATGMSLTL--CFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHI  199 (450)
T ss_dssp             ESSCHHHHHHH--HHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGE
T ss_pred             ECCHHHHHHHH--HHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCE
Confidence            68888555554  344444    38999999999999999999999999988542 24467899999999998754 233


Q ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCC
Q 012238          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA  310 (467)
Q Consensus       231 ~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G  310 (467)
                      .+|+.+..+|.+|.+-   ++++|+++|++||+++++|+||......    ...-++...+...-..++.|..|++..+ 
T Consensus       200 ~~Vv~t~t~~g~g~~d---dl~~Ia~ia~~~gi~l~VD~A~G~~~~~----~~~l~~~a~~~~~AD~~v~S~HK~l~a~-  271 (450)
T 3bc8_A          200 LCLHSTTACFAPRVPD---RLEELAVICANYDIPHVVNNAYGLQSSK----CMHLIQQGARVGRIDAFVQSLDKNFMVP-  271 (450)
T ss_dssp             EEEEEESSCCTTBCCC---CHHHHHHHHHHHTCCEEEECTTTTTCHH----HHHHHHHHHHHSCCCEEEEEHHHHHSCC-
T ss_pred             EEEEEECCcCCCceec---CHHHHHHHHHHCCCeEEEECCCchhhhh----hHhHHHHHhcccCCCEEEECCccCCCch-
Confidence            4444443444455544   4668888899999999999998754310    0101111222222345789999998754 


Q ss_pred             CccceEEEecCCHHHHhh
Q 012238          311 ERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       311 ~RiG~~~~v~~~~~~~~~  328 (467)
                      .-.+++.  ..+++.++.
T Consensus       272 ~~~~~l~--~rd~~~~~~  287 (450)
T 3bc8_A          272 VGGAIIA--GFNEPFIQD  287 (450)
T ss_dssp             SSCEEEE--ESCHHHHHH
T ss_pred             hccEEEE--ecCHHHHHH
Confidence            2233332  357766665

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.37  E-value=8.1e-12  Score=135.23  Aligned_cols=339  Identities=9%  Similarity=0.063  Sum_probs=183.0

Q ss_pred             CcEEecCcccCCCCCCCCc-hHHHHHHHHHHHhcCCCCcCC--CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           84 KKLNLGVGAYRTEELQPYV-LDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~-~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +.||+..|..-..-|  +- .|.+.+|+.+.+..-....+.  ...-..+|-+.++++....     .-+++++  +++|
T Consensus       381 ~ylD~~sg~~~~~lG--h~~~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~-----~l~~vff--~~SG  451 (831)
T 4a0g_A          381 QQFDACASWWTQGPD--PTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKG-----WASRVYF--SDNG  451 (831)
T ss_dssp             EEEETTHHHHTCCCC--HHHHHHHHHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTT-----TCCEEEE--ESSH
T ss_pred             heeeecccHhhcCCC--CCCCHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHhCCCC-----CCCEEEE--CCCh
Confidence            467777774422222  33 678888888776441111110  1111223444444442110     0257888  9999


Q ss_pred             hhHHHHHHHHH-HHh--CCC------------CEEEEcCCCCcch-HHHHhhCCCCe-----------------------
Q 012238          161 TGSLRLAAALI-ERY--FPG------------AKVLISSPTWGNH-KNIFNDARVPW-----------------------  201 (467)
Q Consensus       161 t~al~l~~~~l-~~~--~~g------------d~Vlv~~P~y~~~-~~~~~~~G~~~-----------------------  201 (467)
                      ++|.+.+.++. ..+  ..|            .+|+...-+|..- ...+...|...                       
T Consensus       452 SeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~  531 (831)
T 4a0g_A          452 STAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVF  531 (831)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEE
T ss_pred             hHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCcccc
Confidence            99999986654 212  122            2788888888543 33333333210                       


Q ss_pred             -----EEeeeecCCCCC---------CC------------------hhhHHHHHHc-----CCCCcEEEEeCCC-CCCCC
Q 012238          202 -----SEYRYYDPKTVG---------LD------------------FEGMIADIKA-----APGGSFILLHGCA-HNPTG  243 (467)
Q Consensus       202 -----~~v~~~~~~~~~---------~d------------------~~~l~~~l~~-----~~~~~~~i~i~~p-~NPTG  243 (467)
                           ..++.  +..+.         -|                  .+.+++.+++     .+.+..++++-.- ++..|
T Consensus       532 ~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG  609 (831)
T 4a0g_A          532 LSNGSWNISL--PESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGG  609 (831)
T ss_dssp             EETTEEEEEC--CTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTT
T ss_pred             ccCCceEecC--CccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCC
Confidence                 01111  10000         01                  1456666652     2345566666553 78888


Q ss_pred             CCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCC-CccceEEEecC
Q 012238          244 IDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCS  321 (467)
Q Consensus       244 ~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~  321 (467)
                      ... +++.+++|.++|++||+++|+||++.+|...+.   .+.. ....-.++++   +++|.++ .| +++|+++   .
T Consensus       610 ~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~---~fa~-e~~gv~PDii---tlsK~L~-gG~~Plgav~---~  678 (831)
T 4a0g_A          610 MHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV---ETTT-ELLGCKPDIA---CFAKLLT-GGMVPLAVTL---A  678 (831)
T ss_dssp             SEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSB---SSTH-HHHSSCCSEE---EECGGGG-TTSSCCEEEE---E
T ss_pred             CccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCC---chhh-HhcCCCCcEE---EEecccc-cCccCcEEEE---E
Confidence            765 788899999999999999999999998854321   1122 1222233433   6899998 57 8999995   7


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhh------ccCccCCCchHHHHHHHHHhC---ChhhHHHHHHHHHHHHHHHHH-HHHHH
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRL------ARPMYSNPPVHGARIVANVVG---NPALFDEWKAEMEMMAGRIKN-VRQKL  391 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~L~---~~~~~~~~~~~l~~~~~~~~~-~r~~l  391 (467)
                      ++++++.            +...      ....+.+.+.+++.++...|+   ++.+.    +.+.+..+++++ .++.+
T Consensus       679 ~~~i~~~------------~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~----~~~~~~~~~l~~~l~~~l  742 (831)
T 4a0g_A          679 TDAVFDS------------FSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETN----HNITSQGKTLRELWDEEL  742 (831)
T ss_dssp             CHHHHHT------------TCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTC----TTBCTTSSBBCCCSCHHH
T ss_pred             CHHHHHH------------HhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHH
Confidence            7887776            4321      112233455666666655543   11110    111111111111 01234


Q ss_pred             HHHhhhccCCCCCcccccCCcceEEecCC--C-----------HHHHHHHHHcccEEEeCCC---eEEe-ccCChhhHHH
Q 012238          392 FDSLSAKDKSGKDWSFILRQIGMFSFTGL--N-----------KAQSDNMTNKWHVYMTKDG---RISL-AGLSLAKCEY  454 (467)
Q Consensus       392 ~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~-----------~~~~~~ll~~~gI~v~~gg---Ris~-~~~~~~~i~~  454 (467)
                      .+.+. +.+.   +..+...|. ++.+.+  +           .++.+.+++ +||++.|.|   ||+. ...+++++++
T Consensus       743 ~~~l~-~~~~---v~~vrg~Gl-~~~iel~~~~~~~~~~~~~a~~~~~~l~e-~Gv~v~p~g~~lrl~pp~~~t~e~id~  816 (831)
T 4a0g_A          743 VQQIS-SHSA---VQRVVVIGT-LFALELKADASNSGYASLYAKSLLIMLRE-DGIFTRPLGNVIYLMCGPCTSPEICRR  816 (831)
T ss_dssp             HHHHH-HSTT---EEEEEEETT-EEEEEEC---------CHHHHHHHHHHHH-TTEECCCBTTEEEEECCTTCCHHHHHH
T ss_pred             HHHHh-hCCC---ceeEeeccc-EEEEEEecCccccccchHHHHHHHHHHHH-CCcEEEecCCEEEEECCCCCCHHHHHH
Confidence            44444 4332   223333443 332222  1           123445554 699999987   6662 2348899999


Q ss_pred             HHHHHHHHHHhc
Q 012238          455 LADAIIDSYHNV  466 (467)
Q Consensus       455 ~~~~l~~~l~~~  466 (467)
                      ++++|.++++++
T Consensus       817 ~~~~l~~~l~~l  828 (831)
T 4a0g_A          817 LLTKLYKRLGEF  828 (831)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.34  E-value=4e-10  Score=114.43  Aligned_cols=345  Identities=12%  Similarity=0.073  Sum_probs=187.5

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-CCcCC--CCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      +.+.||+..|.-...-|.  -.|.|.+++.+.++... ...+.  +..-..+|-+.+++..-.      +-++|.+  ++
T Consensus        66 G~~ylD~~~g~~~~~lGh--~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~------~~~~v~f--~~  135 (473)
T 4e3q_A           66 GRRYLDANSGLWNMVAGF--DHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPF------DSGRVFY--TN  135 (473)
T ss_dssp             CCEEEETTTTTTTCTTCS--CCHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSC------SSCEEEE--ES
T ss_pred             CCEEEEcccCHHHhhccC--CCHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCC------CccEEEE--eC
Confidence            357899988765222233  36788888888775421 11111  111122344444444211      1358888  99


Q ss_pred             CchhHHHHHHHHHHHh-----CCC-CEEEEcCCCCcchHH-HHhhCCC-----------CeEEeeeec----CCCCCC--
Q 012238          159 SGTGSLRLAAALIERY-----FPG-AKVLISSPTWGNHKN-IFNDARV-----------PWSEYRYYD----PKTVGL--  214 (467)
Q Consensus       159 ggt~al~l~~~~l~~~-----~~g-d~Vlv~~P~y~~~~~-~~~~~G~-----------~~~~v~~~~----~~~~~~--  214 (467)
                      +|++|.+.+.++...+     .++ .+|+...-+|..... .+...|-           ....++...    ......  
T Consensus       136 sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  215 (473)
T 4e3q_A          136 SGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEE  215 (473)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHH
T ss_pred             chHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhh
Confidence            9999999986554332     133 478888888865432 2222221           122222100    000001  


Q ss_pred             -----ChhhHHHHHHcC-CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012238          215 -----DFEGMIADIKAA-PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR  287 (467)
Q Consensus       215 -----d~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~  287 (467)
                           ..+++++.+.+. ++....+++...+.-.|.+ ++++-+++|.++|++||+++|.||+..+|.-.+   ..+.. 
T Consensus       216 ~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG---~~fa~-  291 (473)
T 4e3q_A          216 QFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG---NTWGC-  291 (473)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTS---SSCHH-
T ss_pred             HHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCccc---chhHH-
Confidence                 123445555432 2445566666656666765 456789999999999999999999988884221   12222 


Q ss_pred             HHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh---ccCccCCCchHHHHHHHHH
Q 012238          288 LFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL---ARPMYSNPPVHGARIVANV  363 (467)
Q Consensus       288 ~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~  363 (467)
                      ....-.++++   .++|.++ .| +.+|.++   ..+++.+.        +.......   ....+.+.++++..++.+.
T Consensus       292 e~~gv~PDi~---t~~K~l~-gG~~Pl~av~---~~~~i~~~--------~~~~~~~~~~~~hg~T~~Gnpla~Aaala~  356 (473)
T 4e3q_A          292 VTYDFTPDAI---ISSKNLT-AGFFPMGAVI---LGPELSKR--------LETAIEAIEEFPHGFTASGHPVGCAIALKA  356 (473)
T ss_dssp             HHTTCCCSEE---EECGGGG-TTSSCCEEEE---ECHHHHHH--------HHHHHHHHSCCCCCCTTTTCHHHHHHHHHH
T ss_pred             HhcCCCCChH---Hhccccc-CCCCCccccc---ccHHHHHH--------hccccccccccccCCCCCCCcchhhhhhhh
Confidence            1222334544   3579998 55 8899985   77888776        43322221   1222334555666666555


Q ss_pred             hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-CCCcccccCCcceEEe--c-C------C------CHHHHHH
Q 012238          364 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS-GKDWSFILRQIGMFSF--T-G------L------NKAQSDN  427 (467)
Q Consensus       364 L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~-~~~~~~~~~~~g~f~~--~-~------l------~~~~~~~  427 (467)
                      |+-  +    ++  +...++.++.-++|.+.|+ ++.- |. +..+...|-++-+  + +      .      ...+...
T Consensus       357 L~~--i----~~--~~l~~~~~~~g~~l~~~L~-~l~~~~~-v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~  426 (473)
T 4e3q_A          357 IDV--V----MN--EGLAENVRRLAPRFEERLK-HIAERPN-IGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANT  426 (473)
T ss_dssp             HHH--H----HH--SSHHHHHHHHHHHHHHHHH-HHTTSTT-EEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHH
T ss_pred             hhh--h----cc--ccHHHHHHHHHHHHHHHHH-HHhcCCC-eeEEeecceEEEEEEecCccccccccccHHHHHHHHHH
Confidence            431  1    10  1233444445555555555 4321 11 2112222322211  1 0      1      1233455


Q ss_pred             HHHcccEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          428 MTNKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       428 ll~~~gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +++ +|+++.+.|   ||+-. .++++++++++++|.++++++
T Consensus       427 ~~~-~Gll~~~~g~~i~l~PPL~it~~eid~~~~~l~~al~~v  468 (473)
T 4e3q_A          427 CTD-LGLICRPLGQSVVLCPPFILTEAQMDEMFDKLEKALDKV  468 (473)
T ss_dssp             HHH-TTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-CCcEEEecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            555 699999987   54422 248899999999999888764

>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A*

Probab=81.72  E-value=8.9  Score=38.70  Aligned_cols=71  Identities=11%  Similarity=0.039  Sum_probs=48.1

Q ss_pred             hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEE
Q 012238          190 HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF  267 (467)
Q Consensus       190 ~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~  267 (467)
                      +.+.+..++.++..+.+.|+.+|.+..+...+.-... ..+      ....+.|-.|+.+|+++|++.|+++|+-||-
T Consensus       204 ~id~mA~~KlN~lH~HltDdqgwriei~~~P~Lt~~G-a~~------~~~~~~~g~YT~~di~eIv~YA~~rgI~VIP  274 (525)
T 3gh5_A          204 QIDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEIG-SKG------QVGGGPGGYYTQEQFKDIVSYAAERYIEVIP  274 (525)
T ss_dssp             HHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTT-TSC------CTTSSCCCCBCHHHHHHHHHHHHTTTCEEEE
T ss_pred             HHHHHHHcCCcEEEEEeccCCccccccccchhhhhcc-Ccc------ccCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence            3445567788888888776667777766665544321 110      0112346789999999999999999998883

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	467
d1ajsa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig	1e-105
d7aata_	401	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi	1e-101
d3tata_	397	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	6e-98
d1yaaa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak	3e-97
d2q7wa1	396	c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT	4e-96
d2ay1a_	394	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	2e-95
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	7e-14
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	1e-12
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	1e-12
d1xi9a_	395	c.67.1.1 (A:) Putative alanine aminotransferase {P	1e-06
d1o4sa_	375	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	2e-04

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

 Score =  316 bits (811), Expect = e-105
 Identities = 182/412 (44%), Positives = 249/412 (60%), Gaps = 16/412 (3%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE- 115
           S F  V  A P  +  +   F+ D D +K+NLGVGAYRT++ QP+VL VV+K E  +   
Sbjct: 4   SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN 63

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              N EYLPI GLA F    + L  G D+  L+E+RV  VQ L GTG+LR+ A  + R++
Sbjct: 64  SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 123

Query: 176 -----PGAKVLISSPTWGNHKNIFNDA-RVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
                    V +SSPTW NH  +F  A       YRY+D +  GLD +G ++D++ AP  
Sbjct: 124 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 183

Query: 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289
           S  +LH CAHNPTG DPTPEQW++IA V++ +   PFFD AYQGFASG+L+ DA ++R F
Sbjct: 184 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243

Query: 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMY 349
            + G EL  AQS+SKN GLY ER+G + VV    D   R          SQ++++ R  +
Sbjct: 244 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRV--------LSQMQKIVRVTW 295

Query: 350 SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL 409
           SNPP  GARIVA  + +P LF EW   ++ MA RI ++R +L   L A    G  W+ I 
Sbjct: 296 SNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPG-TWNHIT 354

Query: 410 RQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 461
            QIGMFSFTGLN  Q + + N+ H+Y+   GRI++ GL+    +Y+A +I +
Sbjct: 355 DQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSIHE 406

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

 Score =  307 bits (786), Expect = e-101
 Identities = 199/404 (49%), Positives = 273/404 (67%), Gaps = 10/404 (2%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL+ V+KAE ++  +
Sbjct: 2   SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK 61

Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF- 175
             +KEYLPI GLA F + +AEL  G ++   K  R  TVQG+SGTGSLR+ A  ++R+F 
Sbjct: 62  KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFK 121

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               V +  P+WGNH  IF DA +    YRYYDPKT  LDF G + DI   P  S ILLH
Sbjct: 122 FSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLH 181

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DP  EQW+++A V++++N + +FD+AYQGFASG ++ DA ++R F  +G++
Sbjct: 182 ACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVH 355
           ++++QSY+KN+GLY ER GA  V+C               +V+SQLK L RPMYSNPP++
Sbjct: 242 VVLSQSYAKNMGLYGERAGAFTVIC--------RDAEEAKRVESQLKILIRPMYSNPPMN 293

Query: 356 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 415
           GARI + ++  P L  EW  E++ MA RI ++R +L  +L  +  S  +W  I  QIGMF
Sbjct: 294 GARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKE-GSSHNWQHITDQIGMF 352

Query: 416 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
            FTGL   Q + +T ++ +YMTKDGRIS+AG++ +   YLA AI
Sbjct: 353 CFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAI 396

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

 Score =  298 bits (762), Expect = 6e-98
 Identities = 164/402 (40%), Positives = 239/402 (59%), Gaps = 11/402 (2%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAE-NLMLERG 117
           F+ V     DPIL + E FK D    K+NL +G Y  E+     L  V +AE  L  +  
Sbjct: 2   FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPH 61

Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
               YLP+EGL  +    A LLFGAD+ VLK+QRVAT+Q L G+G+L++ A  ++RYFP 
Sbjct: 62  GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE 121

Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
           + V +S PTW NH  IF  A    S Y +YD  T G+ F  ++A +K  P  S +LLH C
Sbjct: 122 SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPC 181

Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
            HNPTG D T +QW+ + ++++ +  IPF D+AYQGF +G ++ DA ++R  A+ G+  L
Sbjct: 182 CHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPAL 240

Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGA 357
           V+ S+SK   LY ER+G ++V+C  ++ A R           QLK   R  YS+PP  GA
Sbjct: 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRV--------LGQLKATVRRNYSSPPNFGA 292

Query: 358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF 417
           ++VA V+ + AL   W AE+E M  RI  +RQ+L   LS +    +++ ++L Q GMFS+
Sbjct: 293 QVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTE-MPERNFDYLLNQRGMFSY 351

Query: 418 TGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 459
           TGL+ AQ D +  ++ VY+   GR+ +AGL+ A  + +A A 
Sbjct: 352 TGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAF 393

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

 Score =  296 bits (758), Expect = 3e-97
 Identities = 164/409 (40%), Positives = 233/409 (56%), Gaps = 9/409 (2%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-E 115
           + F  + + PPD + G+ + +  D    K++LG+GAYR +  +P+VL  VK AE L+  +
Sbjct: 3   TLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHND 62

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              N EYL I GL +     A+++FG  +  L+E RV +VQ LSGTG+L ++A    ++F
Sbjct: 63  SSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFF 122

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
           P   V +S PTW NH  IF +  +  + Y Y+  +T  LD  G +  I+ AP GS  +LH
Sbjct: 123 PDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLH 182

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM- 294
            CAHNPTG+DPT EQW +I D I  KNHI  FD AYQGFA+G LD DA +VRL   +   
Sbjct: 183 SCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST 242

Query: 295 --ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNP 352
              + V QS++KN G+Y ER+G  ++  +         +     V SQL ++ R   SNP
Sbjct: 243 VSPVFVCQSFAKNAGMYGERVGCFHLALTK----QAQNKTIKPAVTSQLAKIIRSEVSNP 298

Query: 353 PVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQI 412
           P +GA+IVA ++  P L ++W  +M  M+ RI  +R  L D L      G +W  I+ Q 
Sbjct: 299 PAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPG-NWDHIVNQC 357

Query: 413 GMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 461
           GMFSFTGL       +     VY+   GR S+AGL+    EY+A AI +
Sbjct: 358 GMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDE 406

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

 Score =  293 bits (750), Expect = 4e-96
 Identities = 175/403 (43%), Positives = 247/403 (61%), Gaps = 10/403 (2%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61

Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121

Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181

Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240

Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A SYSKN GLY ER+GA  +V + S+   R          SQ+K   R  YSNPP HGA 
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRA--------FSQMKAAIRANYSNPPAHGAS 292

Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           +VA ++ N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+
Sbjct: 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEK-GANRDFSFIIKQNGMFSFS 351

Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 461
           GL K Q   +  ++ VY    GR+++AG++      L +AI+ 
Sbjct: 352 GLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVA 394

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

 Score =  291 bits (745), Expect = 2e-95
 Identities = 148/403 (36%), Positives = 212/403 (52%), Gaps = 13/403 (3%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
              +    PD IL +   F+AD  + K++LGVG Y+       ++  V  AE  MLE   
Sbjct: 2   LGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET 61

Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K Y  + G   F K   EL+ G      K +  AT+  + GTG+LR A  L     P  
Sbjct: 62  TKTYAGLSGEPEFQKAMGELILGDGL---KSETTATLATVGGTGALRQALELARMANPDL 118

Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S PTW NH +I N   +P   YRY+D +T G+DFEGM AD+ AA  G  +LLHGC 
Sbjct: 119 RVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCC 178

Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTG + T +QW +IA ++++   +P  D+AYQGF    L+ DA+  RL A+R  E+L+
Sbjct: 179 HNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGD-GLEEDAAGTRLIASRIPEVLI 237

Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358
           A S SKN G+Y ER G +  +C+ +                 +  L R  YS PP HGA+
Sbjct: 238 AASCSKNFGIYRERTGCLLALCADAATRELAQ--------GAMAFLNRQTYSFPPFHGAK 289

Query: 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT 418
           IV+ V+  P L  +W AE+E +   +  +R++L   L     S   + F+    GMFS  
Sbjct: 290 IVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSD-RFGFVAEHRGMFSRL 348

Query: 419 GLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 461
           G    Q   +  ++ +YM  D RI++AGL+      LA AII+
Sbjct: 349 GATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIE 391

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 70.6 bits (172), Expect = 7e-14
 Identities = 50/267 (18%), Positives = 94/267 (35%), Gaps = 20/267 (7%)

Query: 66  PPDPILGVSEAFKADTDEKKLNLGVG--AYRTEELQPYVLDVVKKAENLMLERGENKEYL 123
               I  + +   A   +  ++LG+G   + T     ++ +  K+A    L++G    Y 
Sbjct: 10  SASEIRKLFD--IAAGMKDVISLGIGEPDFDTP---QHIKEYAKEA----LDKGLTH-YG 59

Query: 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLIS 183
           P  GL    +  AE L   +      +    V   +    L   +A ++    G +VLI 
Sbjct: 60  PNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLK---DGEEVLIP 116

Query: 184 SPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG 243
           +P + ++      A     E   Y+     L+ + +   +         L+     NPTG
Sbjct: 117 TPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTR---ALIINSPCNPTG 173

Query: 244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS 303
              T +  E+IAD + E + I   D  Y+ F     D    S+          +    +S
Sbjct: 174 AVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYD--DARHYSIASLDGMFERTITVNGFS 231

Query: 304 KNLGLYAERIGAMNVVCSSSDLAARCC 330
           K   +   R+G +       +   +  
Sbjct: 232 KTFAMTGWRLGFVAAPSWIIERMVKFQ 258

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score = 66.7 bits (162), Expect = 1e-12
 Identities = 51/256 (19%), Positives = 88/256 (34%), Gaps = 22/256 (8%)

Query: 66  PPDPILGVSEAFKADTDEKK--LNLGVGA--YRTEELQPYVLDVVKKAENLMLERGENKE 121
            P   L +    KA   E     +   G   + T     ++++  K A    LE+G+ + 
Sbjct: 11  SPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTP---KHIVEAAKAA----LEQGKTR- 62

Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL 181
           Y P  G     +  A+ L   +        +    G   +    L  A+IE   PG +V+
Sbjct: 63  YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFN-LMLAMIE---PGDEVI 118

Query: 182 ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241
           I +P W ++  +   A                +  E +   I        +L+     NP
Sbjct: 119 IPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTK---LLVFNTPSNP 175

Query: 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA-Q 300
           TG+  TP++   IA V  E       D  Y+       D    S+   +    E  V   
Sbjct: 176 TGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYD--DAQHLSIGAASPEAYERSVVCS 233

Query: 301 SYSKNLGLYAERIGAM 316
            ++K   +   R+G +
Sbjct: 234 GFAKTYAMTGWRVGFL 249

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score = 66.7 bits (162), Expect = 1e-12
 Identities = 48/255 (18%), Positives = 81/255 (31%), Gaps = 24/255 (9%)

Query: 66  PPDPILGVSEAFKADTDEKK--LNLGVG--AYRTEELQPYVLDVVKKAENLMLERGENKE 121
            P   + V+        +    + L  G   + T     +V +  ++A    L +G+ K 
Sbjct: 12  KPSATVAVNAKALELRRQGVDLVALTAGEPDFDTP---EHVKEAARRA----LAQGKTK- 63

Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL 181
           Y P  G+    +  AE     +   +  +      G S        A L     PG +V+
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL----DPGDEVI 119

Query: 182 ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241
           + SP W ++  +   A     E      +    D E +   I         L+    +NP
Sbjct: 120 VLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTK---ALVVNSPNNP 176

Query: 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS 301
           TG     E  E +A +  E +     D  Y+           S  R+        L    
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYE--GEHFSPGRVAPEH---TLTVNG 231

Query: 302 YSKNLGLYAERIGAM 316
            +K   +   RIG  
Sbjct: 232 AAKAFAMTGWRIGYA 246

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 48.4 bits (114), Expect = 1e-06
 Identities = 59/334 (17%), Positives = 104/334 (31%), Gaps = 38/334 (11%)

Query: 86  LNLGVGAYRTEELQP--YVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD 143
           + L +G     + QP  ++ +   KA    ++ G N  Y   EGL    K   E      
Sbjct: 33  IRLNIGDPVKFDFQPPEHMKEAYCKA----IKEGHNY-YGDSEGLPELRKAIVER-EKRK 86

Query: 144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSE 203
           N V        V          +  A      PG ++L+  P++  +  +         E
Sbjct: 87  NGVDITPDDVRVTAAVTEALQLIFGA---LLDPGDEILVPGPSYPPYTGLVKFYGGKPVE 143

Query: 204 YRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNH 263
           YR  + +    D + +   I         +     +NPTG     +  E+I ++  E   
Sbjct: 144 YRTIEEEDWQPDIDDIRKKITDRT---KAIAVINPNNPTGALYDKKTLEEILNIAGEYEI 200

Query: 264 IPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS 323
               D  Y             S+    T+ + ++V    SK       R+G M  V   +
Sbjct: 201 PVISDEIYDLMTYEGEHISPGSL----TKDVPVIVMNGLSKVYFATGWRLGYMYFVDPEN 256

Query: 324 DLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR 383
            L+         +V+  + RLAR +   P               A        ++    +
Sbjct: 257 KLS---------EVREAIDRLAR-IRLCPNTPAQFAAI------AGLTGPMDYLKEYMKK 300

Query: 384 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF 417
           +K  R  ++  L          S    Q   + F
Sbjct: 301 LKERRDYIYKRL----NEIPGISTTKPQGAFYIF 330

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 45/260 (17%), Positives = 86/260 (33%), Gaps = 24/260 (9%)

Query: 66  PPDPILGVSEAFKADTDEKK--LNLGVG--AYRTEELQPYVLDVVKKAENLMLERGENKE 121
           P    + +    KA   + +  +NL  G   + T      V++   +     L++GE K 
Sbjct: 9   PISKTMELDAKAKALIKKGEDVINLTAGEPDFPTP---EPVVEEAVRF----LQKGEVK- 60

Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAA-ALIERYFPGAKV 180
           Y    G+    +         +           V       +L  A  AL++   PG +V
Sbjct: 61  YTDPRGIYELRE--GIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLD---PGDEV 115

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
           ++ SP W ++      A    +    +  K      E +        G +  +L    +N
Sbjct: 116 IVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEV---EGLLVGKTKAVLINSPNN 172

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTG+    E  E +  + +++N     D  Y              V     R   ++   
Sbjct: 173 PTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDR---IVYIN 229

Query: 301 SYSKNLGLYAERIGAMNVVC 320
            +SK+  +   R+G +    
Sbjct: 230 GFSKSHSMTGWRVGYLISSE 249

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	467
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	100.0
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	100.0
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	100.0
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	100.0
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	100.0
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	100.0
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	100.0
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	100.0
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	100.0
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	100.0
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	100.0
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	100.0
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	100.0
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	100.0
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	100.0
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	100.0
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	100.0
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	100.0
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	100.0
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	100.0
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	100.0
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	100.0
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	100.0
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	100.0
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	100.0
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.94
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.92
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.91
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.87
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.87
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.87
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.85
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.84
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.83
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.83
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.81
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.8
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.78
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.77
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.74
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.73
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.71
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.71
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.7
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.7
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.7
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.7
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.69
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.68
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.68
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.67
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.67
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.66
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.65
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.65
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.65
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.63
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.63
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.63
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.61
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.6
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.58
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.57
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.56
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.53
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.52
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.52
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.52
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.51
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.51
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.51
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.5
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.46
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.44
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.44
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.43
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.4
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.39
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.28
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.27
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.12
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.1
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	98.43
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.24

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=100.00  E-value=2.2e-63  Score=498.94  Aligned_cols=399  Identities=49%  Similarity=0.874  Sum_probs=347.4

Q ss_pred             ccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHH
Q 012238           57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA  136 (467)
Q Consensus        57 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia  136 (467)
                      |+|+.+++.|+|+|+++++.+++++++++|||++|.|+|+++.+++++.|++++.+++..+..++|.|..|+++||++++
T Consensus         2 ~~~~~~~~~p~d~i~~~~~~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia   81 (401)
T d7aata_           2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASA   81 (401)
T ss_dssp             CSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHH
T ss_pred             CccccCCCCCCChHHHHHHHHhCCCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHH
Confidence            78999999999999999999999999999999999999999988888999999999887766678999999999999999


Q ss_pred             HHHhCCCCcccccCceeeeecCCchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCC
Q 012238          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (467)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~-~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  215 (467)
                      +++.+.++..+.+++|+++++.++++++..+..++. .+.|||+|++++|+|+.|..+++.+|++++.+|+.+++++.+|
T Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~  161 (401)
T d7aata_          82 ELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLD  161 (401)
T ss_dssp             HHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEEC
T ss_pred             HHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcCCeEEEEecccccccccc
Confidence            999999998898999988666777777665543443 4669999999999999999999999999999999888888899


Q ss_pred             hhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012238          216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (467)
Q Consensus       216 ~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~  295 (467)
                      ++.+.+.+....++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++..........+....++
T Consensus       162 ~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~  241 (401)
T d7aata_         162 FTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID  241 (401)
T ss_dssp             HHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcc
Confidence            99999998876678999999999999999999999999999999999999999999999987422222223334456678


Q ss_pred             EEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH
Q 012238          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA  375 (467)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  375 (467)
                      ++++.|+||.++++|||+||++   ++.+.++.     ..++...+....+..+.+++.+.|.++..++.++.+..+|.+
T Consensus       242 ~~~~~s~sk~~~~~G~RiG~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  313 (401)
T d7aata_         242 VVLSQSYAKNMGLYGERAGAFT---VICRDAEE-----AKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLV  313 (401)
T ss_dssp             CEEEEECTTTSCCGGGCEEEEE---EECSSHHH-----HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             cceeEeccccceeeccccceee---cchHHHHH-----HHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHH
Confidence            9999999999999999999997   33333332     011333344445556778999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHHHH
Q 012238          376 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYL  455 (467)
Q Consensus       376 ~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~~~  455 (467)
                      +++.++++|+++|+.+.+.|+ +++.++.|.++++++|||+|++++.+++++|++++||++.||+||||+++++++++++
T Consensus       314 ~~~~~~~~~~~~r~~l~~~L~-~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~L~~e~gV~~~pg~Ris~a~~~~~~i~~l  392 (401)
T d7aata_         314 EVKGMADRIISMRTQLVSNLK-KEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYL  392 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HTTCCSCCHHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhCCCCCcceECCCCeEEEecCCCHHHHHHHHHhCCEEECCCcEEEeccCCHHHHHHH
Confidence            999999999999999999999 8887777888999999999999999999999999999999999999999899999999


Q ss_pred             HHHHHHHHH
Q 012238          456 ADAIIDSYH  464 (467)
Q Consensus       456 ~~~l~~~l~  464 (467)
                      +++|.++++
T Consensus       393 a~ai~~v~k  401 (401)
T d7aata_         393 AHAIHQVTK  401 (401)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999999874

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=100.00  E-value=2.4e-61  Score=485.57  Aligned_cols=406  Identities=41%  Similarity=0.731  Sum_probs=348.1

Q ss_pred             cccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHh-cCCCCcCCCCcchHHHHHH
Q 012238           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE-RGENKEYLPIEGLAAFNKV  134 (467)
Q Consensus        56 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~-~~~~~~Y~~~~G~~~lr~a  134 (467)
                      .|.|++++..|+|+|+++++++++++++++|||++|.|+|+++.+++++.|+++.+.+.. ....++|.|..|.++||++
T Consensus         2 ~~~~~~~~~~~~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~a   81 (412)
T d1yaaa_           2 ATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSN   81 (412)
T ss_dssp             TTTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHH
T ss_pred             cChhhcCCcCCCChHHHHHHHHhcCCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHH
Confidence            378999999999999999999999999999999999999999998888999999877653 3445789999999999999


Q ss_pred             HHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCC
Q 012238          135 TAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL  214 (467)
Q Consensus       135 ia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  214 (467)
                      +++++.+.++..+.++.++++++.|+.+++.+++.+...+.|||.|++++|+|+.|...++..|++++.+|+.++.++.+
T Consensus        82 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~  161 (412)
T d1yaaa_          82 AAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSL  161 (412)
T ss_dssp             HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEE
T ss_pred             HHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHcCCceecccccccccccc
Confidence            99999999888888888888777788888777755566677999999999999999999999999999999987888889


Q ss_pred             ChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH---Hh
Q 012238          215 DFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF---AT  291 (467)
Q Consensus       215 d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~---~~  291 (467)
                      |.+.+++.+...+++++++++++||||||.+++.+++++|+++|++++++||+||+|+++.+++..........+   ..
T Consensus       162 ~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~  241 (412)
T d1yaaa_         162 DLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLS  241 (412)
T ss_dssp             CHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTT
T ss_pred             cchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccc
Confidence            999999999877778899999999999999999999999999999999999999999999987421111111111   23


Q ss_pred             cCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHH
Q 012238          292 RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFD  371 (467)
Q Consensus       292 ~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~  371 (467)
                      ..++++++.|+||.++++|||+||++   .+.+.++.. .-....+..++....+.++.+++.++|.++..++.++.+.+
T Consensus       242 ~~~~~i~~~s~SK~~~~~G~RiG~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~  317 (412)
T d1yaaa_         242 TVSPVFVCQSFAKNAGMYGERVGCFH---LALTKQAQN-KTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTE  317 (412)
T ss_dssp             TTCCEEEEEECTTTSCCGGGCEEEEE---EECCSCTTH-HHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHH
T ss_pred             cCCCeEEEEecCCccccCcCceEEEE---EchhhhhhH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHH
Confidence            45789999999999999999999997   332222110 00000023334445566788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhh
Q 012238          372 EWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAK  451 (467)
Q Consensus       372 ~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~  451 (467)
                      +|.++++.++++++++|+.+.+.|+ ++|.++.|.++.+++|||+|++++.+++++|++++||++.||+|||++++++++
T Consensus       318 ~~~~~~~~~~~~~~~~r~~l~~~L~-~~g~~~~~~~~~~~gG~F~~~~ls~e~~~~L~~e~~V~~~~g~Ris~~g~~~~~  396 (412)
T d1yaaa_         318 QWHKDMVTMSSRITKMRHALRDHLV-KLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGN  396 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-HHTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCCceeCCCceEEEecCcCHHHHHHHHHhCCEEECCCCEEEeccCCHHH
Confidence            9999999999999999999999999 988888899999999999999999999999999999999999999999889999


Q ss_pred             HHHHHHHHHHHHHhc
Q 012238          452 CEYLADAIIDSYHNV  466 (467)
Q Consensus       452 i~~~~~~l~~~l~~~  466 (467)
                      ++++.++|.++++.+
T Consensus       397 i~~l~~ai~~v~k~~  411 (412)
T d1yaaa_         397 VEYVAKAIDEVVRFY  411 (412)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999999865

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=100.00  E-value=2.9e-61  Score=485.26  Aligned_cols=403  Identities=45%  Similarity=0.784  Sum_probs=349.5

Q ss_pred             cccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-CCCCcCCCCcchHHHHHH
Q 012238           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GENKEYLPIEGLAAFNKV  134 (467)
Q Consensus        56 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~~~~~Y~~~~G~~~lr~a  134 (467)
                      +|.|++++..|+++|+++++++++++++++|||++|.|+|+++.+++++.|+++.+.+... ...++|.|..|+++||++
T Consensus         3 ~s~~~~~~~~~~~~i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lrea   82 (412)
T d1ajsa_           3 PSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTC   82 (412)
T ss_dssp             CCTTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHH
T ss_pred             cChhhhCCcCCCChHHHHHHHHhcCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHH
Confidence            4789999999999999999999999899999999999999999988889999998877643 344679999999999999


Q ss_pred             HHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-----hCCCCEEEEcCCCCcchHHHHhhCCCCeEEee-eec
Q 012238          135 TAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-----YFPGAKVLISSPTWGNHKNIFNDARVPWSEYR-YYD  208 (467)
Q Consensus       135 ia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-----~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~-~~~  208 (467)
                      +++++.+.++..++++++++++|.|+++++..+..++..     +.|||+|++++|+|+.|..+++..|++++.++ ..+
T Consensus        83 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~  162 (412)
T d1ajsa_          83 ASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWD  162 (412)
T ss_dssp             HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEE
T ss_pred             HHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHcCCeEEEeecccc
Confidence            999999999999999999888899999888876545443     36999999999999999999999999877654 445


Q ss_pred             CCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012238          209 PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (467)
Q Consensus       209 ~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~  288 (467)
                      +..+.+|++.+++.+....++++++++|+||||||.+++.+++++|+++|++||++||+||+|.++.+++.+.+......
T Consensus       163 ~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~  242 (412)
T d1ajsa_         163 TEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRY  242 (412)
T ss_dssp             TTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHH
T ss_pred             cccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhh
Confidence            66678999999988877678899999999999999999999999999999999999999999999998753222233334


Q ss_pred             HHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChh
Q 012238          289 FATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPA  368 (467)
Q Consensus       289 ~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~  368 (467)
                      .....+.++++.|+||.++++|||+||++......+.+..        +...+.......+.+++.+.|.++..++.+..
T Consensus       243 ~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (412)
T d1ajsa_         243 FVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILR--------VLSQMQKIVRVTWSNPPAQGARIVARTLSDPE  314 (412)
T ss_dssp             HHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHH--------HHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHH
T ss_pred             hhhhcccccccccccccccCCCCCccccccchhHHHHHHH--------HHHHHHHHhhccccccchHHHHHHHHHhcCHH
Confidence            4556788999999999999999999999733223333333        44555556666788899999999999999988


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCC
Q 012238          369 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLS  448 (467)
Q Consensus       369 ~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~  448 (467)
                      ..++|.++++.++++++++|+.+.+.|+ +++.++.|.++.+++|||+|++++.+++++|++++||+++||+|||+++++
T Consensus       315 ~~~~~~~~~~~~~~~l~~~r~~l~~~L~-~~~~~~~~~~i~~~~G~F~~~~ls~~~v~~L~~e~gV~~vpg~Ri~~ag~~  393 (412)
T d1ajsa_         315 LFHEWTGNVKTMADRILSMRSELRARLE-ALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLT  393 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCSSCCHHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTSEEEGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCeeeecCCCeEEEecCCCHHHHHHHHHhCCEEEeCCCeEEeccCC
Confidence            8888889999999999999999999999 988877788899999999999999999999999999999999999999889


Q ss_pred             hhhHHHHHHHHHHHHHhcC
Q 012238          449 LAKCEYLADAIIDSYHNVS  467 (467)
Q Consensus       449 ~~~i~~~~~~l~~~l~~~~  467 (467)
                      ++++++++++|++++++++
T Consensus       394 ~~~i~~~a~aI~~av~~~~  412 (412)
T d1ajsa_         394 TKNLDYVATSIHEAVTKIQ  412 (412)
T ss_dssp             TTTHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999875

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-60  Score=476.34  Aligned_cols=396  Identities=43%  Similarity=0.754  Sum_probs=328.1

Q ss_pred             cccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHH
Q 012238           58 RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE  137 (467)
Q Consensus        58 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~  137 (467)
                      .|++++..|+|+|+++.+++++++++++|||++|.|+|+++.+++++.|++|+.++++++..++|.|..|+++||+++++
T Consensus         1 ~f~~~~~~p~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~   80 (396)
T d2q7wa1           1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQE   80 (396)
T ss_dssp             -CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHH
T ss_pred             CccccccCCCChHHHHHHHHhccCCCCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHH
Confidence            36889999999999999999988888999999999999999888889999999998876666789999999999999999


Q ss_pred             HHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChh
Q 012238          138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE  217 (467)
Q Consensus       138 ~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~  217 (467)
                      ++.+.++..+.++++..+++.|+++++.++..++..+.+||.|++++|+|+.|..+++.+|++++.+++++++++..++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~  160 (396)
T d2q7wa1          81 LLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD  160 (396)
T ss_dssp             HHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHH
T ss_pred             HHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcCCeeEecccccccccccccc
Confidence            99999888888888777778888888888766666678999999999999999999999999999999987877888999


Q ss_pred             hHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012238          218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (467)
Q Consensus       218 ~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  297 (467)
                      .+.+.......+++++++++||||||.+++.+++++|+++|++|+++||+||+|+++.+++. ..........+..++++
T Consensus       161 ~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~~~~~~~~  239 (396)
T d2q7wa1         161 ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLE-EDAEGLRAFAAMHKELI  239 (396)
T ss_dssp             HHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHH-HHTHHHHHHHHHCSCEE
T ss_pred             hHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCc-cCchHhhhhhhhccccc
Confidence            98888877778899999999999999999999999999999999999999999999998631 12223333445678899


Q ss_pred             EEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l  377 (467)
                      ++.|+||.++++|||+||++   .+...++.     ...+...+....+..+.+++...|.++..++.++....+|++++
T Consensus       240 ~~~s~sk~~~~~G~R~G~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~  311 (396)
T d2q7wa1         240 VASSYSKNFGLYNERVGACT---LVAADSET-----VDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQEL  311 (396)
T ss_dssp             EEEECTTTTTCGGGCCEEEE---EECSSHHH-----HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             ccccccccccccCCCccccc---cchhHHHH-----HHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHH
Confidence            99999999999999999997   33333332     01133333444556678899999999999999988888889999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHHHHHH
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLAD  457 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~~~~~  457 (467)
                      +.++++++++|+.+.+.|+ +++.++.|.++.+++|+|+|++++.+++++|++++||++.||||||++++++++++++++
T Consensus       312 ~~~~~~~~~~r~~l~~~L~-~~~~~~~~~~~~~~~G~F~~~~l~~e~~~~L~~e~gV~~~~g~Ri~~a~l~~~~i~~~~~  390 (396)
T d2q7wa1         312 TDMRQRIQRMRQLFVNTLQ-EKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCE  390 (396)
T ss_dssp             HHC-CHHHHHHHHHHHHHH-HTTCCSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-HhCCCCCcceecCCCeEEEeeCCCHHHHHHHHHhCCEEECCCCEEEecCCCHHHHHHHHH
Confidence            9999999999999999999 988877788889999999999999999999999999999999999999989999999999


Q ss_pred             HHHHHH
Q 012238          458 AIIDSY  463 (467)
Q Consensus       458 ~l~~~l  463 (467)
                      +|.+++
T Consensus       391 ai~~v~  396 (396)
T d2q7wa1         391 AIVAVL  396 (396)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            999874

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.3e-61  Score=479.19  Aligned_cols=396  Identities=41%  Similarity=0.730  Sum_probs=338.5

Q ss_pred             cccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-CCCCcCCCCcchHHHHHHHH
Q 012238           58 RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GENKEYLPIEGLAAFNKVTA  136 (467)
Q Consensus        58 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~~~~~Y~~~~G~~~lr~aia  136 (467)
                      .|++++..|.|+|+++.+++++++++++|||++|.|+|+++.+++++.|++|...+... ...+.|+|..|+++||++++
T Consensus         1 ~~~~~~~~~~dpi~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia   80 (397)
T d3tata_           1 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIA   80 (397)
T ss_dssp             CCCCCCCCCCCTTTTHHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHH
T ss_pred             CcccCCCCCCCcHHHHHHHHhcCCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHH
Confidence            37889999999999999999999999999999999999988888889999998876533 33467999999999999999


Q ss_pred             HHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCCh
Q 012238          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (467)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  216 (467)
                      +++.+.++..+++++|++.++.+++++..+.+.+...+.|||+|++++|+|+.|..+++.+|++++.+|++++.++..|.
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~  160 (397)
T d3tata_          81 PLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRF  160 (397)
T ss_dssp             HHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCH
T ss_pred             HHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcCCEEEEEecchhhccccch
Confidence            99999999999999998844444444444433345567899999999999999999999999999999998788888999


Q ss_pred             hhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012238          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (467)
Q Consensus       217 ~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~  296 (467)
                      +.+.+.+...+++++++++++||||||.+++.+++++|+++|++++++||+||+|+++.++. +.............+++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~-~~~~~~~~~~~~~~~~~  239 (397)
T d3tata_         161 NDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM-EEDAYAIRAIASAGLPA  239 (397)
T ss_dssp             HHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCH-HHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCC-cccchhhhhhhhcCCce
Confidence            99999888777888999999999999999999999999999999999999999999999863 11222333334456789


Q ss_pred             EEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHH
Q 012238          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAE  376 (467)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  376 (467)
                      +++.|+||.++++|||+||++......+...+        +...+.......+.+++...|.++...+.++....+|.++
T Consensus       240 i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~  311 (397)
T d3tata_         240 LVSNSFSKIFSLYGERVGGLSVMCEDAEAAGR--------VLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAE  311 (397)
T ss_dssp             EECBCCHHHHTBTTTCCBCCEEECSSTTHHHH--------HHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             EEEecCcccccccCccccccccchhHHHHHHH--------HHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHH
Confidence            99999999999999999999732222223333        4444555566667888999999999999999998999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHHHHH
Q 012238          377 MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLA  456 (467)
Q Consensus       377 l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~~~~  456 (467)
                      ++.++++++++|+.+.+.|. ..+.++.|.+.++++|||+|++++.+++++|++++||++.||+||||+++++++++++.
T Consensus       312 ~~~~~~~~~~~r~~l~~~L~-~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~L~~e~~V~l~~g~Ri~~a~~~~~~i~~~~  390 (397)
T d3tata_         312 VEEMRTRILAMRQELVKVLS-TEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVA  390 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHTTT-TTCTTSCTTHHHHCCSSBCCCCCCHHHHHHHTTTTCEECCSSSCCBTTSCCTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HhCCCCceEEEcCCCceEEecCcCHHHHHHHHHhCCEEeCCCCEEEeccCCHHHHHHHH
Confidence            99999999999999999999 87766678889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 012238          457 DAIIDSY  463 (467)
Q Consensus       457 ~~l~~~l  463 (467)
                      ++|.+++
T Consensus       391 ~ai~~v~  397 (397)
T d3tata_         391 KAFAAVM  397 (397)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9998874

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=1.1e-58  Score=463.71  Aligned_cols=391  Identities=37%  Similarity=0.647  Sum_probs=334.1

Q ss_pred             ccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHH
Q 012238           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (467)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~  138 (467)
                      ++.+...++++|+++++++++++++++|||++|.|+|+++.|++++.|++|++++++....++|.|..|+++||++++++
T Consensus         2 ~~~~~~~~~d~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~   81 (394)
T d2ay1a_           2 LGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGEL   81 (394)
T ss_dssp             GGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHH
T ss_pred             CCCCCCCCCChHHHHHHHHhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHH
Confidence            46688899999999999999999999999999999999999988899999999988765557899999999999999999


Q ss_pred             HhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhh
Q 012238          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG  218 (467)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~  218 (467)
                      +.+.++....++.++   +.||+++..+++.++....+||.|++++|+|+.|..+++.+|.+++.+++.++..+..+.+.
T Consensus        82 ~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~  158 (394)
T d2ay1a_          82 ILGDGLKSETTATLA---TVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEG  158 (394)
T ss_dssp             HHGGGCCGGGEEEEE---EEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHH
T ss_pred             Hhcccccccccccee---ccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHcCCEEEEecccchhcccccchh
Confidence            987766554444443   56666666665446666789999999999999999999999999999999877778888899


Q ss_pred             HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238          219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (467)
Q Consensus       219 l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (467)
                      +++.....+++++++++++||||||.+++.+++++|+++|++|+++||+||+|+++.++.. ..............++++
T Consensus       159 ~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~~~~~~~~~  237 (394)
T d2ay1a_         159 MKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLE-EDAAGTRLIASRIPEVLI  237 (394)
T ss_dssp             HHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHH-HHHHHHHHHHHHCSSEEE
T ss_pred             HHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhccccc-ccchhhhhhhhhcccccc
Confidence            9888887778899999999999999999999999999999999999999999999998631 111222222345568999


Q ss_pred             EecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                      +.|+||.++++|||+||+++.....+....        +..++.......+.+++...|.++...+.++.+.++|.++++
T Consensus       238 ~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  309 (394)
T d2ay1a_         238 AASCSKNFGIYRERTGCLLALCADAATREL--------AQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELE  309 (394)
T ss_dssp             EEECTTTTTCGGGCEEEEEEECSSHHHHHH--------HHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             cccccccccCCcccccchhhchhHHHHHHH--------hhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            999999999999999999743332333333        444455555566778889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHHHHHHH
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADA  458 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~~~~~~  458 (467)
                      .++++++++|+.+.+.|+ +++.++.|.++.+++|||+|++++.+++++|++++||++.||+||||++++++++++++++
T Consensus       310 ~~~~~~~~~r~~l~~~L~-~~~~~~~~~~~~~~~G~F~~~~ls~~~~~~L~~~~~V~~~~g~Ri~~a~l~~~~i~~l~~a  388 (394)
T d2ay1a_         310 AVRSGMLRLREQLAGELR-DLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARA  388 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHTSSTTTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-HhCCCCceeeECCCceeEEecCcCHHHHHHHHHhCCEEecCCCEEEecCCCHHHHHHHHHH
Confidence            999999999999999999 8876667888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 012238          459 IIDS  462 (467)
Q Consensus       459 l~~~  462 (467)
                      |.++
T Consensus       389 i~~v  392 (394)
T d2ay1a_         389 IIEV  392 (394)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9876

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=100.00  E-value=6e-55  Score=435.37  Aligned_cols=365  Identities=17%  Similarity=0.178  Sum_probs=303.3

Q ss_pred             cCCCCCCCCcccchH---HHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHH
Q 012238           60 EGVTMAPPDPILGVS---EAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA  136 (467)
Q Consensus        60 ~~~~~~~~~~i~~~~---~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia  136 (467)
                      +++...+++++..+.   ++++. .+.++|||++|+|    ++++ |+.+++++.+.++.+. .+|++..|.++||++++
T Consensus         5 ~~~~~~~~s~~~~i~~~a~~~~~-~g~~vi~l~~G~p----~~~~-p~~v~~a~~~~~~~~~-~~Y~~~~G~~~lR~aia   77 (388)
T d1j32a_           5 ARVESVSPSMTLIIDAKAKAMKA-EGIDVCSFSAGEP----DFNT-PKHIVEAAKAALEQGK-TRYGPAAGEPRLREAIA   77 (388)
T ss_dssp             HHHHTSCCCSSTTTHHHHHHHHT-TTCCCEECCCSSC----SSCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHH
T ss_pred             hHhhcCCcCHHHHHHHHHHHHHH-CCCCeEECCCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHH
Confidence            344445555554444   44443 4568999999998    5665 7889999999887664 78999999999999999


Q ss_pred             HHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCCh
Q 012238          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (467)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  216 (467)
                      +++...+|..+++++|++  |+|+++++.++  +...+.|||+|++++|+|+.|...++..|++++.++..+++++.+|+
T Consensus        78 ~~~~~~~g~~~~~~~i~i--t~G~~~al~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~  153 (388)
T d1j32a_          78 QKLQRDNGLCYGADNILV--TNGGKQSIFNL--MLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSP  153 (388)
T ss_dssp             HHHHHHHCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCH
T ss_pred             HHHHHhcccCCCCceEEE--cCCHHHHHHHH--HHHHhCCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCH
Confidence            999888888899999999  99999999998  44557899999999999999999999999999999987777889999


Q ss_pred             hhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcCCe
Q 012238          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGME  295 (467)
Q Consensus       217 ~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~~~~~  295 (467)
                      +++++.++   ++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.++.....  ++.... ...++
T Consensus       154 ~~l~~~~~---~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~--s~~~~~~~~~~~  228 (388)
T d1j32a_         154 EQIRQAIT---PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHL--SIGAASPEAYER  228 (388)
T ss_dssp             HHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCC--CGGGSCHHHHHT
T ss_pred             HHHHHhCC---CCCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCC--CHHHhCcccccc
Confidence            99999887   6788999999999999999999999999999999999999999999988743221  221111 12257


