Citrus Sinensis ID: 012274

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------
MQLLEPHLMKAKLAIQSITKFNSLSISSREQMAIEDCKELLDFSVSELAWSLDEMKRIRAGDKNVHYEGNLKAWLSAALSNQDTCLEGFEGTDRRLENFINGSLQQVTQLITNVLSLYTQLHSLPFKPPRINDTQSESPKFPKWMTEGDKGLMDMKPTRMHADAVVALDGTGHYRTITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTFRTATVAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAFFRCSVEGYQDTLYAHSLRQFYRECNIYGTIDFIFGNGAAVLQNCKIYSRVPLPLQKVTITAQGRKNPNQNTGFSIQDSYVVATQPTYLGRPWKQYSRTVYMNTYMSGLVQPRGWLEWYGNFALNTLWYGEYRNYGPGASLNGRVKWPGYHIIRDASAARYFTAGRFIDGMAWLPGTGIRFTAGLGT
cccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccccEEEEEccccccEEEEccccccccccccEEEEEEEEccEEEEccEEEEccccccccEEEEEEcccEEEEEccEEEccccccccccccEEEEccEEEEcccEEEcccEEEEEccEEEEEccccccccEEEcccccccccccEEEEEccEEEEccccccccccccccEEEEEEcccccccccccccccccccccccEEEEEEcccccccccccccccccccccccHHHHHccccccccccccccccccccccccccc
cHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHccccccccccEEEcccccccEccHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEcccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHcccHHHHccHHHccHHHcccccccccc
MQLLEPHLMKAKLAIQSITKFNSLSISSREQMAIEDCKELLDFSVSELAWSLDEMKRIragdknvhyEGNLKAWLSAALSNqdtclegfegTDRRLENFINGSLQQVTQLITNVLSLYTQlhslpfkpprindtqsespkfpkwmtegdkglmdmkptrmHADAVVALDGTGHYRTITEAInaapsyskrrYVIYVKKGVYRENVDMKKKKTNIMLVGDGIGAtvvtgnrnfmqgwTTFRTATVAvsgkgfiardmtfrntagpqnhqAVALRVdsdqsaffrcsvegyqDTLYAHSLRQFYRECNIYGTIDFIFGNGAAVLQnckiysrvplplqkvtitaqgrknpnqntgfsiqdsyvvatqptylgrpwkqysrTVYMNTYmsglvqprgwlewygnfalntlwygeyrnygpgaslngrvkwpgyhiirdasaarYFTAGrfidgmawlpgtgirftaglgt
MQLLEPHLMKAKLAIQSITKFNSLSISSREQMAIEDCKELLDFSVSELAWSLDEMKRIRAGDKNVHYEGNLKAWLSAALSNQDTCLEGFEGTDRRLENFINGSLQQVTQLITNVLSLYTQLHSLPFKPPrindtqsespkfpkWMTEGDKGLMDMKPTRMHADAVVALDGTGHYRTITeainaapsyskrryVIYVKkgvyrenvdmkkkktnimlvgDGIGATVVTGNRNFMQGWTTFRTATVAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAFFRCSVEGYQDTLYAHSLRQFYRECNIYGTIDFIFGNGAAVLQNCKIYSRVPLPLQKVTITaqgrknpnqntgfsiqDSYVVATQptylgrpwkqySRTVYMNTYMSGLVQPRGWLEWYGNFALNTLWYGEYRNYGPGASLNGRVKWPGYHIIRDASAARYFTAGRFIDGMAWLPGTGIRFTAGLGT
MQLLEPHLMKAKLAIQSITKFNSLSISSREQMAIEDCKELLDFSVSELAWSLDEMKRIRAGDKNVHYEGNLKAWLSAALSNQDTCLEGFEGTDRRLENFINGSLQQVTQLITNVLSLYTQLHSLPFKPPRINDTQSESPKFPKWMTEGDKGLMDMKPTRMHADAVVALDGTGHYRTITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTFRTATVAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAFFRCSVEGYQDTLYAHSLRQFYRECNIYGTIDFIFGNGAAVLQNCKIYSRVPLPLQKVTITAQGRKNPNQNTGFSIQDSYVVATQPTYLGRPWKQYSRTVYMNTYMSGLVQPRGWLEWYGNFALNTLWYGEYRNYGPGASLNGRVKWPGYHIIRDASAARYFTAGRFIDGMAWLPGTGIRFTAGLGT
***********KLAIQSITKFNSLSIS*REQMAIEDCKELLDFSVSELAWSLDEMKRIRAGDKNVHYEGNLKAWLSAALSNQDTCLEGFEGTDRRLENFINGSLQQVTQLITNVLSLYTQLHSLPF**********************************HADAVVALDGTGHYRTITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTFRTATVAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAFFRCSVEGYQDTLYAHSLRQFYRECNIYGTIDFIFGNGAAVLQNCKIYSRVPLPLQKVTITAQG******NTGFSIQDSYVVATQPTYLGRPWKQYSRTVYMNTYMSGLVQPRGWLEWYGNFALNTLWYGEYRNYGPGASLNGRVKWPGYHIIRDASAARYFTAGRFIDGMAWLPGTGIRFTA****
*Q*LEPHLMKAKLA*****************MAIEDCKELLDFSVSELAWSLDE***********HYEGNLKAWLSAALSNQDTCLEGFEGTD************QVTQLITNVLSLYTQL***********************MTE*********PTRMHADAVVALDGTGHYRTITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTFRTATVAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAFFRCSVEGYQDTLYAHSLRQFYRECNIYGTIDFIFGNGAAVLQNCKIYSRVPLPLQKVTITAQGRKNPNQNTGFSIQDSYVVATQPTYLGRPWKQYSRTVYMNTYMSGLVQPRGWLEWYGNFALNTLWYGEYRNYGPGASLNGRVKWPGYHIIRDASAARYFTAGRFIDGMAWLPGTGIRFTAGLG*
MQLLEPHLMKAKLAIQSITKFNSLSISSREQMAIEDCKELLDFSVSELAWSLDEMKRIRAGDKNVHYEGNLKAWLSAALSNQDTCLEGFEGTDRRLENFINGSLQQVTQLITNVLSLYTQLHSLPFKPPRINDTQSESPKFPKWMTEGDKGLMDMKPTRMHADAVVALDGTGHYRTITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTFRTATVAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAFFRCSVEGYQDTLYAHSLRQFYRECNIYGTIDFIFGNGAAVLQNCKIYSRVPLPLQKVTITAQGRKNPNQNTGFSIQDSYVVATQPTYLGRPWKQYSRTVYMNTYMSGLVQPRGWLEWYGNFALNTLWYGEYRNYGPGASLNGRVKWPGYHIIRDASAARYFTAGRFIDGMAWLPGTGIRFTAGLGT
MQLLEPHLMKAKLAIQSITKFNSLSISSREQMAIEDCKELLDFSVSELAWSLDEMKRIRAGDKNVHYEGNLKAWLSAALSNQDTCLEGFEGTDRRLENFINGSLQQVTQLITNVLSLYTQLHSLP**************KFPKWMTEGDKGLMDMKPTRMHADAVVALDGTGHYRTITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTFRTATVAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAFFRCSVEGYQDTLYAHSLRQFYRECNIYGTIDFIFGNGAAVLQNCKIYSRVPLPLQKVTITAQGRKNPNQNTGFSIQDSYVVATQPTYLGRPWKQYSRTVYMNTYMSGLVQPRGWLEWYGNFALNTLWYGEYRNYGPGASLNGRVKWPGYHIIRDASAARYFTAGRFIDGMAWLPGTGIRFT*****
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MQLLEPHLMKAKLAIQSITKFNSLSISSREQMAIEDCKELLDFSVSELAWSLDEMKRIRAGDKNVHYEGNLKAWLSAALSNQDTCLEGFEGTDRRLENFINGSLQQVTQLITNVLSLYTQLHSLPFKPPRINDTQSESPKFPKWMTEGDKGLMDMKPTRMHADAVVALDGTGHYRTITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTFRTATVAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAFFRCSVEGYQDTLYAHSLRQFYRECNIYGTIDFIFGNGAAVLQNCKIYSRVPLPLQKVTITAQGRKNPNQNTGFSIQDSYVVATQPTYLGRPWKQYSRTVYMNTYMSGLVQPRGWLEWYGNFALNTLWYGEYRNYGPGASLNGRVKWPGYHIIRDASAARYFTAGRFIDGMAWLPGTGIRFTAGLGT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query467 2.2.26 [Sep-21-2011]
Q9M9W7543 Putative pectinesterase/p yes no 0.967 0.832 0.721 0.0
Q9LXK7527 Probable pectinesterase/p no no 0.965 0.855 0.536 1e-144
Q43062522 Pectinesterase/pectineste N/A no 0.903 0.808 0.525 1e-140
Q9SMY7525 Probable pectinesterase/p no no 0.955 0.849 0.511 1e-136
Q9M3B0598 Probable pectinesterase/p no no 0.955 0.745 0.475 1e-126
Q9FK05587 Probable pectinesterase/p no no 0.972 0.773 0.456 1e-122
O04887510 Pectinesterase 2 OS=Citru no no 0.933 0.854 0.485 1e-120
Q96575550 Pectinesterase 2.2 OS=Sol N/A no 0.967 0.821 0.465 1e-119
P83948584 Pectinesterase 3 OS=Citru no no 0.961 0.768 0.448 1e-118
P09607550 Pectinesterase 2.1 OS=Sol N/A no 0.940 0.798 0.469 1e-116
>sp|Q9M9W7|PME22_ARATH Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1 Back     alignment and function desciption
 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/467 (72%), Positives = 386/467 (82%), Gaps = 15/467 (3%)

