Citrus Sinensis ID: 012246

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------
MEVDKHTRQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGKLVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANSQPMNMFRFGSPTMQNQIVSLPSSSCVPFSGGAATDNSPLSGKMVGERRRLIKWLWSPIFIMGRSQEGESCSSWRIFGPFLSCIAYDINALSIAWL
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHcccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccEEEEEccccccccccccHHcccHHHHHHcccccccccc
ccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccHHcccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEcccccccccccHHHccHHHHHHHHHHHHHHHHHc
MEVDKHTRQLREekmvkfdppgavtssqhpnvnhsvvpelqrnamppprfevhdaapqnknlgdlgklvnfsqstappkgelgpcsgqfdrkrsgnltqgevrecsmmtvgsshcgsnqvaydldmsrasssglnddvrkvispsergktetieptvtsssggsgssfnrtskqstgdnslkrksrdavdsecqseaagfesgagnktaqrsgscrrSRAAEVHNLSERRRRDRINEKMRALQELIphcnktdkaSMLDEAIEYLKSLQLQLQVMWMgsgmaplmfpgmqhymsrmgmgmgppplpsvtnpmhfsrvplvdqsmSMAQAQNRAVMCQasvlnpvnyqnqmqnsnFTEQYARymgfhpmqansqpmnmfrfgsptmqnqivslpssscvpfsggaatdnsplsgkmVGERRRLIKWLWspifimgrsqegescsswrifgpflSCIAYDINALSIAWL
mevdkhtrqlreekmvkfdppgavtssqhpnvnHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGKLVNFSQstappkgelgpcsgqfdrkrsgnltqGEVRECSMMTVGSSHCGSNQVAYDLDMSRasssglnddvrkvispsergktetieptvtsssggsgssfnrtskqstgdnslkrksrdaVDSECQSeaagfesgagnktaqrsgscrrsraaevhnlserrrrdrINEKMRALqeliphcnktdKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANSQPMNMFRFGSPTMQNQIVSLPSSSCVPFSGgaatdnsplsgkmVGERRRLIKWLWSPIFIMGRSQEGESCSSWRIFGPFLSCIAYDINALSIAWL
MEVDKHTRQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGKLVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTsssggsgssFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRmgmgmgpppLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANSQPMNMFRFGSPTMQNQIVSLPSSSCVPFSGGAATDNSPLSGKMVGERRRLIKWLWSPIFIMGRSQEGESCSSWRIFGPFLSCIAYDINALSIAWL
****************************************************************************************************************************************************************************************************************************************************LIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHY****************************************AVMCQASVLNPVNYQ*******FTEQYARYMGF**************************************************VGERRRLIKWLWSPIFIMGRSQEGESCSSWRIFGPFLSCIAYDINALSIAW*
*******************************************************************************************************************************************************************************************************************************************NEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMF****************************************************************************************************************************************IKWLWSPI**************WRIFGPFLSCIAYDINALSIAWL
********QLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGKLVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPS*********************************************************************************SERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANSQPMNMFRFGSPTMQNQIVSLPSSSCVPFSGGAATDNSPLSGKMVGERRRLIKWLWSPIFIMGRSQEGESCSSWRIFGPFLSCIAYDINALSIAWL
***DKHTRQLREEKMVKFDPP*********************NAMP****************************************************************************************************************************************************************************************RRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANSQPMNMFRFGSPTM*******************************GERRRLIKWLWSPIFIMGRS***ESCSSWRIFGPFLSCIAYDINALSIAWL
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MEVDKHTRQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGKLVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANSQPMNMFRFGSPTMQNQIVSLPSSSCVPFSGGAATDNSPLSGKMVGERRRLIKWLWSPIFIMGRSQEGESCSSWRIFGPFLSCIAYDINALSIAWL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query467 2.2.26 [Sep-21-2011]
Q84LH8444 Transcription factor PIF5 yes no 0.561 0.590 0.445 3e-46
Q8W2F3430 Transcription factor PIF4 no no 0.593 0.644 0.413 5e-43
O80536524 Transcription factor PIF3 no no 0.357 0.318 0.556 1e-36
Q8GZM7478 Transcription factor PIF1 no no 0.580 0.566 0.382 2e-32
Q9SVU6413 Transcription factor bHLH no no 0.359 0.406 0.427 2e-27
Q8L5W8416 Transcription factor PIL1 no no 0.291 0.326 0.448 2e-24
Q9SVU7445 Putative transcription fa no no 0.310 0.325 0.409 3e-23
Q9FUA4373 Transcription factor SPAT no no 0.207 0.260 0.582 1e-22
Q7XHI7307 Transcription factor bHLH no no 0.316 0.482 0.394 5e-21
Q9FHA2210 Transcription factor ALC no no 0.169 0.376 0.592 1e-20
>sp|Q84LH8|PIF5_ARATH Transcription factor PIF5 OS=Arabidopsis thaliana GN=PIF5 PE=1 SV=1 Back     alignment and function desciption
 Score =  186 bits (473), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 142/319 (44%), Positives = 190/319 (59%), Gaps = 57/319 (17%)