Q ss_pred             EEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH
Q 012238          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA  375 (467)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  375 (467)
                      +++++||||.|++||+|+||++   +++++++.            +.+.......+++...|.++...+.+.      ++
T Consensus       229 ~i~~~S~SK~~~~~GlRvG~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~q~a~~~~~~~~------~~  287 (388)
T d1j32a_         229 SVVCSGFAKTYAMTGWRVGFLA---GPVPLVKA------------ATKIQGHSTSNVCTFAQYGAIAAYENS------QD  287 (388)
T ss_dssp             EEEEEESTTTTTCTTTCCEEEE---CCHHHHHH------------HHHHHHTTTCSCCHHHHHHHHHHHHSC------SH
T ss_pred             eeEecCChhhhhcchhHeEEEE---ECHHHHHH------------HHHhhhhccccccHHHHHHHhhcccch------HH
Confidence            9999999999999999999995   88888877            555555556678888888887776544      34


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-----C-HHHHHHHHHcccEEEeCC---C-----e
Q 012238          376 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKD---G-----R  441 (467)
Q Consensus       376 ~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~g---g-----R  441 (467)
                      ++++.++.++++++.+.+.|+ +.+   .+.+..|+||||+|+++     + .++++++++++||.+.||   |     |
T Consensus       288 ~~~~~~~~~~~~~~~~~~~l~-~~~---g~~~~~p~gg~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~R  363 (388)
T d1j32a_         288 CVQEMLAAFAERRRYMLDALN-AMP---GLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIR  363 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TCT---TCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hCC---CCEecCCCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEE
Confidence            578899999999999999998 763   26888999999999865     2 366888998899999998   2     9


Q ss_pred             EEeccCChhhHHHHHHHHHHHHHhc
Q 012238          442 ISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       442 is~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      |+|+. +++++++++++|+++++.+
T Consensus       364 ls~~~-~~e~l~~al~rl~~~l~~l  387 (388)
T d1j32a_         364 LSYAT-DLDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             EECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeC-CHHHHHHHHHHHHHHHHHh
Confidence            99997 8899999999999999875

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1e-53  Score=425.69  Aligned_cols=362  Identities=17%  Similarity=0.155  Sum_probs=299.1

Q ss_pred             cCCCCCCCCcccchHHHhh--cCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHH
Q 012238           60 EGVTMAPPDPILGVSEAFK--ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE  137 (467)
Q Consensus        60 ~~~~~~~~~~i~~~~~~~~--~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~  137 (467)
                      .++...+|+++.++.+..+  +..+.++|+|++|+|    ++|+ |+.+++++.+++.++. .+|++..|.++||+++++
T Consensus         6 ~r~~~~~~s~~~~i~~~a~~~~~~G~~vi~l~~g~p----~~~~-p~~i~~a~~~~~~~~~-~~Y~~~~G~~~lR~~ia~   79 (382)
T d1b5pa_           6 RRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEP----DFDT-PEHVKEAARRALAQGK-TKYAPPAGIPELREALAE   79 (382)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSC----SSCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhCCCCeEECCCCCC----CCCC-CHHHHHHHHHHHhcCC-cCCCCCCCCHHHHHHHHh
Confidence            3344456666766654332  234568999999998    6665 8899999999887664 789999999999999999


Q ss_pred             HHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChh
Q 012238          138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE  217 (467)
Q Consensus       138 ~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~  217 (467)
                      ++...++..+++++|++  |+|+++++.++  +...+.+||+|++++|+|+.|...++..|++++.+++.+++++.+|++
T Consensus        80 ~~~~~~~~~~~~~~i~i--t~G~~~al~~~--~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  155 (382)
T d1b5pa_          80 KFRRENGLSVTPEETIV--TVGGSQALFNL--FQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPE  155 (382)
T ss_dssp             HHHHTTCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHH
T ss_pred             hhhhhccccccccccee--cCCHHHHHHHH--HHHhCCCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHH
Confidence            99888899999999999  99999999998  445678999999999999999999999999999999877778899999


Q ss_pred             hHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012238          218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (467)
Q Consensus       218 ~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  297 (467)
                      .+++.++   ++++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++...  .+   .....++++
T Consensus       156 ~l~~~~~---~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~--~~---~~~~~~~~i  227 (382)
T d1b5pa_         156 RVRRAIT---PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHF--SP---GRVAPEHTL  227 (382)
T ss_dssp             HHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCC--CG---GGTCTTTEE
T ss_pred             HHHHhCC---CCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCC--CH---HHcCCCCEE
Confidence            9998876   678899999999999999999999999999999999999999999999864221  11   122446899


Q ss_pred             EEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l  377 (467)
                      +++||||.|++||+|+||++   +++++++.            +.........+++...|.++...+.+....   ...+
T Consensus       228 ~~~s~SK~~~~~GlR~G~~~---~~~~~i~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  289 (382)
T d1b5pa_         228 TVNGAAKAFAMTGWRIGYAC---GPKEVIKA------------MASVSRQSTTSPDTIAQWATLEALTNQEAS---RAFV  289 (382)
T ss_dssp             EEEESTTTTTCGGGCCEEEE---CCHHHHHH------------HHHHHHTTTCSCCHHHHHHHHHHHHCHHHH---HHHH
T ss_pred             EEecchhhccCcHhheEEEE---ECHHHHHH------------HHHHHHhcccCcccccccccccccccccch---hHHH
Confidence            99999999999999999995   78888877            655555556677888887777776654433   3446


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-----CHHHHHHHHHcccEEEeCC------C--eEEe
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD------G--RISL  444 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g------g--Ris~  444 (467)
                      ...++.++++++.+.+.+. ..|    +++..|+||+|+|+++     +...+.+++.++||.+.||      |  ||+|
T Consensus       290 ~~~~~~~~~~~~~~~~~l~-~~g----~~~~~p~gg~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~  364 (382)
T d1b5pa_         290 EMAREAYRRRRDLLLEGLT-ALG----LKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSY  364 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHT----CCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEEC
T ss_pred             HHHHHHHHhhhhHHHHHHh-hcC----CeEecCCceEEEeEeCCCCCCCHHHHHHHHHHCCEEEEeCcccCCCCeEEEEE
Confidence            7888889999999999998 887    5788899999999855     4455555555679999998      2  9999


Q ss_pred             ccCChhhHHHHHHHHHHHH
Q 012238          445 AGLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       445 ~~~~~~~i~~~~~~l~~~l  463 (467)
                      +. +++++++++++|++++
T Consensus       365 ~~-~~e~l~~al~rl~~~L  382 (382)
T d1b5pa_         365 AT-SEENLRKALERFARVL  382 (382)
T ss_dssp             CS-CHHHHHHHHHHGGGGC
T ss_pred             cC-CHHHHHHHHHHHHHhC
Confidence            87 8899999999988764

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.9e-53  Score=424.73  Aligned_cols=364  Identities=18%  Similarity=0.187  Sum_probs=302.4

Q ss_pred             CCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHh
Q 012238           61 GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLF  140 (467)
Q Consensus        61 ~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~  140 (467)
                      ++...+++.|.++.+....  .+++|||++|+|    ++++ |+.+++++.+.++.+. .+|+|..|.++||+++|+++.
T Consensus         5 ~~~~~~~s~ir~~~~~~~~--~~dvi~l~~g~p----~~~~-p~~v~~~~~~a~~~~~-~~Y~~~~G~~~lr~aia~~~~   76 (388)
T d1gdea_           5 RLELVSASEIRKLFDIAAG--MKDVISLGIGEP----DFDT-PQHIKEYAKEALDKGL-THYGPNIGLLELREAIAEKLK   76 (388)
T ss_dssp             HHHHSCCCHHHHHHHHHHH--CTTCEECCCCSC----CSCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHH
T ss_pred             hhhhCCccHHHHHHHHHhC--CCCeEECCCCCC----CCCC-CHHHHHHHHHHHhcCc-cCCCCCcCCHHHHHHHHHHHH
Confidence            3444466777777665543  358999999998    5665 7899999999887654 789999999999999999986


Q ss_pred             CCCCc-ccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhH
Q 012238          141 GADNS-VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGM  219 (467)
Q Consensus       141 ~~~~~-~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l  219 (467)
                      ..++. ...+++|++  |+|+++++.++  +...+.|||+|++++|+|..|...++..|++++.+|+++++++++|++.+
T Consensus        77 ~~~~~~~~~~~~i~~--t~G~~~~l~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l  152 (388)
T d1gdea_          77 KQNGIEADPKTEIMV--LLGANQAFLMG--LSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDEL  152 (388)
T ss_dssp             HHHCCCCCTTTSEEE--ESSTTHHHHHH--HTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHH
T ss_pred             hhccccCCChheeee--ccCcchHHHHH--HHHhcCCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHH
Confidence            54333 344678998  99999999997  45557799999999999999999999999999999998777889999999


Q ss_pred             HHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012238          220 IADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (467)
Q Consensus       220 ~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (467)
                      ++.++   ++++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++..  ..++..+....+++|++
T Consensus       153 ~~~~~---~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~--~~~~~~~~~~~~~~i~~  227 (388)
T d1gdea_         153 KKYVT---DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDAR--HYSIASLDGMFERTITV  227 (388)
T ss_dssp             HHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC--CCCGGGSTTCGGGEEEE
T ss_pred             HHhCc---cCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCC--CCChhhccCCCCeEEEE
Confidence            99887   67889999999999999999999999999999999999999999999876422  22222222334689999


Q ss_pred             ecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM  379 (467)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~  379 (467)
                      +||||.|++||+|+||++   +++++++.            +.........+++...|.++..++.++..    .++++.
T Consensus       228 ~S~SK~~~~~GlR~G~ii---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~  288 (388)
T d1gdea_         228 NGFSKTFAMTGWRLGFVA---APSWIIER------------MVKFQMYNATCPVTFIQYAAAKALKDERS----WKAVEE  288 (388)
T ss_dssp             EESTTTTTCGGGCCEEEE---CCHHHHHH------------HHHHHHTTTCSCCHHHHHHHHHHHTCHHH----HHHHHH
T ss_pred             eCChhhccCccccEEEEE---eeccchhh------------hhhccccccccccccchhhHHHHHhhccc----hhHHHH
Confidence            999999999999999996   88888777            66666666778888889999888887644    455778


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-----C-HHHHHHHHHcccEEEeCC--------C--eEE
Q 012238          380 MAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKD--------G--RIS  443 (467)
Q Consensus       380 ~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~g--------g--Ris  443 (467)
                      .++.++++++.+.+.+. ..+    +.+..|+||+|+|+++     + .++++++++++||.+.||        +  |||
T Consensus       289 ~~~~~~~~~~~~~~~l~-~~~----~~~~~p~gg~fl~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis  363 (388)
T d1gdea_         289 MRKEYDRRRKLVWKRLN-EMG----LPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRIS  363 (388)
T ss_dssp             HHHHHHHHHHHHHHHHH-HTT----CCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEE
T ss_pred             HHHHHHHhhhhhhhhhh-hcc----ccccCCCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEE
Confidence            88899999999999998 776    4677899999999854     3 356788888899999987        2  999


Q ss_pred             eccCChhhHHHHHHHHHHHHHhc
Q 012238          444 LAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       444 ~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      |+. +++++++++++|++++++.
T Consensus       364 ~~~-~~e~l~~al~rL~~~l~e~  385 (388)
T d1gdea_         364 YAT-AYEKLEEAMDRMERVLKER  385 (388)
T ss_dssp             CCS-CHHHHHHHHHHHHHHHHHT
T ss_pred             ecC-CHHHHHHHHHHHHHHHHhc
Confidence            987 8899999999999999875

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=4.8e-52  Score=415.26  Aligned_cols=358  Identities=17%  Similarity=0.146  Sum_probs=292.8

Q ss_pred             chHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCc
Q 012238           72 GVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQR  151 (467)
Q Consensus        72 ~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~  151 (467)
                      ..++++++. +.++|+|++|+|.+. ++++ |+.+++++.+.+..+. .+|++..|.++||+++++++...+|..+++++
T Consensus        20 ~~a~~l~~~-G~~vi~l~~G~P~~~-df~~-p~~i~~a~~~a~~~~~-~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~   95 (395)
T d1xi9a_          20 LPARELEKK-GIKVIRLNIGDPVKF-DFQP-PEHMKEAYCKAIKEGH-NYYGDSEGLPELRKAIVEREKRKNGVDITPDD   95 (395)
T ss_dssp             -CHHHHHHT-TCCCEECCCCCGGGT-TCCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGG
T ss_pred             HHHHHHHHC-CCCeEECCCCCCCCC-CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHhhhhcccccccccc
Confidence            334555543 568999999998332 4554 7899999999987654 78999999999999999999888889999999


Q ss_pred             eeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcE
Q 012238          152 VATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (467)
Q Consensus       152 i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (467)
                      |++  |+|+++++.++  +...+.+||+|++++|+|+.|...++..|++++.+++..++++.+|++.+++.+.   ++++
T Consensus        96 i~i--~~G~~~~~~~~--~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~---~~~~  168 (395)
T d1xi9a_          96 VRV--TAAVTEALQLI--FGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKIT---DRTK  168 (395)
T ss_dssp             EEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCC---TTEE
T ss_pred             ccc--ccccchhhhhh--hhhhcCCCCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhc---cccc
Confidence            999  99999999997  5556779999999999999999999999999999998877788999999999886   6788


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCC
Q 012238          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (467)
Q Consensus       232 ~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~  311 (467)
                      ++++++||||||.+++.+++++|+++|++||++||+||+|.++.++...   .+. ......+++|+++||||.|++||+
T Consensus       169 ~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~---~~~-~~~~~~~~vi~~~S~SK~~~~~Gl  244 (395)
T d1xi9a_         169 AIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEH---ISP-GSLTKDVPVIVMNGLSKVYFATGW  244 (395)
T ss_dssp             EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCC---CCH-HHHCSSSCEEEEEESTTTTCCGGG
T ss_pred             EEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccc---cch-hhcCCCCCEEEEeCcchhcccchh
Confidence            9999999999999999999999999999999999999999999886421   122 222445689999999999999999


Q ss_pred             ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012238          312 RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL  391 (467)
Q Consensus       312 RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l  391 (467)
                      |+||+++ ..+.+.+..        +....... .....+++.++|.++..++.+.      .+++++.++.++++|+.+
T Consensus       245 RvG~~~~-~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~q~a~~~~l~~~------~~~~~~~~~~~~~~~~~l  308 (395)
T d1xi9a_         245 RLGYMYF-VDPENKLSE--------VREAIDRL-ARIRLCPNTPAQFAAIAGLTGP------MDYLKEYMKKLKERRDYI  308 (395)
T ss_dssp             CCEEEEE-ECTTCTTHH--------HHHHHHHH-HHHTCCSCSHHHHHHHHHHHSC------CHHHHHHHHHHHHHHHHH
T ss_pred             hcEeeEe-cCHHHHHHH--------HHHHHHHh-hcCCCCcCHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHH
Confidence            9999863 234433333        22212222 2234567778888888777654      234778889999999999


Q ss_pred             HHHhhhccCCCCCcccccCCcceEEecCC-------CHHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHH
Q 012238          392 FDSLSAKDKSGKDWSFILRQIGMFSFTGL-------NKAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEY  454 (467)
Q Consensus       392 ~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-------~~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~  454 (467)
                      .+.|+ +++.   +.+..|+||+|+|+++       +.+++.++++++||.+.||        |  ||+|+. +++++++
T Consensus       309 ~~~L~-~~~~---~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~-~~e~l~e  383 (395)
T d1xi9a_         309 YKRLN-EIPG---ISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEE  383 (395)
T ss_dssp             HHHHH-TSTT---EECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCS-CHHHHHH
T ss_pred             HHHHH-hCCC---ceecCCCeeEEEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecC-CHHHHHH
Confidence            99999 7753   6778899999999743       3467889999899999997        2  999987 8899999


Q ss_pred             HHHHHHHHHHh
Q 012238          455 LADAIIDSYHN  465 (467)
Q Consensus       455 ~~~~l~~~l~~  465 (467)
                      ++++|++++++
T Consensus       384 al~rl~~~l~e  394 (395)
T d1xi9a_         384 AMDRFEKFMKE  394 (395)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999999875

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.2e-50  Score=398.55  Aligned_cols=346  Identities=17%  Similarity=0.180  Sum_probs=287.8

Q ss_pred             chHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCc
Q 012238           72 GVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQR  151 (467)
Q Consensus        72 ~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~  151 (467)
                      +.++++.+ .+.++|||++|.|    .+++ |+.+++++.+.+.++. .+|++..|.++||+++++++...++..+++++
T Consensus        18 ~~a~~~~~-~G~~vI~l~~G~p----~~~~-p~~i~~~~~~~~~~~~-~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~   90 (375)
T d1o4sa_          18 AKAKALIK-KGEDVINLTAGEP----DFPT-PEPVVEEAVRFLQKGE-VKYTDPRGIYELREGIAKRIGERYKKDISPDQ   90 (375)
T ss_dssp             HHHHHHHH-TTCCCEECCCSSC----SSCC-CHHHHHHHHHHHTTCC-CCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGG
T ss_pred             HHHHHHHH-CCCCeEECCCcCC----CCCC-CHHHHHHHHHHHhcCC-cCCCCCcCCHHHHHHHHhhhhhcccccccccc
Confidence            33344443 3568999999998    5665 7899999999887654 78999999999999999999888888889999


Q ss_pred             eeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcE
Q 012238          152 VATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (467)
Q Consensus       152 i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (467)
                      |++  |+|+++++.++  +...+.+||+|++++|+|+.|...+...|...+.++..+++.+.+|.+.++....   .+++
T Consensus        91 i~~--t~G~~~al~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  163 (375)
T d1o4sa_          91 VVV--TNGAKQALFNA--FMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLV---GKTK  163 (375)
T ss_dssp             EEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCC---TTEE
T ss_pred             ccc--cCcHHHHHHHH--HHHHhCCCCEEEEccCccccchhhhhccccccccccccccccccchhHHHHHhhc---cCcc
Confidence            999  99999999997  4556789999999999999999999999999999998777788889888877655   6788


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCC
Q 012238          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (467)
Q Consensus       232 ~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~  311 (467)
                      +++++|||||||.+++.+++++|+++|++|+++||+||+|.++.++...   .......+..+++++++||||.|++||+
T Consensus       164 ~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~---~~~~~~~~~~~~~i~~~S~SK~~~l~G~  240 (375)
T d1o4sa_         164 AVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEF---TSILDVSEGFDRIVYINGFSKSHSMTGW  240 (375)
T ss_dssp             EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCC---CCHHHHCSSSTTEEEEEESTTTTTCGGG
T ss_pred             EEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccc---cccccccCCCCCEEEEeechhhccCCcc
Confidence            9999999999999999999999999999999999999999999876422   2222344556799999999999999999


Q ss_pred             ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012238          312 RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL  391 (467)
Q Consensus       312 RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l  391 (467)
                      |+||++   ++++.++.            +...........+...+......+...         ....++.++++++.+
T Consensus       241 R~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~r~~~~  296 (375)
T d1o4sa_         241 RVGYLI---SSEKVATA------------VSKIQSHTTSCINTVAQYAALKALEVD---------NSYMVQTFKERKNFV  296 (375)
T ss_dssp             CCEEEE---CCHHHHHH------------HHHHHHHHTCSCCHHHHHHHHHHTTCC---------CHHHHHHHHHHHHHH
T ss_pred             cccccc---ccccchhh------------hhhhhccccccccccchhhhhhhcccc---------hhhhHHHHHHHHHHH
Confidence            999996   88887776            444444445566666666665555433         345667788999999


Q ss_pred             HHHhhhccCCCCCcccccCCcceEEecCC---CHHHHHHHHHcccEEEeCC------C--eEEeccCChhhHHHHHHHHH
Q 012238          392 FDSLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYLADAII  460 (467)
Q Consensus       392 ~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~g------g--Ris~~~~~~~~i~~~~~~l~  460 (467)
                      .+.|+ +.|    +++..|+||||+|+.+   +.+++.++++++||.+.||      |  ||+|+. +++++++++++|+
T Consensus       297 ~~~l~-~~g----~~~~~p~gg~f~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~-~~e~l~~al~rl~  370 (375)
T d1o4sa_         297 VERLK-KMG----VKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT-SIERLTEALDRIE  370 (375)
T ss_dssp             HHHHH-HTT----CCCCCCSBSSEEEEECSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS-CHHHHHHHHHHHH
T ss_pred             HHHHH-hcC----ceEecCCccEEEEEECCCCHHHHHHHHHHhCCEEEEEccccCCCCeEEEEEcC-CHHHHHHHHHHHH
Confidence            99999 887    6888999999999865   3577889998889999997      2  999987 8899999999999


Q ss_pred             HHHH
Q 012238          461 DSYH  464 (467)
Q Consensus       461 ~~l~  464 (467)
                      ++++
T Consensus       371 ~~l~  374 (375)
T d1o4sa_         371 DFLN  374 (375)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            9886

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=100.00  E-value=4.1e-50  Score=404.28  Aligned_cols=369  Identities=13%  Similarity=0.039  Sum_probs=295.5

Q ss_pred             cccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHH
Q 012238           58 RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVT  135 (467)
Q Consensus        58 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~ai  135 (467)
                      +..++...+++...+..+...+   +++|||++|.|    .+++ |+.+++++.+++...  ..++|++..|.++||+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~---~~~I~L~~G~P----d~~~-p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReai   75 (418)
T d2r5ea1           4 LPKRYQGSTKSVWVEYIQLAAQ---YKPLNLGQGFP----DYHA-PKYALNALAAAANSPDPLANQYTRGFGHPRLVQAL   75 (418)
T ss_dssp             CCGGGTTCCCCHHHHHHHHHHH---HCCEECSSSCC----SSCC-CHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHH
T ss_pred             hhhhhcCCCCCHHHHHHHHhcC---CCCEEccCCCC----CCCC-CHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHH
Confidence            3455666666655555544432   37899999998    5554 788999999988543  235799999999999999


Q ss_pred             HHHHhCCCCccccc-CceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCC---
Q 012238          136 AELLFGADNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKT---  211 (467)
Q Consensus       136 a~~l~~~~~~~~~~-~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~---  211 (467)
                      |+++...+|..+++ ++|++  |+|+++++.++  +...+.|||.|++++|+|+.|...++..|.+++.++++++..   
T Consensus        76 A~~~~~~~g~~~~p~~~I~i--t~G~~~al~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~  151 (418)
T d2r5ea1          76 SKLYSQLVDRTINPMTEVLV--TVGAYEALYAT--IQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGT  151 (418)
T ss_dssp             HHHHHHHHTSCCCTTTSEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSC
T ss_pred             HHHHHHHhCCCCCccceEEE--cCCCchhhhhh--hhhccccccceeccccccchhhHHHHHcCCeEEEEEecccccccc
Confidence            99998877888875 78999  99999999998  455678999999999999999999999999999999865432   


Q ss_pred             -----CCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012238          212 -----VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (467)
Q Consensus       212 -----~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~  286 (467)
                           +.++++.+.+...   .+++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++..  ..++
T Consensus       152 ~~~~~~~~~~~~~~~~~~---~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~--~~s~  226 (418)
T d2r5ea1         152 ISSADWVLDNNELEALFN---EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFE--HIRI  226 (418)
T ss_dssp             EEGGGEECCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCG
T ss_pred             hhhhhhhhhHHHHhhhhh---ccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCc--cccc
Confidence                 3466777766654   78899999999999999999999999999999999999999999999886422  2222


Q ss_pred             HHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCC
Q 012238          287 RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGN  366 (467)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~  366 (467)
                      ..+.+..+++++++|+||.+++||+|+||++   +++++++.            +.+.......+++...|.++...+..
T Consensus       227 ~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~---~~~~~i~~------------~~~~~~~~~~~~~~~~q~a~~~~l~~  291 (418)
T d2r5ea1         227 CTLPGMWERTITIGSAGKTFSLTGWKIGWAY---GPEALLKN------------LQMVHQNCVYTCATPIQEAIAVGFET  291 (418)
T ss_dssp             GGSTTTGGGEEEEEEHHHHTTCGGGCCEEEE---SCHHHHHH------------HHHHHTTTTCSCCHHHHHHHHHHHHH
T ss_pred             cccccccceeeeeecCCccccCCCccccccc---ccchhhhh------------hhhcccccccccccchhhhccccccc
Confidence            2333445689999999999999999999996   88888887            66666655667777888777665542


Q ss_pred             hhh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-----------------CHHHHHHH
Q 012238          367 PAL-FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----------------NKAQSDNM  428 (467)
Q Consensus       367 ~~~-~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----------------~~~~~~~l  428 (467)
                      ... .+..++++.++++.++++|+.+.+.|+ +.|    +++..|+||||+|+++                 +.++++++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~-~~g----~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  366 (418)
T d2r5ea1         292 ELKRLKSPECYFNSISGELMAKRDYMASFLA-EVG----MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWM  366 (418)
T ss_dssp             HHTTTTSTTSHHHHHHHHHHHHHHHHHHHHH-HTT----CEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHH
T ss_pred             cccccccchhhHHHHHHHHHHhhhhHHhhHh-hcC----CcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHH
Confidence            211 111134477899999999999999999 887    6889999999999743                 23668889


Q ss_pred             HHcccEEEeCC-------------C--eEEeccCChhhHHHHHHHHHHHHH
Q 012238          429 TNKWHVYMTKD-------------G--RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       429 l~~~gI~v~~g-------------g--Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                      ++++||.+.||             |  ||||+. +++++++++++|++.+.
T Consensus       367 l~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~-~~e~l~~a~~rl~~~lg  416 (418)
T d2r5ea1         367 TKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK-KDENLQKAAEILRKWKG  416 (418)
T ss_dssp             HHHHSEECBCGGGGSCGGGHHHHTTEEEEECCS-CHHHHHHHHHHHHHHHT
T ss_pred             HHHCCEEEeCchhhCCCCCccCCCCEEEEEecC-CHHHHHHHHHHHHHHHc
Confidence            99899999997             2  999987 88999999999999864

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=7.9e-50  Score=401.53  Aligned_cols=370  Identities=15%  Similarity=0.160  Sum_probs=283.7

Q ss_pred             CCcccchHHHhhcCCCC-CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCC--
Q 012238           67 PDPILGVSEAFKADTDE-KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD--  143 (467)
Q Consensus        67 ~~~i~~~~~~~~~~~~~-~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~--  143 (467)
                      ..++..+.+.++..+++ ++|||++|+| |......+++.+.+++.+.++....++|+|..|.++||+++|+++.+.+  
T Consensus        13 ~~pir~~~~~~~~~~~~~~vI~L~~G~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~   91 (412)
T d1bw0a_          13 FNPIRTVSDNAKPSPSPKPIIKLSVGDP-TLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVH   91 (412)
T ss_dssp             CCHHHHHHHTCCCCCSCSCCEECCCCCT-TTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCC
T ss_pred             ccHHHHHHHhcCCCCCCCCcEECcCCCC-CCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCc
Confidence            34565566666544443 6899999998 3222233468888998888766555789999999999999999986542  


Q ss_pred             ----CcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhH
Q 012238          144 ----NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGM  219 (467)
Q Consensus       144 ----~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l  219 (467)
                          +..+++++|++  |+|+++++.++  +...+.+||+|++++|+|+.|..+++..|++++.+++++++++.++++.+
T Consensus        92 ~~~~~~~~~~~~I~i--t~G~~~al~~~--~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l  167 (412)
T d1bw0a_          92 KEELKSTIVKDNVVL--CSGGSHGILMA--ITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEI  167 (412)
T ss_dssp             STTTGGGCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHH
T ss_pred             ccccCCCCCCCeEEE--ecccccchhhh--hhhhhccccceeeeeccchhhhhhhhccCccccccccccccccchhhHHH
Confidence                45678999999  99999999998  45567899999999999999999999999999999998777888999999


Q ss_pred             HHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH-HHHHhcCCeEEE
Q 012238          220 IADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV-RLFATRGMELLV  298 (467)
Q Consensus       220 ~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~-~~~~~~~~~~i~  298 (467)
                      ++.+.   .++++++++|||||||.+++.+++++|+++|++||++||+||+|.++.+++........ ....+...++++
T Consensus       168 ~~~~~---~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (412)
T d1bw0a_         168 RRLKD---DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVI  244 (412)
T ss_dssp             HHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEE
T ss_pred             Hhhhh---ccccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCcccccccccccccccccc
Confidence            88776   68889999999999999999999999999999999999999999999987432111100 001123357899


Q ss_pred             EecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHh-CChhhHHHHHHHH
Q 012238          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVV-GNPALFDEWKAEM  377 (467)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L-~~~~~~~~~~~~l  377 (467)
                      ++||||.++++|||+||++  +.++ ....      ..+.......... ..+++...|..+...+ .+.      ++++
T Consensus       245 ~~s~SK~~~~~G~RvG~~~--~~~~-~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~  308 (412)
T d1bw0a_         245 LGGTAKNLVVPGWRLGWLL--YVDP-HGNG------PSFLEGLKRVGML-VCGPCTVVQAALGEALLNTP------QEHL  308 (412)
T ss_dssp             EEESTTTTSCGGGCCEEEE--EECT-TCSC------HHHHHHHHHHHHH-HTCSCHHHHHHHHHHHHSSC------HHHH
T ss_pred             ccccCccCccCCCCccccc--ccch-hhcc------hhhhhhhcccccc-ccCCchhhhhhccccccccc------cccc
Confidence            9999999999999999996  2322 1111      0011112222222 2334444444444333 332      3457


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcc-CCCCCcccccCCcceEEecCC----------CHHHHHHHHHcccEEEeCC------C
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFILRQIGMFSFTGL----------NKAQSDNMTNKWHVYMTKD------G  440 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~-g~~~~~~~~~~~~g~f~~~~l----------~~~~~~~ll~~~gI~v~~g------g  440 (467)
                      .+.+++++++|+.+.+.|. +. |    +.+..|+||||+|+.+          +.++++++++++||.+.||      |
T Consensus       309 ~~~~~~~~~~r~~~~~~l~-~~~g----~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g  383 (412)
T d1bw0a_         309 DQIVAKIEESAMYLYNHIG-ECIG----LAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPG  383 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TSTT----EEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTT
T ss_pred             ccccchhHHHHHHHHHHHH-HhcC----ceecCCCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCCC
Confidence            8899999999999999997 54 4    6888999999999643          3467899999899999997      2


Q ss_pred             --eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          441 --RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 --Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                        ||||+. +++++++++++|++.+++.
T Consensus       384 ~iRis~~~-~~e~l~eal~Rl~~~l~~~  410 (412)
T d1bw0a_         384 FTRLTTTR-PVEVYREAVERIKAFCQRH  410 (412)
T ss_dssp             EEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEcC-CHHHHHHHHHHHHHHHHhc
Confidence              999987 8899999999999998764

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-50  Score=402.46  Aligned_cols=366  Identities=15%  Similarity=0.109  Sum_probs=295.4

Q ss_pred             CCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-CCcCCCCcchHHHHHHHHHHH
Q 012238           61 GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELL  139 (467)
Q Consensus        61 ~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~l  139 (467)
                      |+....+++..+..+...   ++++|||++|.|    .+++ |+.+++++.+++..+. .++|+|..|.++||+++|+++
T Consensus         6 r~~~~~~~~~~~~~~~~~---~~dvI~l~~G~p----~~~~-p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~   77 (418)
T d1w7la_           6 RLDGIDYNPWVEFVKLAS---EHDVVNLGQGFP----DFPP-PDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFF   77 (418)
T ss_dssp             GGTTCCCCTHHHHHHHHH---TSCCEECCCCSC----SSCC-CHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHH
T ss_pred             cccCCCCCHHHHHHHHhC---CCCCEECCCCCC----CCCC-CHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHH
Confidence            444445555544444322   357999999998    5666 7899999999886432 357999999999999999999


Q ss_pred             hCCCCccccc-CceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecC---------
Q 012238          140 FGADNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP---------  209 (467)
Q Consensus       140 ~~~~~~~~~~-~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~---------  209 (467)
                      ...+|..+++ ++|++  |+|+++++.++  +...+.+||.|+++.|+|+.|...+...|++++.++..+.         
T Consensus        78 ~~~~g~~~~~~~~I~i--t~G~~~al~~~--~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~  153 (418)
T d1w7la_          78 GELLGQEIDPLRNVLV--TVGGYGALFTA--FQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGS  153 (418)
T ss_dssp             HHHHTCCCCHHHHEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEE
T ss_pred             HHHhCCCCCcccceee--ccCcHHHHHHH--HHhhccCCceeeccccccchhHHHHHHcCCEeecccccccccccccccc
Confidence            8777777775 68999  99999999998  4556779999999999999999999999999998886532         


Q ss_pred             -CCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012238          210 -KTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (467)
Q Consensus       210 -~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~  288 (467)
                       .++.+|.+++.....   ++++++++++||||||.+++.+++++|+++|++++++||+||+|.++.+++.  ...++..
T Consensus       154 ~~~~~~d~~~~~~~~~---~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~--~~~~~~~  228 (418)
T d1w7la_         154 SSNWQLDPMELAGKFT---SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH--QHISIAS  228 (418)
T ss_dssp             GGGEECCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGG
T ss_pred             ccCcccchhhhhcccc---ccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCC--CCCCHHH
Confidence             234456666655444   6888999999999999999999999999999999999999999999998742  2233333


Q ss_pred             HHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChh
Q 012238          289 FATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPA  368 (467)
Q Consensus       289 ~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~  368 (467)
                      +.+..++++++.|+||.+++||+|+||++   ++++++..            +.+.......+++.+.|.++..+|.+..
T Consensus       229 ~~~~~~~~i~~~S~SK~~~~pG~RvG~~v---~~~~~~~~------------l~~~~~~~~~~~~~~~q~~~~~~l~~~~  293 (418)
T d1w7la_         229 LPGMWERTLTIGSAGKTFSATGWKVGWVL---GPDHIMKH------------LRTVHQNSVFHCPTQSQAAVAESFEREQ  293 (418)
T ss_dssp             STTTGGGEEEEEEHHHHTTCGGGCCEEEE---CCHHHHHH------------HHHHHHTTTSCCCHHHHHHHHHHHHHHH
T ss_pred             ccccccccceecccCccccCCCCcccccc---cchhhhhh------------hccccccccccccchhhHHHHHHhhhcc
Confidence            44445789999999999999999999996   78888887            6666666677888899888888776543


Q ss_pred             h-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC------------------CHHHHHHHH
Q 012238          369 L-FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL------------------NKAQSDNMT  429 (467)
Q Consensus       369 ~-~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l------------------~~~~~~~ll  429 (467)
                      . .+.+.+++...++.++++|+.+.+.|. +.|    +++..|+||||+|+++                  +.+++++++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~-~~g----~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  368 (418)
T d1w7la_         294 LLFRQPSSYFVQFPQAMQRCRDHMIRSLQ-SVG----LKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMI  368 (418)
T ss_dssp             HTTTSTTSHHHHHHHHHHHHHHHHHHHHH-TTT----CEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHH
T ss_pred             ccccccccccccchhhhhhhhhhhhhhhh-hcC----CcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHH
Confidence            2 122234577889999999999999999 887    6888999999999754                  246688999


Q ss_pred             HcccEEEeCC-------------C--eEEeccCChhhHHHHHHHHHHHHH
Q 012238          430 NKWHVYMTKD-------------G--RISLAGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       430 ~~~gI~v~~g-------------g--Ris~~~~~~~~i~~~~~~l~~~l~  464 (467)
                      +++||.+.||             |  ||||+. +++++++++++|++...
T Consensus       369 ~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~-~~~~l~~a~~rl~~~~~  417 (418)
T d1w7la_         369 KNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQAMDEKLRKWKV  417 (418)
T ss_dssp             HHHCEECEEGGGGSCHHHHTTSCSEEEEECCC-CHHHHHHHHHHHHHHHC
T ss_pred             HHCCEEEEcchhhcCCCccCCCCCEEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence            9999999987             1  999987 88999999999988753

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=100.00  E-value=1.6e-48  Score=389.53  Aligned_cols=351  Identities=12%  Similarity=0.116  Sum_probs=276.6

Q ss_pred             cCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           79 ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        79 ~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      ...+.++|+|++|+|    .+|+ |+.|++++.+.++.+. ++|+  .|.++||+++|+++...+|..+++++|++  |+
T Consensus        27 ~~~g~~vi~l~~g~p----df~~-p~~v~~al~~~~~~~~-~~Y~--~g~~~Lr~aia~~~~~~~g~~~~~~~I~v--t~   96 (394)
T d1c7na_          27 PEVGNEVVPLSVADM----EFKN-PPELIEGLKKYLDETV-LGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWIIN--TA   96 (394)
T ss_dssp             TTCCTTCCCCCSSSC----SSCC-CHHHHHHHHHHHHHCC-CSSB--CCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ES
T ss_pred             HhcCCCeEEccCCCC----CCCC-CHHHHHHHHHHHhCCC-cCCC--CCCHHHHHHHHHHHHHhcCCCCCCcceEe--ec
Confidence            345568999999999    6776 8999999999887664 6784  47889999999999888888899999999  99


Q ss_pred             CchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeec-CCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q 012238          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (467)
Q Consensus       159 ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~~l~~~~~~~~~i~i~~  237 (467)
                      |+++++.++  +...+.|||.|+++.|.|..|...++..|...+.++... +..+.+|.+.++..+..  ++++++++|+
T Consensus        97 G~~~al~~~--~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~i~l~~  172 (394)
T d1c7na_          97 GVVPAVFNA--VREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD--KNNKALLFCS  172 (394)
T ss_dssp             SHHHHHHHH--HHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC--TTEEEEEEES
T ss_pred             cchhhhhhh--hccccccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhcc--ccceEEEecc
Confidence            999999998  556688999999999999999999999999999887643 34556888888887763  5788999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       238 p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                      ||||||.+++.+++++|+++|+++|++||+||+|.++.+++...... ........+++++++|+||.|+++|+|+||++
T Consensus       173 P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~-~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~  251 (394)
T d1c7na_         173 PHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVF-QSIDEQLADKTITFTAPSKTFNIAGMGMSNII  251 (394)
T ss_dssp             SBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCG-GGSCHHHHTTEEEEECSHHHHTCGGGCCEEEE
T ss_pred             cccccceeccHHHhhhhhccccccceeEeccccccccccCCccccch-hhhhcccccceeeccccccccccccccccccc
Confidence            99999999999999999999999999999999999999875322211 11111234689999999999999999999996


Q ss_pred             EecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012238          318 VVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA  397 (467)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~  397 (467)
                        ++++.+.+.            +.........+++...+.++...... .    ..+..++.++.++++++.+.+.++ 
T Consensus       252 --~~~~~i~~~------------~~~~~~~~~~~~~~~~~~~a~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~l~-  311 (394)
T d1c7na_         252 --IKNPDIRER------------FTKSRDATSGMPFTTLGYKACEICYK-E----CGKWLDGCIKVIDKNQRIVKDFFE-  311 (394)
T ss_dssp             --CCCHHHHHH------------HHHHHHHTTCCCCCHHHHHHHHHHHH-H----CHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             --ccChhhhhh------------hhhhhhhccccccccccchhhhhhhc-c----hhhhhcccccccchhhhhhhhhhh-
Confidence              566766665            44444333333333333333322111 1    134466788888888888888887 


Q ss_pred             ccCCCCCcccccCCcceEEecCC-----C-HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHH
Q 012238          398 KDKSGKDWSFILRQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIID  461 (467)
Q Consensus       398 ~~g~~~~~~~~~~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~  461 (467)
                      ..+.  .+++..|+||||+|+++     + .+++++|++++||.+.||        |  ||||+. +++++++++++|++
T Consensus       312 ~~~~--~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~-~~e~i~eal~rl~~  388 (394)
T d1c7na_         312 VNHP--EIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNK  388 (394)
T ss_dssp             HHCT--TSBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHH
T ss_pred             cccc--ceeecCCCceeEEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEeC-CHHHHHHHHHHHHH
Confidence            6542  26778899999999744     4 356788999899999997        2  999987 88999999999999


Q ss_pred             HHHhcC
Q 012238          462 SYHNVS  467 (467)
Q Consensus       462 ~l~~~~  467 (467)
                      ++++++
T Consensus       389 ~l~~Lk  394 (394)
T d1c7na_         389 ALKDLK  394 (394)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            999874

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.4e-48  Score=386.75  Aligned_cols=336  Identities=12%  Similarity=0.129  Sum_probs=283.9

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCCch
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (467)
                      +++|||++|.|    .+|+ |+.+++++.+.+.++. ++|++..|.++||+++|+++...+|..++++ +|++  |+|++
T Consensus        26 ~~~i~l~~G~P----d~~~-p~~i~~a~~~~~~~~~-~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~v--t~G~~   97 (382)
T d1u08a_          26 HQAINLSQGFP----DFDG-PRYLQERLAHHVAQGA-NQYAPMTGVQALREAIAQKTERLYGYQPDADSDITV--TAGAT   97 (382)
T ss_dssp             TTCEECCCSSC----SSCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEE--ESSHH
T ss_pred             CCCEEccCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEe--ccchH
Confidence            48899999999    5665 8899999999887654 7999999999999999999988778887776 5988  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      +++.++  +...+.+||.|++++|+|+.+...+...|+.++.++.+ +.++.+|++++++.+.   ++++++++++||||
T Consensus        98 ~al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NP  171 (382)
T d1u08a_          98 EALYAA--ITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQ-PPHFRVDWQEFAALLS---ERTRLVILNTPHNP  171 (382)
T ss_dssp             HHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECC-TTTCCCCHHHHHHHCC---TTEEEEEEESSCTT
T ss_pred             HHHHHH--HhhcccccceEEEecccccchhhhhhhccccceecccc-cccccCCHHHHhhhhc---cCccEEEECCCCcc
Confidence            999998  55567899999999999999999999999988888774 5677899999988776   67889999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||++++.+++++|+++|++++++++.|++|..+.+.......  ........+++|++.|+||.+++||+|+||++   .
T Consensus       172 tG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v---~  246 (382)
T d1u08a_         172 SATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHAS--VLAHPQLRERAVAVSSFGKTYHMTGWKVGYCV---A  246 (382)
T ss_dssp             TCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCC--GGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEE---C
T ss_pred             cccccccccchhhhhhhccccceeeeecchhhcccccccccc--ccccccccCcEEEEeeccccccCCcccchhhh---c
Confidence            999999999999999999999999999999988876422221  11122344689999999999999999999996   7


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +.+.......+++.+.|.++..++.++      .+++..+++.++++|+.+.+.++ ..| 
T Consensus       247 ~~~~~~~------------~~~~~~~~~~~~~~~~q~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~~~-~~g-  306 (382)
T d1u08a_         247 PAPISAE------------IRKVHQYLTFSVNTPAQLALADMLRAE------PEHYLALPDFYRQKRDILVNALN-ESR-  306 (382)
T ss_dssp             CHHHHHH------------HHHHHHHHTSSCCHHHHHHHHHHHHHC------THHHHTHHHHHHHHHHHHHHHTT-SSS-
T ss_pred             cchhHHH------------HHhhhcccccccccccccccccccccc------hHHHHHHHHHHHhhhhhhhhhhc-cCC-
Confidence            8888887            555555556788889999998888644      23467889999999999999998 776 


Q ss_pred             CCCcccccCCcceEEecCC------C-HHHHHHHHHcccEEEeCC--------C----eEEeccCChhhHHHHHHHHHH
Q 012238          402 GKDWSFILRQIGMFSFTGL------N-KAQSDNMTNKWHVYMTKD--------G----RISLAGLSLAKCEYLADAIID  461 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l------~-~~~~~~ll~~~gI~v~~g--------g----Ris~~~~~~~~i~~~~~~l~~  461 (467)
                         +.+..|+||||+|+++      + .++++++++++||.+.||        +    ||||+. +++++++++++|++
T Consensus       307 ---~~~~~p~gg~~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~-~~e~l~~al~RL~~  381 (382)
T d1u08a_         307 ---LEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQ  381 (382)
T ss_dssp             ---CEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHTT
T ss_pred             ---cEEecCCceEEEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHhC
Confidence               6888999999999743      3 467888999899999987        1    999987 88999999999875

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.4e-47  Score=380.42  Aligned_cols=361  Identities=12%  Similarity=0.096  Sum_probs=284.1

Q ss_pred             cCCCCCCCCcccchHHHhh--cCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHH
Q 012238           60 EGVTMAPPDPILGVSEAFK--ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE  137 (467)
Q Consensus        60 ~~~~~~~~~~i~~~~~~~~--~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~  137 (467)
                      .++....+++|.++.....  +..+.++|||++|+|    .+|+ |+.+.+++.+... + ..+|++..|.++||+++|+
T Consensus         3 ~r~~~~~~~~i~~l~~~a~~~~~~g~~vi~l~~G~p----~~~~-p~~~~~al~~~~~-~-~~~Y~~~~G~~~LR~aia~   75 (389)
T d2gb3a1           3 DRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQP----DLKT-PEVFFERIYENKP-E-VVYYSHSAGIWELREAFAS   75 (389)
T ss_dssp             HHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCC----CSCC-CTHHHHHHHHTCC-S-SCCCCCTTCCHHHHHHHHH
T ss_pred             hhhhcCCCCHHHHHHHHHHHHHHcCCCEEECCCCCC----CCCC-CHHHHHHHHhcCC-C-CCCCCCCcCCHHHHHHHHH
Confidence            3445556777777654322  234568999999999    5665 7888888877643 2 4789999999999999999


Q ss_pred             HHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChh
Q 012238          138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE  217 (467)
Q Consensus       138 ~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~  217 (467)
                      ++...+|..+++++|++  |+|+++++.++  +...+.+||.|+++.|+|+.|...++..|+.++.++..++ ++..+.+
T Consensus        76 ~~~~~~g~~~~~~~I~i--t~G~~~~l~~~--~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~  150 (389)
T d2gb3a1          76 YYKRRQRVDVKPENVLV--TNGGSEAILFS--FAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRME-EGFAIPQ  150 (389)
T ss_dssp             HHHHTSCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGG-GTSCCCT
T ss_pred             HHHHhcCCCcccceEEe--ccccccccccc--ccccccCCCeEEEeCCCCccccccccccCccccccccccc-cccchhh
Confidence            99988899999999999  99999999997  4455779999999999999999999999999999988533 3444445


Q ss_pred             hHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012238          218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (467)
Q Consensus       218 ~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  297 (467)
                      .+...+.   +++++++++|||||||.+++.+++++|+++|++||++||+||+|.++.+++....     ......++++
T Consensus       151 ~~~~~~~---~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~-----~~~~~~~~~~  222 (389)
T d2gb3a1         151 NLESFIN---ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFAS-----ALSIESDKVV  222 (389)
T ss_dssp             TGGGGCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCC-----GGGSCCTTEE
T ss_pred             hhhhhcc---cCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEecccccccccccccc-----cccccccccc
Confidence            5544443   6888999999999999999999999999999999999999999999988742111     1223456899


Q ss_pred             EEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l  377 (467)
                      ++.|+||.+++||||+||++  +.++.+...            ..... ....+++...+.++..++...      ++++
T Consensus       223 v~~s~sK~~~~~GlRiG~~~--~~~~~i~~~------------~~~~~-~~~~~~~~~~~~~~~~~l~~~------~~~~  281 (389)
T d2gb3a1         223 VIDSVSKKFSACGARVGCLI--TRNEELISH------------AMKLA-QGRLAPPLLEQIGSVGLLNLD------DSFF  281 (389)
T ss_dssp             EEEESTTTTTCGGGCCEEEE--CSCHHHHHH------------HHHHH-HHSCCCCHHHHHHHHHHHTCC------HHHH
T ss_pred             ccccccccccCcccceeeee--ccchhHHHH------------Hhhhh-hcccccccccccccccccccc------chhc
Confidence            99999999999999999996  445544443            32222 234456667777777777654      3457


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC----CHHHHHHHHHc-----ccEEEeCC---------
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----NKAQSDNMTNK-----WHVYMTKD---------  439 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l----~~~~~~~ll~~-----~gI~v~~g---------  439 (467)
                      +.+++.++++|+.+.+.|+ ++|.   ..+..|++|+|+|+++    +.+++++++++     +||.+.||         
T Consensus       282 ~~~~~~~~~~~~~~~~~L~-~~~~---~~~~~p~~g~~~~~~lp~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~  357 (389)
T d2gb3a1         282 DFVRETYRERVETVLKKLE-EHGL---KRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGL  357 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HTTC---CCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTT
T ss_pred             ccccccccccchhhhhhhh-hhcc---ccccCCCceEEEEEeCCCCCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCC
Confidence            7889999999999999999 8874   4567889999999865    34667788765     46777775         


Q ss_pred             C----eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          440 G----RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 g----Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      |    |||++. +++++++++++|.++++++
T Consensus       358 ~~~~iRis~~~-~~~~l~~a~~~L~~~lk~f  387 (389)
T d2gb3a1         358 GKKEIRIACVL-EKDLLSRAIDVLMEGLKMF  387 (389)
T ss_dssp             TSSEEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcC-CHHHHHHHHHHHHHHHHHh
Confidence            1    999986 8899999999999999864

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=100.00  E-value=4.4e-46  Score=375.72  Aligned_cols=349  Identities=13%  Similarity=0.157  Sum_probs=275.2

Q ss_pred             CCC-CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC----------CCCcCCCCcchHHHHHHHHHHHhCCCCc--cc
Q 012238           81 TDE-KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG----------ENKEYLPIEGLAAFNKVTAELLFGADNS--VL  147 (467)
Q Consensus        81 ~~~-~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~----------~~~~Y~~~~G~~~lr~aia~~l~~~~~~--~~  147 (467)
                      .+| ++|+|+++++    ..  ..+.+.+.+.+.....          ....|++..|.++||++||+|+...+|.  .+
T Consensus        33 ~np~G~i~l~~aen----~l--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~  106 (428)
T d1iaya_          33 KNPNGVIQMGLAEN----QL--CLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRF  106 (428)
T ss_dssp             SSTTSBEECSSCCC----CS--SHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCC
T ss_pred             CCCCceEEeecccC----cc--chHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCC
Confidence            344 6999999976    22  2555555554422110          1246999999999999999999876664  56


Q ss_pred             ccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CCCCeEEeeeecCCCCCCChhhHHHHHHc-
Q 012238          148 KEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-ARVPWSEYRYYDPKTVGLDFEGMIADIKA-  225 (467)
Q Consensus       148 ~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~~~~~v~~~~~~~~~~d~~~l~~~l~~-  225 (467)
                      ++++|++  |+|+++++.++  +...+.|||+|++++|+|+.|...+.. .|+++++++++.++++.+|++.++.+++. 
T Consensus       107 ~~e~Ivi--t~G~~~al~~~--~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~  182 (428)
T d1iaya_         107 DPERVVM--AGGATGANETI--IFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENA  182 (428)
T ss_dssp             CTTSCEE--EEHHHHHHHHH--HHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHH
T ss_pred             ChhhEEE--cCCHHHHHHHH--HHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEeecccccccccccccccchhhhh
Confidence            7899999  99999999998  455677999999999999999888874 58999999987777889999988776533 


Q ss_pred             --CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-------cCCeE
Q 012238          226 --APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-------RGMEL  296 (467)
Q Consensus       226 --~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~-------~~~~~  296 (467)
                        ...+++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++..  ..++..+..       ..+++
T Consensus       183 ~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~v  260 (428)
T d1iaya_         183 QKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ--FVSIAEILDEQEMTYCNKDLV  260 (428)
T ss_dssp             HHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSC--CCCHHHHHTSGGGTTSCTTSE
T ss_pred             hccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCccc--ccccccccchhhccccccceE
Confidence              3467889999999999999999999999999999999999999999999887532  223323322       34689


Q ss_pred             EEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHH
Q 012238          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAE  376 (467)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  376 (467)
                      ++++||||.|+++|+|+||++  +.++.+.+.            +.....  ....+...|.++...+.+....   +++
T Consensus       261 i~~~s~SK~~~~~GlRiG~~~--~~~~~l~~~------------~~~~~~--~~~~~~~~~~~~~a~l~~~~~~---~~~  321 (428)
T d1iaya_         261 HIVYSLSKDMGLPGFRVGIIY--SFNDDVVNC------------ARKMSS--FGLVSTQTQYFLAAMLSDEKFV---DNF  321 (428)
T ss_dssp             EEEEESTTTSSCGGGCEEEEE--ESCHHHHHH------------HHHHHT--TSCCCHHHHHHHHHHTTCHHHH---HHH
T ss_pred             EEEecCCCcccCCCccccccc--ccccchhhh------------hhhhhc--ccccccccccchhhhhhhhccc---ccc
Confidence            999999999999999999996  456666665            443332  3345666677777777765543   344


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC-----------HHHHHHHHHcccEEEeCC------
Q 012238          377 MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----------KAQSDNMTNKWHVYMTKD------  439 (467)
Q Consensus       377 l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~-----------~~~~~~ll~~~gI~v~~g------  439 (467)
                      +++.+++++++++.+.+.|+ ..|    +++..|++|||+|+++.           .++++++++++||.+.||      
T Consensus       322 ~~~~~~~l~~r~~~~~~~L~-~~g----i~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~  396 (428)
T d1iaya_         322 LRESAMRLGKRHKHFTNGLE-VVG----IKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQ  396 (428)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HTT----CCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS
T ss_pred             ccccccccchhHHHHHHHHH-hCC----CEEecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCC
Confidence            77888999999999999998 877    57889999999998652           245788999899999987      


Q ss_pred             --C--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          440 --G--RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       440 --g--Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                        |  ||||+..++++++.++++|++++..
T Consensus       397 ~~g~~Ris~a~~~~~~l~~al~Rl~~~l~~  426 (428)
T d1iaya_         397 EPGWFRVCFANMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             SSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence              2  9999876778899999999999864

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6e-46  Score=366.56  Aligned_cols=343  Identities=15%  Similarity=0.082  Sum_probs=269.9

Q ss_pred             cEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHH
Q 012238           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (467)
Q Consensus        85 ~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al  164 (467)
                      +|+|++|++    ++|+ |+.+++++.+.+..+. .+|++..| +++|+++++++...+|..+++++|++  |+|+++++
T Consensus         1 ~~~~~~~~~----df~~-p~~i~eal~~~~~~~~-~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~i--t~G~~~~l   71 (361)
T d1d2fa_           1 LLPFTISDM----DFAT-APCIIEALNQRLMHGV-FGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVY--GPSVIYMV   71 (361)
T ss_dssp             CEECCSSSC----SSCC-CHHHHHHHHHHHTTCC-CCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEE--ESCHHHHH
T ss_pred             CcCcCCCCC----CCCC-CHHHHHHHHHHHhCCC-CCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEE--eCCHHHHH
Confidence            589999999    6776 8899999999887664 68988888 67999999999888899999999999  99999999


Q ss_pred             HHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecC-CCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCC
Q 012238          165 RLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP-KTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG  243 (467)
Q Consensus       165 ~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG  243 (467)
                      ..+  +...+.|||+|++++|+|+.|..+++..|.+++.++.+.. +++.+|++.+++.+.+  .+++++++++||||||
T Consensus        72 ~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~--~~~~~i~l~~p~NPTG  147 (361)
T d1d2fa_          72 SEL--IRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK--PECKIMLLCSPQNPTG  147 (361)
T ss_dssp             HHH--HHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS--TTEEEEEEESSCTTTC
T ss_pred             HHH--hhhccccccccccccccccchhHHHHhhcceEEeecccccccccccccccchhhccc--CCceeEEecccccccc
Confidence            987  4445679999999999999999999999999999987643 4566999999999975  6788999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCH
Q 012238          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (467)
Q Consensus       244 ~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~  323 (467)
                      .+++.+++++|+++|+++|++||+||+|.++.+++....  ++  .....++++++.|+||.++++|+|+||++  +.++
T Consensus       148 ~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~--~~--~~~~~~~~v~~~s~SK~~~~~g~R~g~~~--~~~~  221 (361)
T d1d2fa_         148 KVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHI--PW--SNVARGDWALLTSGSKSFNIPALTGAYGI--IENS  221 (361)
T ss_dssp             CCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCC--CG--GGTCCSSEEEEECSHHHHTCGGGCCEEEE--ECSH
T ss_pred             cccchhhhhhhhhhhhhhheeeeeccccccccccccccc--cc--ccccccccccccccccccccccccceeee--cchh
Confidence            999999999999999999999999999999988642211  11  11234689999999999999999999996  3554


Q ss_pred             HHHhhhhhhhHHHHHHHHHhhccCc-cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238          324 DLAARCCEVAVIQVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  402 (467)
Q Consensus       324 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~  402 (467)
                      .....        .   +....... ..+++...+.++...+...      .+..++.+..++++++.+.+.+. .... 
T Consensus       222 ~~~~~--------~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~r~~~~~~~~~-~~~~-  282 (361)
T d1d2fa_         222 SSRDA--------Y---LSALKGRDGLSSPSVLALTAHIAAYQQG------APWLDALRIYLKDNLTYIADKMN-AAFP-  282 (361)
T ss_dssp             HHHHH--------H---HHHHHTTSCCCSCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHCS-
T ss_pred             HHHHH--------H---hhhcccccccccchhhhHHHHHHHhhcc------chhhhcccccchhhHHHHHHHhh-hhcc-
Confidence            44443        2   22222222 2234444433332222211      23356777888888888887776 4321 


Q ss_pred             CCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCC------C----eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          403 KDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD------G----RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       403 ~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g------g----Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                       ++.+..|+||+|+|+++     +. +++.++++++||.+.||      |    |||++. +++++++++++|.++++++
T Consensus       283 -~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~-~~e~l~~al~rl~~~l~~l  360 (361)
T d1d2fa_         283 -ELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINAIRAV  360 (361)
T ss_dssp             -SCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             -cccccccCceeEEEEEccCCCCCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcC-CHHHHHHHHHHHHHHHHhc
Confidence             26778899999999754     43 56778899899999987      1    999986 8899999999999999987


Q ss_pred             C
Q 012238          467 S  467 (467)
Q Consensus       467 ~  467 (467)
                      +
T Consensus       361 r  361 (361)
T d1d2fa_         361 R  361 (361)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=100.00  E-value=2.8e-46  Score=377.48  Aligned_cols=350  Identities=17%  Similarity=0.187  Sum_probs=274.0

Q ss_pred             CCC-CcEEecCcccCCCCCCCCchHHHHHHHHHHHh------c-----CCCCcCCCCcchHHHHHHHHHHHhCCCC--cc
Q 012238           81 TDE-KKLNLGVGAYRTEELQPYVLDVVKKAENLMLE------R-----GENKEYLPIEGLAAFNKVTAELLFGADN--SV  146 (467)
Q Consensus        81 ~~~-~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~------~-----~~~~~Y~~~~G~~~lr~aia~~l~~~~~--~~  146 (467)
                      .+| ++|+|+++++    ..  ..+.+.+.+.+...      .     .....|.+..|.++||+++|+++...+|  ..
T Consensus        33 ~np~G~i~l~~~en----~l--~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~  106 (431)
T d1m7ya_          33 HNTNGIIQMGLAEN----QL--CFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVT  106 (431)
T ss_dssp             SCTTSBEECSSCCC----CS--CHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSC
T ss_pred             CCCCcEEEeecccc----cc--cHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCC
Confidence            344 5999999876    32  25556555543210      0     0114699999999999999999986655  45


Q ss_pred             cccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CCCCeEEeeeecCCCCCCChhhHHHHHHc
Q 012238          147 LKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-ARVPWSEYRYYDPKTVGLDFEGMIADIKA  225 (467)
Q Consensus       147 ~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~~~~~v~~~~~~~~~~d~~~l~~~l~~  225 (467)
                      +++++|++  |+|+++++.++  +...+.|||+|++++|+|+.+...++. .|++++++++++++++.+|++.+++.+.+
T Consensus       107 ~~pe~I~i--t~G~~~al~~~--~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~  182 (431)
T d1m7ya_         107 FDPNHLVL--TAGATSANETF--IFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQE  182 (431)
T ss_dssp             CCGGGEEE--EEHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHH
T ss_pred             CCcceEEE--CCCHHHHHHHH--HHHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccccccchhcccccHHHhhhhhhh
Confidence            67899999  99999999998  445577999999999999999988874 68899999997777889999999988764


Q ss_pred             ---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh---------cC
Q 012238          226 ---APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT---------RG  293 (467)
Q Consensus       226 ---~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~---------~~  293 (467)
                         ...++++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++.  ...++..+..         ..
T Consensus       183 ~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~  260 (431)
T d1m7ya_         183 AEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP--SFISVMEVLKDRNCDENSEVW  260 (431)
T ss_dssp             HHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS--CCCCHHHHTTTTTCSSSSSGG
T ss_pred             hhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCC--CCCCHHHHhhhcccccccccC
Confidence               345788999999999999999999999999999999999999999999988742  2223323322         12


Q ss_pred             CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHH
Q 012238          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEW  373 (467)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~  373 (467)
                      +++++++||||.|+++|+|+||++   ++++.+..        .   +... .. ...++...+.++...+.+....   
T Consensus       261 ~~vi~~~s~SK~~~~~G~RiG~~~---~~~~~i~~--------~---~~~~-~~-~~~~~~~~~~~~~a~l~~~~~~---  321 (431)
T d1m7ya_         261 QRVHVVYSLSKDLGLPGFRVGAIY---SNDDMVVA--------A---ATKM-SS-FGLVSSQTQHLLSAMLSDKKLT---  321 (431)
T ss_dssp             GGEEEEEESSSSSCCGGGCEEEEE---ESCHHHHH--------H---HHHH-GG-GSCCCHHHHHHHHHHHHCHHHH---
T ss_pred             ceEEEEecCcccccCCCCccceec---cchhhhHH--------H---HHHH-hc-cccccccccchhhhhhccchhh---
Confidence            479999999999999999999996   55555443        1   2222 22 3455556666666666655443   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC-----------HHHHHHHHHcccEEEeCC---
Q 012238          374 KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----------KAQSDNMTNKWHVYMTKD---  439 (467)
Q Consensus       374 ~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~-----------~~~~~~ll~~~gI~v~~g---  439 (467)
                      .+++++.+++++++++.+.+.|+ +.|    +++.+|+||+|+|+++.           .++++++++++||.+.||   
T Consensus       322 ~~~~~~~~~~~~~~~~~l~~~L~-~~g----i~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F  396 (431)
T d1m7ya_         322 KNYIAENHKRLKQRQKKLVSGLQ-KSG----ISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSC  396 (431)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-TTT----CEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGG
T ss_pred             hhhhhhhhhhhhhhhhhhhhhhh-cCC----cEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEecccc
Confidence            34577889999999999999999 877    68889999999998651           256888999899999997   


Q ss_pred             -----C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          440 -----G--RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 -----g--Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                           |  ||+|+..+++++++++++|++++++.
T Consensus       397 ~~~~~~~~Ri~~a~~~e~~l~~al~rL~~~l~~~  430 (431)
T d1m7ya_         397 HCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEY  430 (431)
T ss_dssp             TCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHHh
Confidence                 2  99998767789999999999999874

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.4e-46  Score=370.36  Aligned_cols=330  Identities=18%  Similarity=0.141  Sum_probs=276.3

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (467)
                      +.|||++|.|    ++|+ |+.+++++.+.+..  ..+|++..|.++||++||+++.-      ++++|++  |+|++++
T Consensus        26 ~~I~ls~g~p----~~~~-p~~i~~al~~~l~~--~~~Y~~~~G~~elr~aiA~~~~~------~~~~Iii--t~G~~~a   90 (368)
T d1v2da_          26 GAVNLGQGFP----SNPP-PPFLLEAVRRALGR--QDQYAPPAGLPALREALAEEFAV------EPESVVV--TSGATEA   90 (368)
T ss_dssp             TCEECCCCSC----SSCC-CHHHHHHHHHHTTT--SCSCCCTTCCHHHHHHHHHHHTS------CGGGEEE--ESSHHHH
T ss_pred             CCEEecCCCC----CCCC-CHHHHHHHHHHhhc--ccCCCCCcCCHHHHHHHHhhccc------CCcceee--ccchHHH
Confidence            6899999998    5565 88999999998754  37899999999999999999753      3889999  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeec-CCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (467)
Q Consensus       164 l~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT  242 (467)
                      ++++  +...+.+||.|+++.|+|..+...++..|.+++.++++. .+++.+|++.+++.++   +.++++++++|||||
T Consensus        91 l~~~--~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~~~~p~NPt  165 (368)
T d1v2da_          91 LYVL--LQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT---PRTRALLLNTPMNPT  165 (368)
T ss_dssp             HHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC---TTEEEEEEESSCTTT
T ss_pred             HHHH--hhccccccccccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhhc---cCceEEEEcCCCCcc
Confidence            9998  455677999999999999999999999999999888753 3467899999999887   577888999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (467)
Q Consensus       243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (467)
                      |.+++.+++++|+++|++||+++|+||+|..+...... ..    ......++++++.|+||.++++|+|+||++   .+
T Consensus       166 G~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~---~~  237 (368)
T d1v2da_         166 GLVFGERELEAIARLARAHDLFLISDEVYDELYYGERP-RR----LREFAPERTFTVGSAGKRLEATGYRVGWIV---GP  237 (368)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC-CC----HHHHCTTTEEEEEEHHHHTTCGGGCCEEEE---CC
T ss_pred             cccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccc-cc----cccccccccceeeccccccccccccccccc---cc
Confidence            99999999999999999999999999999877765321 11    122445678899999999999999999995   77


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238          323 SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  402 (467)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~  402 (467)
                      +++++.            +.+.......+++...|.++..++.....    .++++..++.++++++++.+.|+ ++|  
T Consensus       238 ~~~~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~l~-~~g--  298 (368)
T d1v2da_         238 KEFMPR------------LAGMRQWTSFSAPTPLQAGVAEALKLARR----EGFYEALREGYRRRRDLLAGGLR-AMG--  298 (368)
T ss_dssp             TTTHHH------------HHHHHHHHTSSCCHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHH-HTT--
T ss_pred             ccccch------------hhhhhhccccccccccccccccccccccc----hhhHHHHHHHHHHhhhhhhhhHH-hcC--
Confidence            787776            55555555667888888887777654332    34578889999999999999999 887  


Q ss_pred             CCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCC----------C--eEEeccCChhhHHHHHHHHHHHH
Q 012238          403 KDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKD----------G--RISLAGLSLAKCEYLADAIIDSY  463 (467)
Q Consensus       403 ~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~g----------g--Ris~~~~~~~~i~~~~~~l~~~l  463 (467)
                        +++..|++|+|+|++++.....++++++||.+.||          |  |||++. +++++++++++|++++
T Consensus       299 --~~~~~p~g~~~~~~~l~~~~~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~-~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         299 --LRVYVPEGTYFLMAELPGWDAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVV  368 (368)
T ss_dssp             --CCEECCSBSSEEEEECTTCCHHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHHHC
T ss_pred             --cEEecCCceeEEEEeCCccHHHHHHHhCCEEEEechhhCCCCCCCCEEEEEecC-CHHHHHHHHHHHHHhC
Confidence              68889999999999886555667788899999886          2  999987 8899999999999874

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.6e-46  Score=375.72  Aligned_cols=363  Identities=14%  Similarity=0.157  Sum_probs=282.9

Q ss_pred             CCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCCC
Q 012238           66 PPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGAD  143 (467)
Q Consensus        66 ~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~  143 (467)
                      .++.|.++.+   ...++++|||+.|.| |...+  +.+.+.++++++++..  ...+|++..|.++||+++|+++...+
T Consensus        24 ~~s~ir~~~~---~~~~~~~I~l~~G~P-d~~~~--P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~   97 (420)
T d1vp4a_          24 KSSIIREILK---FAADKDAISFGGGVP-DPETF--PRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMY   97 (420)
T ss_dssp             CCCCHHHHTT---TTTSTTCEECCCCSC-CGGGS--CHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHH---HhCCCCcEecCCcCC-CCccC--CHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHh
Confidence            4455655433   234578999999998 32222  2566777777766432  23679999999999999999998777


Q ss_pred             Ccc-cccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHH
Q 012238          144 NSV-LKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD  222 (467)
Q Consensus       144 ~~~-~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~  222 (467)
                      |.. +++++|++  |+|+++++.++  +...+.|||.|++++|+|+.|...++..|++++.+|.++   .++|++.+...
T Consensus        98 g~~~~~~~~I~i--t~G~~~al~~~--~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~---~~~~~~~l~~~  170 (420)
T d1vp4a_          98 GITGLDEDNLIF--TVGSQQALDLI--GKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLED---DGMDLNVLERK  170 (420)
T ss_dssp             CCCSCCGGGEEE--EEHHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET---TEECHHHHHHH
T ss_pred             CCCCCCHHHeEe--ccchhhhHHHH--HHhhhccccccccccccccchhHHHHHHhhhcccccccc---cccccchhhhh
Confidence            764 78999999  99999999998  455577999999999999999999999999999999863   35788887765


Q ss_pred             HHc------CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012238          223 IKA------APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (467)
Q Consensus       223 l~~------~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~  296 (467)
                      +..      ....+.++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++....  +. ......+++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~--~~-~~~~~~~~~  247 (420)
T d1vp4a_         171 LSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVD--PI-FKIGGPERV  247 (420)
T ss_dssp             HHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCC--CH-HHHHCTTTE
T ss_pred             hhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccc--cc-cccccccce
Confidence            432      124566888999999999999999999999999999999999999999998642211  11 223455789


Q ss_pred             EEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHH
Q 012238          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAE  376 (467)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  376 (467)
                      ++++|+||.++ +|+|+||++   ++++++++            +.+.......+++...|.+++.++.+...    .++
T Consensus       248 i~~~s~sk~~~-~G~RiG~~~---~~~~~i~~------------l~~~~~~~~~~~~~~~q~~~a~~l~~~~~----~~~  307 (420)
T d1vp4a_         248 VLLNTFSKVLA-PGLRIGMVA---GSKEFIRK------------IVQAKQSADLCSPAITHRLAARYLERYDL----LEQ  307 (420)
T ss_dssp             EEEEESTTTTC-GGGCEEEEE---CCHHHHHH------------HHHHHHHHHSSCCHHHHHHHHHHHHHSCH----HHH
T ss_pred             eEEeccccccc-ccccccccc---ccchhhhh------------hhhhhhhccccCchhhhhhhhhhcccccc----ccc
Confidence            99999999886 999999995   88888888            66555555667888888888877765543    455


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccC--CCCCcccccCCcceEEecCC----CHHHHHHHHHcccEEEeCC----------C
Q 012238          377 MEMMAGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFSFTGL----NKAQSDNMTNKWHVYMTKD----------G  440 (467)
Q Consensus       377 l~~~~~~~~~~r~~l~~~l~~~~g--~~~~~~~~~~~~g~f~~~~l----~~~~~~~ll~~~gI~v~~g----------g  440 (467)
                      +++.++.++++++.+.+.|+ +..  ++ ++++..|+||||+|+.+    +...+.++++++||.+.||          +
T Consensus       308 ~~~~~~~~~~~~~~~~~~L~-~~~~~~~-g~~~~~p~gg~f~~~~~~~~~d~~~~~~~l~~~gV~v~PG~~F~~~~~~~~  385 (420)
T d1vp4a_         308 LKPTIELYRRKRTVMLNALE-EYFSDIP-GVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSP  385 (420)
T ss_dssp             THHHHHHHHHHHHHHHHHHH-HHSTTST-TCEECCCSBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTTCCCCS
T ss_pred             chhHHHHhhhhcccchhhhh-hhhccCC-CcEEecCCceEEEEEECCCCCCHHHHHHHHHHCCeEEEechhhCCCCCCCC
Confidence            67788889999999888887 541  12 26788999999999855    3333334455679999987          1


Q ss_pred             --eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          441 --RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       441 --Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                        ||||+..+++++++++++|++++++.
T Consensus       386 ~iRls~~~~~~e~l~~a~~rL~~~l~~~  413 (420)
T d1vp4a_         386 SMRLSFCLPPDEKIVEGIKRLREVVLEY  413 (420)
T ss_dssp             EEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCcCCHHHHHHHHHHHHHHHHHh
Confidence              99998778899999999999998753

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=100.00  E-value=2.7e-45  Score=367.21  Aligned_cols=364  Identities=13%  Similarity=0.124  Sum_probs=278.5

Q ss_pred             CCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCCCC
Q 012238           67 PDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADN  144 (467)
Q Consensus        67 ~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~  144 (467)
                      .+.|.++.+..   ..+++|||+.|.| +...  .+.+.+++++.+++...  ...+|++..|.++||+++|+++...+|
T Consensus        16 ~s~ire~~~~~---~~~~~i~l~~G~P-~~~~--~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g   89 (403)
T d1wsta1          16 ASEVRELLKLV---ETSDVISLAGGLP-APET--FPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYD   89 (403)
T ss_dssp             CHHHHHHHHHH---TSSSCEECCCCCC-CGGG--SCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHh---CCCCcEECCCCCC-Cccc--cCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhC
Confidence            34454444332   3468999999988 2222  23577888888876431  126799999999999999999988888


Q ss_pred             cccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhh-HHHHH
Q 012238          145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG-MIADI  223 (467)
Q Consensus       145 ~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~-l~~~l  223 (467)
                      ..+++++|++  |+|+++++.++  +...+.+||.|++++|+|..|...++.+|++++.++.+++.....+... .++..
T Consensus        90 ~~~~~~~I~i--t~G~~~al~~~--~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~  165 (403)
T d1wsta1          90 IPMSKVEIMT--VAGSQQALDLI--GRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEELR  165 (403)
T ss_dssp             CCCTTCEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHHH
T ss_pred             CCCChHHeee--cccchHHHHHH--HHHHhhcCCccccCCCcchhhhHHHhhccccceeEeecccCCccccccccchhhh
Confidence            8889999999  99999999998  4445779999999999999999999999999999998644322222222 22233


Q ss_pred             HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCc
Q 012238          224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (467)
Q Consensus       224 ~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S  303 (467)
                      ........++++++||||||.+++.+++++|+++|++||++||+||+|.++.++...  ..++ ...+..+++++++|+|
T Consensus       166 ~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~--~~~~-~~~~~~~~~i~~~S~S  242 (403)
T d1wsta1         166 KQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEP--TPPI-KHFDDYGRVIYLGTFS  242 (403)
T ss_dssp             HTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCC--CCCG-GGGCSSSCEEEEEEST
T ss_pred             hccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCC--CCcc-cccCCCCcEEEEcccc
Confidence            333466778899999999999999999999999999999999999999999887422  1122 1223456899999999


Q ss_pred             cCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012238          304 KNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR  383 (467)
Q Consensus       304 K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~  383 (467)
                      |.++ +|+|+||++   +++++++.            +.........+++...|.+....+.....    .+.+++.++.
T Consensus       243 K~~~-~G~RiG~~i---~~~~~i~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  302 (403)
T d1wsta1         243 KILA-PGFRIGWVA---AHPHLIRK------------MEIAKQSIDLCTNTFGQAIAWKYVENGYL----DEHIPKIIEF  302 (403)
T ss_dssp             TTTC-GGGCCEEEE---ECHHHHHH------------HHHHHHHHHSSCCHHHHHHHHHHHHTTHH----HHHHHHHHHH
T ss_pred             ceec-Ccccccccc---cchHHHHH------------HHHHHhhhccccccchhhhHHhhhhcccc----chhHHHHHHH
Confidence            9996 999999996   78888877            55544445567777777777766665433    4557888899


Q ss_pred             HHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC----CHHHHHHHHHcccEEEeCC----------C--eEEeccC
Q 012238          384 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----NKAQSDNMTNKWHVYMTKD----------G--RISLAGL  447 (467)
Q Consensus       384 ~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l----~~~~~~~ll~~~gI~v~~g----------g--Ris~~~~  447 (467)
                      ++++++.+.+.|. +.. +..+.+..|+||+|+|+.+    +.+.+.+++.++||.+.||          +  ||+|+..
T Consensus       303 ~~~~~~~~~~~L~-~~~-~~~~~~~~p~gg~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~  380 (403)
T d1wsta1         303 YKPRRDAMLEALE-EYM-PEGVEWTKPEGGMFVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYV  380 (403)
T ss_dssp             HHHHHHHHHHHHH-HHC-CTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSS
T ss_pred             HHHHHHHHHHHHH-hhc-cCCeEEeCCCceeEEEEECCCCCCHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecCC
Confidence            9999999999998 642 1236778899999999854    3444444455569999987          1  9999877


Q ss_pred             ChhhHHHHHHHHHHHHHh
Q 012238          448 SLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       448 ~~~~i~~~~~~l~~~l~~  465 (467)
                      +++++++++++|++++++
T Consensus       381 ~~~~l~~al~rl~~~l~~  398 (403)
T d1wsta1         381 PEETIREGVRRLAETIKE  398 (403)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            889999999999988875

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=4.8e-41  Score=330.54  Aligned_cols=338  Identities=14%  Similarity=0.117  Sum_probs=259.0

Q ss_pred             CCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCC
Q 012238           65 APPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADN  144 (467)
Q Consensus        65 ~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~  144 (467)
                      ++++.+.+.+.++...+ .++||||.|++    .+++ ++.+++++.+.+..  ...| |..|..+||+++|+++.    
T Consensus         5 ~hgg~~~~~~~~~g~~p-~~~idls~~~n----p~~~-p~~~~~a~~~~~~~--~~~Y-p~~~~~~Lr~aia~~~~----   71 (355)
T d1lc5a_           5 AHGGNIREPATVLGISP-DQLLDFSANIN----PLGM-PVSVKRALIDNLDC--IERY-PDADYFHLHQALARHHQ----   71 (355)
T ss_dssp             SSSCCCHHHHHHHTSCG-GGSEECSSCCC----TTCC-CHHHHHHHHHTGGG--GGSC-CCTTCHHHHHHHHHHHT----
T ss_pred             CCCCHHHHHHHHhCCCh-hheEEccCCCC----CCCC-CHHHHHHHHHHHHH--hccC-CCCChHHHHHHHHHHhC----
Confidence            46667777777776433 37999999976    4554 78889999887654  2567 66778999999999974    


Q ss_pred             cccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHH
Q 012238          145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK  224 (467)
Q Consensus       145 ~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~  224 (467)
                        +++++|++  ++|+++++.++   +..+ .|+.++++.|+|..|.......++.++.+++..++++.++ +.+++.+.
T Consensus        72 --v~~~~I~~--~~g~~~~~~~~---~~~~-~~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~  142 (355)
T d1lc5a_          72 --VPASWILA--GNGETESIFTV---ASGL-KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALT  142 (355)
T ss_dssp             --SCGGGEEE--ESSHHHHHHHH---HHHH-CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCC
T ss_pred             --CCHHHEEe--cccHHHHHHHH---Hhhh-ccccccccCCccceeccccccccccceeeeeeccCCccce-eeeeeccc
Confidence              23789998  99999988875   3233 5677788899999999999999999999998766566555 44555554


Q ss_pred             cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCcc
Q 012238          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (467)
Q Consensus       225 ~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  304 (467)
                         .++++++++|||||||.+++.+++++|+++|++|++++|+||+|.++.+...  ...   ......+++++++||||
T Consensus       143 ---~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~--~~~---~~~~~~~~~i~~~S~SK  214 (355)
T d1lc5a_         143 ---PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET--GFI---PALKDNPHIWVLRSLTK  214 (355)
T ss_dssp             ---TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC--CSG---GGCTTCTTEEEEEESTT
T ss_pred             ---cccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeecc--ccc---ccccccccceeeccccc
Confidence               6778889999999999999999999999999999999999999999886532  111   22345578999999999


Q ss_pred             CcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012238          305 NLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  384 (467)
Q Consensus       305 ~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~  384 (467)
                      .||+||+|+||++  ++++...+.            +++...  ....+.+++.++..+|++..       .+.+.++.+
T Consensus       215 ~~~l~GlR~G~~i--~~~~~~~~~------------~~~~~~--~~~~~~~~~~~a~~~l~~~~-------~~~~~~~~~  271 (355)
T d1lc5a_         215 FYAIPGLRLGYLV--NSDDAAMAR------------MRRQQM--PWSVNALAALAGEVALQDSA-------WQQATWHWL  271 (355)
T ss_dssp             TTTCTTTCCEEEE--CCCHHHHHH------------HHHHSC--TTCSCHHHHHHHHHGGGCHH-------HHHHHHHHH
T ss_pred             cccccccccccee--ccchhhhHH------------HHhhcC--Cccccccccccccccccccc-------hhHHHHHHH
Confidence            9999999999996  344444443            444332  34577788889888888753       356778888


Q ss_pred             HHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC---HHHHHHHHHcccEEEeCCC----------eEEeccCChhh
Q 012238          385 KNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAK  451 (467)
Q Consensus       385 ~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~  451 (467)
                      +++++++.+.|. +++.   +.+ .|.+|+|+|+++.   .+++++++ ++||.++++.          |||++  ++++
T Consensus       272 ~~~~~~~~~~l~-~~~~---~~~-~p~~~~f~~~~~~~~~~~~~~~L~-~~gv~vr~~~~f~~~~~~~iRis~~--~~~e  343 (355)
T d1lc5a_         272 REEGARFYQALC-QLPL---LTV-YPGRANYLLLRCEREDIDLQRRLL-TQRILIRSCANYPGLDSRYYRVAIR--SAAQ  343 (355)
T ss_dssp             HHHHHHHHHHHH-TSTT---EEE-CCCSSSEEEEEESCTTCCHHHHHH-TTTEECEECTTSTTCCTTEEEEECC--CHHH
T ss_pred             HHHHHHHHHHHh-hcCC---cEE-CCCCCEEEEEECCCCHHHHHHHHH-HCCcEEEeCccCCCCCCCEEEEEeC--CHHH
Confidence            999999999999 7642   554 4567788998652   34566665 4699998862          99987  5789


Q ss_pred             HHHHHHHHHHHH
Q 012238          452 CEYLADAIIDSY  463 (467)
Q Consensus       452 i~~~~~~l~~~l  463 (467)
                      +++++++|++++
T Consensus       344 ~~~li~aL~~il  355 (355)
T d1lc5a_         344 NERLLAALRNVL  355 (355)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999999874

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.6e-40  Score=322.39  Aligned_cols=310  Identities=15%  Similarity=0.137  Sum_probs=241.1

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      .+.++|.|++|++    .+|+ |+.+.+++.+.+..+. ..|.|..|.++||+++|+++... +  +++++|++  |+|+
T Consensus        17 ~~~d~~~l~~~en----p~~~-p~~i~~~~~~~~~~~~-~~~yp~~g~~~Lr~aia~~~~~~-~--v~~d~I~i--t~G~   85 (334)
T d2f8ja1          17 EKRDKTYLALNEN----PFPF-PEDLVDEVFRRLNSDA-LRIYYDSPDEELIEKILSYLDTD-F--LSKNNVSV--GNGA   85 (334)
T ss_dssp             CCCCSEECSSCCC----SSCC-CHHHHHHHHHHCCTTG-GGSCCCSSCHHHHHHHHHHHTCS-S--CCGGGEEE--EEHH
T ss_pred             cCCCceEEECCCC----CCCC-CHHHHHHHHHHhhcch-hcCCCCCCcHHHHHHHHHHhccc-C--CCcceEEe--cCcc
Confidence            4468999999976    5665 7888888888876554 55668899999999999998654 3  56889999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      +++++++   +   .+||+|++++|+|..|...++.+|++++.+|++++.  ..+ +       ....++++++++||||
T Consensus        86 ~~~l~~l---~---~~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~--~~~-~-------~~~~~~~~l~l~nP~N  149 (334)
T d2f8ja1          86 DEIIYVM---M---LMFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDL--RIP-E-------VNVGEGDVVFIPNPNN  149 (334)
T ss_dssp             HHHHHHH---H---HHSSEEEECSSCCHHHHHHHHHHTCCEEECCCCTTS--CCC-C-------CCCCTTEEEEEESSCT
T ss_pred             hhHHHHH---h---hhccccccccccccccccchhccCCccccccccccc--ccc-c-------cccccceEEEeccccc
Confidence            9999885   2   246999999999999999999999999999985432  221 1       1125678899999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      |||.+++.+++.++    .++++++|+||+|.++.+..   ...    .....+++++++||||.++++|+|+||++   
T Consensus       150 PtG~~~s~~~l~~~----~~~~~~ii~Dd~~~~~~~~~---~~~----~~~~~~~~i~~~S~SK~~~~~G~R~G~~~---  215 (334)
T d2f8ja1         150 PTGHVFEREEIERI----LKTGAFVALDEAYYEFHGES---YVD----FLKKYENLAVIRTFSKAFSLAAQRVGYVV---  215 (334)
T ss_dssp             TTCCCCCHHHHHHH----HTTTCEEEEECTTGGGTCCC---CGG----GGGTCSSEEEEEESTTTSSCTTTCEEEEE---
T ss_pred             ccceeecHHHhhcc----ccceeEEeecccchhhcccc---ccc----ccccCceEEEEecCccccchhhhhhhhcc---
Confidence            99999998877654    56899999999998776542   111    12355799999999999999999999996   


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      ++++++++            +.....  ..+.+..+|.++...+.+.       ++++..++.++++|+.+.+.|+ ++|
T Consensus       216 ~~~~~i~~------------l~~~~~--~~~~s~~~~~~a~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~-~~g  273 (334)
T d2f8ja1         216 ASEKFIDA------------YNRVRL--PFNVSYVSQMFAKVALDHR-------EIFEERTKFIVEERERMKSALR-EMG  273 (334)
T ss_dssp             ECHHHHHH------------HHHHSC--TTCSCHHHHHHHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHH-HHT
T ss_pred             cchHHHHH------------HHHhhc--ccccchhhhhhcccccccc-------cchhhHHHHHHHHHHHHHHHHH-HCC
Confidence            78888887            665544  3457777888887777654       3366778899999999999999 887


Q ss_pred             CCCCcccccCCcceEEecCCC---HH-HHHHHHHcccEEEeCCC---eEEeccCChhhHHHHHHHHHH
Q 012238          401 SGKDWSFILRQIGMFSFTGLN---KA-QSDNMTNKWHVYMTKDG---RISLAGLSLAKCEYLADAIID  461 (467)
Q Consensus       401 ~~~~~~~~~~~~g~f~~~~l~---~~-~~~~ll~~~gI~v~~gg---Ris~~~~~~~~i~~~~~~l~~  461 (467)
                          +++.+++|+ |+|+.+.   .+ +.+.|+ ++||.++++.   |||++  +.+++++++++|++
T Consensus       274 ----~~~~~~~g~-f~~~~~~~~~~~~~~~~L~-~~GI~vr~~~~~vRis~g--~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         274 ----YRITDSRGN-FVFVFMEKEEKERLLEHLR-TKNVAVRSFREGVRITIG--KREENDMILRELEV  333 (334)
T ss_dssp             ----CEECCCCSS-EEEEECCHHHHHHHHHHHH-HTTEECEEETTEEEEECC--CHHHHHHHHHHHHH
T ss_pred             ----CeECCCCce-EEEEECCCCCHHHHHHHHH-HCCCEECCCCCeEEEEcC--CHHHHHHHHHHHhc
Confidence                577888776 6676552   23 345554 5699997653   99997  46788999888875

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-38  Score=311.25  Aligned_cols=313  Identities=16%  Similarity=0.198  Sum_probs=237.9

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      ...|.|+.+++    ..++ ++.+.        .....+| |..+..+||+++|+++.      +++++|++  |+|+++
T Consensus        27 ~~~i~L~~ne~----p~~~-~~~~~--------~~~l~rY-Pd~~~~~Lr~~ia~~~g------v~pe~I~i--t~Gs~e   84 (354)
T d1fg7a_          27 NGDVWLNANEY----PTAV-EFQLT--------QQTLNRY-PECQPKAVIENYAQYAG------VKPEQVLV--SRGADE   84 (354)
T ss_dssp             TCSEECSSCCC----SSCC-CCCCC--------CCCTTSC-CCSSCHHHHHHHHHHHT------SCGGGEEE--ESHHHH
T ss_pred             CCCEEeeCCCC----CCCC-CHHHH--------HHHHhcC-CCCcHHHHHHHHHHHhC------CChHHeee--ccCchH
Confidence            46788987764    2222 22221        1223668 66677899999999964      34899999  999999


Q ss_pred             HHHHHHHHHHHhCCCC-EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238          163 SLRLAAALIERYFPGA-KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (467)
Q Consensus       163 al~l~~~~l~~~~~gd-~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP  241 (467)
                      ++.++  +...+.||| +|+++.|+|..|...++..|.+++.++.  ++++.+|++.++..+    .+++++++++||||
T Consensus        85 ai~~~--~~~~~~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~--~~~~~~d~~~l~~~~----~~~~~v~~~~pnNP  156 (354)
T d1fg7a_          85 GIELL--IRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPT--LDNWQLDLQGISDKL----DGVKVVYVCSPNNP  156 (354)
T ss_dssp             HHHHH--HHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCC--CTTSCCCHHHHHTSC----TTEEEEEEESSCTT
T ss_pred             HHHHH--HHHhhccccccccccccccccchhhhhccCceeecccc--ccccccchhhhhhcc----cccceeeccCCCcc
Confidence            99998  444577998 6889999999999999999999999888  457889999887755    46889999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (467)
Q Consensus       242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (467)
                      ||.+++.++++.+.+.++ ++.++|+||+|.+|.++.   ...   ......+++++++||||.||++|+|+||++   +
T Consensus       157 tG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~---~~~---~~~~~~~~~iv~~S~SK~~~laGlRiGy~i---~  226 (354)
T d1fg7a_         157 TGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQA---SLA---GWLAEYPHLAILRTLSKAFALAGLRCGFTL---A  226 (354)
T ss_dssp             TCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGG---CSG---GGTTTCTTEEEEEESSSTTCCGGGCCEEEE---E
T ss_pred             ceeEeeeccccccccccc-ccccccccccchhhcccc---ccc---hhhcccccceEEeCCccccCCCcccccccc---c
Confidence            999999999999888776 677888899998887542   111   223456789999999999999999999996   8


Q ss_pred             CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238          322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~  401 (467)
                      ++++++.            +.+...+.  +.+...+.++..++.+...     .......+++++.|+.+.+.+. +++.
T Consensus       227 ~~~~i~~------------l~~~~~~~--~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~r~~l~~~l~-~~~~  286 (354)
T d1fg7a_         227 NEEVINL------------LMKVIAPY--PLSTPVADIAAQALSPQGI-----VAMRERVAQIIAEREYLIAALK-EIPC  286 (354)
T ss_dssp             CHHHHHH------------HHHHSCSS--CSCHHHHHHHHHHTSHHHH-----HHHHHHHHHHHHHHHHHHHHHH-HSTT
T ss_pred             cchhhhh------------hhhhcCcc--chhhHHHHHHHHHHhhhcc-----ccccccchhhhhHHHHHHHHHH-hCCC
Confidence            8888887            66665543  3455566666666654422     2345666778888999999998 7763


Q ss_pred             CCCcccccCCcceEEecCC-C-HHHHHHHHHcccEEEeCCC---------eEEeccCChhhHHHHHHHHHH
Q 012238          402 GKDWSFILRQIGMFSFTGL-N-KAQSDNMTNKWHVYMTKDG---------RISLAGLSLAKCEYLADAIID  461 (467)
Q Consensus       402 ~~~~~~~~~~~g~f~~~~l-~-~~~~~~ll~~~gI~v~~gg---------Ris~~~~~~~~i~~~~~~l~~  461 (467)
                         +....|.+++|+|+++ + .++++.|++ +||++++++         |||++  +++++++++++|+.
T Consensus       287 ---~~~~~p~~~~f~~~~~~~~~~~~~~L~~-~gIlvr~~~~~~~~~~~lRisig--t~ee~~~~l~aLka  351 (354)
T d1fg7a_         287 ---VEQVFDSETNYILARFKASSAVFKSLWD-QGIILRDQNKQPSLSGCLRITVG--TREESQRVIDALRA  351 (354)
T ss_dssp             ---EEEECCCSSSEEEEEETTHHHHHHHHHH-TTEECEECTTSTTCTTEEEEECC--CHHHHHHHHHHHHT
T ss_pred             ---cceeCCCCceEEEEeCCCHHHHHHHHHH-CCcEEecCCCCCCCCCEEEEEeC--CHHHHHHHHHHHhh
Confidence               4456677889999866 3 344556554 699998862         99997  56889999988863

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=100.00  E-value=1.1e-34  Score=288.82  Aligned_cols=325  Identities=12%  Similarity=0.065  Sum_probs=230.8

Q ss_pred             CcEEecCcccCCCCCCCCchH-HHHHHHHHHH-hcC-CCCcCCCCcc----hHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           84 KKLNLGVGAYRTEELQPYVLD-VVKKAENLML-ERG-ENKEYLPIEG----LAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~-~v~~a~~~~~-~~~-~~~~Y~~~~G----~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      -++|+..|+|    .+.  .| ..+.+..... ..+ +...|.-..+    .++|++.|+++.....+...+..+|++  
T Consensus        57 ~~~~~~~gdp----~~~--~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~Ivv--  128 (425)
T d2hoxa1          57 CSADVASGDG----LFL--EEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVF--  128 (425)
T ss_dssp             CCEECCSCCC----GGG--HHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEE--
T ss_pred             ceeeCCCCCC----CCC--CHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEE--
Confidence            5799999988    332  33 3333333332 123 2234543322    389999999985444444445557988  


Q ss_pred             cCCchhHHHHHHHHHHH--------hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCC
Q 012238          157 GLSGTGSLRLAAALIER--------YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~--------~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~  228 (467)
                      ++|++++++++  +.++        +.|||+|+++.|+|+.|....+.+|.+...+..        |.+.+++.++   +
T Consensus       129 G~Gsteli~~~--~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~~~~--------D~~~~~~~~~---~  195 (425)
T d2hoxa1         129 GVGVTQLIHGL--VISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAG--------NAANYVNVSN---P  195 (425)
T ss_dssp             ESHHHHHHHHH--HHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEEE--------EGGGGTTCSC---G
T ss_pred             CCCHHHHHHHH--HHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCccCC--------CHHHHHhhCC---C
Confidence            99999999998  4444        468999999999999999999999887666544        5666665554   6


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc
Q 012238          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (467)
                      +++++++||||||||.+..          +..+++.+|.||+|.+..+...          ....+++|+++||||.||+
T Consensus       196 ~~~ii~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~~~----------~~~~~~~Ivl~S~SK~fgl  255 (425)
T d2hoxa1         196 EQYIEMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYTPI----------KYKADEDILLFTMSKFTGH  255 (425)
T ss_dssp             GGEEEEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTSCC----------CSCBCCSEEEEEHHHHTSC
T ss_pred             CceEEEEECCCCCCcchhh----------hhhhCCEEEEeccccCccccch----------hhhcCCeEEEEeCHHhccC
Confidence            8899999999999998742          2346899999999976555321          1344689999999999999


Q ss_pred             CCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhH-H----HHHHHHHHHHHH
Q 012238          309 YAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALF-D----EWKAEMEMMAGR  383 (467)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~----~~~~~l~~~~~~  383 (467)
                      +|||+||++  +.++.++++            +.+.......+++..+|.++..+|.+.... .    ...+.++..++.
T Consensus       256 aGlRiGw~i--~~~~~i~~~------------~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~  321 (425)
T d2hoxa1         256 SGSRFGWAL--IKDESVYNN------------LLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKK  321 (425)
T ss_dssp             GGGCCEEEE--ECCHHHHHH------------HHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHH
T ss_pred             cchheeeEE--eCCHHHHHH------------HHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999985  578877777            665555556788999999888887543110 0    011235677888


Q ss_pred             HHHHHHHHHHHhhhccCC------CCC-----cccccCCcceEEecCC---CHHHHHHHHHcccEEEeCC---C------
Q 012238          384 IKNVRQKLFDSLSAKDKS------GKD-----WSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKD---G------  440 (467)
Q Consensus       384 ~~~~r~~l~~~l~~~~g~------~~~-----~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~g---g------  440 (467)
                      ++++++.+.+.|+ +.+.      |..     +....+..+.|.|++.   +.+++.++++++||.++||   |      
T Consensus       322 l~~r~~~l~~~L~-~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~~~~~~lL~e~gI~v~pGs~FG~~~~yv  400 (425)
T d2hoxa1         322 LRERWVNITALLD-QSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYV  400 (425)
T ss_dssp             HHHHHHHHHHHHT-TSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEE
T ss_pred             HHHHHHHHHHHHH-hcCCceeeccCCccceeeeeeccCCCcceeeeeCCCChHHHHHHHHHhCCEEEEechhcCCCCCEE
Confidence            8999999999998 6652      000     0111233344677643   2345777888899999997   2      


Q ss_pred             eEEeccCChhhHHHHHHHHHHHHHh
Q 012238          441 RISLAGLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       441 Ris~~~~~~~~i~~~~~~l~~~l~~  465 (467)
                      |||++. +++++++++++|+++++.
T Consensus       401 Risl~~-~~e~ld~~l~rL~~~v~a  424 (425)
T d2hoxa1         401 RLSLIK-TQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             EEECSS-CHHHHHHHHHHHHHHHTC
T ss_pred             EEEecC-CHHHHHHHHHHHHHHHhc
Confidence            999988 889999999999999863

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=1.4e-26  Score=227.23  Aligned_cols=325  Identities=12%  Similarity=0.059  Sum_probs=207.9

Q ss_pred             hhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           77 FKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        77 ~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      .++.....++|++....    .++ ..+...+++    .    ..+.+..+.+++++..++++....     .+++++  
T Consensus        14 i~~~g~~~i~~~~gl~~----~~~-~~~~~~~~~----~----~~~~~~~~~~~l~~~~~~~~~~~~-----~e~~~~--   73 (366)
T d2aeua1          14 LNEKGRDALYDLSGLSG----GFL-IDEKDKALL----N----TYIGSSYFAEKVNEYGLKHLGGDE-----NDKCVG--   73 (366)
T ss_dssp             HHHTCGGGCEECSSCCC----CCC-CCHHHHHHH----T----STTHHHHHHHHHHHHHHHHHTCCT-----TEEEEE--
T ss_pred             hchhccchHhhhccCCC----CCC-ccHHHHHHH----H----HhcCchhhHHHHHHHHHHHccCCC-----ccEEEE--
Confidence            33344446788874433    333 355444433    1    223355678899999999987653     467877  


Q ss_pred             cCCchhHHHHHHHHHHHhCCCCEEEE-c-CCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEE
Q 012238          157 GLSGTGSLRLAAALIERYFPGAKVLI-S-SPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILL  234 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~~~gd~Vlv-~-~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~  234 (467)
                      ++|+++|+..+  +. .+.+||.|++ + .|+|..|...++..|++++  +.       -|++++++.++   +++++++
T Consensus        74 ~~~~~~a~~~~--l~-al~~~~~vi~~~~~~~~~~~~~~~~l~g~~~v--~~-------~d~e~l~~~i~---~~tk~i~  138 (366)
T d2aeua1          74 FNRTSSAILAT--IL-ALKPKKVIHYLPELPGHPSIERSCKIVNAKYF--ES-------DKVGEILNKID---KDTLVII  138 (366)
T ss_dssp             ESSHHHHHHHH--HH-HHCCSEEEEECSSSSCCTHHHHHHHHTTCEEE--EE-------SCHHHHHTTCC---TTEEEEE
T ss_pred             eCCHHHHHHHH--HH-HhCCCCEEEEecCCCcchhHHHHHHhcCCeEE--CC-------CCHHHHHHhcC---CCceEEE
Confidence            99999999887  44 4667776655 3 5899999999999998753  33       27888888887   7899999


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccc
Q 012238          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (467)
Q Consensus       235 i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG  314 (467)
                      +++|+||+  +++.+++++|+++|++||+++|+||+|....++... .....    ..+ ..+++.|+||.+  +|||+|
T Consensus       139 ~~~p~n~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~-~~~~~----~~~-~di~~~S~sK~~--~g~~~G  208 (366)
T d2aeua1         139 TGSTMDLK--VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFN-QPPAL----KLG-ADLVVTSTDKLM--EGPRGG  208 (366)
T ss_dssp             ECBCTTSC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTT-CCCHH----HHT-CSEEEEETTSSS--SSCSCE
T ss_pred             EEecCCCC--cCCHHHHHHHHHHhccCcEEEEEecCcccccccccc-CCCHh----hcC-ceEEEecccccc--ccccee
Confidence            99999996  467889999999999999999999999765543111 11111    122 347889999965  689999


Q ss_pred             eEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          315 AMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS  394 (467)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~  394 (467)
                      |++   +++++++.            ++........++++..|.++...|+..... ..+++.++.++......+.+...
T Consensus       209 ~i~---~~~~~i~~------------~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~-r~~~~~~~~~~i~~~~~~~~~~~  272 (366)
T d2aeua1         209 LLA---GKKELVDK------------IYIEGTKFGLEAQPPLLAGIYRALKNFNLE-RIRKAFERAKNFDLSKIEKLNKE  272 (366)
T ss_dssp             EEE---EEHHHHHH------------HHHHHHTTTCBCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             EEE---ecHHHHHH------------HHHHHhcccccCCHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHhhhhcc
Confidence            995   88999888            665555555666777777776665422111 11111111111111122222222


Q ss_pred             hhhccCCCCCcccccCCcceEEecCC----------CHHHHHHHHHcccEEEeCC-----C----eEEeccCChhh--HH
Q 012238          395 LSAKDKSGKDWSFILRQIGMFSFTGL----------NKAQSDNMTNKWHVYMTKD-----G----RISLAGLSLAK--CE  453 (467)
Q Consensus       395 l~~~~g~~~~~~~~~~~~g~f~~~~l----------~~~~~~~ll~~~gI~v~~g-----g----Ris~~~~~~~~--i~  453 (467)
                      .. .... ..+....+.+.+|+|.+.          +.+++.+|++++||.+.|+     |    ||||+..+.++  .+
T Consensus       273 ~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip~~~~p~~~~~lRis~~~~~~~~i~~d  350 (366)
T d2aeua1         273 LK-AIDD-NINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDN  350 (366)
T ss_dssp             HT-TTCT-TEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHH
T ss_pred             cc-cccc-ccCcccccCccchhccCCCcceeecccCHHHHHHHHHHhCCEEEEECCCCCCCCCEEEEeccccchhhCCHH
Confidence            22 1110 001223345566666532          3457888999999999886     2    99998644333  46


Q ss_pred             HHHHHHHHHHH
Q 012238          454 YLADAIIDSYH  464 (467)
Q Consensus       454 ~~~~~l~~~l~  464 (467)
                      +++++|.+.++
T Consensus       351 ~l~~ai~~~lK  361 (366)
T d2aeua1         351 YIIKAIVESIK  361 (366)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            67777766665

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=6.8e-24  Score=207.57  Aligned_cols=287  Identities=13%  Similarity=0.048  Sum_probs=187.3

Q ss_pred             hHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeee
Q 012238          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY  207 (467)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~  207 (467)
                      ...+++.+|++++.        +++++  |+||++|+.++  +.+.+.|||+|+++.|+|......++..|++++.+|..
T Consensus        49 ~~~~~~~~A~~~g~--------e~~~~--t~g~t~a~~~~--~~al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~  116 (364)
T d2e7ja1          49 HDFIHNQLPKFLGC--------DVARV--TNGAREAKFAV--MHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKT  116 (364)
T ss_dssp             HHHHHTHHHHHTTS--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCC
T ss_pred             HHHHHHHHHHHhCc--------CEEEE--ECcHHHHHHHH--HHHHhCCCcEEEeecccccccchHHHhccceEEEeeec
Confidence            45678899999643        47888  99999999998  55667899999999999988888889999999999987


Q ss_pred             cCCCCCCChhhHHHHHHcC--CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhH
Q 012238          208 DPKTVGLDFEGMIADIKAA--PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS  285 (467)
Q Consensus       208 ~~~~~~~d~~~l~~~l~~~--~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~  285 (467)
                      +..++.+|++.+++.+++.  ..++.++++++|+||||.+.+.+   +|+++|++||+++++|++|......   .+.. 
T Consensus       117 ~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~---~I~~ia~~~~i~livD~a~~~g~~~---~~~~-  189 (364)
T d2e7ja1         117 DYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVK---KIAKVCSEYDVPLLVNGAYAIGRMP---VSLK-  189 (364)
T ss_dssp             CTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHH---HHHHHHHTTTCCEEEECTTTBTTBC---CCHH-
T ss_pred             cccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecch---hheeccccccchhhccccchhhhhh---hccc-
Confidence            6667889999999999753  24567888999999999998855   7788899999999999998543322   1211 


Q ss_pred             HHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCcc--------CCCchHHH
Q 012238          286 VRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMY--------SNPPVHGA  357 (467)
Q Consensus       286 ~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~  357 (467)
                           +.+ ..+++.|++|.++.+| ++||++   .+++.++.            +........        ........
T Consensus       190 -----~~g-~D~~~~S~~K~~~~~g-~~g~l~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  247 (364)
T d2e7ja1         190 -----EIG-ADFIVGSGHKSMAASG-PIGVMG---MKEEWAEI------------VLRRSEKYKNKEVELLGCTARGATI  247 (364)
T ss_dssp             -----HHT-CSEEEEEHHHHSSCCS-SCEEEE---ECTTTTTT------------TTCBCSSCTTSBGGGTTCCCCSHHH
T ss_pred             -----ccc-cceeeeccccccCCCC-CEEEEE---ECHHHHHH------------HHhhccccCcccccccccccchhHH
Confidence                 112 3477899999999776 789995   55655554            222111110        01111111


Q ss_pred             HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc--cCC--cceEEecCC----------CHH
Q 012238          358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI--LRQ--IGMFSFTGL----------NKA  423 (467)
Q Consensus       358 ~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~--~~~--~g~f~~~~l----------~~~  423 (467)
                      ..+...+.  ..    .+.++...+.+ +++.++.+.+. ++|+    ...  .+.  ...|.....          ...
T Consensus       248 ~~~~~~l~--~~----~~~~~~~~~~~-~~~~~~~~~l~-~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (364)
T d2e7ja1         248 ITLMASFP--HV----RERIKRWDEEV-EKARRFAAEME-KLGI----KQLGDNPHNHDLMFFHAEVLYEISKKAKGGRF  315 (364)
T ss_dssp             HHHHHHHH--HH----HHHGGGHHHHH-HHHHHHHHHHH-HTTC----EEESSSSCCSSEEEEECHHHHHHHHHSSSGGG
T ss_pred             HHHHHHHH--HH----HHHHHHHHHHH-HHHHHHHHHHH-HcCC----eecCCCCCCcceEEEeccchHHHHHHhhccch
Confidence            12211111  11    12233333333 34556677777 7663    221  111  122222110          112