Query: 10  KAKLAIQSITKFNSLSISSREQMAIEDCKELLDFSVSELAWSLDEMKRIRAGDKNVHYE- 68
           KAKLA++ I     LSI SREQ+AIEDCKEL+ FSV+ELAWS+ EM ++  G      + 
Sbjct: 81  KAKLAMERIPTVMMLSIRSREQVAIEDCKELVGFSVTELAWSMLEMNKLHGGGGIDLDDG 140

Query: 69  --------GNLKAWLSAALSNQDTCLEGFEGTDRRLENFINGSLQQVTQLITNVLSLYTQ 120
                   GNLK WLSAA+SNQDTCLEGFEGT+R+ E  I GSL+QVTQL++NVL +YTQ
Sbjct: 141 SHDAAAAGGNLKTWLSAAMSNQDTCLEGFEGTERKYEELIKGSLRQVTQLVSNVLDMYTQ 200

Query: 121 LHSLPFKPPRINDTQSESPKFPKWMTEGDKGLM-DMKPTRMHADAVVALDGTGHYRTITE 179
           L++LPFK  R N++   SP+   W+TE D+ LM    P+ MH + VVA+DG G YRTI E
Sbjct: 201 LNALPFKASR-NESVIASPE---WLTETDESLMMRHDPSVMHPNTVVAIDGKGKYRTINE 256

Query: 180 AINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
           AIN AP++S +RYVIYVKKGVY+EN+D+KKKKTNIMLVGDGIG T++TG+RNFMQG TTF
Sbjct: 257 AINEAPNHSTKRYVIYVKKGVYKENIDLKKKKTNIMLVGDGIGQTIITGDRNFMQGLTTF 316

Query: 240 RTATVAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAFFRCSVEGYQDTLYAHSLR 299
           RTATVAVSG+GFIA+D+TFRNTAGPQN QAVALRVDSDQSAF+RCSVEGYQDTLYAHSLR
Sbjct: 317 RTATVAVSGRGFIAKDITFRNTAGPQNRQAVALRVDSDQSAFYRCSVEGYQDTLYAHSLR 376

Query: 300 QFYRECNIYGTIDFIFGNGAAVLQNCKIYSRVPLPLQKVTITAQGRKNPNQNTGFSIQDS 359
           QFYR+C IYGTIDFIFGNGAAVLQNCKIY+RVPLPLQKVTITAQGRK+PNQNTGF IQ+S
Sbjct: 377 QFYRDCEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPNQNTGFVIQNS 436

Query: 360 YVVATQPTYLGRPWKQYSRTVYMNTYMSGLVQPRGWLEWYGNFALNTLWYGEYRNYGPGA 419
           YV+ATQPTYLGRPWK YSRTVYMNTYMS LVQPRGWLEW+GNFAL+TLWYGEY N GPG 
Sbjct: 437 YVLATQPTYLGRPWKLYSRTVYMNTYMSQLVQPRGWLEWFGNFALDTLWYGEYNNIGPGW 496