Query: 106 SMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSG 165
           S++TVG SHCGSNQ           S+ ++      +S S+R K    E   TSS G SG
Sbjct: 146 SVITVGPSHCGSNQ-----------STNIHQATTLPVSMSDRSKN-VEERLDTSSGGSSG 193

Query: 166 SSFNRTSKQSTGDNS--LKRKSRDAVDSECQSEA---AGFESG----AGNKTAQRSGSCR 216
            S+ R +K++    S  + RK +  +D++ +S +    G  S      GNK++QRSGS R
Sbjct: 194 CSYGRNNKETVSGTSVTIDRKRKHVMDADQESVSQSDIGLTSTDDQTMGNKSSQRSGSTR 253

Query: 217 RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMW 276
           RSRAAEVHNLSERRRRDRINE+M+ALQELIPHC++TDKAS+LDEAI+YLKSLQ+QLQVMW
Sbjct: 254 RSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQVMW 313

Query: 277 MGSGM--------APLMFPGMQH--YMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSM 326
           MGSGM        +P+MFPG+Q   Y+++M M           + M  S+ P++++S   
Sbjct: 314 MGSGMAAAAAAAASPMMFPGVQSSPYINQMAM----------QSQMQLSQFPVMNRS--- 360

Query: 327 AQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHP--------MQ-ANSQPMNM 377
           A   +  ++CQ    NPV  Q Q QN   +EQ ARYMG  P        MQ    QP +M
Sbjct: 361 APQNHPGLVCQ----NPVQLQLQAQNQILSEQLARYMGGIPQMPPAGNQMQTVQQQPADM 416

Query: 378 FRFGSPTMQNQIVSLPSSS 396
             FGSP      +S P+++
Sbjct: 417 LGFGSPAGPQSQLSAPATT 435
Transcription factor acting negatively in the phytochrome B signaling pathway to promote the shade-avoidance response. Regulates PHYB abundance at the post-transcriptional level, possibly via the ubiquitin-proteasome pathway. Promotes ethylene activity in the dark. May regulate the expression of a subset of genes by binding to the G-box motif. Might be involved in the integration of light-signals to control both circadian and photomorphogenic processes.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8W2F3|PIF4_ARATH Transcription factor PIF4 OS=Arabidopsis thaliana GN=PIF4 PE=1 SV=1 Back     alignment and function description
>sp|O80536|PIF3_ARATH Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1 Back     alignment and function description
>sp|Q8GZM7|PIF1_ARATH Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SVU6|BH023_ARATH Transcription factor bHLH23 OS=Arabidopsis thaliana GN=BHLH23 PE=2 SV=1 Back     alignment and function description
>sp|Q8L5W8|PIL1_ARATH Transcription factor PIL1 OS=Arabidopsis thaliana GN=PIL1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SVU7|BH056_ARATH Putative transcription factor bHLH056 OS=Arabidopsis thaliana GN=BHLH56 PE=4 SV=2 Back     alignment and function description
>sp|Q9FUA4|SPT_ARATH Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT PE=1 SV=1 Back     alignment and function description
>sp|Q7XHI7|BH127_ARATH Transcription factor bHLH127 OS=Arabidopsis thaliana GN=BHLH127 PE=2 SV=1 Back     alignment and function description
>sp|Q9FHA2|ALC_ARATH Transcription factor ALC OS=Arabidopsis thaliana GN=ALC PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query467
449463597550 PREDICTED: transcription factor PIF5-lik 0.856 0.727 0.588 1e-120
225446765531 PREDICTED: transcription factor PIF5-lik 0.858 0.755 0.577 1e-117
302143504544 unnamed protein product [Vitis vinifera] 0.775 0.665 0.628 1e-116
224082612380 predicted protein [Populus trichocarpa] 0.773 0.95 0.640 1e-109
356567480397 PREDICTED: transcription factor PIF5-lik 0.790 0.929 0.548 1e-96
356553623562 PREDICTED: transcription factor PIF5-lik 0.882 0.733 0.513 2e-96
356501423562 PREDICTED: transcription factor PIF4-lik 0.873 0.725 0.513 7e-95
224066527233 predicted protein [Populus trichocarpa] 0.486 0.974 0.753 3e-85
356526934266 PREDICTED: transcription factor PIF5-lik 0.561 0.984 0.622 3e-71
357113061418 PREDICTED: transcription factor PIF5-lik 0.449 0.502 0.509 1e-50
>gi|449463597|ref|XP_004149520.1| PREDICTED: transcription factor PIF5-like [Cucumis sativus] gi|449505798|ref|XP_004162571.1| PREDICTED: transcription factor PIF5-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/433 (58%), Positives = 307/433 (70%), Gaps = 33/433 (7%)