Q ss_pred             HHHHHHHcccEEEeCCC-----eEEeccCChhhHHHHHHHHHHHHHhcC
Q 012238          424 QSDNMTNKWHVYMTKDG-----RISLAGLSLAKCEYLADAIIDSYHNVS  467 (467)
Q Consensus       424 ~~~~ll~~~gI~v~~gg-----Ris~~~~~~~~i~~~~~~l~~~l~~~~  467 (467)
                      .....+.+.++.....|     |++....+++++++++++|++++++.+
T Consensus       316 ~~~~~l~~~~~~~~~~g~~~~~~~~~~~~t~edid~~~~~l~ei~~~ys  364 (364)
T d2e7ja1         316 FLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKYS  364 (364)
T ss_dssp             HHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhcCCceecCCCcceEEEeccCCCHHHHHHHHHHHHHHHHHhC
Confidence            23344445577654433     555434488999999999999999875

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=9.1e-23  Score=201.79  Aligned_cols=319  Identities=14%  Similarity=0.073  Sum_probs=206.7

Q ss_pred             cCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCC------------cchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           93 YRTEELQPYVLDVVKKAENLMLERGENKEYLPI------------EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        93 ~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~------------~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      |+|.++..++++.|++++.+.+...  ..|+.+            .-++++|+.+|++++..      +++|++  |.|+
T Consensus         5 YlD~aa~~p~~~~v~ea~~~~~~~~--~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~------~~~I~~--~~~~   74 (391)
T d1p3wa_           5 YLDYSATTPVDPRVAEKMMQFMTMD--GTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD------PREIVF--TSGA   74 (391)
T ss_dssp             ECBTTTCCCCCHHHHHHHHTTTSTT--SCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC------GGGEEE--ESSH
T ss_pred             EeeCccccCCCHHHHHHHHHHHHhc--cccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCC------CCcEEE--ECCH
Confidence            5677677677999999999887532  223211            12567899999998654      789999  9999


Q ss_pred             hhHHHHHHHHHH--HhCCCCEEEEcCCCCcchHHHH---hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238          161 TGSLRLAAALIE--RYFPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (467)
Q Consensus       161 t~al~l~~~~l~--~~~~gd~Vlv~~P~y~~~~~~~---~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i  235 (467)
                      |++++.+...+.  .+.+||+|++.++.|+.+...+   +..|+++..+|.+  ..+.+|++.+++.++   ++|+++++
T Consensus        75 t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~~~~~i~---~~T~lv~i  149 (391)
T d1p3wa_          75 TESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQ--RNGIIDLKELEAAMR---DDTILVSI  149 (391)
T ss_dssp             HHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCC--TTSCCCHHHHHHHCC---TTEEEEEC
T ss_pred             HHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCC--CCCeEcHHHHHHhCC---CCcEEEEE
Confidence            999998743322  2469999999999998775544   4569999999883  456799999999997   78999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccce
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  315 (467)
                      ++++||||.+++.+   +|+++|+++|+++++|.++..... ..+..         .....+++.|.+|.+|.+|.  |+
T Consensus       150 s~~~n~tG~~~~~~---~I~~~~~~~~~~~ivD~~~~~g~~-~~d~~---------~~~~D~~~~s~~k~~g~~g~--g~  214 (391)
T d1p3wa_         150 MHVNNEIGVVQDIA---AIGEMCRARGIIYHVDATQSVGKL-PIDLS---------QLKVDLMSFSGHKIYGPKGI--GA  214 (391)
T ss_dssp             CSBCTTTCCBCCHH---HHHHHHHHHTCEEEEECTTTBTTB-CCCTT---------TSCCSEEEEESTTTTSCSSC--EE
T ss_pred             ECCCCCCeeECCHH---HHHHHhccCCcEEEEeeccccCCc-cccch---------hccccccccccccccCCCce--EE
Confidence            99999999999976   677779999999999998653322 12211         11234677899999988774  66


Q ss_pred             EEEecCCHHHHhhhhhhhHHHHHHHHHhhc-------cCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238          316 MNVVCSSSDLAARCCEVAVIQVKSQLKRLA-------RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  388 (467)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r  388 (467)
                      ++  ... +....            +....       .......+.....+....+.      .+.+......+++++.+
T Consensus       215 ~~--~~~-~~~~~------------~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~  273 (391)
T d1p3wa_         215 LY--VRR-KPRVR------------IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYR------IAKEEMATEMERLRGLR  273 (391)
T ss_dssp             EE--ECB-TTBCC------------CCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred             EE--Eec-chhcc------------cCCcccCCccccCcccCcchhhhhhhhhhhhh------HHHHHhhHHHHHHHHHH
Confidence            64  132 22222            11110       01111222222222211111      11223445556777788


Q ss_pred             HHHHHHhhhccCCCCCcccc----cCCcceEEecCCCHHHHHHHHHcccEEEeCC-------------------------
Q 012238          389 QKLFDSLSAKDKSGKDWSFI----LRQIGMFSFTGLNKAQSDNMTNKWHVYMTKD-------------------------  439 (467)
Q Consensus       389 ~~l~~~l~~~~g~~~~~~~~----~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~g-------------------------  439 (467)
                      +.+.+.|. .++... +...    .+....|.+.+.+.+.+...++  ++.++.|                         
T Consensus       274 ~~l~~~L~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~  349 (391)
T d1p3wa_         274 NRLWNGIK-DIEEVY-LNGDLEHGAPNILNVSFNYVEGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAH  349 (391)
T ss_dssp             HHHHHTTT-TSTTEE-ECSCTTTSCTTEEEEEETTSCHHHHHHHTT--TEECBCCCC------CCCHHHHHHTCCHHHHH
T ss_pred             HHHHHHHH-hhcCee-ecccccccCceEEEEEeCCCChHHHHHHhC--CCEEEccccccCCccchhHHHHHcCCCccccC
Confidence            88888887 654200 0011    1222223444566655444443  4554332                         


Q ss_pred             C--eEEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238          440 G--RISLAGL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 g--Ris~~~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                      |  |||++.. +++|+++++++|+++++++
T Consensus       350 g~iRiS~~~~nt~edid~l~~~l~~~l~~l  379 (391)
T d1p3wa_         350 SSIRFSLGRFTTEEEIDYTIELVRKSIGRL  379 (391)
T ss_dssp             TEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence            2  9998755 6799999999999998865

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.87  E-value=3e-21  Score=189.98  Aligned_cols=318  Identities=13%  Similarity=0.019  Sum_probs=193.2

Q ss_pred             CCCCCCCCchHHHHHHHHHHHhc----CCCCcCCC----CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHH
Q 012238           94 RTEELQPYVLDVVKKAENLMLER----GENKEYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (467)
Q Consensus        94 ~d~~~~p~~~~~v~~a~~~~~~~----~~~~~Y~~----~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~  165 (467)
                      +|.++..+.|..|.+++.+.+..    +. ..|..    ..-..++|+.+|++++..      +++|++  |.|+|++++
T Consensus        11 ld~~~~~~~p~~v~ea~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~la~~~~~~------~~~i~~--~~g~t~a~~   81 (381)
T d1elua_          11 FNFGGQGILPTVALEAITAMYGYLQENGP-FSIAANQHIQQLIAQLRQALAETFNVD------PNTITI--TDNVTTGCD   81 (381)
T ss_dssp             CCTTTCCCCCHHHHHHHHHHHHHHHHHCS-SSHHHHHHHHHHHHHHHHHHHHHTTSC------GGGEEE--ESSHHHHHH
T ss_pred             eeCCcccCCCHHHHHHHHHHHHHhhcCCC-ccchhhHHHHHHHHHHHHHHHHHhCCC------cccEEE--ECChHHHhh
Confidence            33444444477788888776532    11 12211    122567888999997643      789998  999999999


Q ss_pred             HHHHHHHH-hCCCCEEEEcCCCCcchHH----HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          166 LAAALIER-YFPGAKVLISSPTWGNHKN----IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       166 l~~~~l~~-~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      ++  +.+. +.+||+|+++++.|+....    ..+..|++++.+|..+......+.+.+++.++   ++++++++++++|
T Consensus        82 ~~--~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~---~~t~~v~i~~~~n  156 (381)
T d1elua_          82 IV--LWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG---PKTRLVILSHLLW  156 (381)
T ss_dssp             HH--HHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC---TTEEEEEEESBCT
T ss_pred             hc--chhhhhcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhc---ccccccccccccc
Confidence            97  3333 4599999999999975444    44567999999987433222222333433333   7889999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHh----cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceE
Q 012238          241 PTGIDPTPEQWEKIADVIQE----KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~----~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~  316 (467)
                      |||.+++.+++   .++|++    +++++++|.++.... ...+.         ....-.+++.|+.|.++.| .++|++
T Consensus       157 ~tG~~~~~~~I---~~l~~~~~~~~~~~~~vD~~~~~g~-~~~~~---------~~~~~D~~~~s~~K~~~~p-~G~g~l  222 (381)
T d1elua_         157 NTGQVLPLAEI---MAVCRRHQGNYPVRVLVDGAQSAGS-LPLDF---------SRLEVDYYAFTGHKWFAGP-AGVGGL  222 (381)
T ss_dssp             TTCCBCCHHHH---HHHHHHCCSSSCCEEEEECTTTBTT-BCCCT---------TTSCCSEEEEESSSTTCCC-TTCEEE
T ss_pred             cccccchhhHH---HHHHhhccccccccccccccccccc-ccccc---------ccccccccccccccccccc-chhhHH
Confidence            99999998755   555776    468999999854322 11111         1123457889999998743 456777


Q ss_pred             EEecCCHHHHhhhhhhhHHHHHHHHHhh----------------------ccCccCCCchHHHHHHHHHhCChhhHHHHH
Q 012238          317 NVVCSSSDLAARCCEVAVIQVKSQLKRL----------------------ARPMYSNPPVHGARIVANVVGNPALFDEWK  374 (467)
Q Consensus       317 ~~v~~~~~~~~~~~~~~~~~~~~~l~~~----------------------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~  374 (467)
                      +   ..++..+.            +...                      .+.....++.....++..++...   .. .
T Consensus       223 ~---~~~~~~~~------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~---~~-~  283 (381)
T d1elua_         223 Y---IHGDCLGE------------INPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLH---QR-Q  283 (381)
T ss_dssp             E---ECTTTGGG------------CCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHH---HH-H
T ss_pred             H---hhHHHHHh------------cCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhH---HH-h
Confidence            5   33333332            1100                      00011123333222222222110   00 0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc---cCCcceEEec--C-CCHHHHHHHHHcccEEEeCC---C--eEE
Q 012238          375 AEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI---LRQIGMFSFT--G-LNKAQSDNMTNKWHVYMTKD---G--RIS  443 (467)
Q Consensus       375 ~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~---~~~~g~f~~~--~-l~~~~~~~ll~~~gI~v~~g---g--Ris  443 (467)
                      ...+...++.+++++++.+.|+ +++.   ++.+   .+.++++.|.  + ...+.+.+.|+++||.++..   +  |||
T Consensus       284 g~~~~~~~~~~~~~~~l~~~L~-~~~~---~~~~~~~~~~~~~vsf~~~~~~~~~~i~~~L~~~gi~v~~~~~~~~lRis  359 (381)
T d1elua_         284 GTAEERYQAICQRSEFLWRGLN-QLPH---VHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRAC  359 (381)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH-HSTT---EEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEE
T ss_pred             cccccchhhhhhHHHHHHHHHh-cCCC---eEecCCCCccccEEEEEcCCCCCHHHHHHHHHhCCcEEEecCCCCEEEEe
Confidence            0123455777788889999998 7631   3443   3456655442  2 34455556666789987543   2  999


Q ss_pred             eccC-ChhhHHHHHHHHHHH
Q 012238          444 LAGL-SLAKCEYLADAIIDS  462 (467)
Q Consensus       444 ~~~~-~~~~i~~~~~~l~~~  462 (467)
                      ++.. +++++++++++|++.
T Consensus       360 ~~~~nt~edid~ll~~l~e~  379 (381)
T d1elua_         360 CHYITDEEEINHLLARLADF  379 (381)
T ss_dssp             CCTTCCHHHHHHHHHHHTTC
T ss_pred             cCCCCCHHHHHHHHHHHHhh
Confidence            8754 679999999998763

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=3e-20  Score=182.41  Aligned_cols=330  Identities=13%  Similarity=0.046  Sum_probs=207.0

Q ss_pred             cCCCCCCCCchHHHHHHHHHHHhcCCCC---cCCC----CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHH
Q 012238           93 YRTEELQPYVLDVVKKAENLMLERGENK---EYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (467)
Q Consensus        93 ~~d~~~~p~~~~~v~~a~~~~~~~~~~~---~Y~~----~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~  165 (467)
                      |+|.++..++|+.|.+++.+.+.+....   .|..    ..-+.+.|+.+|++++..      +++|++  +.|+|+++.
T Consensus         4 yld~a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~------~~~i~~--~~~~T~~l~   75 (376)
T d1eg5a_           4 YFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVS------PSEIFF--TSCATESIN   75 (376)
T ss_dssp             ECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSC------GGGEEE--ESCHHHHHH
T ss_pred             EEECcccccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCC------CCcEEE--ECCHHHHHH
Confidence            4566666566899999998887543111   1110    112556789999998654      789999  999999999


Q ss_pred             HHHHHHH--HhCCCCEEEEcCCCCcchHHHH---hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238          166 LAAALIE--RYFPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (467)
Q Consensus       166 l~~~~l~--~~~~gd~Vlv~~P~y~~~~~~~---~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N  240 (467)
                      .+...+.  ...+|+.|++....|+.+....   +..|++++.+|++  .++.+|++.+++.++   ++++++++++++|
T Consensus        76 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~--~~~~id~~~l~~~i~---~~t~lv~is~v~~  150 (376)
T d1eg5a_          76 WILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD--SRGVVKLEELEKLVD---EDTFLVSIMAANN  150 (376)
T ss_dssp             HHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC--TTSCBCHHHHHHHCC---TTEEEEEEESBCT
T ss_pred             hhhhcccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCC--CCCeECHHHHHHhcC---CCceEEEEECCcc
Confidence            9743332  2347888888888887665544   5679999999984  467899999999997   7899999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (467)
Q Consensus       241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (467)
                      +||...+.+++.++++ ++..++++++|.+. .+.....+..         ..+..+++.|++|.+|.+|..++|+   .
T Consensus       151 ~tG~~~~~~~i~~~~~-~~~~~~~~~vD~~q-~~g~~~~d~~---------~~~~D~~~~s~~K~~gp~G~~~l~~---~  216 (376)
T d1eg5a_         151 EVGTIQPVEDVTRIVK-KKNKETLVHVDAVQ-TIGKIPFSLE---------KLEVDYASFSAHKFHGPKGVGITYI---R  216 (376)
T ss_dssp             TTCBBCCHHHHHHHHH-HHCTTCEEEEECTT-TTTTSCCCCT---------TTCCSEEEEEGGGGTSCTTCEEEEE---C
T ss_pred             ccceeeeehhhhhhhh-hcccCceeEEEeee-cccccccccc---------ccCccceecccceeecCCCceeEEe---c
Confidence            9999999997777644 34458999999883 3333222111         1234588999999999999866665   2


Q ss_pred             CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238          321 SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  400 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g  400 (467)
                      .... +..        ................+............      .+..............+.++.+.|. ...
T Consensus       217 ~~~~-~~p--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~-~~~  280 (376)
T d1eg5a_         217 KGVP-IRP--------LIHGGGQERGLRSGTQNVPGIVGAARAME------IAVEELSEAAKHMEKLRSKLVSGLM-NLG  280 (376)
T ss_dssp             TTSC-CCC--------SBCSSCTTTTTBCSCCCHHHHHHHHHHHH------HHHHTHHHHHHHHHHHHHHHHHHHH-TTT
T ss_pred             cCcc-cCC--------cccCCCCcccccCCcccchhhhhHHHHhh------ccccchhhhhhhhhhhhhhhccccc-ccc
Confidence            3221 111        00000000000111222233222222211      1112233444455556666777776 443


Q ss_pred             CC--CCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCC-----------------C----------eEEeccC-Chh
Q 012238          401 SG--KDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKD-----------------G----------RISLAGL-SLA  450 (467)
Q Consensus       401 ~~--~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~g-----------------g----------Ris~~~~-~~~  450 (467)
                      .-  ............+.+.+...+.+...++++||.++.|                 |          |||++.. +++
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~e  360 (376)
T d1eg5a_         281 AHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEE  360 (376)
T ss_dssp             CEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHH
T ss_pred             ccccccccccccceeeeccCCCCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHH
Confidence            10  0001111111223344667777777888889988754                 1          9998755 679


Q ss_pred             hHHHHHHHHHHHHHh
Q 012238          451 KCEYLADAIIDSYHN  465 (467)
Q Consensus       451 ~i~~~~~~l~~~l~~  465 (467)
                      |+++++++|++++.-
T Consensus       361 did~l~~~L~~iv~~  375 (376)
T d1eg5a_         361 EVDYFLKKIEEILSF  375 (376)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999999863

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=7.9e-20  Score=181.23  Aligned_cols=323  Identities=12%  Similarity=0.079  Sum_probs=214.3

Q ss_pred             cCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC--------CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHH
Q 012238           93 YRTEELQPYVLDVVKKAENLMLERGENKEYLP--------IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (467)
Q Consensus        93 ~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~--------~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al  164 (467)
                      |+|.++..++|+.|.+++.+.+..........        ..-+++.|+.+|++++...     +++|++  +.|+|+++
T Consensus        25 Yld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~-----~~~i~~--~~~~T~~~   97 (405)
T d1jf9a_          25 YLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARS-----AEELVF--VRGTTEGI   97 (405)
T ss_dssp             ECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSC-----GGGEEE--ESSHHHHH
T ss_pred             EEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCC-----cccccc--cCcHHHHH
Confidence            44555555668999999988774321111100        1236788999999987442     678988  99999999


Q ss_pred             HHHHHHHH--HhCCCCEEEEcCCCCcch----HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q 012238          165 RLAAALIE--RYFPGAKVLISSPTWGNH----KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (467)
Q Consensus       165 ~l~~~~l~--~~~~gd~Vlv~~P~y~~~----~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p  238 (467)
                      +.++..+.  ...+||.|++.+-.|+..    ....+..|++++.+|++  .++.+|++.+++.+.   +++++++++..
T Consensus        98 ~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~--~~g~~~~~~~~~~i~---~~t~lv~~~~v  172 (405)
T d1jf9a_          98 NLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLN--PDGTLQLETLPTLFD---EKTRLLAITHV  172 (405)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBC--TTSCBCGGGHHHHCC---TTEEEEEEESB
T ss_pred             HHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCC--CCCcCCHHHHHHhcc---CCcEEEEEecC
Confidence            98643322  345899999999998764    34446779999999984  456799999998887   79999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEE
Q 012238          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (467)
Q Consensus       239 ~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (467)
                      +|.||.+++.+   +|+++|+++|+++++|.+ +......  .+..      .. .-.+++.|..|.+|.+|  +|+++ 
T Consensus       173 ~~~tG~~~pi~---~i~~~~~~~g~~~~vD~~-q~~g~~~--id~~------~~-~~D~~~~s~hK~~Gp~G--~g~l~-  236 (405)
T d1jf9a_         173 SNVLGTENPLA---EMITLAHQHGAKVLVDGA-QAVMHHP--VDVQ------AL-DCDFYVFSGHKLYGPTG--IGILY-  236 (405)
T ss_dssp             CTTTCCBCCHH---HHHHHHHHTTCEEEEECT-TTTTTSC--CCHH------HH-TCSEEEEEGGGTTSCSS--CEEEE-
T ss_pred             CCcccccCchH---HhhhHHHHcCCeeecccc-eeccccc--cchh------hc-CCceeeccccccccCCC--ceeee-
Confidence            99999999987   556669999999999998 4443322  2221      11 23578999999999887  57775 


Q ss_pred             ecCCHHHHhhhhhhhHHHHHHHHHhh----------------------ccCccCCCchHHHHHHHHHhCChhhHHHHHHH
Q 012238          319 VCSSSDLAARCCEVAVIQVKSQLKRL----------------------ARPMYSNPPVHGARIVANVVGNPALFDEWKAE  376 (467)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~l~~~----------------------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  376 (467)
                        .+++..+.            +...                      .+......+..+..++..+++   +..  +..
T Consensus       237 --v~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~---~~~--~~g  297 (405)
T d1jf9a_         237 --VKEALLQE------------MPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALE---YVS--ALG  297 (405)
T ss_dssp             --ECHHHHTT------------CCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHH---HHH--HHC
T ss_pred             --echhhhcc------------cCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHH---HHH--HhC
Confidence              34544433            1110                      000112233333333333332   111  112


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccC--CcceEE--ecCCCHHHHHHHHHcccEEEeCC-------------
Q 012238          377 MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR--QIGMFS--FTGLNKAQSDNMTNKWHVYMTKD-------------  439 (467)
Q Consensus       377 l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~--~~g~f~--~~~l~~~~~~~ll~~~gI~v~~g-------------  439 (467)
                      ++.+.++.....+.+.+.++ ..+.   .....+  .++.+.  ..+.+.+.+..+|+++||.++.|             
T Consensus       298 ~~~i~~~~~~L~~~~~~~l~-~~~~---~~~~~~~~r~~ivsf~~~~~~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~  373 (405)
T d1jf9a_         298 LNNIAEYEQNLMHYALSQLE-SVPD---LTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNV  373 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-TSTT---EEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHhhhh-cCCc---ccccCCcCcCcEEEEEcCCCCHHHHHHHHHHCCcEEEccchhhhhHHHhcCC
Confidence            45666666677777788887 6643   222222  234433  23566677767778889998743             


Q ss_pred             -C--eEEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238          440 -G--RISLAGL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       440 -g--Ris~~~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                       |  |||++.. +.+|+++++++|+++++-+
T Consensus       374 ~g~iRiS~~~ynt~eDid~l~~~l~~i~r~~  404 (405)
T d1jf9a_         374 PAMCRASLAMYNTHEEVDRLVTGLQRIHRLL  404 (405)
T ss_dssp             SCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence             3  9998865 5689999999999998754

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=2.5e-21  Score=186.28  Aligned_cols=313  Identities=14%  Similarity=0.039  Sum_probs=193.2

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEE
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI  182 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv  182 (467)
                      +|.+++|+.+... + ...|++.+...+|++.+|+++. .       +++++  ++||++|+.++  +.....+||.+++
T Consensus        13 ~p~v~~A~~~a~~-g-~~~yg~~p~~~~le~~lA~~~G-~-------~~~~~--~~sGt~A~~~a--l~a~~~~g~~~~~   78 (343)
T d1m6sa_          13 TEEMRKAMAQAEV-G-DDVYGEDPTINELERLAAETFG-K-------EAALF--VPSGTMGNQVS--IMAHTQRGDEVIL   78 (343)
T ss_dssp             CHHHHHHHHTCCC-C-CGGGTCCHHHHHHHHHHHHHTT-C-------SEEEE--ESCHHHHHHHH--HHHHCCTTCEEEE
T ss_pred             CHHHHHHHHhhhc-C-CcccCCCHHHHHHHHHHHHHHC-C-------CeEEE--eCCHHHHHHHH--HHHHhccCCceec
Confidence            6789999876532 2 3668888899999999999953 2       35666  78999998887  5556779999999


Q ss_pred             cCCCCcchHH---HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC----CCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012238          183 SSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA----PGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (467)
Q Consensus       183 ~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~----~~~~~~i~i~~p~NPTG~~~~~~~l~~l~  255 (467)
                      ..+.+..+..   .....+..+..++..   .+..|++.+++.+...    +....+++.+.++|+.|.+++.+++.+|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~  155 (343)
T d1m6sa_          79 EADSHIFWYEVGAMAVLSGVMPHPVPGK---NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEIC  155 (343)
T ss_dssp             ETTCHHHHSSTTHHHHHTCCEEEEECEE---TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHH
T ss_pred             cccccceeeecccccccccceeeccccc---cCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHH
Confidence            9988865543   333444444455442   3457999999988753    22344667777899999999999999999


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHH
Q 012238          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVI  335 (467)
Q Consensus       256 ~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~  335 (467)
                      ++|+++|+++++|++|..+.....   ....... ....... +.  +|..+..|.+.|++.   ...+.+..       
T Consensus       156 ~~~~~~g~~~~~D~a~~~~~~~~~---~~~~~~~-~~~~~~~-~~--~~~~~~~g~~~~~~~---~~~~~~~~-------  218 (343)
T d1m6sa_         156 TIAKEHGINVHIDGARIFNASIAS---GVPVKEY-AGYADSV-MF--CLSKGLCAPVGSVVV---GDRDFIER-------  218 (343)
T ss_dssp             HHHHHHTCEEEEEETTHHHHHHHH---CCCHHHH-HHTCSEE-EE--ESSSTTCCSSCEEEE---ECHHHHHH-------
T ss_pred             HHHHhcCeEEEecccccccccccc---ccchhhh-ccccccc-cc--ccccccccccccccc---ccHHHHhh-------
Confidence            999999999999999765543210   0001011 1112222 23  333344556667774   66666655       


Q ss_pred             HHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceE
Q 012238          336 QVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF  415 (467)
Q Consensus       336 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f  415 (467)
                           ..........+.+.....++......        .......+...+++..+.+.+. +++.   .....+....+
T Consensus       219 -----~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~  281 (343)
T d1m6sa_         219 -----ARKARKMLGGGMRQAGVLAAAGIIAL--------TKMVDRLKEDHENARFLALKLK-EIGY---SVNPEDVKTNM  281 (343)
T ss_dssp             -----HHHHHHHHTCCCSSTHHHHHHHHHHH--------HHSSTTHHHHHHHHHHHHHHHH-HHTC---BCCGGGCCSSE
T ss_pred             -----hHhhCcccccccchhHHHHHhhhhhh--------hhhHHHHHHHHHHHHHhhhHHH-Hhcc---CccCCCCCceE
Confidence                 22222211222222222222211110        0011122233344444555555 4432   23333444556


Q ss_pred             EecCC-----CH-HHHHHHHHcccEEEeCCC----eEEecc-CChhhHHHHHHHHHHHHHhcC
Q 012238          416 SFTGL-----NK-AQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEYLADAIIDSYHNVS  467 (467)
Q Consensus       416 ~~~~l-----~~-~~~~~ll~~~gI~v~~gg----Ris~~~-~~~~~i~~~~~~l~~~l~~~~  467 (467)
                      +|+.+     +. ++.++|++ +||++.+.|    ||+++. .+++++++++++|++++++++
T Consensus       282 v~~~~~~~~~~a~~l~~~L~~-~Gi~v~~~~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~~  343 (343)
T d1m6sa_         282 VILRTDNLKVNAHGFIEALRN-SGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKFS  343 (343)
T ss_dssp             EEEECTTSSSCHHHHHHHHHH-HTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEeCCCcccHHHHHHHHHH-CCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence            66643     33 45566555 599998875    887653 478999999999999999875

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.4e-18  Score=170.45  Aligned_cols=322  Identities=15%  Similarity=0.120  Sum_probs=216.8

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-C-----CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-G-----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~-----~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (467)
                      +.+.+||+.-.|.   +... .|.++++..+.+++ +     ....+....-..+|.+.+|+++..        +..++ 
T Consensus        37 g~~~l~f~s~dYL---Gl~~-~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~--------e~al~-  103 (383)
T d1bs0a_          37 DRQYLNFSSNDYL---GLSH-HPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGY--------SRALL-  103 (383)
T ss_dssp             TEEEEECSCCCTT---SGGG-CHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC--------SEEEE-
T ss_pred             CeEEEEEEccccc---ccCC-CHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcCC--------CceEE-
Confidence            3478999987773   3333 66777777777643 1     112233344568999999999743        35556 


Q ss_pred             ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (467)
Q Consensus       156 ~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i  235 (467)
                       .++|..+...+  +.....++|.|++..-.+......++..+.+++.++.       .|++.+++.+.+.++...++++
T Consensus       104 -~~SG~~an~~~--i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~h-------nd~~~le~~l~~~~~~~~~vv~  173 (383)
T d1bs0a_         104 -FISGFAANQAV--IAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVT  173 (383)
T ss_dssp             -ESCHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEE
T ss_pred             -ecccchhhHHH--HHhhcCCCceEEeeccccHHHhhccccCCCcceEecc-------hHHHHHHHHhcccCCCceEEEe
Confidence             68888888776  4445679999999999999888888888888877765       6899999999887777889999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccce
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  315 (467)
                      ....+.+|.+.+.+   +|.++|++||+++++||++.....+.   ........... ...+++.+++|.+|.+|   |+
T Consensus       174 e~v~s~~G~i~pl~---~l~~l~~~~~~~livDeah~~gv~G~---~g~G~~~~~~~-~~~~~~~t~~ka~g~~G---g~  243 (383)
T d1bs0a_         174 EGVFSMDGDSAPLA---EIQQVTQQHNGWLMVDDAHGTGVIGE---QGRGSCWLQKV-KPELLVVTFGKGFGVSG---AA  243 (383)
T ss_dssp             ESBCTTTCCBCCHH---HHHHHHHHTTCEEEEECTTTTTTSSG---GGCCHHHHTTC-CCSEEEEESSSTTSSCC---EE
T ss_pred             cCCCCCCCcccchh---HHHHHHHhcCcEEEeecceeeeecCC---cccchHHHcCC-ccccccccccccccccc---cc
Confidence            99999999999977   45556999999999999987766652   22222222222 34566789999999876   77


Q ss_pred             EEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc-cC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          316 MNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM-YS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  393 (467)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~  393 (467)
                      +   +++.+.++.            ++...+.. ++ ..+.....++...+   .+.+  ....+..++++.++..++.+
T Consensus       244 v---~~~~~~~~~------------l~~~~~~~~~s~~~~p~~~aa~~~a~---~~~~--~~~~~~~~~~l~~~~~~~~~  303 (383)
T d1bs0a_         244 V---LCSSTVADY------------LLQFARHLIYSTSMPPAQAQALRASL---AVIR--SDEGDARREKLAALITRFRA  303 (383)
T ss_dssp             E---EECHHHHHH------------HHHHCHHHHSSBCCCHHHHHHHHHHH---HHHH--SHHHHHHHHHHHHHHHHHHH
T ss_pred             c---ccchhHHHH------------HHhhchhhhhcccccchHHHHHHHHH---HHHH--hhhhHHHHHHHHHHHHHHHH
Confidence            7   477887777            44332221 22 22222212222222   1111  12245677788888899999


Q ss_pred             HhhhccCCCCCcccccCCcce-EEecCCCH---HHHHHHHHcccEEEeC-------CC----eEEecc-CChhhHHHHHH
Q 012238          394 SLSAKDKSGKDWSFILRQIGM-FSFTGLNK---AQSDNMTNKWHVYMTK-------DG----RISLAG-LSLAKCEYLAD  457 (467)
Q Consensus       394 ~l~~~~g~~~~~~~~~~~~g~-f~~~~l~~---~~~~~ll~~~gI~v~~-------gg----Ris~~~-~~~~~i~~~~~  457 (467)
                      .|+ ++|+    ......+.+ .++++-..   ++.++|++ +||++.+       -|    ||++.. .++++|+++++
T Consensus       304 ~l~-~~g~----~~~~~~s~Ii~v~~g~~~~a~~~~~~L~~-~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~  377 (383)
T d1bs0a_         304 GVQ-DLPF----TLADSCSAIQPLIVGDNSRALQLAEKLRQ-QGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLE  377 (383)
T ss_dssp             HHT-TSSC----EECSCCSSBCCEEEESHHHHHHHHHHHHH-TTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHH
T ss_pred             HHH-hcCC----ccCCCCCCEEEEEECCHHHHHHHHHHHHH-CCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHH
Confidence            998 8873    444443332 24554322   34556665 6999854       23    777753 48899999999


Q ss_pred             HHHHH
Q 012238          458 AIIDS  462 (467)
Q Consensus       458 ~l~~~  462 (467)
                      +|..+
T Consensus       378 ~L~~~  382 (383)
T d1bs0a_         378 VLHGN  382 (383)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98764

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.83  E-value=1.8e-18  Score=171.45  Aligned_cols=324  Identities=12%  Similarity=0.099  Sum_probs=212.8

Q ss_pred             cCCCCCCCCchHHHHHHHHHHHhcCCCC----cCCC----CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHH
Q 012238           93 YRTEELQPYVLDVVKKAENLMLERGENK----EYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (467)
Q Consensus        93 ~~d~~~~p~~~~~v~~a~~~~~~~~~~~----~Y~~----~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al  164 (467)
                      |+|.++..++|+.|.+++.+.+......    .|..    ..-+++.|+.++++++...     ++.+++  +.++++++
T Consensus        25 Yld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~-----~~~i~~--~~~tt~~~   97 (408)
T d1t3ia_          25 YLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARS-----PREIVY--TRNATEAI   97 (408)
T ss_dssp             ECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSC-----GGGEEE--ESSHHHHH
T ss_pred             EeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCC-----cccEEe--ecchHHHH
Confidence            4455555556899999998877542211    1110    1235678999999986542     567888  89999999


Q ss_pred             HHHHHHH--HHhCCCCEEEEcCCCCcchH----HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q 012238          165 RLAAALI--ERYFPGAKVLISSPTWGNHK----NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (467)
Q Consensus       165 ~l~~~~l--~~~~~gd~Vlv~~P~y~~~~----~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p  238 (467)
                      ++++..+  ..+.+||+|++.+-.|+...    ...+..|+++..+|.  +.+...|.+.+++.+.   +++++++++..
T Consensus        98 n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~--~~~~~~~~~~l~~~~~---~~t~lv~i~~~  172 (408)
T d1t3ia_          98 NLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL--DEQESFDLEHFKTLLS---EKTKLVTVVHI  172 (408)
T ss_dssp             HHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECB--CTTSSBCHHHHHHHCC---TTEEEEEEESB
T ss_pred             HHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeec--cccccccHHHhhhccC---CCceEEEEecc
Confidence            8874332  23458999999998887543    344567999999987  4456789999988876   78999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEE
Q 012238          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (467)
Q Consensus       239 ~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (467)
                      +|-||..++.+   +|.++|+++|+++++|.+ +.+....+  +..      .. +-.+++.|..|.+|.+|  +|+++ 
T Consensus       173 ~~~tG~~~p~~---~i~~~~~~~g~~~ivDa~-q~~g~~~i--d~~------~~-~~D~~~~s~hK~~gp~G--~g~l~-  236 (408)
T d1t3ia_         173 SNTLGCVNPAE---EIAQLAHQAGAKVLVDAC-QSAPHYPL--DVQ------LI-DCDWLVASGHKMCAPTG--IGFLY-  236 (408)
T ss_dssp             CTTTCBBCCHH---HHHHHHHHTTCEEEEECT-TTTTTSCC--CHH------HH-TCSEEEEEGGGTTSCTT--CEEEE-
T ss_pred             cccccccCcHH---HHhhhhhccCceeeeccc-eecccccc--ccc------cc-CCceEEeccccccCCCC--ccccc-
Confidence            99999999977   566669999999999988 55544322  221      11 23577899999988777  57775 


Q ss_pred             ecCCHHHHhhhhhhhHHHHHHHHHhhc---------------------cCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238          319 VCSSSDLAARCCEVAVIQVKSQLKRLA---------------------RPMYSNPPVHGARIVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~l~~~~---------------------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l  377 (467)
                        ..++....            +....                     +.....++.....++..+++   +..  .-.+
T Consensus       237 --v~~~~~~~------------~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~---~~~--~~g~  297 (408)
T d1t3ia_         237 --GKEEILEA------------MPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVD---YLT--DLGM  297 (408)
T ss_dssp             --ECHHHHHH------------SCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHH---HHH--HHCH
T ss_pred             --cchhhhhc------------CCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHH---HHH--HcCH
Confidence              34444332            11100                     00111223333333333332   111  1124


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCccccc------CCcceE--EecCCCHHHHHHHHHcccEEEeCC----------
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL------RQIGMF--SFTGLNKAQSDNMTNKWHVYMTKD----------  439 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~------~~~g~f--~~~~l~~~~~~~ll~~~gI~v~~g----------  439 (467)
                      +++.++..+..+++.+.+. ..+.   +....      ..++..  .+.+.+.+.+...|+++||.+..|          
T Consensus       298 ~~i~~~~~~l~~~l~~~~~-~~~~---~~~~~~~~~~~~~~~iv~f~~~~~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~  373 (408)
T d1t3ia_         298 ENIHNYEVELTHYLWQGLG-QIPQ---LRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRL  373 (408)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TCTT---EEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhHHhhhhc-cCcc---ccccCCCccccCcceEEEEEeCCCCHHHHHHHHhhCCcEEecCcccccHHHHh
Confidence            5677777778888888887 5532   22221      223433  334667777666778889998754          


Q ss_pred             ----C--eEEeccC-ChhhHHHHHHHHHHHHHhcC
Q 012238          440 ----G--RISLAGL-SLAKCEYLADAIIDSYHNVS  467 (467)
Q Consensus       440 ----g--Ris~~~~-~~~~i~~~~~~l~~~l~~~~  467 (467)
                          |  |||++.. +.+|+++++++|+++++.++
T Consensus       374 ~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~f~  408 (408)
T d1t3ia_         374 FDASGSARASLYFYNTKEEIDLFLQSLQATIRFFS  408 (408)
T ss_dssp             TTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC
T ss_pred             hcCCccEEEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence                2  9998865 56999999999999998653

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.83  E-value=3.3e-18  Score=167.16  Aligned_cols=326  Identities=16%  Similarity=0.075  Sum_probs=212.5

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-C-----CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-G-----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~-----~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      .+++||+...|.   +... .|.++++..+.++. +     ...-++...-..+|.+.+|+++..        +..++  
T Consensus        45 ~~~~~FsSndYL---GL~~-~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~--------e~all--  110 (396)
T d2bwna1          45 QDITVWCGNDYL---GMGQ-HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK--------EAALV--  110 (396)
T ss_dssp             EEEEECSCSCTT---SGGG-CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC--------SEEEE--
T ss_pred             eEEEEEEccccc---CcCC-CHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCC--------Cceee--
Confidence            478999998884   3333 67788887777643 1     101122233467899999999643        34555  


Q ss_pred             cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC-CCCcEEEEe
Q 012238          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-PGGSFILLH  235 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~-~~~~~~i~i  235 (467)
                      .++|..|...+...+....+||.|+...-.+......++..+++++.++.       .|++.+++.++.. +.+.++|++
T Consensus       111 ~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~H-------nd~~~l~~l~~~~~~~~~~~iv~  183 (396)
T d2bwna1         111 FSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRH-------NDVAHLRELIAADDPAAPKLIAF  183 (396)
T ss_dssp             ESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECT-------TCHHHHHHHHHHSCTTSCEEEEE
T ss_pred             eecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhccccCceEeec-------chHHHhhhHHhhhcccCceeEEE
Confidence            57777777665334444568898888888888888889999999888765       4778887777653 356678888


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccce
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  315 (467)
                      ....+.+|.+.+.+   +|++++++||.++++||++.--..|.....  ....+--.....++++||||.+|..|   |+
T Consensus       184 egvySmdGd~apl~---~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G--~~~~~~~~~~~di~~gTlsKa~g~~G---g~  255 (396)
T d2bwna1         184 ESVYSMDGDFGPIK---EICDIAEEFGALTYIDEVHAVGMYGPRGAG--VAERDGLMHRIDIFNGTLAKAYGVFG---GY  255 (396)
T ss_dssp             ESBCTTTCCBCCHH---HHHHHHHHHTCEEEEECTTTTTTSSTTSCC--HHHHHTCGGGCSEEEEESSSTTCSCC---EE
T ss_pred             EeeccCcccccccH---hHHHHhhhhcceeeeccceeeeeecccccc--chhhcCCceeeeeeeecccccccccc---cc
Confidence            88888899999966   566669999999999999776555531111  11122112345788999999999876   77


Q ss_pred             EEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc-cC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          316 MNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM-YS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  393 (467)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~  393 (467)
                      +   +++++.++.            ++...++. ++ ..|+....++...+.   +..  ..+.++.+..+..+.+++.+
T Consensus       256 v---~~~~~~i~~------------l~~~~~~~ifStalpp~~~aa~~~al~---i~~--~~~~~~~r~~l~~~~~~~~~  315 (396)
T d2bwna1         256 I---AASARMVDA------------VRSYAPGFIFSTSLPPAIAAGAQASIA---FLK--TAEGQKLRDAQQMHAKVLKM  315 (396)
T ss_dssp             E---EECHHHHHH------------HHHHCHHHHTSBCCCHHHHHHHHHHHH---HHT--SHHHHHHHHHHHHHHHHHHH
T ss_pred             c---chhHHHHHH------------HHhhcchhhhcccCcHHHHHHHHHHHH---Hhh--cchHHHHHHHHHHHHHHHHH
Confidence            6   588888887            44443322 33 222222222222221   100  11234566777778888888


Q ss_pred             HhhhccCCCCCcccccCCcc-eEEecCCC---HHHHHHHHHcccEEEeCC-------C----eEEec-cCChhhHHHHHH
Q 012238          394 SLSAKDKSGKDWSFILRQIG-MFSFTGLN---KAQSDNMTNKWHVYMTKD-------G----RISLA-GLSLAKCEYLAD  457 (467)
Q Consensus       394 ~l~~~~g~~~~~~~~~~~~g-~f~~~~l~---~~~~~~ll~~~gI~v~~g-------g----Ris~~-~~~~~~i~~~~~  457 (467)
                      .+. ..|+    ......+. ..++++-.   .++.+++++++||++.+-       |    ||++. ..++++|+++++
T Consensus       316 ~l~-~~g~----~~~~~~spIvpv~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~  390 (396)
T d2bwna1         316 RLK-ALGM----PIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVH  390 (396)
T ss_dssp             HHH-HHTC----CBCCCSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHH
T ss_pred             HHH-hcCC----CcCCCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHH
Confidence            888 8874    33333332 23555542   234567787789987542       3    77765 348899999999


Q ss_pred             HHHHH
Q 012238          458 AIIDS  462 (467)
Q Consensus       458 ~l~~~  462 (467)
                      +|+++
T Consensus       391 ~L~~i  395 (396)
T d2bwna1         391 AMDLL  395 (396)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99875

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=9.8e-18  Score=165.23  Aligned_cols=325  Identities=10%  Similarity=0.067  Sum_probs=213.7

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC-------CCcchHHHHHHHHHHHhCCCCcccccCceee
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-------PIEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~-------~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      +.+.|||+...|.   +... .|.|+++..+.++... ..+.       ...-..+|.+.+|+++..        +.+++
T Consensus        44 G~~~l~f~s~dYL---Gl~~-hp~v~~a~~~a~~~~g-~~~~~sr~~~g~~~~~~~lE~~lA~~~g~--------e~al~  110 (401)
T d1fc4a_          44 GSHVINFCANNYL---GLAN-HPDLIAAAKAGMDSHG-FGMASVRFICGTQDSHKELEQKLAAFLGM--------EDAIL  110 (401)
T ss_dssp             SCEEEECCCSCTT---SCTT-CHHHHHHHHHHHHHHC-SCCCSCHHHHCCBHHHHHHHHHHHHHHTC--------SEEEE
T ss_pred             CCEEEEEEccccc---cccC-CHHHHHHHHHHHHHhC-CCcccceeeccCcHHHHHHHHHHHHhhcC--------CceEE
Confidence            3578999887763   3333 6778888777764311 1121       234467899999999643        46667


Q ss_pred             eecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHH---cCCCCcE
Q 012238          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK---AAPGGSF  231 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~~~  231 (467)
                        +++|+.|...+  +.....++|.|++..-.+..+..-+...+.++..++.       .|++.+++.++   .......
T Consensus       111 --~~SG~~An~~~--i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~-------~d~~~le~~~~~~~~~~~~~~  179 (401)
T d1fc4a_         111 --YSSCFDANGGL--FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHV  179 (401)
T ss_dssp             --ESCHHHHHHTT--HHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSE
T ss_pred             --ecchhhhhHHH--HHHhcCCCcEEEeCCcchHHHHccccccCceEEEEcC-------CChHHHHHHHHHhhhcccCce
Confidence              79999999887  4445679999999999999888888888888777654       45666665543   3345566


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEecCccCcccCC
Q 012238          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYA  310 (467)
Q Consensus       232 ~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G  310 (467)
                      ++++.+..+..|...+.   .+|.++|++||+++|+||++.....+..   ...+..... ..+..+++.|++|.++  |
T Consensus       180 liv~egv~s~~G~~~~L---~~l~~L~~~~~a~LivDeah~~g~~g~~---G~G~~~~~~~~~~~dii~~tl~Ka~g--g  251 (401)
T d1fc4a_         180 LIATDGVFSMDGVIANL---KGVCDLADKYDALVMVDDSHAVGFVGEN---GRGSHEYCDVMGRVDIITGTLGKALG--G  251 (401)
T ss_dssp             EEEEESEETTTTEECCH---HHHHHHHHHTTEEEEEECTTTTTTSSTT---SCCHHHHTTCTTCCSEEEEESSSTTC--S
T ss_pred             EEEEcCCCCCCCchhhh---hHHHHHHhhcCcEEEehhhhccccccCC---CCccchhccCCCCCeEEEeecccccc--c
Confidence            77777777777877774   4666679999999999999887776631   112222222 3345688999999994  3


Q ss_pred             CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc-cC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238          311 ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM-YS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  388 (467)
Q Consensus       311 ~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r  388 (467)
                      ...|++   +++.++++.            ++...+.. ++ ..++....++...+..       .....+.+++++++.
T Consensus       252 ~~Gg~v---~g~~~~~~~------------l~~~~~~~~~s~~l~p~~~~aa~~~l~~-------~~~~~~~~~~l~~~~  309 (401)
T d1fc4a_         252 ASGGYT---AARKEVVEW------------LRQRSRPYLFSNSLAPAIVAASIKVLEM-------VEAGSELRDRLWANA  309 (401)
T ss_dssp             SSCEEE---EECHHHHHH------------HHHHCHHHHHSCCCCHHHHHHHHHHHHH-------HHTCHHHHHHHHHHH
T ss_pred             CCcccc---cCCHHHHHH------------HHcCChhhhhcCCCCHHHHHHHHhhhcc-------cccCHHHHHHHHHHH
Confidence            333666   588988887            43322221 22 2333332333333221       112346778888888


Q ss_pred             HHHHHHhhhccCCCCCcccccCCcceE-EecCCC---HHHHHHHHHcccEEEeC-------CC----eEEec-cCChhhH
Q 012238          389 QKLFDSLSAKDKSGKDWSFILRQIGMF-SFTGLN---KAQSDNMTNKWHVYMTK-------DG----RISLA-GLSLAKC  452 (467)
Q Consensus       389 ~~l~~~l~~~~g~~~~~~~~~~~~g~f-~~~~l~---~~~~~~ll~~~gI~v~~-------gg----Ris~~-~~~~~~i  452 (467)
                      +++.+.+. ..+.    ....+++... ++++-.   .++.++|++ +||++.+       -|    ||++. ..++++|
T Consensus       310 ~~~~~~l~-~~g~----~~~~~~~pIv~v~~~~~~~a~~~~~~L~~-~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edI  383 (401)
T d1fc4a_         310 RQFREQMS-AAGF----TLAGADHAIIPVMLGDAVVAQKFARELQK-EGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQI  383 (401)
T ss_dssp             HHHHHHHH-HTTC----CBCCSSSSEEEEEEECHHHHHHHHHHHHH-TTEECCEECTTSSCTTCEEEEEECCTTCCHHHH
T ss_pred             HHHHhhhc-ccCC----ccCCCCCCEEEEEECCHHHHHHHHHHHHH-CCceEEeECCCCCCCCCceEEEEECCCCCHHHH
Confidence            88999998 7773    3444444432 444432   234566665 5999753       23    88874 4588999


Q ss_pred             HHHHHHHHHHHHhc
Q 012238          453 EYLADAIIDSYHNV  466 (467)
Q Consensus       453 ~~~~~~l~~~l~~~  466 (467)
                      ++++++|+++.+++
T Consensus       384 d~~v~al~ev~~~l  397 (401)
T d1fc4a_         384 TRAVEAFTRIGKQL  397 (401)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999876

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.80  E-value=1.6e-18  Score=164.67  Aligned_cols=317  Identities=12%  Similarity=-0.024  Sum_probs=194.3

Q ss_pred             hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEE
Q 012238          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI  182 (467)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv  182 (467)
                      +|.|++|+.+..... ...|++..+.+++|+.+|++++..      +++|++  |+|||+++.++  +.....+++.+++
T Consensus        13 ~P~v~eAl~~~~~~~-~~~y~~~~~~~~lr~~ia~~~g~~------~~~v~~--tsggtean~~a--~~~~~~~~~~~~~   81 (340)
T d1svva_          13 HPKILDLMARDNMTQ-HAGYGQDSHCAKAARLIGELLERP------DADVHF--ISGGTQTNLIA--CSLALRPWEAVIA   81 (340)
T ss_dssp             CHHHHHHHHHHTTCC-CCSTTCSHHHHHHHHHHHHHHTCT------TSEEEE--ESCHHHHHHHH--HHHHCCTTEEEEE
T ss_pred             CHHHHHHHHHHhhcC-CCCCCCCHHHHHHHHHHHHHhCCC------cceEEE--cCCHHHHHHHH--HHHHhhhcccccc
Confidence            788999998875443 477888889999999999997643      678999  99999999987  5556679999999


Q ss_pred             cCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 012238          183 SSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ  259 (467)
Q Consensus       183 ~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~  259 (467)
                      ..+.+..+.......+.....+... ......+.+...+.....   ......++++...|++|.+...+++..+.+.|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (340)
T d1svva_          82 TQLGHISTHETGAIEATGHKVVTAP-CPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCK  160 (340)
T ss_dssp             ETTSHHHHSSTTHHHHTTCCEEEEC-CTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHH
T ss_pred             ccccceeeeecccccccceeeeecc-cccccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccc
Confidence            9988866544333223333333332 222334444444443321   123344444555566788889999999999999


Q ss_pred             hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHH
Q 012238          260 EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKS  339 (467)
Q Consensus       260 ~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~  339 (467)
                      ++|.++++|++|........ ...........  ...+...+..|..  .+.+.++..   ........        ...
T Consensus       161 ~~g~~~~~d~a~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~--------~~~  224 (340)
T d1svva_         161 EHGLYLFLDGARLASALSSP-VNDLTLADIAR--LTDMFYIGATKAG--GMFGEALII---LNDALKPN--------ARH  224 (340)
T ss_dssp             HHTCEEEEECTTHHHHHTST-TCCCCHHHHHH--HCSEEEEECTTTT--CSSCEEEEE---CSGGGCTT--------HHH
T ss_pred             cccceeeeeccceeeeeccc-ccccccccccc--cceeeecCCcccc--ccccccccc---cchhhhhh--------hhh
Confidence            99999999999854322111 11111111111  1234444444444  334445553   44433333        111


Q ss_pred             HHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecC
Q 012238          340 QLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTG  419 (467)
Q Consensus       340 ~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~  419 (467)
                      .  ................++...+....        .....++..++++++.+.++ +.|    +.+..|..+.++|..
T Consensus       225 ~--~~~~~~~~~~~~~~~aa~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~-~~g----~~~~~p~~~~~v~~~  289 (340)
T d1svva_         225 L--IKQRGALMAKGWLLGIQFEVLMKDNL--------FFELGAHSNKMAAILKAGLE-ACG----IRLAWPSASNQLFPI  289 (340)
T ss_dssp             H--HHHTTCCCTTTHHHHHHHHHHTSTTH--------HHHHHHHHHHHHHHHHHHHH-HTT----CCBSSCCSSSEECBE
T ss_pred             h--cccccCccchhhHHHHHHHHHhhhhH--------HHHHHHHHHHHHhhhHHHHh-cCC----CeeecCCCceEEEEe
Confidence            1  11111122223333333333444332        23455666777888888998 887    466666667788888


Q ss_pred             CCHHHHHHHHHc---ccEEEeCCC----eEEecc-CChhhHHHHHHHHHHH
Q 012238          420 LNKAQSDNMTNK---WHVYMTKDG----RISLAG-LSLAKCEYLADAIIDS  462 (467)
Q Consensus       420 l~~~~~~~ll~~---~gI~v~~gg----Ris~~~-~~~~~i~~~~~~l~~~  462 (467)
                      ++.+...+++++   .++.+.+.|    |||++. .++++|++++++|+++
T Consensus       290 ~~~~~~~~l~~~~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~l  340 (340)
T d1svva_         290 LENTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRL  340 (340)
T ss_dssp             EEHHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHhhhhhcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            888777777765   345556665    887652 2789999999999863

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.78  E-value=6.1e-18  Score=161.98  Aligned_cols=329  Identities=14%  Similarity=-0.017  Sum_probs=200.0

Q ss_pred             CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (467)
Q Consensus        83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (467)
                      ++.+||+.-.+     .+ .+|.|++|+.+.... ....|.+.....++|+.+|+++..       +..+++  |+|||+
T Consensus         2 ~~~~~f~s~n~-----~g-~~P~v~~A~~~a~~~-~~~~~~~~~~~~~l~~~la~~~g~-------~~~v~f--~~sGt~   65 (345)
T d1v72a1           2 PPALGFSSDNI-----AG-ASPEVAQALVKHSSG-QAGPYGTDELTAQVKRKFCEIFER-------DVEVFL--VPTGTA   65 (345)
T ss_dssp             CCCCBCSCGGG-----CC-CCHHHHHHHHHTTSS-CCCSTTCSHHHHHHHHHHHHHHTS-------CCEEEE--ESCHHH
T ss_pred             CCCcCcCCCCC-----CC-CCHHHHHHHHHHhcc-CccccCCCHHHHHHHHHHHHHHCC-------CcEEEE--CCchHH
Confidence            45677775333     23 378899999886543 346788888999999999999743       346777  899999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchH---HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC----CCcEEEEe
Q 012238          163 SLRLAAALIERYFPGAKVLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP----GGSFILLH  235 (467)
Q Consensus       163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~----~~~~~i~i  235 (467)
                      |+..+  +...+.+++.+++....+..+.   ......+..+..++.  ...+..+++.+++.+....    .....++.
T Consensus        66 An~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  141 (345)
T d1v72a1          66 ANALC--LSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVD--GPAAKLDIVRLRERTREKVGDVHTTQPACVS  141 (345)
T ss_dssp             HHHHH--HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECC--CGGGCCCHHHHHHHTTSSTTCTTSCEEEEEE
T ss_pred             HHHHH--HHHHHhcCCccccccccceeeechhhHHHhcCcccccccc--cccccccHHHhhhhhcccccccccccceeee
Confidence            99987  4444557777777665543322   233445555555443  4456789999999987531    22345666


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccce
Q 012238          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (467)
Q Consensus       236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  315 (467)
                      +++.|++|...+.++++++.++|++||+++++|+++..........+ ... ..... .......+..|..+..   .|.
T Consensus       142 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~-~~~~~-~~~~~~~~~~~~~~~~---~~~  215 (345)
T d1v72a1         142 ITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS-PAE-MTWKA-GVDALSFGATKNGVLA---AEA  215 (345)
T ss_dssp             EESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC-TTT-TTGGG-TCCEEEECCGGGTCSS---CEE
T ss_pred             eeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccC-HHH-hhccc-cccccccCcccccccc---ccc
Confidence            77889999999999999999999999999999999754322100000 000 00111 2233344444433322   223


Q ss_pred             EEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012238          316 MNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL  395 (467)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l  395 (467)
                      ..  .........        ... . ................++...+.+..        ..+...+..++...+.+.+
T Consensus       216 ~~--~~~~~~~~~--------~~~-~-~~~~~~~~~~~~~aa~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l  275 (345)
T d1v72a1         216 IV--LFNTSLATE--------MSY-R-RKRAGHLSSKMRFLSAQIDAYLTDDL--------WLRNARKANAAAQRLAQGL  275 (345)
T ss_dssp             EE--ESSGGGHHH--------HHH-H-HHHTTCCCSSTHHHHHHHHHHTSTTH--------HHHHHHHHHHHHHHHHHHH
T ss_pred             cc--cchhhhhhh--------ccc-c-ccccccccchhhHHhhhhHHHHHHhh--------hhhhccchhhHHHHHHHHH
Confidence            32  233333222        111 1 11111122222222223333333321        2234444555666677777


Q ss_pred             hhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCC--C----eEEeccC-ChhhHHHHHHHHHHH
Q 012238          396 SAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKD--G----RISLAGL-SLAKCEYLADAIIDS  462 (467)
Q Consensus       396 ~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~g--g----Ris~~~~-~~~~i~~~~~~l~~~  462 (467)
                      . +++.   +.+..|..+.++|+.+..+.++.|+++ ||.+..+  |    ||+++.. ++|++++++++|+++
T Consensus       276 ~-~~~g---~~~~~p~~~niv~~~~~~~~~~~L~~~-gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         276 E-GLGG---VEVLGGTEANILFCRLDSAMIDALLKA-GFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             T-TCTT---EEEESCCCSSEEEEEECHHHHHHHHHT-TCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             H-hcCC---cEeccCCCccEEEEEcCHHHHHHHHHc-CCCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            7 6542   566666667788888888888888875 8877543  2    8887643 789999999999875

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.9e-17  Score=161.45  Aligned_cols=333  Identities=11%  Similarity=0.099  Sum_probs=199.9

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC--CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+=|+-|       +..+++.|++++....   ..+ ..+  ..-+.+.|+.+++++....     +..|++  +.|||
T Consensus        19 ~~~l~~pG-------P~~~~~~Vl~am~~~~---i~H-Rs~~f~~i~~ea~~~l~~llg~~~-----~~~ii~--~gsgT   80 (388)
T d1h0ca_          19 NQLLLGPG-------PSNLPPRIMAAGGLQM---IGS-MSKDMYQIMDEIKEGIQYVFQTRN-----PLTLVI--SGSGH   80 (388)
T ss_dssp             CCEECSSS-------CCCCCHHHHHHHTCCC---CCT-TSHHHHHHHHHHHHHHHHHHTCCC-----SEEEEE--SSCHH
T ss_pred             cCccccCC-------CCCCCHHHHHHhCcCC---CCC-CCHHHHHHHHHHHHHHHHHhCCCC-----CcEEEE--cCcHH
Confidence            44556654       2345888988874321   111 111  2346888999999976542     235766  89999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcch--HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~  239 (467)
                      ++++.+  +...+.+|++|++...++...  .......+..+..++.  +....+|.+.+++.+..  .+++++++++.+
T Consensus        81 ~a~~~~--i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~  154 (388)
T d1h0ca_          81 CALEAA--LVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTK--DPGGHYTLQEVEEGLAQ--HKPVLLFLTHGE  154 (388)
T ss_dssp             HHHHHH--HHHHCCSSCCEEECBSSHHHHHHHHHHHHHC--CBCCBC--CTTCCCCHHHHHHHHHH--HCCSEEEEESEE
T ss_pred             HHHHHH--HHHhhccCCceeeecccceeeeecccccccccccccccc--CCccccchHHHHHHhcc--CCcceEEEeeee
Confidence            999998  566678999999999887644  3344566777776665  44567899999888775  456688889999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (467)
Q Consensus       240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (467)
                      |.||.+.+.+   +|.++|+++|+++++|.+ +.+.....+.+.+         ...+++.|..|.++.|+ .+|+++  
T Consensus       155 n~tG~i~pi~---~i~~~~~~~g~~~~vD~~-qs~g~~~~d~~~~---------~~D~~~~s~~K~~~gp~-g~~~~~--  218 (388)
T d1h0ca_         155 SSTGVLQPLD---GFGELCHRYKCLLLVDSV-ASLGGTPLYMDRQ---------GIDILYSGSQKALNAPP-GTSLIS--  218 (388)
T ss_dssp             TTTTEECCCT---THHHHHHTTTCEEEEECT-TTTTTSCCCTTTT---------TCSEEEEESSSTTCCCT-TCEEEE--
T ss_pred             eccccccCHH---HHHHHhhcccccceeccc-ccccccccccccc---------ccceecccccccccCCC-ceEEEe--
Confidence            9999998876   666679999999999998 4443322222222         22355666666664443 245554  


Q ss_pred             cCCHHHHhhhh----hh--hHHHHHHHHHh-----hccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238          320 CSSSDLAARCC----EV--AVIQVKSQLKR-----LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  388 (467)
Q Consensus       320 ~~~~~~~~~~~----~~--~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r  388 (467)
                       ..++.++...    .+  .+.........     ..+.....++.....+...++.   +  ..+..++.+.++.++..
T Consensus       219 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~---~--~~~~g~~~~~~~~~~l~  292 (388)
T d1h0ca_         219 -FSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLA---L--IAEQGLENSWRQHREAA  292 (388)
T ss_dssp             -ECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHH---H--HHHHCHHHHHHHHHHHH
T ss_pred             -ecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHH---H--HHHhccccccccccchh
Confidence             4444444300    00  00000000000     0111111233332222222221   1  11223567777888888


Q ss_pred             HHHHHHhhhccCCCCCcccccC-----Ccce--EEec-CCCH-HHHHHHHHcccEEEeCC-----C---eEE-ecc-CCh
Q 012238          389 QKLFDSLSAKDKSGKDWSFILR-----QIGM--FSFT-GLNK-AQSDNMTNKWHVYMTKD-----G---RIS-LAG-LSL  449 (467)
Q Consensus       389 ~~l~~~l~~~~g~~~~~~~~~~-----~~g~--f~~~-~l~~-~~~~~ll~~~gI~v~~g-----g---Ris-~~~-~~~  449 (467)
                      +++++.+. ..|.    ....+     ..+.  |.+. +.+. ++...+++++||.+..|     |   ||| ++. .+.
T Consensus       293 ~~l~~~~~-~~g~----~~~~~~~~~rs~~i~~~~~p~~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~  367 (388)
T d1h0ca_         293 AYLHGRLQ-ALGL----QLFVKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATR  367 (388)
T ss_dssp             HHHHHHHH-HHTC----CBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSH
T ss_pred             HHHHHHHh-hcCc----ccccCCHHHcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCH
Confidence            88888888 7764    11111     1122  2222 4555 45677888889999876     2   999 653 367


Q ss_pred             hhHHHHHHHHHHHHHhcC
Q 012238          450 AKCEYLADAIIDSYHNVS  467 (467)
Q Consensus       450 ~~i~~~~~~l~~~l~~~~  467 (467)
                      +++++++++|+++++++.
T Consensus       368 edid~li~aL~~~L~~l~  385 (388)
T d1h0ca_         368 ENVDRVTEALRAALQHCP  385 (388)
T ss_dssp             HHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            899999999999999863

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.74  E-value=5.7e-16  Score=154.85  Aligned_cols=304  Identities=13%  Similarity=0.078  Sum_probs=192.8

Q ss_pred             CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCC
Q 012238          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV  199 (467)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~  199 (467)
                      ..|.......+|.+.+|+++..        +.+++  +++|+.|..++  +...+.|||.|+.... |......+...|+
T Consensus        69 d~Y~~dpt~~~lE~~~a~l~G~--------e~al~--~~SGt~An~~a--~~~l~~~Gd~Vi~~~~-f~~~~~~i~~~g~  135 (456)
T d1c7ga_          69 EAYAGSENFYHLEKTVKELFGF--------KHIVP--THQGRGAENLL--SQLAIKPGQYVAGNMY-FTTTRFHQEKNGA  135 (456)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHCC--------SEEEE--ESSHHHHHHHH--HHHHCCTTEEEEESSC-CHHHHHHHHHTTE
T ss_pred             hhccCCchHHHHHHHHHHHhCC--------CeEEE--CCCHHHHHHHH--HHHhcCCCCeEecCcc-hHHHHHHHHHcCc
Confidence            5798888999999999999654        35666  89999999997  5556789998886654 4444445567788


Q ss_pred             CeEEeeee--------cCCCCCCChhhHHHHHHcCC-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEec
Q 012238          200 PWSEYRYY--------DPKTVGLDFEGMIADIKAAP-GGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDV  269 (467)
Q Consensus       200 ~~~~v~~~--------~~~~~~~d~~~l~~~l~~~~-~~~~~i~i~~p~NPT-G~~~~~~~l~~l~~~~~~~~~~li~De  269 (467)
                      .++.+...        +...+.+|++.+++.+++.. ....++++.+++|+. |..++.+++++|.++|++||+.++.|+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~  215 (456)
T d1c7ga_         136 TFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDA  215 (456)
T ss_dssp             EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred             eeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEc
Confidence            77765432        12356789999999998643 455688889999987 677899999999999999999999999


Q ss_pred             cCCC----------CCCCCCCCChhHH-HHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHH
Q 012238          270 AYQG----------FASGSLDNDASSV-RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVK  338 (467)
Q Consensus       270 ay~~----------~~~~~~~~~~~~~-~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~  338 (467)
                      +...          ..+.+  .....+ +....  .-.++..|++|.++.++  -|++.  +.++++.++        .+
T Consensus       216 a~~~~~a~~~~~~~~~~~~--~~i~~i~~~~~~--~ad~~s~s~~K~~~~~~--GG~i~--~~~~~l~~~--------~r  279 (456)
T d1c7ga_         216 TRCVENAYFIKEQEAGYEN--VSIKDIVHEMFS--YADGCTMSGKKDCLVNI--GGFLC--MNDEEMFSA--------AK  279 (456)
T ss_dssp             TTHHHHHHHHHHHSTTCTT--SCHHHHHHHHHT--TCSEEEEETTTTTCCSS--CEEEE--ESCHHHHHH--------HH
T ss_pred             chhhcchhhhcccccccCC--CChhhhcccccc--ccccEEEeccccccccc--eeEEE--cCCHHHHHH--------HH
Confidence            8431          01111  111111 11111  22366779999998653  25553  678887776        33


Q ss_pred             HHHHhhccC-ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEe
Q 012238          339 SQLKRLARP-MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF  417 (467)
Q Consensus       339 ~~l~~~~~~-~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~  417 (467)
                      ......... ...+.......+++..+... ..       .+..++-.++.++|.+.|. +.|+    .+..+.++..++
T Consensus       280 ~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~-~~-------~~~l~~r~~~~~~L~e~L~-~~g~----~vv~p~g~~~v~  346 (456)
T d1c7ga_         280 ELVVVYEGMPSYGGLAGRDMEAMAIGLREA-MQ-------YEYIEHRVKQVRYLGDKLR-EAGV----PIVEPTGGHAVF  346 (456)
T ss_dssp             HHHHHHTCCTTTTTCCHHHHHHHHHHHHHH-TC-------HHHHHHHHHHHHHHHHHHH-HTTC----CBCSSCCSSEEE
T ss_pred             HhccccCCCcccchhhHHHHHHHHHHHHHh-cC-------HHHHHHHHHHHHHHHHHHH-hccC----CcccCCCCccee
Confidence            322111111 12233333222222222110 00       1112222344567888888 8774    555666665554


Q ss_pred             cC-------C------CHHHHHHHHHcccEEEeCC-----------C----------eEEecc--CChhhHHHHHHHHHH
Q 012238          418 TG-------L------NKAQSDNMTNKWHVYMTKD-----------G----------RISLAG--LSLAKCEYLADAIID  461 (467)
Q Consensus       418 ~~-------l------~~~~~~~ll~~~gI~v~~g-----------g----------Ris~~~--~~~~~i~~~~~~l~~  461 (467)
                      ++       +      ..+++..++.+.||...+.           |          |+++..  .+++++++++++|++
T Consensus       347 vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~  426 (456)
T d1c7ga_         347 LDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIK  426 (456)
T ss_dssp             EEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred             EechhhccCCCcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHH
Confidence            32       1      1244556666679865432           1          888762  478999999999999


Q ss_pred             HHHh
Q 012238          462 SYHN  465 (467)
Q Consensus       462 ~l~~  465 (467)
                      +.++
T Consensus       427 v~~~  430 (456)
T d1c7ga_         427 LYQH  430 (456)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            9864

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=1.3e-16  Score=154.20  Aligned_cols=318  Identities=15%  Similarity=0.061  Sum_probs=191.8

Q ss_pred             CCCCchHHHHHHHHHHHhcCCCCcCCC--CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhC
Q 012238           98 LQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF  175 (467)
Q Consensus        98 ~~p~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~  175 (467)
                      |+..+++.|++++....   . ..+.+  ..-..+.|+.+++++...      .+-+++  +.|||++++.+  +...+.
T Consensus         7 GP~~v~~~V~~am~~~~---~-~hr~~~f~~i~~~~~~~l~~ll~~~------~~~i~~--~gsgT~a~e~~--~~nl~~   72 (348)
T d1iuga_           7 GPVRLHPKALEALARPQ---L-HHRTEAAREVFLKARGLLREAFRTE------GEVLIL--TGSGTLAMEAL--VKNLFA   72 (348)
T ss_dssp             SSCCCCHHHHHHHHSCC---C-CTTSHHHHHHHHHHHHHHHHHHTCS------SEEEEE--ESCHHHHHHHH--HHHHCC
T ss_pred             CCCCCCHHHHHHhcCCC---C-CCCCHHHHHHHHHHHHHHHHHhCCC------CCEEEE--eCchHHHHHHH--HHhccc
Confidence            33446889988875432   1 11211  123566777777776532      344555  89999999998  666778


Q ss_pred             CCCEEEEcCCCCc--chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 012238          176 PGAKVLISSPTWG--NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (467)
Q Consensus       176 ~gd~Vlv~~P~y~--~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~  253 (467)
                      +||+|++..-++.  .+...++.+|.++..+..  +.+..++++...      ..+...+++++..+.||...+.+++  
T Consensus        73 ~g~~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~--~~g~~~~~~~~~------~~~~~~v~~~h~eTstG~~~~i~~i--  142 (348)
T d1iuga_          73 PGERVLVPVYGKFSERFYEIALEAGLVVERLDY--PYGDTPRPEDVA------KEGYAGLLLVHSETSTGALADLPAL--  142 (348)
T ss_dssp             TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCTTTSC------CSSCSEEEEESEETTTTEECCHHHH--
T ss_pred             ccccceeecchHHHHHHHHHHHhcCcccccccc--cCCCcccccccc------ccCCCeeEEEecchhhhhhccHHHH--
Confidence            9999999887753  456677888988888776  334445554431      1455677788889999999998755  


Q ss_pred             HHHHHHhcC--CeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc-ccCCCccceEEEecCCHHHHhhhh
Q 012238          254 IADVIQEKN--HIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARCC  330 (467)
Q Consensus       254 l~~~~~~~~--~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~  330 (467)
                       .++|++++  .++++|.+ +.+.....+.+.+.         -.+++.|-.|.+ |+||+  |.++   .+++.+++..
T Consensus       143 -~~~~~~~~~~~l~~vDav-ss~g~~~i~~d~~~---------iD~~~~~sqK~l~gppG~--~~v~---~s~~~le~~~  206 (348)
T d1iuga_         143 -ARAFKEKNPEGLVGADMV-TSLLVGEVALEAMG---------VDAAASGSQKGLMCPPGL--GFVA---LSPRALERLK  206 (348)
T ss_dssp             -HHHHHHHCTTCEEEEECT-TTBTTBCCCSGGGT---------CSEEEEESSSTTCCCSCE--EEEE---ECHHHHHTCC
T ss_pred             -HHHHHhhhccceeechhh-hccccccccccccc---------CCEEEeccccceecCCce--eeee---echHHHhhhc
Confidence             55587764  78888988 44444334444432         246677778877 88884  7775   5566666421


Q ss_pred             hh-hHHHHHHHHHhhccCc-cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc
Q 012238          331 EV-AVIQVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  408 (467)
Q Consensus       331 ~~-~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~  408 (467)
                      .. .+.++...+....... ...++.....++..+|+.  +.    ++..+..++.+..+..+++.++ ..|+    ...
T Consensus       207 ~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~--~~----~~~~~~~~~~~~~~~~~~~~~~-~~gl----~~~  275 (348)
T d1iuga_         207 PRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEE--VL----PRLEEHLALKAWQNALLYGVGE-EGGL----RPV  275 (348)
T ss_dssp             CCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH--HG----GGHHHHHHHHHHHHHHHHHHHH-HTTC----EES
T ss_pred             ccccccchhhhhhhhccCcccccccchHHHHHHHHHHH--HH----HHHhHHHHHHHHHHHHHhhhhh-hhhh----ccC
Confidence            11 1223333333222222 224444444455545431  11    1122233333444455555555 6554    222


Q ss_pred             c----CCcceEEec-CCCHHHHHHHHHcccEEEeCC-----C---eEE-eccCChhhHHHHHHHHHHHHHhc
Q 012238          409 L----RQIGMFSFT-GLNKAQSDNMTNKWHVYMTKD-----G---RIS-LAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       409 ~----~~~g~f~~~-~l~~~~~~~ll~~~gI~v~~g-----g---Ris-~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +    +.-.-|.+. +++.+.+...++++||.+.+|     |   ||+ ++..+.+++++++++|+++++++
T Consensus       276 ~~~~s~~v~~~~~P~g~~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~  347 (348)
T d1iuga_         276 PKRFSPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI  347 (348)
T ss_dssp             CSSBCTTCEEEECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCeEEEEECCCCCCHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            1    111112222 567666666777789999887     2   886 45568899999999999999986

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.71  E-value=7.6e-15  Score=141.97  Aligned_cols=283  Identities=15%  Similarity=0.119  Sum_probs=188.5

Q ss_pred             CcCCC--CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----
Q 012238          120 KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----  193 (467)
Q Consensus       120 ~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~----  193 (467)
                      ..|.-  .+....|.+.++++..+.        ..++  +++|+.|+..+  ++..+.+||+|+++...|......    
T Consensus        55 ~~Y~R~~nPT~~~LE~~la~LEgg~--------~a~~--~sSGmaAi~~~--l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~  122 (397)
T d1y4ia1          55 YIYTRLGNPTTDALEKKLAVLERGE--------AGLA--TASGISAITTT--LLTLCQQGDHIVSASAIYGCTHAFLSHS  122 (397)
T ss_dssp             SCCCTTSCHHHHHHHHHHHHHHTCS--------EEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESSSCHHHHHHHHTH
T ss_pred             ceeeCCCCHHHHHHHHHHHHHhCCc--------ccee--ehHHHHHHHHH--HhhccCCCCeeeeecccccccchhhhcc
Confidence            44542  445678888888885442        3444  69999999887  677789999999999999765554    


Q ss_pred             HhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC
Q 012238          194 FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (467)
Q Consensus       194 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~  273 (467)
                      +...|+++..++.       -|++.++++++   +++++|++-+|.|||..+.+.+   +|+++|+++|+++++|..|..
T Consensus       123 l~~~Gi~~~~vd~-------~d~~~~~~~i~---~~Tklv~~Esp~NP~l~v~Di~---~i~~iA~~~gi~~vvDnT~at  189 (397)
T d1y4ia1         123 MPKFGINVRFVDA-------GKPEEIRAAMR---PETKVVYIETPANPTLSLVDIE---TVAGIAHQQGALLVVDNTFMS  189 (397)
T ss_dssp             HHHTTCEEEEECT-------TSHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHH---HHHHHHHHTTCEEEEECTTTC
T ss_pred             cCCCceEeeccCC-------CCHHHHHHhcC---CCCcEEEecCCcccceeecccH---HHHHHhhcCCceEEecCcccC
Confidence            4578988888754       47899999987   7899999999999999988866   677779999999999999765


Q ss_pred             CCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCc
Q 012238          274 FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPP  353 (467)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  353 (467)
                      ...-    .  ++    +.+ -.|++.|.+|.++-.+--+|.++  +++.+.+.+        .+  +...+......++
T Consensus       190 P~~~----~--Pl----~~G-aDivihS~TKyi~Ghsdvl~G~v--~~~~~~~~~--------~r--~~~~~~~~G~~l~  246 (397)
T d1y4ia1         190 PYCQ----Q--PL----QLG-ADIVVHSVTKYINGHGDVIGGII--VGKQEFIDQ--------AR--FVGLKDITGGCMS  246 (397)
T ss_dssp             TTTC----C--GG----GGT-CSEEEEETTTTTTCSSCCCCEEE--EECHHHHHH--------HH--HTHHHHTTCCCCC
T ss_pred             cccC----c--ch----hcC-CCEEEEehhhhcCCCcceeeecc--CCCHHHHHH--------HH--HHHHHhCcCCcCC
Confidence            4322    1  11    222 34889999999987887788875  466666554        11  2222333345666


Q ss_pred             hHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC------CCCcc----------cccCCcceEEe
Q 012238          354 VHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS------GKDWS----------FILRQIGMFSF  417 (467)
Q Consensus       354 ~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~------~~~~~----------~~~~~~g~f~~  417 (467)
                      +.....+..-|+.          +..+.++..++...+.+.|+ +...      |+ +.          .....||++.|
T Consensus       247 p~~a~l~~rgl~T----------L~lRm~~~~~nA~~lA~~L~-~hp~V~~V~yPg-l~s~p~h~~~~~~~~g~gg~~sf  314 (397)
T d1y4ia1         247 PFNAWLTLRGVKT----------LGIRMERHCENALKIARFLE-GHPSITRVYYPG-LSSHPQYELGQRQMSLPGGIISF  314 (397)
T ss_dssp             HHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHH-TCTTEEEEECTT-STTCTTHHHHHHHCSSCCSEEEE
T ss_pred             HHHHHHHHcCcCc----------HHHHHHHHHHHHHHHHHHHH-hCCCcCeEeCCC-CCCCccccccccccCCCCeEEEE
Confidence            6766666655554          33444555666777777777 4321      11 10          11124676665


Q ss_pred             c-CCCHHHHHHHHHcccEEE---eCC-------------------------C------eEEeccCChhhHHHHHHHHHHH
Q 012238          418 T-GLNKAQSDNMTNKWHVYM---TKD-------------------------G------RISLAGLSLAKCEYLADAIIDS  462 (467)
Q Consensus       418 ~-~l~~~~~~~ll~~~gI~v---~~g-------------------------g------Ris~~~~~~~~i~~~~~~l~~~  462 (467)
                      . .-+.+...++++.-.++-   .-|                         |      |||++.   |+.+.+++-|+++
T Consensus       315 ~~~~~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGl---Ed~~DLi~Dl~~A  391 (397)
T d1y4ia1         315 EIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGL---EDPEDIINDLEHA  391 (397)
T ss_dssp             EETTHHHHHHHHHHTCSSSEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHH
T ss_pred             EecCCHHHHHHHHHcCCccceeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEecc---CCHHHHHHHHHHH
Confidence            3 223444556665433221   111                         2      999997   5667777777777


Q ss_pred             HHh
Q 012238          463 YHN  465 (467)
Q Consensus       463 l~~  465 (467)
                      ++.
T Consensus       392 L~~  394 (397)
T d1y4ia1         392 IRK  394 (397)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.71  E-value=6.7e-16  Score=149.89  Aligned_cols=322  Identities=13%  Similarity=0.034  Sum_probs=183.0

Q ss_pred             CchHHHHHHHHHHHhcCCCCcCC--CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCC
Q 012238          101 YVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA  178 (467)
Q Consensus       101 ~~~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd  178 (467)
                      ++++.|++++....    ...+.  ...-..+.|+.++++++..      +++..++.+.|||++++.+  +.....+++
T Consensus        10 ~~~~~V~~A~~~~~----~~~~~~~~~~~~~~~r~~l~~l~~~~------~~~~~i~~t~s~T~~~~~~--~~~l~~~~~   77 (361)
T d1m32a_          10 TTSRTVKEAMLFDS----CTWDDDYNIGVVEQIRQQLTALATAS------EGYTSVLLQGSGSYAVEAV--LGSALGPQD   77 (361)
T ss_dssp             CCCHHHHHTTCCCC----CTTSHHHHTTTHHHHHHHHHHHHCSS------SSEEEEEEESCHHHHHHHH--HHHSCCTTC
T ss_pred             CCCHHHHHHhhhhc----cCCCcHHHHHHHHHHHHHHHHHhCCC------CCCEEEEECCCHHHHHHHH--HHHhhhhcc
Confidence            45788887753321    11111  1345688999999998654      4443233388999999997  444556788


Q ss_pred             EEEEcCCCCcc--hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012238          179 KVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (467)
Q Consensus       179 ~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~  256 (467)
                      .+++....+..  .....+..+.....+....  ....+.+....... ..++++++.++..+|-||...+.+   +|.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~tG~~~~i~---~i~~  151 (361)
T d1m32a_          78 KVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE--VARPDVQAIDAILN-ADPTISHIAMVHSETTTGMLNPID---EVGA  151 (361)
T ss_dssp             CEEEEESSHHHHHHHHHHHHHTCCEEEEECCT--TSCCCHHHHHHHHH-HCTTCCEEEEESEETTTTEECCHH---HHHH
T ss_pred             ccceeeehhhhhhHHHHhhhhhcccccccccc--cCCccchhhHHHHH-hccCccceEEEeeecccccchhhh---hhhh
Confidence            77777665532  3334455666666655532  22233322222221 126788899999999999999876   5666


Q ss_pred             HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc-ccCCCccceEEEecCCHHHHhhhhhh---
Q 012238          257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARCCEV---  332 (467)
Q Consensus       257 ~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~---  332 (467)
                      +|+++|+++++|.+.. +.....+.+.+         .-.+++.|..|.+ |.+|  +|+++   ..++..+.....   
T Consensus       152 ~~~~~g~~~~vDa~qs-~G~~~~d~~~~---------~~D~~~~s~~K~l~gp~G--~g~l~---~~~~~~~~~~~~~~~  216 (361)
T d1m32a_         152 LAHRYGKTYIVDAMSS-FGGIPMDIAAL---------HIDYLISSANKCIQGVPG--FAFVI---AREQKLAACKGHSRS  216 (361)
T ss_dssp             HHHHHTCEEEEECTTT-TTTSCCCTTTT---------TCSEEEEESSSTTCCCSS--EEEEE---EEHHHHTTCTTCCSC
T ss_pred             hhcccceeeEeecccc-cCccccccccc---------ccceEEeeecccccCCCC--ceEEE---echhhhhhhcccccc
Confidence            7999999999999954 33322222222         3457777888877 5567  57665   334443320000   


Q ss_pred             --h-HHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccc
Q 012238          333 --A-VIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  409 (467)
Q Consensus       333 --~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~  409 (467)
                        . ..................++.....+....+... . .  +.......++.+...+.+.+.++ ..|.    ....
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~-~-~--~~~~~~~~~~~~~~~~~l~~~~~-~~g~----~~~~  287 (361)
T d1m32a_         217 LSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKEL-A-K--EGGVAARHQRYQQNQRSLVAGMR-ALGF----NTLL  287 (361)
T ss_dssp             STTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH-H-H--HTHHHHHHHHHHHHHHHHHHHHH-HTTC----CBSS
T ss_pred             ccccchhhhccccccccccCCCCCchhhhHHHHHHHHH-H-H--hcchhhhHHHHHHHHHHHHHHHh-hcCC----cccC
Confidence              0 0001111122222223344444444444333211 0 0  11134555666677777888887 7764    2211


Q ss_pred             C----CcceEEe-c----CCCHHHHHHHHHcccEEEeCCC-------eEEe-ccCChhhHHHHHHHHHHHHH
Q 012238          410 R----QIGMFSF-T----GLNKAQSDNMTNKWHVYMTKDG-------RISL-AGLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       410 ~----~~g~f~~-~----~l~~~~~~~ll~~~gI~v~~gg-------Ris~-~~~~~~~i~~~~~~l~~~l~  464 (467)
                      +    ..+...+ .    +.+...+...+.++||.+.+|+       |||. +..+++++++++++|++++.
T Consensus       288 ~~~~rs~~v~~~~~p~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L~  359 (361)
T d1m32a_         288 DDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMY  359 (361)
T ss_dssp             CGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred             ChhhcCCcEEEEECCCCCCCCHHHHHHHHHHCCcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence            1    1122222 1    2344454445556799988763       9984 34588999999999999864

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.70  E-value=3.8e-16  Score=154.11  Aligned_cols=337  Identities=10%  Similarity=0.017  Sum_probs=182.6

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC-CcCCC------CcchHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLP------IEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~-~~Y~~------~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (467)
                      ++|-|..|      +..++|..+.+++.+.+..... ....+      ..-.++.|+.+|++++..      +++|++  
T Consensus        27 ~~iYLd~a------s~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~------~~ei~~--   92 (404)
T d1qz9a_          27 GVIYLDGN------SLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGAR------DGEVVV--   92 (404)
T ss_dssp             TCEECCTT------TSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCC------TTSEEE--
T ss_pred             CCEEcCCc------ccccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCC------CCcEEE--
Confidence            56655544      4444588889998888743210 10100      123457899999997655      889999  


Q ss_pred             cCCchhHHHHHHHH----HHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEE
Q 012238          157 GLSGTGSLRLAAAL----IERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (467)
Q Consensus       157 t~ggt~al~l~~~~----l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~  232 (467)
                      |.++|++++.+...    .....+|+.|++.+-.+..........+.++..++..  .....+++.+++.++   +++++
T Consensus        93 ~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~---~~T~l  167 (404)
T d1qz9a_          93 TDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYT--LRLVDSPEELPQAID---QDTAV  167 (404)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCE--EEEESSGGGHHHHCS---TTEEE
T ss_pred             ecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeecee--ccccccchhHHHhcC---CCceE
Confidence            99999999875321    1123578888888877654433333323333332221  123467888888887   78999


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCc
Q 012238          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER  312 (467)
Q Consensus       233 i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R  312 (467)
                      +++++.+|.||..++.+   +|+++|+++|+++++|.+ +.+.....  +..      +.+ ..+++.|..|.+..+..-
T Consensus       168 V~i~~v~~~tG~~~pv~---~i~~~~~~~~~~~~vD~~-q~~g~~~~--~~~------~~~-~d~~~~s~~K~~~~~~g~  234 (404)
T d1qz9a_         168 VMLTHVNYKTGYMHDMQ---ALTALSHECGALAIWDLA-HSAGAVPV--DLH------QAG-ADYAIGCTYKYLNGGPGS  234 (404)
T ss_dssp             EEEESBCTTTCBBCCHH---HHHHHHHHHTCEEEEECT-TTTTTSCC--CHH------HHT-CSEEEECSSSTTCCCTTC
T ss_pred             EEEecccccccceecHH---HHhccccccccceeEEee-cccccccc--ccc------ccc-ceEEEEechhhcccCCce
Confidence            99999999999999976   666679999999999998 44443222  111      122 345566667766433333


Q ss_pred             cceEEEecCCHHHHhhhhhhh---HHHHHHHHH---------hhccCccCCCchHHHH---HHHHHhCChhhHHHHHHHH
Q 012238          313 IGAMNVVCSSSDLAARCCEVA---VIQVKSQLK---------RLARPMYSNPPVHGAR---IVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       313 iG~~~~v~~~~~~~~~~~~~~---~~~~~~~l~---------~~~~~~~~~~~~~~~~---~~~~~L~~~~~~~~~~~~l  377 (467)
                      .|+++   .++...+. .++.   .........         ..........+.....   .....+.+...     ..+
T Consensus       235 ~g~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i  305 (404)
T d1qz9a_         235 QAFVW---VSPQLCDL-VPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDM-----ASL  305 (404)
T ss_dssp             CCEEE---ECTTTTTT-SCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCH-----HHH
T ss_pred             EEEEE---echhhhhh-CCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhH-----HHH
Confidence            56664   33333222 0000   000000000         0000011112222211   11122222111     112


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCcccccC-----CcceEEecCCCHHHHHHHHHcccEEEe--CCC--eEEecc-C
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-----QIGMFSFTGLNKAQSDNMTNKWHVYMT--KDG--RISLAG-L  447 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~-----~~g~f~~~~l~~~~~~~ll~~~gI~v~--~gg--Ris~~~-~  447 (467)
                      ++....+......+.+.+....+    ++.+.|     .++...|...+.+.+.+.|.++||.+.  .+|  |||++. .
T Consensus       306 ~~~~~~~~~~~~~l~~~~~~~~~----~~i~~p~~~~~r~~~vsf~~~~~~~v~~~L~~~gi~~~~r~~~~lRiS~~h~y  381 (404)
T d1qz9a_         306 RRKSLALTDLFIELVEQRCAAHE----LTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGDYREPRIMRFGFTPLY  381 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSC----CEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEECEEETTTEEEEECCTTT
T ss_pred             HHHHHHhHHHHHHHHHhhccCCC----EEEECCCCccceeeEEEEecCCHHHHHHHHHHCCCEEeecCCCeEEEECCCCC
Confidence            22222222222223333321223    444432     245444433355555555667799763  234  999964 2


Q ss_pred             -ChhhHHHHHHHHHHHHHh
Q 012238          448 -SLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       448 -~~~~i~~~~~~l~~~l~~  465 (467)
                       +.+|+++++++|++++++
T Consensus       382 nt~~did~~~~~L~~vl~~  400 (404)
T d1qz9a_         382 TTFTEVWDAVQILGEILDR  400 (404)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence             679999999999999874

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.70  E-value=3.9e-15  Score=145.29  Aligned_cols=191  Identities=16%  Similarity=0.029  Sum_probs=137.1

Q ss_pred             CchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-hCCCCE
Q 012238          101 YVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAK  179 (467)
Q Consensus       101 ~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~~~gd~  179 (467)
                      .+.+.-++++.+.++.+.   |..-....+|++.+|+++..+        ++++  +++||.|+.++  +.+. +.+||+
T Consensus         9 ~~~~~~~~~~~~~~~~~~---~~~G~~v~~~E~~la~~~g~~--------~ai~--~~sgt~Al~~a--l~al~~~~gde   73 (376)
T d1mdoa_           9 AMGAEELAAVKTVLDSGW---ITTGPKNQELEAAFCRLTGNQ--------YAVA--VSSATAGMHIA--LMALGIGEGDE   73 (376)
T ss_dssp             CCCHHHHHHHHHHHHHTC---CSSSHHHHHHHHHHHHHHCCS--------EEEE--ESCHHHHHHHH--HHHTTCCTTCE
T ss_pred             CCCHHHHHHHHHHHhcCC---CcCCHHHHHHHHHHHHHHCcC--------eEEE--eCCHHHHHHHH--HHHhCCCCCCE
Confidence            345566677777776653   333446899999999997543        5666  78999999998  4443 569999


Q ss_pred             EEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 012238          180 VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ  259 (467)
Q Consensus       180 Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~  259 (467)
                      |++++.+|......+...|++++.++++ ++++.+|++.+++.++   +++++|+++   |..|...+.+   +|.++|+
T Consensus        74 Vi~~~~~~~~~~~ai~~~g~~pv~~d~~-~~~~~~d~~~l~~~i~---~~tkaIi~~---h~~G~~~~~~---~i~~i~~  143 (376)
T d1mdoa_          74 VITPSMTWVSTLNMIVLLGANPVMVDVD-RDTLMVTPEHIEAAIT---PQTKAIIPV---HYAGAPADLD---AIYALGE  143 (376)
T ss_dssp             EEEESSSCHHHHHHHHHTTCEEEEECBC-TTTCCBCHHHHHHHCC---TTEEEECCB---CGGGCCCCHH---HHHHHHH
T ss_pred             EEEecccccccccchhccccceeeeccc-ccccCCCHHHHHHhcC---CCCeEEEEe---CCCCCccchh---HHHHHHH
Confidence            9999999999999999999999999985 5578899999999998   578888765   4568766655   6666799


Q ss_pred             hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhh
Q 012238          260 EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       260 ~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                      ++|++||+|++......-   .+. .    ....+..++..+.+|.++ .|. -|.+  ++.++++.++
T Consensus       144 ~~~i~vIeD~a~a~g~~~---~~~-~----~g~~g~~~~Sf~~~K~l~-~g~-GG~i--~t~~~~l~~~  200 (376)
T d1mdoa_         144 RYGIPVIEDAAHATGTSY---KGR-H----IGARGTAIFSFHAIKNIT-CAE-GGIV--VTDNPQFADK  200 (376)
T ss_dssp             HHTCCBCEECTTCTTCEE---TTE-E----TTSSSEEEEECCTTSSSC-SSS-CEEE--EESCHHHHHH
T ss_pred             hcCceEEeccchhccCee---CCe-e----cccccCccccCCCcCCCC-CCC-CCEE--EEechhHHHH
Confidence            999999999994332210   000 0    011123344444568886 443 3555  3788888776

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.70  E-value=9.6e-15  Score=140.88  Aligned_cols=277  Identities=14%  Similarity=0.095  Sum_probs=184.2

Q ss_pred             CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCCC
Q 012238          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVP  200 (467)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~  200 (467)
                      .+....|.+.+|++-.+        +..++  +++|+.|+..   ++..+.+||+|++..+.|......++    ..|++
T Consensus        48 nPt~~~le~~la~LE~~--------~~a~~--fsSGMaAisa---ll~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~  114 (380)
T d1ibja_          48 NPTRDALESLLAKLDKA--------DRAFC--FTSGMAALSA---VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV  114 (380)
T ss_dssp             CHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHH---HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCE
T ss_pred             ChHHHHHHHHHHHHcCC--------ceEEe--hhhHHHHHHH---HHHhhCCCCEEEEEecccccccchhhhhhcccccc
Confidence            44567888889988543        24555  7999999864   46678899999999999987766654    45766


Q ss_pred             eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012238          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (467)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~  280 (467)
                      +..++.       .|.++++++++   +++++|++-+|.|||..+.+.+   +|+++|+++|+++|+|..+.....-   
T Consensus       115 ~~~~d~-------~~~~~~~~ai~---~~t~li~~EtpsNP~l~v~Di~---~i~~iA~~~g~~~vVDnT~atP~~~---  178 (380)
T d1ibja_         115 VKRVNT-------TKLDEVAAAIG---PQTKLVWLESPTNPRQQISDIR---KISEMAHAQGALVLVDNSIMSPVLS---  178 (380)
T ss_dssp             EEEECT-------TSHHHHHHHCC---SSEEEEEECSSCTTTCCCCCHH---HHHHHHHTTTCEEEEECTTTCTTTC---
T ss_pred             ccccCc-------chHHHHHHHhc---cCccEEEeccccccccccccHH---HHHHHHHHcCCeEEeeccccccccc---
Confidence            666543       47888888886   7899999999999999998876   6666699999999999998654322   


Q ss_pred             CChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHH
Q 012238          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV  360 (467)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  360 (467)
                       .  ++    +. .-.|++.|.+|.++-.|--+|..+ +..++++.+.            ++..........++.....+
T Consensus       179 -~--Pl----~~-GaDiVvhS~TKyi~GhsDv~~G~v-~~~~~~~~~~------------~~~~~~~~G~~l~p~~a~ll  237 (380)
T d1ibja_         179 -R--PL----EL-GADIVMHSATKFIAGHSDVMAGVL-AVKGEKLAKE------------VYFLQNSEGSGLAPFDCWLC  237 (380)
T ss_dssp             -C--GG----GT-TCSEEEEETTTTTTCSSCCCCEEE-EECSHHHHHH------------HHHHHHHTTCBCCHHHHHHH
T ss_pred             -c--cc----cc-CCCEEEecccceeccccCcccccc-ccchhhHHHH------------HHhhccccCCcCCHHHHHHH
Confidence             1  11    12 245889999999987777666664 2466666665            44444444455666666666


Q ss_pred             HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC------CCCccc----------ccCCcceEEecCCCHHH
Q 012238          361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS------GKDWSF----------ILRQIGMFSFTGLNKAQ  424 (467)
Q Consensus       361 ~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~------~~~~~~----------~~~~~g~f~~~~l~~~~  424 (467)
                      ..-|++          +..+.++..++...+.+.|+ +...      |+ +.-          ....++++.+.--+.+.
T Consensus       238 ~rgl~T----------l~lRm~~~~~nA~~lA~~L~-~hp~V~~V~yPg-l~s~p~~~~a~~~~~~~g~~~s~~~~~~~~  305 (380)
T d1ibja_         238 LRGIKT----------MALRIEKQQENARKIAMYLS-SHPRVKKVYYAG-LPDHPGHHLHFSQAKGAGSVFSFITGSVAL  305 (380)
T ss_dssp             HHHHTT----------HHHHHHHHHHHHHHHHHHHH-TCTTCCEEECTT-STTSTTHHHHTTTCSCCCSEEEEECSCHHH
T ss_pred             Hhcchh----------hhhhHHHHHHHHHHHHHHHH-hCCCeeEEeccc-cccCccccccccccccccccccccccHHHH
Confidence            655554          34455556666777777777 4321      11 000          11233444443225555


Q ss_pred             HHHHHHcccE-E------------EeCC---------------C------eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          425 SDNMTNKWHV-Y------------MTKD---------------G------RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       425 ~~~ll~~~gI-~------------v~~g---------------g------Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ..++++.-.+ .            ..|.               |      |||++-   |+.+.+++-|+++++.+
T Consensus       306 a~~f~d~l~l~~~a~SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl---E~~eDLi~Dl~qAl~~l  378 (380)
T d1ibja_         306 SKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI---EDVDDLISDLDIAFKTF  378 (380)
T ss_dssp             HHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS---SCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhCCcCeEeeccCCccccccCchhhhhhcCCHHHHHHcCCCcCeEEEEecc---CCHHHHHHHHHHHHHhc
Confidence            5555544322 1            1110               2      999997   67777888888888764

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.70  E-value=1.6e-15  Score=152.49  Aligned_cols=310  Identities=12%  Similarity=0.069  Sum_probs=184.7

Q ss_pred             CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh-----CCCCEEEEcCCCCcchHHHH
Q 012238          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-----FPGAKVLISSPTWGNHKNIF  194 (467)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~-----~~gd~Vlv~~P~y~~~~~~~  194 (467)
                      ..|....+..+|++++++++.        .+++++  +++|++|..++..++...     ..+..++...+.|..+....
T Consensus        69 ~~y~~~~~~~~le~~~a~l~g--------~~~~~~--~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~  138 (465)
T d1ax4a_          69 EAYAGSRNYYDLKDKAKELFN--------YDYIIP--AHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHV  138 (465)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHC--------CCEEEE--ESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHH
T ss_pred             hhhccChHHHHHHHHHHHHHC--------CCEEEE--CCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHH
Confidence            569889999999999999963        247777  899999999985444211     12234566666666667777


Q ss_pred             hhCCCCeEEeeee--------cCCCCCCChhhHHHHHHcCC-CCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCCe
Q 012238          195 NDARVPWSEYRYY--------DPKTVGLDFEGMIADIKAAP-GGSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHI  264 (467)
Q Consensus       195 ~~~G~~~~~v~~~--------~~~~~~~d~~~l~~~l~~~~-~~~~~i~i~~p~NPTG-~~~~~~~l~~l~~~~~~~~~~  264 (467)
                      ...|..++.++..        ++..+.+|++.+++++++.. ....++++...+|..| ..++.+++++|.++|++||++
T Consensus       139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~  218 (465)
T d1ax4a_         139 ELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIF  218 (465)
T ss_dssp             HHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCC
T ss_pred             HHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCE
Confidence            7888887765321        23456789999999998643 3445666666666654 568999999999999999999


Q ss_pred             eEEeccCCCCCC--------CCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCH-HHHhhhhhhhHH
Q 012238          265 PFFDVAYQGFAS--------GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS-DLAARCCEVAVI  335 (467)
Q Consensus       265 li~Deay~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~-~~~~~~~~~~~~  335 (467)
                      +|+|+++.....        +........+...... ...++..|.+|.+  .+++.|++.  +.+. .....       
T Consensus       219 l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~d~~s~s~~k~~--~~~~~g~l~--~~~~~~~~~~-------  286 (465)
T d1ax4a_         219 VVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYK-YADALTMSAKKDP--LLNIGGLVA--IRDNEEIFTL-------  286 (465)
T ss_dssp             EEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGG-GCSEEEEETTSTT--CCSSCEEEE--ESSCHHHHHH-------
T ss_pred             EEEECcchhhhhcccccccccccccchhhhcccccc-ccceeEeecccCc--ccccceeEe--ecchHHHHHh-------
Confidence            999999742110        0000111111111111 1234555666655  556678885  3332 22222       


Q ss_pred             HHHHHHHhhccC-ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcce
Q 012238          336 QVKSQLKRLARP-MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGM  414 (467)
Q Consensus       336 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~  414 (467)
                       ........... .+.+.......++...+.. ..       .+...++..++.+++.+.|+ +.+.    ....+.++.
T Consensus       287 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e-~~-------~~~~~~~~~~~~~~l~~~L~-~~g~----~~v~~~~~~  352 (465)
T d1ax4a_         287 -ARQRCVPMEGFVTYGGLAGRDMAAMVQGLEE-GT-------EEEYLHYRIGQVKYLGDRLR-EAGI----PIQYPTGGH  352 (465)
T ss_dssp             -HHHHHHHHTCSTTTTTCCHHHHHHHHHHHHH-TT-------CHHHHHHHHHHHHHHHHHHH-HTTC----CBCSSCCSS
T ss_pred             -hhccccccccCCCcchhhHHHHHHHhhhhHH-hh-------hHHHHHHHHHHHHHHHHHHH-hhcC----ccccCCCcc
Confidence             11111111111 1223333332222222110 01       12333444556778888898 7773    556666666


Q ss_pred             EEecCC-------------CHHHHHHHHHcccEEEeCC-------------------C--eEEec--cCChhhHHHHHHH
Q 012238          415 FSFTGL-------------NKAQSDNMTNKWHVYMTKD-------------------G--RISLA--GLSLAKCEYLADA  458 (467)
Q Consensus       415 f~~~~l-------------~~~~~~~ll~~~gI~v~~g-------------------g--Ris~~--~~~~~~i~~~~~~  458 (467)
                      +++.+.             ...+..+++.+.||...+.                   +  |+++.  ..+++++++++++
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~  432 (465)
T d1ax4a_         353 AVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADA  432 (465)
T ss_dssp             EEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHH
T ss_pred             eeeeehhhhcCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHH
Confidence            554321             1234667777789875432                   1  77764  2478999999999


Q ss_pred             HHHHHHh
Q 012238          459 IIDSYHN  465 (467)
Q Consensus       459 l~~~l~~  465 (467)
                      |++++++
T Consensus       433 l~~v~~~  439 (465)
T d1ax4a_         433 LIGLKEK  439 (465)
T ss_dssp             HHTTHHH
T ss_pred             HHHHHHH
Confidence            9998764

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=1.9e-15  Score=147.88  Aligned_cols=332  Identities=11%  Similarity=0.013  Sum_probs=188.9

Q ss_pred             CCCCchHHHHHHHHHHHhcCCCCcCCC--CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh-
Q 012238           98 LQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-  174 (467)
Q Consensus        98 ~~p~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~-  174 (467)
                      |+.++++.|++|+...   . ...+.+  ..-..+.++.+.+.+...  ...+++.|++  |.|||++++.+  +...+ 
T Consensus        10 GP~~v~~~V~~Am~~~---~-~~hr~~~f~~~~~~~~~~~r~~~~~~--~~~~~~~i~~--t~sgT~a~~~~--~~~l~~   79 (382)
T d2bkwa1          10 GPIILSGAVQKALDVP---S-LGHTSPEFVSIFQRVLKNTRAVFKSA--AASKSQPFVL--AGSGTLGWDIF--ASNFIL   79 (382)
T ss_dssp             SSCCCCHHHHHTTSCC---C-CCTTSHHHHHHHHHHHHHHHHHTTCC--GGGTCEEEEE--ESCTTHHHHHH--HHHHSC
T ss_pred             CCCCCCHHHHHHhCcc---c-CCCCcHHHHHHHHHHHHHHHHHHhhh--cCCCCeEEEE--eCcHHHHHHHH--HHHHHH
Confidence            3344578888776321   1 112222  112344555555554322  1123456778  99999999997  33333 


Q ss_pred             --CCCCEEEEcCCCCcc--hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH
Q 012238          175 --FPGAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQ  250 (467)
Q Consensus       175 --~~gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~  250 (467)
                        .+||+|++..-.+..  +...++..|.....+... +.+...+.+.+++.+..  .+++++++++.+|.||+..+.++
T Consensus        80 ~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~tg~~~~~~~  156 (382)
T d2bkwa1          80 SKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL-KIGESVPLELITEKLSQ--NSYGAVTVTHVDTSTAVLSDLKA  156 (382)
T ss_dssp             TTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS-STTSCCCHHHHHHHHHH--SCCSEEEEESEETTTTEECCHHH
T ss_pred             hcCCCCceEEEEechhhhhhhhhcccccccccccccc-CCCCccchhHHHHHhhh--ccchheeeeeccccccccccchh
Confidence              489999998876644  344566778777766542 44566888888888875  45668888889999999999886


Q ss_pred             HHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc-ccCCCccceEEEecCCHHHHh
Q 012238          251 WEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAA  327 (467)
Q Consensus       251 l~~l~~~~~~--~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~  327 (467)
                      +.++   |++  +++++++|.+ +.+..-..+.+.+         .-.+++.|-.|.+ |++|  +|+++   .+++..+
T Consensus       157 ~~~~---~~~~~~~~~~~vDa~-qs~g~~pid~~~~---------giD~~~~s~~K~l~gP~G--~g~l~---vs~~~~~  218 (382)
T d2bkwa1         157 ISQA---IKQTSPETFFVVDAV-CSIGCEEFEFDEW---------GVDFALTASQKAIGAPAG--LSISL---CSSRFMD  218 (382)
T ss_dssp             HHHH---HHHHCTTSEEEEECT-TTTTTSCCCTTTT---------TCSEEEEESSSTTCCCSC--EEEEE---ECHHHHH
T ss_pred             hhhh---ccccccceeeeeecc-ccccccccccccc---------CeeEEeecccccCcCCCc--hhhhh---ccHHHHh
Confidence            6555   554  4699999999 5454433333332         2356677888877 7788  57775   4455544


Q ss_pred             hhhhhh-----------HHHHHHHHH---hhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          328 RCCEVA-----------VIQVKSQLK---RLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  393 (467)
Q Consensus       328 ~~~~~~-----------~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~  393 (467)
                      ......           .........   ...+.....++.....++..+|+.     ..++.++...++.++.++++++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~-----~~~~g~~~~~~~~~~l~~~l~~  293 (382)
T d2bkwa1         219 YALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE-----ILEEGLHKRWDLHREMSDWFKD  293 (382)
T ss_dssp             HHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH-----HHHHCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHH-----HHHhhhhhhHHHHHHHHHHHHH
Confidence            300000           000011111   111222223444443444433321     1123356667777777888888


Q ss_pred             HhhhccCCCCCcccccC---CcceEEecCCCHHHHHHHHHcccEEEeCCC---------eEE-eccC-ChhhHHHHHHHH
Q 012238          394 SLSAKDKSGKDWSFILR---QIGMFSFTGLNKAQSDNMTNKWHVYMTKDG---------RIS-LAGL-SLAKCEYLADAI  459 (467)
Q Consensus       394 ~l~~~~g~~~~~~~~~~---~~g~f~~~~l~~~~~~~ll~~~gI~v~~gg---------Ris-~~~~-~~~~i~~~~~~l  459 (467)
                      .+.+..+... +...++   ..++..+...+.+.+..+|+++||.+..|.         ||+ ++.. +++++++++++|
T Consensus       294 ~l~~~~~~~~-~~~~~~~~~s~~v~~~~~~~~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l  372 (382)
T d2bkwa1         294 SLVNGLQLTS-VSRYPSNMSAHGLTAVYVADPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCF  372 (382)
T ss_dssp             HHHTTTCCEE-SSCSSSTTBCSSCEEEECSCHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHH
T ss_pred             Hhhhcccccc-cccCchhccCCcEEEEcCCCHHHHHHHHHHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHH
Confidence            8762222100 111111   113233333356666777788999998871         998 6543 346666676666


Q ss_pred             HHHHHhc
Q 012238          460 IDSYHNV  466 (467)
Q Consensus       460 ~~~l~~~  466 (467)
                      ..+...|
T Consensus       373 ~~i~~~L  379 (382)
T d2bkwa1         373 DLIKLAL  379 (382)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            6554433

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.68  E-value=6.5e-15  Score=142.37  Aligned_cols=214  Identities=18%  Similarity=0.170  Sum_probs=152.2

Q ss_pred             CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCC
Q 012238          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVP  200 (467)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~  200 (467)
                      .+....|.+.++++-.+.        ..++  +++|+.|+..+  ++..+.+||+|+++...|.+....+    +..|++
T Consensus        58 nPT~~~LE~~la~LEg~~--------~a~~--~~SGmaAi~~~--l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~  125 (392)
T d1gc0a_          58 NPTLNLLEARMASLEGGE--------AGLA--LASGMGAITST--LWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVK  125 (392)
T ss_dssp             CHHHHHHHHHHHHHHTCS--------EEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCE
T ss_pred             ChHHHHHHHHHHHHhCCc--------ceee--hhhHHHHHHHH--HHhhccCCCeeecccccchhhhhhhhhhhccCCcc
Confidence            445778899999995432        4455  79999999988  6777889999999999998776655    456887


Q ss_pred             eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012238          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (467)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~  280 (467)
                      +..++.       -|++.++++++   +++++|++-+|.|||..+.+.+   +|+++|+++|+++++|..|.....-   
T Consensus       126 ~~~~d~-------~d~~~~~~ai~---~~t~lv~~Esp~NP~l~v~Di~---~i~~ia~~~g~~~vvDnT~atP~~~---  189 (392)
T d1gc0a_         126 LRHVDM-------ADLQALEAAMT---PATRVIYFESPANPNMHMADIA---GVAKIARKHGATVVVDNTYCTPYLQ---  189 (392)
T ss_dssp             EEEECT-------TCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHH---HHHHHHGGGTCEEEEECTTTHHHHC---
T ss_pred             cccCCc-------cCHHHHHHhCC---CCCeEEEecccccceeeecchH---HHHHHHHhcCCEEEEecCccCcccc---
Confidence            777654       47899999987   7899999999999999998866   6777799999999999997532211   


Q ss_pred             CChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHH
Q 012238          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV  360 (467)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  360 (467)
                       .  ++    +.+ -.|++.|.+|.++-.|--+|.++  +.+.+.+.+        .+  +..........+++..+..+
T Consensus       190 -~--Pl----~~G-aDivihS~TKyi~Ghsd~~~G~v--~~~~~~~~~--------~r--~~~~~~~~G~~~~p~da~ll  249 (392)
T d1gc0a_         190 -R--PL----ELG-ADLVVHSATKYLSGHGDITAGIV--VGSQALVDR--------IR--LQGLKDMTGAVLSPHDAALL  249 (392)
T ss_dssp             -C--GG----GGT-CSEEEEETTTTTTCSSSCCCEEE--EECHHHHHH--------HH--HTHHHHHTCCCCCHHHHHHH
T ss_pred             -C--hH----HhC-CCEEEEecceeecCCcccccccc--cchhHHHHH--------HH--HHHHHHccCCcCChhhHHHH
Confidence             0  11    222 35889999999976676666665  466666554        11  22222223445666666666


Q ss_pred             HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       361 ~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      ..-|++          +..+.++..++...+.+.|+
T Consensus       250 ~rgl~T----------L~lRm~~~~~nA~~lA~~L~  275 (392)
T d1gc0a_         250 MRGIKT----------LNLRMDRHCANAQVLAEFLA  275 (392)
T ss_dssp             HHHHTT----------HHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhcccc----------HHHHHHHHHHHHHHHHHHHH
Confidence            555544          34455556666777777776

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.68  E-value=3.7e-14  Score=137.32  Aligned_cols=279  Identities=12%  Similarity=0.114  Sum_probs=182.9

Q ss_pred             CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCC
Q 012238          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVP  200 (467)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~  200 (467)
                      .+....|.+.+|++.++        +..++  +++|+.|+..+  ++..+.+||+|+++...|......+    +..|.+
T Consensus        66 nPt~~~LE~~la~LEgg--------~~a~~--~sSGMaAi~~~--l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~  133 (398)
T d1qgna_          66 NPTTVVLEEKISALEGA--------ESTLL--MASGMCASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETILPKMGIT  133 (398)
T ss_dssp             CHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCE
T ss_pred             ChHHHHHHHHHHHHhCC--------ceEEE--ecCcchHHHHH--Hhhcccccccccccccccchhhhhhcccccccccc
Confidence            45567888999998543        24555  79999999987  6777889999999999998765554    456777


Q ss_pred             eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012238          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (467)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~  280 (467)
                      +..++.       .|.+..++.+..  +++++|++-+|.|||..+.+.+   +|+++|+++|+++|+|..+.....-.  
T Consensus       134 ~~~~~~-------~~~~~~~~~~~~--~~t~~v~~EspsNP~l~v~Di~---~ia~ia~~~g~~~vVDnT~atP~~~~--  199 (398)
T d1qgna_         134 ATVIDP-------ADVGALELALNQ--KKVNLFFTESPTNPFLRCVDIE---LVSKLCHEKGALVCIDGTFATPLNQK--  199 (398)
T ss_dssp             EEEECS-------SCHHHHHHHHHH--SCEEEEEEESSCTTTCCCCCHH---HHHHHHHHTTCEEEEECTTTCTTTCC--
T ss_pred             cccccc-------cchhhhhhhhcc--ccceEEEccCccccccccchHH---HHHHHHhhcCCEEEecceeeccccCC--
Confidence            666643       344545544432  6889999999999999988865   77777999999999999976433221  


Q ss_pred             CChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHH
Q 012238          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV  360 (467)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  360 (467)
                        +  +    +.+ -.|++.|.+|.++-.|--+|.++  +.+++.+..            ++..........++.....+
T Consensus       200 --P--l----~~G-aDiVihS~TKy~~Ghsdv~~G~v--~~~~~~~~~------------~~~~~~~~G~~l~p~~a~ll  256 (398)
T d1qgna_         200 --A--L----ALG-ADLVLHSATKFLGGHNDVLAGCI--SGPLKLVSE------------IRNLHHILGGALNPNAAYLI  256 (398)
T ss_dssp             --T--T----TTT-CSEEEECTTTTTTCSSSCCCEEE--EECHHHHHH------------HHHHHHHHCCCCCHHHHHHH
T ss_pred             --c--h----hhC-CCEEEEechhhcCcccceeehhh--cchhhhhhh------------hhhhcccCCCcCCHHHHHHH
Confidence              1  1    122 35789999999987777666664  577877776            44444434455666666666


Q ss_pred             HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC------CCCcc---------cccCCcceEEec-CCCHHH
Q 012238          361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS------GKDWS---------FILRQIGMFSFT-GLNKAQ  424 (467)
Q Consensus       361 ~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~------~~~~~---------~~~~~~g~f~~~-~l~~~~  424 (467)
                      ..-|++          +..+.++..++...+.+.|+ +...      |+.-+         .....||++.|. .-+.+.
T Consensus       257 ~rgl~T----------L~lRm~~~~~nA~~lA~~L~-~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~~~  325 (398)
T d1qgna_         257 IRGMKT----------LHLRVQQQNSTALRMAEILE-AHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLT  325 (398)
T ss_dssp             HHHGGG----------HHHHHHHHHHHHHHHHHHHH-TCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHH
T ss_pred             HhcchH----------HHHHHHHHHHHHHHHHHHHH-hCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCHHH
Confidence            555443          34455556666777777776 4321      21000         012235665553 235555


Q ss_pred             HHHHHHcccEE-EeC--C-------------------------C------eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          425 SDNMTNKWHVY-MTK--D-------------------------G------RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       425 ~~~ll~~~gI~-v~~--g-------------------------g------Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +.+++++-.+. ..+  |                         |      |||++-   |+.+.+++-|+++++.+
T Consensus       326 a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl---Ed~eDLi~Dl~~AL~~i  398 (398)
T d1qgna_         326 TAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV---EDFDDLKADILQALDSI  398 (398)
T ss_dssp             HHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS---SCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCcceeeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEecc---CCHHHHHHHHHHHHhcC
Confidence            55555543321 111  1                         2      999997   66777788888887753

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=4.2e-14  Score=136.38  Aligned_cols=213  Identities=15%  Similarity=0.115  Sum_probs=149.6

Q ss_pred             CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCC
Q 012238          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVP  200 (467)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~  200 (467)
                      .+....|.+.++++-.+        +..++  +++|+.|+..+  ++..+.+||.|+++...|......+    ...|..
T Consensus        49 nPt~~~le~~la~LEgg--------~~a~~--~sSGMaAi~~~--l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~  116 (384)
T d1cs1a_          49 NPTRDVVQRALAELEGG--------AGAVL--TNTGMSAIHLV--TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYR  116 (384)
T ss_dssp             CHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCE
T ss_pred             CHHHHHHHHHHHHHhCC--------CceEE--ecChHHHHHHH--Hhhcccccceecccccccchhhhhhhhhhcccccc
Confidence            45677888999999543        24555  79999999987  6667889999999999997664443    345655


Q ss_pred             eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012238          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (467)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~  280 (467)
                      +..++.       .|.+.+++.+.   +++++|++-+|.|||..+.+.+   +|+++|+++|+++|+|..|.....-   
T Consensus       117 ~~~~d~-------~d~~~~~~~~~---~~t~~v~~EspsNP~l~v~Di~---~i~~ia~~~g~~~vVDNT~atP~~~---  180 (384)
T d1cs1a_         117 VLFVDQ-------GDEQALRAALA---EKPKLVLVESPSNPLLRVVDIA---KICHLAREVGAVSVVDNTFLSPALQ---  180 (384)
T ss_dssp             EEEECT-------TCHHHHHHHHH---TCCSEEEEECSCTTTCCCCCHH---HHHHHHHHTTCEEEEECTTTCTTTC---
T ss_pred             cccccC-------CCHHHHHhhcc---ccccEEEEeccccccceeccHH---HHhhhhhhcCcEEEEeccccCcccc---
Confidence            555433       57889999888   6888999999999999998876   6677799999999999998543322   


Q ss_pred             CChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHH
Q 012238          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV  360 (467)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  360 (467)
                       .  ++    +.+ -.|++.|.+|.++-.|--+|.++ +..++++.+.            +...........++.....+
T Consensus       181 -~--Pl----~~G-aDiVvhS~TKyi~Ghsdv~~G~v-v~~~~~~~~~------------~~~~~~~~G~~~~p~~a~ll  239 (384)
T d1cs1a_         181 -N--PL----ALG-ADLVLHSCTKYLNGHSDVVAGVV-IAKDPDVVTE------------LAWWANNIGVTGGAFDSYLL  239 (384)
T ss_dssp             -C--GG----GGT-CSEEEEETTTTTTCSSCCCCEEE-EESSHHHHHH------------HHHHHHHHTCBCCHHHHHHH
T ss_pred             -c--cc----ccC-CCEEEEccccccccCCCcccccc-cCCchhhhhh------------hhhhhhhhhhccccccHHHH
Confidence             1  11    222 35889999999987776666654 3566666555            33333333444555665665


Q ss_pred             HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       361 ~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      ..-|+.          +..+.++..++...+.+.|+
T Consensus       240 ~rgL~T----------L~lRm~~~~~nA~~lA~~L~  265 (384)
T d1cs1a_         240 LRGLRT----------LVPRMELAQRNAQAIVKYLQ  265 (384)
T ss_dssp             HHHHTT----------HHHHHHHHHHHHHHHHHHHT
T ss_pred             hhccch----------hHHHHHHHHHHHHHHHHhcc
Confidence            555544          33445555667777788887

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.67  E-value=1.1e-14  Score=139.17  Aligned_cols=323  Identities=19%  Similarity=0.253  Sum_probs=211.6

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC------CcchHHHH---HHHHHHHhCCCCcccccCceee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP------IEGLAAFN---KVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~------~~G~~~lr---~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      +.|+|-..++       .+++.|++++...+...+..+|+.      ..-+.++.   ...|+.+++.        +-+-
T Consensus        24 ~~l~LiaSEN-------~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a--------~~an   88 (405)
T d1kl1a_          24 AKIELIASEN-------FVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGA--------EHAN   88 (405)
T ss_dssp             HSEECCTTCC-------CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCC--------SEEE
T ss_pred             cCceEeccCC-------cCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCC--------Ccce
Confidence            6799987655       237899999988885544444432      22233333   3333444443        2344


Q ss_pred             eecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-----HhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCC
Q 012238          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~-----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (467)
                      ||..+|+.|...+  +.+++.|||+|+..++...++..-     ......+.+.++++ ++++.+|.+++++.+++  .+
T Consensus        89 Vqp~SGs~An~av--~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d-~~~~~ID~d~l~~~a~~--~k  163 (405)
T d1kl1a_          89 VQPHSGAQANMAV--YFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVD-PETHVIDYDDVREKARL--HR  163 (405)
T ss_dssp             CCCSSHHHHHHHH--HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBC-TTTCSBCHHHHHHHHHH--HC
T ss_pred             eeccCchHHHHHH--HHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccc-hhcccccHHHHHHHHHh--hC
Confidence            5678899988887  777889999999999766654321     12234566777774 56778999999999987  46


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc
Q 012238          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (467)
                      +++|+...-.+|--.     +++++.++|.+.|.+++.|.++. ++..++.-.+  ++    + + -.++..|..|+|  
T Consensus       164 PklIi~G~S~y~r~~-----d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~--P~----~-~-aDvvt~tThKtl--  228 (405)
T d1kl1a_         164 PKLIVAAASAYPRII-----DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPN--PV----P-Y-AHFVTTTTHKTL--  228 (405)
T ss_dssp             CSEEEECCSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--ST----T-T-CSEEEEESSSTT--
T ss_pred             cceEEeccccccccc-----ChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCC--hh----h-h-hhheeccccccc--
Confidence            668887777666533     36677777999999999999963 4433322111  11    1 1 246688999997  


Q ss_pred             CCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238          309 YAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  388 (467)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r  388 (467)
                      +|-|-|.+.   .++++.+.            +.+...+...+.+.....++.++    .+.+.+..+.+...++..++.
T Consensus       229 rGPrgg~I~---~~~~~~~~------------i~~avfPg~qggp~~~~iAa~Av----al~Ea~~~~fk~Ya~qvv~NA  289 (405)
T d1kl1a_         229 RGPRGGMIL---CQEQFAKQ------------IDKAIFPGIQGGPLMHVIAAKAV----AFGEALQDDFKAYAKRVVDNA  289 (405)
T ss_dssp             CCCSCEEEE---ECHHHHHH------------HHHHHTTTTCSSCCHHHHHHHHH----HHHHHHSHHHHHHHHHHHHHH
T ss_pred             cCCCCceEE---ecchhHHH------------HHhhhCcccccCcchhHHHHHHH----HHHHHhChHHHHHHHHHHHHH
Confidence            577878775   55666666            66665555544444333333222    233323344567788888899


Q ss_pred             HHHHHHhhhccCCCCCcccccCCcce-EEec-----CCCHHHHHHHHHcccEEEeC----C---------C-eEEec---
Q 012238          389 QKLFDSLSAKDKSGKDWSFILRQIGM-FSFT-----GLNKAQSDNMTNKWHVYMTK----D---------G-RISLA---  445 (467)
Q Consensus       389 ~~l~~~l~~~~g~~~~~~~~~~~~g~-f~~~-----~l~~~~~~~ll~~~gI~v~~----g---------g-Ris~~---  445 (467)
                      +.|.+.|. +.|+    ++.....-. .+|+     +++...++++|++.||.+..    +         | ||...   
T Consensus       290 kaLa~~L~-~~G~----~vv~ggTd~H~vlvdl~~~~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~T  364 (405)
T d1kl1a_         290 KRLASALQ-NEGF----TLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVT  364 (405)
T ss_dssp             HHHHHHHH-HTTC----EEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHH
T ss_pred             HHHHHHHh-cCCc----eeecCCCccceeeccccccCCcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHH
Confidence            99999999 8884    555431112 2344     45778888999999998863    2         3 88743   


Q ss_pred             --cCChhhHHHHHHHHHHHHHh
Q 012238          446 --GLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       446 --~~~~~~i~~~~~~l~~~l~~  465 (467)
                        ++.+++++++.+.|.++++.
T Consensus       365 trG~~e~dm~~ia~~I~~~l~~  386 (405)
T d1kl1a_         365 TRGFGLEEMDEIAAIIGLVLKN  386 (405)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHTC
T ss_pred             hCCCCHHHHHHHHHHHHHHHhc
Confidence              35789999999999999864

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.66  E-value=3.4e-15  Score=146.35  Aligned_cols=327  Identities=11%  Similarity=0.048  Sum_probs=185.6

Q ss_pred             CCchHHHHHHHHHHHhcCCCCcCCC--CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCC
Q 012238          100 PYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (467)
Q Consensus       100 p~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~g  177 (467)
                      ..+++.|++|+....    ...+.+  ..-..+.|+.++++++...     .+.|++  +.|||++++.+  +...+.+|
T Consensus        26 ~~~~~~V~~Am~~~~----~~hr~~ef~~i~~~~r~~L~~ll~~~~-----~~~i~~--~gsgT~a~ea~--~~~l~~~~   92 (388)
T d2ch1a1          26 SNCSKRVLTAMTNTV----LSNFHAELFRTMDEVKDGLRYIFQTEN-----RATMCV--SGSAHAGMEAM--LSNLLEEG   92 (388)
T ss_dssp             CCCCHHHHHHTTSCC----CCTTCHHHHHHHHHHHHHHHHHHTCCC-----SCEEEE--SSCHHHHHHHH--HHHHCCTT
T ss_pred             CCCCHHHHHHhCcCC----CCCCCHHHHHHHHHHHHHHHHHhCCCC-----CeEEEE--cCcHHHHHHHH--HHHhcccc
Confidence            345888888763321    122322  2346788889999986531     334555  88999999997  55566789


Q ss_pred             CEEEEcCCCCcch--HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012238          178 AKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (467)
Q Consensus       178 d~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~  255 (467)
                      ++|++..-.+...  ...++..+...+.+..  +.....+.+..++....  .+++++++++.+|.||...+.+   ++.
T Consensus        93 ~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~t~tG~~~~~~---~i~  165 (388)
T d2ch1a1          93 DRVLIAVNGIWAERAVEMSERYGADVRTIEG--PPDRPFSLETLARAIEL--HQPKCLFLTHGDSSSGLLQPLE---GVG  165 (388)
T ss_dssp             CEEEEEESSHHHHHHHHHHHHTTCEEEEEEC--CTTSCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECCCT---THH
T ss_pred             ccccccccccccccchhhhhhhccccccccc--ccccccchhhhhhhhcc--CCcceeeeeecccccccccchh---hhc
Confidence            9999887766543  3456677888877776  34456777777777664  4566888888999999999987   555


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc-ccCCCccceEEEecCCHHHHhhhhhh--
Q 012238          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARCCEV--  332 (467)
Q Consensus       256 ~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~--  332 (467)
                      ++|+++|.++++|.+ +.+.....+.+.+         .-.+++.|-.|.+ +.+|  +|.++   ..++..+.....  
T Consensus       166 ~~~~~~~~~~~vD~~-ss~g~~pid~~~~---------~~d~~~~s~~K~~~gp~G--~g~~~---~~~~~~~~~~~~~~  230 (388)
T d2ch1a1         166 QICHQHDCLLIVDAV-ASLCGVPFYMDKW---------EIDAVYTGAQKVLGAPPG--ITPIS---ISPKALDVIRNRRT  230 (388)
T ss_dssp             HHHHHTTCEEEEECT-TTBTTBCCCTTTT---------TCCEEECCCC-CCCCCSS--CEEEE---ECHHHHHHHHTCSS
T ss_pred             chhccccceeeeeee-ecccccccchhcc---------CceEEEEccccccCCCCe--EEEEe---ccHHHHHhhhcccC
Confidence            569999999999999 4444333332222         2345566666655 5555  46654   444444430000  


Q ss_pred             ----hHHHHHHHHHhh----ccCccCCCc-hHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 012238          333 ----AVIQVKSQLKRL----ARPMYSNPP-VHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK  403 (467)
Q Consensus       333 ----~~~~~~~~l~~~----~~~~~~~~~-~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~  403 (467)
                          .+..........    ....+...+ ......+...+..     ..........++.++........+. ..+...
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  304 (388)
T d2ch1a1         231 KSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQ-----IAEEGLENQIKRRIECAQILYEGLG-KMGLDI  304 (388)
T ss_dssp             CCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHH-----HHHHCHHHHHHHHHHHHHHHHHHHH-HHTCCB
T ss_pred             ccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHhhhh-hccccc
Confidence                000000000000    011122222 2222222222211     0011233344444444444444444 433210


Q ss_pred             Cc-ccccCCcce--EEec-CCCH-HHHHHHHHcccEEEeCC-----C---eEE-eccC-ChhhHHHHHHHHHHHHHhcC
Q 012238          404 DW-SFILRQIGM--FSFT-GLNK-AQSDNMTNKWHVYMTKD-----G---RIS-LAGL-SLAKCEYLADAIIDSYHNVS  467 (467)
Q Consensus       404 ~~-~~~~~~~g~--f~~~-~l~~-~~~~~ll~~~gI~v~~g-----g---Ris-~~~~-~~~~i~~~~~~l~~~l~~~~  467 (467)
                      .. .......+.  |.+. +++. ++...+++++||.+.+|     |   ||| ++.. +.|++++++++|+++++.++
T Consensus       305 ~~~~~~~rs~~v~~~~~p~g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~  383 (388)
T d2ch1a1         305 FVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH  383 (388)
T ss_dssp             SSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCHHHhCCeEEEEECCCCCCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhhC
Confidence            00 000011122  2232 5565 45677778889999886     2   999 6655 46899999999999998753

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.65  E-value=1e-14  Score=142.20  Aligned_cols=323  Identities=13%  Similarity=0.083  Sum_probs=186.9

Q ss_pred             CCCchHHHHHHHHHHHhcCCCCcCCC--CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCC
Q 012238           99 QPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP  176 (467)
Q Consensus        99 ~p~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~  176 (467)
                      ..++++.|++++....    .+.+.+  ..-+.+.|+.++++++...     ...|++  +.|||++++.+  +...+.+
T Consensus        26 P~~v~~~Vl~am~~~~----~~hr~~ef~~i~~~~r~~l~~ll~~~~-----~~~i~~--~g~gT~~~~~~--~~~~~~~   92 (377)
T d1vjoa_          26 PSNAHPSVLQAMNVSP----VGHLDPAFLALMDEIQSLLRYVWQTEN-----PLTIAV--SGTGTAAMEAT--IANAVEP   92 (377)
T ss_dssp             CCCCCHHHHHHHSSCC----CCTTSHHHHHHHHHHHHHHHHHHTCCC-----SCEEEE--SSCHHHHHHHH--HHHHCCT
T ss_pred             CCCCCHHHHHHhCcCC----CCCCCHHHHHHHHHHHHHHHHHhCCCC-----CeEEEE--cCcHHHHHHHH--HHhcccc
Confidence            3445888988764321    122222  2347888899999986542     345666  88999999998  5556779


Q ss_pred             CCEEEEcCCCCcch--HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHH
Q 012238          177 GAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKI  254 (467)
Q Consensus       177 gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l  254 (467)
                      |+++++..-.+...  .......+.....+..  +.+...+.+..+.....  .++.++.+++.+|.||+..+.+   +|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~tg~~~~i~---~i  165 (377)
T d1vjoa_          93 GDVVLIGVAGYFGNRLVDMAGRYGADVRTISK--PWGEVFSLEELRTALET--HRPAILALVHAETSTGARQPLE---GV  165 (377)
T ss_dssp             TCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECCCT---TH
T ss_pred             ccccceeeechhhhhhhhhhhhhccccccccc--CCCCcccchhhhhhhhc--Ccceeeeeeeeeccceeeechh---hh
Confidence            99998888766533  3344556655555554  33445666666666554  4566777788899999998866   66


Q ss_pred             HHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhh-
Q 012238          255 ADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVA-  333 (467)
Q Consensus       255 ~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~-  333 (467)
                      .++|+++|.++++|.+.. +.....+.+.+         +-.+++.|..|.++.|+ .+|.++   ..+..++...... 
T Consensus       166 ~~~~~~~g~~~~vDa~~~-~g~~~~~~~~~---------~~d~~~~s~~K~~~gp~-g~~~~~---~~~~~~~~~~~~~~  231 (377)
T d1vjoa_         166 GELCREFGTLLLVDTVTS-LGGVPIFLDAW---------GVDLAYSCSQKGLGCSP-GASPFT---MSSRAIEKLQRRRT  231 (377)
T ss_dssp             HHHHHHHTCEEEEECTTT-TTTSCCCTTTT---------TCSEEECCSSSTTCSCS-SCEEEE---ECHHHHHHHHTCSS
T ss_pred             hhhhhhccceEEEecchh-hhhhhhccccc---------ccceeeecccccccCCC-EEEEec---chhhHHhhhhccCC
Confidence            666999999999999953 33222222222         23456677777654333 145553   4455554300000 


Q ss_pred             -----HHHHHHH-HHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccc
Q 012238          334 -----VIQVKSQ-LKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF  407 (467)
Q Consensus       334 -----~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~  407 (467)
                           +...... ...........++...........    ....-....+...++.+++.+.+.+.+. ..+.    ..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~g~~~~~~~~~~~~~~l~~~l~-~~~~----~~  302 (377)
T d1vjoa_         232 KVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREA----LRLIAQEGLANCWQRHQKNVEYLWERLE-DIGL----SL  302 (377)
T ss_dssp             CCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHH----HHHHHHHCHHHHHHHHHHHHHHHHHHHH-HTTC----CB
T ss_pred             CCcceeeccchhhhccCcccccccccceechhhhHHH----HhhhhhcCchHHHHHHHHHhhhhhhhhh-ccCc----ee
Confidence                 0000000 001111112222322221111111    1001122356777788888888999888 6653    22


Q ss_pred             cc-C----Ccc-eEEec-CCCHHH-HHHHHHcccEEEeCC-----C---eEE-eccC-ChhhHHHHHHHHHHHHH
Q 012238          408 IL-R----QIG-MFSFT-GLNKAQ-SDNMTNKWHVYMTKD-----G---RIS-LAGL-SLAKCEYLADAIIDSYH  464 (467)
Q Consensus       408 ~~-~----~~g-~f~~~-~l~~~~-~~~ll~~~gI~v~~g-----g---Ris-~~~~-~~~~i~~~~~~l~~~l~  464 (467)
                      .. +    .+. .|... +++.+. ...|++++||.+..|     |   ||| ++.. +.+++++++++|+++++
T Consensus       303 ~~~~~~rs~~v~~~~~p~~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         303 HVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             SSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             ecChHhcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence            11 1    111 12222 355544 567778889998775     2   998 5533 57899999999999874

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=8.5e-15  Score=146.30  Aligned_cols=162  Identities=13%  Similarity=-0.004  Sum_probs=113.7

Q ss_pred             cCCchhHHHHHHHH-HHH-hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeee-cCCCCCCChhhHHHHHHcC-CCCcEE
Q 012238          157 GLSGTGSLRLAAAL-IER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAA-PGGSFI  232 (467)
Q Consensus       157 t~ggt~al~l~~~~-l~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~-~~~~~~  232 (467)
                      |.||+++...++.. ... ..+++.|+++...+..+...++.+|.+++.++.. +++++.+|++.|++++++. .+++.+
T Consensus       118 ~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~~~~  197 (445)
T d3bc8a1         118 VPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILC  197 (445)
T ss_dssp             ESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEE
T ss_pred             cccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeeccCcccccCHHHHHHHHHhccccCeEE
Confidence            67777655543111 111 2367899999999999999999999999888642 3557889999999999753 346788


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCc
Q 012238          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER  312 (467)
Q Consensus       233 i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R  312 (467)
                      +++++|+|++|.+-+   +++|+++|++||+++++|++|.......    ..........+.-.+++.|.+|.++.|. .
T Consensus       198 v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~----~~~~~~~~~~~~vd~~~~s~hK~~~~p~-g  269 (445)
T d3bc8a1         198 LHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSKC----MHLIQQGARVGRIDAFVQSLDKNFMVPV-G  269 (445)
T ss_dssp             EEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH----HHHHHHHHHHSCCCEEEEEHHHHHSCCS-S
T ss_pred             EEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhhc----cccchhccCcCCcceEEecCccccccCC-C
Confidence            889999999999876   5577778999999999999987543210    1111111223334477888899877443 2


Q ss_pred             cceEEEecCCHHHHhh
Q 012238          313 IGAMNVVCSSSDLAAR  328 (467)
Q Consensus       313 iG~~~~v~~~~~~~~~  328 (467)
                      .|+++  ..+.+..+.
T Consensus       270 ~~~l~--~~~~~~~~~  283 (445)
T d3bc8a1         270 GAIIA--GFNEPFIQD  283 (445)
T ss_dssp             CEEEE--ESCHHHHHH
T ss_pred             Cceee--eCChHHHHH
Confidence            45553  577776665

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.65  E-value=1.4e-14  Score=144.20  Aligned_cols=273  Identities=13%  Similarity=0.017  Sum_probs=164.1

Q ss_pred             cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeee-ecCCCCCCChhhHHHHHHcC--CCCcEEE
Q 012238          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRY-YDPKTVGLDFEGMIADIKAA--PGGSFIL  233 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~-~~~~~~~~d~~~l~~~l~~~--~~~~~~i  233 (467)
                      ..|++.++.++........++++|+++.-.+..+...+...|+.++.++. .+++.+.+|+++|++.+++.  ...+.++
T Consensus       136 ~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v  215 (434)
T d2z67a1         136 PISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCV  215 (434)
T ss_dssp             SSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEE
T ss_pred             CcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceEE
Confidence            44555555554222222347899999999999999999999999988864 23556789999999999753  2466788


Q ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCcc
Q 012238          234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI  313 (467)
Q Consensus       234 ~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri  313 (467)
                      +..+|+|++|.+.+.   ++|+++|++||+++++|++|......     ............-.+++.|++|.++.+ ...
T Consensus       216 ~~~~~~~~~g~~~~l---~~i~~~~~~~~~~l~vD~a~g~~~~~-----~~~~~~~~~~~~~D~~~~s~hK~l~~~-~g~  286 (434)
T d2z67a1         216 LSTLTFFPPRNSDDI---VEIAKICENYDIPHIINGAYAIQNNY-----YLEKLKKAFKYRVDAVVSSSDKNLLTP-IGG  286 (434)
T ss_dssp             EEESSCCTTBCCCCH---HHHHHHHHHHTCCEEEECTTTTTCHH-----HHHHHHHHHTSCCSEEEEEHHHHHCCC-SSC
T ss_pred             EeccCcCCCccccCH---HHHHHHHHHhCCeEEEeccchhhhhh-----ccccccccccCCcceEEEcCccccccC-CCc
Confidence            889999999998774   57777899999999999998643311     001111112223456788999987743 223


Q ss_pred             ceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          314 GAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  393 (467)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~  393 (467)
                      |++.  +.+++.+++            +...........+.....+....+..        +.++...++..++.+++.+
T Consensus       287 ~~~~--~~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~l~~~~~--------~g~~~~~~~~~~~a~~l~~  344 (434)
T d2z67a1         287 GLVY--STDAEFIKE------------ISLSYPGRASATPVVNTLVSLLSMGS--------KNYLELVKNQKNSKKLLDE  344 (434)
T ss_dssp             EEEE--ESCHHHHHH------------HHTTSCSCBCSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred             cccc--cCcHHHHHH------------HHhhcccccccchHHHHHHHHHHHHH--------hcchhHHHHHHHHHHHHHH
Confidence            4443  577777766            55443332333333333333333221        1233444444455555555


Q ss_pred             HhhhccCCCCCcccccC--CcceEEecCCCHHHHHHHHHcccEEEeCC------------C-------eEEecc-CChhh
Q 012238          394 SLSAKDKSGKDWSFILR--QIGMFSFTGLNKAQSDNMTNKWHVYMTKD------------G-------RISLAG-LSLAK  451 (467)
Q Consensus       394 ~l~~~~g~~~~~~~~~~--~~g~f~~~~l~~~~~~~ll~~~gI~v~~g------------g-------Ris~~~-~~~~~  451 (467)
                      .|+ ++.-...+.....  ...+++..+.+...+...|.+.||.....            +       |++.+. .++++
T Consensus       345 ~L~-~l~~~~g~~ll~~~~~~~~~~~~~~~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~ed  423 (434)
T d2z67a1         345 LLN-DLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTED  423 (434)
T ss_dssp             HHH-HHHHHSSCCBCCCCCSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHH
T ss_pred             HHH-HhhhhcCceecCCCCCceeeeecCCCHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCCCHHH
Confidence            554 3200000233322  22334445666666554555568853221            1       665442 37899


Q ss_pred             HHHHHHHHHH
Q 012238          452 CEYLADAIID  461 (467)
Q Consensus       452 i~~~~~~l~~  461 (467)
                      +++++++|++
T Consensus       424 ID~~i~~L~k  433 (434)
T d2z67a1         424 IVNSVSKLEK  433 (434)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999976

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=1e-13  Score=134.27  Aligned_cols=212  Identities=13%  Similarity=0.053  Sum_probs=147.2

Q ss_pred             CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCCC
Q 012238          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVP  200 (467)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~  200 (467)
                      .+....|.+.++++-.+        +..++  +++|+.|+..+  +++.+.+||+|+++...|......++    ..|++
T Consensus        57 nPt~~~le~~la~LEg~--------~~a~~--~~SGMaAi~~~--l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~  124 (391)
T d1cl1a_          57 TLTHFSLQQAMCELEGG--------AGCVL--FPCGAAAVANS--ILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVT  124 (391)
T ss_dssp             CHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCE
T ss_pred             ChhHHHHHHHHHHHhCC--------ccEEE--eccccceeeeh--hhcccCCCCeEEEecccccchhhhhhhcccccccc
Confidence            45567788888888432        34555  79999999987  67778899999999999987665554    56776


Q ss_pred             eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCCC
Q 012238          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGS  278 (467)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~--~~~~li~Deay~~~~~~~  278 (467)
                      +..++.       .|.+.+++.++   ++++++++-+|.||+..+.+.+   +++++|++  +|+++|+|..+.....- 
T Consensus       125 ~~~~d~-------~d~~~~~~~i~---~~t~~i~~EtpsNP~l~v~Di~---~i~~~a~~~~~g~~~vVDnT~atP~~~-  190 (391)
T d1cl1a_         125 TSWFDP-------LIGADIVKHLQ---PNTKIVFLESPGSITMEVHDVP---AIVAAVRSVVPDAIIMIDNTWAAGVLF-  190 (391)
T ss_dssp             EEEECT-------TCGGGGGGTCC---TTEEEEEEESSCTTTCCCCCHH---HHHHHHHHHCTTCEEEEECTTTTTTSS-
T ss_pred             cccccC-------ccccccccccc---cccceeeecccCcccccccccH---HHHHHHHhccCCcEEEEeccccchhhh-
Confidence            666543       46777877776   7889999999999999999877   45555655  59999999997654432 


Q ss_pred             CCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR  358 (467)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  358 (467)
                         .+  +    +.+ -.|++.|.+|.++-.|-=+|.++  +.+++..+.            +...........++..+.
T Consensus       191 ---~P--l----~~G-aDivvhS~TKy~~GhsdvlgG~v--v~~~~~~~~------------~~~~~~~~G~~~~p~~a~  246 (391)
T d1cl1a_         191 ---KA--L----DFG-IDVSIQAATKYLVGHSDAMIGTA--VCNARCWEQ------------LRENAYLMGQMVDADTAY  246 (391)
T ss_dssp             ---CG--G----GGT-CSEEEEETTTTTTCSSSCCCEEE--EECTTTHHH------------HHHHHHHTTCCCCHHHHH
T ss_pred             ---cc--c----ccc-cceEEeecchhccccccccccce--ecccccccc------------chhhhhcccccCCchhhh
Confidence               11  1    222 35889999999987776667765  345555555            333333334455666655


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      .+..-|++          +..+.++..++...+.+.|+
T Consensus       247 ll~rgl~T----------L~lR~~~~~~nA~~vA~~L~  274 (391)
T d1cl1a_         247 ITSRGLRT----------LGVRLRQHHESSLKVAEWLA  274 (391)
T ss_dssp             HHHHHHTT----------HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccchh----------HHHHHHHHHHHHHHHHHHHH
Confidence            55544443          33455556666777777876

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=2.1e-14  Score=137.86  Aligned_cols=322  Identities=18%  Similarity=0.224  Sum_probs=204.8

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC---Ccc---hHHH---HHHHHHHHhCCCCcccccCceee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP---IEG---LAAF---NKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~---~~G---~~~l---r~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      +.|+|-..++       ++++.|++++...+...+..+|+.   ..|   +.++   -...|+.+++.        +-+-
T Consensus        27 ~~i~LiaSEN-------~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a--------~~an   91 (416)
T d1dfoa_          27 EHIELIASEN-------YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGA--------DYAN   91 (416)
T ss_dssp             HSEECCTTCC-------CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--------SEEE
T ss_pred             cCceEecCcc-------cCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCC--------Ccce
Confidence            6799987654       237899999988886544444432   122   2333   33334444443        2334


Q ss_pred             eecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH---Hh--hCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCC
Q 012238          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI---FN--DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~---~~--~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (467)
                      ||..+|+.|...+  +.+++.|||+|+..++....+..-   +.  ....+.+.++++  .++.+|.+++++..++  .+
T Consensus        92 Vqp~SGs~AN~av--~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d--~~~~IDyd~l~~~a~~--~k  165 (416)
T d1dfoa_          92 VQPHSGSQANFAV--YTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGID--ATGHIDYADLEKQAKE--HK  165 (416)
T ss_dssp             CCCSSHHHHHHHH--HHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBC--SSSSBCHHHHHHHHHH--HC
T ss_pred             eecccCccHHHHH--HHHhcCCCCeeeeccccccccccccccccccCceEEEEecccC--CccCccHHHHHHHHHH--hc
Confidence            5678899988887  777889999999999887765432   11  222355556653  3567999999999887  45


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc
Q 012238          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (467)
Q Consensus       230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (467)
                      +++|+...-.+|-  .++   ++++.++|.+.|.++++|.++. ++..++.-.+  ++    +.  -.++..|.+|+|  
T Consensus       166 PklIi~G~S~y~r--~~d---~~~~reiad~vga~l~~D~aH~~GLIa~g~~~s--P~----~~--aDvvt~tThKtl--  230 (416)
T d1dfoa_         166 PKMIIGGFSAYSG--VVD---WAKMREIADSIGAYLFVDMAHVAGLVAAGVYPN--PV----PH--AHVVTTTTHKTL--  230 (416)
T ss_dssp             CSEEEEECSSCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCC--CT----TT--SSEEEEESSSTT--
T ss_pred             cceEEeccccccc--ccC---HHHHHHHHHhcCceEEcchhhhhcceeccccCC--cc----cc--cceeeeehhhcc--
Confidence            5677776655553  333   5677777999999999999954 3332221111  11    11  248899999997  


Q ss_pred             CCCccceEEEecC--CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHH-HHHhCChhhHHHHHHHHHHHHHHHH
Q 012238          309 YAERIGAMNVVCS--SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV-ANVVGNPALFDEWKAEMEMMAGRIK  385 (467)
Q Consensus       309 ~G~RiG~~~~v~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~L~~~~~~~~~~~~l~~~~~~~~  385 (467)
                      +|-|-|.+.  +.  .+++.++            +.+...+...+.|.....++ +.+|.+ ..    ..+.....++..
T Consensus       231 rGPrggiI~--~~~~~~~~~~~------------i~~avfPg~qggp~~~~iaa~Aval~E-a~----~~~fk~Y~~qvv  291 (416)
T d1dfoa_         231 AGPRGGLIL--AKGGSEELYKK------------LNSAVFPGGQGGPLMHVIAGKAVALKE-AM----EPEFKTYQQQVA  291 (416)
T ss_dssp             CCCSCEEEE--ESSCCHHHHHH------------HHHHHTTTTCSSCCHHHHHHHHHHHHH-TT----SHHHHHHHHHHH
T ss_pred             cCCCceEEE--eccchHhHHHH------------HHhhhCcccccCccHHHHHHHHHHHHH-Hc----CHHHHHHHHHHH
Confidence            577778885  43  3566665            65555555444333322222 222221 11    123456777888


Q ss_pred             HHHHHHHHHhhhccCCCCCcccccCCcceE-Eec-----CCCHHHHHHHHHcccEEEeC----C---------C-eEEec
Q 012238          386 NVRQKLFDSLSAKDKSGKDWSFILRQIGMF-SFT-----GLNKAQSDNMTNKWHVYMTK----D---------G-RISLA  445 (467)
Q Consensus       386 ~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f-~~~-----~l~~~~~~~ll~~~gI~v~~----g---------g-Ris~~  445 (467)
                      ++.+.|.+.|. +.|    +++.......+ +++     +++...++.+|++.||.+..    +         | ||+..
T Consensus       292 ~NA~~La~~L~-~~G----~~iv~ggTdnHlvlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~  366 (416)
T d1dfoa_         292 KNAKAMVEVFL-ERG----YKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTP  366 (416)
T ss_dssp             HHHHHHHHHHH-HTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECH
T ss_pred             HHHHHHHHHHH-hCC----cccccCCCCCceeEEEecccCCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCH
Confidence            88999999999 888    45554322223 344     45778899999999998743    2         3 88743


Q ss_pred             -----cCChhhHHHHHHHHHHHHHh
Q 012238          446 -----GLSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       446 -----~~~~~~i~~~~~~l~~~l~~  465 (467)
                           ++.+++++++.+.|.++++.
T Consensus       367 a~TtrG~~e~d~~~iA~~I~~~l~~  391 (416)
T d1dfoa_         367 AITRRGFKEAEAKELAGWMCDVLDS  391 (416)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHc
Confidence                 35789999999999998864

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.63  E-value=1.3e-13  Score=136.60  Aligned_cols=337  Identities=15%  Similarity=0.097  Sum_probs=191.2

Q ss_pred             CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      .+.+.||+..|.--..-|.  -.|.|.+++++.++... ....+..-..++.+.+.+... .      .+.+.+  +++|
T Consensus        50 ~G~~ylD~~~~~~~~~lGh--~hp~i~~ai~~~~~~~~-~~~~~~~~~~~la~~~~~~~~-~------~~~v~f--~~sG  117 (427)
T d2gsaa_          50 DGNRYIDYVGTWGPAICGH--AHPEVIEALKVAMEKGT-SFGAPCALENVLAEMVNDAVP-S------IEMVRF--VNSG  117 (427)
T ss_dssp             TSCEEEESSGGGTTTTTCB--TCHHHHHHHHHHHTTCS-CCSSCCHHHHHHHHHHHHHST-T------CSEEEE--ESSH
T ss_pred             CCCEEEEechhHHHHhccC--CcHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHhhCC-c------cccccc--cCCc
Confidence            3468999987754222233  36889999998886543 222232222233333333321 1      357777  8999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh--------hCCCCeE---EeeeecC--CCCCCChhhHHHHHHcCC
Q 012238          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN--------DARVPWS---EYRYYDP--KTVGLDFEGMIADIKAAP  227 (467)
Q Consensus       161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~--------~~G~~~~---~v~~~~~--~~~~~d~~~l~~~l~~~~  227 (467)
                      ++|++.+.++........+|+...-+|.+......        ..+....   ..+...+  .....|++.+++.+++.+
T Consensus       118 seA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~  197 (427)
T d2gsaa_         118 TEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENP  197 (427)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTST
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCC
Confidence            99999996665555555788988888865422111        1111100   0000000  001258999999998765


Q ss_pred             CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc
Q 012238          228 GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (467)
Q Consensus       228 ~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (467)
                      .+...+++-.-+--.|. .++.+-+++|.++|++||+++|.||+..++..+.    .+.. ...+-.+++++   ++|.+
T Consensus       198 ~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~----~~~~-~~~gi~PDi~~---~gK~l  269 (427)
T d2gsaa_         198 GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAY----GGVQ-EKFGVTPDLTT---LGKII  269 (427)
T ss_dssp             TTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBT----TCHH-HHTTCCCSEEE---ECGGG
T ss_pred             CCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecc----cchH-HhcCCCHHHHh---hhhcc
Confidence            66666665543333454 4567789999999999999999999988875431    2222 22233345443   46888


Q ss_pred             ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc---cCccCCCchHHHHHHHHHhC---ChhhHHHHHHHHHHH
Q 012238          307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA---RPMYSNPPVHGARIVANVVG---NPALFDEWKAEMEMM  380 (467)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~L~---~~~~~~~~~~~l~~~  380 (467)
                      + .|.-+|.++   +.+++.+.            +....   ...+.+.++++..++...|+   +..+    .+.+++.
T Consensus       270 g-gG~p~~a~~---~~~~i~~~------------~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l----~~~~~~~  329 (427)
T d2gsaa_         270 G-GGLPVGAYG---GKREIMQL------------VAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGT----YEYLDQI  329 (427)
T ss_dssp             G-TTSCCEEEE---ECHHHHTT------------BTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTH----HHHHHHH
T ss_pred             C-CCcceeeee---ehHHHHHH------------hcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhH----HhhhhHH
Confidence            7 788888874   77777776            43211   11233455666566555442   3222    1222333


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCcccccCCcceE-E-ecC-C----------CH----HHHHHHHHcccEEEeCCC--e
Q 012238          381 AGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF-S-FTG-L----------NK----AQSDNMTNKWHVYMTKDG--R  441 (467)
Q Consensus       381 ~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f-~-~~~-l----------~~----~~~~~ll~~~gI~v~~gg--R  441 (467)
                      .+++   ++.+.+..+ +.+.+  +. ....++++ + |.. .          +.    .+...+++ +||++.|++  +
T Consensus       330 g~~l---~~~L~~l~~-~~~~~--~~-v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~-~Gv~l~p~~~~~  401 (427)
T d2gsaa_         330 TKRL---SDGLLAIAQ-ETGHA--AC-GGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPSQFEA  401 (427)
T ss_dssp             HHHH---HHHHHHHHH-HTTCC--CE-EEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTTSC
T ss_pred             HHHH---HHHHHHHHh-hcCCC--cE-EcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHH-CCEEECCCCCcc
Confidence            3333   233333333 44421  12 22234443 2 211 0          11    23445665 599999986  3


Q ss_pred             --EEeccCChhhHHHHHHHHHHHHHhc
Q 012238          442 --ISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       442 --is~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                        +++.. +++++++++++++++++++
T Consensus       402 ~~~~l~~-Te~dId~~l~al~~al~~L  427 (427)
T d2gsaa_         402 GFTSLAH-TEEDIDATLAAARTVMSAL  427 (427)
T ss_dssp             EECCTTC-CHHHHHHHHHHHHHHHTCC
T ss_pred             eeCCCCC-CHHHHHHHHHHHHHHHHhC
Confidence              34443 8999999999999999875

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.61  E-value=4.6e-13  Score=130.83  Aligned_cols=195  Identities=16%  Similarity=0.088  Sum_probs=139.6

Q ss_pred             CCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-hCCCC
Q 012238          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGA  178 (467)
Q Consensus       100 p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~~~gd  178 (467)
                      |...+.-.+++.+.++.+. .-+..-.-..+|.+.+|++++.+        +++.  +++||.|+.++  +.++ +.+||
T Consensus         9 p~~~~~~~~~~~~~l~~g~-~~~~~g~~v~~fE~~~a~~~g~~--------~~v~--~~SGt~Al~la--l~~l~~~~gd   75 (384)
T d1b9ha_           9 PQYDDAERNGLVRALEQGQ-WWRMGGDEVNSFEREFAAHHGAA--------HALA--VTNGTHALELA--LQVMGVGPGT   75 (384)
T ss_dssp             SCCCHHHHHHHHHHHHTSC-CBTTTCSHHHHHHHHHHHHTTCS--------EEEE--ESCHHHHHHHH--HHHTTCCTTC
T ss_pred             CCCCHHHHHHHHHHHHcCC-eeecCCHHHHHHHHHHHHHHCcC--------eEEE--eCCHHHHHHHH--HHHcCCCCCC
Confidence            3345666778888887653 21223345789999999996443        5666  89999999998  3332 56999


Q ss_pred             EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 012238          179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI  258 (467)
Q Consensus       179 ~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~  258 (467)
                      +|++|..+|......+...|++++.++.+ +.++.+|++.+++.+.   ++++++++.   +..|...+   +.+|.++|
T Consensus        76 eVi~p~~t~~a~~~ai~~~g~~p~~~d~~-~~~~~~d~~~~~~~i~---~~tk~i~~~---~~~g~~~d---~~~i~~~~  145 (384)
T d1b9ha_          76 EVIVPAFTFISSSQAAQRLGAVTVPVDVD-AATYNLDPEAVAAAVT---PRTKVIMPV---HMAGLMAD---MDALAKIS  145 (384)
T ss_dssp             EEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCCBCHHHHHHHCC---TTEEEECCB---CGGGCCCC---HHHHHHHH
T ss_pred             EEEEecccccccccccccccccccccccc-ccccccchhhhccccc---ccccccccc---cccccccc---cccchhhh
Confidence            99999999999999999999999999984 5678899999999887   677787644   55566555   45677779


Q ss_pred             HhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhh
Q 012238          259 QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       259 ~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                      +++++++|+|.+....+.-    +...   .-..++-.++..+.+|.++ .|. -|.++  +.++++.+.
T Consensus       146 ~~~~i~lieD~a~a~ga~~----~g~~---~g~~g~~~~~Sf~~~K~i~-~g~-GG~i~--t~~~~~~~~  204 (384)
T d1b9ha_         146 ADTGVPLLQDAAHAHGARW----QGKR---VGELDSIATFSFQNGKLMT-AGE-GGAVV--FPDGETEKY  204 (384)
T ss_dssp             HHHTCCBCEECTTCTTCEE----TTEE---GGGSSSCEEEECCTTSSSC-SSS-CEEEE--ECTTCHHHH
T ss_pred             hhhhhhhhhhhceeccccc----CCEe---cCcccccceeccccccccc-ccc-cchhh--hhhHHHHHH
Confidence            9999999999995433321    1111   1123445566666789886 443 45553  688888776

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.60  E-value=1e-13  Score=131.57  Aligned_cols=275  Identities=17%  Similarity=0.168  Sum_probs=177.1

Q ss_pred             HHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCCCeEEee
Q 012238          130 AFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARVPWSEYR  205 (467)
Q Consensus       130 ~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~~~v~  205 (467)
                      .|.+.+|++-++        +..++  +++|+.|+..+  ++..+.+||+|+++.+.|.....    .++..|+++..++
T Consensus         2 aLE~~la~Leg~--------~~a~~--~sSGMaAi~~~--l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d   69 (331)
T d1pffa_           2 ALEGKIAKLEHA--------EACAA--TASGMGAIAAS--VWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFID   69 (331)
T ss_dssp             HHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHhCC--------CeEEE--ECCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEec
Confidence            477889988543        34555  79999999887  67778999999999999976443    4567898888775


Q ss_pred             eecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhH
Q 012238          206 YYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS  285 (467)
Q Consensus       206 ~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~  285 (467)
                      .       -|++.++++++   ++++++++.+|.||+..+.+.+.+.+++  ++++|+++|+|..+.....-.      +
T Consensus        70 ~-------~d~~~~~~~i~---~~t~~i~~Es~~np~~~v~d~~~~~~~~--a~~~~~~~vVDnT~atp~~~~------p  131 (331)
T d1pffa_          70 M-------AVPGNIEKHLK---PNTRIVYFETPANPTLKVIDIEDAVKQA--RKQKDILVIVDNTFASPILTN------P  131 (331)
T ss_dssp             T-------TSTTHHHHTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHH--TTSSSCEEEEECTTTHHHHCC------G
T ss_pred             c-------cchhhHhhhcc---cccceeeeecccccccccccchhhhhhh--hcccCceEEeecccccccccc------c
Confidence            5       37788888887   7899999999999999999877544442  467899999999975432211      1


Q ss_pred             HHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhC
Q 012238          286 VRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVG  365 (467)
Q Consensus       286 ~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~  365 (467)
                      +    +.+ -.|++.|.+|.++-.|--+|.++  +.+++....        ..  ............++.....+..-| 
T Consensus       132 l----~~G-aDiVv~S~TKy~~Gh~d~~~G~v--~~~~~~~~~--------~~--~~~~~~~~G~~l~p~~a~ll~rgl-  193 (331)
T d1pffa_         132 L----DLG-VDIVVHSATKYINGHTDVVAGLV--CSRADIIAK--------VK--SQGIKDITGAIISPHDAWLITRGT-  193 (331)
T ss_dssp             G----GGT-CSEEEEETTTTTSSSSSCCCEEE--EECHHHHHH--------HH--HTCCCCCCCCCCCHHHHHHHHHHH-
T ss_pred             c----ccC-CCEEEecchhhcCCCCccccccc--cccccchhh--------hh--hhhhhhccCCCCCHHHHHHHHHHH-
Confidence            1    222 35889999999987777777765  355544433        00  122223334455555544443322 


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC------CCCcc----------cccCCcceEEecCCCHHHHHHHH
Q 012238          366 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS------GKDWS----------FILRQIGMFSFTGLNKAQSDNMT  429 (467)
Q Consensus       366 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~------~~~~~----------~~~~~~g~f~~~~l~~~~~~~ll  429 (467)
                               +.+..+.++..++...+.+.|+ +...      |+ +.          .....|+++.+.--+.+...+++
T Consensus       194 ---------~Tl~~Rm~~~~~nA~~lA~~L~-~hp~V~~V~yPg-l~s~p~~~~~~~~~~~~g~l~sf~l~~~~~~~~f~  262 (331)
T d1pffa_         194 ---------LTLDMRVKRAAENAQKVAEFLH-EHKAVKKVYYPG-LPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVL  262 (331)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHHH-HCTTCCCEECTT-STTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHhhh-hCCcEEeecccc-ccCccHHHHHhhcccccCcccceeeccHHHHHHHH
Confidence                     2355566666777778888887 5432      11 00          01123555544322455556666


Q ss_pred             HcccEE---EeCC-------------------------C------eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238          430 NKWHVY---MTKD-------------------------G------RISLAGLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       430 ~~~gI~---v~~g-------------------------g------Ris~~~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +.-.++   +.-|                         |      |||++-   |+.+.+++-|.++++.+
T Consensus       263 d~l~lf~~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGl---E~~~DLi~Dl~~AL~~i  330 (331)
T d1pffa_         263 DNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGC---ENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             HTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHTC
T ss_pred             HhCCcceecccCCCCceeEeCccccccccCCHHHHHhcCCCcCeEEEEeee---CCHHHHHHHHHHHHHHh
Confidence            553321   1111                         2      999997   67777778888887764

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.58  E-value=1.2e-12  Score=126.67  Aligned_cols=221  Identities=13%  Similarity=0.109  Sum_probs=151.9

Q ss_pred             CcCCC--CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----H
Q 012238          120 KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----I  193 (467)
Q Consensus       120 ~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~----~  193 (467)
                      +.|.-  .+....|.+.++++-.+        +..++  +++|+.|+..+  ++..+.+||.|++++..|.....    .
T Consensus        51 ~~YsR~~nPT~~~le~~la~LEg~--------~~a~~--~sSGmaAi~~~--~l~l~~~gd~vv~~~~~yg~t~~~~~~~  118 (394)
T d1e5ea_          51 YIYTRLGNPTVSNLEGKIAFLEKT--------EACVA--TSSGMGAIAAT--VLTILKAGDHLISDECLYGCTHALFEHA  118 (394)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTH
T ss_pred             ceecCCCCHHHHHHHHHHHHHhCC--------cceee--eccchHHHHHH--HHhhcccccccccccceeehhhHhHHHH
Confidence            44542  44567788888888543        24444  69999999987  67778899999999999965543    4


Q ss_pred             HhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH-hcCCeeEEeccCC
Q 012238          194 FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ-EKNHIPFFDVAYQ  272 (467)
Q Consensus       194 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~-~~~~~li~Deay~  272 (467)
                      +...|+++..++.       -|.+.+++.++   +++++|++-+|.|||..+.+.+   ++++.++ ++|+++|+|..|.
T Consensus       119 ~~~~gi~~~~~d~-------~d~~~~~~~i~---~~t~lv~~Etp~NP~l~v~Di~---~~~~~~~~~~g~~vvvDnT~a  185 (394)
T d1e5ea_         119 LTKFGIQVDFINT-------AIPGEVKKHMK---PNTKIVYFETPANPTLKIIDME---RVCKDAHSQEGVLVIADNTFC  185 (394)
T ss_dssp             HHHTTCEEEEECT-------TSTTHHHHHCC---TTEEEEEEESSCTTTCCCCCHH---HHHHHHHTSTTCEEEEECTTT
T ss_pred             hhccceeeeccCC-------CCHHHHHHhhc---ccccEEEEeccCCcceeeehhh---hhhhccccccCeEEEecCccc
Confidence            5578888888765       46788888887   7889999999999999998876   4555455 4689999999976


Q ss_pred             CCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCC
Q 012238          273 GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNP  352 (467)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  352 (467)
                      ....-    .+  +    +.+ -.|++.|.+|.++-.|.=+|.++  +.+.+....        .+  +..+.......+
T Consensus       186 tP~~~----~P--l----~~G-aDiVvhS~TKy~~GhsDv~~G~v--~~~~~~~~~--------~~--~~~~~~~~G~~l  242 (394)
T d1e5ea_         186 SPMIT----NP--V----DFG-VDVVVHSATKYINGHTDVVAGLI--CGKADLLQQ--------IR--MVGIKDITGSVI  242 (394)
T ss_dssp             CTTTC----CG--G----GGT-CSEEEEETTTTTTCSSCCCCEEE--EECHHHHHH--------HH--HTCCCCCCCCCC
T ss_pred             CcccC----Cc--h----hcC-CCEEEechhhhcCCCcccccccc--cchhhHHHH--------HH--HHHHHHhhCCCC
Confidence            54432    11  1    222 35889999999987777677764  356665554        10  222233334456


Q ss_pred             chHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238          353 PVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  399 (467)
Q Consensus       353 ~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~  399 (467)
                      ++.....+..-|++          +..+.++..++...+.+.|+ +.
T Consensus       243 sp~~a~ll~rgl~T----------L~lRm~r~~~nA~~lA~~L~-~h  278 (394)
T d1e5ea_         243 SPHDAWLITRGLST----------LNIRMKAESENAMKVAEYLK-SH  278 (394)
T ss_dssp             CHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHH-TC
T ss_pred             ChHHHHHHHhhchh----------HHHHHHHHHHHHHHHHHHHh-hc
Confidence            66666666555544          34455666667777788887 43

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=4.2e-13  Score=133.45  Aligned_cols=354  Identities=13%  Similarity=0.039  Sum_probs=209.7

Q ss_pred             HHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccc-cCc--
Q 012238           75 EAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK-EQR--  151 (467)
Q Consensus        75 ~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~-~~~--  151 (467)
                      +++..+.+ ..+||.....      .+.++.+.+.+.+.++.+. ..+...+...++.+.+.+++....|.+-. .+.  
T Consensus        46 d~l~~dg~-~~~n~asf~~------t~~~~~~~~l~~~~~~~N~-~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~  117 (450)
T d1pmma_          46 DELYLDGN-ARQNLATFCQ------TWDDENVHKLMDLSINKNW-IDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAV  117 (450)
T ss_dssp             HHGGGSCC-GGGBCSCCSC------CCCCHHHHHHHHHTTTCBT-TCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCS
T ss_pred             HHhccCCC-cccccccccc------CCCCHHHHHHHHHHHhcCC-CCcccCccHHHHHHHHHHHHHHHhCCCccccCCCc
Confidence            34444554 3467765432      2346778888888776543 33333334445555444444332222111 111  


Q ss_pred             eeeeecCCchhHHHHHHHHHHH-h--------CCC-CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHH
Q 012238          152 VATVQGLSGTGSLRLAAALIER-Y--------FPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA  221 (467)
Q Consensus       152 i~~~~t~ggt~al~l~~~~l~~-~--------~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~  221 (467)
                      =.+  |.|||+|+.++...... +        .++ ..++++...+..+...++.+|++++.++.+ +.++.+|++.+++
T Consensus       118 G~~--t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~-~~~~~~d~~~L~~  194 (450)
T d1pmma_         118 GTN--TIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMR-PGQLFMDPKRMIE  194 (450)
T ss_dssp             EEE--ESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCB-TTBCSCCHHHHHH
T ss_pred             Cee--eCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeec-CCCCcCcHHHHHH
Confidence            134  79999999987322211 0        122 357888888899999999999999999985 4568899999999


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH---HHhcCCeeEEeccCCCCCC--CCCCCChhHHHHHHhcCCeE
Q 012238          222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV---IQEKNHIPFFDVAYQGFAS--GSLDNDASSVRLFATRGMEL  296 (467)
Q Consensus       222 ~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~---~~~~~~~li~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~  296 (467)
                      .++   +++++++.+.++|.||.+-+.+++.+|++.   |+++|+++.+|.+|.++..  ...+ ..+    ......-.
T Consensus       195 ~i~---~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~-~~~----~~~~~~aD  266 (450)
T d1pmma_         195 ACD---ENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPD-IVW----DFRLPRVK  266 (450)
T ss_dssp             HCC---TTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTT-CCC----STTSTTEE
T ss_pred             Hhh---hCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechh-hhh----hhccccee
Confidence            998   688899999999999999999877766654   6779999999999877542  1000 000    00111245


Q ss_pred             EEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHH-hhccCc--cCCCc--hHHHHHHHHHhCChhhHH
Q 012238          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLK-RLARPM--YSNPP--VHGARIVANVVGNPALFD  371 (467)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~--~~~~~--~~~~~~~~~~L~~~~~~~  371 (467)
                      -+..|.+|.++.| ..+||+.  ..+++......... .   ..+. ......  .+...  ...+.+....+       
T Consensus       267 Si~~s~HK~~~~p-~g~g~l~--~r~~~~~~~~~~~~-~---~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~-------  332 (450)
T d1pmma_         267 SISASGHKFGLAP-LGCGWVI--WRDEEALPQELVFN-V---DYLGGQIGTFAINFSRPAGQVIAQYYEFLRL-------  332 (450)
T ss_dssp             EEEEETTTTTCCC-SSCEEEE--ESSGGGSCGGGCEE-E---EETTEEEEECCSCCSCBSHHHHHHHHHHHHH-------
T ss_pred             EeecChhhccCCC-CCeeEEE--ecChhhhhhhcccc-c---CcCCCCcCCCcccCccchHHHHHHHHHHhhh-------
Confidence            6788899976533 4479986  45554432200000 0   0000 000000  11111  11122221111       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccC---Cc--ceEEec-------CCCHHHHHHHHHcccEEE---
Q 012238          372 EWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR---QI--GMFSFT-------GLNKAQSDNMTNKWHVYM---  436 (467)
Q Consensus       372 ~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~---~~--g~f~~~-------~l~~~~~~~ll~~~gI~v---  436 (467)
                       -.+.+++..++..+..+++.+.|+ +.+.   ++++.+   ..  ..+.|-       +++...+...|+++|..+   
T Consensus       333 -G~~G~~~~~~~~~~la~~l~~~L~-~~~~---~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~  407 (450)
T d1pmma_         333 -GREGYTKVQNASYQVAAYLADEIA-KLGP---YEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAF  407 (450)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHH-TTSC---EEEEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEE
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHH-hCCC---eEEEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeecc
Confidence             134467788888889999999998 7652   454422   11  223332       345555555556668544   


Q ss_pred             -eCC-C------eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238          437 -TKD-G------RISLAG-LSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       437 -~~g-g------Ris~~~-~~~~~i~~~~~~l~~~l~~~  466 (467)
                       .|. .      |+.+.. .+++.++.+++.|+++++.+
T Consensus       408 ~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l  446 (450)
T d1pmma_         408 TLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYL  446 (450)
T ss_dssp             ECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence             232 1      888754 36788999999999998865

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.56  E-value=1.9e-13  Score=133.08  Aligned_cols=327  Identities=15%  Similarity=0.143  Sum_probs=207.2

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC------CCcchHHHHHHH---HHHHhCCCCcccccCceee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAAFNKVT---AELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~------~~~G~~~lr~ai---a~~l~~~~~~~~~~~~i~~  154 (467)
                      ..|+|-..++       ++++.|++++...+...+..+|+      ...-+.++....   |..+++..   - ...-+-
T Consensus        32 ~~l~LIaSEN-------~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~---~-~~~~an  100 (470)
T d1rv3a_          32 VGLELIASEN-------FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLD---P-QCWGVN  100 (470)
T ss_dssp             SSEECCTTCC-------CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCC---T-TTEEEE
T ss_pred             cCceEecCCC-------cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCC---h-hhcccc
Confidence            6799987665       23889999998888654444442      223344443333   33334321   0 113445


Q ss_pred             eecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----------hhCCCCeEEeeeecCCCCCCChhhHHHHHH
Q 012238          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----------NDARVPWSEYRYYDPKTVGLDFEGMIADIK  224 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----------~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~  224 (467)
                      ||..+|+.|...+  +.+++.|||+|+..+....++..--          .....+...++++ ++++.+|.+++++..+
T Consensus       101 Vqp~SGs~An~av--~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~-~~~~~IDyd~l~~~a~  177 (470)
T d1rv3a_         101 VQPYSGSPANFAV--YTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVN-PDTGYIDYDRLEENAR  177 (470)
T ss_dssp             CCCSSHHHHHHHH--HHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBC-TTTCSBCHHHHHHHHH
T ss_pred             ccccCCccHHHHH--HHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEe-cccCcccHHHHHHHHH
Confidence            6789999999888  7778899999999986655443211          1112356677774 4567899999999988


Q ss_pred             cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCc
Q 012238          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (467)
Q Consensus       225 ~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S  303 (467)
                      +  .++++|+...-.+|-  .+   +++++.++|.+.|.++++|.++. ++..++.-.+  ++    +.  -.|+..|..
T Consensus       178 ~--~kPklIi~G~S~y~r--~~---d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~s--Pl----~~--aDvvt~tTH  242 (470)
T d1rv3a_         178 L--FHPKLIIAGTSCYSR--NL---DYGRLRKIADENGAYLMADMAHISGLVVAGVVPS--PF----EH--CHVVTTTTH  242 (470)
T ss_dssp             H--HCCSEEEECCSSCCS--CC---CHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCC--GG----GT--CSEEEEESS
T ss_pred             h--hCcceEeechhhccc--cC---CHHHHHHHHhccCCeEEecchhhhhhccccccCC--hh----he--eeeeeeehh
Confidence            6  456688877766664  23   35567777999999999999964 3433321111  12    22  258899999


Q ss_pred             cCcccCCCccceEEEecCCH--------------HHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhh
Q 012238          304 KNLGLYAERIGAMNVVCSSS--------------DLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL  369 (467)
Q Consensus       304 K~~~~~G~RiG~~~~v~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~  369 (467)
                      |+|  +|-|-|.|.  +...              ++.+.            +....-+...+.|...+.++.++    .+
T Consensus       243 Ktl--rGPrgGiI~--~~~~~~~~~~~~~~~~~~~~~~~------------i~~avFPg~qggph~~~IAa~Av----a~  302 (470)
T d1rv3a_         243 KTL--RGCRAGMIF--YRRGVRSVDPKTGKEILYNLESL------------INSAVFPGLQGGPHNHAIAGVAV----AL  302 (470)
T ss_dssp             GGG--CCCSCEEEE--EECSBCC-------CCBCCHHHH------------HHHHHTTTTCCSCCHHHHHHHHH----HH
T ss_pred             hhc--cCCcceEEE--EccccccccccccchhHHHHHHH------------HhhhcCccccccchhhHHHHHHH----HH
Confidence            997  567778775  4332              23333            66655554444443333332222    22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceE-Eec-----CCCHHHHHHHHHcccEEEeC----C
Q 012238          370 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF-SFT-----GLNKAQSDNMTNKWHVYMTK----D  439 (467)
Q Consensus       370 ~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f-~~~-----~l~~~~~~~ll~~~gI~v~~----g  439 (467)
                      .+.+..+..+..++..++.+.|.+.|. +.|+    ++.......+ +++     +++...++++|++.||.+..    +
T Consensus       303 ~ea~~~~fk~Ya~qvv~NAk~La~~L~-~~G~----~v~~ggTdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~  377 (470)
T d1rv3a_         303 KQAMTPEFKEYQRQVVANCRALSAALV-ELGY----KIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPG  377 (470)
T ss_dssp             HHHTSHHHHHHHHHHHHHHHHHHHHHH-HTTC----EEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSS
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHH-hCCc----eeccCCCCCceEEEeecccCCcHHHHHHHHHHcCcEECCCcCCC
Confidence            222223456677888888899999998 8874    5543322223 332     56888899999999998743    2


Q ss_pred             --------C-eEEec-----cCChhhHHHHHHHHHHHHH
Q 012238          440 --------G-RISLA-----GLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       440 --------g-Ris~~-----~~~~~~i~~~~~~l~~~l~  464 (467)
                              | ||...     ++.+++++++.+.|.++++
T Consensus       378 D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~  416 (470)
T d1rv3a_         378 DKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE  416 (470)
T ss_dssp             CSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence                    3 88733     4578999999999988874

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.53  E-value=9.2e-13  Score=127.79  Aligned_cols=327  Identities=16%  Similarity=0.175  Sum_probs=195.1

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC------C---cchHHHHHHHHHHHhCCCCcccccCceee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP------I---EGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~------~---~G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      ..|+|-..++       .+++.|++++...+...+..+|+.      .   .-++.+-...|..+++..   . .+.-+-
T Consensus        28 ~~l~LiaSEN-------~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~---~-a~w~vN   96 (463)
T d2a7va1          28 RGLELIASEN-------FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLD---P-AQWGVN   96 (463)
T ss_dssp             HSEECCTTCC-------CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCC---T-TTEEEE
T ss_pred             cCeeEeccCC-------cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCC---c-hhccCC
Confidence            5688887655       238899999988886544444432      1   223334333444444432   0 122234


Q ss_pred             eecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH--------HHhhCCC--CeEEeeeecCCCCCCChhhHHHHHH
Q 012238          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN--------IFNDARV--PWSEYRYYDPKTVGLDFEGMIADIK  224 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~--------~~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~l~  224 (467)
                      ||..+|+.|...+  +.+++.|||+|+..++...++..        .+...|.  +...|.++ ++++.+|.+++++..+
T Consensus        97 Vqp~SGs~An~av--~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d-~~~~~IDyd~~~~~a~  173 (463)
T d2a7va1          97 VQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN-PKTGLIDYNQLALTAR  173 (463)
T ss_dssp             CCCSSHHHHHHHH--HHHHCCSCEECCC-------------------------------CCBC-TTTCSBCHHHHHHHHH
T ss_pred             ccccccHHHHHHH--HHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeecc-CCCCcCcHHHHHHHHh
Confidence            5678899988887  77788899999999877765532        1222332  34444443 4567899999999998


Q ss_pred             cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCc
Q 012238          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (467)
Q Consensus       225 ~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S  303 (467)
                      +  .++++|+...-.+|--.     +++++.++|.+.|.++++|.++. ++..++.-.+  ++    +.  -.++..|..
T Consensus       174 ~--~kPklIi~G~S~y~r~~-----d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~s--P~----~~--aDvvt~tTH  238 (463)
T d2a7va1         174 L--FRPRLIIAGTSAYARLI-----DYARMREVCDEVKAHLLADMAHISGLVAAKVIPS--PF----KH--ADIVTTTTH  238 (463)
T ss_dssp             H--HCCSEEEECCSSCCSCC-----CHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCC--GG----GT--CSEEEEESS
T ss_pred             h--cCCceEEeccccccccc-----CHHHHHHHhhcccceEEechhhhhHHhhhhhhcC--hh----hh--hhhhhchhh
Confidence            7  46668887776666533     35677777999999999999953 4443332111  12    22  247788999


Q ss_pred             cCcccCCCccceEEEecCCH--------------HHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhh
Q 012238          304 KNLGLYAERIGAMNVVCSSS--------------DLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL  369 (467)
Q Consensus       304 K~~~~~G~RiG~~~~v~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~  369 (467)
                      |+|  +|-|-|.|.  +...              ++.++            +....-+...+.|.....++.++    ++
T Consensus       239 KTl--rGPrgGiIl--~~~~~~~~~~~~~~~~~~~~~~~------------i~~avFPg~qggph~h~iAa~Av----a~  298 (463)
T d2a7va1         239 KTL--RGARSGLIF--YRKGVKAVDPKTGREIPYTFEDR------------INFAVFPSLQGGPHNHAIAAVAV----AL  298 (463)
T ss_dssp             GGG--CSCSCEEEE--EECSEEEEETTTEEEEECCCHHH------------HHHHHTTTTCCSCCHHHHHHHHH----HH
T ss_pred             hhh--cCCCceEEE--EcccccccccccCccchhHHHHH------------hhhhcCcccchhhhhhhHHHHHH----HH
Confidence            997  677877775  4432              33444            66555554444443333322222    22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceE-Eec-----CCCHHHHHHHHHcccEEEeCC----
Q 012238          370 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF-SFT-----GLNKAQSDNMTNKWHVYMTKD----  439 (467)
Q Consensus       370 ~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f-~~~-----~l~~~~~~~ll~~~gI~v~~g----  439 (467)
                      .+....+.++..++..++.+.|.+.|. +.|    ++++......+ +++     +++...+++.|++.||.+...    
T Consensus       299 ~ea~~~~fk~Ya~qVv~NAk~La~~L~-~~G----~~vv~ggTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~  373 (463)
T d2a7va1         299 KQACTPMFREYSLQVLKNARAMADALL-ERG----YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPG  373 (463)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHHHH-HTT----CEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTT
T ss_pred             HHhcCchHHHHHHHHHHHHHHHHHHHH-hCC----CeeecCCCCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCC
Confidence            222233456777888888999999998 888    45554333333 333     347788999999999987532    


Q ss_pred             --------C-eEEec-----cCChhhHHHHHHHHHHHHH
Q 012238          440 --------G-RISLA-----GLSLAKCEYLADAIIDSYH  464 (467)
Q Consensus       440 --------g-Ris~~-----~~~~~~i~~~~~~l~~~l~  464 (467)
                              | ||...     ++.+++++++.+.|.++++
T Consensus       374 D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~  412 (463)
T d2a7va1         374 DRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  412 (463)
T ss_dssp             CCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence                    3 88743     3577999999999988774

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.52  E-value=3.9e-12  Score=123.67  Aligned_cols=158  Identities=20%  Similarity=0.153  Sum_probs=117.4

Q ss_pred             CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCC
Q 012238          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVP  200 (467)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~  200 (467)
                      .+....|.+.++++-.+        +..++  +++|+.|+..+  ++..+.+||+|+++...|.+....+    ...|++
T Consensus        57 nPT~~~LE~~la~LE~~--------~~a~~--~~SGmaAi~~~--~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~  124 (421)
T d2ctza1          57 NPTVDVLEKRLAALEGG--------KAALA--TASGHAAQFLA--LTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIE  124 (421)
T ss_dssp             CHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCE
T ss_pred             CHHHHHHHHHHHHHhCC--------CeEEE--ecChHHHHHHH--HHhhcccccceeecCCcCCchhHHHHHHHhhcccc
Confidence            34567788888888543        24555  79999999887  6777889999999999997765544    468888


Q ss_pred             eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-C-CCCCC
Q 012238          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-G-FASGS  278 (467)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~-~~~~~  278 (467)
                      +..++..      .+.+..++.++   +++++|++-+|.|||..+.+.+   +|+++|+++|+++|+|..+. . +... 
T Consensus       125 ~~~~d~~------~~~~~~~~~~~---~~t~li~~EtpsNP~l~v~Di~---~i~~iA~~~g~~~vvDnT~a~tP~~~~-  191 (421)
T d2ctza1         125 VRFTSRE------ERPEEFLALTD---EKTRAWWVESIGNPALNIPDLE---ALAQAAREKGVALIVDNTFGMGGYLLR-  191 (421)
T ss_dssp             EEECCTT------CCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHH---HHHHHHHHHTCEEEEECGGGGGGTSCC-
T ss_pred             ceecccc------cCcchhccccC---CCceEEEEcCCCcceeEecchH---HHHHHHHhcCCceEecccccccceecc-
Confidence            7776431      12344444454   7899999999999999998866   67777999999999999975 2 2221 


Q ss_pred             CCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEE
Q 012238          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (467)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (467)
                            ++    +.+ -.|++.|.+|.++-.|--+|.+++
T Consensus       192 ------Pl----~~G-aDiVvhS~TKyl~GHsD~l~G~vv  220 (421)
T d2ctza1         192 ------PL----AWG-AALVTHSLTKWVGGHGAVIAGAIV  220 (421)
T ss_dssp             ------GG----GGT-CSEEEEETTTTTTCSSCCCCEEEE
T ss_pred             ------cc----ccC-CcEEEEechhhccCCCCeEEEEEE
Confidence                  11    222 358899999999888888888763

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.6e-12  Score=125.88  Aligned_cols=329  Identities=11%  Similarity=0.074  Sum_probs=192.0

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC-CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~-~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +.+.|||..|.-...-|.  -.|.|.+|+.+.++.... ..+....-..++.+.++++. .       .+++.+  +++|
T Consensus        40 G~~ylD~~~g~~~~~lGh--~~p~i~~Av~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~v~~--~~sG  107 (404)
T d2byla1          40 GRKYFDFLSSISAVNQGH--CHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF-N-------YHKVLP--MNTG  107 (404)
T ss_dssp             CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCCCCCTTEEESSHHHHHHHHHHHH-T-------CSEEEE--ESSH
T ss_pred             CCEEEEecCCHHHHhhcC--CCHHHHHHHHHHHhhCCCcccccccchHHHHHHhhhhcc-c-------cccccc--ccCc
Confidence            458899988854222232  368899999888764321 11112222344555555553 2       357888  9999


Q ss_pred             hhHHHHHHHHHHHhC--------CCCEEEEcCCCCcchHH-HHhhC-------CC-----CeEEeeeecCCCCCCChhhH
Q 012238          161 TGSLRLAAALIERYF--------PGAKVLISSPTWGNHKN-IFNDA-------RV-----PWSEYRYYDPKTVGLDFEGM  219 (467)
Q Consensus       161 t~al~l~~~~l~~~~--------~gd~Vlv~~P~y~~~~~-~~~~~-------G~-----~~~~v~~~~~~~~~~d~~~l  219 (467)
                      ++|...+.++.....        ...+++...-+|..... .+...       +.     .+..+|.       .|++.+
T Consensus       108 seA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-------~d~~~l  180 (404)
T d2byla1         108 VEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPAL  180 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT-------TCHHHH
T ss_pred             cccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc-------cCHHHH
Confidence            999999865543221        22467777766653222 11111       11     1222222       578899


Q ss_pred             HHHHHcCCCCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238          220 IADIKAAPGGSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (467)
Q Consensus       220 ~~~l~~~~~~~~~i~i~~p~NPTG-~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (467)
                      ++.+..  ++...+++-.-....| ..++++-+++|.++|++||+++|+||+..+|.-.+   ..+.. ....-.++++ 
T Consensus       181 ~~~l~~--~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G---~~~a~-~~~gv~PDi~-  253 (404)
T d2byla1         181 ERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG---RWLAV-DYENVRPDIV-  253 (404)
T ss_dssp             HHHHTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSGG-GGGTCCCSEE-
T ss_pred             HHhcCC--CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccccccccc---ccchh-hhcCCCCCEE-
Confidence            998874  4445555544444456 45678889999999999999999999988873221   11111 1112223433 


Q ss_pred             EecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238          299 AQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  377 (467)
Q Consensus       299 ~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l  377 (467)
                        .++|.++ .| +.+|.++   ..+++.+.            +.......+.+.++++..++.+.|+.  +    ++  
T Consensus       254 --~~gK~l~-gG~~p~~av~---~~~~i~~~------------~~~~~~~~T~~gnpl~~aaa~a~L~~--i----~~--  307 (404)
T d2byla1         254 --LLGKALS-GGLYPVSAVL---CDDDIMLT------------IKPGEHFSTYGGNPLGCRVAIAALEV--L----EE--  307 (404)
T ss_dssp             --EECGGGG-TTSSCCEEEE---ECHHHHTT------------SCTTSSCCSSTTCHHHHHHHHHHHHH--H----HH--
T ss_pred             --EECchhh-CCCccceeee---echhhhhc------------cCCCCCCcCCCcCHHHHHHHHHHHHH--H----Hh--
Confidence              6789998 55 7888885   67777665            43332223445566666666665531  1    11  


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEe--cC---CC-HHHHHHHHHcccEEEeCC-C-eEEec---c
Q 012238          378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF--TG---LN-KAQSDNMTNKWHVYMTKD-G-RISLA---G  446 (467)
Q Consensus       378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~--~~---l~-~~~~~~ll~~~gI~v~~g-g-Ris~~---~  446 (467)
                      +...++.++..+++.+.|. ++.-+. +..+...|-++.+  ..   .. .++++++++ +||++.+. + +|.+.   .
T Consensus       308 ~~l~~~~~~~g~~l~~~l~-~l~~~~-i~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~-~Gvl~~~~~~~~i~l~PpL~  384 (404)
T d2byla1         308 ENLAENADKLGIILRNELM-KLPSDV-VTAVRGKGLLNAIVIKETKDWDAWKVCLRLRD-NGLLAKPTHGDIIRFAPPLV  384 (404)
T ss_dssp             TTHHHHHHHHHHHHHHHHH-TSCTTT-EEEEEEETTEEEEEECCCSSCCHHHHHHHHHH-TTEECEEEETTEEEECCCTT
T ss_pred             cCchhhhhHhhHHHHHHHH-hhcccc-ceeeeecccEEEEEEecCCchhHHHHHHHHHh-CCeEEecCCCCEEEEECCcC
Confidence            2344555666677777777 653211 1112223333221  11   12 345667776 59999874 3 44443   2


Q ss_pred             CChhhHHHHHHHHHHHHHh
Q 012238          447 LSLAKCEYLADAIIDSYHN  465 (467)
Q Consensus       447 ~~~~~i~~~~~~l~~~l~~  465 (467)
                      ++++++++++++|++++++
T Consensus       385 it~~~id~~~~~l~~al~~  403 (404)
T d2byla1         385 IKEDELRESIEIINKTILS  403 (404)
T ss_dssp             CCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHc
Confidence            4889999999999999976

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.52  E-value=3.2e-12  Score=124.25  Aligned_cols=189  Identities=14%  Similarity=-0.046  Sum_probs=122.0

Q ss_pred             HHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-hCCCCEEEEcCC
Q 012238          107 KKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKVLISSP  185 (467)
Q Consensus       107 ~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~~~gd~Vlv~~P  185 (467)
                      ++++.+.++.++...++|  -..+|.+.+++++..+        .++.  +++||.|+.++  +.+. +.+||+|++|+-
T Consensus         4 ~~~~~~~l~~~~~~~~G~--~~~~fE~~~~~~~~~~--------~~~~--~~SgT~Al~la--l~~l~~~~gdeVi~p~~   69 (374)
T d1o69a_           4 LKYIEEVFKSNYIAPLGE--FVNRFEQSVKDYSKSE--------NALA--LNSATAALHLA--LRVAGVKQDDIVLASSF   69 (374)
T ss_dssp             HHHHHHHHHHTTTSCTTH--HHHHHHHHHHHHHCCS--------EEEE--ESCHHHHHHHH--HHHTTCCTTCEEEEESS
T ss_pred             HHHHHHHHhcCCcCCCCH--HHHHHHHHHHHHHCcC--------eEEE--eCCHHHHHHHH--HHHcCCCCcCEEEeCCc
Confidence            355566665554223333  3789999999997543        5666  89999999998  3333 558999999999


Q ss_pred             CCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012238          186 TWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP  265 (467)
Q Consensus       186 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~l  265 (467)
                      +|....+.+...|++++.++++ +.....+.+..+.. .....+++++++.   +.-|...+   +++|.++|+++|++|
T Consensus        70 t~~a~~~~~~~~g~~pv~~Di~-~~~~~~~~~~~~~~-~~~~~~~~aii~~---~~~G~~~d---~~~i~~~~~~~~i~v  141 (374)
T d1o69a_          70 TFIASVAPICYLKAKPVFIDCD-ETYNIDVDLLKLAI-KECEKKPKALILT---HLYGNAAK---MDEIVEICKENDIVL  141 (374)
T ss_dssp             SCGGGTHHHHHTTCEEEEECBC-TTSSBCHHHHHHHH-HHCSSCCCEEEEE---CGGGCCCC---HHHHHHHHHHTTCEE
T ss_pred             chHhhHHHHhhccceeEecccc-cccccccccccccc-hhccccccccccc---ccccchhh---hHHHHHHhhccCcch
Confidence            9999999999999999999985 33333444433322 2222455566654   33466555   456677799999999


Q ss_pred             EEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhh
Q 012238          266 FFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       266 i~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                      |+|.+.. +...   .....   .-..++-.++....+|.++. |. -|.++  +.++++.+.
T Consensus       142 IED~a~a-~g~~---~~~~~---~G~~gd~~~fSf~~~K~l~t-ge-GG~i~--tnn~~~~~~  193 (374)
T d1o69a_         142 IEDAAEA-LGSF---YKNKA---LGTFGEFGVYSYNGNKIITT-SG-GGMLI--GKNKEKIEK  193 (374)
T ss_dssp             EEECTTC-TTCE---ETTEE---TTSSSSEEEEECCTTSSSCC-SS-CEEEE--ESCHHHHHH
T ss_pred             hhhhhhh-hcce---ECCee---cCCCCceEEEeccCcccccc-cc-ceeeh--hhhHHHHHh
Confidence            9999943 3211   01110   11123334444445688874 43 35553  788888877

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=3.3e-12  Score=124.42  Aligned_cols=329  Identities=13%  Similarity=0.028  Sum_probs=190.7

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (467)
                      +.+.||+..|.--..-|.  -.|.|.+++.+.++.....   +..-..+.+..+++.+......  .-+++.+  +++|+
T Consensus        36 G~~ylD~~~g~~~~~lGh--~hp~v~~a~~~~~~~~~~~---~~~~~~~~~~~la~~l~~~~~~--~~~~v~f--~~sGs  106 (387)
T d1vefa1          36 GNEYIDCVGGYGVANLGH--GNPEVVEAVKRQAETLMAM---PQTLPTPMRGEFYRTLTAILPP--ELNRVFP--VNSGT  106 (387)
T ss_dssp             SCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHHHCCCC---CTTSCCHHHHHHHHHHHHTSCT--TEEEEEE--ESSHH
T ss_pred             CCEEEEcchhHHhhhhcC--CcHHHHHHHHHHHHhhccc---ccccCCchHHHHHHHhhhhccc--cceeecc--ccCch
Confidence            457899977644222232  3688888888887653211   1111123444555554433211  1246888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCC------------CeEEeeeecCCCCCCChhhHHHHHHcCCC
Q 012238          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARV------------PWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (467)
Q Consensus       162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~------------~~~~v~~~~~~~~~~d~~~l~~~l~~~~~  228 (467)
                      +|.+.+.++........+|+....+|........ ..|.            .+..+|.       .|.+.+++.+.   +
T Consensus       107 eA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~~~---~  176 (387)
T d1vefa1         107 EANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------NDVEALKRAVD---E  176 (387)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------TCHHHHHHHCC---T
T ss_pred             HHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-------CCHHHHHHhcC---C
Confidence            9999987665555556799999988865432222 2221            1222322       47888888876   4


Q ss_pred             CcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238          229 GSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (467)
Q Consensus       229 ~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (467)
                      ....+++-.-+.-.|. .++++-+++|.++|++||+++|.||+..+|.-.+   ..+.. ...+-.++++   .++|.++
T Consensus       177 ~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G---~~~~~-~~~~v~PDi~---~~gK~l~  249 (387)
T d1vefa1         177 ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG---KRFAF-EHFGIVPDIL---TLAKALG  249 (387)
T ss_dssp             TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSTH-HHHTCCCSEE---EECGGGG
T ss_pred             CeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccC---CCccc-ccCCcCCcee---eecccCC
Confidence            5555555443444565 4678889999999999999999999988883221   11111 2223334444   3579888


Q ss_pred             cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012238          308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  387 (467)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~  387 (467)
                       .|.-++.+.   ..++..+.            +.......+.+.++++..++...|+-  +    +  -....+++++.
T Consensus       250 -gG~~~~~~~---~~~~~~~~------------~~~~~~g~T~~gnPla~aaa~a~L~~--l----~--~~~~~~~v~~~  305 (387)
T d1vefa1         250 -GGVPLGVAV---MREEVARS------------MPKGGHGTTFGGNPLAMAAGVAAIRY--L----E--RTRLWERAAEL  305 (387)
T ss_dssp             -TTSSCEEEE---EEHHHHHT------------SCTTSSCCSSTTCHHHHHHHHHHHHH--H----H--HHTTHHHHHHH
T ss_pred             -CCccccccc---cceeeeec------------cccCCccccCCCCcchhhhcccchhh--c----c--cccccchHhhh
Confidence             777777774   55655554            33222223344566666666555431  1    1  12344556666


Q ss_pred             HHHHHHHhhhccCCCCCcccccCCcceEEecCC---CHHHHHHHHHcccEEEeCCC----eEEec-cCChhhHHHHHHHH
Q 012238          388 RQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAI  459 (467)
Q Consensus       388 r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~~~i~~~~~~l  459 (467)
                      -+++.+.|+ ++..+. +..+...|.++ -+.+   ....+.+++.++|+++.+.|    |++.. .+++++++.++++|
T Consensus       306 g~~l~~~L~-~l~~~~-v~~vrg~Gl~~-~ie~~~~~~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~it~~~ld~~~~~i  382 (387)
T d1vefa1         306 GPWFMEKLR-AIPSPK-IREVRGMGLMV-GLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAV  382 (387)
T ss_dssp             HHHHHHHHH-TSCCTT-EEEEEEETTEE-EEEESSCSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred             hHHHHHHHH-hcCCCc-eEEEeecceEE-EEEEeCCchHHHHHHHHHCCCeEEecCCCEEEEECCccCCHHHHHHHHHHH
Confidence            677777887 654321 11122223222 2222   33444454445588766654    55532 24889999999999


Q ss_pred             HHHH
Q 012238          460 IDSY  463 (467)
Q Consensus       460 ~~~l  463 (467)
                      ++++
T Consensus       383 ~~aL  386 (387)
T d1vefa1         383 RAVL  386 (387)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9986

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=2.6e-12  Score=124.20  Aligned_cols=211  Identities=15%  Similarity=0.118  Sum_probs=141.2

Q ss_pred             CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCCC
Q 012238          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVP  200 (467)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~  200 (467)
                      .+....|.++++++-.+        +..++  +++|+.|+..+   +..+.+||.|++....|......++    ..|.+
T Consensus        54 nPT~~~lE~~la~LE~~--------~~a~~--~sSGmaAi~~~---l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~  120 (393)
T d1n8pa_          54 NPNRENLERAVAALENA--------QYGLA--FSSGSATTATI---LQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE  120 (393)
T ss_dssp             CHHHHHHHHHHHHHTTC--------SEEEE--ESCHHHHHHHH---HHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSC
T ss_pred             ChHHHHHHHHHHHHhCC--------ceEEE--ecCchhHHHhh---hhcccCCCeeeeeeeecccchhhhhhhhhcccce
Confidence            34566788888888432        24444  68888888654   5677899999999999987665554    56666


Q ss_pred             eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH----hcCCeeEEeccCCCCCC
Q 012238          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ----EKNHIPFFDVAYQGFAS  276 (467)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~----~~~~~li~Deay~~~~~  276 (467)
                      +..++        .+.+++++.++   +++++|++-+|.||+..+.+.+.   |+++++    ++|+++|+|..|.....
T Consensus       121 ~~~~~--------~~~~~~~~~i~---~~t~lv~~EspsNP~l~v~Di~~---ia~~a~~~~~~~g~~lvVDnT~atP~~  186 (393)
T d1n8pa_         121 TSFTN--------DLLNDLPQLIK---ENTKLVWIETPTNPTLKVTDIQK---VADLIKKHAAGQDVILVVDNTFLSPYI  186 (393)
T ss_dssp             CEEES--------SHHHHHHHHSC---SSEEEEEECSSCTTTCCCCCHHH---HHHHHHHHTTTTTCEEEEECTTTHHHH
T ss_pred             eEEee--------cchHHHHHHhh---hhcceeEecCcchhhhhccchhh---hhhhhhhhcccCCceEEEecCccCccc
Confidence            55542        24567888776   78999999999999999998774   444465    68999999999753322


Q ss_pred             CCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHH
Q 012238          277 GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHG  356 (467)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  356 (467)
                      -.      +    .+.+ -.|++.|.+|.++-.|-=+|.++ +..++++.+.            ++.........+++..
T Consensus       187 ~~------P----l~~G-ADiVvhS~TKyi~GhsDv~~G~v-~~~~~~~~~~------------l~~~~~~~G~~~~p~~  242 (393)
T d1n8pa_         187 SN------P----LNFG-ADIVVHSATKYINGHSDVVLGVL-ATNNKPLYER------------LQFLQNAIGAIPSPFD  242 (393)
T ss_dssp             CC------G----GGGT-CSEEEEETTTTTTCSSCCCCEEE-EESCHHHHHH------------HHHHHHHHCCCCCHHH
T ss_pred             CC------c----hhhC-CCEEEEccccccCCCCcccccee-eecchhHHHH------------HHHHHhhcCCCCChHH
Confidence            10      1    1222 35889999999976665555543 2567777666            4444444444566666


Q ss_pred             HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238          357 ARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  396 (467)
Q Consensus       357 ~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~  396 (467)
                      ...+..-|+.          +..+.++..++...+.+.|+
T Consensus       243 a~ll~rgl~T----------l~lR~~~~~~nA~~lA~~L~  272 (393)
T d1n8pa_         243 AWLTHRGLKT----------LHLRVRQAALSANKIAEFLA  272 (393)
T ss_dssp             HHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCcc----------hhhHHHHHHHHHHHHHHHHH
Confidence            6666555544          33444555556666777775

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.51  E-value=2.5e-12  Score=124.90  Aligned_cols=192  Identities=13%  Similarity=0.013  Sum_probs=130.9

Q ss_pred             CCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-hCCC-
Q 012238          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPG-  177 (467)
Q Consensus       100 p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~~~g-  177 (467)
                      |...+.-++++.+.++.+.   |....-..+|.+.+++++..+        ++++  +++||.|+.++  +.+. ..+| 
T Consensus         8 p~~~~~~~~~v~~~l~~~~---~~~G~~v~~fE~~~~~~~g~k--------~ai~--~~Sgt~Al~~a--l~al~~~~~~   72 (371)
T d2fnua1           8 PCLDKEDKKAVLEVLNSKQ---LTQGKRSLLFEEALCEFLGVK--------HALV--FNSATSALLTL--YRNFSEFSAD   72 (371)
T ss_dssp             CCCCHHHHHHHHHHHTSSC---CSSSHHHHHHHHHHHHHHTCS--------EEEE--ESCHHHHHHHH--HHHSSCCCTT
T ss_pred             CCCCHHHHHHHHHHHcCCC---ccCCHHHHHHHHHHHHHHCcC--------eEEE--EecHHHHHHHH--HHHhcccCCC
Confidence            3345666777888876543   333345889999999997543        5666  89999999998  3322 2244 


Q ss_pred             -CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012238          178 -AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (467)
Q Consensus       178 -d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~  256 (467)
                       |+|++|.-+|......+...|++++.++++ + +..++.+.+++.+.   +++++++..+   .-|...+.+   +|.+
T Consensus        73 ~~eVi~p~~t~~a~~~ai~~~G~~pv~vDi~-~-~~~~~~~~~~~~~~---~~t~avi~vh---~~G~~~~~~---~i~~  141 (371)
T d2fnua1          73 RNEIITTPISFVATANMLLESGYTPVFAGIK-N-DGNIDELALEKLIN---ERTKAIVSVD---YAGKSVEVE---SVQK  141 (371)
T ss_dssp             SCEEEECSSSCTHHHHHHHHTTCEEEECCBC-T-TSSBCGGGSGGGCC---TTEEEEEEEC---GGGCCCCHH---HHHH
T ss_pred             CCeeecccccccccceeeeccCccccccccc-c-cccccchhhhhhcc---chhhcccccc---ccccccccc---cccc
Confidence             489999999999999999999999999984 3 33567777776665   6777777653   447766655   6666


Q ss_pred             HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhh
Q 012238          257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (467)
Q Consensus       257 ~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~  328 (467)
                      +|+++|+++|+|.+....+.-.   ...    ....++-.++....+|.+. .|. -|.++  +.++++.+.
T Consensus       142 ~~~~~~i~lIEDaaqa~Ga~~~---~~~----~G~~g~~~~~Sf~~~K~l~-~g~-GG~i~--t~~~~~~~~  202 (371)
T d2fnua1         142 LCKKHSLSFLSDSSHALGSEYQ---NKK----VGGFALASVFSFHAIKPIT-TAE-GGAVV--TNDSELHEK  202 (371)
T ss_dssp             HHHHHTCEEEEECTTCTTCEET---TEE----TTSSSSEEEEECCTTSSSC-CSS-CEEEE--ESCHHHHHH
T ss_pred             cccccchhhccchhhccCceec---ccc----CCccccccccccccccccc-ccc-ceEEE--eechhhhhh
Confidence            7999999999999944322110   000    0112334455555589987 443 45553  788888887

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=2e-12  Score=127.77  Aligned_cols=344  Identities=9%  Similarity=0.034  Sum_probs=186.5

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC--CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.||+..|.--..-|  +-.|.|.+++.+.+.........  ......++-+.+.+.+-...     .+.+.+  +++
T Consensus        39 G~~ylD~~~g~~~~~lG--h~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~-----~~~v~f--~~s  109 (425)
T d1sffa_          39 GREYLDFAGGIAVLNTG--HLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDF-----AKKTLL--VTT  109 (425)
T ss_dssp             CCEEEESSHHHHTCTTC--BTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSS-----CEEEEE--ESS
T ss_pred             CCEEEEcCcCHHhhccc--CCcHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhhhhhcc-----cceeee--ecc
Confidence            45889999885422223  23688999998887542211111  11222334444444432111     246777  899


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-hhCCCC-------------eEEeeee--cCCCCCCCh-hhHHHH
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDARVP-------------WSEYRYY--DPKTVGLDF-EGMIAD  222 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~-~~~G~~-------------~~~v~~~--~~~~~~~d~-~~l~~~  222 (467)
                      |++|.+.+.++......-.+|+...-+|....... ...|..             ....+..  ......... +..++.
T Consensus       110 GseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (425)
T d1sffa_         110 GSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRI  189 (425)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHH
T ss_pred             ccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHH
Confidence            99999998766555555578999888887654322 222211             1111110  000000000 111111


Q ss_pred             H--HcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCC-CCCCCCChhHHHHHHhcCCeEEE
Q 012238          223 I--KAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLV  298 (467)
Q Consensus       223 l--~~~~~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~  298 (467)
                      +  .........+++-.-+...|. .++++-++.|.++|++||+++|+||+..++. .+.    .+.. ....-.++++ 
T Consensus       190 ~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~----~~a~-~~~gv~PDi~-  263 (425)
T d1sffa_         190 FKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT----LFAM-EQMGVAPDLT-  263 (425)
T ss_dssp             HHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS----SSGG-GGTTSCCSEE-
T ss_pred             HHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcch----hhHH-HhcCCCccce-
Confidence            1  111234445555444434554 5678999999999999999999999988853 331    1111 1112233433 


Q ss_pred             EecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME  378 (467)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~  378 (467)
                        .++|.++ .|+.+|.++   ..+++.+.            +.......+.+.+.++..++...|+-  +.+  .+.++
T Consensus       264 --~~gK~l~-gG~P~~av~---~~~~i~~~------------~~~~~~~~T~~gnpl~~aaa~a~L~~--i~~--~~~~~  321 (425)
T d1sffa_         264 --TFAKSIA-GGFPLAGVT---GRAEVMDA------------VAPGGLGGTYAGNPIACVAALEVLKV--FEQ--ENLLQ  321 (425)
T ss_dssp             --EECGGGG-TSSCCEEEE---EEHHHHTT------------SCTTSBCCSSSSCHHHHHHHHHHHHH--HHH--TTHHH
T ss_pred             --ecccccC-CCcceEEEE---EcHHHHHh------------hCCCCCCCCCCcCHHHHHHHHHHHHH--HHH--hhhhh
Confidence              3789998 688899985   77777765            43333333445556666666665531  111  01122


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEe--cC-----C-C----HHHHHHHHHcccEEEeCCC------
Q 012238          379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF--TG-----L-N----KAQSDNMTNKWHVYMTKDG------  440 (467)
Q Consensus       379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~--~~-----l-~----~~~~~~ll~~~gI~v~~gg------  440 (467)
                      ...+.-...++.+.+.++ +.+.   ...+...|.++.+  ..     . +    ..+.+++++ +||++.++|      
T Consensus       322 ~~~~~g~~l~~~l~~~~~-~~~~---v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~-~Gvl~~~~g~~~n~i  396 (425)
T d1sffa_         322 KANDLGQKLKDGLLAIAE-KHPE---IGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPYYNVL  396 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TCTT---EEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTTSCEE
T ss_pred             hhhhhhhhhhhhhhhhHh-hCCc---eEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHH-CCCEEeccCCCCCEE
Confidence            222222233344444444 4442   2223334444321  11     0 2    234556666 599988764      


Q ss_pred             eEEec-cCChhhHHHHHHHHHHHHHhcC
Q 012238          441 RISLA-GLSLAKCEYLADAIIDSYHNVS  467 (467)
Q Consensus       441 Ris~~-~~~~~~i~~~~~~l~~~l~~~~  467 (467)
                      |++.. .++++++++++++|++++++++
T Consensus       397 ~~~PpL~it~~eid~~l~~l~~al~eik  424 (425)
T d1sffa_         397 RILVPLTIEDAQIRQGLEIISQCFDEAK  424 (425)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            44432 2488999999999999998864

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=8.3e-13  Score=132.46  Aligned_cols=309  Identities=10%  Similarity=0.000  Sum_probs=178.2

Q ss_pred             CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCC---------EEEEcCCCCcch
Q 012238          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA---------KVLISSPTWGNH  190 (467)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd---------~Vlv~~P~y~~~  190 (467)
                      ..|....+..+|++++++++..        +.+++  +++|+.|..++.  ...+.+||         .+......|...
T Consensus        68 ~~Y~~~~~~~~le~~~a~l~G~--------~~~~~--~~sGt~A~~~a~--~~~~~~g~~~~~~~~~~~i~~~~~~~~~~  135 (467)
T d2v1pa1          68 EAFSGSRSYYALAESVKNIFGY--------QYTIP--THQGRGAEQIYI--PVLIKKREQEKGLDRSKMVAFSNYFFDTT  135 (467)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTCC--------SEEEE--ECSSTTTHHHHH--HHHHHHHHHHHCCCTTTCEEEESSCCHHH
T ss_pred             hhhcCCchHHHHHHHHHHHHCC--------CEEEE--CCCCHHHHHHHH--HHHhhccceEecCCCCcEEEEeccccccc
Confidence            5688888899999999999643        35666  899999999973  33333333         355555666666


Q ss_pred             HHHHhhCCCCeEEeeeecC--------CCCCCChhhHHHHHHcCC-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHh
Q 012238          191 KNIFNDARVPWSEYRYYDP--------KTVGLDFEGMIADIKAAP-GGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQE  260 (467)
Q Consensus       191 ~~~~~~~G~~~~~v~~~~~--------~~~~~d~~~l~~~l~~~~-~~~~~i~i~~p~NPT-G~~~~~~~l~~l~~~~~~  260 (467)
                      .......|..++.++....        ....+|++.+++.+++.. ..+.++++.+.+|.. |.+++.+++++|.++|++
T Consensus       136 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~  215 (467)
T d2v1pa1         136 QGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK  215 (467)
T ss_dssp             HHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHH
Confidence            7777889999888766321        134689999999997642 344566666666654 778899999999999999


Q ss_pred             cCCeeEEeccCCC----------CCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhh
Q 012238          261 KNHIPFFDVAYQG----------FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCC  330 (467)
Q Consensus       261 ~~~~li~Deay~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~  330 (467)
                      ||+++++|++...          ..+..  .....+..-. ...-.++..|.+|.++.+  +.|++.  +.++.+...  
T Consensus       216 ~g~~l~~D~a~~~~~~~~~~~~~~~~~~--~~~~~i~~~~-~~~~d~~s~s~~K~~~~~--~gg~i~--~~~~~~~~~--  286 (467)
T d2v1pa1         216 YDIPVVMDSARFAENAYFIKQREAEYKD--WTIEQITRET-YKYADMLAMSAKKDAMVP--MGGLLC--MKDDSFFDV--  286 (467)
T ss_dssp             TTCCEEEECTTHHHHHHHHHHHCGGGTT--SCHHHHHHHH-GGGCSEEEEESSSTTCCS--SCEEEE--ECSGGGHHH--
T ss_pred             cCCEEEEechhhhccccccccccccccC--Ccccccchhh-cccCCEEEecCCCCCCCC--CceeEE--ecchhhhhH--
Confidence            9999999999421          11110  1111111111 112346677888987643  345553  444443332  


Q ss_pred             hhhHHHHHHHHHhhcc-CccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccc
Q 012238          331 EVAVIQVKSQLKRLAR-PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  409 (467)
Q Consensus       331 ~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~  409 (467)
                         .-..+........ ....+.......+....+... .       ..+..++..++.+++.+.|+ +.+.    .+.+
T Consensus       287 ---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~-------~~~~~~~~~~~~~~l~~~L~-~~~~----~v~~  350 (467)
T d2v1pa1         287 ---YTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDG-M-------NLDWLAYRIAQVQYLVDGLE-EIGV----VCQQ  350 (467)
T ss_dssp             ---HHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHT-T-------CHHHHHHHHHHHHHHHHHHH-HTTC----CEEE
T ss_pred             ---HHhhcccccccccCcchhhhHHHHHHHHHHHhHHh-h-------hHHHHHHHHHHHHHHHHHHH-hcCC----cccC
Confidence               0001111111111 112233333322222222110 0       11233334456677778887 6653    2222


Q ss_pred             CCc-ceEEe-----cCC------CHHHHHHHHHcccEEEeCC-----------------C----eEEec--cCChhhHHH
Q 012238          410 RQI-GMFSF-----TGL------NKAQSDNMTNKWHVYMTKD-----------------G----RISLA--GLSLAKCEY  454 (467)
Q Consensus       410 ~~~-g~f~~-----~~l------~~~~~~~ll~~~gI~v~~g-----------------g----Ris~~--~~~~~~i~~  454 (467)
                      +.+ +.++.     ...      .......++.+.||.....                 .    |+++.  ..+++++++
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~  430 (467)
T d2v1pa1         351 AGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDF  430 (467)
T ss_dssp             ECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHH
T ss_pred             CCccceeecchhhcCCcchhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHH
Confidence            222 11211     111      1234556777788864321                 1    88764  347899999


Q ss_pred             HHHHHHHHHHh
Q 012238          455 LADAIIDSYHN  465 (467)
Q Consensus       455 ~~~~l~~~l~~  465 (467)
                      ++++|++++++
T Consensus       431 vv~~l~~v~~~  441 (467)
T d2v1pa1         431 IIEAFKHVKEN  441 (467)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=4.1e-11  Score=118.11  Aligned_cols=343  Identities=10%  Similarity=0.008  Sum_probs=189.8

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC--CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.||+..|.--..-|  +-.|.|.+++.+.++......+.  +.....++-+.+.+.....      -+.+.+  +++
T Consensus        42 G~~ylD~~~g~~~~~lG--h~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~~~v~f--~~s  111 (429)
T d1s0aa_          42 GRRLVDGMSSWWAAIHG--YNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQP------LECVFL--ADS  111 (429)
T ss_dssp             SCEEEESSTTTTTCTTC--BSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTT------CCEEEE--ESS
T ss_pred             CCEEEECcccHHHHhhc--CCcHHHHHHHHHHHHhcCCcccCCccchHHHHHHHHHHhhhccC------cceeee--ccc
Confidence            45789998875422223  33788999998877542211111  1222233434444442111      357878  999


Q ss_pred             chhHHHHHHHHHHHh-----CCCCEEEEcCCCCcchHH-HHhhCC-------------CCeEEeeeec-CCCCC---CCh
Q 012238          160 GTGSLRLAAALIERY-----FPGAKVLISSPTWGNHKN-IFNDAR-------------VPWSEYRYYD-PKTVG---LDF  216 (467)
Q Consensus       160 gt~al~l~~~~l~~~-----~~gd~Vlv~~P~y~~~~~-~~~~~G-------------~~~~~v~~~~-~~~~~---~d~  216 (467)
                      |++|.+.+.++....     .+..+|+...-+|..... .+...|             ......|... .....   .++
T Consensus       112 GseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (429)
T d1s0aa_         112 GSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDM  191 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGG
T ss_pred             cccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhh
Confidence            999999885554433     134589988888864432 222111             1112222111 11112   345


Q ss_pred             hhHHHHHHcCCCCcEEEEeCCC-CCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012238          217 EGMIADIKAAPGGSFILLHGCA-HNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (467)
Q Consensus       217 ~~l~~~l~~~~~~~~~i~i~~p-~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~  294 (467)
                      +.+++.+...++....+++... ++-.|. .++++-+++|.++|++||+++|.||+..+|.-.+   ..+.. ....-.+
T Consensus       192 ~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG---~~~~~-~~~~v~P  267 (429)
T d1s0aa_         192 VGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG---KLFAC-EHAEIAP  267 (429)
T ss_dssp             HHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSGG-GGGTCCC
T ss_pred             hhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccc---ccccc-ccceecc
Confidence            5555555544455555555533 355555 4688999999999999999999999998884221   11111 1112233


Q ss_pred             eEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc-----cCccCCCchHHHHHHHHHhCChhh
Q 012238          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA-----RPMYSNPPVHGARIVANVVGNPAL  369 (467)
Q Consensus       295 ~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~L~~~~~  369 (467)
                      ++++   ++|.++-.+..+|.++   ..+++.+.            +....     ...+.+.+.++..++.+.|+.  +
T Consensus       268 Di~~---~gK~l~gG~~p~~av~---~~~~i~~~------------~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~--i  327 (429)
T d1s0aa_         268 DILC---LGKALTGGTMTLSATL---TTREVAET------------ISNGEAGCFMHGPTFMGNPLACAAANASLAI--L  327 (429)
T ss_dssp             SEEE---ECGGGGTSSSCCEEEE---ECHHHHHH------------HHTSTTSSCSCCCTTTTCHHHHHHHHHHHHH--H
T ss_pred             cccc---cccccccccccccchh---hHHHHHhc------------cCCCCCcceeecCCCCCCcccchhhhccccc--c
Confidence            4443   4688874447888884   77777665            43211     112334555666666555531  1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEe-c--CCCHHH-HHHHHHcccEEEeCCC---eE
Q 012238          370 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF-T--GLNKAQ-SDNMTNKWHVYMTKDG---RI  442 (467)
Q Consensus       370 ~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~-~--~l~~~~-~~~ll~~~gI~v~~gg---Ri  442 (467)
                          +  -++..++.++.-+++.+.|+ ++..+..+.-+...|.++.+ +  ..+.+. ...+++ +|+++.+.|   |+
T Consensus       328 ----~--~~~~~~~~~~~g~~l~~~L~-~l~~~~~v~~vrg~Gl~~~~e~~~~~~~~~~~~~~~~-~Gl~~~~~g~~i~~  399 (429)
T d1s0aa_         328 ----E--SGDWQQQVADIEVQLREQLA-PARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVE-QGVWIRPFGKLIYL  399 (429)
T ss_dssp             ----H--TCHHHHHHHHHHHHHHHHHG-GGGGCTTEEEEEEETTEEEEEESSCBCHHHHHHHHHH-TTEECCCBTTEEEE
T ss_pred             ----c--cccccchhhHHHHHHHHHHH-HhccCCceEEEeecccEEEEEecCcccHHHHHHHHHH-CCcEEEecCCEEEE
Confidence                0  02344555556666777776 54211112222233333322 1  123334 455555 699999988   54


Q ss_pred             Eec-cCChhhHHHHHHHHHHHHHhc
Q 012238          443 SLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       443 s~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +.. .++++++++++++|.++++++
T Consensus       400 ~Ppl~it~~eid~~~~~l~~al~e~  424 (429)
T d1s0aa_         400 MPPYIILPQQLQRLTAAVNRAVQDE  424 (429)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred             eCCcCCCHHHHHHHHHHHHHHHHhh
Confidence            422 248899999999999999864

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.44  E-value=2.5e-12  Score=128.69  Aligned_cols=178  Identities=14%  Similarity=-0.018  Sum_probs=101.1

Q ss_pred             CCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc-hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CCC
Q 012238          122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG-TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-ARV  199 (467)
Q Consensus       122 Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg-t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~  199 (467)
                      +.|..-+.++++.+|++++.        ++.++  +.+| ++++..+  +.+.+.|||+|+++.-++....+.... .+.
T Consensus        62 ~~~~~~i~eae~~~A~~~ga--------~~a~f--~~~Gtt~~n~a~--i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~  129 (462)
T d1c4ka2          62 LIHEGPAVAAEKHAARVYNA--------DKTYF--VLGGSSNANNTV--TSALVSNGDLVLFDRNNHKSVYNSALAMAGG  129 (462)
T ss_dssp             TTTBTHHHHHHHHHHHHTTC--------SEEEE--ESSHHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHTTTTCC
T ss_pred             cCCCHHHHHHHHHHHHHhCC--------CeEEE--ECCchHHHHHHH--HHHhcCCCCeEEecccchHHHHHHHHHHhcC
Confidence            44555578999999999643        34555  4555 5555444  455678999999999999877664443 344


Q ss_pred             CeEEeeeecCCCC--------CCChhhHHHHHHc------CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012238          200 PWSEYRYYDPKTV--------GLDFEGMIADIKA------APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP  265 (467)
Q Consensus       200 ~~~~v~~~~~~~~--------~~d~~~l~~~l~~------~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~l  265 (467)
                      .++..+..-+..+        .++.+.+++.+..      ...++..+++...+|-.|.+.+.+   +|+++|+++|+++
T Consensus       130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~---~I~~ia~~~g~~l  206 (462)
T d1c4ka2         130 RPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAH---EVVKRIGHLCDYI  206 (462)
T ss_dssp             EEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHH---HHHHHHGGGBSEE
T ss_pred             CceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHH---HHHHHHHHcCCEE
Confidence            4444332211111        1233333222211      112333333344456789888765   6777799999999


Q ss_pred             EEeccCCCCCCCCCCCChhHHHHHH----hcCCeEEEEecCccCcccCCCccceEE
Q 012238          266 FFDVAYQGFASGSLDNDASSVRLFA----TRGMELLVAQSYSKNLGLYAERIGAMN  317 (467)
Q Consensus       266 i~Deay~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (467)
                      ++|+++....... +..........    ......+++.|++|+++.++  .|.++
T Consensus       207 ~vD~A~~~~~~~~-~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~--~g~ll  259 (462)
T d1c4ka2         207 EFDSAWVGYEQFI-PMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQI  259 (462)
T ss_dssp             EEECTTCCGGGSS-GGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEE
T ss_pred             EEechhhcccccc-CcCCcchhhccccccccCCccEEEEecCccccccc--ceEEE
Confidence            9999975432210 00000000000    01124789999999998654  36554

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.43  E-value=2e-13  Score=132.26  Aligned_cols=332  Identities=11%  Similarity=0.006  Sum_probs=177.2

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--CCc-----C-CC--CcchHHHHHHHHHHHhCCCCcccccCcee
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKE-----Y-LP--IEGLAAFNKVTAELLFGADNSVLKEQRVA  153 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--~~~-----Y-~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~  153 (467)
                      +.+||+-|       +..+|+.|++++.+.+.+..  ...     . .+  ..-+.+.|+.+++++....     ..+|+
T Consensus         3 ~~~~F~pG-------P~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~-----~~~i~   70 (361)
T d2c0ra1           3 RAYNFNAG-------PAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPT-----GYKVL   70 (361)
T ss_dssp             CCEECCSS-------SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCS-----SEEEE
T ss_pred             CCcccCCC-------CcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCC-----CCEEE
Confidence            56888754       34468999999988653210  000     0 01  1235667777877765431     23666


Q ss_pred             eeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCC--cchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcE
Q 012238          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTW--GNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (467)
Q Consensus       154 ~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y--~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (467)
                      +  +.|++.+...+ .+.....+|+++++..-..  ..+..+++..|..+..+..  +.....+++.+++.+.   ..+.
T Consensus        71 ~--~~gs~t~~~ea-~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~  142 (361)
T d2c0ra1          71 F--IQGGASTQFAM-IPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASS--EASNYMTLPKLQEIQL---QDNA  142 (361)
T ss_dssp             E--ESSHHHHHHHH-HHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEEC--GGGTTCSCCCGGGCCC---CTTE
T ss_pred             E--ECCCchHHHHH-HHhccccCCCceEEEeechhhhhhhhhhhhcCceeeeecc--ccccccchhhhhhhcc---cCcc
Confidence            6  55554444433 1444566888887666433  2455677888988888776  3345577777777665   3333


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCC
Q 012238          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (467)
Q Consensus       232 ~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~  311 (467)
                      ..+    +|.||...+..   ++.++|+++|+++++|.+ +.+.....  +..       .  -.+.+.|.+|.++++|.
T Consensus       143 ~~v----~~~tg~~~~~~---~i~~~~~~~~al~~vDav-ss~g~~~i--d~~-------~--~di~~~s~~k~~~~~~~  203 (361)
T d2c0ra1         143 AYL----HLTSNETIEGA---QFKAFPDTGSVPLIGDMS-SDILSRPF--DLN-------Q--FGLVYAGAQKNLGPSGV  203 (361)
T ss_dssp             EEE----EEESEETTTTE---ECSSCCCCTTSCEEEECT-TTTTSSCC--CGG-------G--CSEEEEETTTTTCCSSC
T ss_pred             eEE----EEecccceecc---eEEEeeccCCceEEEEee-cccccccc--ccc-------c--ceeEEEecccccccccC
Confidence            333    67889988876   455669999999999999 44443322  221       1  12445678999998874


Q ss_pred             ccceEEEecCCHHHHhhhhhh-hHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012238          312 RIGAMNVVCSSSDLAARCCEV-AVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQK  390 (467)
Q Consensus       312 RiG~~~~v~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~  390 (467)
                        +++++  ......+..... ....+..........  ...+......+...+.. ..   ..........+.++.+..
T Consensus       204 --~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~  273 (361)
T d2c0ra1         204 --TVVIV--REDLVAESPKHLPTMLRYDTYVKNNSLY--NTPPSFGIYMVNEVLKW-IE---ERGGLEGVQQANRKKASL  273 (361)
T ss_dssp             --EEEEE--EGGGSSSCCTTSCGGGCHHHHHHTTTCS--SCCCHHHHHHHHHHHHH-HH---HTTHHHHHHHHHHHHHHH
T ss_pred             --cEEEE--EhHHhhhCcccccccccccccccccccc--ccccceeeehhhhHHHh-hh---hccchHHHHHHHHHHHHH
Confidence              33321  222222221111 111122212222221  12222211111111100 00   011123444455555555


Q ss_pred             HHHHhhhccCCCCCc---ccccCCcce-EEec-CCCHHHHHHHHHcccEEEeCC----C--eEEecc-CChhhHHHHHHH
Q 012238          391 LFDSLSAKDKSGKDW---SFILRQIGM-FSFT-GLNKAQSDNMTNKWHVYMTKD----G--RISLAG-LSLAKCEYLADA  458 (467)
Q Consensus       391 l~~~l~~~~g~~~~~---~~~~~~~g~-f~~~-~l~~~~~~~ll~~~gI~v~~g----g--Ris~~~-~~~~~i~~~~~~  458 (467)
                      +..... ........   +-..+.+.. |... +.+.+.+...|+++||.+.+|    |  |||+.. .+.|+++.++++
T Consensus       274 ~~~~~~-~~~~~~~~~~~~~~rS~~~~~~~~~~~~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~  352 (361)
T d2c0ra1         274 IYDAID-QSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQF  352 (361)
T ss_dssp             HHHHHH-TSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHH
T ss_pred             hhhhhh-hcccccccCCChhhccceEEEEECCCcccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHH
Confidence            555554 33210000   001112211 1111 123455667777889999887    2  999754 478999999999


Q ss_pred             HHHHHHh
Q 012238          459 IIDSYHN  465 (467)
Q Consensus       459 l~~~l~~  465 (467)
                      |++..++
T Consensus       353 l~~~~~~  359 (361)
T d2c0ra1         353 MEHFKRS  359 (361)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9997764

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.40  E-value=6.9e-11  Score=117.85  Aligned_cols=333  Identities=9%  Similarity=-0.012  Sum_probs=196.7

Q ss_pred             HHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccc-------cCceeeeecCCchhHHHHHHHHHHH-h--
Q 012238          105 VVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK-------EQRVATVQGLSGTGSLRLAAALIER-Y--  174 (467)
Q Consensus       105 ~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~-------~~~i~~~~t~ggt~al~l~~~~l~~-~--  174 (467)
                      .+-+.+...++.+. ..|...+...++.+.+.+|+....|.+-.       ...-++  |.||+++...+...... .  
T Consensus        89 ~l~~~~~~~~n~n~-~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~--~~Ggs~anl~al~~AR~~~~~  165 (476)
T d1js3a_          89 MLADMLCGAIGCIG-FSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVI--QGSASEATLVALLAARTKVVR  165 (476)
T ss_dssp             HHHHHHHHHHCCCC-SSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEE--ESCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccc-cchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceE--CCcHHHHHHHHHHHHHHHHHH
Confidence            34444455555432 44544555667777777777665554321       122344  79999999887322111 1  


Q ss_pred             -----CCC---------CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEeCC
Q 012238          175 -----FPG---------AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGC  237 (467)
Q Consensus       175 -----~~g---------d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~  237 (467)
                           .+|         -.|++++-++..+...+...|..++.+|+  ++++.+|++.|++.+++.   ...+.+|+.+.
T Consensus       166 ~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~--d~~~~md~~~L~~~i~~~~~~g~~p~~Vvata  243 (476)
T d1js3a_         166 RLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPS--DGKFAMRASALQEALERDKAAGLIPFFVVATL  243 (476)
T ss_dssp             HHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred             hhcccccCcccccccCceEEEecccccHHHHHHHHhcCceEEEecc--CCCCCcCHHHHHHHHHHHHhcCCCcEEEeecC
Confidence                 011         15788888898999999999999999998  456899999999999752   23456778788


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcccCCCccceE
Q 012238          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGAM  316 (467)
Q Consensus       238 p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~~  316 (467)
                      +++.||.+=+.+   +|+++|++||+|+.+|.+|.++..-..+..     ..... ..-.-+.-+++|.++.|. -.|.+
T Consensus       244 Gtt~~G~iDpl~---~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~-----~~~~gi~~aDSit~d~HK~l~~P~-~~g~~  314 (476)
T d1js3a_         244 GTTSCCSFDNLL---EVGPICHEEDIWLHVDAAYAGSAFICPEFR-----HLLNGVEFADSFNFNPHKWLLVNF-DCSAM  314 (476)
T ss_dssp             SCTTTCCBCCHH---HHHHHHHHTTCEEEEECTTGGGGGGSTTTG-----GGGTTGGGCSEEEECHHHHSSCCS-SCEEE
T ss_pred             CCccceeeccHH---HHHHHHHhcCcEEEEecccchhhhhhcchh-----hhhcCCcccceeeecCccccccCC-cceee
Confidence            999999987765   667779999999999999988764321111     11111 112345667889888774 35666


Q ss_pred             EEecCCHHHHhhhhhhhHHHHHHHHHhh-------ccCc--cC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012238          317 NVVCSSSDLAARCCEVAVIQVKSQLKRL-------ARPM--YS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  386 (467)
Q Consensus       317 ~~v~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~--~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~  386 (467)
                      .  +.++.......... ..........       ....  .+ ....+...++...+.        .+.++++.++..+
T Consensus       315 l--~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G--------~~g~~~~i~~~~~  383 (476)
T d1js3a_         315 W--VKRRTDLTGAFKLD-PVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG--------VKGLQAYIRKHVQ  383 (476)
T ss_dssp             E--ESCHHHHHGGGC-------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred             c--ccchHHHHHHHhcC-hhhhccccccccccccccccccccchhhHHHHHHHHHHHHh--------HhHHHHHHHHHHH
Confidence            4  46654433200000 0000000000       0000  00 111222222222221        3446677777788


Q ss_pred             HHHHHHHHhhhccCCCCCcccc-cCCcceEEe--cCC---CHHHHHHHHHcccEEEeCC---C----eEEeccC--Chhh
Q 012238          387 VRQKLFDSLSAKDKSGKDWSFI-LRQIGMFSF--TGL---NKAQSDNMTNKWHVYMTKD---G----RISLAGL--SLAK  451 (467)
Q Consensus       387 ~r~~l~~~l~~~~g~~~~~~~~-~~~~g~f~~--~~l---~~~~~~~ll~~~gI~v~~g---g----Ris~~~~--~~~~  451 (467)
                      ..+++.+.++ +.+   +|+.. +|.-+..+|  .+.   +.++.+++.++..+++.+.   |    |+++++.  ++++
T Consensus       384 lA~~l~~~l~-~~~---~fel~~~p~l~iV~Fr~~~~d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~d  459 (476)
T d1js3a_         384 LSHEFEAFVL-QDP---RFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGH  459 (476)
T ss_dssp             HHHHHHHHHH-HCT---TEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHH
T ss_pred             HHHHHHHHHh-cCC---CeEEECCCceEEEEEEccCChHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHH
Confidence            8889999998 653   25555 344454333  232   2344556665533554443   4    9988643  5688


Q ss_pred             HHHHHHHHHHHHHhc
Q 012238          452 CEYLADAIIDSYHNV  466 (467)
Q Consensus       452 i~~~~~~l~~~l~~~  466 (467)
                      ++.+++.|+++.+++
T Consensus       460 id~~~~~i~~~a~~l  474 (476)
T d1js3a_         460 VRLAWEHIRGLAAEL  474 (476)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998765

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.39  E-value=1.7e-10  Score=112.85  Aligned_cols=340  Identities=12%  Similarity=0.035  Sum_probs=178.2

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (467)
                      +.+.||+..|.-...-|.  -.|.|.+|+.+.++... ...+........+.+.+++.. +       .+.+.+  +.+|
T Consensus        38 G~~ylD~~~g~~~~~lGh--~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~v~~--~~sg  105 (404)
T d1z7da1          38 DKRYYDFLSAYSSVNQGH--CHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLL-G-------YDKVLM--MNTG  105 (404)
T ss_dssp             CCEEEESSHHHHTTTTCB--TCHHHHHHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHH-T-------CSEEEE--ESSH
T ss_pred             CCEEEEccccHHHHhhhc--CcHHHHHHHHHHHHhCCCcccccchHHHHHHHHhhhhcc-c-------cceeee--eccc
Confidence            457899988754222232  36889999888775421 111111112223333333332 2       346777  8999


Q ss_pred             hhHHHHHHHHHHHhC--------CCCEEEEcCCCCcchHHHHhhC-CC---CeEEeeeecC--CCCCCChhhHHHHHHcC
Q 012238          161 TGSLRLAAALIERYF--------PGAKVLISSPTWGNHKNIFNDA-RV---PWSEYRYYDP--KTVGLDFEGMIADIKAA  226 (467)
Q Consensus       161 t~al~l~~~~l~~~~--------~gd~Vlv~~P~y~~~~~~~~~~-G~---~~~~v~~~~~--~~~~~d~~~l~~~l~~~  226 (467)
                      +++...+.++.....        ...+++...-+|.......... +.   +....|..+.  .....+.+.++..+.. 
T Consensus       106 s~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  184 (404)
T d1z7da1         106 AEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKD-  184 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTS-
T ss_pred             cchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHhcC-
Confidence            999998755443221        2236777777776443222111 10   0001111000  0001355666666653 


Q ss_pred             CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC
Q 012238          227 PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (467)
Q Consensus       227 ~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (467)
                       ++...+++-.-+...|.. ++++-+++|.++|++||+++|+||+..+|.-.+   ..+.. ....-.++++   .++|.
T Consensus       185 -~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG---~~~~~-e~~gv~PDiv---t~gK~  256 (404)
T d1z7da1         185 -PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTG---KLLCV-HHYNVKPDVI---LLGKA  256 (404)
T ss_dssp             -TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSSGG-GGGTCCCSEE---EECGG
T ss_pred             -CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCccc---ccccc-cccCCCCCEE---EEccc
Confidence             455566655555556765 456668999999999999999999987774211   11222 1112233444   67899


Q ss_pred             cccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238          306 LGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  385 (467)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~  385 (467)
                      ++-.+.-+|.++   ..+++.+.            +.......+.+.++++..++...|+.  +.+  +...+...+.-.
T Consensus       257 l~gG~~p~~~v~---~~~~i~~~------------~~~~~~~~T~~gnpl~~aaa~a~L~~--~~~--~~~~~~~~~~~~  317 (404)
T d1z7da1         257 LSGGHYPISAVL---ANDDIMLV------------IKPGEHGSTYGGNPLAASICVEALNV--LIN--EKLCENAEKLGG  317 (404)
T ss_dssp             GGTTSSCCEEEE---ECHHHHTT------------CCTTCCCCTTTTCHHHHHHHHHHHHH--HHH--TTHHHHHHHHHH
T ss_pred             ccCCCCCccccc---chHHHHcc------------CCCCCcCcCCCCCcchhhhhhhhhhh--hhc--chhhhhhccchh
Confidence            983336788884   77777665            44333333445566676676666541  110  111222323333


Q ss_pred             HHHHHHHHHhhhccCCCCCcccccCCcceEEe-cC---CCH-HHHHHHHHcccEEEeCCC----eEEec-cCChhhHHHH
Q 012238          386 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF-TG---LNK-AQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYL  455 (467)
Q Consensus       386 ~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~-~~---l~~-~~~~~ll~~~gI~v~~gg----Ris~~-~~~~~~i~~~  455 (467)
                      ..++.+.+.++ +.+.   ...+...|.++.+ +.   ... +...++++ +||++.+.|    ||+-. .+++++++++
T Consensus       318 ~~~~~l~~~~~-~~~~---v~~vrg~Gl~~~i~~~~~~~~~~~~~~~l~~-~Gl~~~~~~~~~ir~~Ppl~it~~~id~~  392 (404)
T d1z7da1         318 PFLENLKRELK-DSKI---VRDVRGKGLLCAIEFKNELVNVLDICLKLKE-NGLITRDVHDKTIRLTPPLCITKEQLDEC  392 (404)
T ss_dssp             HHHHHHHHHHT-TCTT---EEEEEEETTEEEEEECTTTCCHHHHHHHHHH-TTEECCEETTTEEEECCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHh-cCCC---eEEEEeeCcEEEEEEcCCcccHHHHHHHHHh-CCeEEecCCCCEEEEECCcCCCHHHHHHH
Confidence            33444555555 4442   2222333433321 11   222 34556665 599998765    55422 2489999999


Q ss_pred             HHHHHHHHHhc
Q 012238          456 ADAIIDSYHNV  466 (467)
Q Consensus       456 ~~~l~~~l~~~  466 (467)
                      +++|+++++++
T Consensus       393 ~~~l~~alk~~  403 (404)
T d1z7da1         393 TEIIVKTVKFF  403 (404)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999999876

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.28  E-value=3.4e-10  Score=111.75  Aligned_cols=342  Identities=11%  Similarity=0.007  Sum_probs=177.6

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (467)
                      +.+.||+..|.--..-|  +-.|.|.+++.+.++....  ..+ +.....++-+.+++....      .-+++.+  +++
T Consensus        40 G~~ylD~~~g~~~~~lG--h~~p~v~~ai~~q~~~~~~~~~~~-~~~~~~~la~~L~~~~~~------~~~~v~f--~~s  108 (431)
T d1zoda1          40 GRAILDFTSGQMSAVLG--HCHPEIVSVIGEYAGKLDHLFSEM-LSRPVVDLATRLANITPP------GLDRALL--LST  108 (431)
T ss_dssp             CCEEEETTHHHHTCTTC--BTCHHHHHHHHHHHHHCCCCCTTC-CCHHHHHHHHHHHHHSCT------TCCEEEE--ESC
T ss_pred             CCEEEEcccCHHhhhhc--CCCHHHHHHHHHHHhhcccccccc-ccHHHHHHHHHHHHhCCc------ccceeee--ccc
Confidence            45789998774412223  3368899999888765321  122 222223333334333211      1357888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCC------------CeEEeeeecCC-------CCCCC---hh
Q 012238          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV------------PWSEYRYYDPK-------TVGLD---FE  217 (467)
Q Consensus       160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~------------~~~~v~~~~~~-------~~~~d---~~  217 (467)
                      |++|.+.+.++.......++|+...-+|.......-..+.            ....++.....       ....+   .+
T Consensus       109 GseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (431)
T d1zoda1         109 GAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD  188 (431)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHH
T ss_pred             ccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHH
Confidence            9999999976655555567888888888665433322111            11122211000       00011   23


Q ss_pred             hHHHHHHc-CCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012238          218 GMIADIKA-APGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (467)
Q Consensus       218 ~l~~~l~~-~~~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~  295 (467)
                      .+...+.. .+.....+++-.-+--.|. .++++-+++|.++|++||+++|.||+..++.-.+.   .+.. ....-.++
T Consensus       189 ~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~---~~~~-~~~gv~PD  264 (431)
T d1zoda1         189 YAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT---MFAC-QRDGVTPD  264 (431)
T ss_dssp             HHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTH-HHHTCCCS
T ss_pred             HHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccc---cccc-ccCCCCcc
Confidence            33333322 2334455555443333344 46888899999999999999999999887642211   1111 12233344


Q ss_pred             EEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh--ccCccCCCchHHHHHHHHHhCChhhHHHH
Q 012238          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL--ARPMYSNPPVHGARIVANVVGNPALFDEW  373 (467)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~L~~~~~~~~~  373 (467)
                      ++   .++|.++ .|+-++.++   ..++..+.            ....  ....+.+.++++..++.+.|.--  .+  
T Consensus       265 i~---~~gK~l~-gG~p~~av~---~~~~~~~~------------~~~~~~~~~~T~~g~pl~~aaa~a~l~~i--~~--  321 (431)
T d1zoda1         265 IL---TLSKTLG-AGLPLAAIV---TSAAIEER------------AHELGYLFYTTHVSDPLPAAVGLRVLDVV--QR--  321 (431)
T ss_dssp             EE---EECHHHH-TTSSCEEEE---ECHHHHHH------------HHHTTCCCCCTTTTCHHHHHHHHHHHHHH--HH--
T ss_pred             hh---ccccccc-cccccceee---eeecchhh------------hhcccccccCCCCCCcchHHHHHHHHHHh--hh--
Confidence            44   3579888 788888874   55655554            2221  11223345555555555544311  00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEE--ec--C--------CCHHHHHHHHHcccEE----Ee
Q 012238          374 KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFS--FT--G--------LNKAQSDNMTNKWHVY----MT  437 (467)
Q Consensus       374 ~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~--~~--~--------l~~~~~~~ll~~~gI~----v~  437 (467)
                      +..+++..+.-+..++.+.+.+. +.+.   +..+...|.++.  +.  .        +..++.+.+++ +|+.    ..
T Consensus       322 ~~~~~~~~~~g~~l~~~l~~~~~-~~~~---i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~-~Gl~~~~~~~  396 (431)
T d1zoda1         322 DGLVARANVMGDRLRRGLLDLME-RFDC---IGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIVQL  396 (431)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHH-HCTT---EEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEECC
T ss_pred             hhhhHHHHHHHHHHhhhhhhhhh-cCCC---eEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHH-hCcccCeeee
Confidence            11122222222222333334444 4332   122233344432  11  0        11334556665 4764    23


Q ss_pred             CC-C---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          438 KD-G---RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       438 ~g-g---Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      ++ +   |++.. .++++++++++++|.++++++
T Consensus       397 ~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~v  430 (431)
T d1zoda1         397 PGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA  430 (431)
T ss_dssp             TTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            32 3   44432 248899999999999999875

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=5.5e-12  Score=121.32  Aligned_cols=331  Identities=11%  Similarity=-0.032  Sum_probs=172.2

Q ss_pred             cEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCc-----C---CC--CcchHHHHHHHHHHHhCCCCcccccCceee
Q 012238           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE-----Y---LP--IEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (467)
Q Consensus        85 ~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~-----Y---~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (467)
                      ++||+-|       +..+|+.|++++.+.+.+-....     .   .+  ..-..+.|+.++++++...     +..|++
T Consensus         2 ~~nF~pG-------P~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~-----~~~v~~   69 (360)
T d1bjna_           2 IFNFSSG-------PAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPS-----NYKVLF   69 (360)
T ss_dssp             CEECCSS-------SCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCT-----TEEEEE
T ss_pred             eEEeCCC-------CcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCC-----CCEEEE
Confidence            5788754       33468999999988653200000     0   01  1226788899999987642     336776


Q ss_pred             eecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcc--hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEE
Q 012238          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (467)
Q Consensus       155 ~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~  232 (467)
                        +.|++.+...+. ......+++.|++..-.+..  +....+..|...+.+...  .+...+.+.+++.+.   .++++
T Consensus        70 --~~gs~t~~~~a~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~  141 (360)
T d1bjna_          70 --CHGGGRGQFAAV-PLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKV--TVDGLRAVKPMREWQ---LSDNA  141 (360)
T ss_dssp             --ESSHHHHHHHHH-HHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEE--EETTEEEECCGGGCC---CCSSC
T ss_pred             --ECCchHHHHhhh-hhcccccccccceecccchhhhhHHHHhhcCccceeeccc--cCCCcchhhhhhhhc---cCCce
Confidence              777766666552 33345577888887766643  445556666665555442  223345555545444   34445


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCc
Q 012238          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER  312 (467)
Q Consensus       233 i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R  312 (467)
                      +++...+|-||+..+...+     .++.+++++++|.+ +.+...  +.+.+.         -.+.+.|.+|.+++|+- 
T Consensus       142 v~v~~~~~~t~~~~~~~~i-----~~~~~~~~v~vDa~-~~~~~~--~vd~~~---------~dv~~~ss~k~~~~~~~-  203 (360)
T d1bjna_         142 AYMHYCPNETIDGIAIDET-----PDFGADVVVAADFS-STILSR--PIDVSR---------YGVIYAGAQKNIGPAGL-  203 (360)
T ss_dssp             SCEEECSEETTTTEECCCC-----CCCCTTCCEEEECT-TTTTSS--CCCGGG---------CSEEEEETTTTTSSTTC-
T ss_pred             eEEEecccccccCccccce-----ecccccceeeeeee-ccccce--eeeecc---------ceeEEEEcccccccCCC-
Confidence            5555668888887765432     24567899999988 434332  233321         24566777888876653 


Q ss_pred             cceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238          313 IGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  392 (467)
Q Consensus       313 iG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~  392 (467)
                      .|.++  ..........+................. . ..+......+.....    ....+...+...++.++....+.
T Consensus       204 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  275 (360)
T d1bjna_         204 TIVIV--REDLLGKANIACPSILDYSILNDNGSMF-N-TPPTFAWYLSGLVFK----WLKANGGVAEMDKINQQKAELLY  275 (360)
T ss_dssp             EEEEE--EGGGCSCCCTTSCGGGCHHHHHHTTTCS-S-CCCHHHHHHHHHHHH----HHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             ceeEe--eehhhhhccccCCcchhhHHHHhhhhhc-c-ccccchHHHHHHHHH----HHhhhhhHHHHHHHHHHHHHHHH
Confidence            33332  2222111111111111122212222111 1 122211111111110    00001113344444444455555


Q ss_pred             HHhhhccCCCCCccccc-----CCc-ceEEec-CCCHHHHHHHHHcccEEEeCC----C--eEEecc-CChhhHHHHHHH
Q 012238          393 DSLSAKDKSGKDWSFIL-----RQI-GMFSFT-GLNKAQSDNMTNKWHVYMTKD----G--RISLAG-LSLAKCEYLADA  458 (467)
Q Consensus       393 ~~l~~~~g~~~~~~~~~-----~~~-g~f~~~-~l~~~~~~~ll~~~gI~v~~g----g--Ris~~~-~~~~~i~~~~~~  458 (467)
                      +.+. ..+.   ..+..     ..+ --|.+. +.+.+.+..+++++||.+..|    |  |||+.. .++|++++++++
T Consensus       276 ~~~~-~~~~---~~~~~~~~~rs~~v~~f~~~~~~~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~  351 (360)
T d1bjna_         276 GVID-NSDF---YRNDVAKRNRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDF  351 (360)
T ss_dssp             HHHH-HCSS---EECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHH
T ss_pred             Hhhh-cccc---ccccCCcccccceEEEEEcCCcccHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHH
Confidence            5544 4332   11111     111 113332 345555566667789999887    3  999865 377999999999


Q ss_pred             HHHHHHh
Q 012238          459 IIDSYHN  465 (467)
Q Consensus       459 l~~~l~~  465 (467)
                      |++..++
T Consensus       352 l~e~~~~  358 (360)
T d1bjna_         352 MVEFERR  358 (360)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9997654

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.12  E-value=2.5e-09  Score=106.11  Aligned_cols=340  Identities=11%  Similarity=0.015  Sum_probs=171.7

Q ss_pred             CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC---CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (467)
Q Consensus        82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~---~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (467)
                      +.+.|||..|.--..-|.  -.|.|.+++.+.++...   ...+ .......+.+.+++.+......  .-+++++  ++
T Consensus        52 G~~ylD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~~~~~~~~~-~~~~~~~~a~~lae~l~~~~~~--~~~~v~f--~~  124 (461)
T d1ohwa_          52 GNRMLDLYSQISSIPIGY--SHPALVKLVQQPQNVSTFINRPAL-GILPPENFVEKLRESLLSVAPK--GMSQLIT--MA  124 (461)
T ss_dssp             SCEEEESSHHHHTCSSCB--TCHHHHHHHHCGGGHHHHHCCCCT-TTSCBTTHHHHHHHTGGGGCCT--TCCEEEE--ES
T ss_pred             CCEEEEcccCHHHHhhcC--CcHHHHHHHHHHHhhhhhcccccc-cccchHHHHHHHHHHHHhhhcc--Ccceeee--ec
Confidence            457899987754222233  35778888876553210   0111 1111223455666665432111  1357888  99


Q ss_pred             CchhHHHHHHHHHHHh--------------------------CCCCEEEEcCCCCcchHH-HHhhCCCC-----------
Q 012238          159 SGTGSLRLAAALIERY--------------------------FPGAKVLISSPTWGNHKN-IFNDARVP-----------  200 (467)
Q Consensus       159 ggt~al~l~~~~l~~~--------------------------~~gd~Vlv~~P~y~~~~~-~~~~~G~~-----------  200 (467)
                      +|++|.+.+.++....                          .+..+|+...-+|.+... .+...|-+           
T Consensus       125 sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~  204 (461)
T d1ohwa_         125 CGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD  204 (461)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCC
T ss_pred             chhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccC
Confidence            9999999985543221                          123478988888875432 22222211           


Q ss_pred             eEEeeeecCC-CC-----------CCChhhHHHHHH---cCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCe
Q 012238          201 WSEYRYYDPK-TV-----------GLDFEGMIADIK---AAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHI  264 (467)
Q Consensus       201 ~~~v~~~~~~-~~-----------~~d~~~l~~~l~---~~~~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~  264 (467)
                      ....+..... ..           ..+++.+++.+.   ..+....++++-.-+...|. .++.+-+++|.++|++||++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gil  284 (461)
T d1ohwa_         205 WPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCA  284 (461)
T ss_dssp             CCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCE
T ss_pred             CcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcc
Confidence            1111110000 00           012344444442   23455556666665555564 46788899999999999999


Q ss_pred             eEEeccCCCCCCCCCCCChhHHHHH-HhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHh
Q 012238          265 PFFDVAYQGFASGSLDNDASSVRLF-ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKR  343 (467)
Q Consensus       265 li~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~  343 (467)
                      +|+||+..++.-.+   ..+....+ .+..++++   .++|.++ .    |+..   ... .+..            ...
T Consensus       285 lI~DEV~tG~gRtG---~~~~~e~~gi~~~PDiv---~~gK~l~-~----g~~~---~~~-~~~~------------~~~  337 (461)
T d1ohwa_         285 FLVDEVQTGGGSTG---KFWAHEHWGLDDPADVM---TFSKKMM-T----GGFF---HKE-EFRP------------NAP  337 (461)
T ss_dssp             EEEECTTTCSSTTS---SSSGGGGGCCSSCCSEE---EECGGGS-S----EEEE---ECG-GGSC------------SST
T ss_pred             eecccccccccccc---ccccccccccccCchhh---hhhhccc-c----cccc---ccc-cccc------------ccc
Confidence            99999988885321   11111111 01113334   4678775 2    4442   222 2221            111


Q ss_pred             hccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCCCcccccCCcceEEecCC-
Q 012238          344 LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFSFTGL-  420 (467)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g--~~~~~~~~~~~~g~f~~~~l-  420 (467)
                      .....+.+.+.++..++.+.|+-  +.+      +...++.++.-++|.+.|+ ++.  .|..+..+...|- ++-+.+ 
T Consensus       338 ~~~~~T~~g~p~~~aaa~a~l~~--i~~------~~l~~~~~~~g~~l~~~l~-~l~~~~~~~i~~vrG~Gl-~~~ie~~  407 (461)
T d1ohwa_         338 YRIFNTWLGDPSKNLLLAEVINI--IKR------EDLLSNAAHAGKVLLTGLL-DLQARYPQFISRVRGRGT-FCSFDTP  407 (461)
T ss_dssp             TSSCCSCSSCHHHHHHHHHHHHH--HHH------TTHHHHHHHHHHHHHHHHH-HHHHHCTTTCEEEEEETT-EEEEECS
T ss_pred             cccccccccccccchhhcccchh--hhh------hhHHHHHHHHHHHHHHHHH-HHHhhCCCceEEeeeeeE-EEEEEcC
Confidence            11122334445555555555431  100      1233334444444444444 321  1111122223333 322333 


Q ss_pred             CH----HHHHHHHHcccEEEeCCC----eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238          421 NK----AQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       421 ~~----~~~~~ll~~~gI~v~~gg----Ris~~-~~~~~~i~~~~~~l~~~l~~~  466 (467)
                      +.    ++...+++ +||++.+.|    ||.-. .+++++++.++++|.++++++
T Consensus       408 ~~~~~~~i~~~~~~-~Gll~~~~~~~~ir~~PpL~it~~eid~~~~~l~~~l~ef  461 (461)
T d1ohwa_         408 DESIRNKLISIARN-KGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF  461 (461)
T ss_dssp             SHHHHHHHHHHHHH-TTEECEEETTTEEECCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHH-CCeEEeeCCCCEEEEeCCcCCCHHHHHHHHHHHHHHHhcC
Confidence            22    34555555 599998855    44422 248899999999999999864

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.10  E-value=5.6e-10  Score=107.22  Aligned_cols=188  Identities=10%  Similarity=-0.077  Sum_probs=110.2

Q ss_pred             CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC---------CCcCCC--CcchHHHHHHHHHHHhCCCCcccccCce
Q 012238           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---------NKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRV  152 (467)
Q Consensus        84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~---------~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i  152 (467)
                      .+.||+.|-       ..+|+.|++++.+.+.+-.         .++ .+  ..-..+.|+.++++++...     +..|
T Consensus         3 ~~~nF~pGP-------~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHR-s~~~~~~~~~~r~~l~~l~~~~~-----~~~i   69 (360)
T d1w23a_           3 QVFNFNAGP-------SALPKPALERAQKELLNFNDTQMSVMELSHR-SQSYEEVHEQAQNLLRELLQIPN-----DYQI   69 (360)
T ss_dssp             CCEECCSSS-------CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT-SHHHHHHHHHHHHHHHHHHTCCT-----TEEE
T ss_pred             ceeEeCCCC-------cCCCHHHHHHHHHHHHhhcccCccccccCcC-CHHHHHHHHHHHHHHHHHhCCCC-----CCEE
Confidence            577888652       3358999999988542200         000 00  1235778899999986542     2356


Q ss_pred             eeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCc--chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCc
Q 012238          153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWG--NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS  230 (467)
Q Consensus       153 ~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~--~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  230 (467)
                      ++  ++|++++...++ ......++++|++....+.  .+...++..+...+.....  .....+.+.+++...   ..+
T Consensus        70 ~~--~~gt~~~~~~~~-~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~  141 (360)
T d1w23a_          70 LF--LQGGASLQFTML-PMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTK--ANSYQSIPDFSEFQL---NEN  141 (360)
T ss_dssp             EE--ESSHHHHHHHHH-HHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECG--GGTSCSCCCGGGCCC---CTT
T ss_pred             EE--eCCcHHHHHHHH-HhhhcccCcccceeeccchhhhhHHHHHHhhhcceeeccc--cccccchhhhhhccc---ccc
Confidence            66  666666665542 3344557888888776543  3445556666655555442  222234444444333   233


Q ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCC
Q 012238          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA  310 (467)
Q Consensus       231 ~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G  310 (467)
                      ...+    +|-||...+.+   +|.++|+++|+++|+|.+ +.+.....+.+.+           .+.+.+++|.++++|
T Consensus       142 ~~~~----~~~tg~~~~~~---~i~~~~~~~g~l~ivDav-qs~g~~~id~~~~-----------~vd~~~~~~~k~~~~  202 (360)
T d1w23a_         142 DAYL----HITSNNTIYGT---QYQNFPEINHAPLIADMS-SDILSRPLKVNQF-----------GMIYAGAQKNLGPSG  202 (360)
T ss_dssp             EEEE----EEESEETTTTE---ECSSCCCCCSSCEEEECT-TTTTSSCCCGGGC-----------SEEEEETTTTTSCTT
T ss_pred             ccee----EecCCccccce---eeeeccccceeeEEeecc-ccccccccccccc-----------cceEEeeccccccCC
Confidence            3333    57789988876   566679999999999999 5554433322221           244557778777666


Q ss_pred             C
Q 012238          311 E  311 (467)
Q Consensus       311 ~  311 (467)
                      .
T Consensus       203 ~  203 (360)
T d1w23a_         203 V  203 (360)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=98.43  E-value=9.2e-06  Score=78.49  Aligned_cols=266  Identities=9%  Similarity=0.016  Sum_probs=141.2

Q ss_pred             cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEE
Q 012238          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (467)
Q Consensus       157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~  232 (467)
                      -.|+++....+. +.......++++++.-+++.+...    ++..|.+++.++.++.   +.+.++    +   .+.+..
T Consensus       131 ~~ga~a~~~~~~-~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~---~~~~~~----~---~~~~Aa  199 (437)
T d1wyua1         131 YDGATALAEGVL-LALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGG---RTPLPE----V---GEEVGA  199 (437)
T ss_dssp             SSHHHHHHHHHH-HHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTT---BCCCCC----C---CTTEEE
T ss_pred             hHHHHHHHHHHH-HHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeecccc---cchhhh----h---ccceeE
Confidence            355555555442 233344678999999888766443    4578999999987432   233222    2   257788


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC---
Q 012238          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY---  309 (467)
Q Consensus       233 i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~---  309 (467)
                      +++.+|| -.|..-   +++++++++++.|.+++.|..-  ...+..  ..+     -+.+-+++ +++ +|.||.|   
T Consensus       200 vmi~~Pn-t~G~~e---d~~~i~~~~h~~G~l~~~~ad~--~al~~l--~~P-----g~~GaDi~-~g~-~q~fg~p~g~  264 (437)
T d1wyua1         200 VVVQNPN-FLGALE---DLGPFAEAAHGAGALFVAVADP--LSLGVL--KPP-----GAYGADIA-VGD-GQSLGLPMGF  264 (437)
T ss_dssp             EEEESSC-TTSBCC---CHHHHHHHHHHTTCEEEEECCT--TGGGTB--CCH-----HHHTCSEE-EEE-CTTTTCCCGG
T ss_pred             EEEcccc-cccccc---chHHHHHHhhhccceEEeeech--hhhhcc--ccc-----cccccceE-eec-cceeccccCC
Confidence            8888884 467763   4678888899999987766432  222111  111     12344444 555 5555432   


Q ss_pred             -CCccceEEEecCCHHHHhhhhhh----------------h-HHHHHHHHHhhccCc--cCCCchHHHHHHHHHhCChhh
Q 012238          310 -AERIGAMNVVCSSSDLAARCCEV----------------A-VIQVKSQLKRLARPM--YSNPPVHGARIVANVVGNPAL  369 (467)
Q Consensus       310 -G~RiG~~~~v~~~~~~~~~~~~~----------------~-~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~~~  369 (467)
                       |--.|++.   ..+++... -++                . +-.-.+.+++-....  +.+...++..+...+...+  
T Consensus       265 GGP~~G~~a---~~~~l~r~-lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG--  338 (437)
T d1wyua1         265 GGPHFGFLA---TKKAFVRQ-LPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALG--  338 (437)
T ss_dssp             GCSCCEEEE---ECGGGGGG-CCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHH--
T ss_pred             CcCcccccc---ccchhhcc-ccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcC--
Confidence             22346664   33443332 000                0 000001122221111  2222222222222111111  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceE-Ee---cCCCHHHHHHHHHcccEEE----eC---
Q 012238          370 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF-SF---TGLNKAQSDNMTNKWHVYM----TK---  438 (467)
Q Consensus       370 ~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f-~~---~~l~~~~~~~ll~~~gI~v----~~---  438 (467)
                          .+.++++.++...+..++.+.|. +++.   ++...+ +.+| -|   .+.+.+.+.+.+.++||..    .+   
T Consensus       339 ----~~GL~~ia~~a~~~A~yl~~~L~-~~~g---~~~~~~-~~~f~ef~v~~~~~~~~i~k~L~d~G~~~~~~~~~~~~  409 (437)
T d1wyua1         339 ----PEGLREVALKSVEMAHKLHALLL-EVPG---VRPFTP-KPFFNEFALALPKDPEAVRRALAERGFHGATPVPREYG  409 (437)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHT-TSTT---CEECSC-SSBCSEEEEECSSCHHHHHHHHHHTTCCCCEECCTTSC
T ss_pred             ----cccHHHHHHHHHHHHHHHHHHhh-hcCC---eeccCC-CCeeeEEEEECCCCHHHHHHHHHhCCCCCCcccccCCC
Confidence                35578888888899999999998 6531   343323 2333 11   2445555444444468852    11   


Q ss_pred             CC--eEEecc-CChhhHHHHHHHHHHHH
Q 012238          439 DG--RISLAG-LSLAKCEYLADAIIDSY  463 (467)
Q Consensus       439 gg--Ris~~~-~~~~~i~~~~~~l~~~l  463 (467)
                      .+  .|+++. .+++++++++++|++++
T Consensus       410 ~~~lli~~TE~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         410 ENLALFAATELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             CCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence            12  566653 36799999999999874

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.24  E-value=0.00065  Score=65.99  Aligned_cols=290  Identities=11%  Similarity=0.036  Sum_probs=153.4

Q ss_pred             hHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhC-CC----CEEEEcCCCC-cchHHHHhhCCCCe
Q 012238          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF-PG----AKVLISSPTW-GNHKNIFNDARVPW  201 (467)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~-~g----d~Vlv~~P~y-~~~~~~~~~~G~~~  201 (467)
                      +-++...|+++.. .   ++  .|.-.  -.|+|+..+.+.+..+... .|    ..+.+..+.+ ..+.......+..+
T Consensus       108 lfEfQtmi~eLTG-M---dv--aNaS~--yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (471)
T d1wyub1         108 MWELGEYLKALTG-M---DA--ITLEP--AAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQV  179 (471)
T ss_dssp             HHHHHHHHHHHHT-C---SE--EECCC--SSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHhC-C---Cc--ccccc--chHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeeeeccccee
Confidence            4567777777742 2   11  22222  3455554444322222111 22    2344455555 44555556677777


Q ss_pred             EEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012238          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (467)
Q Consensus       202 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~  281 (467)
                      +.++.  +.....|.+.+.....   .....+++.+|++.-+..-   +.+++++++++.+..+++|.+--....+ .  
T Consensus       180 ~~~~~--~~~~~~~~~~~~~~~~---~~~a~v~v~~p~~~g~~e~---~~~~~~~~~h~~g~~~~~~~~~~~~~~~-l--  248 (471)
T d1wyub1         180 REIPS--GPEGEVDLEALKRELG---PHVAALMLTNPNTLGLFER---RILEISRLCKEAGVQLYYDGANLNAIMG-W--  248 (471)
T ss_dssp             EEECB--CTTSSBCHHHHHHHCS---TTEEEEEECSSCTTSCCCT---THHHHHHHHHHHTCEEEEEGGGGGGTTT-T--
T ss_pred             ecccc--cccccccchhhhhhhh---ccccceeeccCCCcccccc---hhhhhHHHHHhccccccccccchhhhhh-c--
Confidence            77776  4456678888877665   5677788888876655433   3456777788888888887663222221 1  


Q ss_pred             ChhHHHHHHhcCCeEEEEecCccCccc----CCCccceEEEecCCHHHHhhhhhhhHHHHHHH---------------HH
Q 012238          282 DASSVRLFATRGMELLVAQSYSKNLGL----YAERIGAMNVVCSSSDLAARCCEVAVIQVKSQ---------------LK  342 (467)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~----~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~---------------l~  342 (467)
                      ..++     ..+..+++ .+..+.||.    .|--+|++.   ..++++..        +-.+               =+
T Consensus       249 ~~p~-----~~g~div~-vg~~q~~G~P~~~GGP~~G~~a---~~~~~~R~--------~PGRiV~~~~~~~~~~~~REq  311 (471)
T d1wyub1         249 ARPG-----DMGFDVVH-LNLHKTFTVPHGGGGPGSGPVG---VKAHLAPY--------LPVPLVERGEEGFYLDFDRPK  311 (471)
T ss_dssp             CCHH-----HHTCSEEE-CCTTTTTCCCCTTSCCCCCCEE---ECGGGGGG--------CCSCEEEECSSCEEEECCCTT
T ss_pred             cccC-----cccccccc-ccccccccccccccccccccee---ehhhhhcc--------CCCceecCCCccccccCCCcc
Confidence            1111     22333443 344554543    344467774   44554443        0000               00


Q ss_pred             hhccCccCCCc-hHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceE---Eec
Q 012238          343 RLARPMYSNPP-VHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF---SFT  418 (467)
Q Consensus       343 ~~~~~~~~~~~-~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f---~~~  418 (467)
                      .+.+. ..+.+ .+...++...+.   +..  .+.+++..+...++..++.+.|+ ..|    ++.. ..+.||   +..
T Consensus       312 hIrRe-~actnqaL~al~A~vYls---llG--~~GL~elA~~~~~~A~Yla~~L~-~~G----~~~~-~~~~ff~EFvv~  379 (471)
T d1wyub1         312 SIGRV-RSFYGNFLALVRAWAYIR---TLG--LEGLKKAAALAVLNARYLKELLK-EKG----YRVP-YDGPSMHEFVAQ  379 (471)
T ss_dssp             CCCCS-SSTTSCHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHHHHHHHHH-HTT----CBCS-SCSSCCSCEEEB
T ss_pred             cccch-hhhhhhHHHHHHHHHHHH---HhC--chhHHHHHHHHHHHHHHHHHHHh-hcC----ceec-cCcceeeEEeec
Confidence            11111 11222 222222222221   111  35688888888899999999998 766    3432 233333   211


Q ss_pred             ---CCCHH-HHHHHHHcccEEEe----C----CC-eEEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238          419 ---GLNKA-QSDNMTNKWHVYMT----K----DG-RISLAGL-SLAKCEYLADAIIDSYHNV  466 (467)
Q Consensus       419 ---~l~~~-~~~~ll~~~gI~v~----~----gg-Ris~~~~-~~~~i~~~~~~l~~~l~~~  466 (467)
                         +.+.+ ..++|++ +|+.-.    |    ++ -|+.+.. ++++|++++++|++++++.
T Consensus       380 ~~~~~~~~~i~k~L~~-~G~~~~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~  440 (471)
T d1wyub1         380 PPEGFRALDLAKGLLE-LGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKP  440 (471)
T ss_dssp             CSTTCCHHHHHHHHHH-TTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSC
T ss_pred             CCCCCCHHHHHHHHHH-cCCCCCcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence               23444 4566766 587531    1    12 4565533 7799999999999998753