Query: 420 SLNGRVKWPGYHIIRDASAARYFTAGRFIDGMAWLPGTGIRFTAGLG 466
             +GRVKWPGYHI+ D   A  FT G FIDG  WLP TG+ FTAGL 
Sbjct: 497 RSSGRVKWPGYHIM-DKRTALSFTVGSFIDGRRWLPATGVTFTAGLA 542
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9LXK7|PME32_ARATH Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1 Back     alignment and function description
>sp|Q43062|PME_PRUPE Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1 Back     alignment and function description
>sp|Q9SMY7|PME44_ARATH Probable pectinesterase/pectinesterase inhibitor 44 OS=Arabidopsis thaliana GN=PME44 PE=2 SV=2 Back     alignment and function description
>sp|Q9M3B0|PME34_ARATH Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1 Back     alignment and function description
>sp|Q9FK05|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1 Back     alignment and function description
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function description
>sp|Q96575|PME22_SOLLC Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1 Back     alignment and function description
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function description
>sp|P09607|PME21_SOLLC Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query467
255542798535 Pectinesterase PPE8B precursor, putative 0.989 0.863 0.805 0.0
224123850502 predicted protein [Populus trichocarpa] 0.989 0.920 0.815 0.0
356572956544 PREDICTED: putative pectinesterase/pecti 0.989 0.849 0.791 0.0
224123034539 predicted protein [Populus trichocarpa] 0.991 0.858 0.809 0.0
359487645 1700 PREDICTED: uncharacterized protein LOC10 0.922 0.253 0.787 0.0
296089717 571 unnamed protein product [Vitis vinifera] 0.989 0.809 0.787 0.0
357511819544 Pectinesterase [Medicago truncatula] gi| 0.967 0.830 0.785 0.0
449435635543 PREDICTED: putative pectinesterase/pecti 0.974 0.837 0.768 0.0
449485670543 PREDICTED: putative pectinesterase/pecti 0.974 0.837 0.766 0.0
15230020543 pectinesterase 22 [Arabidopsis thaliana] 0.967 0.832 0.721 0.0
>gi|255542798|ref|XP_002512462.1| Pectinesterase PPE8B precursor, putative [Ricinus communis] gi|223548423|gb|EEF49914.1| Pectinesterase PPE8B precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/462 (80%), Positives = 426/462 (92%)

Query: 4   LEPHLMKAKLAIQSITKFNSLSISSREQMAIEDCKELLDFSVSELAWSLDEMKRIRAGDK 63
           ++  L +A+LAI +ITKFN+LS+S REQ+AIEDCKELLDFSVSELAWSL EM++IRAGD 
Sbjct: 72  MQASLNEARLAIDTITKFNALSVSYREQLAIEDCKELLDFSVSELAWSLAEMEKIRAGDN 131

Query: 64  NVHYEGNLKAWLSAALSNQDTCLEGFEGTDRRLENFINGSLQQVTQLITNVLSLYTQLHS 123
           NV YEGNLKAWLSAALSNQDTCLEGFEGTDR LENF+ GSL+QVTQLI NVL+LYTQLHS
Sbjct: 132 NVAYEGNLKAWLSAALSNQDTCLEGFEGTDRHLENFVKGSLKQVTQLIGNVLALYTQLHS 191

Query: 124 LPFKPPRINDTQSESPKFPKWMTEGDKGLMDMKPTRMHADAVVALDGTGHYRTITEAINA 183
           +PFKP R     + SP+FP+WMTEGD+ L+      +H DA+V+LDG+GHY TIT+A+N 
Sbjct: 192 MPFKPSRNGTITNTSPEFPQWMTEGDQELLKFGTLGVHVDAIVSLDGSGHYNTITQALNE 251

Query: 184 APSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTFRTAT 243
           AP++S RRY+IYVK+G+YREN+DMKKKKTNIMLVGDGIG TVVTGNRNFMQGWTTFRTAT
Sbjct: 252 APNHSNRRYIIYVKQGIYRENIDMKKKKTNIMLVGDGIGKTVVTGNRNFMQGWTTFRTAT 311

Query: 244 VAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAFFRCSVEGYQDTLYAHSLRQFYR 303
           VAVSG+GFIARDMTFRNTAGP+NHQAVALRVDSDQSAF+RCS+EGYQDTLYAHSLRQFYR
Sbjct: 312 VAVSGRGFIARDMTFRNTAGPENHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSLRQFYR 371

Query: 304 ECNIYGTIDFIFGNGAAVLQNCKIYSRVPLPLQKVTITAQGRKNPNQNTGFSIQDSYVVA 363
           ECNIYGTID+IFGNGAAV Q CKIY+RVPLPLQKVTITAQGRKNP+Q+TGFSIQDSY++A
Sbjct: 372 ECNIYGTIDYIFGNGAAVFQKCKIYTRVPLPLQKVTITAQGRKNPHQSTGFSIQDSYILA 431

Query: 364 TQPTYLGRPWKQYSRTVYMNTYMSGLVQPRGWLEWYGNFALNTLWYGEYRNYGPGASLNG 423
           TQPTYLGRPWKQ+SRTV++NTY+SGLVQ RGWLEWYGNFAL TLWYGEY+NYGPGASL+G
Sbjct: 432 TQPTYLGRPWKQFSRTVFINTYISGLVQARGWLEWYGNFALGTLWYGEYKNYGPGASLSG 491

Query: 424 RVKWPGYHIIRDASAARYFTAGRFIDGMAWLPGTGIRFTAGL 465
           RVKWPGYHIIRDA+ A++FTAG+FIDGM+WLP TG++FTAGL
Sbjct: 492 RVKWPGYHIIRDAATAKFFTAGQFIDGMSWLPSTGVKFTAGL 533

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224123850|ref|XP_002330224.1| predicted protein [Populus trichocarpa] gi|222871680|gb|EEF08811.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356572956|ref|XP_003554631.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 22-like [Glycine max] Back     alignment and taxonomy information
>gi|224123034|ref|XP_002318977.1| predicted protein [Populus trichocarpa] gi|222857353|gb|EEE94900.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359487645|ref|XP_002279164.2| PREDICTED: uncharacterized protein LOC100249393 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296089717|emb|CBI39536.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357511819|ref|XP_003626198.1| Pectinesterase [Medicago truncatula] gi|355501213|gb|AES82416.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449435635|ref|XP_004135600.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 22-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449485670|ref|XP_004157240.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 22-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15230020|ref|NP_187213.1| pectinesterase 22 [Arabidopsis thaliana] gi|75336123|sp|Q9M9W7.1|PME22_ARATH RecName: Full=Putative pectinesterase/pectinesterase inhibitor 22; Includes: RecName: Full=Pectinesterase inhibitor 22; AltName: Full=Pectin methylesterase inhibitor 22; Includes: RecName: Full=Pectinesterase 22; Short=PE 22; AltName: Full=Pectin methylesterase 22; Short=AtPME22; Flags: Precursor gi|6714448|gb|AAF26135.1|AC011620_11 putative pectinesterase [Arabidopsis thaliana] gi|332640746|gb|AEE74267.1| pectinesterase 22 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query467
TAIR|locus:2078047543 AT3G05620 [Arabidopsis thalian 0.963 0.828 0.728 3e-181
TAIR|locus:2084751527 AT3G43270 [Arabidopsis thalian 0.959 0.850 0.543 7.9e-133
TAIR|locus:2125949525 PME44 "pectin methylesterase 4 0.955 0.849 0.511 1.1e-124
TAIR|locus:2082951598 AT3G49220 [Arabidopsis thalian 0.955 0.745 0.475 2.8e-114
TAIR|locus:2154277587 PMEPCRF "pectin methylesterase 0.972 0.773 0.458 3.3e-111
TAIR|locus:2201230554 AT1G23200 [Arabidopsis thalian 0.698 0.588 0.582 1.5e-108
TAIR|locus:2133219518 AT4G02320 [Arabidopsis thalian 0.931 0.839 0.462 2.5e-104
TAIR|locus:2197056587 PME2 "pectin methylesterase 2" 0.700 0.557 0.541 4e-104
TAIR|locus:2200076557 PMEPCRA "methylesterase PCR A" 0.970 0.813 0.439 3.7e-103
TAIR|locus:2050941511 AT2G45220 [Arabidopsis thalian 0.826 0.755 0.507 4.2e-102
TAIR|locus:2078047 AT3G05620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1759 (624.3 bits), Expect = 3.0e-181, P = 3.0e-181
 Identities = 340/467 (72%), Positives = 389/467 (83%)

Query:    10 KAKLAIQSITKFNSLSISSREQMAIEDCKELLDFSVSELAWSLDEMKRIRAG-----DKN 64
             KAKLA++ I     LSI SREQ+AIEDCKEL+ FSV+ELAWS+ EM ++  G     D  
Sbjct:    81 KAKLAMERIPTVMMLSIRSREQVAIEDCKELVGFSVTELAWSMLEMNKLHGGGGIDLDDG 140

Query:    65 VHYE----GNLKAWLSAALSNQDTCLEGFEGTDRRLENFINGSLQQVTQLITNVLSLYTQ 120
              H      GNLK WLSAA+SNQDTCLEGFEGT+R+ E  I GSL+QVTQL++NVL +YTQ
Sbjct:   141 SHDAAAAGGNLKTWLSAAMSNQDTCLEGFEGTERKYEELIKGSLRQVTQLVSNVLDMYTQ 200

Query:   121 LHSLPFKPPRINDTQSESPKFPKWMTEGDKGLMDMK--PTRMHADAVVALDGTGHYRTIT 178
             L++LPFK  R N++   SP+   W+TE D+ LM M+  P+ MH + VVA+DG G YRTI 
Sbjct:   201 LNALPFKASR-NESVIASPE---WLTETDESLM-MRHDPSVMHPNTVVAIDGKGKYRTIN 255

Query:   179 EAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTT 238
             EAIN AP++S +RYVIYVKKGVY+EN+D+KKKKTNIMLVGDGIG T++TG+RNFMQG TT
Sbjct:   256 EAINEAPNHSTKRYVIYVKKGVYKENIDLKKKKTNIMLVGDGIGQTIITGDRNFMQGLTT 315

Query:   239 FRTATVAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAFFRCSVEGYQDTLYAHSL 298
             FRTATVAVSG+GFIA+D+TFRNTAGPQN QAVALRVDSDQSAF+RCSVEGYQDTLYAHSL
Sbjct:   316 FRTATVAVSGRGFIAKDITFRNTAGPQNRQAVALRVDSDQSAFYRCSVEGYQDTLYAHSL 375

Query:   299 RQFYRECNIYGTIDFIFGNGAAVLQNCKIYSRVPLPLQKVTITAQGRKNPNQNTGFSIQD 358
             RQFYR+C IYGTIDFIFGNGAAVLQNCKIY+RVPLPLQKVTITAQGRK+PNQNTGF IQ+
Sbjct:   376 RQFYRDCEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPNQNTGFVIQN 435

Query:   359 SYVVATQPTYLGRPWKQYSRTVYMNTYMSGLVQPRGWLEWYGNFALNTLWYGEYRNYGPG 418
             SYV+ATQPTYLGRPWK YSRTVYMNTYMS LVQPRGWLEW+GNFAL+TLWYGEY N GPG
Sbjct:   436 SYVLATQPTYLGRPWKLYSRTVYMNTYMSQLVQPRGWLEWFGNFALDTLWYGEYNNIGPG 495

Query:   419 ASLNGRVKWPGYHIIRDASAARYFTAGRFIDGMAWLPGTGIRFTAGL 465
                +GRVKWPGYHI+ D   A  FT G FIDG  WLP TG+ FTAGL
Sbjct:   496 WRSSGRVKWPGYHIM-DKRTALSFTVGSFIDGRRWLPATGVTFTAGL 541
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2084751 AT3G43270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125949 PME44 "pectin methylesterase 44" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154277 PMEPCRF "pectin methylesterase PCR fragment F" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201230 AT1G23200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133219 AT4G02320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197056 PME2 "pectin methylesterase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200076 PMEPCRA "methylesterase PCR A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050941 AT2G45220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q43062PME_PRUPE3, ., 1, ., 1, ., 1, 10.52580.90360.8084N/Ano
Q9M9W7PME22_ARATH3, ., 1, ., 1, ., 1, 10.72160.96780.8324yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.914
3rd Layer3.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query467
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 0.0
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 0.0
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 0.0
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-180
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-174
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-165
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-164
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-159
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-155
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-152
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-152
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-149
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-146
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-143
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-143
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-140
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-132
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-124
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-120
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-118
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-113
PLN02197588 PLN02197, PLN02197, pectinesterase 1e-84
PLN02432293 PLN02432, PLN02432, putative pectinesterase 7e-73
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 3e-69
PLN02773317 PLN02773, PLN02773, pectinesterase 1e-64
PLN02304379 PLN02304, PLN02304, probable pectinesterase 2e-61
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 4e-60
PLN02497331 PLN02497, PLN02497, probable pectinesterase 4e-58
PLN02634359 PLN02634, PLN02634, probable pectinesterase 3e-56
PLN02671359 PLN02671, PLN02671, pectinesterase 9e-56
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 1e-52
PLN02176340 PLN02176, PLN02176, putative pectinesterase 1e-39
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 2e-35
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 4e-22
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 1e-20
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 5e-20
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 2e-08
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  921 bits (2382), Expect = 0.0
 Identities = 381/463 (82%), Positives = 420/463 (90%)

Query: 4   LEPHLMKAKLAIQSITKFNSLSISSREQMAIEDCKELLDFSVSELAWSLDEMKRIRAGDK 63
           L+  L +A+LAI  ITKFN+LSIS REQ+AIEDCKELLDFSVSELAWSL EM +IRAG  
Sbjct: 74  LKATLDEARLAIDMITKFNALSISYREQVAIEDCKELLDFSVSELAWSLLEMNKIRAGHD 133

Query: 64  NVHYEGNLKAWLSAALSNQDTCLEGFEGTDRRLENFINGSLQQVTQLITNVLSLYTQLHS 123
           NV YEGNLKAWLSAALSNQDTCLEGFEGTDR LENFI GSL+QVTQLI+NVL++YTQLHS
Sbjct: 134 NVAYEGNLKAWLSAALSNQDTCLEGFEGTDRHLENFIKGSLKQVTQLISNVLAMYTQLHS 193

Query: 124 LPFKPPRINDTQSESPKFPKWMTEGDKGLMDMKPTRMHADAVVALDGTGHYRTITEAINA 183
           LPFKP R     + S KFP+WMTEGD+ L+   P  MH D +VALDG+GHYRTITEAIN 
Sbjct: 194 LPFKPSRNETETAPSSKFPEWMTEGDQELLKHDPLGMHVDTIVALDGSGHYRTITEAINE 253

Query: 184 APSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTFRTAT 243
           AP++S RRY+IYVKKGVY+EN+DMKKKKTNIMLVGDGIG TVVTGNRNFMQGWTTFRTAT
Sbjct: 254 APNHSNRRYIIYVKKGVYKENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTAT 313

Query: 244 VAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAFFRCSVEGYQDTLYAHSLRQFYR 303
           VAVSG+GFIARD+TFRNTAGPQNHQAVALRVDSDQSAF+RCS+EGYQDTLYAHSLRQFYR
Sbjct: 314 VAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSLRQFYR 373

Query: 304 ECNIYGTIDFIFGNGAAVLQNCKIYSRVPLPLQKVTITAQGRKNPNQNTGFSIQDSYVVA 363
           EC IYGTIDFIFGNGAAVLQNCKIY+RVPLPLQKVTITAQGRK+P+Q+TGFSIQDSYV+A
Sbjct: 374 ECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLA 433

Query: 364 TQPTYLGRPWKQYSRTVYMNTYMSGLVQPRGWLEWYGNFALNTLWYGEYRNYGPGASLNG 423
           TQPTYLGRPWKQYSRTV+MNTYMS LVQPRGWLEWYGNFAL TLWYGEYRNYGPGA L+G
Sbjct: 434 TQPTYLGRPWKQYSRTVFMNTYMSQLVQPRGWLEWYGNFALGTLWYGEYRNYGPGALLSG 493

Query: 424 RVKWPGYHIIRDASAARYFTAGRFIDGMAWLPGTGIRFTAGLG 466
           RVKWPGYHII+D   A++FT G+FIDG +WLP TG++FTAGL 
Sbjct: 494 RVKWPGYHIIQDKRTAKFFTVGQFIDGRSWLPSTGVKFTAGLA 536

Length = 537
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 467
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02197588 pectinesterase 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671359 pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02176340 putative pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02634359 probable pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.83
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.78
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.76
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.44
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.77
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.72
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.49
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.15
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 97.88
KOG1777 625 consensus Putative Zn-finger protein [General func 97.42
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.0
PLN03003456 Probable polygalacturonase At3g15720 96.82
PLN02793443 Probable polygalacturonase 96.7
PLN02218431 polygalacturonase ADPG 96.64
PLN02682369 pectinesterase family protein 96.58
PLN02773317 pectinesterase 96.39
PRK10531422 acyl-CoA thioesterase; Provisional 96.29
PLN02480343 Probable pectinesterase 96.22
PLN03010409 polygalacturonase 96.09
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.08
PLN02497331 probable pectinesterase 96.02
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.84
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 95.74
PLN02665366 pectinesterase family protein 95.6
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.39
smart00656190 Amb_all Amb_all domain. 95.32
PLN02155394 polygalacturonase 95.24
PLN02671359 pectinesterase 95.14
PLN02634359 probable pectinesterase 95.01
PLN02432293 putative pectinesterase 95.01
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.54
PLN02304379 probable pectinesterase 94.44
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 94.37
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 94.28
PLN02916502 pectinesterase family protein 94.17
PLN02176340 putative pectinesterase 94.09
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 94.08
PLN02197588 pectinesterase 94.01
PLN02416541 probable pectinesterase/pectinesterase inhibitor 93.82
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 93.7
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 93.49
PLN02201520 probable pectinesterase/pectinesterase inhibitor 93.36
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 93.26
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 93.21
PLN02506537 putative pectinesterase/pectinesterase inhibitor 92.92
PLN02488509 probable pectinesterase/pectinesterase inhibitor 92.85
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 92.69
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 92.68
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 92.67
PLN02314586 pectinesterase 92.59
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 91.93
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 91.9
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 91.78
PLN02484587 probable pectinesterase/pectinesterase inhibitor 91.54
PLN02468565 putative pectinesterase/pectinesterase inhibitor 91.23
PLN02313587 Pectinesterase/pectinesterase inhibitor 91.19
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 91.12
PLN02188404 polygalacturonase/glycoside hydrolase family prote 90.96
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 90.66
PLN02301548 pectinesterase/pectinesterase inhibitor 90.17
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 89.9
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 89.41
smart00722146 CASH Domain present in carbohydrate binding protei 83.07
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 82.84
KOG173397 consensus Mitochondrial import inner membrane tran 80.6
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=1.3e-128  Score=1026.25  Aligned_cols=465  Identities=82%  Similarity=1.333  Sum_probs=427.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccchhhHHHHHHHHhhc
Q 012274            2 QLLEPHLMKAKLAIQSITKFNSLSISSREQMAIEDCKELLDFSVSELAWSLDEMKRIRAGDKNVHYEGNLKAWLSAALSN   81 (467)
Q Consensus         2 ~sl~vsl~~a~~~~~~i~~l~~~~~~~~~~~aL~DC~el~~daid~L~~s~~~l~~~~~~~~~~~~~~dv~TwLSAAlT~   81 (467)
                      ++|++++++++++...++.+.....++++++||+||+|+|+|++++|++|+.+|...........+++|+||||||||||
T Consensus        72 aAL~vtl~~a~~a~~~v~~l~~~~~~~r~~~Al~DC~EllddSvd~L~~Sl~el~~~~~~~~~~~~~~Dv~TWLSAALT~  151 (537)
T PLN02506         72 AALKATLDEARLAIDMITKFNALSISYREQVAIEDCKELLDFSVSELAWSLLEMNKIRAGHDNVAYEGNLKAWLSAALSN  151 (537)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHhHHHHHhcc
Confidence            47999999999999999988665678999999999999999999999999999975421111013479999999999999


Q ss_pred             hhhhhhccCCCCchhhhhHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCCcccCccCccCCCCCCCc
Q 012274           82 QDTCLEGFEGTDRRLENFINGSLQQVTQLITNVLSLYTQLHSLPFKPPRINDTQSESPKFPKWMTEGDKGLMDMKPTRMH  161 (467)
Q Consensus        82 ~~TC~DGf~e~~~~~~~~l~~~~~~~~~l~SnALAi~~~l~~~~~~~~~~~~~~~~~~~~p~w~~~~~~~~l~~~~~~~~  161 (467)
                      ++||+|||++.++.+++.|+..+.++.+|+||||||++.+........+.+......++||+|++..|||||+..+..++
T Consensus       152 q~TC~DGF~~~~~~~k~~v~~~l~nv~~LtSNALAiv~~l~~l~~~~~~~~~~~~~~~~~p~w~~~~~r~ll~~~~~~~~  231 (537)
T PLN02506        152 QDTCLEGFEGTDRHLENFIKGSLKQVTQLISNVLAMYTQLHSLPFKPSRNETETAPSSKFPEWMTEGDQELLKHDPLGMH  231 (537)
T ss_pred             HhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCccccccccCCCCCCCcCccchhhhcCCcccCC
Confidence            99999999987777889999999999999999999999886532222222222234467999999999999987655678


Q ss_pred             ccEEEcCCCCCCCccHHHHHHHCCCCCcceEEEEEeCceEEEEEEecccCCCeEEeccCCCcceEecccccccCccccce
Q 012274          162 ADAVVALDGTGHYRTITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTFRT  241 (467)
Q Consensus       162 ~~i~V~~dg~g~f~TIq~Ai~aap~~~~~~~~I~I~~G~Y~E~v~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~s  241 (467)
                      .+++|++||+|+|+|||+||+++|.++.+|++|+|+||+|+|+|.|+++|++|+|+|+|.++|+|+++.+..+|++|+++
T Consensus       232 ~~~~Va~dGsG~f~TIq~Av~a~p~~~~~r~vI~Vk~GvY~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~s  311 (537)
T PLN02506        232 VDTIVALDGSGHYRTITEAINEAPNHSNRRYIIYVKKGVYKENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRT  311 (537)
T ss_pred             ceEEECCCCCCCccCHHHHHHhchhcCCCcEEEEEeCCeeeEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccc
Confidence            89999999999999999999999999889999999999999999999999999999999999999999988888999999


Q ss_pred             eeEEEEcCcEEEEEeEEEeCCCCCCCceEEEEecCcceEEEEeeEEeeceeeeecccceEeeecEEEccceeEecccceE
Q 012274          242 ATVAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAFFRCSVEGYQDTLYAHSLRQFYRECNIYGTIDFIFGNGAAV  321 (467)
Q Consensus       242 at~~v~~~~f~~~~lti~N~~g~~~~qAvAl~~~~d~~~~~~C~~~g~QDTL~~~~~r~~~~~c~I~G~vDfIfG~~~a~  321 (467)
                      |||.|.+++|+++||+|+|++|+.++|||||++.+|+++||||+|+|||||||++.+||||++|+|+|+||||||+|+++
T Consensus       312 aT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~rqyy~~C~I~GtVDFIFG~a~av  391 (537)
T PLN02506        312 ATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAV  391 (537)
T ss_pred             eEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecCCceEEEeeEEecccceEccCceeE
Confidence            99999999999999999999999899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeEEEEecCCCCCceEEEecCCCCCCCCceEEEECCEEccCCceeeeccCCCcceEEEEecCCCCccccCCCcCCCCC
Q 012274          322 LQNCKIYSRVPLPLQKVTITAQGRKNPNQNTGFSIQDSYVVATQPTYLGRPWKQYSRTVYMNTYMSGLVQPRGWLEWYGN  401 (467)
Q Consensus       322 f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~yLGRpW~~~s~~v~~~s~~~~~I~p~Gw~~w~~~  401 (467)
                      ||+|+|+++.+.+++.++||||+|+++++++||||++|+|++.+++||||||++|+|||||+|+|+++|+|+||.+|++.
T Consensus       392 fq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~yLGRPW~~~sr~v~~~t~l~~~I~p~GW~~w~~~  471 (537)
T PLN02506        392 LQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLATQPTYLGRPWKQYSRTVFMNTYMSQLVQPRGWLEWYGN  471 (537)
T ss_pred             EeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEccCCceEEecCCCCCceEEEEecCCCCeecCcCcCCCCCC
Confidence            99999999987667789999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCccccEEEEeeccCCCCCCCCcccCCCccccCCHHHHhccchhccccCCCCCCCCCCcccCCCC
Q 012274          402 FALNTLWYGEYRNYGPGASLNGRVKWPGYHIIRDASAARYFTAGRFIDGMAWLPGTGIRFTAGLG  466 (467)
Q Consensus       402 ~~~~~~~f~Ey~n~GpGa~~~~R~~w~~~~~l~~~~~a~~~t~~~~~~g~~W~p~~~~~~~~~~~  466 (467)
                      +.+++++|+||+|+|||+++++||+|+++|+|++++||.+|++.+||+|+.|+|.++|||..||-
T Consensus       472 ~~~~t~~y~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~~a~~ft~~~fi~g~~Wl~~~~~p~~~gl~  536 (537)
T PLN02506        472 FALGTLWYGEYRNYGPGALLSGRVKWPGYHIIQDKRTAKFFTVGQFIDGRSWLPSTGVKFTAGLA  536 (537)
T ss_pred             CCCCceEEEEeccccCCCCcCCCcccccccccCCHHHHHhhhHHhccCCCcccCCCCCCcccCCC
Confidence            88899999999999999999999999999999888899999999999999999999999999984