Query: 3   VDKHTRQLREEKMVKFDPPGAVTSSQHPNVNHSV---------VPELQRNAMPPPRFEVH 53
           V +  +  +++K  +F   GA  ++ H    + V         + E   N MPPPRF+  
Sbjct: 117 VKQPIKHFQDDKQTRF---GAFDTATHVTFGNFVKKNSKPPASLAEFPMNTMPPPRFQFQ 173

Query: 54  DAAPQNKNLGDLGKLVNFSQSTAPP-KGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGS 112
           D++ QNK+LGDLGKLVNFSQ   PP KG+LG  +G    + SGNL QGE R+CS MTVGS
Sbjct: 174 DSSRQNKDLGDLGKLVNFSQVPVPPLKGDLGSSNG---GRESGNLIQGEGRDCSGMTVGS 230

Query: 113 SHCGSNQVAY--DLDMSRASSSGL----------NDDVRKVISPSERGKTETIEPTVTSS 160
           SHCGSNQV    DLD+SR S+SG            +D RK+++  ER KTET++PT TSS
Sbjct: 231 SHCGSNQVPNPNDLDLSRVSTSGFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSS 290

Query: 161 SGGSGSSFNR--TSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRS 218
           SGGSGSS +R  T  QSTG N  KRK RD  +SECQSE A  ES  GNKTA RSGS RR+
Sbjct: 291 SGGSGSSMDRSRTIGQSTGGNGNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRT 350

Query: 219 RAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMG 278
           RAAEVHNLSERRRR+RINEKM+ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMG
Sbjct: 351 RAAEVHNLSERRRRERINEKMKALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMG 410

Query: 279 SGMAPLMFPGMQHYMSR--MGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMC 336
           SGMAP+MFPG+QHYMSR  MGMGM  P +PS+ NPM   RVP+VDQS+S+A   N+ +MC
Sbjct: 411 SGMAPMMFPGVQHYMSRVAMGMGMAQPSMPSIHNPMQLPRVPIVDQSVSVAPTPNQPMMC 470

Query: 337 QASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANSQPMNMFRF-GSPTMQNQIVSLPSS 395
           Q  + NP+NYQNQMQN    EQYAR MGFH MQ  SQP+N+FRF  S  +Q+Q  + P  
Sbjct: 471 QPQMFNPMNYQNQMQNPALQEQYARLMGFHHMQPTSQPINVFRFCPSAVLQSQPAAAPGP 530

Query: 396 SCVPFSGGAATDN 408
           +  P +GG+ T++
Sbjct: 531 ASGPTAGGSITND 543

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225446765|ref|XP_002278399.1| PREDICTED: transcription factor PIF5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143504|emb|CBI22065.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224082612|ref|XP_002306764.1| predicted protein [Populus trichocarpa] gi|222856213|gb|EEE93760.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356567480|ref|XP_003551947.1| PREDICTED: transcription factor PIF5-like [Glycine max] Back     alignment and taxonomy information
>gi|356553623|ref|XP_003545154.1| PREDICTED: transcription factor PIF5-like [Glycine max] Back     alignment and taxonomy information
>gi|356501423|ref|XP_003519524.1| PREDICTED: transcription factor PIF4-like [Glycine max] Back     alignment and taxonomy information
>gi|224066527|ref|XP_002302124.1| predicted protein [Populus trichocarpa] gi|222843850|gb|EEE81397.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356526934|ref|XP_003532070.1| PREDICTED: transcription factor PIF5-like [Glycine max] Back     alignment and taxonomy information
>gi|357113061|ref|XP_003558323.1| PREDICTED: transcription factor PIF5-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query467
TAIR|locus:2053733430 PIF4 "AT2G43010" [Arabidopsis 0.625 0.679 0.412 5.2e-49
TAIR|locus:2077680444 PIL6 "AT3G59060" [Arabidopsis 0.561 0.590 0.423 7.7e-48
UNIPROTKB|Q8GRJ1417 OJ1343_B12.103 "Transcription 0.578 0.647 0.374 9.2e-36
TAIR|locus:2061634478 PIL5 "phytochrome interacting 0.620 0.606 0.368 8.3e-35
TAIR|locus:2012345524 PIF3 "AT1G09530" [Arabidopsis 0.387 0.345 0.489 5.8e-34
UNIPROTKB|Q7FA23181 OSJNBa0058K23.6 "Os04g0618600 0.182 0.469 0.705 1.3e-27
UNIPROTKB|Q5NAE0565 P0498A12.33 "Putative BP-5 pro 0.252 0.208 0.578 1e-26
TAIR|locus:2115080373 SPT "AT4G36930" [Arabidopsis t 0.250 0.313 0.512 1.5e-24
UNIPROTKB|Q5VRS4315 OSJNBa0015I14.14 "Basic helix- 0.188 0.279 0.663 2.5e-24
TAIR|locus:4010713915544 AT4G28811 [Arabidopsis thalian 0.376 0.323 0.398 6.4e-24
TAIR|locus:2053733 PIF4 "AT2G43010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 141/342 (41%), Positives = 182/342 (53%)

Query:    77 PPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLND 136
             PP   + P   +     SG + + E+ + S+ TVG SHCGSN    DLD+S      ++ 
Sbjct:   129 PPPQVMPPPKFRLTNSSSG-IRETEMEQYSVTTVGPSHCGSNPSQNDLDVS------MSH 181

Query:   137 DVRKVISPSERGKTETIEPTVTXXXXXXXX-XFNRTSKQSTGDNSLKR-KSRDAVDSECQ 194
             D  K I        E + P  +          F +  K+      +   + R  ++    
Sbjct:   182 DRSKNIE-------EKLNPNASSSSGGSSGCSFGKDIKEMASGRCITTDRKRKRINHT-- 232

Query:   195 SEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDK 254
              E+       GNK+ QRSGS RRSRAAEVHNLSERRRRDRINE+M+ALQELIPHC+KTDK
Sbjct:   233 DESVSLSDAIGNKSNQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDK 292

Query:   255 ASMLDEAIEYLKSLQLQLQVMWMGSGMA------PLMFPGMQHYMSRXXXXXXXXXLPSV 308
             AS+LDEAI+YLKSLQLQLQVMWMGSGMA      P+MFPG+Q              +  +
Sbjct:   293 ASILDEAIDYLKSLQLQLQVMWMGSGMAAAAASAPMMFPGVQPQQ----------FIRQI 342

Query:   309 TNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPM 368
              +P+   R P++DQS   A   N  ++CQ    NPV  QNQ+ +  F        GF  M
Sbjct:   343 QSPVQLPRFPVMDQS---AIQNNPGLVCQ----NPV--QNQIISDRFARYIG---GFPHM 390

Query:   369 QANSQ--PMNMFRFGSPTMQNQIVSLPSSSCVPFSGGAATDN 408
             QA +Q  PM M RF SP  Q      PSS     + G+  D+
Sbjct:   391 QAATQMQPMEMLRFSSPAGQQS--QQPSSVPTKTTDGSRLDH 430
GO:0003677 "DNA binding" evidence=ISS;IDA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0010017 "red or far-red light signaling pathway" evidence=RCA;IMP
GO:0010161 "red light signaling pathway" evidence=IGI
GO:0009704 "de-etiolation" evidence=IMP
GO:0010600 "regulation of auxin biosynthetic process" evidence=IDA
GO:0010928 "regulation of auxin mediated signaling pathway" evidence=IDA
GO:0000165 "MAPK cascade" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0007623 "circadian rhythm" evidence=RCA
GO:0009617 "response to bacterium" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0030003 "cellular cation homeostasis" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0035304 "regulation of protein dephosphorylation" evidence=RCA
TAIR|locus:2077680 PIL6 "AT3G59060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8GRJ1 OJ1343_B12.103 "Transcription factor BHLH9-like protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2061634 PIL5 "phytochrome interacting factor 3-like 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012345 PIF3 "AT1G09530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q7FA23 OSJNBa0058K23.6 "Os04g0618600 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q5NAE0 P0498A12.33 "Putative BP-5 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2115080 SPT "AT4G36930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VRS4 OSJNBa0015I14.14 "Basic helix-loop-helix protein SPATULA-like" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:4010713915 AT4G28811 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query467
smart0035353 smart00353, HLH, helix loop helix domain 5e-17
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 9e-17
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 4e-15
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information 
 Score = 74.6 bits (184), Expect = 5e-17
 Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 225 NLSERRRRDRINEKMRALQELIPHCN---KTDKASMLDEAIEYLKSLQLQLQ 273
           N  ERRRR +INE    L+ L+P      K  KA +L  AIEY+KSLQ +LQ
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 467
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.42
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.39
smart0035353 HLH helix loop helix domain. 99.32
KOG1318411 consensus Helix loop helix transcription factor EB 99.22
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 99.0
KOG4304250 consensus Transcriptional repressors of the hairy/ 98.88
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 98.77
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 98.16
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 98.05
KOG3960284 consensus Myogenic helix-loop-helix transcription 97.8
PLN0321793 transcription factor ATBS1; Provisional 97.74
KOG0561373 consensus bHLH transcription factor [Transcription 97.62
KOG4029228 consensus Transcription factor HAND2/Transcription 97.36
KOG3910632 consensus Helix loop helix transcription factor [T 96.86
KOG3560 712 consensus Aryl-hydrocarbon receptor [Transcription 94.34
KOG3898254 consensus Transcription factor NeuroD and related 94.22
KOG4447173 consensus Transcription factor TWIST [Transcriptio 92.36
KOG3558 768 consensus Hypoxia-inducible factor 1/Neuronal PAS 89.73
KOG4395285 consensus Transcription factor Atonal, contains HT 85.0
KOG3559 598 consensus Transcriptional regulator SIM1 [Transcri 84.0
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information 
Probab=99.42  E-value=3.2e-13  Score=103.12  Aligned_cols=54  Identities=50%  Similarity=0.773  Sum_probs=50.1

Q ss_pred             hhhhcchhhHHHHHHHHHHHHHHHhhCCCC---CCccHhHHHHHHHHHHHHHHHHHH
Q 012246          220 AAEVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQ  273 (467)
Q Consensus       220 a~~~H~~~ERrRRdrINe~~~~Lr~LVP~~---~KldKAsIL~~AIeYIK~LQ~qvq  273 (467)
                      .+..|+..||+||++||+.|..|+.+||.+   .|+||++||+.||+||+.|+.+++
T Consensus         4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            345799999999999999999999999998   789999999999999999998863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>KOG3910 consensus Helix loop helix transcription factor [Transcription] Back     alignment and domain information
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] Back     alignment and domain information
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription] Back     alignment and domain information
>KOG4447 consensus Transcription factor TWIST [Transcription] Back     alignment and domain information
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] Back     alignment and domain information
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription] Back     alignment and domain information
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query467
4f3l_B 387 Crystal Structure Of The Heterodimeric Clock:bmal1 3e-04
4ati_A118 Mitf:m-Box Complex Length = 118 3e-04
>pdb|4F3L|B Chain B, Crystal Structure Of The Heterodimeric Clock:bmal1 Transcriptional Activator Complex Length = 387 Back     alignment and structure 
Iteration: 1

 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 216 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQ 269
           R   A E H+  E+RRRD++N  +  L  L+P CN    K DK ++L  A++++K+L+
Sbjct: 9   RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 66
>pdb|4ATI|A Chain A, Mitf:m-Box Complex Length = 118 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query467
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 2e-20
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 4e-16
1hlo_A80 Protein (transcription factor MAX); transcriptiona 4e-14
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 2e-13
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 6e-13
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 5e-09
1a0a_A63 BHLH, protein (phosphate system positive regulator 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 2e-06
4f3l_A361 Mclock, circadian locomoter output cycles protein 3e-06
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 6e-05
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
 Score = 84.4 bits (209), Expect = 2e-20
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 216 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN-KTDKASMLDEAIEYLKSLQLQLQV 274
            R      HN  E+R R  IN+K+  L++L+     K +K+++L +AI+Y++ LQ   Q 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 275 M 275
           +
Sbjct: 62  L 62
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387 Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361 Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Length = 76 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query467
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.61
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.59
4ati_A118 MITF, microphthalmia-associated transcription fact 99.57
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.56
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.56
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.55
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.47
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.47
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.43
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.38
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.32
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 99.11
4f3l_A 361 Mclock, circadian locomoter output cycles protein 99.08
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 99.06
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 99.0
4ath_A83 MITF, microphthalmia-associated transcription fact 98.69
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.62
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 98.13
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
Probab=99.61  E-value=4.6e-16  Score=128.06  Aligned_cols=59  Identities=32%  Similarity=0.467  Sum_probs=55.4

Q ss_pred             hhhhhcchhhHHHHHHHHHHHHHHHhhCCCC-CCccHhHHHHHHHHHHHHHHHHHHHHhc
Q 012246          219 RAAEVHNLSERRRRDRINEKMRALQELIPHC-NKTDKASMLDEAIEYLKSLQLQLQVMWM  277 (467)
Q Consensus       219 ra~~~H~~~ERrRRdrINe~~~~Lr~LVP~~-~KldKAsIL~~AIeYIK~LQ~qvq~L~~  277 (467)
                      ..+..|+++||+||++||++|.+|++|||.+ .|+||++||++||+||++||.+++.|..
T Consensus         5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~   64 (82)
T 1am9_A            5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ   64 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466899999999999999999999999998 7999999999999999999999999975
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 467
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 8e-16
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 6e-15
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 6e-15
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 8e-15
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 1e-14
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 1e-14
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 1e-14
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 2e-14
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (172), Expect = 8e-16
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 224 HNLSERRRRDRINEKMRALQELIPHCN--KTDKASMLDEAIEYLKSLQLQLQVM 275
           HN  ER+RRD I +   +L++ +P     K  +A +LD+A EY++ ++ +    
Sbjct: 6   HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTH 59
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query467
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.52
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.51
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.49
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.47
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.43
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.41
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.4
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.27
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.4e-15  Score=118.79  Aligned_cols=58  Identities=33%  Similarity=0.479  Sum_probs=54.0

Q ss_pred             hhhhcchhhHHHHHHHHHHHHHHHhhCCCCC-CccHhHHHHHHHHHHHHHHHHHHHHhc
Q 012246          220 AAEVHNLSERRRRDRINEKMRALQELIPHCN-KTDKASMLDEAIEYLKSLQLQLQVMWM  277 (467)
Q Consensus       220 a~~~H~~~ERrRRdrINe~~~~Lr~LVP~~~-KldKAsIL~~AIeYIK~LQ~qvq~L~~  277 (467)
                      .+..|+.+||+||++||+.|..|++|||.+. |++|++||.+||+||+.|+.+++.|..
T Consensus         6 kR~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~   64 (80)
T d1am9a_           6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ   64 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3568999999999999999999999999875 899999999999999999999998874
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure