Citrus Sinensis ID: 012295

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460------
MGSVEEEHQSPLVGSFSSSDHESGKPFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHccEEEEEEcccccHHHHccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHEEEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccccccEEEEEEHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mgsveeehqsplvgsfsssdhesgkpfertGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLlcdcyrfpdpevgpnriRSFTQAVKLYLgdknqkvcgifvqeslygagitytFTTANCLRAIQksncyhreghnapcaygdtkhmLLFGAVQVVMsqipdfhnMEWLSVIAAIMSFAYSFIGFGLGFAKVIEngrikgsiagvptaNLADKLWLAFQALGDIAFAYPYSIILLEIQdtlkspppenktmKMASMISIFITTFFYLCcgcfgyaafgndtpgnlltgfgfyepywliDLANACIVLHLVGGYQIFSQPVFAFVERWftrkypssgfvnnfytfklpllpplrvNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVlgalnfwplaiyfPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG
mgsveeehqsplvgsfsssdhesgKPFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG
MGSVEEEHQSPLVGSFSSSDHESGKPFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTiigligsieglisAKLG
*****************************TGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDT*************ASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLI*****
******************************GTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKL*
***************************ERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG
*********************ESGKPFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG
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MGSVEEEHQSPLVGSFSSSDHESGKPFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query466 2.2.26 [Sep-21-2011]
Q9FF99467 Probable amino acid perme yes no 0.991 0.989 0.636 1e-168
Q38967493 Amino acid permease 2 OS= no no 0.942 0.890 0.493 1e-135
Q42400485 Amino acid permease 1 OS= no no 0.984 0.946 0.489 1e-135
Q39134476 Amino acid permease 3 OS= no no 0.946 0.926 0.504 1e-135
O80592475 Amino acid permease 8 OS= no no 0.948 0.930 0.516 1e-135
Q9FN04466 Amino acid permease 4 OS= no no 0.942 0.942 0.5 1e-133
P92934481 Amino acid permease 6 OS= no no 0.982 0.952 0.486 1e-131
Q8GUM3480 Amino acid permease 5 OS= no no 0.948 0.920 0.497 1e-130
O22719451 Lysine histidine transpor no no 0.826 0.853 0.272 1e-34
Q9FKS8446 Lysine histidine transpor no no 0.806 0.843 0.273 5e-32
>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1 Back     alignment and function desciption
 Score =  592 bits (1526), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 298/468 (63%), Positives = 370/468 (79%), Gaps = 6/468 (1%)

Query: 3   SVEEEHQSPLVGSFSSSDHESGKPFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWI 62
            ++E+ +S ++       H+S     RTGT+ TA+AHIITGVIGAGVLSLAW+ A+LGWI
Sbjct: 2   DIKEDDESRVITPTELQLHDSVT--ARTGTLWTAVAHIITGVIGAGVLSLAWATAELGWI 59

Query: 63  AGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKVCGIFVQ 122
           AGP  +IAFA VT++S+ LL DCYRFPDP  GP R+ S++QAVKLYLG KN+ VCG+ V 
Sbjct: 60  AGPAALIAFAGVTLLSAFLLSDCYRFPDPNNGPLRLNSYSQAVKLYLGKKNEIVCGVVVY 119

Query: 123 ESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKH--MLLFGAVQVVMSQIP 180
            SL+G GI YT   A C RAI KSNCYHR GHNA C+YGD  +  M+LFG  Q+ MSQIP
Sbjct: 120 ISLFGCGIAYTIVIATCSRAIMKSNCYHRNGHNATCSYGDNNNYFMVLFGLTQIFMSQIP 179

Query: 181 DFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQAL 240
           +FHNM WLS++AAIMSF YSFIG GL   K+IEN +I+GSI G+P  N  +K+W+ FQAL
Sbjct: 180 NFHNMVWLSLVAAIMSFTYSFIGIGLALGKIIENRKIEGSIRGIPAENRGEKVWIVFQAL 239

Query: 241 GDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT 300
           G+IAF+YP+SIILLEIQDTL+SPP E +TMK AS +++FI TFF+ CCGCFGYAAFG+ T
Sbjct: 240 GNIAFSYPFSIILLEIQDTLRSPPAEKQTMKKASTVAVFIQTFFFFCCGCFGYAAFGDST 299

Query: 301 PGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNF 360
           PGNLLTGFGFYEP+WL+D ANACIVLHLVGGYQ++SQP+FA  ER  T+KYP + F+  F
Sbjct: 300 PGNLLTGFGFYEPFWLVDFANACIVLHLVGGYQVYSQPIFAAAERSLTKKYPENKFIARF 359

Query: 361 YTFKLPLL--PPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFP 418
           Y FKLPLL    +R+N +R+C RT YV+ TT VA++FPYFN+VLGV+GAL FWPLA+YFP
Sbjct: 360 YGFKLPLLRGETVRLNPMRMCLRTMYVLITTGVAVMFPYFNEVLGVVGALAFWPLAVYFP 419

Query: 419 VEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG 466
           VEM  +QKKI +WTR W++LR FSF+CLLV ++ L+GSI GL+ AK G
Sbjct: 420 VEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIYGLVGAKFG 467
Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1 Back     alignment and function description
>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2 Back     alignment and function description
>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1 Back     alignment and function description
>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1 Back     alignment and function description
>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1 Back     alignment and function description
>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query466
255586132456 amino acid transporter, putative [Ricinu 0.957 0.978 0.772 0.0
224122284458 amino acid permease [Populus trichocarpa 0.937 0.954 0.780 0.0
359494348 623 PREDICTED: probable amino acid permease 0.950 0.711 0.730 0.0
296089993458 unnamed protein product [Vitis vinifera] 0.948 0.965 0.731 0.0
357495243467 Amino acid permease [Medicago truncatula 0.997 0.995 0.701 0.0
255586130461 amino acid transporter, putative [Ricinu 0.987 0.997 0.677 0.0
224122280440 amino acid permease [Populus trichocarpa 0.929 0.984 0.732 0.0
225462048472 PREDICTED: probable amino acid permease 0.997 0.985 0.667 0.0
356501671461 PREDICTED: probable amino acid permease 0.984 0.995 0.684 0.0
356552382461 PREDICTED: LOW QUALITY PROTEIN: probable 0.984 0.995 0.686 0.0
>gi|255586132|ref|XP_002533728.1| amino acid transporter, putative [Ricinus communis] gi|223526366|gb|EEF28659.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/448 (77%), Positives = 381/448 (85%), Gaps = 2/448 (0%)

Query: 19  SDHESGKPFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVS 78
           S  + GKP  RTGT+ + +AHIIT VIG+GVLSLAWS AQLGWIAGP+ ++ FA VT VS
Sbjct: 11  SYDDDGKPL-RTGTLWSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPISLLCFAIVTYVS 69

Query: 79  SSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTAN 138
           + LL DCYR PDP  G  R  S+  AV++ LG      CG+    S++G GI Y  TTA 
Sbjct: 70  AFLLSDCYRSPDPVTG-TRNYSYMDAVRVNLGKTQTWFCGLLQYFSMFGTGIAYVITTAT 128

Query: 139 CLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFA 198
            ++AIQKSNCYHREGH APC+Y DT  MLLFG VQ+V+SQIP+FHNMEWLSVIAAIMSF 
Sbjct: 129 SMKAIQKSNCYHREGHRAPCSYEDTYFMLLFGFVQIVVSQIPNFHNMEWLSVIAAIMSFT 188

Query: 199 YSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQD 258
           YSFIGFGLGFAKVIENGRIKGSI GVP ANLADKLWLAF+ALGDIAFAYPYS+ILLEIQD
Sbjct: 189 YSFIGFGLGFAKVIENGRIKGSITGVPAANLADKLWLAFEALGDIAFAYPYSLILLEIQD 248

Query: 259 TLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLID 318
           TLKS PPENKTMK  SMI+IF+TTFFYLCCGCFGYAAFGN+TPGNLLTGFGFYEPYWLID
Sbjct: 249 TLKSSPPENKTMKKGSMIAIFVTTFFYLCCGCFGYAAFGNNTPGNLLTGFGFYEPYWLID 308

Query: 319 LANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRL 378
            ANACIVLHLVGGYQI+SQPVFAFVE WF  KYP S FVN FYT KLP  PPL+VNILRL
Sbjct: 309 FANACIVLHLVGGYQIYSQPVFAFVEGWFGNKYPRSRFVNKFYTMKLPFSPPLQVNILRL 368

Query: 379 CFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVL 438
           C RTAYV +TTA+A+ FPYFNQ+LGVLGALNFWPLAIYFPVEMYFVQKKIG WTRKWIVL
Sbjct: 369 CSRTAYVAATTAIAMTFPYFNQILGVLGALNFWPLAIYFPVEMYFVQKKIGPWTRKWIVL 428

Query: 439 RTFSFICLLVTIIGLIGSIEGLISAKLG 466
           RTFSF+CLLV+I+GLIGSIEGLISAK G
Sbjct: 429 RTFSFVCLLVSIVGLIGSIEGLISAKFG 456

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224122284|ref|XP_002330585.1| amino acid permease [Populus trichocarpa] gi|222872143|gb|EEF09274.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359494348|ref|XP_002268981.2| PREDICTED: probable amino acid permease 7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296089993|emb|CBI39812.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357495243|ref|XP_003617910.1| Amino acid permease [Medicago truncatula] gi|355519245|gb|AET00869.1| Amino acid permease [Medicago truncatula] Back     alignment and taxonomy information
>gi|255586130|ref|XP_002533727.1| amino acid transporter, putative [Ricinus communis] gi|223526365|gb|EEF28658.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224122280|ref|XP_002330584.1| amino acid permease [Populus trichocarpa] gi|222872142|gb|EEF09273.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225462048|ref|XP_002268936.1| PREDICTED: probable amino acid permease 7 [Vitis vinifera] gi|296089992|emb|CBI39811.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356501671|ref|XP_003519647.1| PREDICTED: probable amino acid permease 7-like [Glycine max] Back     alignment and taxonomy information
>gi|356552382|ref|XP_003544547.1| PREDICTED: LOW QUALITY PROTEIN: probable amino acid permease 7-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query466
TAIR|locus:2172868467 AAP7 "amino acid permease 7" [ 0.989 0.987 0.625 5.5e-164
TAIR|locus:2031402476 AAP3 "amino acid permease 3" [ 0.935 0.915 0.514 4.2e-127
TAIR|locus:2168912481 AAP6 "amino acid permease 6" [ 0.952 0.923 0.490 4.3e-125
TAIR|locus:2184707493 AAP2 "amino acid permease 2" [ 0.927 0.876 0.495 1.9e-124
TAIR|locus:2201871475 AAP8 "amino acid permease 8" [ 0.901 0.884 0.525 1e-123
TAIR|locus:2163981466 AAP4 "amino acid permease 4" [ 0.927 0.927 0.502 1.3e-123
TAIR|locus:2016600485 AAP1 "amino acid permease 1" [ 0.952 0.915 0.490 5.7e-123
TAIR|locus:2205876480 AAP5 "amino acid permease 5" [ 0.920 0.893 0.503 1.5e-120
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.635 0.671 0.309 5.2e-43
TAIR|locus:2031215440 AT1G25530 [Arabidopsis thalian 0.656 0.695 0.296 6.6e-41
TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1596 (566.9 bits), Expect = 5.5e-164, P = 5.5e-164
 Identities = 292/467 (62%), Positives = 360/467 (77%)

Query:     4 VEEEHQSPLVGSFSSSDHESGKPFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIA 63
             ++E+ +S ++       H+S     RTGT+ TA+AHIITGVIGAGVLSLAW+ A+LGWIA
Sbjct:     3 IKEDDESRVITPTELQLHDSVTA--RTGTLWTAVAHIITGVIGAGVLSLAWATAELGWIA 60

Query:    64 GPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKVCGIFVQE 123
             GP  +IAFA VT++S+ LL DCYRFPDP  GP R+ S++QAVKLYLG KN+ VCG+ V  
Sbjct:    61 GPAALIAFAGVTLLSAFLLSDCYRFPDPNNGPLRLNSYSQAVKLYLGKKNEIVCGVVVYI 120

Query:   124 SLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKH--MLLFGAVQVVMSQIPD 181
             SL+G GI YT   A C RAI KSNCYHR GHNA C+YGD  +  M+LFG  Q+ MSQIP+
Sbjct:   121 SLFGCGIAYTIVIATCSRAIMKSNCYHRNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPN 180

Query:   182 FHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALG 241
             FHNM WLS++AAIMSF YSFIG GL   K+IEN +I+GSI G+P  N  +K+W+ FQALG
Sbjct:   181 FHNMVWLSLVAAIMSFTYSFIGIGLALGKIIENRKIEGSIRGIPAENRGEKVWIVFQALG 240

Query:   242 DIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTP 301
             +IAF+YP+SIILLEIQDTL+SPP E +TMK AS +++FI TFF+ CCGCFGYAAFG+ TP
Sbjct:   241 NIAFSYPFSIILLEIQDTLRSPPAEKQTMKKASTVAVFIQTFFFFCCGCFGYAAFGDSTP 300

Query:   302 GNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFY 361
             GNLLTGFGFYEP+WL+D ANACIVLHLVGGYQ++SQP+FA  ER  T+KYP + F+  FY
Sbjct:   301 GNLLTGFGFYEPFWLVDFANACIVLHLVGGYQVYSQPIFAAAERSLTKKYPENKFIARFY 360

Query:   362 TFKLPLL--PPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPV 419
              FKLPLL    +R+N +R+C RT YV+ TT VA++FPYFN+VLGV+GAL FWPLA+YFPV
Sbjct:   361 GFKLPLLRGETVRLNPMRMCLRTMYVLITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPV 420

Query:   420 EMYFVQKKIGAWTRKWIVLRTFSFICLLVTXXXXXXXXXXXXXAKLG 466
             EM  +QKKI +WTR W++LR FSF+CLLV              AK G
Sbjct:   421 EMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIYGLVGAKFG 467
GO:0005886 "plasma membrane" evidence=ISM
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IDA
GO:0006865 "amino acid transport" evidence=ISS
GO:0016020 "membrane" evidence=ISS
TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FF99AAP7_ARATHNo assigned EC number0.63670.99140.9892yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query466
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 9e-85
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 4e-06
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  266 bits (681), Expect = 9e-85
 Identities = 122/435 (28%), Positives = 194/435 (44%), Gaps = 30/435 (6%)

Query: 29  RTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRF 88
            T +   A+ ++I  +IGAGVLSL ++  QLGWI G + ++    +++ +  LL  C ++
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 89  PDPEVGPNRIRSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNC 148
            D   G  R +S+        G K + +    +  +L+G  I+Y     + L AI  S  
Sbjct: 61  VDKVKGK-RRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFF 119

Query: 149 YHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGF 208
                            +++FG + + +S IP+   +  LS++AA+ S     +      
Sbjct: 120 DTCHISLVY-------FIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLS--- 169

Query: 209 AKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENK 268
             V E G +     G   A    KL   F A+G I FA+    +LL IQ+T+KS P + K
Sbjct: 170 --VAELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKS-PSKFK 226

Query: 269 TMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHL 328
            M    + +I I T  Y+  G  GY AFGN+  GN+L         WLID+AN  +VLHL
Sbjct: 227 AMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPK--SDWLIDIANLLLVLHL 284

Query: 329 VGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVST 388
           +  Y + + P+   VE    RK       +  +  K  L        LR+  R+  VV T
Sbjct: 285 LLSYPLQAFPIRQIVENLLFRK-----GASGKHNPKSKL--------LRVVIRSGLVVIT 331

Query: 389 TAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKI-GAWTRKWIVLRTFSFICLL 447
             +AI  P+    L ++GA +  PL    P   +   KK       K         IC++
Sbjct: 332 YLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIV 391

Query: 448 VTIIGLIGSIEGLIS 462
           + ++ +   + GLI 
Sbjct: 392 IGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 466
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PLN03074473 auxin influx permease; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PRK10483414 tryptophan permease; Provisional 99.94
PRK09664415 tryptophan permease TnaB; Provisional 99.94
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.94
PRK15132403 tyrosine transporter TyrP; Provisional 99.93
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.91
PRK13629443 threonine/serine transporter TdcC; Provisional 99.91
TIGR00814397 stp serine transporter. The HAAAP family includes 99.86
PRK10655438 potE putrescine transporter; Provisional 99.69
PRK15049499 L-asparagine permease; Provisional 99.65
PRK10644445 arginine:agmatin antiporter; Provisional 99.65
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.64
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.61
PRK10249458 phenylalanine transporter; Provisional 99.61
PRK11387471 S-methylmethionine transporter; Provisional 99.6
PRK10746461 putative transport protein YifK; Provisional 99.6
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.6
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.59
TIGR00909429 2A0306 amino acid transporter. 99.58
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.58
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.58
PRK10580457 proY putative proline-specific permease; Provision 99.58
PRK10238456 aromatic amino acid transporter; Provisional 99.57
PRK11021410 putative transporter; Provisional 99.57
TIGR00913478 2A0310 amino acid permease (yeast). 99.56
PRK10836489 lysine transporter; Provisional 99.54
TIGR00906557 2A0303 cationic amino acid transport permease. 99.53
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.51
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.5
TIGR00911501 2A0308 L-type amino acid transporter. 99.48
TIGR00930 953 2a30 K-Cl cotransporter. 99.47
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.47
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.43
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.41
COG0833541 LysP Amino acid transporters [Amino acid transport 99.36
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.36
COG0531466 PotE Amino acid transporters [Amino acid transport 99.31
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.25
PRK15238496 inner membrane transporter YjeM; Provisional 99.21
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.19
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.17
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.15
KOG3832319 consensus Predicted amino acid transporter [Genera 98.99
KOG1286554 consensus Amino acid transporters [Amino acid tran 98.93
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 98.89
PF03845320 Spore_permease: Spore germination protein; InterPr 98.87
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.65
PRK11375484 allantoin permease; Provisional 98.51
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.51
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.3
COG3949349 Uncharacterized membrane protein [Function unknown 98.23
COG1457442 CodB Purine-cytosine permease and related proteins 98.18
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.04
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.04
TIGR00813407 sss transporter, SSS family. have different number 98.02
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.02
PRK12488549 acetate permease; Provisional 98.0
PRK11017404 codB cytosine permease; Provisional 97.82
COG0591493 PutP Na+/proline symporter [Amino acid transport a 97.77
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.71
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.66
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.59
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.45
PRK09395551 actP acetate permease; Provisional 97.39
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 97.34
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.31
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.3
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.24
PRK15419502 proline:sodium symporter PutP; Provisional 97.2
PRK00701439 manganese transport protein MntH; Reviewed 96.93
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 96.84
KOG1288 945 consensus Amino acid transporters [Amino acid tran 96.83
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 96.71
PRK10484523 putative transporter; Provisional 96.39
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 96.27
PF01566358 Nramp: Natural resistance-associated macrophage pr 96.26
COG4147529 DhlC Predicted symporter [General function predict 95.52
PRK15015 701 carbon starvation protein A; Provisional 95.01
COG1966575 CstA Carbon starvation protein, predicted membrane 94.99
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 94.84
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 94.8
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 94.39
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 93.55
KOG2466572 consensus Uridine permease/thiamine transporter/al 93.48
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 92.97
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 92.74
COG0733439 Na+-dependent transporters of the SNF family [Gene 91.33
PRK15433439 branched-chain amino acid transport system 2 carri 90.65
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 83.49
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 83.07
KOG1291503 consensus Mn2+ and Fe2+ transporters of the NRAMP 81.94
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-59  Score=460.93  Aligned_cols=407  Identities=35%  Similarity=0.627  Sum_probs=361.7

Q ss_pred             CCCCccccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHH
Q 012295           23 SGKPFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFT  102 (466)
Q Consensus        23 ~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~  102 (466)
                      +..+++|+++++++++|.+|.++|.|+|++||++++.||+.|+++++..++++.||+.+|.+|.+.++++.| +|.++|.
T Consensus        30 ~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~-~r~~~Y~  108 (437)
T KOG1303|consen   30 DPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPG-KRRYRYP  108 (437)
T ss_pred             CccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-ccCCChH
Confidence            344668889999999999999999999999999999999999999999999999999999999999988888 8889999


Q ss_pred             HHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCC
Q 012295          103 QAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDF  182 (466)
Q Consensus       103 ~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l  182 (466)
                      |+++++||+++++++.+++.+.+++.++.|++..+|+++.+.+.++.+..      ..+.+.|+++++++++|++++||+
T Consensus       109 dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~  182 (437)
T KOG1303|consen  109 DLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNF  182 (437)
T ss_pred             HHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCc
Confidence            99999999999999999999999999999999999999999998765432      233468899999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCC
Q 012295          183 HNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKS  262 (466)
Q Consensus       183 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~  262 (466)
                      +.++++|..+.++.+.+..+.++..+.+.......+.....   ..+..   ..++++|++.|||.+|..+||||++||+
T Consensus       183 ~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~---~~~~~---~~f~a~g~iaFaf~gH~v~peIq~tMk~  256 (437)
T KOG1303|consen  183 HSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLD---LGTIP---TVFTALGIIAFAYGGHAVLPEIQHTMKS  256 (437)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCccc---CCCCc---chhhhhhheeeeecCCeeeeehHhhcCC
Confidence            99999999999999988887777766655443322111111   11111   1179999999999999999999999999


Q ss_pred             CCccccchhHHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCchHHHHHHHHHHHHHHHhhccccccchHHH
Q 012295          263 PPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAF  342 (466)
Q Consensus       263 p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~  342 (466)
                      |    ++|+|++.+++.+++++|+.++++||++|||+++|+++.|+.  .|.|+...+++++.+|++.+|+++..|+.+.
T Consensus       257 p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~  330 (437)
T KOG1303|consen  257 P----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDV  330 (437)
T ss_pred             c----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHH
Confidence            9    789999999999999999999999999999999999999996  6899999999999999999999999999999


Q ss_pred             HHHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhcchhhhhhhhHHH
Q 012295          343 VERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMY  422 (466)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~Ga~~~~~~~~ilP~~~~  422 (466)
                      +|+....++++  +.             ++.+..|.+.|..+++.++++|+.+|+|+++++++||+...++++++|+++|
T Consensus       331 ~E~~~~~~~~~--~~-------------~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~y  395 (437)
T KOG1303|consen  331 VEKLIGVKHPD--FK-------------KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMY  395 (437)
T ss_pred             HHHHhccCCcc--cc-------------ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998765332  10             1233689999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 012295          423 FVQKKIGAWTRKWIVLRTF-SFICLLVTIIGLIGSIEGLISA  463 (466)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~g~~~si~~ii~~  463 (466)
                      +..+|.+++..+|..++.. .++++++++....++++.++.+
T Consensus       396 l~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  396 LLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             HHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            9999999999999999988 7999999999999999988764

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query466
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.75
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.64
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.49
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.74
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.02
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.68
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.75  E-value=1e-16  Score=162.13  Aligned_cols=367  Identities=10%  Similarity=0.003  Sum_probs=206.4

Q ss_pred             CccccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHH
Q 012295           26 PFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAV  105 (466)
Q Consensus        26 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~  105 (466)
                      +++|+.+.++.+...+++++|+|++.+|...++.|.. +++..++.++.....+..+.|..... ++.|     ...+..
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~-p~~G-----g~y~~~   77 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLD-PSPG-----GSYAYA   77 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHC-CCTT-----THHHHH
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccC-CCCC-----CchhhH
Confidence            4567788999999999999999999999998888864 78888888899988888888876543 3232     577778


Q ss_pred             HHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCch
Q 012295          106 KLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNM  185 (466)
Q Consensus       106 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l  185 (466)
                      ++.+||+.++++.+..++.......++....++++..+++...       .  .+....+ .+..+++..+...+..|..
T Consensus        78 ~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~-~~~~~~~~~~in~~g~~~~  147 (445)
T 3l1l_A           78 RRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-------D--PWVLTIT-CVVVLWIFVLLNIVGPKMI  147 (445)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG-------S--HHHHHHH-HHHHHHHHHHHHHHCHHHH
T ss_pred             HhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc-------c--cHHHHHH-HHHHHHHHHHHHHhchHHH
Confidence            9999999999999999888877777777777776655433210       0  0000111 1111111222233445555


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCCCc
Q 012295          186 EWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPP  265 (466)
Q Consensus       186 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~  265 (466)
                      .+++.+.....+...++   ..+......++ +....... ........++..++....|+|.|........+|+|||+ 
T Consensus       148 ~~~~~~~~~~~i~~~~~---~~i~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~-  221 (445)
T 3l1l_A          148 TRVQAVATVLALIPIVG---IAVFGWFWFRG-ETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK-  221 (445)
T ss_dssp             HHHHHHHHHHHHHHHHH---HHHTTSTTCCC-CCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHH-
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHhCh-hhcccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-
Confidence            55555444433321111   11111111111 10001111 11112245677899999999999999999999999995 


Q ss_pred             cccchhHHHHHHHHHHHHHHHhhhhhcccccccccc----ccccccccccCchHHHHHHHHHHHHHHHhhccccccchHH
Q 012295          266 ENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTP----GNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFA  341 (466)
Q Consensus       266 ~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~----~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~  341 (466)
                        |+.+|++..+..++.++|....+......+.+..    +....-......+|...+..+...+....+.-......-+
T Consensus       222 --r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR  299 (445)
T 3l1l_A          222 --RNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQ  299 (445)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred             --ccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              8899999999999999999887765555543221    1111111110123455555666666555554222222222


Q ss_pred             HHHHHHhh-hCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHc----cchHHHHHHhhhhhcchhhhh
Q 012295          342 FVERWFTR-KYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIF----PYFNQVLGVLGALNFWPLAIY  416 (466)
Q Consensus       342 ~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~----p~~~~i~~~~Ga~~~~~~~~i  416 (466)
                      .+...-.+ ..|+  ...+.++.+.|        ..-..+..++..+ ..+....    ..++.+.++.+  ....+.|.
T Consensus       300 ~~~~~a~dg~lP~--~~~~~~~~~~P--------~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~  366 (445)
T 3l1l_A          300 TAKAAADDGLFPP--IFARVNKAGTP--------VAGLIIVGILMTI-FQLSSISPNATKEFGLVSSVSV--IFTLVPYL  366 (445)
T ss_dssp             HHHHHHHTTSSCG--GGGCCCTTCCC--------HHHHHHHHHHHHH-HHHSTTSHHHHCCCHHHHHHHH--HHHHHHHH
T ss_pred             HHHHHHhCCCCcH--HHHhcCCCCCC--------HHHHHHHHHHHHH-HHHHHHcccHHHHHHHHHHHHH--HHHHHHHH
Confidence            22222111 1231  11111112333        2222222221111 1111112    23566666554  33478899


Q ss_pred             hhhHHHHHHhccCc
Q 012295          417 FPVEMYFVQKKIGA  430 (466)
Q Consensus       417 lP~~~~~~~~~~~~  430 (466)
                      ++.+.+++.+|+++
T Consensus       367 ~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          367 YTCAALLLLGHGHF  380 (445)
T ss_dssp             HHHHHHHHHHSSSS
T ss_pred             HHHHHHHHHhhcCc
Confidence            99999998876554
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query466
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 91.83
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.83  E-value=5.4  Score=37.63  Aligned_cols=107  Identities=15%  Similarity=0.034  Sum_probs=62.1

Q ss_pred             cHHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHHHHHHH----HHHhhccCCCCCcCccccccHHHHHH
Q 012295           32 TICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVTIVSSS----LLCDCYRFPDPEVGPNRIRSFTQAVK  106 (466)
Q Consensus        32 s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~----~l~~~~~~~~~~~g~~~~~~y~~~~~  106 (466)
                      +..+-++..++..+|.| +.-.||...+-|-..-++-.+++.++...-..    .+.+-.++       .....+..+..
T Consensus         6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~-------g~i~~~~~i~~   78 (509)
T d2a65a1           6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA-------QGHGTTPAIFY   78 (509)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-------TTCCSHHHHHH
T ss_pred             ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC-------CcccHHHHHHH
Confidence            34567788899999998 77799998777644333333333333333222    22332221       12456777777


Q ss_pred             HHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHh
Q 012295          107 LYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQK  145 (466)
Q Consensus       107 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~  145 (466)
                      ...+.+.-..+.+...+..+..++-|.+..+..+..+..
T Consensus        79 ~~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~  117 (509)
T d2a65a1          79 LLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIK  117 (509)
T ss_dssp             HHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776544333445555556666666677777776655544