>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query467
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 1e-100
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 1e-100
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 1e-25
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 1e-25
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 1e-24
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 2e-19
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  363 bits (931), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/313 (54%), Positives = 221/313 (70%), Gaps = 9/313 (2%)
Query: 162 ADAVVALDGTGHYRTITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGI 221
           A+AVVA DGTG Y+T+ EA+ AAP  SK RYVIYVK+G Y+ENV++   K N+M+VGDG+
Sbjct: 3   ANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGM 62
Query: 222 GATVVTGNRNFMQGWTTFRTATVAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAF 281
            AT +TG+ N + G TTFR+AT+A  G+GFI +D+  +NTAGP   QAVALRV +D S  
Sbjct: 63  YATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVI 122
Query: 282 FRCSVEGYQDTLYAHSLRQFYRECNIYGTIDFIFGNGAAVLQNCKIYSRVPLPLQKVTIT 341
            RC ++ YQDTLYAHS RQFYR+  + GT+DFIFGN A V Q C++ +R P   Q+  +T
Sbjct: 123 NRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVT 182
Query: 342 AQGRKNPNQNTGFSIQDSYVVATQ---------PTYLGRPWKQYSRTVYMNTYMSGLVQP 392
           AQGR +PNQ TG SIQ   ++A+          PTYLGRPWK+YSRTV M +Y+ GL+ P
Sbjct: 183 AQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINP 242
Query: 393 RGWLEWYGNFALNTLWYGEYRNYGPGASLNGRVKWPGYHIIRDASAARYFTAGRFIDGMA 452
            GW EW G+FAL TL+YGE+ N GPGA  + RVKWPGYH+I D + A  FT  + I G +
Sbjct: 243 AGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGS 302
Query: 453 WLPGTGIRFTAGL 465
           WL  TG+ +  GL
Sbjct: 303 WLRSTGVAYVDGL 315
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query467
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-173
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-171
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-132
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-128
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-111
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 4e-18
1x91_A153 Invertase/pectin methylesterase inhibitor family p 4e-18
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  487 bits (1255), Expect = e-173
 Identities = 172/313 (54%), Positives = 221/313 (70%), Gaps = 9/313 (2%)

Query: 162 ADAVVALDGTGHYRTITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGI 221
           A+AVVA DGTG Y+T+ EA+ AAP  SK RYVIYVK+G Y+ENV++   K N+M+VGDG+
Sbjct: 3   ANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGM 62

Query: 222 GATVVTGNRNFMQGWTTFRTATVAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAF 281
            AT +TG+ N + G TTFR+AT+A  G+GFI +D+  +NTAGP   QAVALRV +D S  
Sbjct: 63  YATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVI 122

Query: 282 FRCSVEGYQDTLYAHSLRQFYRECNIYGTIDFIFGNGAAVLQNCKIYSRVPLPLQKVTIT 341
            RC ++ YQDTLYAHS RQFYR+  + GT+DFIFGN A V Q C++ +R P   Q+  +T
Sbjct: 123 NRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVT 182

Query: 342 AQGRKNPNQNTGFSIQDSYVVATQ---------PTYLGRPWKQYSRTVYMNTYMSGLVQP 392
           AQGR +PNQ TG SIQ   ++A+          PTYLGRPWK+YSRTV M +Y+ GL+ P
Sbjct: 183 AQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINP 242

Query: 393 RGWLEWYGNFALNTLWYGEYRNYGPGASLNGRVKWPGYHIIRDASAARYFTAGRFIDGMA 452
            GW EW G+FAL TL+YGE+ N GPGA  + RVKWPGYH+I D + A  FT  + I G +
Sbjct: 243 AGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGS 302

Query: 453 WLPGTGIRFTAGL 465
           WL  TG+ +  GL
Sbjct: 303 WLRSTGVAYVDGL 315
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query467
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.89
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.88
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.85
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.68
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.47
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.82
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.25
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.92
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.72
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.68
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.59
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.53
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.46
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.45
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.41
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.3
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.25
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.18
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.18
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.14
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.14
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.09
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.67
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.64
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.47
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.25
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.22
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.22
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.21
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.14
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.01
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.8
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.62
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.23
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.08
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.05
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 94.97
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 93.96
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 93.85
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 93.51
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 90.12
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 89.47
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 89.09
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 88.62
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 86.71
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 86.01
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 85.96
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 84.93
2inu_A410 Insulin fructotransferase; right-handed parallel b 84.3
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 84.24
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 83.39
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=1.1e-92  Score=713.38  Aligned_cols=306  Identities=56%  Similarity=0.988  Sum_probs=294.0

Q ss_pred             cccEEEcCCCCCCCccHHHHHHHCCCCCcceEEEEEeCceEEEEEEecccCCCeEEeccCCCcceEecccccccCccccc
Q 012274          161 HADAVVALDGTGHYRTITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTFR  240 (467)
Q Consensus       161 ~~~i~V~~dg~g~f~TIq~Ai~aap~~~~~~~~I~I~~G~Y~E~v~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~  240 (467)
                      +.+++|++||+|+|+|||+||++||+++++|++|+|+||+|+|+|.|++.|++|||+|+++++|+|+++.+..+|.+|+.
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~   81 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFR   81 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGG
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccc
Confidence            46799999999999999999999999999999999999999999999998999999999999999999988778889999


Q ss_pred             eeeEEEEcCcEEEEEeEEEeCCCCCCCceEEEEecCcceEEEEeeEEeeceeeeecccceEeeecEEEccceeEecccce
Q 012274          241 TATVAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAFFRCSVEGYQDTLYAHSLRQFYRECNIYGTIDFIFGNGAA  320 (467)
Q Consensus       241 sat~~v~~~~f~~~~lti~N~~g~~~~qAvAl~~~~d~~~~~~C~~~g~QDTL~~~~~r~~~~~c~I~G~vDfIfG~~~a  320 (467)
                      ++||.|.+++|+++||||+|++++.++||+||++.+|++.|+||+|+|+|||||++++||||++|+|+|+||||||++++
T Consensus        82 satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~a  161 (317)
T 1xg2_A           82 SATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAV  161 (317)
T ss_dssp             GCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCEE
T ss_pred             eeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCceE
Confidence            99999999999999999999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeEEEEecCCCCCceEEEecCCCCCCCCceEEEECCEEccCC---------ceeeeccCCCcceEEEEecCCCCccc
Q 012274          321 VLQNCKIYSRVPLPLQKVTITAQGRKNPNQNTGFSIQDSYVVATQ---------PTYLGRPWKQYSRTVYMNTYMSGLVQ  391 (467)
Q Consensus       321 ~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~---------~~yLGRpW~~~s~~v~~~s~~~~~I~  391 (467)
                      +||+|+|+++++..++.++||||+|+++.+++||||+||+|+++.         ++||||||++|+|+|||+|+|+++|+
T Consensus       162 vf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I~  241 (317)
T 1xg2_A          162 VFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLIN  241 (317)
T ss_dssp             EEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECTTBC
T ss_pred             EEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCCccc
Confidence            999999999987667789999999999999999999999997653         79999999999999999999999999


Q ss_pred             cCCCcCCCCCCCccccEEEEeeccCCCCCCCCcccCCCccccCCHHHHhccchhccccCCCCCCCCCCcccCCCC
Q 012274          392 PRGWLEWYGNFALNTLWYGEYRNYGPGASLNGRVKWPGYHIIRDASAARYFTAGRFIDGMAWLPGTGIRFTAGLG  466 (467)
Q Consensus       392 p~Gw~~w~~~~~~~~~~f~Ey~n~GpGa~~~~R~~w~~~~~l~~~~~a~~~t~~~~~~g~~W~p~~~~~~~~~~~  466 (467)
                      |+||.+|++++++++++|+||+|+|||+++++||+|+++++|++++||++|++.+||+|++|+|.++|||..||.
T Consensus       242 p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~~  316 (317)
T 1xg2_A          242 PAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGLY  316 (317)
T ss_dssp             TTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSSC
T ss_pred             ccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCcccccccc
Confidence            999999999888899999999999999999999999998889888899999999999999999999999999985
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 467
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-146
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 4e-96
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 5e-16
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 5e-11
d1ru4a_400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 6e-06
d1ofla_ 481 b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin 0.003
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  417 bits (1074), Expect = e-146
 Identities = 174/313 (55%), Positives = 221/313 (70%), Gaps = 9/313 (2%)

Query: 162 ADAVVALDGTGHYRTITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGI 221
            + VVA DG+G Y+T++EA+ AAP  SK RYVI +K GVYRENVD+ KKK NIM +GDG 
Sbjct: 7   PNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGR 66

Query: 222 GATVVTGNRNFMQGWTTFRTATVAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAF 281
            +T++T ++N   G TTF +ATVA  G GF+ARD+TF+NTAG   HQAVALRV SD SAF
Sbjct: 67  TSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAF 126

Query: 282 FRCSVEGYQDTLYAHSLRQFYRECNIYGTIDFIFGNGAAVLQNCKIYSRVPLPLQKVTIT 341
           +RC +  YQD+LY HS RQF+  C I GT+DFIFGN A VLQ+C I++R P   QK  +T
Sbjct: 127 YRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVT 186

Query: 342 AQGRKNPNQNTGFSIQDSYVVATQ---------PTYLGRPWKQYSRTVYMNTYMSGLVQP 392
           AQGR +PNQNTG  IQ S + AT          PTYLGRPWK+YSRTV M + ++ ++ P
Sbjct: 187 AQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINP 246

Query: 393 RGWLEWYGNFALNTLWYGEYRNYGPGASLNGRVKWPGYHIIRDASAARYFTAGRFIDGMA 452
            GW  W GNFAL+TL+YGEY+N G GA+ +GRV W G+ +I  ++ A+ FT G FI G +
Sbjct: 247 AGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGS 306

Query: 453 WLPGTGIRFTAGL 465
           WL  T   F+ GL
Sbjct: 307 WLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query467
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.83
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.8
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.1
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.74
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.07
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.57
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.33
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.8
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.93
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.92
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.86
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.8
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 95.56
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.51
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.5
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.46
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.28
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.1
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.67
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 93.82
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 85.07
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 84.69
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 83.27
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=9.1e-96  Score=731.21  Aligned_cols=307  Identities=57%  Similarity=0.970  Sum_probs=294.8

Q ss_pred             CCcccEEEcCCCCCCCccHHHHHHHCCCCCcceEEEEEeCceEEEEEEecccCCCeEEeccCCCcceEecccccccCccc
Q 012274          159 RMHADAVVALDGTGHYRTITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTT  238 (467)
Q Consensus       159 ~~~~~i~V~~dg~g~f~TIq~Ai~aap~~~~~~~~I~I~~G~Y~E~v~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t  238 (467)
                      .++++++|++||+|+|+|||+||+++|.+++.|++|+|+||+|+|+|.||++|++|||+|+|++.|+|+++.+..++.+|
T Consensus         4 ~~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t   83 (319)
T d1gq8a_           4 TVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTT   83 (319)
T ss_dssp             SSCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCT
T ss_pred             cCCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCcc
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999888888889


Q ss_pred             cceeeEEEEcCcEEEEEeEEEeCCCCCCCceEEEEecCcceEEEEeeEEeeceeeeecccceEeeecEEEccceeEeccc
Q 012274          239 FRTATVAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAFFRCSVEGYQDTLYAHSLRQFYRECNIYGTIDFIFGNG  318 (467)
Q Consensus       239 ~~sat~~v~~~~f~~~~lti~N~~g~~~~qAvAl~~~~d~~~~~~C~~~g~QDTL~~~~~r~~~~~c~I~G~vDfIfG~~  318 (467)
                      +.++||.|.+++|+++||+|+|++|+.++|||||++.+|+++||+|+|+|||||||++++||||++|+|+|+||||||++
T Consensus        84 ~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~~  163 (319)
T d1gq8a_          84 FNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNA  163 (319)
T ss_dssp             GGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEESC
T ss_pred             ccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEecCc
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeeEEEEecCCCCCceEEEecCCCCCCCCceEEEECCEEccC---------CceeeeccCCCcceEEEEecCCCCc
Q 012274          319 AAVLQNCKIYSRVPLPLQKVTITAQGRKNPNQNTGFSIQDSYVVAT---------QPTYLGRPWKQYSRTVYMNTYMSGL  389 (467)
Q Consensus       319 ~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~---------~~~yLGRpW~~~s~~v~~~s~~~~~  389 (467)
                      +++||+|+|+++.+..++.++||||+|+++.+++||||++|+|+++         +++||||||++++||||++|+|+++
T Consensus       164 ~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~~~  243 (319)
T d1gq8a_         164 AVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNV  243 (319)
T ss_dssp             EEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECTT
T ss_pred             eeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecccccc
Confidence            9999999999998766778999999999999999999999999764         3579999999999999999999999


Q ss_pred             cccCCCcCCCCCCCccccEEEEeeccCCCCCCCCcccCCCccccCCHHHHhccchhccccCCCCCCCCCCcccCCC
Q 012274          390 VQPRGWLEWYGNFALNTLWYGEYRNYGPGASLNGRVKWPGYHIIRDASAARYFTAGRFIDGMAWLPGTGIRFTAGL  465 (467)
Q Consensus       390 I~p~Gw~~w~~~~~~~~~~f~Ey~n~GpGa~~~~R~~w~~~~~l~~~~~a~~~t~~~~~~g~~W~p~~~~~~~~~~  465 (467)
                      |.|+||.+|++.+.+++++|+||+|+|||+++++||+|++++++++++||++|+.++||+|++|+|.++|||..||
T Consensus       244 I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         244 INPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             BCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             cccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            9999999999988889999999999999999999999999888889999999999999999999999999999987
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure