Citrus Sinensis ID: 012296

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460------
Protein Sequence
MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAAPAPPAPVEITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLMET
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccHHHHHHHHHHHHcccccHHHHHHHHccccccccccccHHHHHccccccccccccccccccccccccccHHHHHHHHHHccccccccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHccccccEEccccccHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHccccccEEEEEccccHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHcccEEEEccccccHHccccccccccEEEEcccccccccccccccEEEccHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccHHHHHHHHcccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHccccccEEEEEEEEcccccccccccHcccHHHcccHccccHHHccccccEEEcccccccHHHcccccccccccccccEEEEEcccccccccccccEEccEEEEEEEEEccHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHccccccEEEEEcccccccccccHHHHHHHHHccccEEEEEccccccccccHHHHcccEEEEEcccccccccccccEEEEEccHHHHHHHHHHHHcccEccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccHHHHcccccccccEEEEEEcccc
Coil and Loop (DISEMBL)
mavsscssqkilsfssscssfecrsdpdfsgsarfdkprisaARVIGastasfsgvsslifrfppnfvrqLSTKARRNCSNIGVAQIVAASwsnsvgsgsnsaaataasaapappapveitsgddialvdGLKNVQLEALADLKNeasflssdgslaihagerlgrgivtdaittpvvntsayfFKKTAELIDFKEKRRasfeygrygnpTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVpagghivtttdcyrKTRIFIETVlpkmgitatvidpadmEGLEAALnnnnvslfftesptnpflrcvDVKLVSDLchkkgaivcidgtfatplnQKALSLGADLVLHSAtkfigghndvlagsisgsgkLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEahpkvkrvhypglkshpehhiatqqmtgfggVVSFEVLMET
Flexible Loop (DISEMBL)
mavsscssqkilsfssscssfecrSDPDfsgsarfdkPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAAPAPPAPVEITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGrgivtdaittpvvntsayffkktaelidfkekrrasfeygrygnpttvVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFietvlpkmgITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLMET
Low Complexity Region (SEG)
MAVsscssqkilsfssscssfecrsDPDFSGSARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVaaswsnsvgsgsnsaaataasaapappapvEITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLMET
Disordered region (IsUnstruct)
*****************************************AARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASW*******************************DDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKS**EHHIATQQMTGFGGVVSFEV****
Disordered Region (DISOPRED)
**************SSSCSSFEC********************************VSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAA**************************************************************DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM**
Disordered Region (DISEMBL)
****************************FSGSARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWS**********************APVEITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLMET
Disordered Region (DISPRO)
******************************************************GVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSN**********************************V**********LA**KN***FLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAAPAPPAPVEITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLMET
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	466	2.2.26 [Sep-21-2011]
P55217	563	Cystathionine gamma-synth	yes	no	0.688	0.570	0.835	1e-161
A2RM21	380	Cystathionine beta-lyase	yes	no	0.620	0.760	0.398	1e-56
P0A4K2	380	Cystathionine beta-lyase	yes	no	0.620	0.760	0.398	1e-56
P0C2T9	380	Cystathionine beta-lyase	N/A	no	0.635	0.778	0.394	1e-55
P24601	319	Probable cystathionine ga	no	no	0.626	0.915	0.370	2e-55
O05394	379	Cystathionine gamma-lyase	yes	no	0.626	0.770	0.364	4e-55
Q1M0P5	380	Cystathionine gamma-synth	yes	no	0.624	0.765	0.371	8e-54
P56069	380	Cystathionine gamma-synth	yes	no	0.624	0.765	0.371	9e-54
P55218	403	O-succinylhomoserine sulf	yes	no	0.553	0.640	0.393	2e-52
P66875	388	Cystathionine gamma-synth	yes	no	0.650	0.780	0.375	1e-51

>sp|P55217|METB_ARATH Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3

 Score =  568 bits (1463), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 270/323 (83%), Positives = 296/323 (91%), Gaps = 2/323 (0%)

Query: 140 LADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRR 199
           L D K+  SFLSSDGSL +HAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR 
Sbjct: 164 LTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRS 221

Query: 200 ASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCY 259
            SFEYGRYGNPTTVV+E+K+SALEGAEST++MASGM ASTVMLLALVPAGGHIVTTTDCY
Sbjct: 222 VSFEYGRYGNPTTVVLEDKISALEGAESTLVMASGMCASTVMLLALVPAGGHIVTTTDCY 281

Query: 260 RKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVS 319
           RKTRIF+E  LPK+GIT TVIDPAD+ GLEAA+N   VSLFFTESPTNPFLRCVD++LVS
Sbjct: 282 RKTRIFMENFLPKLGITVTVIDPADIAGLEAAVNEFKVSLFFTESPTNPFLRCVDIELVS 341

Query: 320 DLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ 379
            +CHK+G +VCIDGTFATPLNQKAL+LGADLV+HSATK+IGGHNDVLAG I GS KLV++
Sbjct: 342 KICHKRGTLVCIDGTFATPLNQKALALGADLVVHSATKYIGGHNDVLAGCICGSLKLVSE 401

Query: 380 IRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK 439
           IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQNSTA RMA+ILEAHPKV  V+YPGL 
Sbjct: 402 IRNLHHVLGGTLNPNAAYLIIRGMKTLHLRVQQQNSTAFRMAEILEAHPKVSHVYYPGLP 461

Query: 440 SHPEHHIATQQMTGFGGVVSFEV 462
           SHPEH +A +QMTGFGGVVSFE+
Sbjct: 462 SHPEHELAKRQMTGFGGVVSFEI 484

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 4EC: 8

>sp|A2RM21|METC_LACLM Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1

 Score =  221 bits (563), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 187/304 (61%), Gaps = 15/304 (4%)

Query: 167 GIVTD----AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL 222
           GI TD    A++ P+  TS Y   K   L   KE     +EY R GNPT   +EE ++ L
Sbjct: 12  GISTDKTTGAVSVPIYQTSTY---KQNGLGQPKE-----YEYSRSGNPTRHALEELIADL 63

Query: 223 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282
           EG       +SG+ A    +L+L  AG HI+   D Y  T   ++ VL K GI   ++D 
Sbjct: 64  EGGVQGFAFSSGL-AGIHAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDL 122

Query: 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK 342
           ++++ L+AA      +++F E+P+NP L+ +D+K +S +     A+  +D TFATP  Q+
Sbjct: 123 SNLDDLKAAFKEETKAIYF-ETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQ 181

Query: 343 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIR 401
            ++LGAD+VLHSATK++GGH+DV+AG ++ + K L ++I  L + +G  L P  ++L+ R
Sbjct: 182 PIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQR 241

Query: 402 GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE 461
           G+KTL LR++  ++ A ++A+ LE    V +V+YPGL SHP H IA +QM+ FGG++SFE
Sbjct: 242 GIKTLALRMEAHSANAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFE 301

Query: 462 VLME 465
           +  E
Sbjct: 302 LTDE 305

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. cremoris (strain MG1363) (taxid: 416870)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|P0A4K2|METC_LACLA Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=metC PE=3 SV=1

 Score =  221 bits (563), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 187/304 (61%), Gaps = 15/304 (4%)

Query: 167 GIVTD----AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL 222
           GI TD    A++ P+  TS Y   K   L   KE     +EY R GNPT   +EE ++ L
Sbjct: 12  GISTDKTTGAVSVPIYQTSTY---KQNGLGQPKE-----YEYSRSGNPTRHALEELIADL 63

Query: 223 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282
           EG       +SG+ A    +L+L  AG HI+   D Y  T   ++ VL K GI   ++D 
Sbjct: 64  EGGVQGFAFSSGL-AGIHAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDL 122

Query: 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK 342
           ++++ L+AA      +++F E+P+NP L+ +D+K +S +     A+  +D TFATP  Q+
Sbjct: 123 SNLDDLKAAFKEETKAIYF-ETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQ 181

Query: 343 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIR 401
            ++LGAD+VLHSATK++GGH+DV+AG ++ + K L ++I  L + +G  L P  ++L+ R
Sbjct: 182 PIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQR 241

Query: 402 GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE 461
           G+KTL LR++  ++ A ++A+ LE    V +V+YPGL SHP H IA +QM+ FGG++SFE
Sbjct: 242 GIKTLALRMEAHSANAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFE 301

Query: 462 VLME 465
           +  E
Sbjct: 302 LTDE 305

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. lactis (strain IL1403) (taxid: 272623)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|P0C2T9|METC_LACLC Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1

 Score =  217 bits (553), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 122/309 (39%), Positives = 186/309 (60%), Gaps = 13/309 (4%)

Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           IH G    R   T A++ P+  TS Y   K   L   KE     +EY R GNPT   +EE
Sbjct: 9   IHGGISTDR--TTGAVSVPIYQTSTY---KQNGLGQPKE-----YEYSRSGNPTRHALEE 58

Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
            ++ LEG       +SG+ A    +L+L  AG HI+   D Y  T   ++ VL K GI  
Sbjct: 59  LIADLEGGVQGFAFSSGL-AGIHAVLSLFSAGDHIILADDVYGGTFRLVDKVLTKTGIIY 117

Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
            ++D +++E L+AA      +++F E+P+NP L+ +D+K +S +     A+  +D TFAT
Sbjct: 118 DLVDLSNLEDLKAAFKAETKAVYF-ETPSNPLLKVLDIKEISSIAKAHNALTLVDNTFAT 176

Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAA 396
           P  Q+ ++LGAD+VLHSATK++GGH+DV+AG + + S +L  +I  L + +G  L P  +
Sbjct: 177 PYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSNELAIEIGFLQNSIGAVLGPQDS 236

Query: 397 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 456
           +L+ RG+KTL  R++  ++ A ++A+ LEA   V +V+YPGL +H  H IA +QMT FGG
Sbjct: 237 WLVQRGIKTLAPRMEAHSANAQKIAEFLEASQAVSKVYYPGLVNHEGHEIAKKQMTAFGG 296

Query: 457 VVSFEVLME 465
           ++SFE+  E
Sbjct: 297 MISFELTDE 305

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. cremoris (taxid: 1359)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|P24601|METB_HERAU Probable cystathionine gamma-synthase (Fragment) OS=Herpetosiphon aurantiacus GN=metB PE=3 SV=1

 Score =  217 bits (552), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 113/305 (37%), Positives = 182/305 (59%), Gaps = 13/305 (4%)

Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
           AIHAG+      VT A+  P+  TS Y  +   +           +EY R  NPT   ++
Sbjct: 9   AIHAGQDPES--VTGAVIVPIYQTSTYAQRGVGD--------HTGYEYSRTDNPTRTALQ 58

Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
             ++ALE A+  ++ ASG+ AST ++L ++ AG H++   D Y  T    + V+ + G++
Sbjct: 59  TCLAALEEAKHALVFASGLGASTTLML-MLKAGDHVICGDDVYGGTYRLFQRVMTEHGLS 117

Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
              ID AD E + AA+  N   L + E+PTNP L+   +  ++ +  + G    +D TFA
Sbjct: 118 FDFIDMADPEAVRAAIKPNT-RLIWLETPTNPLLKLAPIAAITRVAREHGIWTIVDNTFA 176

Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNA 395
           +P NQ+ ++LGAD+VLHS TK+IGGH+DV+ G+I + + +L  +++ L +  G    P  
Sbjct: 177 SPYNQRPITLGADMVLHSTTKYIGGHSDVVGGAIMTSNDELYEKLKFLQNAAGAVPGPFD 236

Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 455
            +L++RG+KTL +R++     AL +A+ L  HP V++V YPGL SHP+H++A +QM GFG
Sbjct: 237 CWLVLRGVKTLSIRMRDDERNALAIAQFLTEHPGVEKVIYPGLPSHPQHNLAREQMRGFG 296

Query: 456 GVVSF 460
           G++S 
Sbjct: 297 GMISI 301

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Herpetosiphon aurantiacus (taxid: 65)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|O05394|MCCB_BACSU Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1

 Score =  216 bits (549), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 185/313 (59%), Gaps = 21/313 (6%)

Query: 155 SLAIHAG----ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNP 210
           +L IH G    E+ G      A++ P+   S Y   K  +           +EY R  NP
Sbjct: 5   TLMIHGGITGDEKTG------AVSVPIYQVSTYKQPKAGQ--------HTGYEYSRTANP 50

Query: 211 TTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL 270
           T   +E  ++ LE  E+    +SGM+A T +++ L  +G H+V T D Y  T   +  VL
Sbjct: 51  TRTALEALVTELESGEAGYAFSSGMAAITAVMM-LFNSGDHVVLTDDVYGGTYRVMTKVL 109

Query: 271 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC 330
            ++GI +T +D +  E +E A+  N  +++  E+PTNP L+  D+ L++D+  K G ++ 
Sbjct: 110 NRLGIESTFVDTSSREEVEKAIRPNTKAIYI-ETPTNPLLKITDLTLMADIAKKAGVLLI 168

Query: 331 IDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGG 389
           +D TF TP  Q+ L+LGAD+VLHSATK++GGH+DV+ G  ++ S +L  ++  + +  GG
Sbjct: 169 VDNTFNTPYFQQPLTLGADIVLHSATKYLGGHSDVVGGLVVTASKELGEELHFVQNSTGG 228

Query: 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQ 449
            L P  ++L++RG+KTL LR++  +  A ++A  LE HP V+ ++YPG  +HP H +A  
Sbjct: 229 VLGPQDSWLLMRGIKTLGLRMEAIDQNARKIASFLENHPAVQTLYYPGSSNHPGHELAKT 288

Query: 450 QMTGFGGVVSFEV 462
           Q  GFGG++SF++
Sbjct: 289 QGAGFGGMISFDI 301

Catalyzes the conversion of cystathionine to cysteine, and homocysteine to sulfide.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

>sp|Q1M0P5|METB_HELPX Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=1 SV=1

 Score =  211 bits (538), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 174/304 (57%), Gaps = 13/304 (4%)

Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           IH G  +     T A++ P+  TS Y                  +EY R GNPT   +EE
Sbjct: 8   IHGG--ISEDATTGAVSVPIYQTSTYRQDAIG--------HHKGYEYSRSGNPTRFALEE 57

Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
            ++ LEG       ASG+ A    + +L+ +G H++   D Y  T      VL K G++ 
Sbjct: 58  LIADLEGGVKGFAFASGL-AGIHAVFSLLQSGDHVLLGDDVYGGTFRLFNKVLVKNGLSC 116

Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
           T+ID +D+  ++ A+  N  +L+  E+P+NP L+  D+   + +    G +  +D TFAT
Sbjct: 117 TIIDTSDLSQIKKAIKPNTKALYL-ETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT 175

Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAA 396
           P  Q  L LGAD+V+HS TK++GGH+DV+AG ++ + + L  +I    + +GG L P  +
Sbjct: 176 PYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDS 235

Query: 397 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 456
           +L+ RG+KTL LR+Q     AL +A+ LE HPKV+RV+YPGL +HP + +A +QM GF G
Sbjct: 236 WLLQRGIKTLGLRMQAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSG 295

Query: 457 VVSF 460
           ++SF
Sbjct: 296 MLSF 299

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction (By similarity). In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Helicobacter pylori (taxid: 210)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|P56069|METB_HELPY Cystathionine gamma-synthase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=metB PE=3 SV=1

 Score =  211 bits (537), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 174/304 (57%), Gaps = 13/304 (4%)

Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           IH G  +     T A++ P+  TS Y              R   +EY R GNPT   +EE
Sbjct: 8   IHGG--ISEDATTGAVSVPIYQTSTYRQDAIG--------RHKGYEYSRSGNPTRFALEE 57

Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
            ++ LEG       ASG+ A    + +L+ +G H++   D Y  T      VL K G++ 
Sbjct: 58  LIADLEGGVKGFAFASGL-AGIHAVFSLLQSGDHVLLGDDVYGGTFRLFNQVLVKNGLSC 116

Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
           T+ID +D+  ++ A+  N  +L+  E+P+NP L+  D+   + +    G +  +D TFAT
Sbjct: 117 TIIDTSDISQIKKAIKPNTKALYL-ETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT 175

Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAA 396
           P  Q  L LGAD+V HS TK++GGH+DV+AG ++ + + L  +I    + +GG L P  +
Sbjct: 176 PYYQNPLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDS 235

Query: 397 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 456
           +L+ RG+KTL LR++     AL +A+ LE HPKV+RV+YPGL +HP + +A +QM GF G
Sbjct: 236 WLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSG 295

Query: 457 VVSF 460
           ++SF
Sbjct: 296 MLSF 299

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|P55218|METZ_PSEAE O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=metZ PE=1 SV=1

 Score =  206 bits (525), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/259 (39%), Positives = 159/259 (61%), Gaps = 1/259 (0%)

Query: 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTR 263
           Y RY NPT    EE+++ALEGAE  V  ASGMSA   ++++L  +G H++ +   +  T 
Sbjct: 67  YSRYTNPTVRTFEERIAALEGAEQAVATASGMSAILALVMSLCSSGDHVLVSRSVFGSTI 126

Query: 264 IFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH 323
              +    + GI       +D+   EAA   N   LFF ESP+NP    VD+  ++++ H
Sbjct: 127 SLFDKYFKRFGIQVDYPPLSDLAAWEAACKPNT-KLFFVESPSNPLAELVDIAALAEIAH 185

Query: 324 KKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL 383
            KGA++ +D  F TP  Q+ L LGAD+V+HSATK+I G    + G ++G G+ + ++   
Sbjct: 186 AKGALLAVDNCFCTPALQQPLKLGADVVIHSATKYIDGQGRGMGGVVAGRGEQMKEVVGF 245

Query: 384 HHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPE 443
               G  L+P  A+L ++G++TL +R+Q  +++AL +A+ LE  P ++RV+Y GL SHP+
Sbjct: 246 LRTAGPTLSPFNAWLFLKGLETLRIRMQAHSASALALAEWLERQPGIERVYYAGLPSHPQ 305

Query: 444 HHIATQQMTGFGGVVSFEV 462
           H +A +Q +GFG VVSF+V
Sbjct: 306 HELARRQQSGFGAVVSFDV 324

Catalyzes the formation of L-homocysteine from O-succinyl-L-homoserine (OSHS) and hydrogen sulfide. Can not use the other activated form of L-homoserine, O-acetyl-L-homoserine, as a substrate.

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|P66875|METB_MYCTU Cystathionine gamma-synthase OS=Mycobacterium tuberculosis GN=metB PE=1 SV=1

 Score =  204 bits (519), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 118/314 (37%), Positives = 172/314 (54%), Gaps = 11/314 (3%)

Query: 150 LSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGN 209
           +S   + AIHAG R      T A+  P+  +S +       L       R  FEY R GN
Sbjct: 11  ISGPATRAIHAGYR--PDPATGAVNVPIYASSTFAQDGVGGL-------RGGFEYARTGN 61

Query: 210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV 269
           PT   +E  ++A+E        +SGM+A+   L A++  G H+V   D Y  T   I+ V
Sbjct: 62  PTRAALEASLAAVEEGAFARAFSSGMAATDCALRAMLRPGDHVVIPDDAYGGTFRLIDKV 121

Query: 270 LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV 329
             +  +  T +  AD++ + AA+      L + E+PTNP L   D+  +++L   + A V
Sbjct: 122 FTRWDVQYTPVRLADLDAVGAAITPRT-RLIWVETPTNPLLSIADITAIAELGTDRSAKV 180

Query: 330 CIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLG 388
            +D TFA+P  Q+ L LGAD+VLHS TK+IGGH+DV+ G+ ++   +L  +   L +  G
Sbjct: 181 LVDNTFASPALQQPLRLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDEEFAFLQNGAG 240

Query: 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIAT 448
               P  AYL +RG+KTL LR+Q+ +  A  +A+ L  HP V  V YPGL SHP H IA 
Sbjct: 241 AVPGPFDAYLTMRGLKTLVLRMQRHSENACAVAEFLADHPSVSSVLYPGLPSHPGHEIAA 300

Query: 449 QQMTGFGGVVSFEV 462
           +QM GFGG+VS  +
Sbjct: 301 RQMRGFGGMVSVRM 314

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction (By similarity). In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Mycobacterium tuberculosis (taxid: 1773)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	466
350536179	540	cystathionine gamma synthase [Solanum ly	0.963	0.831	0.746	0.0
8439541	539	cystathionine gamma-synthase isoform 1 [	0.961	0.831	0.744	0.0
8439543	540	cystathionine gamma-synthase isoform 2 [	0.944	0.814	0.732	0.0
5804835	545	cystathionine gamma synthase [Fragaria v	0.980	0.838	0.726	0.0
224141019	532	predicted protein [Populus trichocarpa]	0.959	0.840	0.737	0.0
296082945	497	unnamed protein product [Vitis vinifera]	0.881	0.826	0.712	0.0
225452877	531	PREDICTED: cystathionine gamma-synthase,	0.950	0.834	0.728	0.0
430736214	534	cystathionine gamma-synthase [Cicer arie	0.935	0.816	0.703	0.0
297828634	564	hypothetical protein ARALYDRAFT_477417 [	0.987	0.815	0.694	0.0
430736216	535	cystathionine gamma-synthase [Lens culin	0.944	0.822	0.706	0.0

>gi|350536179|ref|NP_001234489.1| cystathionine gamma synthase [Solanum lycopersicum] gi|40806079|gb|AAR92031.1| cystathionine gamma synthase [Solanum lycopersicum]

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/458 (74%), Positives = 389/458 (84%), Gaps = 9/458 (1%)

Query: 13  SFSSSCSSFECRSDPDFSGSARFDKP--RISAARVIGASTASFSGVSSLIFRFPPNFVRQ 70
           S++ +  SFECRS+PDFSGS    K   R S     G++ +   G+SSLI+RFPPNFVRQ
Sbjct: 5   SYARAFPSFECRSEPDFSGSLPHPKAGVRFSGKYNSGSNRSQVYGLSSLIYRFPPNFVRQ 64

Query: 71  LSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAA-SAAPAPPAPVEITSGDD-IAL 128
           LS KARRNCSNIGVAQ+VAASWSN+      + AA A  S+A A    + IT+GD+ +A+
Sbjct: 65  LSIKARRNCSNIGVAQVVAASWSNNQAGPEFTPAANAVDSSASAAVTSIGITTGDEEVAV 124

Query: 129 VDGL----KNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYF 184
           V+      +NVQ++    +K  ASFL+SDGS+AIHAGERLGRGIVTDAITTPVVNTSAYF
Sbjct: 125 VENADCSDQNVQIKGSTGVK-YASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYF 183

Query: 185 FKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLA 244
           F KT++LIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAEST+I+ASGM ASTVM LA
Sbjct: 184 FNKTSDLIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLIVASGMCASTVMFLA 243

Query: 245 LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTES 304
           LVPAGGHIVTTTDCYRKTR+FIET+LPKMGITATVIDPADM  LE ALN   V LFFTES
Sbjct: 244 LVPAGGHIVTTTDCYRKTRVFIETILPKMGITATVIDPADMGALELALNQKKVDLFFTES 303

Query: 305 PTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHND 364
           PTNPFLRCVD++LVS LC +KGA+VCIDGTFATPLNQKAL+LGADLV+HSATKF+GGHND
Sbjct: 304 PTNPFLRCVDIELVSKLCREKGALVCIDGTFATPLNQKALALGADLVVHSATKFLGGHND 363

Query: 365 VLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKIL 424
           VLAG ISG  KLV+ IRNLHH+LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA+IL
Sbjct: 364 VLAGCISGPEKLVSVIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEIL 423

Query: 425 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           EAHPKVK V+YPGL SHPE+H+A +QMTGFGGVVSFEV
Sbjct: 424 EAHPKVKHVYYPGLPSHPEYHLAKKQMTGFGGVVSFEV 461

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8439541|gb|AAF74981.1|AF082891_1 cystathionine gamma-synthase isoform 1 [Solanum tuberosum]

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/458 (74%), Positives = 385/458 (84%), Gaps = 10/458 (2%)

Query: 13  SFSSSCSSFECRSDPDFSGSARFDKP--RISAARVIGASTASFSGVSSLIFRFPPNFVRQ 70
           S++ +  SFECRS+PDFSGS    K   R S     G++ +   G+SSLIFRFPPNFVRQ
Sbjct: 5   SYARAFPSFECRSEPDFSGSLPHPKAGVRFSGKYNSGSNRSQVYGLSSLIFRFPPNFVRQ 64

Query: 71  LSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAA-SAAPAPPAPVEITSGDD-IAL 128
           LS KARRNCSNIGVAQ+VAASWSN+      + AA A  S+A A    + IT+GD+ +A+
Sbjct: 65  LSIKARRNCSNIGVAQVVAASWSNNQAGPEFTPAANAVDSSASAAVTSIGITAGDEEVAV 124

Query: 129 VDGL----KNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYF 184
           V+      +NVQ+         ASFL+SDGS+AIHAGERLGRGIVTDAITTPVVNTSAYF
Sbjct: 125 VENADCNDQNVQITGTG--VKYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYF 182

Query: 185 FKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLA 244
           F KT++LIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAEST+I+ASGM ASTVM LA
Sbjct: 183 FNKTSDLIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLIVASGMCASTVMFLA 242

Query: 245 LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTES 304
           LVPAGGHIVTTTDCYRKTR+FIET+LPKMGITATVIDPADM  LE  LN   V LFFTES
Sbjct: 243 LVPAGGHIVTTTDCYRKTRVFIETILPKMGITATVIDPADMGALELTLNQKKVDLFFTES 302

Query: 305 PTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHND 364
           PTNPFLRCVD++LVS LC +KGA+VCIDGTFATPLNQKAL+LGADLV+HSATKF+GGHND
Sbjct: 303 PTNPFLRCVDIELVSKLCREKGALVCIDGTFATPLNQKALALGADLVVHSATKFLGGHND 362

Query: 365 VLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKIL 424
           VLAG ISG  KLV+ IRNLHH+LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA+IL
Sbjct: 363 VLAGCISGPEKLVSVIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEIL 422

Query: 425 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           EAHPKVK V+YPGL SHPE+H+A +QMTGFGGVVSFEV
Sbjct: 423 EAHPKVKHVYYPGLPSHPEYHLAKKQMTGFGGVVSFEV 460

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8439543|gb|AAF74982.1|AF082892_1 cystathionine gamma-synthase isoform 2 [Solanum tuberosum]

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/453 (73%), Positives = 382/453 (84%), Gaps = 13/453 (2%)

Query: 20  SFECRSDPDFSGSA-RFDKP----RISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTK 74
           SF+CRSDPDFSG   R D P    R S      +  +S  G+SSLI RFPPNFVRQLS K
Sbjct: 12  SFQCRSDPDFSGGVPRHDLPNAGVRFSVKVKSLSRGSSVHGMSSLILRFPPNFVRQLSVK 71

Query: 75  ARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAAPAPPAPVEITSGDDIALV----- 129
           ARRNCSNIG+AQ+VAASWSN+  S   + AA A  AA    AP +IT+GD+   V     
Sbjct: 72  ARRNCSNIGLAQVVAASWSNNHASPDFTPAAKAVDAASI--APFDITTGDEEGAVVEDSP 129

Query: 130 DGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTA 189
              +NVQ+E L D+K  +SFLSSDGS+AIHAGERLGRGIVTDAITTPVVNTSAYFFKKT+
Sbjct: 130 RADRNVQIEDLTDVKY-SSFLSSDGSIAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTS 188

Query: 190 ELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAG 249
           +LIDFKEK+RASFEYGRYGNPT++V EEK+SALEGA++T++MASGM ASTV+LLALVPAG
Sbjct: 189 DLIDFKEKKRASFEYGRYGNPTSIVAEEKISALEGADATLLMASGMCASTVLLLALVPAG 248

Query: 250 GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPF 309
           GHIVTTTDCYRKTRIFIET+LPKMGITATVIDPAD+  LE+ LN   V+LFFTESPTNPF
Sbjct: 249 GHIVTTTDCYRKTRIFIETILPKMGITATVIDPADIGALESVLNQKKVTLFFTESPTNPF 308

Query: 310 LRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS 369
           LRCVD++LVS LCH+KGA+VCIDGTFATPLNQK L+LGADLV+HSATK++GGHNDVL G 
Sbjct: 309 LRCVDIELVSKLCHEKGALVCIDGTFATPLNQKVLALGADLVVHSATKYLGGHNDVLGGC 368

Query: 370 ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK 429
           ISG  KLV+ +R LHH+LGGA+NPNAAYLIIRGMKTLHLRVQQQNSTA R+A+ILEAHPK
Sbjct: 369 ISGPDKLVSAVRTLHHILGGAINPNAAYLIIRGMKTLHLRVQQQNSTAQRIAEILEAHPK 428

Query: 430 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           V+ V+YPGL SHPE+H+A +QMTGFGGVVSFEV
Sbjct: 429 VRCVYYPGLPSHPEYHLAKRQMTGFGGVVSFEV 461

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5804835|emb|CAA04772.2| cystathionine gamma synthase [Fragaria vesca] gi|6012969|emb|CAB57356.1| cystathionine gamma synthase [Fragaria vesca]

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/471 (72%), Positives = 392/471 (83%), Gaps = 14/471 (2%)

Query: 1   MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFD-KPRISAARVIGASTASFSGVSSL 59
           M V +C   ++ + SSS S++ CR  PD +  A  + +P  +A RV   S A F G+SSL
Sbjct: 1   MGVYTCP--RVFTSSSSSSTYCCRHHPDLATRAAVNPRPGFAAGRV--DSPAPFHGLSSL 56

Query: 60  IFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSN---SVGSGSNSAAATAASAAPAPPA 116
           I RFPPNFVRQLSTKARRNCSNIGVAQIVAASWSN    + +   ++A  AA+ A     
Sbjct: 57  ILRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNKDSDLSAVPAASAVDAAATAADLVV 116

Query: 117 PVEITSGDDIALVDGL-----KNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTD 171
           P +I + DD+A VD         VQL  L DLK +ASFLSSDGS+AIHAGERLGRGIVTD
Sbjct: 117 PAQIGTEDDLAAVDAEYAVFGNGVQLGGLPDLK-DASFLSSDGSIAIHAGERLGRGIVTD 175

Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
           AITTPVVNTSAYFFKKTA+L+DFKEKR  SFEYGRYGNPTTVV+EEK+SALEGAEST+++
Sbjct: 176 AITTPVVNTSAYFFKKTADLLDFKEKRATSFEYGRYGNPTTVVLEEKISALEGAESTLLL 235

Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
           ASGM ASTV+L+ALVPAGGHIVTTTDCYRKTRIFIET+LPKMGITAT+IDPAD+  LE A
Sbjct: 236 ASGMCASTVLLMALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATIIDPADVGALETA 295

Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
           LN N VSLFFTESPTNPFLRCVD+ LVSDLCH KGA+VCI+GTFATP+NQKAL+LGADLV
Sbjct: 296 LNENKVSLFFTESPTNPFLRCVDINLVSDLCHSKGAVVCINGTFATPINQKALALGADLV 355

Query: 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQ 411
           +HSATK++ GHNDVLAG ISGS KLV++IR LHH+LGGALNPNAAYLIIRGMKTLH+R+Q
Sbjct: 356 VHSATKYLAGHNDVLAGCISGSMKLVSEIRILHHILGGALNPNAAYLIIRGMKTLHIRIQ 415

Query: 412 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           QQNSTALRMAKILEAHPKV  V+YPGL SHPEH +A +QMTGFGGVVSFE+
Sbjct: 416 QQNSTALRMAKILEAHPKVAHVYYPGLPSHPEHELAKRQMTGFGGVVSFEI 466

Source: Fragaria vesca

Species: Fragaria vesca

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141019|ref|XP_002323872.1| predicted protein [Populus trichocarpa] gi|222866874|gb|EEF04005.1| predicted protein [Populus trichocarpa]

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/465 (73%), Positives = 386/465 (83%), Gaps = 18/465 (3%)

Query: 1   MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFDKP---RISAARVIGASTASFSGVS 57
           MAVSSC   K+       SSFECRSD     S+  D+P   R ++AR       S +G+S
Sbjct: 1   MAVSSCPCPKLFV----ASSFECRSD----SSSSADQPSQGRSNSARHGTTPFLSGAGMS 52

Query: 58  SLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAAPAPPAP 117
           SLI +FPPNFVRQLSTKARRNCSNIGVAQIVAASWSN+  +G+ SAAA AA+AA A    
Sbjct: 53  SLILKFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNNSAAGAPSAAAAAAAAAAA---- 108

Query: 118 VEITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPV 177
              ++         L   +LE L+      SFLSSDGS+A+HAGERLGRGIVTDAITTPV
Sbjct: 109 ---SAIPAAEPAKTLAGNELEDLSSDLEYKSFLSSDGSIAVHAGERLGRGIVTDAITTPV 165

Query: 178 VNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSA 237
           VNTSAYFFKKT ELIDFKEKR AS+EYGRYGNPTT V+E+K+S LEGAEST+I+ASGM A
Sbjct: 166 VNTSAYFFKKTQELIDFKEKRHASYEYGRYGNPTTQVLEDKISELEGAESTLILASGMCA 225

Query: 238 STVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNV 297
           STV+LLALVPAGGH+VTTTDCYRKTRIF+ET LPKMGIT TVIDPAD++ LE+AL  N V
Sbjct: 226 STVLLLALVPAGGHLVTTTDCYRKTRIFMETFLPKMGITVTVIDPADVKALESALEINKV 285

Query: 298 SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATK 357
           SLFFTESPTNPFLRCVD++LVS+LCH+KGA+VCIDGTFATPLNQKAL+LGADL+LHSATK
Sbjct: 286 SLFFTESPTNPFLRCVDIELVSELCHRKGALVCIDGTFATPLNQKALALGADLILHSATK 345

Query: 358 FIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTA 417
           FIGGHNDVL G ISGS K+V++IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQNSTA
Sbjct: 346 FIGGHNDVLGGCISGSTKVVSEIRNLHHVLGGTLNPNAAYLIIRGMKTLHLRVQQQNSTA 405

Query: 418 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           LRMAKILEAHPKV+ V+YPGL SHPEHHIA +QMTGFGGVVSFEV
Sbjct: 406 LRMAKILEAHPKVRCVYYPGLPSHPEHHIAKKQMTGFGGVVSFEV 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082945|emb|CBI22246.3| unnamed protein product [Vitis vinifera]

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/469 (71%), Positives = 365/469 (77%), Gaps = 58/469 (12%)

Query: 1   MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFDKPRISAARVIGASTA-------SF 53
           MAVSSC            ++FECRS+PDF G     +   S  R  G +++         
Sbjct: 1   MAVSSCPRVS--------AAFECRSEPDFCGGPHRPEAFASGGRFSGKASSVPSHQIFGA 52

Query: 54  SGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAAPA 113
           S +SSLIFRFPPNFVRQLSTKARRNCSNIGVAQ+VAAS                      
Sbjct: 53  SALSSLIFRFPPNFVRQLSTKARRNCSNIGVAQVVAASC--------------------- 91

Query: 114 PPAPVEITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAI 173
                               +VQ E LAD K  ASFL  DG+L IHAGERLGRGIVTDAI
Sbjct: 92  --------------------DVQYEDLADEK--ASFLGFDGTLTIHAGERLGRGIVTDAI 129

Query: 174 TTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMAS 233
           TTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAESTVIMAS
Sbjct: 130 TTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTVIMAS 189

Query: 234 GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALN 293
           GM ASTVMLLALVP GGH+VTTTDCYR+TRIFIET LPK+G+  TVIDPAD E L++AL+
Sbjct: 190 GMCASTVMLLALVPPGGHMVTTTDCYRRTRIFIETFLPKLGVEVTVIDPADTEALKSALD 249

Query: 294 NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLH 353
            NNV+LFFTESPTNPFLRCVD++LVS+LCH+KGA+VCID TFATPLNQK LSLGADLVLH
Sbjct: 250 KNNVTLFFTESPTNPFLRCVDIELVSELCHRKGALVCIDSTFATPLNQKTLSLGADLVLH 309

Query: 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQ 413
           SATK+I GHNDV+AG ISGS KLV+ IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQ
Sbjct: 310 SATKYIAGHNDVIAGCISGSEKLVSTIRNLHHVLGGVLNPNAAYLIIRGMKTLHLRVQQQ 369

Query: 414 NSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           NSTALRMAKILEAHPKVK V+YPGL SHPEHHIA +QMTGFGGVVSFEV
Sbjct: 370 NSTALRMAKILEAHPKVKCVYYPGLPSHPEHHIAKRQMTGFGGVVSFEV 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452877|ref|XP_002283866.1| PREDICTED: cystathionine gamma-synthase, chloroplastic-like [Vitis vinifera]

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/471 (72%), Positives = 381/471 (80%), Gaps = 28/471 (5%)

Query: 1   MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFDKPRISAARVIGASTA-------SF 53
           MAVSSC            ++FECRS+PDF G     +   S  R  G +++         
Sbjct: 1   MAVSSCPRVS--------AAFECRSEPDFCGGPHRPEAFASGGRFSGKASSVPSHQIFGA 52

Query: 54  SGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAAPA 113
           S +SSLIFRFPPNFVRQLSTKARRNCSNIGVAQ+VAASWS    + + ++A+ AA+A+  
Sbjct: 53  SALSSLIFRFPPNFVRQLSTKARRNCSNIGVAQVVAASWSADSAAAAAASASAAAAASVE 112

Query: 114 PPAPVEITS--GDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTD 171
               V +    G D         VQ E LAD K  ASFL  DG+L IHAGERLGRGIVTD
Sbjct: 113 ASVEVSVVESSGSD---------VQYEDLADEK--ASFLGFDGTLTIHAGERLGRGIVTD 161

Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
           AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAESTVIM
Sbjct: 162 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTVIM 221

Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
           ASGM ASTVMLLALVP GGH+VTTTDCYR+TRIFIET LPK+G+  TVIDPAD E L++A
Sbjct: 222 ASGMCASTVMLLALVPPGGHMVTTTDCYRRTRIFIETFLPKLGVEVTVIDPADTEALKSA 281

Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
           L+ NNV+LFFTESPTNPFLRCVD++LVS+LCH+KGA+VCID TFATPLNQK LSLGADLV
Sbjct: 282 LDKNNVTLFFTESPTNPFLRCVDIELVSELCHRKGALVCIDSTFATPLNQKTLSLGADLV 341

Query: 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQ 411
           LHSATK+I GHNDV+AG ISGS KLV+ IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQ
Sbjct: 342 LHSATKYIAGHNDVIAGCISGSEKLVSTIRNLHHVLGGVLNPNAAYLIIRGMKTLHLRVQ 401

Query: 412 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           QQNSTALRMAKILEAHPKVK V+YPGL SHPEHHIA +QMTGFGGVVSFEV
Sbjct: 402 QQNSTALRMAKILEAHPKVKCVYYPGLPSHPEHHIAKRQMTGFGGVVSFEV 452

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|430736214|gb|AGA60136.1| cystathionine gamma-synthase [Cicer arietinum]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/452 (70%), Positives = 365/452 (80%), Gaps = 16/452 (3%)

Query: 20  SFECRSDPDFSGSARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNC 79
           +FECRSDPDF+    FD  R         S A F   SS I RFPPNF RQLSTKARRNC
Sbjct: 11  TFECRSDPDFASLPSFDNRRTRHFPTAAVSVA-FYAASSPILRFPPNFQRQLSTKARRNC 69

Query: 80  SNIGVAQIVAASWSNSVGSGSNSA---------AATAASAAPAPPAPVEITSGDDIALVD 130
           SNIGVAQIVAASWSN  GSG+ +A         +   A+ AP PP  ++  + +++  VD
Sbjct: 70  SNIGVAQIVAASWSNE-GSGNPAAGAPPVPAVASTVDATTAP-PPLDLDAVADENVVAVD 127

Query: 131 GLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAE 190
               VQ     +  + + FL SD S  IHA ERLGRGIVTD ITTPVVNTSAYFFKKTA+
Sbjct: 128 ENGAVQ----TNRSSYSKFLKSDASKTIHAAERLGRGIVTDGITTPVVNTSAYFFKKTAD 183

Query: 191 LIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGG 250
           LIDFKEKR+ S+EYGRYGNPT+ V+EEK+S LEGAESTV+MASGM AS V+L+ALVPAGG
Sbjct: 184 LIDFKEKRQTSYEYGRYGNPTSTVLEEKISELEGAESTVLMASGMCASIVLLMALVPAGG 243

Query: 251 HIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 310
           H+VTTTDCYRKTRIFIETVLPKMGIT TV+DPAD+  LE+AL  NNVSLFFTESPTNPFL
Sbjct: 244 HLVTTTDCYRKTRIFIETVLPKMGITTTVVDPADVGALESALEQNNVSLFFTESPTNPFL 303

Query: 311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI 370
           RCVD+KLVS+LCHK GA++CIDGTFATPLNQKAL+LGADL++HS TK++GGH+DVL G I
Sbjct: 304 RCVDIKLVSELCHKHGALLCIDGTFATPLNQKALALGADLIMHSCTKYMGGHHDVLGGCI 363

Query: 371 SGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKV 430
           SGS KL++QIR LHH+LGGALNPNAAYL IRGMKTLHLRVQQQNST +RMAK+LEAHPKV
Sbjct: 364 SGSDKLISQIRILHHILGGALNPNAAYLFIRGMKTLHLRVQQQNSTGMRMAKLLEAHPKV 423

Query: 431 KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           KRV+YPGL SHPEH +A +QMTGFGGVVSFE+
Sbjct: 424 KRVYYPGLPSHPEHELAMRQMTGFGGVVSFEI 455

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828634|ref|XP_002882199.1| hypothetical protein ARALYDRAFT_477417 [Arabidopsis lyrata subsp. lyrata] gi|297328039|gb|EFH58458.1| hypothetical protein ARALYDRAFT_477417 [Arabidopsis lyrata subsp. lyrata]

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/487 (69%), Positives = 387/487 (79%), Gaps = 27/487 (5%)

Query: 1   MAVSSCSSQKILSFSSSCSSFECRSDPDFSGS--ARFDKPRISAARVIGASTASFSGVSS 58
           MAVSS     I S SS  S F+CRSDPD  GS      + R++A   I +S     G+SS
Sbjct: 1   MAVSSFQCPTIFSSSSI-SGFQCRSDPDLVGSPVGGSSRRRVNATAGISSSFTGDGGLSS 59

Query: 59  LIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSG------------------- 99
            I RFPPNFVRQLS KARRNCSNIGVAQIVAA WSN+  SG                   
Sbjct: 60  RILRFPPNFVRQLSIKARRNCSNIGVAQIVAAKWSNNPSSGLPSAAAAAAASSASAVSSA 119

Query: 100 --SNSAAATAASAAPAPPAPVEITSGDDIALV--DGLKNVQLEALADLKNEASFLSSDGS 155
             + +A++ AA+   A P  V + S D+  +V  +G++  ++ ++    ++ SFLSSDGS
Sbjct: 120 ASAATASSAAAAPEAAAPPVVVLKSVDEEVVVAKEGIRE-KIGSVQLTDSKHSFLSSDGS 178

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
           L +HAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR  SFEYGRYGNPTTVV+
Sbjct: 179 LTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRSVSFEYGRYGNPTTVVL 238

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           EEK+SALEGAEST++MASGM ASTVMLLALVPAGGHIVTTTDCYRKTRIF+E  LPK+GI
Sbjct: 239 EEKISALEGAESTLVMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFMENFLPKLGI 298

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
           T TVIDPAD+ GLEAA+N   VSLFFTESPTNPFLRCVD++LVS++CHK+G +VCIDGTF
Sbjct: 299 TVTVIDPADIAGLEAAVNEFKVSLFFTESPTNPFLRCVDIELVSEICHKRGTLVCIDGTF 358

Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNA 395
           ATPLNQKAL+LGADLV+HSATK+IGGHNDVLAG I GS KLV++IRNLHHVLGG LNPNA
Sbjct: 359 ATPLNQKALALGADLVVHSATKYIGGHNDVLAGCICGSLKLVSEIRNLHHVLGGTLNPNA 418

Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 455
           AYLIIRGMKTLHLRVQQQNSTA RMA+ILEAHPKV  V+YPGL SHPEH +A +QMTGFG
Sbjct: 419 AYLIIRGMKTLHLRVQQQNSTAFRMAEILEAHPKVSHVYYPGLASHPEHELAKRQMTGFG 478

Query: 456 GVVSFEV 462
           GVVSFE+
Sbjct: 479 GVVSFEI 485

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|430736216|gb|AGA60137.1| cystathionine gamma-synthase [Lens culinaris]

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/449 (70%), Positives = 370/449 (82%), Gaps = 9/449 (2%)

Query: 20  SFECRSDPDFSGSARFDKPRISAARVIGAS-TASFSGVSSLIFRFPPNFVRQLSTKARRN 78
           +FECRSDPDF+     +  R +      A  +A+F GVSS I RFPPNF RQLSTKARRN
Sbjct: 11  TFECRSDPDFASLPSTENLRSTPRHFPAAGLSAAFYGVSSPILRFPPNFQRQLSTKARRN 70

Query: 79  CSNIGVAQIVAASWSNSVGSGSNSAAAT----AASAAPAPPAPVEITSG-DDIALVDGLK 133
           CSNIGVAQIVAASWSN  G+GS +A A      ASA  A  AP+ +  G DD ++VD  K
Sbjct: 71  CSNIGVAQIVAASWSNE-GAGSPAAGANPVPAVASAVDAATAPLPVDLGADDESVVDAGK 129

Query: 134 NVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELID 193
           N  ++   +  + +SFL +D S  IHA ERLGR IVTDAITTPVVNTSAYFFKKTA+LID
Sbjct: 130 NGAVQT--NRSSYSSFLKTDASKTIHAAERLGRAIVTDAITTPVVNTSAYFFKKTADLID 187

Query: 194 FKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIV 253
           +KEKR AS+EYGRYGNPT+ V+EEK+S LEGAESTV++ASGM AS V+L+AL+PAGGH+V
Sbjct: 188 YKEKRLASYEYGRYGNPTSTVLEEKLSELEGAESTVLLASGMCASIVLLMALIPAGGHLV 247

Query: 254 TTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV 313
           TTTDCYRKTR+FIETVLPKMGITA+VIDPAD+  LE+AL  N VSLFFTESPTNPFLRCV
Sbjct: 248 TTTDCYRKTRVFIETVLPKMGITASVIDPADVGALESALEQNKVSLFFTESPTNPFLRCV 307

Query: 314 DVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS 373
           D+KLVS+LCHK GA++CIDGTFATPLNQKAL+LGADLV+HS TK+IGGH+DV+ G ISGS
Sbjct: 308 DIKLVSELCHKNGALLCIDGTFATPLNQKALALGADLVMHSCTKYIGGHHDVIGGCISGS 367

Query: 374 GKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRV 433
            KL+++IR LHH+LGG LNPNAAYL IRG+KTLHLRVQQQNST + MAK LEAHPKVKRV
Sbjct: 368 DKLISEIRILHHILGGVLNPNAAYLFIRGLKTLHLRVQQQNSTGMGMAKFLEAHPKVKRV 427

Query: 434 HYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           +YPGL SHPEH +A +QMTGFGGVVSFE+
Sbjct: 428 YYPGLPSHPEHELAMRQMTGFGGVVSFEI 456

Source: Lens culinaris

Species: Lens culinaris

Genus: Lens

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	466
TAIR|locus:2102072	563	MTO1 "METHIONINE OVERACCUMULAT	0.736	0.609	0.790	1.4e-159
TAIR|locus:2006887	412	AT1G33320 [Arabidopsis thalian	0.648	0.733	0.705	1e-114
UNIPROTKB|Q4KA19	424	mdeA "Methionine gamma-lyase"	0.673	0.740	0.401	1.9e-58
UNIPROTKB|Q81LL6	377	BAS4268 "Cys/Met metabolism PL	0.628	0.777	0.392	6.8e-56
TIGR_CMR|BA_4600	377	BA_4600 "cystathionine beta-ly	0.628	0.777	0.392	6.8e-56
UNIPROTKB|Q8EG02	397	mdeA "Methionine gamma-lyase M	0.675	0.793	0.363	3.5e-52
TIGR_CMR|SO_1812	397	SO_1812 "methionine gamma-lyas	0.675	0.793	0.363	3.5e-52
TIGR_CMR|SPO_A0318	400	SPO_A0318 "methionine gamma-ly	0.618	0.72	0.383	2.2e-50
TIGR_CMR|SPO_0413	403	SPO_0413 "Cys/Met metabolism P	0.645	0.746	0.359	5.8e-50
DICTYBASE|DDB_G0269122	387	cysA "cystathionine gamma-lyas	0.639	0.770	0.345	3.2e-49

TAIR|locus:2102072 MTO1 "METHIONINE OVERACCUMULATION 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1405 (499.6 bits), Expect = 1.4e-159, Sum P(2) = 1.4e-159
 Identities = 275/348 (79%), Positives = 308/348 (88%)

Query:   118 VEITSGDDIALV--DGLKN-VQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAIT 174
             V + S D+  +V  +G++  +    L D K+  SFLSSDGSL +HAGERLGRGIVTDAIT
Sbjct:   139 VVLKSVDEEVVVAEEGIREKIGSVQLTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAIT 196

Query:   175 TPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASG 234
             TPVVNTSAYFFKKTAELIDFKEKR  SFEYGRYGNPTTVV+E+K+SALEGAEST++MASG
Sbjct:   197 TPVVNTSAYFFKKTAELIDFKEKRSVSFEYGRYGNPTTVVLEDKISALEGAESTLVMASG 256

Query:   235 MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNN 294
             M ASTVMLLALVPAGGHIVTTTDCYRKTRIF+E  LPK+GIT TVIDPAD+ GLEAA+N 
Sbjct:   257 MCASTVMLLALVPAGGHIVTTTDCYRKTRIFMENFLPKLGITVTVIDPADIAGLEAAVNE 316

Query:   295 NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHS 354
               VSLFFTESPTNPFLRCVD++LVS +CHK+G +VCIDGTFATPLNQKAL+LGADLV+HS
Sbjct:   317 FKVSLFFTESPTNPFLRCVDIELVSKICHKRGTLVCIDGTFATPLNQKALALGADLVVHS 376

Query:   355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 414
             ATK+IGGHNDVLAG I GS KLV++IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQN
Sbjct:   377 ATKYIGGHNDVLAGCICGSLKLVSEIRNLHHVLGGTLNPNAAYLIIRGMKTLHLRVQQQN 436

Query:   415 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
             STA RMA+ILEAHPKV  V+YPGL SHPEH +A +QMTGFGGVVSFE+
Sbjct:   437 STAFRMAEILEAHPKVSHVYYPGLPSHPEHELAKRQMTGFGGVVSFEI 484

GO:0003824 "catalytic activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IMP

GO:0001887 "selenium compound metabolic process" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006730 "one-carbon metabolic process" evidence=RCA

GO:0003962 "cystathionine gamma-synthase activity" evidence=ISS;IDA

TAIR|locus:2006887 AT1G33320 [Arabidopsis thaliana (taxid:3702)]

 Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
 Identities = 213/302 (70%), Positives = 254/302 (84%)

Query:   161 GERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMS 220
             GERL R + T +ITT VVNT+ YFFK T ELIDFKEKR   +EY RYGNPTT+ +EEK+S
Sbjct:    33 GERLRRDMKTSSITTLVVNTTTYFFKDTTELIDFKEKRIDLYEYARYGNPTTMALEEKIS 92

Query:   221 ALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280
              LEGAEST++MASGM AS VMLLALVP  GHIV T DCY++TRIF+E  L K+GIT T I
Sbjct:    93 VLEGAESTLVMASGMYASNVMLLALVPTNGHIVATKDCYKETRIFMENFLTKLGITVTFI 152

Query:   281 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN 340
             D  D+ GL+  +NN+ VSLFFTESPTNPFLRCVD+KLVS +CH++G +VCID T ATP+N
Sbjct:   153 DSDDIAGLQTLVNNHEVSLFFTESPTNPFLRCVDIKLVSKICHRRGTLVCIDATIATPIN 212

Query:   341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII 400
             QK L+LGADLV HSATK+IGGHND LAGSISGS +LV++IRNLH +LGG LNPNAAYL+I
Sbjct:   213 QKTLALGADLVHHSATKYIGGHNDFLAGSISGSMELVSKIRNLHKLLGGTLNPNAAYLLI 272

Query:   401 RGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF 460
             RGMKT+HLRV+QQNST ++MA++LEAHPKV RV+Y GL SHPEH IA +QMTG GG++SF
Sbjct:   273 RGMKTMHLRVRQQNSTGMKMAQVLEAHPKVSRVYYLGLPSHPEHLIAKRQMTGIGGLISF 332

Query:   461 EV 462
             E+
Sbjct:   333 EI 334

GO:0003824 "catalytic activity" evidence=IEA

GO:0003962 "cystathionine gamma-synthase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q4KA19 mdeA "Methionine gamma-lyase" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 128/319 (40%), Positives = 190/319 (59%)

Query:   144 KNEASFLSSDGSLA--IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRAS 201
             K E + L + G+    +  GE++      +A   P+V ++AY +    +  D    +   
Sbjct:     4 KPERTGLENPGTATRVVWGGEQVRHPY--NATQPPIVASAAYGYDDIDQWYDVALGKAPG 61

Query:   202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
             F Y R  NPT   +E K+  LE AES V  +SGM+A + +L + +  G  +V+T D Y  
Sbjct:    62 FIYSRMSNPTVQTLEAKLQDLENAESAVAFSSGMAAISGVLYSFLRHGQRVVSTKDSYGG 121

Query:   262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
             T    E  LP+MG+  T+ +  D + +EA +      L + E+PTNP L+ VD++ +   
Sbjct:   122 TNKIFEEFLPRMGVAVTLCETFDQQQIEAEIAKG-CDLLYLETPTNPTLKIVDIQRLVAA 180

Query:   322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR 381
               + GA+V  D TFATPLNQ  L+LG D+V+HSATKF+ GH DVL G   GS  L++Q+R
Sbjct:   181 AKQVGALVVADNTFATPLNQNPLALGVDVVIHSATKFLSGHGDVLGGVACGSEALMSQVR 240

Query:   382 NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSH 441
             +   + G +L+P +AYLIIRG+KTL LR++QQ  +A ++A+ L   P V+ V+YPGL +H
Sbjct:   241 HYREINGASLDPFSAYLIIRGIKTLALRMRQQQHSAAQLAQFLLNEPLVEAVNYPGLPNH 300

Query:   442 PEHHIATQQMTGFGGVVSF 460
             P H +A  QM GFG +VSF
Sbjct:   301 PNHAVACAQMRGFGAIVSF 319

GO:0018826 "methionine gamma-lyase activity" evidence=ISS

UNIPROTKB|Q81LL6 BAS4268 "Cys/Met metabolism PLP-dependent enzyme" [Bacillus anthracis (taxid:1392)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 120/306 (39%), Positives = 182/306 (59%)

Query:   158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
             IH G R+G    T ++  P+  TS Y  K+ A        +   +EY R GNPT   +EE
Sbjct:     8 IH-GIRIGEPS-TGSVNVPIYQTSTY--KQEAV------GKHQGYEYSRTGNPTRAALEE 57

Query:   218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
              ++ LE   +     SGM+A T  ++ L   G H++ T D Y  T   I  VL + GI  
Sbjct:    58 MIAVLENGHAGFAFGSGMAAITATIM-LFSKGDHVILTDDVYGGTYRVITKVLNRFGIEH 116

Query:   278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
             T +D  ++E +E A+  N  +++  E+PTNP L+  D+K +S L  +KG +  ID TF T
Sbjct:   117 TFVDTTNLEEVEEAIRPNTKAIY-VETPTNPLLKITDIKKISTLAKEKGLLTIIDNTFMT 175

Query:   338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAA 396
             P  Q  +SLGAD+VLHSATK++GGH+DV+AG +   S +L   +  + +  GG L P  +
Sbjct:   176 PYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPQLAEDLHFVQNSTGGILGPQDS 235

Query:   397 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 456
             +L++RG+KTL +R+++  + +  +A+ L  HPKV +V+YPGL SH  H +AT+Q  GFG 
Sbjct:   236 FLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPKVNKVYYPGLASHQNHELATEQANGFGA 295

Query:   457 VVSFEV 462
             ++SF+V
Sbjct:   296 IISFDV 301

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|BA_4600 BA_4600 "cystathionine beta-lyase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 120/306 (39%), Positives = 182/306 (59%)

Query:   158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
             IH G R+G    T ++  P+  TS Y  K+ A        +   +EY R GNPT   +EE
Sbjct:     8 IH-GIRIGEPS-TGSVNVPIYQTSTY--KQEAV------GKHQGYEYSRTGNPTRAALEE 57

Query:   218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
              ++ LE   +     SGM+A T  ++ L   G H++ T D Y  T   I  VL + GI  
Sbjct:    58 MIAVLENGHAGFAFGSGMAAITATIM-LFSKGDHVILTDDVYGGTYRVITKVLNRFGIEH 116

Query:   278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
             T +D  ++E +E A+  N  +++  E+PTNP L+  D+K +S L  +KG +  ID TF T
Sbjct:   117 TFVDTTNLEEVEEAIRPNTKAIY-VETPTNPLLKITDIKKISTLAKEKGLLTIIDNTFMT 175

Query:   338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAA 396
             P  Q  +SLGAD+VLHSATK++GGH+DV+AG +   S +L   +  + +  GG L P  +
Sbjct:   176 PYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPQLAEDLHFVQNSTGGILGPQDS 235

Query:   397 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 456
             +L++RG+KTL +R+++  + +  +A+ L  HPKV +V+YPGL SH  H +AT+Q  GFG 
Sbjct:   236 FLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPKVNKVYYPGLASHQNHELATEQANGFGA 295

Query:   457 VVSFEV 462
             ++SF+V
Sbjct:   296 IISFDV 301

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

UNIPROTKB|Q8EG02 mdeA "Methionine gamma-lyase MdeA" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 117/322 (36%), Positives = 187/322 (58%)

Query:   143 LKNEASFLSSDGSLAIHAG-ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRAS 201
             +++++S +    + AIHAG ER   G    ++ TP+  T+ + F    +  +        
Sbjct:     1 MQDKSSKMWKAATQAIHAGHEREAFG----SLVTPLYQTATFVFDSAQQGGERFAGNEPG 56

Query:   202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
             + Y R GNPT   +E KM+ LE AE+    ASGM A +  LLA +  G H+V +   Y  
Sbjct:    57 YIYTRLGNPTVAELERKMAILERAEAAAATASGMGAVSAALLANLQIGDHLVASNAVYGC 116

Query:   262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
             T   +     + GI  T++D +D+E +E A+  N   + F E+P NP L+  D+  ++ +
Sbjct:   117 TFALMTNQFARFGIEVTLVDFSDVELIERAIKPNT-KVIFCETPVNPHLQVFDLSAIAAI 175

Query:   322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR 381
               +      +D TF TPL Q+ ++LG D+V+HSATK++ GH DV+AG + GS   + +++
Sbjct:   176 AKRHSLTSIVDNTFMTPLLQQPIALGIDVVVHSATKYLNGHGDVIAGIVCGSEAQLHRVK 235

Query:   382 -NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKS 440
               +   +G  ++P+ A+LI+RG+KTL +R+Q+   +A R+A+ LE HP V RV+YPGLKS
Sbjct:   236 YEILKDIGAVMSPHDAWLILRGLKTLDVRLQRHCESAQRVAEFLEQHPAVTRVYYPGLKS 295

Query:   441 HPEHHIATQQMTGFGGVVSFEV 462
             H  H    QQM   GGV++FE+
Sbjct:   296 HSGHRFIGQQMRRAGGVIAFEL 317

GO:0018826 "methionine gamma-lyase activity" evidence=ISS

TIGR_CMR|SO_1812 SO_1812 "methionine gamma-lyase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 117/322 (36%), Positives = 187/322 (58%)

Query:   143 LKNEASFLSSDGSLAIHAG-ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRAS 201
             +++++S +    + AIHAG ER   G    ++ TP+  T+ + F    +  +        
Sbjct:     1 MQDKSSKMWKAATQAIHAGHEREAFG----SLVTPLYQTATFVFDSAQQGGERFAGNEPG 56

Query:   202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
             + Y R GNPT   +E KM+ LE AE+    ASGM A +  LLA +  G H+V +   Y  
Sbjct:    57 YIYTRLGNPTVAELERKMAILERAEAAAATASGMGAVSAALLANLQIGDHLVASNAVYGC 116

Query:   262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
             T   +     + GI  T++D +D+E +E A+  N   + F E+P NP L+  D+  ++ +
Sbjct:   117 TFALMTNQFARFGIEVTLVDFSDVELIERAIKPNT-KVIFCETPVNPHLQVFDLSAIAAI 175

Query:   322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR 381
               +      +D TF TPL Q+ ++LG D+V+HSATK++ GH DV+AG + GS   + +++
Sbjct:   176 AKRHSLTSIVDNTFMTPLLQQPIALGIDVVVHSATKYLNGHGDVIAGIVCGSEAQLHRVK 235

Query:   382 -NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKS 440
               +   +G  ++P+ A+LI+RG+KTL +R+Q+   +A R+A+ LE HP V RV+YPGLKS
Sbjct:   236 YEILKDIGAVMSPHDAWLILRGLKTLDVRLQRHCESAQRVAEFLEQHPAVTRVYYPGLKS 295

Query:   441 HPEHHIATQQMTGFGGVVSFEV 462
             H  H    QQM   GGV++FE+
Sbjct:   296 HSGHRFIGQQMRRAGGVIAFEL 317

GO:0018826 "methionine gamma-lyase activity" evidence=ISS

TIGR_CMR|SPO_A0318 SPO_A0318 "methionine gamma-lyase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 113/295 (38%), Positives = 180/295 (61%)

Query:   172 AITTPVVNTSAYFFKKTAELID--FKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV 229
             A+T P+  TS + F+ TAE     F  +R+    Y R  NPT  ++E++++ LEGAE+ +
Sbjct:    24 ALTPPLHLTSTFAFE-TAEAGGEMFAGERQGHI-YSRISNPTLDLLEQRIATLEGAEAGL 81

Query:   230 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE 289
              ++SGM A T +L  L+  G  ++     Y  T  ++   L K G+T T +D  D E L+
Sbjct:    82 ALSSGMGAITAVLWTLLSPGDEVIVDKTLYGCTFSYMRHGLAKWGVTITHVDLTDPENLK 141

Query:   290 AALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGAD 349
              A+++    ++F E+P NP +R VD+  VS++ H   A V +D T+ATP   + + +GAD
Sbjct:   142 TAISDKTRVVYF-ETPANPNMRLVDIAAVSEIAHGASASVVVDNTYATPYLTRPIEMGAD 200

Query:   350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLH 407
             +VLHSATK++GGH DV+AG + G  + +++IR   +  + G  + P  A LI+RG+KTL 
Sbjct:   201 IVLHSATKYLGGHGDVVAGLVVGGAEQISEIRLYGMKDMTGAVMAPFNAMLILRGLKTLA 260

Query:   408 LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
             LR+ +  ++A  +A+ L AHP V  VH+PGL S  +H +A QQM   G +++FE+
Sbjct:   261 LRMDRHCASAQVVAEWLAAHPAVGEVHFPGLTSFSQHALANQQMAQPGAMIAFEL 315

GO:0009087 "methionine catabolic process" evidence=ISS

GO:0009093 "cysteine catabolic process" evidence=ISS

GO:0018826 "methionine gamma-lyase activity" evidence=ISS

TIGR_CMR|SPO_0413 SPO_0413 "Cys/Met metabolism PLP-dependent enzyme family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 111/309 (35%), Positives = 174/309 (56%)

Query:   157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
             AIHAGE      +  A   P+  +S Y  +            ++ + Y R+ NPT  ++E
Sbjct:    14 AIHAGEAPDPATLASA--PPIHMSSTYVSEDVLGFSAHDLTPQSPYAYSRWANPTVAMLE 71

Query:   217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
              K++A++G E+ +  ASGM+A+  +    + AG H++ +   Y          LP+MGI 
Sbjct:    72 AKIAAMQGTEACLCTASGMAAAAAIFFTFLSAGDHVIVSDVSYAGVAELARDTLPRMGIA 131

Query:   277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
              + +D +D+  + AA+      L  TE+P NP  R  D+  +S L  + GA++  D TFA
Sbjct:   132 VSTVDMSDLAAVAAAIRPET-RLIHTETPVNPIGRLTDLAAISALARQAGALLSCDATFA 190

Query:   337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR---NLHHVLGGALNP 393
             +PL    ++LG DL +HS TK+I GH D +AG++ G   LV+++R    +HH  GG L+P
Sbjct:   191 SPLGMDTVALGVDLTMHSVTKYICGHGDAVAGAVCGRADLVSRMRVEAAIHH--GGVLSP 248

Query:   394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 453
               A+LI RG  TL LR++   + A  +A+ LEA P+V RV YPGL SHP+  +A +QM+ 
Sbjct:   249 FNAWLIARGAATLPLRMKAHAAGAHAVAEWLEADPRVGRVIYPGLPSHPQAELAARQMSN 308

Query:   454 FGGVVSFEV 462
                ++SF+V
Sbjct:   309 MSAMISFQV 317

GO:0003824 "catalytic activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

DICTYBASE|DDB_G0269122 cysA "cystathionine gamma-lyase" [Dictyostelium discoideum (taxid:44689)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 107/310 (34%), Positives = 177/310 (57%)

Query:   154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
             G+  IHAG+   +   T A+  P+ + S  F + +  ++       + ++Y R GNPT  
Sbjct:    10 GTNVIHAGQSADKN--TGAVIVPI-SLSTTFLQPSPGVL------HSEYDYSRSGNPTRK 60

Query:   214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
               EE ++A E A+  +  ASG++  T  +  L+ +G  +++  D Y  TR +   V    
Sbjct:    61 AFEECIAACENAKYALSFASGLATLTT-ITHLLKSGDEVISIDDVYGGTRRYFTRVAANF 119

Query:   274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
              +  + +D + ++ L+ A  +    L + E+PTNP L+  D+K V+D  H +GA + +D 
Sbjct:   120 DLKFSFVDLSTLDDLKNAFTDKT-RLVWIETPTNPLLKVADIKAVADYVHSRGATLVVDN 178

Query:   334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALN 392
             TF +P  Q  L LGAD+V+HS TK+I GH+D + G ++  + +L  +++ L + +G   +
Sbjct:   179 TFMSPYFQNPLDLGADIVMHSVTKYINGHSDCVMGVLATNNDELYAKLKFLQNSIGAVPS 238

Query:   393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 452
             P   +L +RG+KTLH+R++     A  +   LE HPKV+RV YPGL SHP+H I  +QM 
Sbjct:   239 PFDCFLALRGLKTLHVRMEAHQKNAFAICNFLEKHPKVERVIYPGLPSHPQHEICKRQMK 298

Query:   453 GFGGVVSFEV 462
             G+GG+V F V
Sbjct:   299 GYGGMVVFFV 308

GO:0005615 "extracellular space" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0080146 "L-cysteine desulfhydrase activity" evidence=IEA

GO:0044540 "L-cystine L-cysteine-lyase (deaminating)" evidence=IEA

GO:0004123 "cystathionine gamma-lyase activity" evidence=IEA;ISS

GO:0006534 "cysteine metabolic process" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0019344 "cysteine biosynthetic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P55217	METB_ARATH	2, ., 5, ., 1, ., 4, 8	0.8359	0.6888	0.5701	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.1.99.2	LOW CONFIDENCE prediction!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	466
pfam01053	382	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP	1e-141
cd00614	369	cd00614, CGS_like, CGS_like: Cystathionine gamma-s	1e-137
COG0626	396	COG0626, MetC, Cystathionine beta-lyases/cystathio	1e-119
PRK08249	398	PRK08249, PRK08249, cystathionine gamma-synthase;	1e-101
PRK06460	376	PRK06460, PRK06460, hypothetical protein; Provisio	4e-85
PRK08133	390	PRK08133, PRK08133, O-succinylhomoserine sulfhydry	3e-82
PRK07671	377	PRK07671, PRK07671, cystathionine beta-lyase; Prov	1e-80
PRK06234	400	PRK06234, PRK06234, methionine gamma-lyase; Provis	1e-79
TIGR01325	381	TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sul	1e-78
PRK07811	388	PRK07811, PRK07811, cystathionine gamma-synthase;	2e-78
COG2873	426	COG2873, MET17, O-acetylhomoserine sulfhydrylase [	5e-78
TIGR01328	391	TIGR01328, met_gam_lyase, methionine gamma-lyase	3e-74
TIGR01326	418	TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase	1e-73
PRK08064	390	PRK08064, PRK08064, cystathionine beta-lyase; Prov	8e-73
PRK06176	380	PRK06176, PRK06176, cystathionine gamma-synthase/c	2e-71
PRK07503	403	PRK07503, PRK07503, methionine gamma-lyase; Provis	5e-71
PRK05968	389	PRK05968, PRK05968, hypothetical protein; Provisio	1e-70
PRK07504	398	PRK07504, PRK07504, O-succinylhomoserine sulfhydry	2e-69
PRK08574	385	PRK08574, PRK08574, cystathionine gamma-synthase;	2e-69
PRK07582	366	PRK07582, PRK07582, cystathionine gamma-lyase; Val	2e-68
PRK07810	403	PRK07810, PRK07810, O-succinylhomoserine sulfhydry	1e-67
TIGR02080	382	TIGR02080, O_succ_thio_ly, O-succinylhomoserine (t	2e-67
PRK06767	386	PRK06767, PRK06767, methionine gamma-lyase; Provis	9e-67
PRK05939	397	PRK05939, PRK05939, hypothetical protein; Provisio	8e-66
PRK06434	384	PRK06434, PRK06434, cystathionine gamma-lyase; Val	4e-64
PRK08247	366	PRK08247, PRK08247, cystathionine gamma-synthase;	5e-61
PRK05967	395	PRK05967, PRK05967, cystathionine beta-lyase; Prov	9e-61
PRK08248	431	PRK08248, PRK08248, O-acetylhomoserine aminocarbox	8e-60
TIGR01329	378	TIGR01329, cysta_beta_ly_E, cystathionine beta-lya	5e-59
PRK08134	433	PRK08134, PRK08134, O-acetylhomoserine aminocarbox	3e-58
PRK08045	386	PRK08045, PRK08045, cystathionine gamma-synthase;	3e-57
PRK07812	436	PRK07812, PRK07812, O-acetylhomoserine aminocarbox	4e-57
TIGR01324	377	TIGR01324, cysta_beta_ly_B, cystathionine beta-lya	6e-56
PRK08776	405	PRK08776, PRK08776, cystathionine gamma-synthase;	1e-55
PRK07049	427	PRK07049, PRK07049, methionine gamma-lyase; Valida	3e-55
PRK09028	394	PRK09028, PRK09028, cystathionine beta-lyase; Prov	1e-53
PRK06084	425	PRK06084, PRK06084, O-acetylhomoserine aminocarbox	2e-52
PLN02509	464	PLN02509, PLN02509, cystathionine beta-lyase	1e-51
PRK08861	388	PRK08861, PRK08861, cystathionine gamma-synthase;	2e-51
PLN02242	418	PLN02242, PLN02242, methionine gamma-lyase	8e-51
PRK05613	437	PRK05613, PRK05613, O-acetylhomoserine aminocarbox	2e-46
PRK07269	364	PRK07269, PRK07269, cystathionine gamma-synthase;	9e-46
PRK07050	394	PRK07050, PRK07050, cystathionine beta-lyase; Prov	5e-44
PRK05994	427	PRK05994, PRK05994, O-acetylhomoserine aminocarbox	1e-41
PRK08114	395	PRK08114, PRK08114, cystathionine beta-lyase; Prov	4e-39
PRK06702	432	PRK06702, PRK06702, O-acetylhomoserine aminocarbox	7e-34
COG1921	395	COG1921, SelA, Selenocysteine synthase [seryl-tRNA	2e-06
cd00615	294	cd00615, Orn_deC_like, Ornithine decarboxylase fam	7e-06
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	5e-05
pfam03841	367	pfam03841, SelA, L-seryl-tRNA selenium transferase	2e-04
pfam01212	288	pfam01212, Beta_elim_lyase, Beta-eliminating lyase	3e-04
PRK06425	332	PRK06425, PRK06425, histidinol-phosphate aminotran	0.001
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	0.003

>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme

 Score =  409 bits (1054), Expect = e-141
 Identities = 139/310 (44%), Positives = 204/310 (65%), Gaps = 8/310 (2%)

Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           +LA+HAG+R  R   T A+  P+  TS Y F                ++Y R GNPT   
Sbjct: 2   TLAVHAGQRPDRQ--TGAVVVPIYLTSTYVFDTVE---ALFAGEHGGYDYSRSGNPTRDA 56

Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +EE+++ALEG E+ +  +SGM+A    LLAL+ AG H+V T D Y  T    E VLP+ G
Sbjct: 57  LEERIAALEGGEAALAFSSGMAAIFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFG 116

Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
           I  T +DP+D++ LEAA+  N     F E+PTNP L+ VD++ ++ +  K GA+V +D T
Sbjct: 117 IEVTFVDPSDLDALEAAIKPN-TKAVFLETPTNPLLKVVDIEAIAKIAKKHGALVVVDNT 175

Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI--SGSGKLVTQIRNLHHVLGGALN 392
           FA+P  Q+ L LGAD+V+HSATK+IGGH+DV+ G +  +G  +L  ++R L +  G  L+
Sbjct: 176 FASPYLQRPLELGADIVVHSATKYIGGHSDVVGGVVVVNGREELAKRLRFLQNATGAVLS 235

Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 452
           P  A+L++RG+KTL LR+++    AL++A+ LE HPKV++V+YPGL SHP H +A +QM+
Sbjct: 236 PFDAWLLLRGLKTLGLRMERHQENALKLAEFLEEHPKVEKVYYPGLPSHPGHELAKKQMS 295

Query: 453 GFGGVVSFEV 462
           GFGG++SFE+
Sbjct: 296 GFGGMLSFEL 305

This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382

>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

 Score =  398 bits (1026), Expect = e-137
 Identities = 140/293 (47%), Positives = 203/293 (69%), Gaps = 2/293 (0%)

Query: 171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230
            A+  P+  TS + F   AE  D    R   + Y R GNPT   +E+K++ALEG E+ + 
Sbjct: 1   GAVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALA 60

Query: 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290
            +SGM+A + +LLAL+ AG H+V + D Y  T    E +LPK+GI  T +DP D E LEA
Sbjct: 61  FSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEA 120

Query: 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 350
           A+      L + ESPTNP L+ VD++ +++L H+ GA++ +D TFATP  Q+ L LGAD+
Sbjct: 121 AI-KPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPLELGADI 179

Query: 351 VLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 409
           V+HSATK+IGGH+DV+AG + GSG+ L+ ++R L   LG  L+P  A+L++RG+KTL LR
Sbjct: 180 VVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLR 239

Query: 410 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           +++ +  AL++A+ LE HPKV+RV+YPGL SHP+H +A +QM+G+GGV SFE+
Sbjct: 240 MERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFEL 292

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369

>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

 Score =  354 bits (911), Expect = e-119
 Identities = 129/308 (41%), Positives = 187/308 (60%), Gaps = 4/308 (1%)

Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
            +HAG R      T A+  P+  TS + F    E +D        ++Y R GNPT   +E
Sbjct: 12  LVHAGRRPDDL--TGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRTGNPTRDALE 69

Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
           E ++ LEG E     +SGM+A +  LLAL+ AG H++   D Y  T    E +L K G+ 
Sbjct: 70  EALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVE 129

Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
            T +DP D E LEAA+   N  L F E+P+NP L   D+  ++ L    GA+V +D TFA
Sbjct: 130 VTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFA 189

Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPN 394
           TP+ Q+ L LGAD+V+HSATK++GGH+DVL G +    + + ++         G  L+P 
Sbjct: 190 TPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPF 249

Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 454
            A+L++RG++TL LR+++ N  AL++A+ L  HPKVK+V+YPGL SHP H +A +QMTG+
Sbjct: 250 DAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGY 309

Query: 455 GGVVSFEV 462
           GG+ SFE+
Sbjct: 310 GGLFSFEL 317

Length = 396

>gnl|CDD|236202 PRK08249, PRK08249, cystathionine gamma-synthase; Provisional

 Score =  307 bits (788), Expect = e-101
 Identities = 133/311 (42%), Positives = 192/311 (61%), Gaps = 5/311 (1%)

Query: 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTT 212
            G+ A+ AGE+    +   A   PVV + AY +    E  D    ++    Y R  NPT 
Sbjct: 9   VGTKAVWAGEK--EYLPYGATQVPVVLSVAYGYDDIDEWYDVALGKKPGHIYSRNTNPTV 66

Query: 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKT-RIFIETVLP 271
              EEK+  LEGAE+    ++GM+A +  L   +  G  +V+  D Y  T +IF E  LP
Sbjct: 67  QAFEEKVRILEGAEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTE-FLP 125

Query: 272 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 331
           +MG+  T+ +  D E +EA +      L + E+PTNP L+ VD++ ++    K GA+V +
Sbjct: 126 RMGVDVTLCETGDHEQIEAEIAKG-CDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVV 184

Query: 332 DGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL 391
           D TFATP+NQ  L+LGADLV+HSATKF+ GH D L G + GS +L+ Q+ +   + G  +
Sbjct: 185 DNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATM 244

Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM 451
           +P +AYLI+RGMKTL LRV+QQ  +A+ +AK L+ HPKV+ V+YPGL++HP H IA  QM
Sbjct: 245 DPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQM 304

Query: 452 TGFGGVVSFEV 462
            GFGG++SF +
Sbjct: 305 RGFGGILSFVL 315

Length = 398

>gnl|CDD|235807 PRK06460, PRK06460, hypothetical protein; Provisional

 Score =  265 bits (680), Expect = 4e-85
 Identities = 123/294 (41%), Positives = 180/294 (61%), Gaps = 12/294 (4%)

Query: 169 VTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAEST 228
            T AITTP+  T+AY + +        EK    + Y R  NPT + + +K+  LE AE  
Sbjct: 15  ATGAITTPIYQTTAYHYPE-------GEK----YRYSREANPTVLELTKKIVELENAEMG 63

Query: 229 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288
           V  +SGM A +   LAL+  G  ++   D + ++  F    L   G+     +P     +
Sbjct: 64  VAFSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNII 123

Query: 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 348
           E A  +    + F E+ TNP LR VD+  +S +C + G+I+ +D TF+TP+NQK L LGA
Sbjct: 124 EKA-KSKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPLELGA 182

Query: 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL 408
           D+V+HSA+KF+ GHNDV+AG  +G GKL+  I  +   LG +L+P+AAYL +RG+KTL +
Sbjct: 183 DIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLKI 242

Query: 409 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           R+   N  A ++A+ LE HPKV +V+YPGLKSH ++ IA + + GFGGV+SFEV
Sbjct: 243 RMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEV 296

Length = 376

>gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated

 Score =  258 bits (662), Expect = 3e-82
 Identities = 117/309 (37%), Positives = 186/309 (60%), Gaps = 6/309 (1%)

Query: 155 SLAIHAG-ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
           +LA+ AG  R   G  ++A+      TS++ F+  AE             Y R+ NPT  
Sbjct: 9   TLAVRAGQLRSPFGEHSEALFL----TSSFVFESAAEAAARFAGEEPGNIYSRFTNPTVT 64

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
           + +E+++ALEGAE+ V  ASGM+A   +++AL+ AG H+V++   +  T    E +  + 
Sbjct: 65  MFQERLAALEGAEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARF 124

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
           GI  T +D  D++   AA+  N   LFF E+P+NP     D+  ++++ H  GA++ +D 
Sbjct: 125 GIETTFVDLTDLDAWRAAVRPNT-KLFFLETPSNPLTELADIAALAEIAHAAGALLVVDN 183

Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP 393
            F TP  Q+ L LGAD+V+HSATK++ G   VL G++ GS +L+ ++       G  L+P
Sbjct: 184 CFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSP 243

Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 453
             A++ ++G++TL LR++  ++ AL +A+ LEAHP V+RV YPGL SHP+H +A +Q  G
Sbjct: 244 FNAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKG 303

Query: 454 FGGVVSFEV 462
            G +VSFEV
Sbjct: 304 GGAIVSFEV 312

Length = 390

>gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional

 Score =  254 bits (650), Expect = 1e-80
 Identities = 111/294 (37%), Positives = 178/294 (60%), Gaps = 11/294 (3%)

Query: 170 TDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV 229
           T A++ P+   S Y  +   +           +EY R GNPT   +EE ++ LEG  +  
Sbjct: 18  TGAVSVPIYQVSTYKQEAVGK--------HQGYEYSRTGNPTRAALEELIAVLEGGHAGF 69

Query: 230 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE 289
              SGM+A T +++ L  +G H++ T D Y  T   +  VL + GI  T +D +++E +E
Sbjct: 70  AFGSGMAAITAVMM-LFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVE 128

Query: 290 AALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGAD 349
            A+  N  +++  E+PTNP L+  D+K +S +  +KG +  +D TF TP  Q  +SLGAD
Sbjct: 129 EAIRPNTKAIYV-ETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSPISLGAD 187

Query: 350 LVLHSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL 408
           +VLHSATK++GGH+DV+AG  +  S +L   +  + +  GG L P  ++L++RG+KTL +
Sbjct: 188 IVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKTLGI 247

Query: 409 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           R+++  + +  +A+ L  HP V +V+YPGL SHP H +A +Q  GFGG++SF+V
Sbjct: 248 RMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDV 301

Length = 377

>gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional

 Score =  252 bits (645), Expect = 1e-79
 Identities = 118/318 (37%), Positives = 190/318 (59%), Gaps = 17/318 (5%)

Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFE-----YGRYG 208
            + AIH G    +     ++ TP+  TS + F  +AE    +  RR + E     Y R G
Sbjct: 10  ATKAIHGGHIGDKQF--GSLATPIYQTSTFIFD-SAE----QGGRRFAGEESGYIYSRLG 62

Query: 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET 268
           NPT+  VE K++ LEG E+ V+ ASGM A +  L + + AG H+V +   Y  T   +  
Sbjct: 63  NPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNH 122

Query: 269 VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KG 326
            L + G+  T +D +++E +  AL  N   + + E+P NP L+  D+K +S++ H+  K 
Sbjct: 123 GLTRYGVEVTFVDTSNLEEVRNALKANT-KVVYLETPANPTLKVTDIKAISNIAHENNKE 181

Query: 327 AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLH 384
            +V +D TF TP  Q+ L LGAD+V+HSATK++ GH DV+AG + G  + + Q++   + 
Sbjct: 182 CLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIK 241

Query: 385 HVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEH 444
            + G  + P  A+LIIRGMKTL +R+++    A+++AK LE+HP V++V+YPGL+S   +
Sbjct: 242 DMTGSVIGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYY 301

Query: 445 HIATQQMTGFGGVVSFEV 462
            +A +QM+  G ++SFE+
Sbjct: 302 ELAKKQMSLPGAMISFEL 319

Length = 400

>gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase

 Score =  249 bits (637), Expect = 1e-78
 Identities = 124/310 (40%), Positives = 184/310 (59%), Gaps = 7/310 (2%)

Query: 155 SLAIHAG-ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
           +LA+  G  R G     +A+      TS Y +   A            F Y RYGNPT  
Sbjct: 2   TLAVRGGMLRSGFEETAEALYL----TSGYVYDSAAVAAKRFAGELPGFVYSRYGNPTVS 57

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
           V EE+++ LEGAE+ V  ASGM+A    L+AL+ AG H+V +   +    +    +LP+ 
Sbjct: 58  VFEERLALLEGAEAAVATASGMAAIFAALMALLGAGDHVVASRSLFGSCFVVCSEILPRF 117

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
           G+    +D  D+   EAAL  N     F E+P+NP    VD+  V++L H  GA V +D 
Sbjct: 118 GVQTVFVDGTDLSAWEAALKPNT-KAVFVETPSNPLQELVDIAAVAELAHAAGAKVVVDN 176

Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ-IRNLHHVLGGALN 392
            FATPL Q+ L LGAD+V++SATK I G   VL G+I GS + + + ++ L    G A++
Sbjct: 177 VFATPLLQQPLKLGADVVVYSATKHIDGQGRVLGGAILGSEEYMDEPVQKLLRHTGPAMS 236

Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 452
           P  A+++++G++TL +RVQ QN++AL +A+ L  HP V+ V+YPGL SHP+H +A +QM+
Sbjct: 237 PFNAWVLLKGLETLAIRVQHQNASALAIAEWLNGHPSVQWVYYPGLPSHPQHELAKRQMS 296

Query: 453 GFGGVVSFEV 462
           G G VV+F++
Sbjct: 297 GGGTVVTFDL 306

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis [Amino acid biosynthesis, Aspartate family]. Length = 381

>gnl|CDD|236104 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional

 Score =  248 bits (636), Expect = 2e-78
 Identities = 118/309 (38%), Positives = 176/309 (56%), Gaps = 11/309 (3%)

Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           + AIHAG        T A+  P+  +S +       L       R  +EY R GNPT   
Sbjct: 15  TRAIHAGYEPDP--ATGAVNPPIYASSTFAQDGVGGL-------RGGYEYARTGNPTRTA 65

Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +EE+++ALEG       +SGM+A+  +L A++  G HIV   D Y  T   I+ V  + G
Sbjct: 66  LEEQLAALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWG 125

Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
           +  T +D +D++ + AA+      L + E+PTNP L   D+  +++L H  GA V +D T
Sbjct: 126 VEYTPVDLSDLDAVRAAITPR-TKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNT 184

Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNP 393
           FA+P  Q+ L+LGAD+V+HS TK+IGGH+DV+ G+ ++   +L      L +  G    P
Sbjct: 185 FASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGP 244

Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 453
             AYL +RG+KTL +R+ + +  A  +A+ L  HP+V  V YPGL SHP H +A +QM G
Sbjct: 245 FDAYLTLRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRG 304

Query: 454 FGGVVSFEV 462
           FGG+VS  +
Sbjct: 305 FGGMVSVRL 313

Length = 388

>gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

 Score =  249 bits (637), Expect = 5e-78
 Identities = 116/341 (34%), Positives = 177/341 (51%), Gaps = 38/341 (11%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
           LA+HAG+       T A   P+  T++Y F  T         +     Y R  NPTT V+
Sbjct: 11  LAVHAGQE---DPTTGARAVPIYQTTSYVFDDTDHAAALFGLKEPGNIYTRIMNPTTDVL 67

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           EE+++ALEG  + + +ASG +A T  +L L  AG +IV+++  Y  T       L ++GI
Sbjct: 68  EERIAALEGGVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGI 127

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
               +DP D E  EAA++ N     F E+  NP L  +D++ ++++ H+ G  + +D TF
Sbjct: 128 EVRFVDPDDPENFEAAIDENT-KAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTF 186

Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL------------------- 376
           ATP   + +  GAD+V+HSATK+IGGH   + G I   GK                    
Sbjct: 187 ATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYH 246

Query: 377 --------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAK 422
                         +     L   LG  L+P  A+L+++G++TL LR+++    AL++A+
Sbjct: 247 GLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAE 306

Query: 423 ILEAHPKVKRVHYPGLKSHPEHHIATQQMT-GFGGVVSFEV 462
            LE HPKV  V+YPGL SHP H +A + +  G G V++F V
Sbjct: 307 FLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGV 347

Length = 426

>gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase

 Score =  238 bits (608), Expect = 3e-74
 Identities = 115/308 (37%), Positives = 187/308 (60%), Gaps = 5/308 (1%)

Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
           AIHAG          A+T P+  TS + F    +  +    + + + Y R GNPT   +E
Sbjct: 8   AIHAGYPPKDQF--GALTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGNPTVSNLE 65

Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
            +++ LEG E+ V  +SGM A    LL ++ AG H+++    Y  T   +E  L K GI 
Sbjct: 66  GRIAFLEGTEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQ 125

Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
              I+ A  E ++A + +N   ++F E+P NP ++ +D++ V    H +G  V +D TFA
Sbjct: 126 VDFINMAIPEEVKAHIKDNTKIVYF-ETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFA 184

Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPN 394
           TP+    ++LG D+V+HSATK+IGGH DV+AG I G  +L+ QIR   +  + G  ++P 
Sbjct: 185 TPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPF 244

Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 454
            A+LI+RG+KTL++R+++ +  A+++A+ L++HP V++V+YPG + HP H IA +QM   
Sbjct: 245 DAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMG 304

Query: 455 GGVVSFEV 462
           GG+++FE+
Sbjct: 305 GGMITFEL 312

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine [Energy metabolism, Amino acids and amines]. Length = 391

>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase

 Score =  237 bits (606), Expect = 1e-73
 Identities = 117/345 (33%), Positives = 184/345 (53%), Gaps = 44/345 (12%)

Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           +L +HAG+       T +   P+  T++Y F  T         + A   Y R  NPTT V
Sbjct: 4   TLQLHAGQEPDP--TTGSRAVPIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTTDV 61

Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +E++++ALEG  + + +ASG +A T  +L L  AG +IV+++  Y  T    +  L ++G
Sbjct: 62  LEQRIAALEGGVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLG 121

Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
           I    +DP D E  E A++ N  ++F  E+  NP +   D++ ++++ H  G  + +D T
Sbjct: 122 IEVRFVDPDDPEEFEKAIDENTKAVFA-ETIGNPAINVPDIEAIAEVAHAHGVPLIVDNT 180

Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL------------------ 376
           FATP   + +  GAD+V+HSATK+IGGH   + G I   GK                   
Sbjct: 181 FATPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYH 240

Query: 377 ------------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTAL 418
                             V  +R+    LG AL+P  A+L+++G++TL LR+++    AL
Sbjct: 241 GLVFTETFGNPAFIVKARVQLLRD----LGAALSPFNAFLLLQGLETLSLRMERHVENAL 296

Query: 419 RMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT-GFGGVVSFEV 462
           ++A+ LEAHPKV  V+YPGL SHP H +A + +  GFG V+SFE+
Sbjct: 297 KVAEFLEAHPKVAWVNYPGLASHPHHALAKKYLPKGFGAVLSFEI 341

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities [Amino acid biosynthesis, Aspartate family, Amino acid biosynthesis, Serine family]. Length = 418

>gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional

 Score =  234 bits (599), Expect = 8e-73
 Identities = 112/295 (37%), Positives = 166/295 (56%), Gaps = 13/295 (4%)

Query: 170 TDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV 229
           T A+  P+ + S      T    DF       ++Y R GNPT   +E+ ++ LEG     
Sbjct: 22  TGAVNVPIYHAS------TFHQFDFDT--FGKYDYSRSGNPTREALEDIIAELEGGTKGF 73

Query: 230 IMASGMSA-STVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288
             ASGM+A ST  LL  +  G H++ + D Y  T   I  VL + GI  T +D  ++E +
Sbjct: 74  AFASGMAAISTAFLL--LSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEV 131

Query: 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 348
              +  N   LF+ E+P+NP L+  D++ V  L    G +  +D TF TPL QK L LGA
Sbjct: 132 AQNIKPNT-KLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLGA 190

Query: 349 DLVLHSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH 407
           D+VLHSATKF+ GH+DVLAG ++    +L  ++  L +  G  L     +L++RG+KTLH
Sbjct: 191 DVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRGLKTLH 250

Query: 408 LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           +R++  + TA ++A  L+ HPKV+ V+YPGL++H    I   Q T  G V+SF +
Sbjct: 251 VRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTL 305

Length = 390

>gnl|CDD|180443 PRK06176, PRK06176, cystathionine gamma-synthase/cystathionine beta-lyase; Validated

 Score =  230 bits (588), Expect = 2e-71
 Identities = 114/306 (37%), Positives = 178/306 (58%), Gaps = 13/306 (4%)

Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           IH G  +     T A++ P+  TS Y  ++ A        R   +EY R GNPT   +EE
Sbjct: 8   IHGG--ISEDTTTGAVSVPIYQTSTY--RQDAI------GRPKGYEYSRSGNPTRFALEE 57

Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
            ++ LEG       ASG+ A    + +L  +G H++   D Y  T    + VL K G++ 
Sbjct: 58  LIADLEGGVKGFAFASGL-AGIHAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSC 116

Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
           T+ID +D+  ++ A+  N  +L+  E+P+NP L+  D+   + +    G +  +D TFAT
Sbjct: 117 TIIDTSDLSQIKKAIKPNTKALYL-ETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT 175

Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAA 396
           P  Q  L LGAD+V+HS TK++GGH+DV+AG + + +  L  +I    + +GG L P  +
Sbjct: 176 PYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDS 235

Query: 397 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 456
           +L+ RG+KTL LR++     AL +A+ LE HPKV++V+YPGL +HP H +A +QM GF G
Sbjct: 236 WLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSG 295

Query: 457 VVSFEV 462
           ++SF +
Sbjct: 296 MLSFTL 301

Length = 380

>gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional

 Score =  230 bits (588), Expect = 5e-71
 Identities = 110/293 (37%), Positives = 171/293 (58%), Gaps = 3/293 (1%)

Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
           A+  PV  T+ + F       +          Y R  NPT  ++E++M++LEG E+ V +
Sbjct: 27  ALVPPVYLTATFAFPTAEYGAECFAGEEEGHFYSRISNPTLALLEQRMASLEGGEAAVAL 86

Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
           ASGM A T  L  L+  G  ++     Y  T  F+   L + G+T   +D  D   L+AA
Sbjct: 87  ASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAA 146

Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
           +++    ++F E+P NP +R VD+  V+++ H  GA V +D T+ TP  Q+ L LGADLV
Sbjct: 147 ISDKTRMVYF-ETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLV 205

Query: 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 409
           +HSATK++GGH D+ AG + G   L  +IR   L  + G  ++P  A+L++RG+KTL LR
Sbjct: 206 VHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKTLALR 265

Query: 410 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           + +  ++A  +A+ L  HP V+ VHYPGL S  +H +A +QM   GG+++FE+
Sbjct: 266 MDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFEL 318

Length = 403

>gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional

 Score =  228 bits (584), Expect = 1e-70
 Identities = 104/293 (35%), Positives = 164/293 (55%), Gaps = 8/293 (2%)

Query: 171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230
           DA+  P+  TS + F    E+ D     +    Y R  NPT    EE ++ LEGAE    
Sbjct: 24  DAVVPPIFQTSLFTFDSYDEMEDVYAGEKVRPIYSRGDNPTVRAFEEMLAKLEGAEDARG 83

Query: 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290
            ASGM+A +  +L+ V  G  IV     Y       ET+L +MG+    +D  D E +  
Sbjct: 84  FASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAK 143

Query: 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 350
           AL      L + ESPT+      DV  ++ L  + G +  ID ++A+P+ Q+ ++LG DL
Sbjct: 144 AL--PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPITLGVDL 201

Query: 351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGGALNPNAAYLIIRGMKTLHLR 409
           V+HSA+K++GGH+D +AG ++GS + + +I    +  LG  L+P  A+L++RG++TL LR
Sbjct: 202 VIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTLPLR 261

Query: 410 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           ++   ++AL +A+ L+AHP V+RV +P L +HP    A   ++G  G+ SF  
Sbjct: 262 MKAHEASALEIARRLKAHPVVERVCHPALANHPP---AG--LSGTSGLFSFIF 309

Length = 389

>gnl|CDD|168979 PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed

 Score =  226 bits (577), Expect = 2e-69
 Identities = 108/264 (40%), Positives = 157/264 (59%), Gaps = 6/264 (2%)

Query: 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
           F Y RY NPT  + E++M ALEGAE     ASGM+A T  +L  V AG H+V     +  
Sbjct: 57  FIYSRYSNPTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQVKAGDHVVAARALFGS 116

Query: 262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
            R  +ET+LP+ GI +T++D  D++  E A+  N   +FF ESPTNP L  +D+  V+ +
Sbjct: 117 CRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNT-KVFFLESPTNPTLEVIDIAAVAKI 175

Query: 322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR 381
            ++ GA + +D  FATPL QK L LGA +V++SATK I G    L G +      + +  
Sbjct: 176 ANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEE-- 233

Query: 382 NLHHVL---GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 438
           +L       G +L+P  A+ +++G++TL +RV+QQ  +A  +A  L  HPKV RV YPG 
Sbjct: 234 HLQDYFRHTGPSLSPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGR 293

Query: 439 KSHPEHHIATQQMTGFGGVVSFEV 462
             HP+  I  +QMTG   +V+FE+
Sbjct: 294 ADHPQADIIAKQMTGGSTLVAFEL 317

Length = 398

>gnl|CDD|236298 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional

 Score =  225 bits (576), Expect = 2e-69
 Identities = 107/313 (34%), Positives = 164/313 (52%), Gaps = 12/313 (3%)

Query: 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTT 212
            G+ A+             ++  P+  T+ +  +  A   D    R    +Y R  NPT 
Sbjct: 3   RGTDAVRGYRGSDP---YGSLQPPIYLTALFRQEGEAYPSD----RGFDLKYSREENPTL 55

Query: 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 272
             +EE ++ LEG    +   SGM+A + +  +L+ AG  +V   + Y  T + +   L K
Sbjct: 56  RPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTT-LRLLKSLEK 114

Query: 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 332
            G+   +  P   E +  A+      L F E+ TNP L+ +DV  V+    + GAI+ +D
Sbjct: 115 FGVKVVLAYP-STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVD 173

Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGAL 391
            TFATPL  + L  GAD V+HS TK+I GHNDV+ G  ++ SG+ + ++      LG  +
Sbjct: 174 NTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIM 233

Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM 451
            P  AYL++RG+KTL +R ++Q   A+ +A+ L  HPKV  V+YPGL S P H +A +  
Sbjct: 234 QPFEAYLVLRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLF 293

Query: 452 TG--FGGVVSFEV 462
               +GGVVSF V
Sbjct: 294 GKDLYGGVVSFRV 306

Length = 385

>gnl|CDD|236061 PRK07582, PRK07582, cystathionine gamma-lyase; Validated

 Score =  222 bits (568), Expect = 2e-68
 Identities = 102/260 (39%), Positives = 144/260 (55%), Gaps = 6/260 (2%)

Query: 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTR 263
           YGR  NPT   +E  +  LEGAE  ++  SGM+A T +L AL+  G  +V   D Y + R
Sbjct: 45  YGRASNPTWRALEAALGELEGAE-ALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVR 103

Query: 264 IFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH 323
                 L  +G+T      A M   EAAL      L   E+P+NP L   D+  ++   H
Sbjct: 104 ALAREYLAPLGVTVREAPTAGM--AEAALAG--ADLVLAETPSNPGLDVCDLAALAAAAH 159

Query: 324 KKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRN 382
             GA++ +D T ATPL Q+ L LGADLV+ S TK + GH+D+L G ++G   +L+  +  
Sbjct: 160 AAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVER 219

Query: 383 LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHP 442
              + G    P  A+L  R + TL LR  +Q + AL +A++L  HP V+ V YPGL   P
Sbjct: 220 WRLLAGAIPGPFEAWLAHRSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDP 279

Query: 443 EHHIATQQMTGFGGVVSFEV 462
            H +A +QM  FGG+VSFE+
Sbjct: 280 AHEVAARQMRRFGGLVSFEL 299

Length = 366

>gnl|CDD|236103 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase; Provisional

 Score =  221 bits (565), Expect = 1e-67
 Identities = 110/265 (41%), Positives = 160/265 (60%), Gaps = 10/265 (3%)

Query: 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
           F Y RYGNPT  + EE++  +EGAE+    ASGMSA    L AL+ AG  +V     +  
Sbjct: 62  FVYSRYGNPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGS 121

Query: 262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
             +    +LP+ G+    +D  D+   E AL+    ++FF E+P+NP    VD+  VS+L
Sbjct: 122 CFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFF-ETPSNPMQSLVDIAAVSEL 180

Query: 322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-----GKL 376
            H  GA V +D  FATPL Q+ L LGAD+V++S TK I G   VL G+I G      G +
Sbjct: 181 AHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPV 240

Query: 377 VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYP 436
              +R+     G AL+   A+++++G++TL LRV+  N++ALR+A+ LE HP V+ V YP
Sbjct: 241 QKLMRHT----GPALSAFNAWVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYP 296

Query: 437 GLKSHPEHHIATQQMTGFGGVVSFE 461
            L SHP++ +A +QM+G G VV+FE
Sbjct: 297 FLPSHPQYDLAKRQMSGGGTVVTFE 321

Length = 403

>gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase

 Score =  220 bits (561), Expect = 2e-67
 Identities = 104/300 (34%), Positives = 163/300 (54%), Gaps = 14/300 (4%)

Query: 167 GIVTD----AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL 222
           G+ +D     +  P+  ++ Y F        F E R  +++Y R GNPT  ++++ ++ L
Sbjct: 12  GLNSDTQYGCVVPPIYLSTTYNFT------GFNEPR--AYDYSRSGNPTRDLLQQALAEL 63

Query: 223 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282
           EG    V+  +GMSA  ++  AL+     +V   DCY  T   +  +  K       +D 
Sbjct: 64  EGGAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ 123

Query: 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK 342
            D + L AAL      L   E+P+NP LR VD+  +  L    GA+V +D TF +P  Q 
Sbjct: 124 GDEQALRAALAQK-PKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQN 182

Query: 343 ALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR 401
            L+LGADLVLHS TK++ GH+DV+AG+ I+   ++  ++    + LG       +YL +R
Sbjct: 183 PLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLR 242

Query: 402 GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE 461
           G++TL  R++ Q   A  + + L+  P VK+++YPGL  HP H IA +Q  GFG ++SFE
Sbjct: 243 GLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFE 302

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine [Amino acid biosynthesis, Aspartate family]. Length = 382

>gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional

 Score =  218 bits (557), Expect = 9e-67
 Identities = 105/307 (34%), Positives = 162/307 (52%), Gaps = 10/307 (3%)

Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
            IH G          ++T P+  TS + F+   +          S+ Y R GNPT  + E
Sbjct: 10  LIHHGYT--SEEHKGSLTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFE 67

Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
           E+M+ LEG E  +   SGM+A +  L+  + AG HI+ +   Y  T  F+E +  K  IT
Sbjct: 68  ERMAVLEGGEEALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMIT 127

Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
            +  D      +E  +  N   L F E+P NP ++ +D+K V  +  + G +V +D TF 
Sbjct: 128 HSFCDMETEADIENKIRPNTK-LIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFC 186

Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNA 395
           +P  Q+ L LG D V+HSATK+IGGH DV+AG      + L  +IR +   +GG + P  
Sbjct: 187 SPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFD 246

Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 455
           A+L++RG+KTL +R+ +    A ++   L+ H  V+ V Y      PE  +A++QM   G
Sbjct: 247 AWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWY------PEGELASRQMKRGG 300

Query: 456 GVVSFEV 462
           GV+SF +
Sbjct: 301 GVISFSI 307

Length = 386

>gnl|CDD|235650 PRK05939, PRK05939, hypothetical protein; Provisional

 Score =  216 bits (552), Expect = 8e-66
 Identities = 106/315 (33%), Positives = 171/315 (54%), Gaps = 26/315 (8%)

Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
           A+  P+  +  Y ++   +LID  + ++  F Y R G PTT  +E K++ +EG   TV  
Sbjct: 9   AVHKPIHTSVTYGYEDARDLIDVFQGKKPGFTYARQGTPTTAALEAKITKMEGGVGTVCF 68

Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
           A+GM+A   + L L+ AG H+V++   +  T     T L  +G+  T++D  D++ + AA
Sbjct: 69  ATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGT-LRGLGVEVTMVDATDVQNVAAA 127

Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
           +  N   + F E+  NP  +  D+  +  LC ++G +  +D T  +P   +   +GA LV
Sbjct: 128 IRPNT-RMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWLFRPKDVGASLV 186

Query: 352 LHSATKFIGGHNDVLAGSISGSGKL---------------------VTQIRN--LHHVLG 388
           ++S +K+I GH + L G+++ +G                       +TQIR   L   +G
Sbjct: 187 INSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRD-MG 245

Query: 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIAT 448
             L+  AA+ I  G +TL LRV +  S AL +A+ LEAHPKV RV+YPGL SHP+H  AT
Sbjct: 246 ATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARAT 305

Query: 449 QQMTGFGGVVSFEVL 463
           +    +GG++SFE+ 
Sbjct: 306 ELFRHYGGLLSFELA 320

Length = 397

>gnl|CDD|102374 PRK06434, PRK06434, cystathionine gamma-lyase; Validated

 Score =  211 bits (539), Expect = 4e-64
 Identities = 113/311 (36%), Positives = 168/311 (54%), Gaps = 21/311 (6%)

Query: 157 AIHAGE----RLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTT 212
           A+ +GE    R G       +TTP+  TS + +  + +       R   + Y R+GNPT 
Sbjct: 13  AVQSGELRDPRFGN------VTTPIFETSTFVYPNSEKEAYMDSTRGMPYIYTRWGNPTV 66

Query: 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 272
              EEK + LE AE  +  +SGM A T  +L+L+  G  I++ +D Y +T  F   VL  
Sbjct: 67  QAFEEKYAVLENAEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKT 126

Query: 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 332
           +GI    ID   +  L+   + +N  L + ES TNP L+  D+K VS  CH+   IV  D
Sbjct: 127 LGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHENDVIV--D 182

Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV-TQIRNLHHVLGGAL 391
            TFA+P NQ  L LGAD+V+HSATK+I GH+DV+ G    + K +   +      LG   
Sbjct: 183 ATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNP 242

Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM 451
           +P  AYL +RG+KTL LR+++ N   + +A+ L    K+  V+YP  +      I  + +
Sbjct: 243 DPIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTE------IGKKVL 296

Query: 452 TGFGGVVSFEV 462
            GFGG++SFE+
Sbjct: 297 RGFGGMLSFEL 307

Length = 384

>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed

 Score =  203 bits (517), Expect = 5e-61
 Identities = 92/270 (34%), Positives = 150/270 (55%), Gaps = 11/270 (4%)

Query: 169 VTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAEST 228
            T  +  PV  ++AY  +   E           F+Y R GNPT  V+E+ ++ LEG +  
Sbjct: 19  RTGTVNPPVYFSTAYRHEGIGE--------STGFDYSRTGNPTRGVLEQAIADLEGGDQG 70

Query: 229 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288
              +SGM+A  + +++L  +G  ++ ++D Y  T    E    K  +    ++ A ++ +
Sbjct: 71  FACSSGMAAIQL-VMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAI 129

Query: 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 348
           E A+  N  ++F  E+PTNP ++  D+  ++ +  K G ++ +D TF TP+ Q+ L  GA
Sbjct: 130 EQAITPNTKAIFI-ETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPLEEGA 188

Query: 349 DLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH 407
           D+V+HSATK++GGHNDVLAG +   G+ L  ++    +  G  L+P  ++L+IRGMKTL 
Sbjct: 189 DIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTLA 248

Query: 408 LRVQQQNSTALRMAKILEAHPKVKRVHYPG 437
           LR++Q    A  +A  L   P V  V YPG
Sbjct: 249 LRMRQHEENAKAIAAFLNEQPGVTDVLYPG 278

Length = 366

>gnl|CDD|235657 PRK05967, PRK05967, cystathionine beta-lyase; Provisional

 Score =  203 bits (517), Expect = 9e-61
 Identities = 96/288 (33%), Positives = 153/288 (53%), Gaps = 5/288 (1%)

Query: 173 ITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232
           +  PVV+ S   F     +      R   + YG  G PTT  + + + ALEG+  T+++ 
Sbjct: 31  VNPPVVHASTVLFPDAETM----ATRGQKYTYGTRGTPTTDALCKAIDALEGSAGTILVP 86

Query: 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAAL 292
           SG++A TV  L  +  G H +     Y  TR F +T+L ++G+     DP    G+   L
Sbjct: 87  SGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAK-L 145

Query: 293 NNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVL 352
              N  +  TE+P +      D+  +++  H+ GAIV +D T+ATPL  + L  G D+ +
Sbjct: 146 MRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRPLDFGVDISI 205

Query: 353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQ 412
           H+ATK+  GH+D+L G++S + K   Q+   H  LG    P+  Y I+RG++T+ +R++ 
Sbjct: 206 HAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRTMGIRLEH 265

Query: 413 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF 460
              +AL +A+ LE  P V RV +P L S P H I  +  +G  G+ SF
Sbjct: 266 HRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSF 313

Length = 395

>gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  201 bits (513), Expect = 8e-60
 Identities = 115/342 (33%), Positives = 185/342 (54%), Gaps = 37/342 (10%)

Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           +LAIHAG+ +     + A+  P+  T++Y F+ +    +    +     Y R  NPTT V
Sbjct: 11  TLAIHAGQEIDPTTGSRAV--PIYQTTSYGFRDSEHAANLFSLKEFGNIYTRIMNPTTDV 68

Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
            E++++ALEG    + ++SG +A T  +L +  AG  IV+++  Y  T       LPK+G
Sbjct: 69  FEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLG 128

Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
           IT   +DP+D E  EAA+ +   +L F E+  NP    +D++ V+ + H+ G  + +D T
Sbjct: 129 ITVKFVDPSDPENFEAAITDKTKAL-FAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNT 187

Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL------------------ 376
           FA+P   + +  GAD+V+HSATKFIGGH   + G I  SGK                   
Sbjct: 188 FASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSY 247

Query: 377 --------------VTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 421
                         +T+ R  L   LG AL+P  ++L+++G++TLHLR+++ +  AL +A
Sbjct: 248 HGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVA 307

Query: 422 KILEAHPKVKRVHYPGLKSHPEHHIATQQM-TGFGGVVSFEV 462
           K LE H  V+ V YPGL SHP + +A + +  G G +++F +
Sbjct: 308 KFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGI 349

Length = 431

>gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic

 Score =  198 bits (504), Expect = 5e-59
 Identities = 97/263 (36%), Positives = 151/263 (57%), Gaps = 3/263 (1%)

Query: 200 ASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCY 259
             ++Y R GNPT   +E  ++ L+ A+     +SGM+A  V +  L+  G  I+   D Y
Sbjct: 37  GPYDYTRSGNPTRTALESLLAKLDKADRAFAFSSGMAALDV-ITRLLNNGDEIIAGDDLY 95

Query: 260 RKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVS 319
             T   +  V+P+ G+    +D  D++ ++AAL      L   ESPTNP  + VD++ +S
Sbjct: 96  GGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPK-TKLVLLESPTNPLQKIVDIRKIS 154

Query: 320 DLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVT 378
           ++ H + A+V +D T  +PL    L LGAD+V HSATKF+ GH+DV+AG +     ++  
Sbjct: 155 EMAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAK 214

Query: 379 QIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 438
           ++  L +  G  L P   +L++RG+KTL +R+++Q   A  +A  L  HP+VK+V Y GL
Sbjct: 215 KVYFLQNSTGSGLAPFDCWLLLRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGL 274

Query: 439 KSHPEHHIATQQMTGFGGVVSFE 461
            SHP  H+   Q  G G V+SFE
Sbjct: 275 PSHPGFHLHFSQAKGAGSVLSFE 297

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 378

>gnl|CDD|236159 PRK08134, PRK08134, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  197 bits (503), Expect = 3e-58
 Identities = 107/342 (31%), Positives = 168/342 (49%), Gaps = 37/342 (10%)

Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           +LA+HAG        T A   P+  T+++ F+ +          RA   Y R  NPT  V
Sbjct: 11  TLALHAGAA--PDPATGARAVPIHLTTSFVFRDSDHAAALFNLERAGHVYSRISNPTVAV 68

Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +EE+++ALEG    +  ASG +A  + +  L+ AG HIV ++  Y  +   +   L + G
Sbjct: 69  LEERVAALEGGVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFG 128

Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
           I  T + P D++G  AA+  N   L F E+  NP L  +D+  V+ + H+ G  + +D T
Sbjct: 129 IETTFVKPGDIDGWRAAIRPNT-RLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDST 187

Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI--------SGSGK---LVTQIRNL 383
           F TP   +    GADLV HSATKF+GGH   + G +          SGK   L       
Sbjct: 188 FTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGF 247

Query: 384 HHV----------------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 421
           H +                       G  L+P  A+ +++G++TL LR+++  +   ++ 
Sbjct: 248 HGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVV 307

Query: 422 KILEAHPKVKRVHYPGLKSHPEHHIATQQM-TGFGGVVSFEV 462
             L +HP V RV +P L+SHP+H +A + +  G G V SF++
Sbjct: 308 AFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDL 349

Length = 433

>gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional

 Score =  193 bits (492), Expect = 3e-57
 Identities = 103/294 (35%), Positives = 159/294 (54%), Gaps = 16/294 (5%)

Query: 173 ITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232
           +  P+  +S Y F        F E R  + +Y R GNPT  VV+  ++ LEG    V+  
Sbjct: 23  VVPPIHLSSTYNF------TGFNEPR--AHDYSRRGNPTRDVVQRALAELEGGAGAVLTN 74

Query: 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAAL 292
           +GMSA  ++    +  G  +V   DCY  +    +++  +       +D  D + L AAL
Sbjct: 75  TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAAL 134

Query: 293 NNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVL 352
                 L   ESP+NP LR VD+  +  L  + GA+  +D TF +P  Q  L+LGADLVL
Sbjct: 135 AEKP-KLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGADLVL 193

Query: 353 HSATKFIGGHNDVLAGS-ISGSGKLVTQIR---NLHHVLGGALNPNAAYLIIRGMKTLHL 408
           HS TK++ GH+DV+AG  I+    +VT++    N   V GGA +   +YL++RG++TL  
Sbjct: 194 HSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFD---SYLLLRGLRTLVP 250

Query: 409 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           R++     A  + K L+  P VK++++P L  +  H IA +Q  GFG ++SFE+
Sbjct: 251 RMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFEL 304

Length = 386

>gnl|CDD|236105 PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  194 bits (496), Expect = 4e-57
 Identities = 117/338 (34%), Positives = 175/338 (51%), Gaps = 36/338 (10%)

Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           IHAG+       T+A   P+  T++Y F  T               Y R  NPT  VVE+
Sbjct: 19  IHAGQ--TPDPATNARALPIYQTTSYTFDDTDHAAALFGLAEPGNIYTRIMNPTQDVVEQ 76

Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
           +++ALEG  + +++ASG +A T  +L L  AG HIV++   Y  T       LPK+GI  
Sbjct: 77  RIAALEGGVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEV 136

Query: 278 T-VIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
           + V DP D++   AA+  N    FF E+ +NP +  +D+  V+++ H+ G  + +D T A
Sbjct: 137 SFVEDPDDLDAWRAAVRPNT-KAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIA 195

Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIR---------NLHHV 386
           TP   + L  GAD+V+HSATK++GGH   +AG I   G    TQ R         + H V
Sbjct: 196 TPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGV 255

Query: 387 ---------------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILE 425
                                LG A++P  A+LI +G++TL LR+++  + A R+A+ LE
Sbjct: 256 VFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLE 315

Query: 426 AHPKVKRVHYPGLKSHPEHHIATQQM-TGFGGVVSFEV 462
           A  +V  V+Y GL S P +  A +    G G V+SFE+
Sbjct: 316 ARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFEL 353

Length = 436

>gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial

 Score =  190 bits (483), Expect = 6e-56
 Identities = 89/308 (28%), Positives = 152/308 (49%), Gaps = 13/308 (4%)

Query: 158 IHAGE---RLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           IH+G             ++  P+   S   F   A       + +    YGR G  T   
Sbjct: 4   IHSGRQPRFSQG-----SVNPPLQRASTVLFDSHAAQR----RAKGELTYGRRGTLTHFA 54

Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +++ M  LEG     +  SG++A T  +LA V AG H++     Y  TR F + VL +MG
Sbjct: 55  LQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMG 114

Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
           +  T  DP   E + A L   N  + F E+P++      D+  ++      G ++ ID T
Sbjct: 115 VDITYYDPLIGEDI-ATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNT 173

Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN 394
           +A  L  K L  G D+ + + TK++ GH+D++ G++  + +   Q+R   +++G  ++ +
Sbjct: 174 WAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDAD 233

Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 454
            AY  +RG++TL +R++Q   ++L +AK L   P+V RV +P L S P H    +  +G 
Sbjct: 234 DAYTTLRGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGS 293

Query: 455 GGVVSFEV 462
            G+ SF +
Sbjct: 294 SGLFSFVL 301

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys [Amino acid biosynthesis, Aspartate family]. Length = 377

>gnl|CDD|181554 PRK08776, PRK08776, cystathionine gamma-synthase; Provisional

 Score =  190 bits (483), Expect = 1e-55
 Identities = 123/314 (39%), Positives = 179/314 (57%), Gaps = 26/314 (8%)

Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
           A+ AG  + R     A+T P+V +S + F        F  KR+  ++Y R GNPT  ++ 
Sbjct: 17  AVRAG--IDRDTAYGAVTPPIVLSSNFSFDG------FGNKRQ--YDYTRSGNPTRDLLG 66

Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKT-RIFIETVLPKMG- 274
           E ++ LEG    VI A+GM A  ++L AL+  G  +V   D Y  + R+F    L K G 
Sbjct: 67  EALAELEGGAGGVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLF--NALAKKGH 124

Query: 275 ---ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 331
              ITA + DP     L  AL  +   L   E+P+NP LR  D++ V +  HK GA+  +
Sbjct: 125 FALITADLTDP---RSLADALAQSP-KLVLIETPSNPLLRITDLRFVIEAAHKVGALTVV 180

Query: 332 DGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGA 390
           D TF +P  QK L  GADLVLHS TK+I GH+DV+ G+ ++   +L  Q+    + LG  
Sbjct: 181 DNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLT 240

Query: 391 LNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIAT 448
            +P  A+L +RG++TL   LRV Q+N+ A+  A +L+ H  V +V+YPGL SHP H +A 
Sbjct: 241 GSPFDAFLTLRGLRTLDARLRVHQENADAI--AALLDGHAAVNQVYYPGLASHPGHALAA 298

Query: 449 QQMTGFGGVVSFEV 462
           +Q  GFG ++SFE+
Sbjct: 299 RQQKGFGAMLSFEL 312

Length = 405

>gnl|CDD|180809 PRK07049, PRK07049, methionine gamma-lyase; Validated

 Score =  189 bits (482), Expect = 3e-55
 Identities = 100/314 (31%), Positives = 158/314 (50%), Gaps = 23/314 (7%)

Query: 172 AITTPVVNTSAYFFKKTAELIDFKEK---RR-------ASFEYGRYGNPTTVVVEEKMSA 221
           A+  PV  TS + F+   +  DF +    R+       A   Y R+ +P + +VE++++ 
Sbjct: 35  AVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLVYSRFNHPNSEIVEDRLAV 94

Query: 222 LEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV-- 279
            EGAES  + +SGMSA    LLA V  G  I+ +   Y  T   +       G+ A    
Sbjct: 95  YEGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFA 154

Query: 280 --IDPADME-GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA------IVC 330
             +  A +    EAA     VSL   E+P NP    VDV  V  +     A      I+ 
Sbjct: 155 DGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIA 214

Query: 331 IDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA 390
            D T   P+ QK L  GADL ++S TK++GGH+D++AG++ G   L+ Q+R L   +G  
Sbjct: 215 CDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQ 274

Query: 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL--KSHPEHHIAT 448
           L+P++ +++ R ++TL LR+++ N  A  +A+ L  HPKV+++HY            +  
Sbjct: 275 LDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYK 334

Query: 449 QQMTGFGGVVSFEV 462
           +Q TG G   SF++
Sbjct: 335 RQCTGAGSTFSFDI 348

Length = 427

>gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional

 Score =  184 bits (468), Expect = 1e-53
 Identities = 95/290 (32%), Positives = 151/290 (52%), Gaps = 4/290 (1%)

Query: 173 ITTPVVNTSAYFFKKTAELIDFKEKRRASFE--YGRYGNPTTVVVEEKMSALEGAESTVI 230
           I  PV   S   F   AE+     K RA+ E  YGR G PT    +  +  LEG   T +
Sbjct: 23  INPPVFRASTVVFDTVAEM-RHAAKNRANGEMFYGRRGTPTHFAFQAAIVELEGGAGTAL 81

Query: 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290
             SG +A +  LL+ + AG H++    CY  TR   + +L   GI  T  DP   EG+  
Sbjct: 82  YPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRE 141

Query: 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 350
            L   N  + F ESP +  +   DV  +S + H+   +V +D T+A+P+N +   +G D+
Sbjct: 142 -LIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDI 200

Query: 351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRV 410
            + +ATK+I GH+DV+ G+ + + K   Q+R   +++G   +P+  YL +RG++TL +R+
Sbjct: 201 SIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLGVRL 260

Query: 411 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF 460
            Q    AL++A  L   P+V  V +P  ++ P H    +  +G  G+ SF
Sbjct: 261 AQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSF 310

Length = 394

>gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  182 bits (462), Expect = 2e-52
 Identities = 111/341 (32%), Positives = 173/341 (50%), Gaps = 38/341 (11%)

Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           +LAIHAG        T A+  P+  T++Y F  T    D  + +     Y R  NPT  V
Sbjct: 5   TLAIHAG--YSPDPTTKAVAVPIYQTTSYAFDDTQHGADLFDLKVPGNIYTRIMNPTNDV 62

Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +E++++ALEG    + +ASGM+A T  +  +  AG +IV+    Y  T   +   LP++G
Sbjct: 63  LEQRVAALEGGVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIG 122

Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
           I        D+  LEA ++    ++ F ES  NP    +D++ ++D  H+ G  + +D T
Sbjct: 123 IETRFAAHDDIAALEALIDERTKAV-FCESIGNPAGNIIDIQALADAAHRHGVPLIVDNT 181

Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK------------LVTQIRN 382
            ATP+  +    GAD+V+HS TK+IGGH   + G +  SGK            L T   +
Sbjct: 182 VATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPS 241

Query: 383 LHHV----------------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRM 420
            H V                      +G AL+P  A+LI++G++TL LR+++    AL++
Sbjct: 242 YHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKV 301

Query: 421 AKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF-GGVVSF 460
           A+ L+ HP+V  V Y GL  HPEH +A + M G    ++SF
Sbjct: 302 ARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSF 342

Length = 425

>gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase

 Score =  180 bits (459), Expect = 1e-51
 Identities = 100/291 (34%), Positives = 168/291 (57%), Gaps = 11/291 (3%)

Query: 171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230
           DA++TP+  T+   FK+ + +          ++Y R GNPT   +E  ++ L+ A+    
Sbjct: 102 DAMSTPLYQTAT--FKQPSAI------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFC 153

Query: 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290
             SGM+A +  +  L+  G  IV   D Y  +   +  V+P+ G+    ++  +++ + A
Sbjct: 154 FTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAA 212

Query: 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 350
           A+      L + ESPTNP  +  D++ ++++ H +GA+V +D +  +P+  + L LGAD+
Sbjct: 213 AIGPQT-KLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPLELGADI 271

Query: 351 VLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 409
           V+HSATKFI GH+DV+AG ++  G KL  ++  L +  G  L P   +L +RG+KT+ LR
Sbjct: 272 VMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALR 331

Query: 410 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF 460
           +++Q   A ++A  L +HP+VK+V+Y GL  HP HH+   Q  G G V SF
Sbjct: 332 IEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSF 382

Length = 464

>gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional

 Score =  178 bits (453), Expect = 2e-51
 Identities = 97/300 (32%), Positives = 154/300 (51%), Gaps = 14/300 (4%)

Query: 167 GIVTD----AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL 222
           GI +D    A+  P+  ++ Y F    E+          ++Y R GNP   ++E+ +S L
Sbjct: 14  GIESDSQYHAVVPPIYLSTNYGFPAFGEV--------PKYDYTRSGNPNRGLLEQTLSEL 65

Query: 223 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282
           E  +  V+   G SA  + + AL+     IV   DCY  T     T   K       +D 
Sbjct: 66  ESGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ 125

Query: 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK 342
           +D   L+AAL      L   E+P+NP +R VD+  +       GA+V +D TF TP+ QK
Sbjct: 126 SDAAALDAALAKKP-KLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQK 184

Query: 343 ALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR 401
            L LGAD V+HS TK+I GH+DV+ G  I+ + +   ++    + +G    P  +Y+ +R
Sbjct: 185 PLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLR 244

Query: 402 GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE 461
           G++TL  R++    +A ++   L+    V  +++P L  HP H IA +Q +GFG ++SFE
Sbjct: 245 GIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFE 304

Length = 388

>gnl|CDD|215134 PLN02242, PLN02242, methionine gamma-lyase

 Score =  177 bits (451), Expect = 8e-51
 Identities = 97/276 (35%), Positives = 154/276 (55%), Gaps = 13/276 (4%)

Query: 199 RASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDC 258
           R  + Y R+ NPT + +  +M+ALEG E+    ASGMSA + +LL L  +GGH+V +   
Sbjct: 65  RDFYIYSRHFNPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQLCSSGGHVVASNTL 124

Query: 259 YRKTRIFIETVLP-KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKL 317
           Y  T   +   LP K  IT T +D  D+E ++ A+      + + ES +NP L   D+  
Sbjct: 125 YGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPE 184

Query: 318 VSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV 377
           ++ + H+KG  V +D TFA P+      LGAD+V+HS +KFI G  D++AG++ G  +LV
Sbjct: 185 LARIAHEKGVTVVVDNTFA-PMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAELV 243

Query: 378 TQIRNLHH----VLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRV 433
             + +LHH    +LG  +NP  A+ +   +  L LR+++    A+  AK ++      +V
Sbjct: 244 NSMMDLHHGALMLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELG--LKV 301

Query: 434 HYPGLKSHPEHHIATQQMT---GFGGVVSFEVLMET 466
            YPGL+ HP+H +         GFGG++  +  M+T
Sbjct: 302 IYPGLEDHPQHALLKSMANKGYGFGGLLCLD--MDT 335

Length = 418

>gnl|CDD|168128 PRK05613, PRK05613, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  166 bits (421), Expect = 2e-46
 Identities = 108/351 (30%), Positives = 167/351 (47%), Gaps = 55/351 (15%)

Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFE-----YGRYGNPT 211
           +IHAG+ +     T A   P+  T++Y F  +AE      K+R + E     Y R  NPT
Sbjct: 18  SIHAGQSVDSD--TSARNLPIYQTTSYVFD-SAE----HAKQRFALEDLGPIYSRLTNPT 70

Query: 212 TVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP 271
              +E ++++LEG    V  ASG +A T  +L L  AG HIVT+   Y  T       L 
Sbjct: 71  VEALENRIASLEGGVHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLN 130

Query: 272 KMGITAT-VIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC 330
           ++GI  T V +P D E  +AA+  N  + FF E+  NP    +D+  V+++ H+    + 
Sbjct: 131 RLGIEVTFVENPDDPESWQAAVQPNTKA-FFGETFANPQADVLDIPAVAEVAHRNQVPLI 189

Query: 331 IDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLGG 389
           +D T AT    + L LGAD+V+ S TKF  G+   L G +   GK   T  R+   V   
Sbjct: 190 VDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPY 249

Query: 390 ALNPNAAY-----------------------------------LIIRGMKTLHLRVQQQN 414
            + P+ AY                                   +  +G+ TL LR+++ N
Sbjct: 250 FVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHN 309

Query: 415 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF---GGVVSFEV 462
             A+++A+ L  H KV +V++ GLK  P +  AT++  G    G V+SF++
Sbjct: 310 ENAIKVAEFLNNHEKVAKVNFAGLKDSPWY--ATKEKLGLKYTGSVLSFDI 358

Length = 437

>gnl|CDD|235983 PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed

 Score =  162 bits (412), Expect = 9e-46
 Identities = 100/299 (33%), Positives = 157/299 (52%), Gaps = 31/299 (10%)

Query: 170 TDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV 229
           T A+ TP+       F  T +  +F   +   F+Y R  NPT   +EE ++A+E A+  +
Sbjct: 22  TGALVTPL------HFSTTYQHPEFG--QSTGFDYTRTKNPTRAKLEETLAAIESADYAL 73

Query: 230 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKT-RIFIETVLPKMGITATVIDPADMEGL 288
             +SGMSA  V+  ++ P G  +V   D Y  + R F +    K G         + E +
Sbjct: 74  ATSSGMSA-IVLAFSVFPVGSKVVAVRDLYGGSFRWFNQQ--EKEGRFHFTYANTEEELI 130

Query: 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 348
            A     +  + + E+PTNP +   D++ V+ L H KGA V +D TF +P+ Q+ + LGA
Sbjct: 131 AAI--EEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGA 188

Query: 349 DLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH 407
           D+VLHSATK++ GHNDVLAG  ++   +L  ++    +  G  L+P  +YL++RG+KTL 
Sbjct: 189 DIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTLS 248

Query: 408 LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLMET 466
           LR+++  + A  +   L+  P VK V Y G                 GG++SF+V  ET
Sbjct: 249 LRMERSTANAQEVVAFLKKSPAVKEVLYTGK----------------GGMISFKVADET 291

Length = 364

>gnl|CDD|180810 PRK07050, PRK07050, cystathionine beta-lyase; Provisional

 Score =  158 bits (402), Expect = 5e-44
 Identities = 76/291 (26%), Positives = 142/291 (48%), Gaps = 2/291 (0%)

Query: 171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230
            +  TPV   S   F   A +     ++   + YG +  PT++ + ++++ +EG    ++
Sbjct: 26  RSFVTPVARASTVVFPDLATMRALDWRQDVQWRYGLHATPTSLALAQRLAEIEGGRHALL 85

Query: 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290
             SG++A +++   LV AG  ++   + Y   R   E +    GIT    DP    G+ A
Sbjct: 86  QPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGI-A 144

Query: 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 350
            L   N  L + E+P +  +   DV  ++     +G +  ID T++  L  K    G D+
Sbjct: 145 DLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDI 204

Query: 351 VLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 409
            + + TK+  G +DVL G+ I+   +L  +++     LG  ++ +   L++RG+ +L +R
Sbjct: 205 SVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSLQVR 264

Query: 410 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF 460
           +   + +AL +A+ L+A P++  V +P L   P H    +  TG GG+ S 
Sbjct: 265 LAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSV 315

Length = 394

>gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  152 bits (387), Expect = 1e-41
 Identities = 102/345 (29%), Positives = 163/345 (47%), Gaps = 47/345 (13%)

Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT---AELIDFKEKRRASFE--YGRYGN 209
           +LA+HAG +      T A  TP+  T+++ F      A L   +      F   Y R  N
Sbjct: 10  TLAVHAGAQ--PDPTTGARATPIYQTTSFVFNDADHAASLFGLQA-----FGNIYTRITN 62

Query: 210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV 269
           PT  V+EE+++ALEG  + + +ASG +A  ++   L+  G   +     Y  +       
Sbjct: 63  PTNAVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHA 122

Query: 270 LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV 329
               G      D  D    E A+     ++F  ES  NP     D+  ++++ H+ G  +
Sbjct: 123 FKSFGWQVRWADADDPASFERAITPRTKAIFI-ESIANPGGTVTDIAAIAEVAHRAGLPL 181

Query: 330 CIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI--------SGSGK--LVTQ 379
            +D T A+P   + +  GAD+V+HS TKF+GGH + + G I        S SGK  ++++
Sbjct: 182 IVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSE 241

Query: 380 IRNLHHV-----------------------LGGALNPNAAYLIIRGMKTLHLRVQQQNST 416
            R  +H                        LG A++P  A+LI+ G++TL LR+Q+ +  
Sbjct: 242 PRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDN 301

Query: 417 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM-TGFGGVVSF 460
           AL +A+ L+ HPKV  V+Y GL   P H +A +    G G V +F
Sbjct: 302 ALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTF 346

Length = 427

>gnl|CDD|181231 PRK08114, PRK08114, cystathionine beta-lyase; Provisional

 Score =  145 bits (368), Expect = 4e-39
 Identities = 83/269 (30%), Positives = 138/269 (51%), Gaps = 5/269 (1%)

Query: 197 KRRASFE--YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVT 254
           + RA+ E  YGR G  T   ++E M  LEG     +   G +A    +LA V  G H++ 
Sbjct: 47  RNRANGELFYGRRGTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLM 106

Query: 255 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD 314
           T   Y  T+ F   +L K+G+T T  DP     + A L   N  + F ESP +  +   D
Sbjct: 107 TGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADI-AKLIQPNTKVVFLESPGSITMEVHD 165

Query: 315 VKLVSDLCHKKG--AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 372
           V  +          A++ ID T+A  +  KAL  G D+ + + TK++ GH+D + G+   
Sbjct: 166 VPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVA 225

Query: 373 SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKR 432
           + +   Q+R   +++G  ++ + AY+  RG++TL +R++Q   ++L++A+ L  HP+V R
Sbjct: 226 NARCWEQLRENSYLMGQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVAR 285

Query: 433 VHYPGLKSHPEHHIATQQMTGFGGVVSFE 461
           V++P L     H    +  TG  G+ SF 
Sbjct: 286 VNHPALPGCKGHEFWKRDFTGSSGLFSFV 314

Length = 395

>gnl|CDD|102505 PRK06702, PRK06702, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  131 bits (331), Expect = 7e-34
 Identities = 90/320 (28%), Positives = 149/320 (46%), Gaps = 33/320 (10%)

Query: 176 PVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM 235
           P+  ++ Y +  + +L          + Y R GNPT    E+K++ LEG    V  ASG 
Sbjct: 27  PLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVATASGQ 86

Query: 236 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 295
           +A  + +L +  +G H++ ++  Y  T       L K+GI  T  +P        AL N+
Sbjct: 87  AAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALAND 146

Query: 296 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSA 355
              L + ES  NP +  ++ K  SD   +      +D T ATP   +A   GA++++HS 
Sbjct: 147 KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHST 206

Query: 356 TKFIGGHNDVLAGSISGSG----------KLVTQIRNLHHV------------------- 386
           TK+I GH   L G +   G          +LV    + H V                   
Sbjct: 207 TKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQL 266

Query: 387 ---LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPE 443
               G  ++P  AY+   G++TLHLR+++ +  AL +AK L  H +++ V+YPGL S+  
Sbjct: 267 LRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNEN 326

Query: 444 HHIATQQMT-GFGGVVSFEV 462
           + +A + +  G  GV++F +
Sbjct: 327 YSLAQKYLKKGASGVLTFGI 346

Length = 432

>gnl|CDD|224832 COG1921, SelA, Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 24/162 (14%)

Query: 287 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----Q 341
             E A+N N   L    S    F   +  + + ++ H+KG  V +D      ++     +
Sbjct: 148 DYELAINENTALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLR 207

Query: 342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN----------------LHH 385
           +AL+LGADLV  S  K +GG     AG I G  +L+ ++++                L  
Sbjct: 208 EALALGADLVSFSGDKLLGG---PQAGIIVGKKELIEKLQSHPLKRALRVDKETLAALEA 264

Query: 386 VLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAH 427
            L   L P      +R ++ L    +   + A R+A +    
Sbjct: 265 ALELYLQPEILGERLRTLRLLTQPAEALLAQAGRLAVVELDP 306

Length = 395

>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family

 Score = 47.2 bits (113), Expect = 7e-06
 Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 22/164 (13%)

Query: 216 EEKMSALEGAESTVIMASGMSAST-VMLLALVPAGGHIVTTTDCYRK----------TRI 264
           +E  +   GA+ T  + +G S+S   ++LA+   G  I+   +C++             +
Sbjct: 65  QELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPV 124

Query: 265 FIET-VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH 323
           +++    P  GI A  I P   +  +A + + +       +PT  +  C +++ + +  H
Sbjct: 125 YLKPERNPYYGI-AGGIPPETFK--KALIEHPDAKAAVITNPT-YYGICYNLRKIVEEAH 180

Query: 324 KKGAIVCID---GT---FATPLNQKALSLGADLVLHSATKFIGG 361
            +G  V +D   G    F   L   A   GAD+V+ S  K +  
Sbjct: 181 HRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTHKTLPA 224

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. Length = 294

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 216 EEKMSAL--EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
           EEK++ L   G +  V + SG  A+   LLAL+  G  ++   + +  +R ++   L   
Sbjct: 6   EEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGH-GSRYWVAAELAGA 64

Query: 274 GITATVIDPADMEG-----LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAI 328
                 +D A   G     LE      NV+L      T      V +K +  +  + G +
Sbjct: 65  KPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGIL 124

Query: 329 VCIDGTFATPLNQKALSL----GADLVLHSATKFIGG 361
           + +D   A   +     L    GAD+V  S  K +GG
Sbjct: 125 LLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGG 161

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|112645 pfam03841, SelA, L-seryl-tRNA selenium transferase

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 36/172 (20%)

Query: 289 EAALNNNNVSLFFTESPTNP----FLRCVDVKLVSDLCHKKGAIV--------CID---- 332
           E A+N N   L    + +N     F + V +  +  L  + G  V         +D    
Sbjct: 130 EQAINENTALLMKVHT-SNYRIQGFTKEVSLAELVALGKEHGLPVYYDLGSGSLVDLSQY 188

Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---------- 382
           G    P  Q+ L+LG DLV  S  K +GG     AG I G  +L+ +++           
Sbjct: 189 GLPKEPTVQELLALGVDLVSFSGDKLLGG---PQAGIIVGKKELIERLKKNPLKRALRVD 245

Query: 383 ------LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHP 428
                 L   L   LNP   Y  I  ++ L   +++  + A R+ K+L+A  
Sbjct: 246 KLTLAALEATLRLYLNPEKLYEKIPTLRLLTQPLKELRAKAERLQKLLKARL 297

Length = 367

>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 39/253 (15%)

Query: 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTR 263
           YG  G+PT   +E++++ L G E+ + + SG  A+ + L+A    G  ++    C     
Sbjct: 28  YG--GDPTVNRLEDRVAELFGKEAALFVPSGTMANQLALMAHCRRGDEVI----CGEPAH 81

Query: 264 IFI-ETVLPKM--GITATVIDPA-----DMEGLEAAL------NNNNVSLFFTESPTNPF 309
           I+  ET       G     +  A     D+E LEAA+      +     L   E+  N  
Sbjct: 82  IYFDETGGHAELGGAQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSA 141

Query: 310 L-RCV---DVKLVSDLCHKKGAIVCIDGT-F---ATPLNQ--KALSLGADLVLHSATKFI 359
             + V   +++ +  +  + G  + +DG      A  L    K ++  AD V  S +K +
Sbjct: 142 GGQVVSLEELREIRAIAREHGIPLHLDGARLANAAVALGVIVKEITSYADSVSMSLSKGL 201

Query: 360 GGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL---RVQQQNS 415
           G       GS+ +GS   +   R     LGG +   A  L   G++ L     R+ + ++
Sbjct: 202 G----APVGSVLAGSDDFIAYARRQRKYLGGGMR-QAGVLAAAGLRALEEGVARLGRDHA 256

Query: 416 TALRMAKILEAHP 428
           TA R+A+ LE   
Sbjct: 257 TARRLAEGLELLR 269

Length = 288

>gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase; Validated

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKL---VSDLCHKKGAIVCIDGTF-------ATPLNQ 341
           LNN N  L F  SP NP    +       +S++C KKGA++ ID  F       A     
Sbjct: 118 LNNYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVL 177

Query: 342 KALSLGADLVLHSATKFIG 360
              S G  ++  S TK +G
Sbjct: 178 LNRSYGNVIIGRSLTKILG 196

Length = 332

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 17/160 (10%)

Query: 215 VEEKMSALEGAEST--VIMASGMSAS--TVM--LLALVPAGGHIVTTTDCYRKTRIFIET 268
             EK++    A S   +I  SG + +   V   L   +  G  I+ T   +    +  + 
Sbjct: 48  AREKVAEFINAPSDEEIIFTSGTTEAINLVAISLGRSLKPGDEILVTEMEHHANLVPWQE 107

Query: 269 VLPKMGITATVI--DPA---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH 323
           +  + G T  VI  DP    D++ LE  L      +  T   +N       V+ +  L H
Sbjct: 108 LAKRTGATVRVIPVDPNGLLDLDALEKLLTPRTKLVAITHV-SNVTGTVNPVEEIGKLAH 166

Query: 324 KKGAIVCIDGTFA---TPLNQKALSLGADLVLHSATKFIG 360
           + GA+V +D   A    P++ +A  LG D +  S  K  G
Sbjct: 167 EYGALVVVDAAQAVGHRPIDVQA--LGVDFLAFSGHKLYG 204

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	466
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	100.0
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	100.0
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	100.0
PRK08114	395	cystathionine beta-lyase; Provisional	100.0
PRK09028	394	cystathionine beta-lyase; Provisional	100.0
PRK05967	395	cystathionine beta-lyase; Provisional	100.0
PRK08861	388	cystathionine gamma-synthase; Provisional	100.0
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	100.0
PRK08249	398	cystathionine gamma-synthase; Provisional	100.0
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	100.0
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	100.0
PRK08045	386	cystathionine gamma-synthase; Provisional	100.0
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	100.0
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK05939	397	hypothetical protein; Provisional	100.0
PRK07503	403	methionine gamma-lyase; Provisional	100.0
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	100.0
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	100.0
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	100.0
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	100.0
PRK07049	427	methionine gamma-lyase; Validated	100.0
PRK07050	394	cystathionine beta-lyase; Provisional	100.0
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	100.0
PRK08574	385	cystathionine gamma-synthase; Provisional	100.0
PRK08776	405	cystathionine gamma-synthase; Provisional	100.0
PRK07671	377	cystathionine beta-lyase; Provisional	100.0
PRK06234	400	methionine gamma-lyase; Provisional	100.0
PRK07811	388	cystathionine gamma-synthase; Provisional	100.0
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK06460	376	hypothetical protein; Provisional	100.0
PLN02509	464	cystathionine beta-lyase	100.0
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	100.0
PRK06767	386	methionine gamma-lyase; Provisional	100.0
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	100.0
PRK07582	366	cystathionine gamma-lyase; Validated	100.0
PRK06434	384	cystathionine gamma-lyase; Validated	100.0
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	100.0
PLN02242	418	methionine gamma-lyase	100.0
PRK08064	390	cystathionine beta-lyase; Provisional	100.0
PRK05968	389	hypothetical protein; Provisional	100.0
PRK07269	364	cystathionine gamma-synthase; Reviewed	100.0
PRK08247	366	cystathionine gamma-synthase; Reviewed	100.0
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.93
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.92
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.91
PRK04311	464	selenocysteine synthase; Provisional	99.91
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.91
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.91
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.9
PRK07324	373	transaminase; Validated	99.89
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.89
PRK06207	405	aspartate aminotransferase; Provisional	99.89
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.89
PLN02721	353	threonine aldolase	99.89
PRK05957	389	aspartate aminotransferase; Provisional	99.89
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.89
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.89
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.89
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.88
PRK07179	407	hypothetical protein; Provisional	99.88
PRK07681	399	aspartate aminotransferase; Provisional	99.88
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.88
PRK06290	410	aspartate aminotransferase; Provisional	99.88
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.88
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.88
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.87
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.87
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.87
PRK12414	384	putative aminotransferase; Provisional	99.87
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.87
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.87
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.87
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.87
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.87
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.87
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.87
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.87
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.87
PRK06108	382	aspartate aminotransferase; Provisional	99.87
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.87
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.87
PRK08361	391	aspartate aminotransferase; Provisional	99.87
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.87
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.86
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.86
PRK05764	393	aspartate aminotransferase; Provisional	99.86
PRK08960	387	hypothetical protein; Provisional	99.86
PLN00175	413	aminotransferase family protein; Provisional	99.86
PRK06348	384	aspartate aminotransferase; Provisional	99.86
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.86
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.86
PRK06225	380	aspartate aminotransferase; Provisional	99.86
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.86
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.86
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.86
PRK09082	386	methionine aminotransferase; Validated	99.86
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.86
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.86
PLN02483	489	serine palmitoyltransferase	99.86
PRK08068	389	transaminase; Reviewed	99.86
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.86
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.85
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.85
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.85
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.85
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.85
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.85
PLN02187	462	rooty/superroot1	99.85
PRK13392	410	5-aminolevulinate synthase; Provisional	99.85
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.85
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.85
PRK05942	394	aspartate aminotransferase; Provisional	99.85
PRK07337	388	aminotransferase; Validated	99.85
PRK07550	386	hypothetical protein; Provisional	99.85
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.85
PRK07682	378	hypothetical protein; Validated	99.85
PLN02656	409	tyrosine transaminase	99.85
PRK07777	387	aminotransferase; Validated	99.85
PRK09105	370	putative aminotransferase; Provisional	99.85
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.85
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.85
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.84
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.84
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.84
PLN02368	407	alanine transaminase	99.84
PRK03321	352	putative aminotransferase; Provisional	99.84
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.84
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.84
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.84
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.84
PTZ00433	412	tyrosine aminotransferase; Provisional	99.84
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.84
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.84
PRK10534	333	L-threonine aldolase; Provisional	99.84
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.84
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.84
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.84
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.84
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.84
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.84
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.84
PRK09148	405	aminotransferase; Validated	99.84
PLN02651	364	cysteine desulfurase	99.84
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.84
PRK08912	387	hypothetical protein; Provisional	99.84
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.84
PRK07683	387	aminotransferase A; Validated	99.83
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.83
PRK13393	406	5-aminolevulinate synthase; Provisional	99.83
PRK02948	381	cysteine desulfurase; Provisional	99.83
PRK08175	395	aminotransferase; Validated	99.83
PRK06107	402	aspartate aminotransferase; Provisional	99.83
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.83
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.83
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.83
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.83
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.83
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.83
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.83
PRK07568	397	aspartate aminotransferase; Provisional	99.83
PRK08363	398	alanine aminotransferase; Validated	99.83
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.83
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.82
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.82
PLN02822	481	serine palmitoyltransferase	99.82
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.82
PRK09265	404	aminotransferase AlaT; Validated	99.82
PTZ00377	481	alanine aminotransferase; Provisional	99.82
PRK09064	407	5-aminolevulinate synthase; Validated	99.82
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.82
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.82
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.82
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.82
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.82
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.81
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.81
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.81
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.81
PRK08636	403	aspartate aminotransferase; Provisional	99.81
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.81
PLN02409	401	serine--glyoxylate aminotransaminase	99.81
PRK14012	404	cysteine desulfurase; Provisional	99.8
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.8
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.8
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.8
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.8
PRK05839	374	hypothetical protein; Provisional	99.8
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.8
PLN02231	534	alanine transaminase	99.8
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.79
PRK06836	394	aspartate aminotransferase; Provisional	99.79
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.79
PRK06855	433	aminotransferase; Validated	99.79
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.78
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.78
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.78
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.78
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.78
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.78
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.78
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.78
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.77
PRK08354	311	putative aminotransferase; Provisional	99.77
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.77
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.77
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.77
PTZ00376	404	aspartate aminotransferase; Provisional	99.77
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.77
PRK07908	349	hypothetical protein; Provisional	99.76
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.76
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.76
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.76
PLN02955	476	8-amino-7-oxononanoate synthase	99.75
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.75
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.75
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.75
PLN02397	423	aspartate transaminase	99.74
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.74
PRK09275	527	aspartate aminotransferase; Provisional	99.74
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.74
PLN02672	1082	methionine S-methyltransferase	99.74
PRK02769	380	histidine decarboxylase; Provisional	99.73
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.73
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.73
PLN03032	374	serine decarboxylase; Provisional	99.73
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.72
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.72
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.71
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.71
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.71
PRK02627	396	acetylornithine aminotransferase; Provisional	99.71
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.7
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.7
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.7
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.69
PLN02724	805	Molybdenum cofactor sulfurase	99.69
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.69
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.69
PRK08637	388	hypothetical protein; Provisional	99.67
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.67
PRK07505	402	hypothetical protein; Provisional	99.67
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.66
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.66
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.65
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.64
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.63
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.63
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.63
PRK15029	755	arginine decarboxylase; Provisional	99.63
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.62
PLN02271	586	serine hydroxymethyltransferase	99.62
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.61
PLN02624	474	ornithine-delta-aminotransferase	99.61
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.61
PRK13237	460	tyrosine phenol-lyase; Provisional	99.59
PRK13578	720	ornithine decarboxylase; Provisional	99.56
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.56
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.56
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.55
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.55
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.55
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.54
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.53
PLN02263	470	serine decarboxylase	99.52
PLN00144	382	acetylornithine transaminase	99.52
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.52
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.51
PRK04260	375	acetylornithine aminotransferase; Provisional	99.51
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.5
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.5
PLN02880	490	tyrosine decarboxylase	99.5
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.5
PRK03080	378	phosphoserine aminotransferase; Provisional	99.49
PLN02590	539	probable tyrosine decarboxylase	99.49
PRK05367	954	glycine dehydrogenase; Provisional	99.48
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.48
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.47
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.47
PRK12403	460	putative aminotransferase; Provisional	99.46
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.45
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.45
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.45
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	99.45
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.45
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.45
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.44
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.44
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.44
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.44
PRK15400	714	lysine decarboxylase CadA; Provisional	99.43
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.43
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.43
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.42
PRK06105	460	aminotransferase; Provisional	99.42
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.4
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.39
PRK07046	453	aminotransferase; Validated	99.39
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.39
COG4100	416	Cystathionine beta-lyase family protein involved i	99.38
PRK12566	954	glycine dehydrogenase; Provisional	99.38
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.38
PRK06541	460	hypothetical protein; Provisional	99.37
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.37
PRK07482	461	hypothetical protein; Provisional	99.37
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.37
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.37
PRK05367	954	glycine dehydrogenase; Provisional	99.37
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.37
PRK05965	459	hypothetical protein; Provisional	99.37
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.35
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.34
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.34
PRK07678	451	aminotransferase; Validated	99.34
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.34
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.34
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.33
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.33
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.32
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.32
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.32
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.32
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.31
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.31
PRK07480	456	putative aminotransferase; Validated	99.31
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.3
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.3
PRK06062	451	hypothetical protein; Provisional	99.3
PRK07481	449	hypothetical protein; Provisional	99.3
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.3
PRK07036	466	hypothetical protein; Provisional	99.3
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.29
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.29
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.28
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.28
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.26
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.26
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.24
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.24
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.24
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.23
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.23
PRK06149	972	hypothetical protein; Provisional	99.23
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.22
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.22
PRK06917	447	hypothetical protein; Provisional	99.21
PRK07483	443	hypothetical protein; Provisional	99.2
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	99.2
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.19
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.17
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.17
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.14
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.13
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.12
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.12
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	99.11
PRK06148	1013	hypothetical protein; Provisional	99.11
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.09
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.07
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.06
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.05
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.04
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	98.97
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	98.96
PRK08297	443	L-lysine aminotransferase; Provisional	98.96
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	98.93
PRK12566	954	glycine dehydrogenase; Provisional	98.93
PLN02452	365	phosphoserine transaminase	98.91
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	98.91
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	98.8
PRK12462	364	phosphoserine aminotransferase; Provisional	98.78
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	98.72
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	98.68
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	98.67
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	98.42
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.35
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	98.31
KOG0629	510	consensus Glutamate decarboxylase and related prot	98.08
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	98.01
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	97.89
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	97.86
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	97.85
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	97.8
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	97.71
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	97.58
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	97.42
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	96.72
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	96.26
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	95.96
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	95.84
PF02310	121	B12-binding: B12 binding domain; InterPro: IPR0061	87.9
cd02067	119	B12-binding B12 binding domain (B12-BD). This doma	83.06

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=2.5e-64  Score=517.35  Aligned_cols=311  Identities=42%  Similarity=0.711  Sum_probs=290.9

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      ++.|+++|.|++.  +..++++++|||+++||.|++.++..+.+.+...+|.|+|.+||++..||+++++++|++.++.+
T Consensus         7 ~~~T~~v~~g~~~--~~~~gav~~PI~~tStf~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~lE~~~a~LEg~~~~~af   84 (396)
T COG0626           7 SLTTRLVHAGRRP--DDLTGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRTGNPTRDALEEALAELEGGEDAFAF   84 (396)
T ss_pred             ccceeeEEccccc--ccCCCcccCCeeeeeeecccChhhhhhhccccccCcccccCCCccHHHHHHHHHHhhCCCcEEEe
Confidence            5889999999875  34689999999999999999998776666666778999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +|||+||.+++.+++++||+|++++..|++++.++...++++|+++.++|..+.+++++++.+.+|++||+|+|+||+..
T Consensus        85 sSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~  164 (396)
T COG0626          85 SSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLE  164 (396)
T ss_pred             cCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccc
Confidence            99999999999999999999999999999999999999999999999999988888888887434999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCH-HHHHHHHHHHH-HhCC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHH-VLGG  389 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~-eli~~l~~~~~-~~G~  389 (466)
                      +.||++|+++||++|+++||||||++|++++|+++|+|||++|+|||++||+|+++|++++++ ++.+.+....+ .+|.
T Consensus       165 v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~  244 (396)
T COG0626         165 VPDIPAIARLAKAYGALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGA  244 (396)
T ss_pred             cccHHHHHHHHHhcCCEEEEECCcccccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999999999999999999999999999999999999888765 45556555555 5999


Q ss_pred             CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       390 ~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      .++|++||+++||++||..||+++++|++++++||++||+|++|+||+|++||+|++++|||+|+||||||+|++
T Consensus       245 ~l~p~dA~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~  319 (396)
T COG0626         245 VLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKN  319 (396)
T ss_pred             CCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=1.8e-62  Score=507.34  Aligned_cols=309  Identities=44%  Similarity=0.776  Sum_probs=278.0

Q ss_pred             ccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCC
Q 012296          154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMAS  233 (466)
Q Consensus       154 ~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sS  233 (466)
                      +|++||+|..++. ..++++.||||+|+||.|++.+++ +.+.+...+|.|+|++||++..||+.|++++|++.+++++|
T Consensus         1 ~T~~vh~g~~~~~-~~~~~v~~pi~~sstf~~~~~~~~-~~~~~~~~~~~Y~R~gnPt~~~le~~la~Le~g~~a~~~~S   78 (386)
T PF01053_consen    1 ETLLVHAGRDPDE-DQTGAVNPPIYQSSTFVFDSAEEL-DAFAGEEKGYIYSRYGNPTVRALEQRLAALEGGEDALLFSS   78 (386)
T ss_dssp             HHHHHHTTTTGGT-STTTBSS--B---SBBBBSSHHHH-HHHTTSSSSCSBTTTC-HHHHHHHHHHHHHHT-SEEEEESS
T ss_pred             CcceEeCCCCCCC-CCCCCeeCCccccccCcccchHHH-HhhcCCCCCcceeccccccHHHHHHHHHHhhcccceeeccc
Confidence            4899999988642 358999999999999999999988 77778888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccc
Q 012296          234 GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV  313 (466)
Q Consensus       234 Gs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~  313 (466)
                      ||+|+.+++.+++++||+|++.+..|++++.++...+...|+++.++|..|+++|+++++++ |++||+|+|+||++.+.
T Consensus        79 GmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~-t~~v~~EspsNP~l~v~  157 (386)
T PF01053_consen   79 GMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPN-TKLVFLESPSNPTLEVP  157 (386)
T ss_dssp             HHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTT-EEEEEEESSBTTTTB--
T ss_pred             hHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhcccc-ceEEEEEcCCCcccccc
Confidence            99999999999999999999999999999999998899999999999999999999999985 99999999999999999


Q ss_pred             cHHHHHHHHHhcC-CEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCH--HHHHHHHHHHHHhCCC
Q 012296          314 DVKLVSDLCHKKG-AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG--KLVTQIRNLHHVLGGA  390 (466)
Q Consensus       314 dl~~Ia~la~~~g-illIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~--eli~~l~~~~~~~G~~  390 (466)
                      ||++|+++||++| +++++|+||++++.++|+.+|+|++++|+|||++||+|+++|+++.++  +++++++..+..+|..
T Consensus       158 Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~  237 (386)
T PF01053_consen  158 DLEAIAKLAKEHGDILVVVDNTFATPYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGAT  237 (386)
T ss_dssp             -HHHHHHHHHHTTT-EEEEECTTTHTTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B
T ss_pred             cHHHHHHHHHHhCCceEEeeccccceeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCcc
Confidence            9999999999998 999999999999999999999999999999999999999999999764  7888999999999999


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEeccC
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLME  465 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~~  465 (466)
                      ++|++||+++|+++|+..||+++++|+++|+++|++||.|++|+||+|++||+|+++++||+|+||||||+++++
T Consensus       238 ~~p~da~ll~rgl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~  312 (386)
T PF01053_consen  238 LSPFDAWLLLRGLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGG  312 (386)
T ss_dssp             --HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSH
T ss_pred             chHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999873

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=100.00  E-value=4.8e-62  Score=483.33  Aligned_cols=309  Identities=38%  Similarity=0.632  Sum_probs=290.5

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|++||+|+.   ++.+++..+|||+|++|.|++.+...+.|..+..|+.|+|..||+.+.||++||.++|+-.++.+
T Consensus         7 ~f~T~~vHag~~---d~~t~ara~PIyqtTsy~F~d~~haa~lF~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a~   83 (426)
T COG2873           7 GFETLAVHAGQE---DPTTGARAVPIYQTTSYVFDDTDHAAALFGLKEPGNIYTRIMNPTTDVLEERIAALEGGVAALAV   83 (426)
T ss_pred             CcchhhhcCCCC---CCCCCceecceeeeeeeecCCHHHHHHHhCCCcCCceeeeccCchHHHHHHHHHHhhcchhhhhh
Confidence            589999999988   34589999999999999999999999999999889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      .||++|+..++..++++||+||.....|++++.++...++++|++++++|..|+++++++|+++ ||+||+|+..||-+.
T Consensus        84 aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~n-Tkavf~EtigNP~~~  162 (426)
T COG2873          84 ASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFEAAIDEN-TKAVFAETIGNPGLD  162 (426)
T ss_pred             ccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCCCHHHHHHHhCcc-cceEEEEeccCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999996 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCH--H--------------
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG--K--------------  375 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~--e--------------  375 (466)
                      +.|+++|+++||++|+++|||+|+++++..+|+++|+|||++|+|||+||||..+||+|+-..  +              
T Consensus       163 v~Die~ia~iAh~~gvpliVDNT~atpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~  242 (426)
T COG2873         163 VLDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPD  242 (426)
T ss_pred             ccCHHHHHHHHHHcCCcEEEecCCCcceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCC
Confidence            999999999999999999999999999999999999999999999999999999999997211  1              


Q ss_pred             ----------------HHHHHH-HHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCC
Q 012296          376 ----------------LVTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL  438 (466)
Q Consensus       376 ----------------li~~l~-~~~~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl  438 (466)
                                      ++-+.| ...+.+|.+++|+++|+.+.|++||.+||+|+++|++++++||++||+|.||+||||
T Consensus       243 p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL  322 (426)
T COG2873         243 PSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGL  322 (426)
T ss_pred             ccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCC
Confidence                            111222 345678999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHhhc-CCcceEEEEEecc
Q 012296          439 KSHPEHHIATQQM-TGFGGVVSFEVLM  464 (466)
Q Consensus       439 ~s~p~~~~~~~~~-~g~Gg~vsfel~~  464 (466)
                      ++||+|++++|++ +|+|+|+||++++
T Consensus       323 ~~~~~h~la~kyl~~g~g~vltF~~kg  349 (426)
T COG2873         323 ASHPYHALAKKYLPKGAGAVLTFGVKG  349 (426)
T ss_pred             CCCcchhHHHhhccCCCceEEEEEecC
Confidence            9999999999999 8999999999987

>PRK08114 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=4.4e-61  Score=498.11  Aligned_cols=310  Identities=27%  Similarity=0.458  Sum_probs=290.3

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhccc-CCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRR-ASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~-~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~  230 (466)
                      +++|+++|.|...  ...+++++||||+|+||.|++.+++.+.+.++. .+|.|+|.+||+++.||++||+++|++.+++
T Consensus         5 ~~~t~~~~~~~~~--~~~~~~v~~pi~~sstf~f~~~~~~~~~~~~~~~~~~~YsR~~nPt~~~le~~la~LEg~~~a~~   82 (395)
T PRK08114          5 KLDTQLVNAGRSK--KYTQGSVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQEAMCELEGGAGCAL   82 (395)
T ss_pred             CcchheEeCCCCC--CCCCCCccCCeeCCCceecCCHHHHHHhhccCcCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Confidence            4679999999532  223489999999999999999988877775543 4699999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCc
Q 012296          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (466)
Q Consensus       231 ~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG  310 (466)
                      ++|||+|+.+++.+++++||+||+++..|++++.++...++++|+++.+++..|.++++++++++ |++|++|+|+||+|
T Consensus        83 ~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~~-TrlV~~EtpsNp~~  161 (395)
T PRK08114         83 YPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPN-TKVVFLESPGSITM  161 (395)
T ss_pred             EhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCC-ceEEEEECCCCCCC
Confidence            99999999999999999999999999999999999888888899999999999999999999885 99999999999999


Q ss_pred             ccccHHHHHHHHHhcC--CEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhC
Q 012296          311 RCVDVKLVSDLCHKKG--AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG  388 (466)
Q Consensus       311 ~v~dl~~Ia~la~~~g--illIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G  388 (466)
                      .+.|+++|+++||++|  +++++|+|++.++.++|+++|+|++++|+|||++||+|+++|+++.++++.++++..+..+|
T Consensus       162 ~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G  241 (395)
T PRK08114        162 EVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMG  241 (395)
T ss_pred             EeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhcc
Confidence            9999999999999984  99999999999999999999999999999999999999999999988888888888888899


Q ss_pred             CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       389 ~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ..++|++||+++|+|+||..||+++++|+..++++|++||.|++|+||+|++||+|+++++||+|+|+||||++++
T Consensus       242 ~~~~p~~a~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~  317 (395)
T PRK08114        242 QMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKK  317 (395)
T ss_pred             CCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999985

>PRK09028 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=4.5e-59  Score=483.82  Aligned_cols=310  Identities=30%  Similarity=0.552  Sum_probs=286.8

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhccc-CCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRR-ASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~-~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~  230 (466)
                      +++|+++|.|..+  ....++++||||+|+||.|++.+++.+.+.+.. .+|.|+|.+||+...||++||++++++++++
T Consensus         4 ~~~t~~~~~~~~~--~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~~Y~r~~npt~~~Le~~iA~le~~~~~~~   81 (394)
T PRK09028          4 KKATKIVSAGRDK--KWTKGVINPPVFRASTVVFDTVAEMRHAAKNRANGEMFYGRRGTPTHFAFQAAIVELEGGAGTAL   81 (394)
T ss_pred             CccceeEEcCCCC--CCCCCCccCCeeCCCCcccCCHHHHHHHhccCccCCceecCCCCchHHHHHHHHHHHhCCCcEEE
Confidence            4789999999543  223589999999999999999987766554432 4588999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCc
Q 012296          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (466)
Q Consensus       231 ~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG  310 (466)
                      ++||++|+.+++.+++++||+||++++.|+++..++...++..|+++.+++..+.++++++++++ ||+|++|+|+||+|
T Consensus        82 ~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~-TklV~lespsNPtg  160 (394)
T PRK09028         82 YPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPN-TKVLFLESPGSITM  160 (394)
T ss_pred             ECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcC-ceEEEEECCCCCCC
Confidence            99999999999999999999999999999998887776778899999999887888999999875 99999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCC
Q 012296          311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA  390 (466)
Q Consensus       311 ~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~  390 (466)
                      .+.|+++|+++||++|+++++|++|++++.++|+++|+|++++|+|||++||+|+++|+++.++++.++++..+..+|..
T Consensus       161 ~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~~  240 (394)
T PRK09028        161 EVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQC  240 (394)
T ss_pred             cHHHHHHHHHHHHHcCCEEEEECCccccccCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999988888888888888889999


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++|++||+++|+|+||..||+++++|++.++++|++||+|++|+||+|++||+|++++|||+|+||||||++++
T Consensus       241 ~~p~~a~l~~rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~  314 (394)
T PRK09028        241 TSPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQ  314 (394)
T ss_pred             CCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999983

>PRK05967 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=4.4e-59  Score=483.52  Aligned_cols=306  Identities=32%  Similarity=0.576  Sum_probs=285.6

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|.|...+  ..+++++||||+|+||.|++.+++..    ...+|.|+|.+||+++.||+.|+.+++++.++++
T Consensus        12 ~~~t~~~~~~~~~~--~~~~~~~~Pi~~sst~~~~~~~~~~~----~~~~y~YsR~gnPt~~~Le~~la~le~~~~~v~~   85 (395)
T PRK05967         12 GINTRLAHDGNDPG--DYHGFVNPPVVHASTVLFPDAETMAT----RGQKYTYGTRGTPTTDALCKAIDALEGSAGTILV   85 (395)
T ss_pred             CcccceeeCCCCCC--CCCCCccCCccCCcceecCChHHhhc----ccCCCccCCCCChHHHHHHHHHHHHhCCCCEEEE
Confidence            36799999996542  34689999999999999999876532    2347999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +|||+|+.+++.+++++||+||++++.|++++.++...++.+|+++++++..+.++++++++++ ||+|++|+|+||++.
T Consensus        86 sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~-TklV~lesPsNP~l~  164 (395)
T PRK05967         86 PSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPN-TKVVHTEAPGSNTFE  164 (395)
T ss_pred             CcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcC-ceEEEEECCCCCCCc
Confidence            9999999999999999999999999999999887777788999999999887788999999885 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCc
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL  391 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~l  391 (466)
                      +.|+++|+++||++|+++|+|++|++++.++|+++|+|++++|++||++||+|+++|++++++++.++++..+..+|..+
T Consensus       165 v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~G~~~  244 (395)
T PRK05967        165 MQDIPAIAEAAHRHGAIVMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCA  244 (395)
T ss_pred             HHHHHHHHHHHHHhCCEEEEECCccCceecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999988888888887788899999


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       392 sp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      +|++||+++|+++||..||+++++|+..+++||++||+|++|+||+|++||+|++++|||+|+|||+||++++
T Consensus       245 ~p~da~l~~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~  317 (395)
T PRK05967        245 GPDDTYQILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAA  317 (395)
T ss_pred             CHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999984

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.9e-57  Score=471.36  Aligned_cols=302  Identities=31%  Similarity=0.532  Sum_probs=279.3

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|.|..++  ..+++++||||+|+||.|++..        +..+|.|+|++||+.+.||++||+++|++.++++
T Consensus         5 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~--------~~~~~~Y~R~~npt~~~Le~~lA~leg~e~ivvt   74 (388)
T PRK08861          5 KPATIAVRTGIESD--SQYHAVVPPIYLSTNYGFPAFG--------EVPKYDYTRSGNPNRGLLEQTLSELESGKGAVVT   74 (388)
T ss_pred             CcccceeECCCCCC--CCCCCccCCcccCcceEeCCcC--------ccCCccccCCCCchHHHHHHHHHHHhCCCeEEEE
Confidence            47899999996642  3368999999999999998842        2246999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      ++|++|+.+++.+++++||+|+++++.|++++..+...+...|+++.+++..|+++++++++++ +++|++|+|+||+|.
T Consensus        75 ~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~-tklV~lesP~NPtG~  153 (388)
T PRK08861         75 NCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKK-PKLILLETPSNPLVR  153 (388)
T ss_pred             CCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcC-CeEEEEECCCCCCCc
Confidence            9999999999999999999999999999988877766566778999999988999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhCCC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA  390 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G~~  390 (466)
                      +.|+++|.++|+++|+++|+|++|+.+..+.++.+|+|++++|+|||++||+++++|+++++ +++.++++.++..+|..
T Consensus       154 v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~  233 (388)
T PRK08861        154 VVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGAT  233 (388)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCccccccCCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCC
Confidence            99999999999999999999999999888889999999999999999999999999999875 57778888888899999


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++|+++|+++|+|+||..||+++++|+++++++|++||.|.+|+||+|++||+|+++++||+|+||||||++++
T Consensus       234 ~~p~~a~l~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~  307 (388)
T PRK08861        234 GTPFDSYMTLRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAG  307 (388)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999974

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.3e-56  Score=469.50  Aligned_cols=309  Identities=29%  Similarity=0.508  Sum_probs=281.3

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|.|..+  .. +++++||||+++||.|++.+++.+.+.....+|.|+|.+||++++||+.+|+++|++.++++
T Consensus         6 ~~~t~~~~~g~~~--~~-~~~~~~PI~~sst~~f~~~~~~~~~~~~~~~g~~ysR~~nPtv~~lE~~la~leg~~~av~~   82 (432)
T PRK06702          6 GKGTICVQGGYTP--KN-GEPRVLPLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVAT   82 (432)
T ss_pred             CcchHheeCCCCC--CC-CCCccCCccCCcceecCCHHHHHHHHhccccCceeECCCCcHHHHHHHHHHHHhCCCcEEEE
Confidence            3689999999643  22 68999999999999999998877766655567999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-CCHHHHHHhhcCCCceEEEEeCCCCCCc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-ADMEGLEAALNNNNVSLFFTESPTNPFL  310 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-~Dle~Le~ai~~~~tklV~lesP~NPtG  310 (466)
                      +|||+|+.+++.+++++||+||++.+.|.++..++...+..+|++++++|. .|+++++++|+++ ||+|++|+|+||++
T Consensus        83 ~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~-Tk~I~~e~pgnP~~  161 (432)
T PRK06702         83 ASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDK-TKLVYAESLGNPAM  161 (432)
T ss_pred             CCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcC-CeEEEEEcCCCccc
Confidence            999999999999999999999999999999998887777889999999998 4899999999985 99999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCH----------HH----
Q 012296          311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG----------KL----  376 (466)
Q Consensus       311 ~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~----------el----  376 (466)
                      .+.|+++|+++|+++|+++|+|+||++|+.++|+++|+||+++|+|||++||+++++|+++...          ++    
T Consensus       162 ~v~Di~~I~~iA~~~gi~livD~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~  241 (432)
T PRK06702        162 NVLNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPD  241 (432)
T ss_pred             cccCHHHHHHHHHHcCCEEEEECCCCchhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999988422          11    


Q ss_pred             -----------------HHHH-HHHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCC
Q 012296          377 -----------------VTQI-RNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL  438 (466)
Q Consensus       377 -----------------i~~l-~~~~~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl  438 (466)
                                       +.+. ......+|..++|+++|+++++|++++.|++++++|+.+|+++|++||+|.+|+||++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl  321 (432)
T PRK06702        242 PSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGL  321 (432)
T ss_pred             ccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCC
Confidence                             1112 2345577899999999999999999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHhhc-CCcceEEEEEecc
Q 012296          439 KSHPEHHIATQQM-TGFGGVVSFEVLM  464 (466)
Q Consensus       439 ~s~p~~~~~~~~~-~g~Gg~vsfel~~  464 (466)
                      ++||+|++++||| +|+||||||+|++
T Consensus       322 ~~~p~~~l~~~~~~~g~gg~~sf~l~~  348 (432)
T PRK06702        322 DSNENYSLAQKYLKKGASGVLTFGIKG  348 (432)
T ss_pred             CCCccHHHHHHhCcCCCceEEEEEecC
Confidence            9999999999999 7999999999974

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=5.7e-57  Score=458.31  Aligned_cols=313  Identities=41%  Similarity=0.659  Sum_probs=287.7

Q ss_pred             ccCCCcccceeccCCcCCCCCCCCcccCCccccCCCccCCh-HHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCC
Q 012296          148 SFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT-AELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAE  226 (466)
Q Consensus       148 ~~~~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~-~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e  226 (466)
                      +++.+++|.++|+|+.+++. ..+++.||||.+++++|+.. .......  +..+|+|+|.+||++..+|+.+++++|++
T Consensus        17 ~~~~~~~t~~~~~g~~~~~~-~~~~v~~pI~~~~s~tfk~~~~~~~~~~--~~~~~~Ysr~~nPt~~~le~~iaal~ga~   93 (409)
T KOG0053|consen   17 SRLSHLDTNLLHAGQDPEKA-IHNAVAPPIYATLSTTFKQDLNEGEHGG--NLDGYDYSRSGNPTRDVLESGIAALEGAA   93 (409)
T ss_pred             hhccccchhhhhcccccchh-ccccccCceecccceeecccCccccccc--cccccccccCCCCchHHHHHHHHHHhCCc
Confidence            34467999999999987543 47899999997777777765 2222111  11259999999999999999999999999


Q ss_pred             cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCC
Q 012296          227 STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPT  306 (466)
Q Consensus       227 ~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~  306 (466)
                      .+++++|||+|+..++..++++|++|++.+..|++|+.+++..++++|++..++|..|++.++++++++ |++||+|+|+
T Consensus        94 ~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~~~~~~~~~i~~~-t~~V~~ESPs  172 (409)
T KOG0053|consen   94 HALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVDDLKKILKAIKEN-TKAVFLESPS  172 (409)
T ss_pred             eEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechhhHHHHHHhhccC-ceEEEEECCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999984 9999999999


Q ss_pred             CCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHH
Q 012296          307 NPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHH  385 (466)
Q Consensus       307 NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~  385 (466)
                      ||++.+.||++|+++||++|+++|||+|++++++++++.+|+|||++|+|||++||+|+++|+++.+ +++.++++..+.
T Consensus       173 NPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~  252 (409)
T KOG0053|consen  173 NPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQE  252 (409)
T ss_pred             CCccccccHHHHHHHHhhCCCEEEEeCCcCcccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999997 899999999999


Q ss_pred             HhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          386 VLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       386 ~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      .+|++++|+.+|+.+|+++++..|++++.+|+..++++|+++|++++|+||+|++||+|+++++|++|.+|+++|.++.
T Consensus       253 ~lg~~~~p~~~~ll~Rglktl~lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~~~~g~~G~l~~~~~~  331 (409)
T KOG0053|consen  253 DLGWCEDPFDLFLLSRGLKTLHLRINKHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKRQKKGGYGGLSSVIFG  331 (409)
T ss_pred             HhcCCCCHHHHHHHhcCcchhhhhHHHHHHHHHHHHHHhhhCCceeEEEcCCCCCCccHHHHHhhhcCCcceEEEEEcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998776667776654

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=7.6e-56  Score=461.36  Aligned_cols=310  Identities=42%  Similarity=0.701  Sum_probs=288.2

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|+|...+  ..+++++||||+++||.|++.+++.+.+.++..+|.|+|+++|+.++||+.||+++|++.++++
T Consensus         8 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~   85 (398)
T PRK08249          8 GVGTKAVWAGEKEY--LPYGATQVPVVLSVAYGYDDIDEWYDVALGKKPGHIYSRNTNPTVQAFEEKVRILEGAEAATAF   85 (398)
T ss_pred             CcccceeeCCCCCC--CCCCCccCCccCCcceecCCHHHHHHhhcCCcCCccccCCCChHHHHHHHHHHHHhCCCeEEEe
Confidence            47799999996542  3368999999999999999988776666555567999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +||++|+..++.+++++||+|+++.+.|+++...+...++..|+++.+++..|+++++++++++ |++|++|+|+||+|.
T Consensus        86 ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~-tklV~ie~p~NPtg~  164 (398)
T PRK08249         86 STGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKG-CDLLYLETPTNPTLK  164 (398)
T ss_pred             CChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCC-CeEEEEECCCCCCCc
Confidence            9999999999999999999999999999998877766677889999999999999999999875 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCc
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL  391 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~l  391 (466)
                      +.|+++|.++|+++|+++|+|++|+.++...++.+++|++++|+||+++||++.++|+++++++++++++..+...|..+
T Consensus       165 v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~  244 (398)
T PRK08249        165 IVDIERLAAAAKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATM  244 (398)
T ss_pred             cCCHHHHHHHHHHcCCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999998877777788999999999999999999889999999999999998888889999


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       392 sp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      +++.+|+++++++++..|++++++|++.++++|++||.|++|+||||++||+|+++++||+|+||||||++++
T Consensus       245 s~~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~  317 (398)
T PRK08249        245 DPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKG  317 (398)
T ss_pred             CHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999975

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=100.00  E-value=3.7e-55  Score=456.84  Aligned_cols=309  Identities=37%  Similarity=0.584  Sum_probs=286.5

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|+|..+  . .++++.+|||+++||.|++.+++.+.+.+...+|.|+|++||+.++||+.||+++|.++++++
T Consensus        15 ~~~t~~~~~~~~~--~-~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~al~~   91 (403)
T PRK07810         15 SQATIGVRGGLLR--S-GFEETAEALYLTSGYVYESAAAAEAAFTGELDRFVYSRYGNPTVSMFEERLRLIEGAEACFAT   91 (403)
T ss_pred             CcchhheeCCCCC--C-CCCCccCCccCCCccccCCHHHHHHHhccCcCCcceeCCCCchHHHHHHHHHHHhCCCcEEEE
Confidence            4689999999653  2 368899999999999999998877766555567899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +|||+|+..++.+++++||+|++++..|++++..+...++..|+++.+++..|+++++++++++ +++|++|+|+||+|.
T Consensus        92 ~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~-tklV~~esp~Nptg~  170 (403)
T PRK07810         92 ASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVP-TQAVFFETPSNPMQS  170 (403)
T ss_pred             CChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcC-ceEEEEECCCCCCCe
Confidence            9999999999999999999999999999998888777788889999999999999999999885 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHH-HHHHHHHHhCCC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVLGGA  390 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~-~l~~~~~~~G~~  390 (466)
                      +.|+++|+++|+++|+++|+|++|+.+..++++.+|+|++++|++|+++|+|+++||+++++++++. +++.+....|..
T Consensus       171 v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~  250 (403)
T PRK07810        171 LVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPA  250 (403)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCCCccccCChhhcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999988888888999999999999999999999999999987665 577777788999


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++++.+|+++++|+++..|++++++|+++++++|+++|+|.+|+||+|++||+|++++|||+|+|+|+||++++
T Consensus       251 ~s~~~a~l~l~~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~  324 (403)
T PRK07810        251 LSAFNAWVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDA  324 (403)
T ss_pred             CCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999985

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=100.00  E-value=6.8e-55  Score=451.11  Aligned_cols=303  Identities=29%  Similarity=0.530  Sum_probs=278.4

Q ss_pred             cceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCH
Q 012296          155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASG  234 (466)
Q Consensus       155 t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSG  234 (466)
                      |+++|.|..++  ..+++++||||+|+||.|++.++..    ....+|.|+|.+||+...||++||+++|++++++++||
T Consensus         1 t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~----~~~~~~~Y~r~gnPt~~~lE~~lA~l~g~~~~~~~~sG   74 (377)
T TIGR01324         1 TRLIHSGRQPR--FSQGSVNPPLQRASTVLFDSHAAQR----RAKGELTYGRRGTLTHFALQDAMCELEGGAGCYLYPSG   74 (377)
T ss_pred             CeeEECCCCCC--CCCCCccCCeeCCCceeeCChhhhc----CCcCCCcccCCCCccHHHHHHHHHHHhCCCcEEEECcH
Confidence            56889986532  2368999999999999999864321    23357999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc
Q 012296          235 MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD  314 (466)
Q Consensus       235 s~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d  314 (466)
                      ++|+.+++.+++++||+||++++.|+++..++...++..|+++.+++..+.++++++++++ ||+|++|+|+||+|.+.|
T Consensus        75 ~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~-tklV~lesp~Np~g~~~d  153 (377)
T TIGR01324        75 LAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPN-TKVLFLEAPSSITFEIQD  153 (377)
T ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCC-ceEEEEECCCCCCCcHHH
Confidence            9999999999999999999999999998777655667789999998876668999999875 999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHH
Q 012296          315 VKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN  394 (466)
Q Consensus       315 l~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~  394 (466)
                      +++|+++|+++|+++|+|++|+.+..++++.+|+|++++|++||++||+|+++|+++++++++++++.....+|..++|+
T Consensus       154 l~~I~~la~~~g~~livD~t~a~g~~~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~  233 (377)
T TIGR01324       154 IPAIAKAARNPGIVIMIDNTWAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDAD  233 (377)
T ss_pred             HHHHHHHHHHcCCEEEEECCCccccccCccccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHH
Confidence            99999999999999999999999988899999999999999999999999999999999998888887788899999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          395 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       395 ~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      .+|+++++++++..||+++++|+.+++++|++||.|.+|+||+|++||+|+++++||+|+|+|+||+|++
T Consensus       234 ~a~~~~rgl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~  303 (377)
T TIGR01324       234 DAYTTLRGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQR  303 (377)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999985

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.2e-54  Score=450.66  Aligned_cols=303  Identities=32%  Similarity=0.547  Sum_probs=278.6

Q ss_pred             CCcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 012296          151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (466)
Q Consensus       151 ~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~  230 (466)
                      ++++|+++|.|...+  ..+++++||||+++||.|++.++        ..+|.|+|++||+.+.|+++||+++|.+.+++
T Consensus         3 ~~~~t~~~~~~~~~~--~~~~~~~~pi~~~s~~~~~~~~~--------~~~~~Y~R~~~pt~~~L~~~lA~l~g~~~~i~   72 (386)
T PRK08045          3 RKQATIAVRSGLNDD--EQYGCVVPPIHLSSTYNFTGFNE--------PRAHDYSRRGNPTRDVVQRALAELEGGAGAVL   72 (386)
T ss_pred             CCcccceeEcCCCCC--CCCCCccCCccCCcceecCCccc--------cCCceeeCCCCccHHHHHHHHHHHhCCCeEEE
Confidence            467899999996542  34689999999999999988531        23689999999999999999999999988999


Q ss_pred             eCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCc
Q 012296          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (466)
Q Consensus       231 ~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG  310 (466)
                      +++|++|+..++.+++++||+|+++++.|++++..+.......++++.+++..|+++++++++++ +++|++++|+||||
T Consensus        73 ~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~-tklV~l~sP~NPtG  151 (386)
T PRK08045         73 TNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEK-PKLVLVESPSNPLL  151 (386)
T ss_pred             ECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccC-CeEEEEECCCCCCC
Confidence            99999999999999999999999999999988877766666667788888888899999999874 99999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCC
Q 012296          311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGG  389 (466)
Q Consensus       311 ~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~  389 (466)
                      .+.|+++|.++|+++|+++|+|++|+.+....++.+|+|++++|++||++|++++++|++++ +++++++++..+..+|.
T Consensus       152 ~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~  231 (386)
T PRK08045        152 RVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGV  231 (386)
T ss_pred             EecCHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999888888899999999999999999999999999876 57888889888888999


Q ss_pred             CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       390 ~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      .++|+.+|+++++|+++..|++++++|+++++++|++||+|++|+||+|++||+|++++|||+|+||||||++++
T Consensus       232 ~~~p~~~~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~  306 (386)
T PRK08045        232 TGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG  306 (386)
T ss_pred             CCCHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999975

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=100.00  E-value=1.5e-54  Score=450.76  Aligned_cols=309  Identities=37%  Similarity=0.623  Sum_probs=285.2

Q ss_pred             cccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012296          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (466)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~s  232 (466)
                      ++|+++|.|...+  ..+++++||||+++||.|++.+++.+.+.+...+|.|+|+++|+.++||+.||+++|.+.+++++
T Consensus         4 ~~t~~~~~~~~~~--~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~av~~~   81 (391)
T TIGR01328         4 FATRAIHAGYPPK--DQFGALTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGNPTVSNLEGRIAFLEGTEAAVATS   81 (391)
T ss_pred             cccceeeCCccCC--CCCCCccCCcccCcceecCChHHHHHhhcCCcCCCceeCCCCchHHHHHHHHHHHhCCCcEEEEC
Confidence            6799999996542  33689999999999999999988887776666679999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccc
Q 012296          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  312 (466)
Q Consensus       233 SGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v  312 (466)
                      ||++|+.+++.+++++||+|+++.+.|++++..+...+...|+++.++|..|+++++++++++ +++|++|+|+||+|.+
T Consensus        82 sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~~-tklV~le~p~Np~G~v  160 (391)
T TIGR01328        82 SGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKDN-TKIVYFETPANPTMKL  160 (391)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhccC-CeEEEEECCCCCCCcc
Confidence            999999999999999999999999999988887777778889999999999999999999875 9999999999999999


Q ss_pred             ccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH--HHhCCC
Q 012296          313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGA  390 (466)
Q Consensus       313 ~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~--~~~G~~  390 (466)
                      .|+++|.++|+++|+++|+|++++.+....++..|+|++++|++|+++++|++++|+++++++++++++...  ...|..
T Consensus       161 ~dl~~I~~la~~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~  240 (391)
T TIGR01328       161 IDMERVCRDAHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSV  240 (391)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCchhccCCchhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999887778888899999999999999999888999999999998887543  245778


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++++.+|+++++++++..|++++++|++.++++|+++|+|++|+||+|++||+|+++++||+|+||||||++++
T Consensus       241 l~~~~a~l~l~~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~  314 (391)
T TIGR01328       241 ISPFDAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKG  314 (391)
T ss_pred             CCcHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999984

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.8e-54  Score=454.95  Aligned_cols=309  Identities=36%  Similarity=0.606  Sum_probs=281.7

Q ss_pred             cccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012296          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (466)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~s  232 (466)
                      ++|+++|.|...+  ..++++.+|||+|+||.|++.+++.+.+.....+|.|+|.+||+.+.||+.||+++|++.+++++
T Consensus         9 ~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~leg~~~al~~~   86 (431)
T PRK08248          9 LETLAIHAGQEID--PTTGSRAVPIYQTTSYGFRDSEHAANLFSLKEFGNIYTRIMNPTTDVFEKRIAALEGGIGALAVS   86 (431)
T ss_pred             cchhheeCCcCCC--CCCCCccCCeeCCCccccCCHHHHHhhhccccCCceeECCCCchHHHHHHHHHHHhCCCcEEEEC
Confidence            6799999996542  33689999999999999999988887776555679999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccc
Q 012296          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  312 (466)
Q Consensus       233 SGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v  312 (466)
                      ||++|+..++.+++++||+|+++++.|++++..+...++..|+++++++..|+++++++++++ +++|++++|+||+|.+
T Consensus        87 sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~-tklV~l~sp~NPtG~v  165 (431)
T PRK08248         87 SGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDK-TKALFAETIGNPKGDV  165 (431)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCC-CeEEEEECCCCCCCcc
Confidence            999999999999999999999999999998888877788899999999999999999999875 9999999999999999


Q ss_pred             ccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHH----------------
Q 012296          313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL----------------  376 (466)
Q Consensus       313 ~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~el----------------  376 (466)
                      .|+++|+++|+++|+++|+|++++.+..+.++.+|+|++++|++|+++|||+++||+++.+.+.                
T Consensus       166 ~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~  245 (431)
T PRK08248        166 LDIEAVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDP  245 (431)
T ss_pred             cCHHHHHHHHHHcCCEEEEeCCCCccccCChhHcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCcc
Confidence            9999999999999999999999998888888889999999999999999999999998864321                


Q ss_pred             -----------------HHHHHHHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCC
Q 012296          377 -----------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK  439 (466)
Q Consensus       377 -----------------i~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~  439 (466)
                                       ....+..+..+|..++|++||+++++|+||..|++++++|+.+|+++|++||+|++|+||+|+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~  325 (431)
T PRK08248        246 SYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVAKFLEEHEAVEWVSYPGLP  325 (431)
T ss_pred             ccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCC
Confidence                             112234566789999999999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHhhc-CCcceEEEEEecc
Q 012296          440 SHPEHHIATQQM-TGFGGVVSFEVLM  464 (466)
Q Consensus       440 s~p~~~~~~~~~-~g~Gg~vsfel~~  464 (466)
                      +||+|+++++|| +|+||||||+|++
T Consensus       326 s~p~~~~~~~~~~~g~gg~~sf~l~~  351 (431)
T PRK08248        326 SHPSYELAKKYLPKGQGAILTFGIKG  351 (431)
T ss_pred             CCccHHHHHHhCcCCCceEEEEEecC
Confidence            999999999999 7999999999975

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=2.9e-54  Score=453.47  Aligned_cols=309  Identities=36%  Similarity=0.572  Sum_probs=280.1

Q ss_pred             cccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012296          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (466)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~s  232 (466)
                      ++|+++|.|...+  ..++++.||||+|+||.|++.+++.+.++....+|.|+|+.||+.+.||+.|++++|++.+++++
T Consensus        14 ~~t~~~~~~~~~~--~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Ysr~~~p~~~~Le~~lA~l~g~~~av~~s   91 (436)
T PRK07812         14 FETKQIHAGQTPD--PATNARALPIYQTTSYTFDDTDHAAALFGLAEPGNIYTRIMNPTQDVVEQRIAALEGGVAALLLA   91 (436)
T ss_pred             cchhheeCCCCCC--CCCCCccCCCcCCCCcccCCHHHHHHhhcCCcCCccccCCCCchHHHHHHHHHHHhCCCeEEEEc
Confidence            6799999996542  33689999999999999999988887776555678999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC-CCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-PADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       233 SGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      |||+|+.+++.+++++||+||++...|++++..+...+.+.|+++.+++ ..|+++++++++++ +++|++|+|+||+|.
T Consensus        92 SG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~-tklV~ie~~sNp~G~  170 (436)
T PRK07812         92 SGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPN-TKAFFAETISNPQID  170 (436)
T ss_pred             cHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCC-CeEEEEECCCCCCCe
Confidence            9999999999999999999999999999988877666778899999995 66899999999875 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHH----------------
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK----------------  375 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~e----------------  375 (466)
                      +.|+++|+++||++|+++|+|++++.+..++++.+|+|++++|+||+++|+|++++|+++.+..                
T Consensus       171 v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~  250 (436)
T PRK07812        171 VLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDP  250 (436)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCc
Confidence            9999999999999999999999999988889999999999999999999999999999886321                


Q ss_pred             --------------HHHHHH-HHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCC
Q 012296          376 --------------LVTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKS  440 (466)
Q Consensus       376 --------------li~~l~-~~~~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s  440 (466)
                                    ++.+++ ..+...|..++|++||+++++|+||..|++++++|+.+|+++|++||+|++|+||++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s  330 (436)
T PRK07812        251 SYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPS  330 (436)
T ss_pred             ccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCC
Confidence                          111222 35567899999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHhhc-CCcceEEEEEecc
Q 012296          441 HPEHHIATQQM-TGFGGVVSFEVLM  464 (466)
Q Consensus       441 ~p~~~~~~~~~-~g~Gg~vsfel~~  464 (466)
                      ||+|+++++|| +|+||||||+|++
T Consensus       331 ~p~~~~~~~~~~~g~gg~~sf~l~~  355 (436)
T PRK07812        331 SPWYERAKRLAPKGTGAVLSFELAG  355 (436)
T ss_pred             CccHHHHHHhCcCCCceEEEEEecC
Confidence            99999999999 8999999999975

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=4e-54  Score=452.47  Aligned_cols=309  Identities=32%  Similarity=0.479  Sum_probs=278.6

Q ss_pred             cccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012296          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (466)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~s  232 (466)
                      ++|+++|.|...+  ..+++++||||+|+||.|++.+++.+.+.....+|.|+|..+|+++.+|+.+++++|++.+++++
T Consensus        14 ~~t~~~~~~~~~~--~~~~~~~~Pi~~sstf~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~le~~la~l~g~~~~v~fs   91 (437)
T PRK05613         14 FETRSIHAGQSVD--SDTSARNLPIYQTTSYVFDSAEHAKQRFALEDLGPIYSRLTNPTVEALENRIASLEGGVHAVAFA   91 (437)
T ss_pred             cchHheeCCCCCC--CCCCCccCCEeCCCCcccCCHHHHHHhhccccCCceeeCccChHHHHHHHHHHHHhCCCeEEEeC
Confidence            6799999996542  23689999999999999999887776665455679999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC-CCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-PADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       233 SGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      ||++|+.+++.+++++||+||+++..|+++...+...+.+.|++++++| ..|+++++++++++ |++|++++++||+|.
T Consensus        92 SG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~-tk~V~~e~~~Np~~~  170 (437)
T PRK05613         92 SGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPN-TKAFFGETFANPQAD  170 (437)
T ss_pred             CHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCcc-CeEEEEECCCCCCCc
Confidence            9999999999999999999999999999987777677788999999997 56899999999885 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHH----------------
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK----------------  375 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~e----------------  375 (466)
                      +.|+++|+++|+++|+++|+|++++.+..++++.+|+|++++|+||+++|+|+++||+++.+++                
T Consensus       171 v~di~~I~~la~~~gi~livD~t~a~g~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~  250 (437)
T PRK05613        171 VLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYF  250 (437)
T ss_pred             ccCHHHHHHHHHHcCCeEEEECCCccccccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCC
Confidence            9999999999999999999999999888889999999999999999999999999999986422                


Q ss_pred             -------------------HH-HHHHHHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeC
Q 012296          376 -------------------LV-TQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHY  435 (466)
Q Consensus       376 -------------------li-~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~y  435 (466)
                                         +. +........+|..++|++||+++++|+||..||+++++|+.+|+++|++||+|.+|+|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~y  330 (437)
T PRK05613        251 VTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNF  330 (437)
T ss_pred             CCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcceEEC
Confidence                               01 1122455678999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCchHHHHHhhc-CCcceEEEEEecc
Q 012296          436 PGLKSHPEHHIATQQM-TGFGGVVSFEVLM  464 (466)
Q Consensus       436 Pgl~s~p~~~~~~~~~-~g~Gg~vsfel~~  464 (466)
                      |+|++||+|+++++|+ +|+||||||++++
T Consensus       331 Pgl~~~p~~~~~~~~~~~g~gg~~sf~l~~  360 (437)
T PRK05613        331 AGLKDSPWYATKEKLGLKYTGSVLSFDIKG  360 (437)
T ss_pred             CCCCCCccHHHHHHhcCCCCceEEEEEecC
Confidence            9999999999999997 7899999999974

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=8.9e-54  Score=449.10  Aligned_cols=309  Identities=35%  Similarity=0.559  Sum_probs=278.7

Q ss_pred             cccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012296          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (466)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~s  232 (466)
                      ++|+++|.|...+  ..++++.||||+|+||.|++.+++.+.+.++..+|.|+|.++|+.++||+.||+++|.+.+++++
T Consensus         3 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~g~~~~l~~s   80 (425)
T PRK06084          3 LETLAIHAGYSPD--PTTKAVAVPIYQTTSYAFDDTQHGADLFDLKVPGNIYTRIMNPTNDVLEQRVAALEGGVGALAVA   80 (425)
T ss_pred             cchhheeCCcCCC--CCCCCccCCEeCCCCcccCCHHHHHHhhccccCCccccCCCCchHHHHHHHHHHHhCCCceeEeh
Confidence            5789999996542  33689999999999999999988887776555679999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccc
Q 012296          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  312 (466)
Q Consensus       233 SGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v  312 (466)
                      ||++|+.+++.+++++||+|+++.+.|++++..+...++..|+++.+++..|+++++++++++ +++|++++|+||+|.+
T Consensus        81 sG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~~-tklV~lesp~NPtG~v  159 (425)
T PRK06084         81 SGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDER-TKAVFCESIGNPAGNI  159 (425)
T ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhccC-CcEEEEeCCCCCCCee
Confidence            999999999999999999999999999988877766677789999999988999999999875 9999999999999999


Q ss_pred             ccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHH--H-------------
Q 012296          313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL--V-------------  377 (466)
Q Consensus       313 ~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~el--i-------------  377 (466)
                      .|+++|.++|+++|+++|+|++++.+..++++.+|+|++++|++|+++||++++||+++.+...  .             
T Consensus       160 ~dl~~I~~la~~~~i~vVvD~a~a~~~~~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~  239 (425)
T PRK06084        160 IDIQALADAAHRHGVPLIVDNTVATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPD  239 (425)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCC
Confidence            9999999999999999999999999888889999999999999999999999999999864321  0             


Q ss_pred             -------------------HHHHHHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCC
Q 012296          378 -------------------TQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL  438 (466)
Q Consensus       378 -------------------~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl  438 (466)
                                         ......+..+|..++|++||+++++|+++..|++++++|+++++++|++||+|.+|+||++
T Consensus       240 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l  319 (425)
T PRK06084        240 PSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWVKYAGL  319 (425)
T ss_pred             cccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence                               0011224567899999999999999999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHhhcCC-cceEEEEEecc
Q 012296          439 KSHPEHHIATQQMTG-FGGVVSFEVLM  464 (466)
Q Consensus       439 ~s~p~~~~~~~~~~g-~Gg~vsfel~~  464 (466)
                      ++||+|+++++||.| +||||||+|++
T Consensus       320 ~~~p~~~~~~~~~~g~~gg~~s~~~~~  346 (425)
T PRK06084        320 PDHPEHELARRYMGGKPASILSFGIKG  346 (425)
T ss_pred             CCcccHHHHHHhCCCCcceEEEEEecC
Confidence            999999999999987 89999999975

>PRK05939 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-53  Score=444.84  Aligned_cols=295  Identities=36%  Similarity=0.626  Sum_probs=268.6

Q ss_pred             CCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc
Q 012296          168 IVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP  247 (466)
Q Consensus       168 ~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~  247 (466)
                      +.+++++||||+|+||.|++.+++.+.+.+...+|.|+|++||++++||+.|++++|++.+++++||++|+..++.++++
T Consensus         5 ~~~~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~Y~r~g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~   84 (397)
T PRK05939          5 IEHGAVHKPIHTSVTYGYEDARDLIDVFQGKKPGFTYARQGTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLR   84 (397)
T ss_pred             CCCCCccCCccCCCCeecCCHHHHHHhhcCCcCCCCcCCCCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcC
Confidence            45689999999999999999988887776655679999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCC
Q 012296          248 AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA  327 (466)
Q Consensus       248 ~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gi  327 (466)
                      +||+||++++.|+++..++. .+...|+++++++..|+++++++++++ |++|++++|+||+|.+.|+++|+++||++|+
T Consensus        85 ~Gd~Vv~~~~~y~~t~~~~~-~l~~~G~~v~~v~~~d~e~l~~~l~~~-tklV~vesp~NptG~v~dl~~I~~la~~~gi  162 (397)
T PRK05939         85 AGDHLVSSQFLFGNTNSLFG-TLRGLGVEVTMVDATDVQNVAAAIRPN-TRMVFVETIANPGTQVADLAGIGALCRERGL  162 (397)
T ss_pred             CCCEEEECCCccccHHHHHH-HHHhcCCEEEEECCCCHHHHHHhCCCC-CeEEEEECCCCCCCCHHhHHHHHHHHHHcCC
Confidence            99999999999998876664 367789999999998999999999875 9999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHH--------H-------------HHHHH-HHHH
Q 012296          328 IVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK--------L-------------VTQIR-NLHH  385 (466)
Q Consensus       328 llIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~e--------l-------------i~~l~-~~~~  385 (466)
                      ++|+|++++.+..+++..+|+|++++|+||+++|||+++||+++.+..        +             +.+++ ....
T Consensus       163 ~livD~t~a~~~~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (397)
T PRK05939        163 LYVVDNTMTSPWLFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLR  242 (397)
T ss_pred             EEEEECCcccccccCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHH
Confidence            999999999888788888999999999999999999999998875321        1             11222 2345


Q ss_pred             HhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          386 VLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       386 ~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      .+|..++|+++|+++|+++||..|++++++|+.++++||++||+|++|+||+|++||+|+++++|++|+|+||||++++
T Consensus       243 ~~G~~~~p~~a~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~  321 (397)
T PRK05939        243 DMGATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELAD  321 (397)
T ss_pred             hcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999999975

>PRK07503 methionine gamma-lyase; Provisional

Probab=100.00  E-value=1.8e-53  Score=444.33  Aligned_cols=309  Identities=37%  Similarity=0.590  Sum_probs=286.0

Q ss_pred             cccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012296          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (466)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~s  232 (466)
                      ++|+++|.|..+.  ..+++++||||+|+||.|++.+++.+.+.++..+|.|+|+++|+.+.||+.|++++|++.+++++
T Consensus        10 ~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~~   87 (403)
T PRK07503         10 FSTRAIHHGYDPL--DHGGALVPPVYLTATFAFPTAEYGAECFAGEEEGHFYSRISNPTLALLEQRMASLEGGEAAVALA   87 (403)
T ss_pred             ccchheeCCCCCC--CCCCCccCCcccCcceecCChHHHHHhhccccCCceeeCCCCchHHHHHHHHHHHhCCCcEEEEc
Confidence            6799999996542  33689999999999999999998888886666679999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccc
Q 012296          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  312 (466)
Q Consensus       233 SGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v  312 (466)
                      ||++|+.+++.+++++||+||++.+.|+.++..+...+...|+++++++..|+++++++++++ +++|++++|+||+|.+
T Consensus        88 sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~-tklV~le~p~NPtG~~  166 (403)
T PRK07503         88 SGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDK-TRMVYFETPANPNMRL  166 (403)
T ss_pred             CHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCcc-CcEEEEeCCCCCCCee
Confidence            999999999999999999999999999888877766677889999999998999999999874 9999999999999999


Q ss_pred             ccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHH--HHHHhCCC
Q 012296          313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHHVLGGA  390 (466)
Q Consensus       313 ~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~--~~~~~G~~  390 (466)
                      .|+++|.++|+++|+++|+|++|+.++...++.+|+|++++|+||+++++|++++|+++++++++++++.  .+...|..
T Consensus       167 ~di~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~  246 (403)
T PRK07503        167 VDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAV  246 (403)
T ss_pred             eCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCC
Confidence            9999999999999999999999998877788888999999999999999999999999999999888874  35567888


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++++.+|+++++|+++..|++++.+|++.++++|++||.|++|+||++++||+|+++++||+|+|+|++|++++
T Consensus       247 ~s~~~a~l~l~~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~  320 (403)
T PRK07503        247 MSPFDAFLLMRGLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKG  320 (403)
T ss_pred             CCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999974

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=2.8e-53  Score=446.03  Aligned_cols=310  Identities=34%  Similarity=0.586  Sum_probs=279.6

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|.|...+  ..+++++||||+|+||.|++.+++.+.+.+...+|.|+|+++|++++||+.+|+++|++.++++
T Consensus         8 ~~~t~~~~~~~~~~--~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~y~R~~~p~~~~le~~lA~l~g~~~av~~   85 (433)
T PRK08134          8 GFDTLALHAGAAPD--PATGARAVPIHLTTSFVFRDSDHAAALFNLERAGHVYSRISNPTVAVLEERVAALEGGVGAIAT   85 (433)
T ss_pred             CcchhheeCCCCCC--CCCCCccCCccCCCccccCCHHHHHHhhcccccCceeecCcChHHHHHHHHHHHHhCCCcEEEe
Confidence            46799999996542  3468999999999999999998887776655668999999999999999999999999899999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +|||+|+.+++.+++++||+||++...|+++...+...+++.|++++++|..|+++++++|+++ |++|++++|+||+|.
T Consensus        86 sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i~~~-TklV~~e~~~np~g~  164 (433)
T PRK08134         86 ASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRPN-TRLLFGETLGNPGLE  164 (433)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhcCCC-CeEEEEECCCcccCc
Confidence            9999999999999999999999999999998887766677889999999988999999999985 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHH----------------
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK----------------  375 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~e----------------  375 (466)
                      +.|+++|+++||++|+++|+|++++.+..+.++.+|+|++++|.|||++|+|+++||+++....                
T Consensus       165 v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~  244 (433)
T PRK08134        165 VLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPY  244 (433)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCc
Confidence            9999999999999999999999999998888999999999999999999999999998874211                


Q ss_pred             ----------------HHHHH-HHHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCC
Q 012296          376 ----------------LVTQI-RNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL  438 (466)
Q Consensus       376 ----------------li~~l-~~~~~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl  438 (466)
                                      +..+. ......+|..+++++||+++++|+++..|++++++|+.+++++|++||+|.+|+||++
T Consensus       245 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l  324 (433)
T PRK08134        245 AGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVVAFLASHPAVARVAHPEL  324 (433)
T ss_pred             ccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence                            00111 1233567889999999999999999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHhhc-CCcceEEEEEecc
Q 012296          439 KSHPEHHIATQQM-TGFGGVVSFEVLM  464 (466)
Q Consensus       439 ~s~p~~~~~~~~~-~g~Gg~vsfel~~  464 (466)
                      ++||+|+++++|| +|+||||||+|++
T Consensus       325 ~~~p~~~~~~~~~~~g~gg~~s~~l~~  351 (433)
T PRK08134        325 ESHPDHALAKRLLPRGAGSVFSFDLKG  351 (433)
T ss_pred             CCCccHHHHHHhCCCCCceEEEEEecC
Confidence            9999999999999 7999999999975

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=100.00  E-value=3e-53  Score=439.69  Aligned_cols=302  Identities=33%  Similarity=0.586  Sum_probs=276.5

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      .++|+++|.|...+  ..+++++|||+++++|.|++..        +..+|.|+||+||+.++|++.||+++|.+.++++
T Consensus         3 ~~~t~~~~~~~~~~--~~~~~~~~pi~~ss~~~~~~~~--------~~~~~~Y~R~~~p~~~~le~~lA~l~g~~~v~~~   72 (382)
T TIGR02080         3 KQATIAVRSGLNSD--TQYGCVVPPIYLSTTYNFTGFN--------EPRAYDYSRSGNPTRDLLQQALAELEGGAGAVVT   72 (382)
T ss_pred             CcccceeecCCCCC--CCCCCccCCeeCCceeEeCCcC--------ccCCCcccCCCCchHHHHHHHHHHHhCCCcEEEE
Confidence            47899999996642  2368999999999999987532        1236889999999999999999999999899999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      ++|++|+.+++.+++++||+|+++.+.|++++..+.......++++.+++..|+++++++++++ +++|++++|+||||.
T Consensus        73 ~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~-tklV~l~~p~NPtG~  151 (382)
T TIGR02080        73 NTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQK-PKLVLIETPSNPLLR  151 (382)
T ss_pred             cCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcC-ceEEEEECCCCCCCE
Confidence            9999999999999999999999999999998877766666667899888888999999999875 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA  390 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~  390 (466)
                      +.|+++|.++|+++|+++|+|++|+.+..+.++.+|+|++++|+|||++|++++++|++++ +++++++++.++..+|..
T Consensus       152 ~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~  231 (382)
T TIGR02080       152 VVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVT  231 (382)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999887778888899999999999999999999999876 578889998888888999


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++|+.+|+++++++++..|++++++|+..+++||++||.|++|+||+|++||+|+++++||.|+||||||+|++
T Consensus       232 ~sp~~a~l~lr~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~  305 (382)
T TIGR02080       232 GGAFDSYLTLRGLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKG  305 (382)
T ss_pred             CCHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999975

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=100.00  E-value=4e-53  Score=439.93  Aligned_cols=308  Identities=37%  Similarity=0.640  Sum_probs=285.8

Q ss_pred             cccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012296          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (466)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~s  232 (466)
                      ++|+++|.|..+  + .++++.+|||++++|.+++.++....+.+...+|.|+|+.+|+.++||+.+++++|++++++++
T Consensus         7 ~~t~~~~~~~~~--~-~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~v~~s   83 (390)
T PRK08133          7 FDTLAVRAGQLR--S-PFGEHSEALFLTSSFVFESAAEAAARFAGEEPGNIYSRFTNPTVTMFQERLAALEGAEACVATA   83 (390)
T ss_pred             cchhheeCCCCC--C-CCCCccCCccCCCCcccCCHHHHHHhhcCCcCCceeECCCChHHHHHHHHHHHHhCCCcEEEEC
Confidence            679999999653  2 3678999999999999999877766665555578899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccc
Q 012296          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  312 (466)
Q Consensus       233 SGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v  312 (466)
                      ||++|+..++.+++++||+||++++.|++++..+...+...|+++++++..|+++++++++++ |++|++++|+||+|.+
T Consensus        84 sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~-tklV~ie~p~NptG~v  162 (390)
T PRK08133         84 SGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRPN-TKLFFLETPSNPLTEL  162 (390)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcC-CeEEEEECCCCCCCCc
Confidence            999999999999999999999999999999887777777889999999998999999999875 9999999999999999


Q ss_pred             ccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCch
Q 012296          313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN  392 (466)
Q Consensus       313 ~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~ls  392 (466)
                      .|+++|.++|+++|+++|+|++++.+....++.+|+|++++|+||+++|+|+++||++++++++++++.......|..++
T Consensus       163 ~dl~~I~~la~~~gi~livD~t~~~~~~~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~~  242 (390)
T PRK08133        163 ADIAALAEIAHAAGALLVVDNCFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLS  242 (390)
T ss_pred             CCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999988888888889999999999999999999999999999988888887888899999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       393 p~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++.+|+++++++++..|++++++|++.++++|+++|+|.+|+||+|++||+|+++++||+|+||||||+|++
T Consensus       243 ~~~a~~~l~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~  314 (390)
T PRK08133        243 PFNAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKG  314 (390)
T ss_pred             HHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999974

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=100.00  E-value=5.1e-53  Score=440.21  Aligned_cols=309  Identities=36%  Similarity=0.581  Sum_probs=282.7

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|.|..+   ..++++.+|||++++|.|++.++..+.+.+...+|.|+||++|+.+.||++||+++|++.++++
T Consensus        10 ~~~t~~~~~~~~~---~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~l~G~~~~~~~   86 (398)
T PRK07504         10 RPATRLVHSGTLR---SQFGETSEALFLTQGFVYDTAEAAEARFKGEDPGFIYSRYSNPTVDMFEKRMCALEGAEDARAT   86 (398)
T ss_pred             CcccceeeCCCCC---CCCCCCcCCeECCCCccCCCHHHHHHHhccCcCCceeecCCCchHHHHHHHHHHHhCCCeeeEe
Confidence            3679999999642   2367899999999999999988776666555567999999999999999999999999989999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      ++|++|+..++.+++++||+|+++++.|+++...+...++..|+++++++..|+++++++++++ |++|++|+|+||+|.
T Consensus        87 ~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~~-tklV~lesp~NptG~  165 (398)
T PRK07504         87 ASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPN-TKVFFLESPTNPTLE  165 (398)
T ss_pred             cCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcC-ceEEEEECCCCCCcE
Confidence            9999999988888899999999999999998777766677889999999988999999999875 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHH-HHHHHHHHhCCC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVLGGA  390 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~-~l~~~~~~~G~~  390 (466)
                      +.|+++|.++|+++|+++|+|++|+.+....+..+|+|++++|+||+++|+|+.+||+++++++++. +++......|..
T Consensus       166 v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~  245 (398)
T PRK07504        166 VIDIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPS  245 (398)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCccccccCCchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999888788888899999999999999999999999999888775 466666778999


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++++.+|+++++|+++..|++++++|+++++++|+++|+|.+|+||+|++||+|++++|||+|+||||||+|++
T Consensus       246 ~s~~~A~~~l~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~  319 (398)
T PRK07504        246 LSPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKG  319 (398)
T ss_pred             CCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999974

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=100.00  E-value=6.1e-53  Score=437.15  Aligned_cols=307  Identities=38%  Similarity=0.648  Sum_probs=284.3

Q ss_pred             ccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCC
Q 012296          154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMAS  233 (466)
Q Consensus       154 ~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sS  233 (466)
                      .|+++|.|..+  . .++++.+|||++++|.|++.++..+.+.+...+|.|+||++|+..+||+.|++++|++.+++++|
T Consensus         1 ~t~~~~~~~~~--~-~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~~~~~s   77 (380)
T TIGR01325         1 ATLAIRGGKER--T-EFREHAEALFLTSSFVYDSAAHAADRFAGEIPGFVYSRYANPTVAAFEERIAALEGAERAVATAT   77 (380)
T ss_pred             CceeEECCCCC--C-CCCCccCCeeCCcceecCCHHHHHHhhccccCCcceecCCCchHHHHHHHHHHHhCCCcEEEECC
Confidence            47789999643  2 36789999999999999998777666655556799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccc
Q 012296          234 GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV  313 (466)
Q Consensus       234 Gs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~  313 (466)
                      |++|+.+++.+++++||+|+++.+.|++++..+...+...|+++.+++..|+++++++++++ +++|++|+|+||+|.+.
T Consensus        78 G~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~-tklV~le~p~np~g~~~  156 (380)
T TIGR01325        78 GMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPN-TKLVFVETPSNPLGELV  156 (380)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCC-ceEEEEECCCCCCCeee
Confidence            99999999999999999999999999998877777778889999999988999999999875 99999999999999999


Q ss_pred             cHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchH
Q 012296          314 DVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP  393 (466)
Q Consensus       314 dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp  393 (466)
                      |+++|.++|+++|+++|+|++|+.+..+.++.+|+|++++|++|+++|+++++||+++++++++++++......|..++|
T Consensus       157 dl~~I~~la~~~gi~livD~a~~~~~~~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p  236 (380)
T TIGR01325       157 DIAALAELAHAIGALLVVDNVFATPVLQQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSP  236 (380)
T ss_pred             CHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCH
Confidence            99999999999999999999999887788888999999999999999999989999999999999988887788999999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       394 ~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      +.+|+++++++++..|++++.+|+++++++|++||+|++|+||++++||+|++++|||+|+||||||+|++
T Consensus       237 ~~a~~~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~~  307 (380)
T TIGR01325       237 FNAWVLLKGLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVAD  307 (380)
T ss_pred             HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999984

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK07049 methionine gamma-lyase; Validated

Probab=100.00  E-value=5.7e-53  Score=443.37  Aligned_cols=310  Identities=31%  Similarity=0.527  Sum_probs=279.3

Q ss_pred             cccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhc----------ccCCccccCCCchhHHHHHHHHHhh
Q 012296          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEK----------RRASFEYGRYGNPTTVVVEEKMSAL  222 (466)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~----------~~~~~~Y~R~~np~~~~Lee~LA~l  222 (466)
                      ++|+++|.|..+  ...++++.||||+|+||.|++.+++.+.+..          ...+|.|+||+||+...||+.||++
T Consensus        18 ~~t~~~~~~~~~--~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~R~~~Pt~~~Le~~lA~l   95 (427)
T PRK07049         18 PETQMLNYGYDP--ELSEGAVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLVYSRFNHPNSEIVEDRLAVY   95 (427)
T ss_pred             cccceeeCCCCC--CCCCCCccCCccCccceecCChHHHHhhhhccccccccccccccCccccCCCCcCHHHHHHHHHHH
Confidence            678999999643  2236899999999999999999877765422          1346899999999999999999999


Q ss_pred             hCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCce-EEEeCCCCHHHHHHhhc----CCCc
Q 012296          223 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT-ATVIDPADMEGLEAALN----NNNV  297 (466)
Q Consensus       223 ~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~-v~~vd~~Dle~Le~ai~----~~~t  297 (466)
                      +|.++++++++|++|+.+++.+++++||+|+++++.|+++...+...++..|++ +.+.+..|+++++++++    +.++
T Consensus        96 eg~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~~d~~~l~~~l~~~~~~~~t  175 (427)
T PRK07049         96 EGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADGLSEAAIGAAAEAAAAKGRV  175 (427)
T ss_pred             hCCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCCCCHHHHHHHHHhhccCCCc
Confidence            999999999999999999999999999999999999999887776667788997 55556667888887764    2348


Q ss_pred             eEEEEeCCCCCCcccccHHHHHHHHHh------cCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEE
Q 012296          298 SLFFTESPTNPFLRCVDVKLVSDLCHK------KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS  371 (466)
Q Consensus       298 klV~lesP~NPtG~v~dl~~Ia~la~~------~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~iv  371 (466)
                      ++|++|+|+||||.+.|+++|.+++++      +++++|+||+|.+++.+.++.+|+|++++|+||+++|++++++|+++
T Consensus       176 klv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl~~g~divv~S~SK~~gG~~glr~G~vv  255 (427)
T PRK07049        176 SLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAGAVL  255 (427)
T ss_pred             eEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCccccCCCEEEEcCceeecCCCCcEEEEEE
Confidence            999999999999999999999999988      89999999999988878888889999999999999998889999999


Q ss_pred             eCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCC--CCCchHHHHHh
Q 012296          372 GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL--KSHPEHHIATQ  449 (466)
Q Consensus       372 g~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl--~s~p~~~~~~~  449 (466)
                      ++++++++++..+..+|..++++.+|+++++++++..|++++++|++.++++|++||+|.+|+||++  ++||+|+++++
T Consensus       256 ~~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~  335 (427)
T PRK07049        256 GRKALIRQVRALRSAIGTQLDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKR  335 (427)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHh
Confidence            9999999999988889999999999999999999999999999999999999999999999999986  99999999999


Q ss_pred             hcCCcceEEEEEecc
Q 012296          450 QMTGFGGVVSFEVLM  464 (466)
Q Consensus       450 ~~~g~Gg~vsfel~~  464 (466)
                      ||.|+||||||+|++
T Consensus       336 ~~~g~g~~~s~~~~~  350 (427)
T PRK07049        336 QCTGAGSTFSFDIKG  350 (427)
T ss_pred             hCCCCccEEEEEEcC
Confidence            999999999999975

>PRK07050 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=7.1e-53  Score=438.59  Aligned_cols=310  Identities=24%  Similarity=0.427  Sum_probs=286.5

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|.|...+  ..+++++||||+|+||.|++.+++...+.++..+|.|+|++||+.++||+.+++++|.+.++++
T Consensus         9 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~Le~~lA~l~g~~~~l~~   86 (394)
T PRK07050          9 ALQTRIVQPDDQIP--PGFRSFVTPVARASTVVFPDLATMRALDWRQDVQWRYGLHATPTSLALAQRLAEIEGGRHALLQ   86 (394)
T ss_pred             CccchheECCCCCC--CCCCCccCCeeCCcceecCCHHHHHhhcccccCCcccCCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence            57899999996542  2368999999999999999998777666545567999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +||++|+.+++.+++++||+||++++.|+++..++...+...|+++.+++..+.++++++++++ |++|++|+|+||+|.
T Consensus        87 ~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~-tklV~le~p~Np~~~  165 (394)
T PRK07050         87 PSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQPN-TRLIWLEAPGSVTME  165 (394)
T ss_pred             ccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCCC-CeEEEEECCCCCCcc
Confidence            9999999999999999999999999999998877766677889999999877788999999875 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA  390 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~  390 (466)
                      +.|+++|+++|+++|+++|+|++|+.+..++++.+|+|++++|++|+++|++++++|++++ +++++++++..+...|.+
T Consensus       166 ~~di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~  245 (394)
T PRK07050        166 VPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIG  245 (394)
T ss_pred             HhhHHHHHHHHHHcCCEEEEECCcccccccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999998899999999999999999999999988887766 678889999888888999


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++++++|+++++++++..|++++++|+++++++|++||+|.+|+||+|++||+|+++++|+.|+|+|++|++++
T Consensus       246 ~~~~~a~l~lr~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~  319 (394)
T PRK07050        246 VSADDCSLVLRGLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDE  319 (394)
T ss_pred             CCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999985

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=100.00  E-value=9.3e-53  Score=435.77  Aligned_cols=300  Identities=37%  Similarity=0.669  Sum_probs=275.9

Q ss_pred             cccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012296          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (466)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~s  232 (466)
                      ++|+++|.|...+  ..++++.||||+|+||.|++..        +..+|.|+|++||+...||+++++++|++.+++++
T Consensus         3 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~p~~~~Le~~la~l~g~~~al~~~   72 (380)
T PRK06176          3 MQTKLIHGGISED--TTTGAVSVPIYQTSTYRQDAIG--------RPKGYEYSRSGNPTRFALEELIADLEGGVKGFAFA   72 (380)
T ss_pred             ccceeeECCCCCC--CCCCCccCCcccCCceecCCCC--------CcCCCcccCCCChhHHHHHHHHHHHhCCCCEEEEC
Confidence            5688999996542  3368999999999999998732        23479999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccc
Q 012296          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  312 (466)
Q Consensus       233 SGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v  312 (466)
                      |||.|+.+++ .++++||+|+++++.|++++..+...+...|++++++|..|+++++++++++ +++|++|+|+||+|.+
T Consensus        73 SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e~l~~ai~~~-t~lV~lesP~Nptg~~  150 (380)
T PRK06176         73 SGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPN-TKALYLETPSNPLLKI  150 (380)
T ss_pred             CHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCCCHHHHHHhcCcC-ceEEEEECCCCCCcee
Confidence            9999998766 5789999999999999998888877788889999999999999999999875 9999999999999999


Q ss_pred             ccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhCCCc
Q 012296          313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGAL  391 (466)
Q Consensus       313 ~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G~~l  391 (466)
                      .|+++|+++||++|+++|+|++++.++...++.+|+|++++|++|+++||+++++|+++++ +++.++++..+...|..+
T Consensus       151 ~di~~I~~la~~~gi~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~  230 (380)
T PRK06176        151 TDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVL  230 (380)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCccccccCCccccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999998887888899999999999999999999999998875 577788888888889889


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       392 sp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      +|..+|+++++++++..|++++++|+++++++|+++|+|.+|+||+|++||+|+++++||+|+|+|+||++++
T Consensus       231 ~~~~~~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~  303 (380)
T PRK06176        231 GPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKN  303 (380)
T ss_pred             CHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999975

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.6e-52  Score=434.73  Aligned_cols=303  Identities=35%  Similarity=0.566  Sum_probs=272.6

Q ss_pred             cccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012296          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (466)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~s  232 (466)
                      .+|+++|.|...   ..+++++||||+|+||.+++.+.    +.++..+|.|+|++||++++||+.+|+++|.+++++++
T Consensus         3 ~~t~~~~~~~~~---~~~~~~~~pi~~~st~~~~~~~~----~~~~~~~~~y~r~~np~~~~lE~~lA~l~g~~~~l~~~   75 (385)
T PRK08574          3 RGTDAVRGYRGS---DPYGSLQPPIYLTALFRQEGEAY----PSDRGFDLKYSREENPTLRPLEEALAKLEGGVDALAFN   75 (385)
T ss_pred             ccceeeecCCCC---CCCCCccCCccCCcceecCcchh----hcCCcCCceEECCCCccHHHHHHHHHHHhCCCcEEEeC
Confidence            568899987443   23689999999999999887532    22333579999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccc
Q 012296          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  312 (466)
Q Consensus       233 SGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v  312 (466)
                      ||++|+..++.+++++||+|+++.+.|+++...+.. +...|+++.+++. |++++++++++.++++|++++|+||+|.+
T Consensus        76 sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~-~~~~g~~v~~~~~-d~~~l~~~i~~~~tklV~ie~p~NPtG~v  153 (385)
T PRK08574         76 SGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKS-LEKFGVKVVLAYP-STEDIIEAIKEGRTKLVFIETMTNPTLKV  153 (385)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHH-hhccCcEEEEECC-CHHHHHHhcCccCceEEEEECCCCCCCEe
Confidence            999999999999999999999999999998877754 3677999888764 68999999987349999999999999999


Q ss_pred             ccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEE-eCHHHHHHHHHHHHHhCCCc
Q 012296          313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGAL  391 (466)
Q Consensus       313 ~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~iv-g~~eli~~l~~~~~~~G~~l  391 (466)
                      .|+++|+++|+++|+++|+|++++.++..+++.+|+|++++|++|+++||++++||+++ .++++.++++.++..+|..+
T Consensus       154 ~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~  233 (385)
T PRK08574        154 IDVPEVAKAAKELGAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIM  233 (385)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCCccccCChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999988888888899999999999999999998899554 57888888888888889999


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcC--CcceEEEEEecc
Q 012296          392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT--GFGGVVSFEVLM  464 (466)
Q Consensus       392 sp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~--g~Gg~vsfel~~  464 (466)
                      +|+.+|+++++++++..|++++++|+++++++|+++|.|++|+||+|++||+|+++++||+  |+||||||++++
T Consensus       234 ~p~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~  308 (385)
T PRK08574        234 QPFEAYLVLRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKG  308 (385)
T ss_pred             CHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCC
Confidence            9999999999999999999999999999999999999999999999999999999999996  799999999974

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=3.4e-52  Score=434.76  Aligned_cols=302  Identities=36%  Similarity=0.593  Sum_probs=276.6

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|.|...+  ..+++++||||++++|.|++..        ...+|.|+|+++|+.+.|+++||+++|++.++++
T Consensus        12 ~~~t~~~~~~~~~~--~~~~~~~~pi~~ss~~~~~~~~--------~~~~~~y~R~~~p~~~~Le~~lA~l~g~~~~v~~   81 (405)
T PRK08776         12 SAATAAVRAGIDRD--TAYGAVTPPIVLSSNFSFDGFG--------NKRQYDYTRSGNPTRDLLGEALAELEGGAGGVIT   81 (405)
T ss_pred             CccchheeCCCCCC--CCCCCccCCEeccceEEeCCCC--------cccCCcccCCCChHHHHHHHHHHHHhCCCceEEE
Confidence            47899999996542  3468999999999999988732        1236899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +||++|+.+++.+++++||+|+++.+.|+++...+...++..|+++..++..|+++|+++++++ +++|++|+|+||+|.
T Consensus        82 ~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~-tklV~l~~P~NPtG~  160 (405)
T PRK08776         82 ATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQS-PKLVLIETPSNPLLR  160 (405)
T ss_pred             cCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcC-CeEEEEECCCCCCCc
Confidence            9999999999999999999999999999998877766677789999999988999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA  390 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~  390 (466)
                      +.|+++|+++|+++|+++|+|++|+.+..+.++.+|+|++++|++|+++|++++++|++++ ++++.++++..+...|..
T Consensus       161 v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~  240 (405)
T PRK08776        161 ITDLRFVIEAAHKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLT  240 (405)
T ss_pred             cCCHHHHHHHHHHcCCEEEEECCCcccccCCcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999887778888999999999999999999888998876 577888888877778888


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++++.+|++++++++++.|++++.+|++.++++|+++|.|.+|+||++++||+|+++++||+|+||||||++++
T Consensus       241 ~s~~~a~l~~~gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~  314 (405)
T PRK08776        241 GSPFDAFLTLRGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEG  314 (405)
T ss_pred             CCHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999975

>PRK07671 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=5.5e-52  Score=429.62  Aligned_cols=300  Identities=38%  Similarity=0.684  Sum_probs=274.6

Q ss_pred             cccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012296          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (466)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~s  232 (466)
                      ++|+++|.|...+  ..+++++||||+++||.+++..        ...+|.|+|+++|+...||+.||+++|.+.+++++
T Consensus         3 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~p~~~~Le~~lA~l~g~~~~~~~~   72 (377)
T PRK07671          3 AKTKLIHGGIIGD--PSTGAVSVPIYQVSTYKQEAVG--------KHQGYEYSRTGNPTRAALEELIAVLEGGHAGFAFG   72 (377)
T ss_pred             cccceeeCCCCCC--CCCCCccCCccCCcceecCCCC--------CcCCCCcCCCCChHHHHHHHHHHHHhCCCceEEeC
Confidence            5799999996542  3368999999999999988742        23468999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccc
Q 012296          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  312 (466)
Q Consensus       233 SGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v  312 (466)
                      ||++++..++ .++++||+|+++++.|++++..+...+...|+++++++..|+++++++++++ |++|++|+|+||+|.+
T Consensus        73 sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~-tklV~le~P~NPtg~~  150 (377)
T PRK07671         73 SGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPN-TKAIYVETPTNPLLKI  150 (377)
T ss_pred             CHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCCC-CeEEEEECCCCCCCcc
Confidence            9999887765 6789999999999999988877766777889999999988999999999875 9999999999999999


Q ss_pred             ccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCCc
Q 012296          313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGAL  391 (466)
Q Consensus       313 ~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~l  391 (466)
                      .|+++|.++|+++|+++|+|++|+.++...+..+|+|++++|++|+++||+++++|+++. +++++++++..+...|+.+
T Consensus       151 ~dl~~I~~la~~~g~~lvvD~a~~~~~~~~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~  230 (377)
T PRK07671        151 TDIKKISTIAKEKGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGIL  230 (377)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCCccccCChhhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999998887778888899999999999999999888998776 5678899999888889999


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       392 sp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      +++.+|+++++++++..|++++++|++.|+++|+++|+|.+|+||++++||+|+++++||.|+||||||++++
T Consensus       231 ~~~~a~l~~~~l~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~  303 (377)
T PRK07671        231 GPQDSWLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVGS  303 (377)
T ss_pred             CHHHHHHHHcCcChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999954

>PRK06234 methionine gamma-lyase; Provisional

Probab=100.00  E-value=7.7e-52  Score=431.66  Aligned_cols=309  Identities=36%  Similarity=0.622  Sum_probs=283.8

Q ss_pred             cccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012296          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (466)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~s  232 (466)
                      ++|+++|.|...+  ..++++++|||.+++|.+++.+++.+.+..+..+|.|+||++|+..+||+.||+++|.+++++++
T Consensus         9 ~~t~~~~~~~~~~--~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~Le~~iA~~~g~~~~l~~~   86 (400)
T PRK06234          9 FATKAIHGGHIGD--KQFGSLATPIYQTSTFIFDSAEQGGRRFAGEESGYIYSRLGNPTSTEVENKLALLEGGEAAVVAA   86 (400)
T ss_pred             ccchheECCCCCC--CCCCCccCCcccccceecCChHHHHHhhccCcCCCcccCCCCccHHHHHHHHHHHhCCCcEEEEc
Confidence            5799999996542  23689999999999999999887766665544578899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccc
Q 012296          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  312 (466)
Q Consensus       233 SGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v  312 (466)
                      ||++|+..++.+++++||+|+++.+.|+.+...+...++..|+++++++..|+++++++++++ +++|++|+|+||+|.+
T Consensus        87 sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~-tklI~iesP~NPtG~v  165 (400)
T PRK06234         87 SGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKAN-TKVVYLETPANPTLKV  165 (400)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccC-CeEEEEECCCCCCCCc
Confidence            999999999999999999999999999998877766678889999999999999999999875 9999999999999999


Q ss_pred             ccHHHHHHHHHhc--CCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHH--HHHhC
Q 012296          313 VDVKLVSDLCHKK--GAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL--HHVLG  388 (466)
Q Consensus       313 ~dl~~Ia~la~~~--gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~--~~~~G  388 (466)
                      .|+++|.++|+++  |+++|+|++|+.+....++.+|+|++++|++|+++|+|++++|+++++++++++++..  +..+|
T Consensus       166 ~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g  245 (400)
T PRK06234        166 TDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTG  245 (400)
T ss_pred             CCHHHHHHHHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcC
Confidence            9999999999997  9999999999988777888889999999999999999998899999999998888753  44678


Q ss_pred             CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       389 ~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ..++|+.+|+++++++++..|++++.+|+++++++|++||.|.+|+||+|++||+|+++++|++|+|+|++|++++
T Consensus       246 ~~l~p~~a~l~~~~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~  321 (400)
T PRK06234        246 SVIGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKG  321 (400)
T ss_pred             CCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999974

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1e-51  Score=429.17  Aligned_cols=302  Identities=39%  Similarity=0.653  Sum_probs=276.4

Q ss_pred             cccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012296          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (466)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~s  232 (466)
                      ++|+++|.|...+  ..+++++||||+|+||.+++.+.       ...+|.|+|+++|+..+||++||+++|.+.+++++
T Consensus        13 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~~-------~~~~~~Y~r~~~p~~~~Le~~lA~~~g~~~~i~~~   83 (388)
T PRK07811         13 FATRAIHAGYEPD--PATGAVNPPIYASSTFAQDGVGG-------LRGGYEYARTGNPTRTALEEQLAALEGGAYGRAFS   83 (388)
T ss_pred             cccceeeCCCCCC--CCCCCccCCccCCcceecCCccc-------ccCCCcccCCCCccHHHHHHHHHHHhCCCceEEeC
Confidence            6799999996542  33689999999999999887532       12368999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccc
Q 012296          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  312 (466)
Q Consensus       233 SGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v  312 (466)
                      ||++|+.+++.+++++||+|+++++.|++++..+...+...|+++.+++..|+++++++++++ +++|++|+|+||+|.+
T Consensus        84 sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~-tklV~ie~p~NPtg~~  162 (388)
T PRK07811         84 SGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPR-TKLIWVETPTNPLLSI  162 (388)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcC-CeEEEEECCCCCccee
Confidence            999999999999999999999999999998877766677789999999988999999999875 9999999999999999


Q ss_pred             ccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhCCCc
Q 012296          313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGAL  391 (466)
Q Consensus       313 ~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G~~l  391 (466)
                      .|+++|+++|+++|+++|+|++|+.+....++.+|+|++++|++|+++|++++++|+++++ +++.++++..+...|..+
T Consensus       163 ~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~  242 (388)
T PRK07811        163 TDIAALAELAHDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVP  242 (388)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999998877788888999999999999999998889988775 677788887777778889


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       392 sp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      +++.+|+++++|+++..|++++++|++.++++|++||+|.+|+||++++||+|+++++||+|+||||||+|++
T Consensus       243 s~~~a~l~~~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~  315 (388)
T PRK07811        243 GPFDAYLTLRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAG  315 (388)
T ss_pred             CHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999974

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.1e-51  Score=433.70  Aligned_cols=310  Identities=31%  Similarity=0.487  Sum_probs=278.1

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|.|...+  ..++++.+|||+++||.|++.+++.+++..+..++.|+|.++|+...||+.|++++|.+.++++
T Consensus         7 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~al~~   84 (427)
T PRK05994          7 GFATLAVHAGAQPD--PTTGARATPIYQTTSFVFNDADHAASLFGLQAFGNIYTRITNPTNAVLEERVAALEGGTAALAV   84 (427)
T ss_pred             CcchhheECCcCCC--CCCCCccCCCcCCCCcccCCHHHHHHhhccccCCcceECCCCccHHHHHHHHHHHhCCCcEEEE
Confidence            36799999996532  2358999999999999999988777766555456889999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +||++|+.+++.+++++||+||++.+.|+++...+...+...|++++++|..|+++++++++++ +++|++++|+||+|.
T Consensus        85 ~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~-tklV~vesp~NptG~  163 (427)
T PRK05994         85 ASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPR-TKAIFIESIANPGGT  163 (427)
T ss_pred             cCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcC-CeEEEEECCCCCCCe
Confidence            9999999999999999999999999999998877766677889999999998999999999875 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCH-----------------
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-----------------  374 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~-----------------  374 (466)
                      +.|+++|.++|+++|+++|+|++++.++.++++.+|+|++++|++|+++||++.+||+++...                 
T Consensus       164 v~dl~~I~~la~~~gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~  243 (427)
T PRK05994        164 VTDIAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPR  243 (427)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCccccccCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCc
Confidence            999999999999999999999999998888999999999999999999999999999988522                 


Q ss_pred             -H-----HHHH----------HHHHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCC
Q 012296          375 -K-----LVTQ----------IRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL  438 (466)
Q Consensus       375 -e-----li~~----------l~~~~~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl  438 (466)
                       +     +.+.          ........|..++|++||+++++|++|..|++++++|++.++++|++||+|.+|+||++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l  323 (427)
T PRK05994        244 PEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGL  323 (427)
T ss_pred             chhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence             1     1111          11234567899999999999999999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHhhc-CCcceEEEEEecc
Q 012296          439 KSHPEHHIATQQM-TGFGGVVSFEVLM  464 (466)
Q Consensus       439 ~s~p~~~~~~~~~-~g~Gg~vsfel~~  464 (466)
                      ++||+|+++++|+ +|+||||||+|++
T Consensus       324 ~~~~~~~~~~~~~~~g~g~~~sf~l~~  350 (427)
T PRK05994        324 PDDPYHALAQKYSPKGAGAVFTFGLKG  350 (427)
T ss_pred             CCCccHHHHHHhcCCCceEEEEEEecC
Confidence            9999999999997 8999999999974

>PRK06460 hypothetical protein; Provisional

Probab=100.00  E-value=2.8e-51  Score=424.17  Aligned_cols=297  Identities=41%  Similarity=0.693  Sum_probs=272.3

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|.++|.|.+    ..++++.||||+|+||.|++.           .+|.|+|..+|+.++||+++|+++|.+.++++
T Consensus         2 ~~~t~~~~~~~~----~~~~~~~~pi~~~~~~~~~~~-----------~~~~y~r~~~p~~~~L~~~lA~l~g~~~~v~~   66 (376)
T PRK06460          2 KDATRTVREDID----EATGAITTPIYQTTAYHYPEG-----------EKYRYSREANPTVLELTKKIVELENAEMGVAF   66 (376)
T ss_pred             CcceeeeecCCC----CCCCCccCCccCCcceeeCCC-----------CCcceeCCCCccHHHHHHHHHHHhCCCcEEEe
Confidence            578999999952    236799999999999998763           26899999999999999999999999889999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      ++|++|+..++.+++++||+|+++.+.|++++..+...++..|+++..++..+.+.+++++++ ++++|++++|+||+|.
T Consensus        67 ~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~~~~l~~~~~~-~tklV~l~sp~NPtG~  145 (376)
T PRK06460         67 SSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNIIEKAKSK-RYDVVFVENITNPLLR  145 (376)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCCHHHHHHhcCC-CceEEEEECCCCCCCc
Confidence            999999999999999999999999999998888777777888999998887766666666655 4999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCc
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL  391 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~l  391 (466)
                      +.|+++|.++|+++|+++|+|++|+.+....++..++|++++|+||+++|+++.++|+++++++++++++..+..+|..+
T Consensus       146 v~d~~~I~~la~~~g~~vivDea~~~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g~~~  225 (376)
T PRK06460        146 VVDITELSKVCKENGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSL  225 (376)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCcCccccCChhhcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999988766667777899999999999999988889999999999999998888889889


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       392 sp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++..+|++++++++++.|++++++|+++++++|+++|+|.+|+||+|++||+|+++++||+|+||||||++++
T Consensus       226 ~~~~a~~~l~~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~  298 (376)
T PRK06460        226 DPHAAYLTLRGIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNG  298 (376)
T ss_pred             CHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999975

>PLN02509 cystathionine beta-lyase

Probab=100.00  E-value=2.1e-51  Score=433.90  Aligned_cols=300  Identities=33%  Similarity=0.607  Sum_probs=271.5

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|.|....   .+++++||||+|+||.+++..        ....|.|+|.+||++++||++++++++.+.++++
T Consensus        86 ~~~t~~~~~~~~~~---~~~~~~~Pi~~sst~~~~~~~--------~~~~~~Y~r~gnpt~~aLE~~lA~leg~e~ai~~  154 (464)
T PLN02509         86 SVSTLLVNLDNKFD---PFDAMSTPLYQTATFKQPSAI--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFCF  154 (464)
T ss_pred             CcchHheeCCCCCC---CCCCccCCccccceecCcccc--------ccCCCccCCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence            47899999996542   257999999999999887631        2246899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      ++|++|+.+++ .++++||+||++++.|+++..++...+...|+++.+++..|+++++++++++ +++|++|+|+||+|.
T Consensus       155 ~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~-TklV~lesPsNPtG~  232 (464)
T PLN02509        155 TSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQ-TKLVWLESPTNPRQQ  232 (464)
T ss_pred             CcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcC-CeEEEEECCCCCCCC
Confidence            99999986655 6789999999999999998877766677889999999988999999999875 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCH-HHHHHHHHHHHHhCCC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGA  390 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~-eli~~l~~~~~~~G~~  390 (466)
                      +.|+++|+++|+++|+++|+|++++.++...++.+|+|++++|++||++||+++++|++++++ ++.++++.++...|..
T Consensus       233 i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~  312 (464)
T PLN02509        233 ISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSG  312 (464)
T ss_pred             HHHHHHHHHHHHHcCCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999988888888899999999999999999998899998754 5566667677777888


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++|+.||+++++|+++..|++++++|+++++++|++||.|++|+||||++||+|+++++||+|+||||||++.+
T Consensus       313 l~p~~A~l~lr~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~~  386 (464)
T PLN02509        313 LAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS  386 (464)
T ss_pred             cCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999943

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=100.00  E-value=2.4e-51  Score=430.31  Aligned_cols=309  Identities=38%  Similarity=0.630  Sum_probs=276.1

Q ss_pred             cccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012296          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (466)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~s  232 (466)
                      ++|+++|+|...+  ..++++.||||+++||.|++.++..+.+.....+|.|+|+++|+.++||++||+++|.+.+++++
T Consensus         2 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~ysr~~~p~~~~le~~lA~l~g~~~~v~~~   79 (418)
T TIGR01326         2 FETLQLHAGQEPD--PTTGSRAVPIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTTDVLEQRIAALEGGVAALAVA   79 (418)
T ss_pred             ccceeEECCCCCC--CCCCCccCCccCCCCeecCCHHHHHHhhccCcCCceeECCCChhHHHHHHHHHHHhCCCeEEEEc
Confidence            5789999996542  23579999999999999999987666655444568999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccc
Q 012296          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  312 (466)
Q Consensus       233 SGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v  312 (466)
                      |||+|+..++.+++++||+||++++.|++++..+...++..|+++++++..|+++++++++++ +++|++++|+||+|.+
T Consensus        80 sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~-t~~V~le~p~NPtg~v  158 (418)
T TIGR01326        80 SGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDEN-TKAVFAETIGNPAINV  158 (418)
T ss_pred             cHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcC-CeEEEEECCCCCCCee
Confidence            999999999999999999999999999998887777778889999999988999999999875 9999999999999999


Q ss_pred             ccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHH----------------
Q 012296          313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL----------------  376 (466)
Q Consensus       313 ~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~el----------------  376 (466)
                      .|+++|.++|+++|+++|+|++|+.+....++..|+|++++|++|+++|+|+++||+++.++++                
T Consensus       159 ~dl~~I~~la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~  238 (418)
T TIGR01326       159 PDIEAIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPS  238 (418)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccccCCccceEEEEEecccccccccccccccCCCCc
Confidence            9999999999999999999999998877788888999999999999999999988888854321                


Q ss_pred             ---------------H-HHHHHHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCC
Q 012296          377 ---------------V-TQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKS  440 (466)
Q Consensus       377 ---------------i-~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s  440 (466)
                                     + +......+..|..++|+.+|+++++++++..|++++.+|+..++++|.++|+|..|+||++++
T Consensus       239 q~a~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~~~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~yP~l~~  318 (418)
T TIGR01326       239 YHGLVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLAS  318 (418)
T ss_pred             cccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHCCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCC
Confidence                           1 111124456788889999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHhhc-CCcceEEEEEecc
Q 012296          441 HPEHHIATQQM-TGFGGVVSFEVLM  464 (466)
Q Consensus       441 ~p~~~~~~~~~-~g~Gg~vsfel~~  464 (466)
                      ||+|+++++|| +|+||||||++++
T Consensus       319 ~~~~~~~~~~~~~g~g~~~s~~l~~  343 (418)
T TIGR01326       319 HPHHALAKKYLPKGFGAVLSFEIKG  343 (418)
T ss_pred             CccHHHHHHhccCCCcceEEEEecC
Confidence            99999999999 7999999999975

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK06767 methionine gamma-lyase; Provisional

Probab=100.00  E-value=3.3e-51  Score=425.02  Aligned_cols=304  Identities=34%  Similarity=0.560  Sum_probs=279.1

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|.|...+  ..+++++||||+|+||.|++.+++.+.+.+...+|.|+||++|+.++||+.+|+++|.++++++
T Consensus         5 ~~~t~~~~~~~~~~--~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~G~~~al~~   82 (386)
T PRK06767          5 HMETALIHHGYTSE--EHKGSLTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFEERMAVLEGGEEALAF   82 (386)
T ss_pred             CcccceeeCCCCCC--CCCCCccCCccCccceecCCHHHHHHhhccCcCCccccCCCCcchHHHHHHHHHHhCCCcEEEE
Confidence            47899999996542  2368999999999999999998888888776678999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +||++|+..++.+++++||+|+++++.|++++..+.......|+++.+++..|+++++++++++ +++|++|+|+||+|.
T Consensus        83 ~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~~-tklV~lesp~NptG~  161 (386)
T PRK06767         83 GSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRPN-TKLIFVETPINPTMK  161 (386)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCcC-ceEEEEeCCCCCCce
Confidence            9999999999999999999999999999998887776667789999988888999999999875 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHH-HHHHHHhCCC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI-RNLHHVLGGA  390 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l-~~~~~~~G~~  390 (466)
                      +.|+++|.++|+++|+++|+|++|+.+..+.++..|+|++++|++|+++|++++++|++++++++++++ +..+..+|+.
T Consensus       162 v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~  241 (386)
T PRK06767        162 LIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGI  241 (386)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999988878888889999999999999999998899999999888765 4566678888


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++++.+|+++++|+++..|++++++|++.++++|+++|+|+.|+||      +|+++++||+|+||||+|++++
T Consensus       242 ~~~~~a~l~~~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p------~~~~~~~~~~~~gg~vsf~l~~  309 (386)
T PRK06767        242 MAPFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYP------EGELASRQMKRGGGVISFSIKG  309 (386)
T ss_pred             CCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC------CcHHHHHhCCCCCceEEEEEcC
Confidence            8999999999999999999999999999999999999999999999      7899999999999999999974

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=100.00  E-value=4.5e-51  Score=421.47  Aligned_cols=293  Identities=48%  Similarity=0.828  Sum_probs=276.9

Q ss_pred             CcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCC
Q 012296          171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGG  250 (466)
Q Consensus       171 ~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd  250 (466)
                      ++++||||+|+||.|++.+++.+.+.++..+|.|+|+++|+.++||+.+++++|.+++++++||++|+..++.+++++||
T Consensus         1 ~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~~gd   80 (369)
T cd00614           1 GAVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGD   80 (369)
T ss_pred             CCcCCCccCCCceecCCHHHHHHhhcCCcCCceeECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcCCCC
Confidence            36899999999999999998888877766789999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEE
Q 012296          251 HIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC  330 (466)
Q Consensus       251 ~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillI  330 (466)
                      +|+++.+.|++++..+...++..|+++.+++..|+++++++++++ +++|++|+|+||+|.+.|+++|+++|+++|+++|
T Consensus        81 ~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~li  159 (369)
T cd00614          81 HVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKPE-TKLVYVESPTNPTLKVVDIEAIAELAHEHGALLV  159 (369)
T ss_pred             EEEECCCCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCCC-CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEE
Confidence            999999999998877776677889999999999999999999874 9999999999999999999999999999999999


Q ss_pred             EeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCH-HHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHHH
Q 012296          331 IDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR  409 (466)
Q Consensus       331 vDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~-eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~~R  409 (466)
                      +|++|+.++.+.++.+|+|++++|++|+++|++++++|++++++ +++++++..+..+|..++++.+|+++++++++..|
T Consensus       160 vD~t~~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~r  239 (369)
T cd00614         160 VDNTFATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLR  239 (369)
T ss_pred             EECCCcchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCHHHH
Confidence            99999998888888899999999999999999998999999987 89999998888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          410 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       410 ~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++++.+|+++++++|+++|+|.+|+||+|++||+|+++++|++|+|+|++|++++
T Consensus       240 ~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~  294 (369)
T cd00614         240 MERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKG  294 (369)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCC
Confidence            9999999999999999999999999999999999999999999999999999973

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK07582 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=1.6e-50  Score=417.23  Aligned_cols=298  Identities=35%  Similarity=0.564  Sum_probs=267.1

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      ++.|+++|.|...+  ..+++++||||+|+||.|++.        ++..+|.|+||++|+..+|+++||+++ .++++++
T Consensus         3 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~--------~~~~~~~y~ry~~p~~~~Le~~lA~l~-~~~~v~~   71 (366)
T PRK07582          3 GDGTRSVHAGGPEA--VPGEPVLPGPVFAAPYHLSPG--------EPTGPDTYGRASNPTWRALEAALGELE-GAEALVF   71 (366)
T ss_pred             CcccceeeCCCCCC--CCCCCccCCccccceEEccCc--------cccCCceeECCCCccHHHHHHHHHHHc-CCCEEEE
Confidence            46799999995432  236899999999999999852        123468899999999999999999999 6889999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +||++|+..++.+++++||+||++++.|+++..++...+...|+++++++..+...   .+.+ ++++|++|+|+||+|.
T Consensus        72 ~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~---~~~~-~t~lV~le~p~NPtg~  147 (366)
T PRK07582         72 PSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMAE---AALA-GADLVLAETPSNPGLD  147 (366)
T ss_pred             CCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHH---Hhcc-CceEEEEECCCCCCCC
Confidence            99999999999999999999999999999887776666677899999998765332   2334 4899999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA  390 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~  390 (466)
                      +.|+++|+++|+++|+++++|++|+.+..+.++++|+|++++|+||+++|++++++|++++ +++++++++.++...|..
T Consensus       148 v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~  227 (366)
T PRK07582        148 VCDLAALAAAAHAAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAI  227 (366)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCCCCccccCchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999998777778888899999999999999999888999887 478889999888888999


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++++.+|+++++++++..|++++++|++.++++|+++|+|.+|+||+|++||+|+++++||+|+||||||++++
T Consensus       228 ~~~~~a~l~~r~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~  301 (366)
T PRK07582        228 PGPFEAWLAHRSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELAD  301 (366)
T ss_pred             CCHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999975

>PRK06434 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=1.3e-50  Score=419.54  Aligned_cols=302  Identities=36%  Similarity=0.627  Sum_probs=270.6

Q ss_pred             CCcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 012296          151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (466)
Q Consensus       151 ~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~  230 (466)
                      ++++|+++|.|....  ..++++.+|||++++|.|++.++....+.....+|.|+|.+||++++||+.+++++|++.+++
T Consensus         7 ~~~~t~~~~~~~~~~--~~~~~~~~pI~~ss~~~~~~~~~~~~~~~~~~~~~~Y~r~~~P~~~~lE~~la~leg~~~av~   84 (384)
T PRK06434          7 NGFNTRAVQSGELRD--PRFGNVTTPIFETSTFVYPNSEKEAYMDSTRGMPYIYTRWGNPTVQAFEEKYAVLENAEHALS   84 (384)
T ss_pred             CCcccceeECCCCCC--CCCCCccCCeeCCcceecCChHHhhhccccccCCcceeCCCChhHHHHHHHHHHHhCCCcEEE
Confidence            457899999996542  347899999999999999998765433322234699999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCc
Q 012296          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (466)
Q Consensus       231 ~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG  310 (466)
                      ++|||+|+.+++.+++++||+||++...|++++.++...+...|++++++|..+.+.++  +++.++++|++|+|+||++
T Consensus        85 ~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~~~~--l~~~~tklv~~e~~snpt~  162 (384)
T PRK06434         85 FSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNPTL  162 (384)
T ss_pred             eCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCChhhee--ecCCCeeEEEEEcCCCCCc
Confidence            99999999999999999999999999999999988877788899999999987666665  5554599999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCC
Q 012296          311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGG  389 (466)
Q Consensus       311 ~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~  389 (466)
                      .+.|+++|+++||+++  +++|+++++++.++++.+|+|++++|.+|+++||++++||+++. ++++.++++..+..+|.
T Consensus       163 ~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~  240 (384)
T PRK06434        163 KVPDIKNVSSFCHEND--VIVDATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGS  240 (384)
T ss_pred             eeecHHHHHHHHHHcC--eEEECCCCCcccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCC
Confidence            9999999999999998  56799999999999999999999999999999999999999987 45677888877778899


Q ss_pred             CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       390 ~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      .++++.||+++++|++++.|++++++|++.++++|++||+|++|+||+|+      ++++||+|+|||+||++++
T Consensus       241 ~~~~~~A~l~~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~------~~~~~~~g~g~~~sf~l~~  309 (384)
T PRK06434        241 NPDPIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTE------IGKKVLRGFGGMLSFELRS  309 (384)
T ss_pred             CCCHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChH------HHHHhcCCCCceEEEEECC
Confidence            99999999999999999999999999999999999999999999999994      8999999999999999975

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=100.00  E-value=3.3e-50  Score=416.46  Aligned_cols=298  Identities=34%  Similarity=0.611  Sum_probs=272.0

Q ss_pred             ccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCC
Q 012296          154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMAS  233 (466)
Q Consensus       154 ~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sS  233 (466)
                      +|+++|.|..+  . .+++++||||+|+||.+++.+        ...+|.|+|.++|+.++||+.+++++|+++++++++
T Consensus         2 ~t~~~~~~~~~--~-~~~~~~~pi~~~~~~~~~~~~--------~~~~~~Y~r~~~p~~~~le~~la~l~g~~~~l~~~s   70 (378)
T TIGR01329         2 STLLVNTDNKN--D-PYDASSMPIYQTATFKQPLAI--------ENGPYDYTRSGNPTRTALESLLAKLDKADRAFAFSS   70 (378)
T ss_pred             CceeEeCCCCC--C-CCCCcCCCeecCcceecCCcc--------ccCCCccCCCCChHHHHHHHHHHHHhCCCcEEEECC
Confidence            68899999653  2 268999999999999987632        124699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccc
Q 012296          234 GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV  313 (466)
Q Consensus       234 Gs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~  313 (466)
                      |++|+.+++. ++++||+||++++.|+++...+...++..|+++++++..|+++++++++++ +++|++|+|+||+|.+.
T Consensus        71 G~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~-tklv~le~psnptg~v~  148 (378)
T TIGR01329        71 GMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPK-TKLVLLESPTNPLQKIV  148 (378)
T ss_pred             HHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcC-ceEEEEECCCCCCCeee
Confidence            9999988765 889999999999999998877766677889999999999999999999874 99999999999999999


Q ss_pred             cHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhCCCch
Q 012296          314 DVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGALN  392 (466)
Q Consensus       314 dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G~~ls  392 (466)
                      |+++|+++||++|+++|+|++++.+....++.+|+|++++|++|+++||+++++|+++++ +++.++++..+...|..++
T Consensus       149 dl~~I~~la~~~g~~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~  228 (378)
T TIGR01329       149 DIRKISEMAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLA  228 (378)
T ss_pred             cHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCC
Confidence            999999999999999999999988888888889999999999999999998889999875 5666888887777888999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       393 p~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++.+|+++++++++..|++++++|+..++++|++||+|.+|+||+|++||+|+++++|+.|+|+||||++++
T Consensus       229 ~~~a~l~~~~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~  300 (378)
T TIGR01329       229 PFDCWLLLRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGS  300 (378)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999954

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PLN02242 methionine gamma-lyase

Probab=100.00  E-value=4.8e-50  Score=420.07  Aligned_cols=306  Identities=31%  Similarity=0.564  Sum_probs=275.0

Q ss_pred             cccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhccc----CCccccCCCchhHHHHHHHHHhhhCCCcE
Q 012296          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRR----ASFEYGRYGNPTTVVVEEKMSALEGAEST  228 (466)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~----~~~~Y~R~~np~~~~Lee~LA~l~g~e~~  228 (466)
                      +.++++|+|..+++   .++++||||+|+||.|++.+++.+.+.+..    .+|.|+|++||+.++||+.+|+++|.+.+
T Consensus        18 ~~~~~~~~~~~~~~---~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~Pt~~~LE~~lA~l~g~~~~   94 (418)
T PLN02242         18 PAAALASARHEFGE---HGGVNMSIEASATFTVMEPDTMRRMFSGELGPDRDFYIYSRHFNPTVLNLGRQMAALEGTEAA   94 (418)
T ss_pred             hHHHHhcCCCCCCC---CCCccCCcccCCceecCCHHHHHHHhcccccccCCCccccCCCChhHHHHHHHHHHHhCCCeE
Confidence            67889999987532   367899999999999999998888776542    35899999999999999999999999999


Q ss_pred             EEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcc-cCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCC
Q 012296          229 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP-KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTN  307 (466)
Q Consensus       229 l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~-~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~N  307 (466)
                      ++++||++|+.+++.+++++||+|+++.+.|+++...+...+. ..|+++++++..|+++++++++++++++|++++|+|
T Consensus        95 l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~lesp~N  174 (418)
T PLN02242         95 YCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISN  174 (418)
T ss_pred             EEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCcCCCEEEEEecCCC
Confidence            9999999999999999999999999999999988766654443 479999999988999999999873489999999999


Q ss_pred             CCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH--
Q 012296          308 PFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--  385 (466)
Q Consensus       308 PtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--  385 (466)
                      |+|.+.|+++|+++|+++|++||+|++|. ++..++..+|+|++++|+||++++++++++|+++++++++++++..+.  
T Consensus       175 PtG~v~dl~~I~~la~~~gi~livDea~~-~~~~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~  253 (418)
T PLN02242        175 PTLTVADIPELARIAHEKGVTVVVDNTFA-PMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGA  253 (418)
T ss_pred             CCCcccCHHHHHHHHHHhCCEEEEECCCC-ccCCCHHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhh
Confidence            99999999999999999999999999996 555677788999999999999999999889999999999988886643  


Q ss_pred             --HhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhc---CCcceEEEE
Q 012296          386 --VLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM---TGFGGVVSF  460 (466)
Q Consensus       386 --~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~---~g~Gg~vsf  460 (466)
                        ..|..+.++.||+++++++++..|++++++|++.++++|++++ + +|+||+|++||+|+++++||   .|+||||||
T Consensus       254 ~~~~g~~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~~~~-~-~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf  331 (418)
T PLN02242        254 LMLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELG-L-KVIYPGLEDHPQHALLKSMANKGYGFGGLLCL  331 (418)
T ss_pred             hhccCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCC-C-EEECCCCCCCccHHHHHHhcccCCCceeEEEE
Confidence              4677889999999999999999999999999999999999996 3 89999999999999999999   599999999


Q ss_pred             Eecc
Q 012296          461 EVLM  464 (466)
Q Consensus       461 el~~  464 (466)
                      ++++
T Consensus       332 ~l~~  335 (418)
T PLN02242        332 DMDT  335 (418)
T ss_pred             EECC
Confidence            9975

>PRK08064 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=1.2e-49  Score=413.90  Aligned_cols=300  Identities=36%  Similarity=0.615  Sum_probs=275.8

Q ss_pred             cccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012296          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (466)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~s  232 (466)
                      ++|+++|.|..++  ...+++.+|||++++|.|++.++        ..+|.|+|.++|+.+.||+++|+++|++.+++++
T Consensus         7 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~~--------~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v~~~   76 (390)
T PRK08064          7 IDTLLLHNQYKHD--KQTGAVNVPIYHASTFHQFDFDT--------FGKYDYSRSGNPTREALEDIIAELEGGTKGFAFA   76 (390)
T ss_pred             cccceeeCCCCCC--CCCCCccCCcccCcceecCcccc--------cCCCcccCCCChhHHHHHHHHHHHhCCCCeEEEC
Confidence            6799999996542  34689999999999999887532        2468899999999999999999999998999999


Q ss_pred             CHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccc
Q 012296          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  312 (466)
Q Consensus       233 SGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v  312 (466)
                      |||.|+.+++. ++++||+||++++.|++++..+...++..|+++.+++..|+++++++++++ +++|++|+|+||+|.+
T Consensus        77 sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~-tklV~l~~p~NptG~~  154 (390)
T PRK08064         77 SGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPN-TKLFYVETPSNPLLKV  154 (390)
T ss_pred             CHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCC-ceEEEEECCCCCCcEe
Confidence            99999988886 789999999999999998877777778889999999988999999999875 9999999999999999


Q ss_pred             ccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhCCCc
Q 012296          313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGAL  391 (466)
Q Consensus       313 ~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G~~l  391 (466)
                      .|+++|.++|+++|+++|+|++|+.+....+..+|+|++++|+||+++|++++++|+++.+ ++++++++..+..+|..+
T Consensus       155 ~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~  234 (390)
T PRK08064        155 TDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVL  234 (390)
T ss_pred             ccHHHHHHHHHHcCCEEEEECCCCcccccCchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999998877777888999999999999999998889987765 688899999988899999


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       392 sp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      +++.+|+++++++++..|++++++|+.+++++|+++|.|.+|+||+|++||+|+++++|++|+||||||++++
T Consensus       235 ~~~~a~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~  307 (390)
T PRK08064        235 GVQDCWLVLRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQS  307 (390)
T ss_pred             CHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999975

>PRK05968 hypothetical protein; Provisional

Probab=100.00  E-value=3.9e-48  Score=402.44  Aligned_cols=300  Identities=35%  Similarity=0.575  Sum_probs=274.8

Q ss_pred             cceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCH
Q 012296          155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASG  234 (466)
Q Consensus       155 t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSG  234 (466)
                      ..+||++...   ..+++++||||+++||.|++.+++.+.+.++..+|.|+|+++|+.++||+.+|+++|++.+++++||
T Consensus        11 ~~~~~~~~~~---~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~av~~~sG   87 (389)
T PRK05968         11 AALITAHDEG---NAFDAVVPPIFQTSLFTFDSYDEMEDVYAGEKVRPIYSRGDNPTVRAFEEMLAKLEGAEDARGFASG   87 (389)
T ss_pred             hheeecCCCc---cCCCCccCCccCCcceecCCHHHHHHhhcCCCCCccccCCCChhHHHHHHHHHHHhCCCcEEEECCH
Confidence            3578988764   2478999999999999999998888877666667999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc
Q 012296          235 MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD  314 (466)
Q Consensus       235 s~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d  314 (466)
                      ++|+.+++.+++++||+||++.+.|++++..+...+...|++++++|..|++++++++ + ++++|++|+|+|+++.+.|
T Consensus        88 ~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i-~-~tklV~ie~pt~~~~~~~d  165 (389)
T PRK05968         88 MAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKAL-P-GAKLLYLESPTSWVFELQD  165 (389)
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhc-c-cCCEEEEECCCCCCCcHHH
Confidence            9999999999999999999999999998887777778889999999999999999998 4 3899999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH-HhCCCchH
Q 012296          315 VKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGGALNP  393 (466)
Q Consensus       315 l~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~-~~G~~lsp  393 (466)
                      +++|+++|+++|+++|+|++++.+....+..+|+|++++|+||+++||+++++|+++++++++++++..+. .+|+.+++
T Consensus       166 l~~i~~la~~~gi~vivD~a~a~~~~~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~  245 (389)
T PRK05968        166 VAALAALAKRHGVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSP  245 (389)
T ss_pred             HHHHHHHHHHcCCEEEEECCCcchhccCchhcCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCCh
Confidence            99999999999999999999998877778888999999999999999998889999999999988876544 57888999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       394 ~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      +.+|+++++|+++..|++++.+++++++++|+++|+|++|+||++++||     ++++.|+|||++|++++
T Consensus       246 ~~A~~~l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~-----~~~~~g~g~~~sf~~~~  311 (389)
T PRK05968        246 FEAWLLLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHP-----PAGLSGTSGLFSFIFRE  311 (389)
T ss_pred             HHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCh-----HHhCCCCceEEEEEECC
Confidence            9999999999999999999999999999999999999999999999998     56789999999999973

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=1.2e-47  Score=395.33  Aligned_cols=283  Identities=34%  Similarity=0.552  Sum_probs=252.6

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|.|...+  ..+++++||||+|+||.|++.        +...+|.|+|++||+..+||++||+++|++.++++
T Consensus         6 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~--------~~~~~~~Y~R~~~p~~~~le~~lA~leg~~~~v~~   75 (364)
T PRK07269          6 HINTILAQAGIKSD--EATGALVTPLHFSTTYQHPEF--------GQSTGFDYTRTKNPTRAKLEETLAAIESADYALAT   75 (364)
T ss_pred             CcccceeeCCCCCC--CCCCCccCCccCCcceecCCC--------CCcCCcceeCCCCccHHHHHHHHHHHhCCCeEEEe
Confidence            36799999996542  336899999999999998873        12347999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +||++|+.+++ .++++||+||++.+.|+++..++.......++++.+.  .|+++++++++++ |++|++|+|+||+|.
T Consensus        76 ~sG~aAi~~~l-~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~~--~d~~~l~~~i~~~-TklV~lesP~NPtg~  151 (364)
T PRK07269         76 SSGMSAIVLAF-SVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYA--NTEEELIAAIEED-TDIVYIETPTNPLMV  151 (364)
T ss_pred             CCHHHHHHHHH-HHhCCCCEEEEecCCcCchHHHHHHHHhcCcEEEEec--CCHHHHHHhcCcC-ceEEEEECCCCCCCe
Confidence            99999999988 5679999999999999998876655555445655543  5899999999875 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA  390 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~  390 (466)
                      +.|+++|+++|+++|+++|+|++|+.++.++++.+|+|++++|+||+++||+|+++|++++ ++++.++++..+...|..
T Consensus       152 ~~di~~I~~la~~~gi~vvvD~t~~~~~~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~  231 (364)
T PRK07269        152 EFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAV  231 (364)
T ss_pred             eeCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999888888999999999999999999999999999887 467888888777778999


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++|+.||+++++|+++..|++++++|+++++++|++||+|.+|+||+                .|||+||++++
T Consensus       232 ~s~~~a~l~~~~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg----------------~gg~~sf~~~~  289 (364)
T PRK07269        232 LSPFDSYLLMRGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTG----------------KGGMISFKVAD  289 (364)
T ss_pred             CCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCC----------------cCcEEEEEECC
Confidence            99999999999999999999999999999999999999999999997                38999999864

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=2.6e-45  Score=378.35  Aligned_cols=286  Identities=34%  Similarity=0.595  Sum_probs=259.0

Q ss_pred             CCcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 012296          151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (466)
Q Consensus       151 ~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~  230 (466)
                      ++++|+++|.|...+  ..++++.||||+|+||.+++..        +..+|.|+|++||+.++||+.||+++|++.+++
T Consensus         3 ~~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~pt~~~le~~la~l~g~~~~~~   72 (366)
T PRK08247          3 STIETKLAQIGNRSD--ERTGTVNPPVYFSTAYRHEGIG--------ESTGFDYSRTGNPTRGVLEQAIADLEGGDQGFA   72 (366)
T ss_pred             CCcchhheeCCCCCC--CCCCCccCCcccCcccccCCCC--------CcCCccccCCCCchHHHHHHHHHHHhCCCcEEE
Confidence            467899999996542  2368999999999999887632        234699999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCc
Q 012296          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (466)
Q Consensus       231 ~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG  310 (466)
                      ++||++|+.+++ .++++||+||++++.|++++..+...++..|+++.+++..|+++++++++++ +++|++|+|+||+|
T Consensus        73 ~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~-tklv~le~P~NP~~  150 (366)
T PRK08247         73 CSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPN-TKAIFIETPTNPLM  150 (366)
T ss_pred             EcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccC-ceEEEEECCCCCCC
Confidence            999999998765 6889999999999999998888877778899999999999999999999875 99999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhCC
Q 012296          311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG  389 (466)
Q Consensus       311 ~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G~  389 (466)
                      .+.|+++|+++|+++|+++|+|++|+.++...++..|+|++++|+||+++|++++++|+++++ ++++++++..+...|.
T Consensus       151 ~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~  230 (366)
T PRK08247        151 QETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGA  230 (366)
T ss_pred             cHHHHHHHHHHHHHcCCEEEEECCCccccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999988888888888999999999999999999999999986 6788888888888888


Q ss_pred             CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       390 ~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      .++++.+|+++++++++..|++++++|++.++++|+++|+|..|+||+                .|+|++|++++
T Consensus       231 ~~s~~~a~l~~~~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~----------------~gg~~sf~~~~  289 (366)
T PRK08247        231 VLSPFDSWLLIRGMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPG----------------RGGMLSFRLQD  289 (366)
T ss_pred             CCChHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCC----------------cCcEEEEEECC
Confidence            899999999999999999999999999999999999999999999996                38899998864

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.93  E-value=8.5e-25  Score=230.97  Aligned_cols=212  Identities=23%  Similarity=0.303  Sum_probs=178.4

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCC---CcchHHHHHhhcccCCceEEEeCC---C
Q 012296          210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDC---YRKTRIFIETVLPKMGITATVIDP---A  283 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~---y~~t~~~~~~~l~~~Gi~v~~vd~---~  283 (466)
                      +..+.+|+.+++++|++.+++++||++|+.+++. .+.+||+||+++..   |+++..+ ...++..|+++.+++.   .
T Consensus       122 ~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~-~l~~GdeVIvs~~e~v~~ggs~~i-~~~~~~~G~~~~~v~~~~~~  199 (454)
T TIGR00474       122 SRYSHVEGLLCELTGAEDALVVNNNAAAVLLALN-TLAKGKEVIVSRGELVEIGGSFRI-PDVMEQSGAKLVEVGTTNRT  199 (454)
T ss_pred             hHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhCCcCEEEECCChhhhhcchhhH-HHHHHHcCCEEEEeCCCCCC
Confidence            5578899999999999999999999999988884 57899999999877   4555444 3456778999999875   5


Q ss_pred             CHHHHHHhhcCCCceEEEEeCCCCCC--c--ccccHHHHHHHHHhcCCEEEEeCCCC------------CCCcccccccC
Q 012296          284 DMEGLEAALNNNNVSLFFTESPTNPF--L--RCVDVKLVSDLCHKKGAIVCIDGTFA------------TPLNQKALSLG  347 (466)
Q Consensus       284 Dle~Le~ai~~~~tklV~lesP~NPt--G--~v~dl~~Ia~la~~~gillIvDea~a------------~~~~~~~l~~g  347 (466)
                      ++++++++|+++ |++|++++++|++  |  .+.|+++|+++||++|+++++|++.+            .+..+++.++|
T Consensus       200 ~l~dle~aI~~~-T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~G  278 (454)
T TIGR00474       200 HLKDYEDAITEN-TALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAG  278 (454)
T ss_pred             CHHHHHHhcCcC-CEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcC
Confidence            789999999885 9999999999985  5  57899999999999999999998732            22335677889


Q ss_pred             CcEEEECCccccCccccceeEEEEeCHHHHHHHH----------------HHHHHhCCCchHHHHHHHHHhhHHHHHHHH
Q 012296          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR----------------NLHHVLGGALNPNAAYLIIRGMKTLHLRVQ  411 (466)
Q Consensus       348 aDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~----------------~~~~~~G~~lsp~~a~l~l~~L~tl~~R~~  411 (466)
                      +|++++|.+|+++||   .+|+++++++++++++                .+...+|..++|..+|..+++++++..|++
T Consensus       279 aDiv~fSg~K~LgGp---~~G~i~g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~  355 (454)
T TIGR00474       279 VDLVTFSGDKLLGGP---QAGIIVGKKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPE  355 (454)
T ss_pred             CCEEEecCccccCCC---eEEEEEECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHH
Confidence            999999999999998   3899999998875532                223455667788999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcC
Q 012296          412 QQNSTALRMAKILEAH  427 (466)
Q Consensus       412 ~~~~na~~La~~L~~~  427 (466)
                      ++++++++++++|++.
T Consensus       356 ~~~~~A~~la~~L~~~  371 (454)
T TIGR00474       356 ELRARAERLAKRLKAA  371 (454)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999999875

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.92  E-value=1.8e-23  Score=217.25  Aligned_cols=226  Identities=13%  Similarity=0.186  Sum_probs=177.8

Q ss_pred             CccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          201 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       201 ~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      .+.+++...|..+++|+.+|+++|.++++++++|++++.+++.+++++||+|+++.+.|.+.+..    +...|+++.++
T Consensus        54 ~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~----~~~~G~~~~~v  129 (387)
T PRK09331         54 PGRLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMHSLCKKGDYVVLDGLAHYTSYVA----AERAGLNVREV  129 (387)
T ss_pred             ccccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHH----HHHcCCEEEEE
Confidence            44556667788999999999999999888888888999999999999999999999999886643    34568888877


Q ss_pred             CC-------CCHHHHHHhhcCC------CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-ccccccc
Q 012296          281 DP-------ADMEGLEAALNNN------NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSL  346 (466)
Q Consensus       281 d~-------~Dle~Le~ai~~~------~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~  346 (466)
                      +.       .|++++++++++.      ++++|++++|+|++|.+.|+++|.++|+++|+++|+|++++.+. ..+...+
T Consensus       130 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~  209 (387)
T PRK09331        130 PKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKL  209 (387)
T ss_pred             eCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHc
Confidence            65       3789999988642      48999999999999999999999999999999999999998654 3455567


Q ss_pred             CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH--------HhCCCchHHHHHHHHHhhH---HHHHHHHHHHH
Q 012296          347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--------VLGGALNPNAAYLIIRGMK---TLHLRVQQQNS  415 (466)
Q Consensus       347 gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--------~~G~~lsp~~a~l~l~~L~---tl~~R~~~~~~  415 (466)
                      |+|+++.|++|++++++  .+|++++++++++.++....        .+|.++.+..++.++..++   ....+++++.+
T Consensus       210 g~D~~~~s~~K~l~~~~--~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~  287 (387)
T PRK09331        210 GADFIVGSGHKSMAASA--PSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVK  287 (387)
T ss_pred             CCCEEEeeCcccccCCC--CEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999998765  47899999998887755432        1333332222222222332   33345677788


Q ss_pred             HHHHHHHHHHcCCCeEE
Q 012296          416 TALRMAKILEAHPKVKR  432 (466)
Q Consensus       416 na~~La~~L~~~p~V~~  432 (466)
                      +++++.+.|+++++++.
T Consensus       288 ~~~~l~~~L~~l~g~~~  304 (387)
T PRK09331        288 KARWFVDELEKIEGFKQ  304 (387)
T ss_pred             HHHHHHHHHhcCCCEEE
Confidence            99999999999987653

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.91  E-value=1e-22  Score=212.07  Aligned_cols=222  Identities=19%  Similarity=0.271  Sum_probs=164.0

Q ss_pred             chhHHHHHHHHHhh----hCC----CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEE
Q 012296          209 NPTTVVVEEKMSAL----EGA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (466)
Q Consensus       209 np~~~~Lee~LA~l----~g~----e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~  279 (466)
                      +....+|++.+++.    +|.    ++.+++++|+ +|+..++.+++.+||+||+++|.|+.....+    ...|.++..
T Consensus        64 ~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~----~~~gg~~v~  139 (393)
T COG0436          64 SAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAV----KLAGGKPVP  139 (393)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHH----HhcCCEEEE
Confidence            33444666666654    342    3435555555 9999999999999999999999999866433    345666666


Q ss_pred             eCC--------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc-----c
Q 012296          280 IDP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-----A  343 (466)
Q Consensus       280 vd~--------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~-----~  343 (466)
                      ++.        .|+++|++++++ +||+|++++||||||.+++   +++|+++|++||++||.||+|.......     .
T Consensus       140 v~l~~~~~~f~~d~~~l~~~i~~-ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~  218 (393)
T COG0436         140 VPLDEEENGFKPDLEDLEAAITP-KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSI  218 (393)
T ss_pred             EeCCcCccCCcCCHHHHHhhcCc-cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCH
Confidence            542        269999999999 5999999999999999986   7889999999999999999987543321     1


Q ss_pred             ccc----CCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhCCCchHHHHH---HHHHhh---HHHHHHHHH
Q 012296          344 LSL----GADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGALNPNAAY---LIIRGM---KTLHLRVQQ  412 (466)
Q Consensus       344 l~~----gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G~~lsp~~a~---l~l~~L---~tl~~R~~~  412 (466)
                      +..    ...|+++|+||.++.+|++ .||++++ +++++.+.+.+.....+.+....+   .++..-   +.+....+.
T Consensus       219 ~~~~~~~~~~i~i~s~SK~~~mtGwR-vG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~  297 (393)
T COG0436         219 LELAGARDRTITINSFSKTYGMTGWR-IGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREE  297 (393)
T ss_pred             hhcCCCcceEEEEecccccccccccc-eeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            222    1358999999999999975 7999988 888888887766655444443333   334332   234444467


Q ss_pred             HHHHHHHHHHHHHcCCCeEEEeCC
Q 012296          413 QNSTALRMAKILEAHPKVKRVHYP  436 (466)
Q Consensus       413 ~~~na~~La~~L~~~p~V~~V~yP  436 (466)
                      ..++++.+.+.|.+.+++..+.+|
T Consensus       298 ~~~rrd~l~~~l~~~~g~~~~~~p  321 (393)
T COG0436         298 YRERRDLLVEALNEIGGLSVVKPP  321 (393)
T ss_pred             HHHHHHHHHHHHHhcCCeeeccCC
Confidence            889999999999999877665544

>PRK04311 selenocysteine synthase; Provisional

Probab=99.91  E-value=1.3e-23  Score=222.55  Aligned_cols=213  Identities=23%  Similarity=0.296  Sum_probs=170.7

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCc---chHHHHHhhcccCCceEEEeCC---C
Q 012296          210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYR---KTRIFIETVLPKMGITATVIDP---A  283 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~---~t~~~~~~~l~~~Gi~v~~vd~---~  283 (466)
                      +..+.+|+.+++++|++++++++||++|+.+++.+ +.+||+||+++..|.   ++..+ ...+...|+++.+++.   .
T Consensus       127 ~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~-l~~GdeVIvs~~e~~~~ggs~~i-~~~~~~~G~~l~~v~~~~~t  204 (464)
T PRK04311        127 SRDRALAALLCALTGAEDALVVNNNAAAVLLALNA-LAAGKEVIVSRGELVEIGGAFRI-PDVMRQAGARLVEVGTTNRT  204 (464)
T ss_pred             hHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHH-hCCCCEEEEcchhhhhcCcchhh-HHHHHHCCcEEEEECCCCCC
Confidence            45678999999999999999999999999988855 689999999987543   33332 3345678999888875   4


Q ss_pred             CHHHHHHhhcCCCceEEEEeCCCCCC----cccccHHHHHHHHHhcCCEEEEeCCCC------------CCCcccccccC
Q 012296          284 DMEGLEAALNNNNVSLFFTESPTNPF----LRCVDVKLVSDLCHKKGAIVCIDGTFA------------TPLNQKALSLG  347 (466)
Q Consensus       284 Dle~Le~ai~~~~tklV~lesP~NPt----G~v~dl~~Ia~la~~~gillIvDea~a------------~~~~~~~l~~g  347 (466)
                      ++++++++|+++ |++|++++++|++    +...|+++|+++||+||+++++|+..+            .+..++++++|
T Consensus       205 ~~~dle~aI~~~-TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~G  283 (464)
T PRK04311        205 HLRDYEQAINEN-TALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAG  283 (464)
T ss_pred             CHHHHHHhcCcc-CeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcC
Confidence            689999999885 9999999999983    467899999999999999999999421            23335667789


Q ss_pred             CcEEEECCccccCccccceeEEEEeCHHHHHHHHH--HHHH---hCCCchHHHH-----------HHHHHhhHHHHHHHH
Q 012296          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHHV---LGGALNPNAA-----------YLIIRGMKTLHLRVQ  411 (466)
Q Consensus       348 aDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~--~~~~---~G~~lsp~~a-----------~l~l~~L~tl~~R~~  411 (466)
                      +|++++|++|+++||.   +|+++++++++++++.  +.+.   -+.+++++.+           +..++.++++..|++
T Consensus       284 aDiv~fSg~K~LgGp~---~G~i~g~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~  360 (464)
T PRK04311        284 VDLVTFSGDKLLGGPQ---AGIIVGKKELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPE  360 (464)
T ss_pred             CcEEEecCcccccCCc---eEEEEEcHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHH
Confidence            9999999999999984   8999999999988763  1111   2334444444           444566778999999


Q ss_pred             HHHHHHHHHHHHHHcCC
Q 012296          412 QQNSTALRMAKILEAHP  428 (466)
Q Consensus       412 ~~~~na~~La~~L~~~p  428 (466)
                      ++++++++++++|++++
T Consensus       361 ~~~~~A~~la~~L~~~~  377 (464)
T PRK04311        361 ELRARAERLAAALKAAL  377 (464)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999999886

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.91  E-value=7.7e-23  Score=210.02  Aligned_cols=224  Identities=13%  Similarity=0.229  Sum_probs=171.2

Q ss_pred             cccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC-
Q 012296          203 EYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-  281 (466)
Q Consensus       203 ~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd-  281 (466)
                      ..+...+|...++++.+++++|.++++++++|++++..++.+++++||+|+++.+.|.+.+.    .+...|+++..++ 
T Consensus        37 ~~~~~~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~v~~  112 (361)
T cd06452          37 RLDEIEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSYV----AAERAGLNVREVPN  112 (361)
T ss_pred             ccccccCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHHH----HHHhcCCEEEEEec
Confidence            34445678999999999999999777777777799999999999999999999999887653    2455688887764 


Q ss_pred             ------CCCHHHHHHhhcC------CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCC
Q 012296          282 ------PADMEGLEAALNN------NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGA  348 (466)
Q Consensus       282 ------~~Dle~Le~ai~~------~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~ga  348 (466)
                            ..|++++++++++      .++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+. ......+++
T Consensus       113 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~  192 (361)
T cd06452         113 TGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGA  192 (361)
T ss_pred             CCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCHHHcCC
Confidence                  2378999988862      248999999999999999999999999999999999999987653 245556789


Q ss_pred             cEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHH--------hCCCchHHHHHHHHHhhHHHH---HHHHHHHHHH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--------LGGALNPNAAYLIIRGMKTLH---LRVQQQNSTA  417 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~--------~G~~lsp~~a~l~l~~L~tl~---~R~~~~~~na  417 (466)
                      |+++.|+||++++++  ++|+++++++++++++..+..        .+.+.....++.++..++.+.   .++++..+++
T Consensus       193 d~~~~s~~K~l~~~~--~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~  270 (361)
T cd06452         193 DFIVGSGHKSMAASA--PIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKA  270 (361)
T ss_pred             CEEEecCCccccCCC--CeEEEEECHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998765  579999999999888664432        122222222333333343332   3444555677


Q ss_pred             HHHHHHHHcCCCeEE
Q 012296          418 LRMAKILEAHPKVKR  432 (466)
Q Consensus       418 ~~La~~L~~~p~V~~  432 (466)
                      +++.+.|+++|+++.
T Consensus       271 ~~l~~~L~~l~g~~v  285 (361)
T cd06452         271 RWFVAELEKIEGIKQ  285 (361)
T ss_pred             HHHHHHHhcCCCeEE
Confidence            899999999987753

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.91  E-value=2.2e-22  Score=209.69  Aligned_cols=212  Identities=16%  Similarity=0.165  Sum_probs=164.9

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC
Q 012296          204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  283 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~  283 (466)
                      |+|..  ...+||+++|+++|.++++++++|+.|+..++.+++++||+|+++++.|+++...+    ...+.++.+++..
T Consensus        39 yg~~~--~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~l~~~GD~Vl~~~~~h~s~~~~~----~l~~~~~~~~~~~  112 (392)
T PLN03227         39 YGTID--AHLELEQCMAEFLGTESAILYSDGASTTSSTVAAFAKRGDLLVVDRGVNEALLVGV----SLSRANVRWFRHN  112 (392)
T ss_pred             cCChH--HHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHhCCCCCEEEEeccccHHHHHHH----HHcCCeEEEeCCC
Confidence            66644  78999999999999999999999998888999999999999999999999876443    1224566666666


Q ss_pred             CHHHHHH---hhcC----------CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc---------
Q 012296          284 DMEGLEA---ALNN----------NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---------  341 (466)
Q Consensus       284 Dle~Le~---ai~~----------~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~---------  341 (466)
                      |++++++   .+++          .++++|++|+|.|++|.+.|+++|.++|++||+++|+||+++.+...         
T Consensus       113 d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~  192 (392)
T PLN03227        113 DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEH  192 (392)
T ss_pred             CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHH
Confidence            6655554   3321          14899999999999999999999999999999999999998744321         


Q ss_pred             ---cccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHH--HHHhCCCchHHHHHHHHHhhHH---HHHHHHHH
Q 012296          342 ---KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL--HHVLGGALNPNAAYLIIRGMKT---LHLRVQQQ  413 (466)
Q Consensus       342 ---~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~--~~~~G~~lsp~~a~l~l~~L~t---l~~R~~~~  413 (466)
                         .| ..++|+++.|++|+++.    ++|++++++++++.++..  ...+++.++|..++.++..++.   .+.++++.
T Consensus       193 ~g~~p-~~~~Div~~slsk~~g~----~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l  267 (392)
T PLN03227        193 AGLKP-MVHAEIVTFSLENAFGS----VGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRL  267 (392)
T ss_pred             cCCCC-CCCceEEEeechhhhhc----cCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence               12 23679999999999874    468899999988776543  2356666678766666554433   24567788


Q ss_pred             HHHHHHHHHHHHc
Q 012296          414 NSTALRMAKILEA  426 (466)
Q Consensus       414 ~~na~~La~~L~~  426 (466)
                      .++.+++.+.|++
T Consensus       268 ~~~~~~l~~~L~~  280 (392)
T PLN03227        268 HDSIANLYSTLTN  280 (392)
T ss_pred             HHHHHHHHHHHHh
Confidence            8999999999974

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=5e-22  Score=207.40  Aligned_cols=246  Identities=19%  Similarity=0.233  Sum_probs=186.5

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCCC--cEEEeCCHH-HHHHHHHHHH---ccCCCEEEEcCCCCcchHHHHHhhcccCCc
Q 012296          202 FEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGM-SASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGI  275 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~g~e--~~l~~sSGs-~Ai~~al~al---l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi  275 (466)
                      |..+.......++.|+.+|+++|++  +.|+++.|+ +++++++.++   +++||+||+++..|+++...+....++.|+
T Consensus        58 ~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga  137 (405)
T COG0520          58 HTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGA  137 (405)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCc
Confidence            3334344456788999999999985  667777666 9999999988   699999999999999988888777778899


Q ss_pred             eEEEeCCC-----CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCc
Q 012296          276 TATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGAD  349 (466)
Q Consensus       276 ~v~~vd~~-----Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaD  349 (466)
                      ++++++..     ++++++..++++ ||+|.+...+|.||.+.|+++|+++||++|+++++|.+++.+. ..+..++|+|
T Consensus       138 ~v~~i~~~~~g~~~~~~~~~~i~~~-Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~D  216 (405)
T COG0520         138 KVRVIPLDDDGLLDLDALEKLITPK-TKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCD  216 (405)
T ss_pred             EEEEEecCCCCCcCHHHHHHhcCCC-ceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCC
Confidence            99888743     589999988885 9999999999999999999999999999999999999987654 4566678999


Q ss_pred             EEEECCccccCccccceeEEEEeCHHHHHHHHHHH----------------------HHhCCCchHHHHHHHHHhhHHH-
Q 012296          350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH----------------------HVLGGALNPNAAYLIIRGMKTL-  406 (466)
Q Consensus       350 ivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~----------------------~~~G~~lsp~~a~l~l~~L~tl-  406 (466)
                      ++++|.|||+.||.  ..|++++++++++.+.-..                      +.-.++.+....+.+..+++.+ 
T Consensus       217 f~afsgHKwl~gP~--GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~  294 (405)
T COG0520         217 FLAFSGHKWLLGPT--GIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLL  294 (405)
T ss_pred             EEEEcccccccCCC--ceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHH
Confidence            99999999888885  3699999999998872111                      0111222222222222223222 


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          407 ----HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       407 ----~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                          ....++.++.++++.+.|+++|+++ ++.|..             ...+++++|.+++
T Consensus       295 ~ig~~~i~~~e~~L~~~~~~~L~~~~~v~-i~g~~~-------------~~r~~~vsF~v~~  342 (405)
T COG0520         295 EIGMEAIEAHERELTEYLLEGLSELPGVE-IYGPPD-------------ADRGGIVSFNVKG  342 (405)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHhcCCCeE-EecCCc-------------ccCceEEEEEeCC
Confidence                2233445677888999999999985 444432             1257888988875

>PRK07324 transaminase; Validated

Probab=99.89  E-value=1.2e-21  Score=202.50  Aligned_cols=224  Identities=15%  Similarity=0.193  Sum_probs=162.3

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEE
Q 012296          202 FEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~  278 (466)
                      +.|+..  .....|++.++++++.   ++.++++++++|+.+++.+++.+||+|+++.|.|.....    .++..|.+++
T Consensus        56 ~~Y~~~--~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~----~~~~~g~~v~  129 (373)
T PRK07324         56 LTYGWI--EGSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLYD----IPESLGAEVD  129 (373)
T ss_pred             ccCCCC--CCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH----HHHHcCCEEE
Confidence            455542  2345899999998753   344444455599999999999999999999999987543    3445677777


Q ss_pred             EeCC-------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----cc
Q 012296          279 VIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----AL  344 (466)
Q Consensus       279 ~vd~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----~l  344 (466)
                      .++.       .|+++++++++++ +|+|++++|+||||.+.+   +++|+++|+++|+++|+|++|.......    ..
T Consensus       130 ~v~~~~~~~~~~d~~~l~~~~~~~-~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~  208 (373)
T PRK07324        130 YWQLKEENGWLPDLDELRRLVRPN-TKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIA  208 (373)
T ss_pred             EEecccccCCCCCHHHHHHhCCCC-CcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChh
Confidence            6652       3789999988774 999999999999999998   8889999999999999999986532211    11


Q ss_pred             c-cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH---H-HHHHHHHHHHHHHH
Q 012296          345 S-LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---T-LHLRVQQQNSTALR  419 (466)
Q Consensus       345 ~-~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~---t-l~~R~~~~~~na~~  419 (466)
                      . ....|++.|+||.++.+|. +.||+++++++++++++.+.....+.+.+..+++...++   . +....+...++++.
T Consensus       209 ~~~~~~I~~~s~SK~~~~~G~-RiG~i~~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~  287 (373)
T PRK07324        209 DLYEKGISTNSMSKTYSLPGI-RVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLAI  287 (373)
T ss_pred             hccCCEEEEecchhhcCCccc-eeEEEecCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            1 1235889999999998874 579999999999999887764433334444444433333   2 23333445677888


Q ss_pred             HHHHHHcCCCeEEE
Q 012296          420 MAKILEAHPKVKRV  433 (466)
Q Consensus       420 La~~L~~~p~V~~V  433 (466)
                      +.++|++++.+..+
T Consensus       288 l~~~l~~~~~~~~~  301 (373)
T PRK07324        288 LDEWVAKEPRVSYV  301 (373)
T ss_pred             HHHHHhcCCCceEE
Confidence            99999988766543

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=1.5e-21  Score=200.08  Aligned_cols=221  Identities=15%  Similarity=0.248  Sum_probs=165.8

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      +.+|+++....|++.+|++++. .+.+++++|+ +++..++.+++++||+|++++|.|.....    ..+..|.++..++
T Consensus        53 ~~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~  128 (351)
T PRK14807         53 VNIYPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSV----YSKIAGAVEIPVK  128 (351)
T ss_pred             ccCCCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHH----HHHHcCCeEEEee
Confidence            4556666778999999999987 3567777777 78899999999999999999999986432    3345677766654


Q ss_pred             C-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccc---c-ccCCcEEE
Q 012296          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA---L-SLGADLVL  352 (466)
Q Consensus       282 ~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~---l-~~gaDivv  352 (466)
                      .     .|++++++++++.++++|++++|+||||.+.+.+++.+++++++.++|+|++|........   . .....+++
T Consensus       129 ~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~  208 (351)
T PRK14807        129 LKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVL  208 (351)
T ss_pred             cCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEE
Confidence            2     3789999999764589999999999999999999999999998889999999864321111   1 22346999


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHcCCCe
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM--KTLHLRVQQQNSTALRMAKILEAHPKV  430 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L--~tl~~R~~~~~~na~~La~~L~~~p~V  430 (466)
                      .|+||.++.+| ++.||+++++++++.++.......  .+.....++...+  ..+..+++...++++.+.+.|++.+++
T Consensus       209 ~S~SK~~~~~G-lRiG~~v~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g~  285 (351)
T PRK14807        209 RTLSKAFGLAG-LRVGYAVANENILKYLNLVKSPYN--INSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKIPGI  285 (351)
T ss_pred             ecchHhcccch-hceeeeecCHHHHHHHHHccCCCC--cCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99999998777 458999999999998876554322  3344333333333  245556666778888899999877765


Q ss_pred             E
Q 012296          431 K  431 (466)
Q Consensus       431 ~  431 (466)
                      .
T Consensus       286 ~  286 (351)
T PRK14807        286 K  286 (351)
T ss_pred             E
Confidence            3

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.89  E-value=3.3e-21  Score=201.48  Aligned_cols=216  Identities=16%  Similarity=0.223  Sum_probs=157.8

Q ss_pred             hhHHHHHHHHHhhhCC---C-cEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC--
Q 012296          210 PTTVVVEEKMSALEGA---E-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~---e-~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--  282 (466)
                      +.++.+.+.+++.+|.   . +.+++++|+ +++..++.+++++||+|++++|.|+.....    +...|.++..++.  
T Consensus        82 ~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~----~~~~g~~v~~v~~~~  157 (405)
T PRK06207         82 DIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKL----VEFFEGEMVPVQLDY  157 (405)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHHHH----HHHcCCEEEEEeccc
Confidence            4455566666666674   2 456666665 999999999999999999999999875533    3445666554432  


Q ss_pred             --------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----c-ccc-
Q 012296          283 --------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----K-ALS-  345 (466)
Q Consensus       283 --------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~-~l~-  345 (466)
                              .|+++|+++++++ +++|++++|+||||.+++   +++|+++|+++|++||+||+|....+.    . ... 
T Consensus       158 ~~~~~~~~~d~~~l~~~~~~~-~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~  236 (405)
T PRK06207        158 LSADKRAGLDLDQLEEAFKAG-VRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRAL  236 (405)
T ss_pred             cCcccCCCcCHHHHHHhhhhc-CeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcC
Confidence                    3789999998775 899999999999999997   677888999999999999998753321    1 111 


Q ss_pred             ---cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHH
Q 012296          346 ---LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTAL  418 (466)
Q Consensus       346 ---~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~na~  418 (466)
                         ...-+++.|+||.++.+| .+.||+++++++++++...........+.....++...+    ..+..+++++.++++
T Consensus       237 ~~~~~~vi~i~SfSK~~~lpG-lRiG~ii~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~  315 (405)
T PRK06207        237 PIDPENVITIMGPSKTESLSG-YRLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRD  315 (405)
T ss_pred             CCCcCcEEEEecchhhccCcc-cceEEEEcCHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence               123489999999999777 468999999999999988776555444333333322222    346677778888888


Q ss_pred             HHHHHHHcCCCeE
Q 012296          419 RMAKILEAHPKVK  431 (466)
Q Consensus       419 ~La~~L~~~p~V~  431 (466)
                      .+.+.|++++++.
T Consensus       316 ~l~~~L~~~~~~~  328 (405)
T PRK06207        316 DLLRVLRGVEGVF  328 (405)
T ss_pred             HHHHHHhcCCCce
Confidence            8999998875543

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.89  E-value=1.4e-21  Score=201.81  Aligned_cols=214  Identities=13%  Similarity=0.168  Sum_probs=164.0

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC-----
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----  283 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----  283 (466)
                      +|....+++.+|+++|.+.++++++|++++..++.+++++||+|+++.+.|.+.+.    .++..|+++..++..     
T Consensus        50 ~~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~----~~~~~g~~~~~~~~~~~~~~  125 (370)
T TIGR02539        50 KPPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYV----AAERAGLNVKEVPHTGHPEY  125 (370)
T ss_pred             chHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHH----HHHHcCCEEEEEecCCcccC
Confidence            45778889999999999999999999999999999999999999999999877653    245668888777653     


Q ss_pred             --CHHHHHHhhcC------CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEEC
Q 012296          284 --DMEGLEAALNN------NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHS  354 (466)
Q Consensus       284 --Dle~Le~ai~~------~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S  354 (466)
                        |+++|++++++      .++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+. .......++|+++.|
T Consensus       126 ~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s  205 (370)
T TIGR02539       126 KVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGS  205 (370)
T ss_pred             CcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEee
Confidence              89999999863      247899999999999999999999999999999999999988753 234445678999999


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHHHHHhC--------CCchHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHH
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG--------GALNPNAAYLIIRGMKTLH---LRVQQQNSTALRMAKI  423 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G--------~~lsp~~a~l~l~~L~tl~---~R~~~~~~na~~La~~  423 (466)
                      ++|++++++  ..|++++++++++.++.....+.        .......+..+...++...   .++++..++++++.+.
T Consensus       206 ~sK~~~~~g--~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~  283 (370)
T TIGR02539       206 GHKSMAASG--PCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAE  283 (370)
T ss_pred             CcccccCCC--CEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999765  36999999999998876553221        1111112222222333222   2334455667789999


Q ss_pred             HHcCC
Q 012296          424 LEAHP  428 (466)
Q Consensus       424 L~~~p  428 (466)
                      |++.+
T Consensus       284 L~~~g  288 (370)
T TIGR02539       284 LEDIG  288 (370)
T ss_pred             HHhCC
Confidence            98874

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PLN02721 threonine aldolase

Probab=99.89  E-value=5.5e-21  Score=194.44  Aligned_cols=220  Identities=20%  Similarity=0.281  Sum_probs=165.4

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc-CCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC----
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~-~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----  282 (466)
                      .+|...+||+.++++++.+..+++++|++++..++..++. +||+|++++++|...+... ..+...|+++..++.    
T Consensus        38 ~~~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~  116 (353)
T PLN02721         38 YDPTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENG-GISTLGGVHPRTVKNNEDG  116 (353)
T ss_pred             CCHHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHHccCCCCeEEEcCccceehhccc-chhhhcCceeEecCCCcCC
Confidence            4677899999999999998889999999888788877777 9999999999987544310 123456887777752    


Q ss_pred             -CCHHHHHHhhcC------CCceEEEEeCC-CCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCC----cccc--cc
Q 012296          283 -ADMEGLEAALNN------NNVSLFFTESP-TNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPL----NQKA--LS  345 (466)
Q Consensus       283 -~Dle~Le~ai~~------~~tklV~lesP-~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~----~~~~--l~  345 (466)
                       .|++++++++++      .++++|+++++ +||+|.+.|   +++|.++|+++|+++|+|+++....    ...+  ..
T Consensus       117 ~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~  196 (353)
T PLN02721        117 TMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLV  196 (353)
T ss_pred             CcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHh
Confidence             479999999972      14899999885 678999887   6899999999999999999864221    1122  23


Q ss_pred             cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012296          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP--NAAYLIIRGMKTLHLRVQQQNSTALRMAKI  423 (466)
Q Consensus       346 ~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp--~~a~l~l~~L~tl~~R~~~~~~na~~La~~  423 (466)
                      .++|.++.|+||+++++   .||++++++++++.+...+...++.+..  ..+...+.+++....++++..++++.+.+.
T Consensus       197 ~~~d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~  273 (353)
T PLN02721        197 KAADSVSVCLSKGLGAP---VGSVIVGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQENVPKLEDDHKKAKLLAEG  273 (353)
T ss_pred             hhCCEEEEecccccCCc---eeeEEecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999975   3566788999998887776655544322  233344456666556677777888999999


Q ss_pred             HHcCCCeE
Q 012296          424 LEAHPKVK  431 (466)
Q Consensus       424 L~~~p~V~  431 (466)
                      |++++++.
T Consensus       274 L~~~~~~~  281 (353)
T PLN02721        274 LNQIKGLR  281 (353)
T ss_pred             HHhCCCcE
Confidence            99887764

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.89  E-value=2.3e-21  Score=201.41  Aligned_cols=216  Identities=17%  Similarity=0.196  Sum_probs=163.1

Q ss_pred             chhHHHHHHHHHhhhCC----CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          209 NPTTVVVEEKMSALEGA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~----e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      .+.++.+++.+++.+|.    ++.+++++|+ +++..++.+++++||+|++++|.|......    +...|+++.+++. 
T Consensus        68 ~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~~  143 (389)
T PRK05957         68 PPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMA----ITMAGCQPILVPTD  143 (389)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHH----HHhcCCEEEEeecC
Confidence            35677888888888775    4456666666 899888888999999999999999875432    3456888777643 


Q ss_pred             ----CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----ccc----cc
Q 012296          283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL----SL  346 (466)
Q Consensus       283 ----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----~~l----~~  346 (466)
                          .|+++++++++++ +++|++.+|+||||.+++   +++|+++|+++|+++|+|++|......     .+.    ..
T Consensus       144 ~~~~~d~~~l~~~i~~~-~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~  222 (389)
T PRK05957        144 DNYQLQPEAIEQAITPK-TRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSG  222 (389)
T ss_pred             CCCCcCHHHHHHhcCcC-ceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCcc
Confidence                3789999999874 999999999999999997   888999999999999999998643221     111    11


Q ss_pred             CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHH
Q 012296          347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRMAK  422 (466)
Q Consensus       347 gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~na~~La~  422 (466)
                      ...+++.|+||.++.+|. +.|++++++++++++.......+.+.+.....++...+    ..++..+++..++++.+.+
T Consensus       223 ~~~i~~~S~SK~~g~~Gl-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~  301 (389)
T PRK05957        223 NHTISLYSLSKAYGFASW-RIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLK  301 (389)
T ss_pred             CcEEEEecchhhccCccc-eeEEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            245889999999988874 58999999999999988776555444444444433333    2355556677888888999


Q ss_pred             HHHcCCCe
Q 012296          423 ILEAHPKV  430 (466)
Q Consensus       423 ~L~~~p~V  430 (466)
                      .|++++++
T Consensus       302 ~L~~~~~~  309 (389)
T PRK05957        302 SLGQLQDR  309 (389)
T ss_pred             HHHhcCCC
Confidence            99877553

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.89  E-value=2.1e-21  Score=202.02  Aligned_cols=220  Identities=15%  Similarity=0.199  Sum_probs=161.8

Q ss_pred             chhHHHHHHHHHhhhCC-C-cEEEe-CCHHHHHHHHHHHH----ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          209 NPTTVVVEEKMSALEGA-E-STVIM-ASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~-e-~~l~~-sSGs~Ai~~al~al----l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ....+++++.+++++|+ + +.+++ +++++++.+++.++    +++||+||++++.|++.+..+....+..|++++.++
T Consensus        62 ~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  141 (401)
T PRK10874         62 TARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLP  141 (401)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEe
Confidence            34577889999999998 3 45554 45569999999887    478999999999999876555555677788888775


Q ss_pred             C-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC-CcccccccCCcEEEECC
Q 012296          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSA  355 (466)
Q Consensus       282 ~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~-~~~~~l~~gaDivv~S~  355 (466)
                      .     .|+++++++++++ |++|++++|+||||.+.|+++|.++|+++|+++++|++++.+ ...+...+++|+++.|+
T Consensus       142 ~~~~~~~d~~~l~~~i~~~-t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~  220 (401)
T PRK10874        142 LGADRLPDVDLLPELITPR-TRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSG  220 (401)
T ss_pred             cCCCCcCCHHHHHHhcCcC-cEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEec
Confidence            3     3789999999875 999999999999999999999999999999999999998643 23333456899999999


Q ss_pred             ccccCccccceeEEEEeCHHHHHHHHHHH---------------------HHhCCCchHHHHHHHHHhhHHHH-----HH
Q 012296          356 TKFIGGHNDVLAGSISGSGKLVTQIRNLH---------------------HVLGGALNPNAAYLIIRGMKTLH-----LR  409 (466)
Q Consensus       356 sK~lgg~gdv~gG~ivg~~eli~~l~~~~---------------------~~~G~~lsp~~a~l~l~~L~tl~-----~R  409 (466)
                      +|++|++|   .|+++.++++++++..+.                     ....++.+......+..+++.+.     ..
T Consensus       221 ~K~~gp~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~  297 (401)
T PRK10874        221 HKLYGPTG---IGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQA  297 (401)
T ss_pred             ccccCCCc---cEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHH
Confidence            99887665   589999998887654221                     00011222222222223333332     22


Q ss_pred             HHHHHHHHHHHHHHHHcCCCeEE
Q 012296          410 VQQQNSTALRMAKILEAHPKVKR  432 (466)
Q Consensus       410 ~~~~~~na~~La~~L~~~p~V~~  432 (466)
                      .++..+.++++.+.|+++|+++.
T Consensus       298 ~~~~~~l~~~l~~~l~~~~g~~~  320 (401)
T PRK10874        298 ESWSRSLATLAEDALAKLPGFRS  320 (401)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEE
Confidence            34455678888899998887753

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.89  E-value=1.2e-21  Score=201.42  Aligned_cols=220  Identities=17%  Similarity=0.248  Sum_probs=177.9

Q ss_pred             cccCCCchhHHHHHHHHHhhhC-C-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEE
Q 012296          203 EYGRYGNPTTVVVEEKMSALEG-A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (466)
Q Consensus       203 ~Y~R~~np~~~~Lee~LA~l~g-~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~  279 (466)
                      .+.||+++...+|++.+++++| . .+.|++++|+ +.|..++++++.+||.|++..|+|....    ..++..|.++..
T Consensus        50 ~~~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~----~~a~~~g~~~~~  125 (356)
T COG0079          50 KLNRYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYE----IAAQLAGAEVVK  125 (356)
T ss_pred             hhccCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhhcCCCEEEEcCCChHHHH----HHHHhcCCeEEE
Confidence            5889999999999999999999 5 4688889999 8999999999999999999999998754    334567877777


Q ss_pred             eCC----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhc--CCEEEEeCCCCCCCcccccc----cCCc
Q 012296          280 IDP----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLNQKALS----LGAD  349 (466)
Q Consensus       280 vd~----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~--gillIvDea~a~~~~~~~l~----~gaD  349 (466)
                      ++.    .|++.+.+++++ ++++||+++||||||...+.++|.+++...  +.+||+||+|......+...    ...-
T Consensus       126 v~~~~~~~d~~~~~~~~~~-~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nl  204 (356)
T COG0079         126 VPLKEFRLDLDAILAAIRD-KTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNL  204 (356)
T ss_pred             ecccccccCHHHHHHhhhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCE
Confidence            765    578999999988 499999999999999999988888887753  78999999987654422221    2335


Q ss_pred             EEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012296          350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP-NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       350 ivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp-~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p  428 (466)
                      +++.|+||.||.+| ++.|++++++++++.+++.+..+..+... ..+..+++.-+.+..++++..+.++++.+.|++++
T Consensus       205 ivlRTfSKa~gLAG-lRlGy~ia~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~  283 (356)
T COG0079         205 IVLRTFSKAFGLAG-LRVGYAIANPELIAALNKVRPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKALG  283 (356)
T ss_pred             EEEEecHHhhhcch-hceeeccCCHHHHHHHHHhcCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            89999999999998 56899999999999999998877654322 22333334446677888888999999999999987

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.89  E-value=4e-21  Score=194.90  Aligned_cols=212  Identities=21%  Similarity=0.260  Sum_probs=167.2

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHH
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~  287 (466)
                      ..+..+++++.++++++.++.+++++|++++..++.+++++||+|+++++.|++....    +...|.++..++..|.++
T Consensus        44 ~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~  119 (349)
T cd06454          44 TSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDG----IRLSGAKKRIFKHNDMED  119 (349)
T ss_pred             CchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHHHhcCCCCEEEEehhhhHHHHHH----HHHcCCceEEecCCCHHH
Confidence            4788899999999999998899999999999888888899999999999999875533    345688888777778888


Q ss_pred             HHHhhcC----CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc---------ccccccCCcEEEEC
Q 012296          288 LEAALNN----NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---------QKALSLGADLVLHS  354 (466)
Q Consensus       288 Le~ai~~----~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~---------~~~l~~gaDivv~S  354 (466)
                      +++++++    .++++|++++++||+|...|+++|+++|+++|+++|+|++++.+..         ......+.|+++.|
T Consensus       120 le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s  199 (349)
T cd06454         120 LEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGT  199 (349)
T ss_pred             HHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEee
Confidence            9888864    3478999999999999999999999999999999999999864321         11123578999999


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHHHHH--hCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~--~G~~lsp~~a~l~l~~L~tl---~~R~~~~~~na~~La~~L~~~  427 (466)
                      ++|++++.    +|++++++++++.++.....  .++..++.....+...++.+   ..+.++..++++.+.+.|+++
T Consensus       200 ~sK~~~~~----gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  273 (349)
T cd06454         200 LGKAFGAV----GGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL  273 (349)
T ss_pred             chhhhccc----CCEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence            99999874    48888999988877654432  23345555444444455443   456677788889998888875

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.88  E-value=3.6e-21  Score=197.78  Aligned_cols=220  Identities=18%  Similarity=0.223  Sum_probs=164.4

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHHcc---CCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          210 PTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVP---AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e---~~l~~sSGs~Ai~~al~all~---~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      ....++++.+++++|.+   +.++++++++++..++.++..   +||+|+++++.|++.+..+....+..|+++++++. 
T Consensus        43 ~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  122 (373)
T cd06453          43 DAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD  122 (373)
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecC
Confidence            44567889999999975   455566667999999999887   89999999999998665554555567888888753 


Q ss_pred             ----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECCcc
Q 012296          283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK  357 (466)
Q Consensus       283 ----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~sK  357 (466)
                          .|+++++++++++ +++|++++|+||+|.+.|+++|.++|+++|++|++|++++.+.. .....+|+|+++.|++|
T Consensus       123 ~~~~~d~~~l~~~l~~~-~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K  201 (373)
T cd06453         123 DDGQLDLEALEKLLTER-TKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHK  201 (373)
T ss_pred             CCCCcCHHHHHHHhcCC-ceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEecccc
Confidence                3799999999874 99999999999999999999999999999999999999875543 23335689999999999


Q ss_pred             ccCccccceeEEEEeCHHHHHHHHHHHHH--------------------h-CCCchHHHHHHHHHhhHH-----HHHHHH
Q 012296          358 FIGGHNDVLAGSISGSGKLVTQIRNLHHV--------------------L-GGALNPNAAYLIIRGMKT-----LHLRVQ  411 (466)
Q Consensus       358 ~lgg~gdv~gG~ivg~~eli~~l~~~~~~--------------------~-G~~lsp~~a~l~l~~L~t-----l~~R~~  411 (466)
                      ++++++   +|+++++++++++++.....                    + .++.+......+...++.     ++.+.+
T Consensus       202 ~~~~~g---~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~  278 (373)
T cd06453         202 MLGPTG---IGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAA  278 (373)
T ss_pred             ccCCCC---cEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            999854   68999999888776543210                    0 011221122111222322     344556


Q ss_pred             HHHHHHHHHHHHHHcCCCeEEE
Q 012296          412 QQNSTALRMAKILEAHPKVKRV  433 (466)
Q Consensus       412 ~~~~na~~La~~L~~~p~V~~V  433 (466)
                      +..+.++.+.+.|+++|+++.+
T Consensus       279 ~~~~~~~~l~~~l~~~~~~~~~  300 (373)
T cd06453         279 HEHELTAYALERLSEIPGVRVY  300 (373)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEe
Confidence            6678888999999998876543

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK07179 hypothetical protein; Provisional

Probab=99.88  E-value=5.3e-21  Score=199.73  Aligned_cols=212  Identities=15%  Similarity=0.175  Sum_probs=165.5

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHH
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~  287 (466)
                      +.+...+||+.||+++|.+.++++++|++|+.+++.++..+||+|+++...|.+....    +...|+++..++..|+++
T Consensus        97 ~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~----~~~~g~~~~~~~~~d~~~  172 (407)
T PRK07179         97 DDSPKPQFEKKLAAFTGFESCLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEG----VRAAGAQAHPFRHNDVDH  172 (407)
T ss_pred             CchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCCCCEEEEECCcCHHHHHH----HHHCCCeEEEecCCCHHH
Confidence            3467889999999999999999999999999999999999999999998888776533    334577777777789999


Q ss_pred             HHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-------cccc--ccCCcEEEECCccc
Q 012296          288 LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-------QKAL--SLGADLVLHSATKF  358 (466)
Q Consensus       288 Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-------~~~l--~~gaDivv~S~sK~  358 (466)
                      |+++++++++++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+..       ....  ..++|+++.|++|+
T Consensus       173 l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~  252 (407)
T PRK07179        173 LRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKA  252 (407)
T ss_pred             HHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHh
Confidence            99999764478999999999999999999999999999999999999864321       1111  12469999999999


Q ss_pred             cCccccceeEEEEeCHHHHHHHHHHHH--HhCCCchHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          359 IGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLI---IRGMKTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       359 lgg~gdv~gG~ivg~~eli~~l~~~~~--~~G~~lsp~~a~l~---l~~L~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      +++.    +|++++++++++.++....  .++++..+..+..+   ++.++....++++..++++.+.+.|++.
T Consensus       253 ~g~~----~G~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~  322 (407)
T PRK07179        253 FAGR----AGIITCPRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSEL  322 (407)
T ss_pred             hhcc----CeEEEeCHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            9863    6899999988877765432  24455444433322   3333444456778889999999999876

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.88  E-value=6e-21  Score=198.82  Aligned_cols=212  Identities=12%  Similarity=0.109  Sum_probs=155.4

Q ss_pred             hhHHHHHHHHHhhhC----C---C-cEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          210 PTTVVVEEKMSALEG----A---E-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       210 p~~~~Lee~LA~l~g----~---e-~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      +....|++.|+++++    .   . +.+++++|+ +++..++.+++++||+|++++|+|+.....    +...|+++..+
T Consensus        69 ~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~----~~~~G~~~~~v  144 (399)
T PRK07681         69 SGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETG----IQMAGATSYYM  144 (399)
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHH----HHhcCCEEEEE
Confidence            344567777777653    2   2 567777776 899999999999999999999999886533    44567777666


Q ss_pred             CC-------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----c-c-
Q 012296          281 DP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A-L-  344 (466)
Q Consensus       281 d~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----~-l-  344 (466)
                      +.       .|++++++++.++ +++|++++|+||||.+++   +++|+++|+++|++||+|++|.......    . . 
T Consensus       145 ~~~~~~~~~~d~~~l~~~~~~~-~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~  223 (399)
T PRK07681        145 PLKKENDFLPDLELIPEEIADK-AKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLS  223 (399)
T ss_pred             ecCCCCCCcCCHHHHHHhcccc-ceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhh
Confidence            42       2688898888764 899999999999999997   6788889999999999999987432211    1 1 


Q ss_pred             ---ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHH
Q 012296          345 ---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTA  417 (466)
Q Consensus       345 ---~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~na  417 (466)
                         .....|++.|+||.++.+| .+.||+++++++++++...+...+...+.....++...+    +.+....+...+++
T Consensus       224 ~~~~~~~~i~~~S~SK~~~~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  302 (399)
T PRK07681        224 VPGAKEVGVEINSLSKSYSLAG-SRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERR  302 (399)
T ss_pred             CCCCcccEEEEeecccccCCcc-ceeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence               1124588999999998777 468999999999999887765544444443333333322    34455555667788


Q ss_pred             HHHHHHHHcC
Q 012296          418 LRMAKILEAH  427 (466)
Q Consensus       418 ~~La~~L~~~  427 (466)
                      +.+.+.|+++
T Consensus       303 ~~l~~~L~~~  312 (399)
T PRK07681        303 DTLVDGFRTF  312 (399)
T ss_pred             HHHHHHHHHC
Confidence            8888999876

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.88  E-value=8.5e-21  Score=196.50  Aligned_cols=212  Identities=19%  Similarity=0.167  Sum_probs=160.5

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHH
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~L  288 (466)
                      .+...+||+.+|+++|.++++++++|++|+..++.+++++||+|+++++.|++....+. .   .+.....+...|++++
T Consensus        82 ~~~~~~le~~ia~~~g~~~~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~-~---~~~~~~~~~~~d~~~l  157 (393)
T TIGR01822        82 QDIHKELEAKIAAFLGTEDTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGVR-L---CKAKRYRYANNDMADL  157 (393)
T ss_pred             hHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHH-h---cCCceEEeCCCCHHHH
Confidence            56678999999999999999999999999999999999999999999999998665442 2   2333333456789999


Q ss_pred             HHhhcCC-----CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-c------cc--ccCCcEEEEC
Q 012296          289 EAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-K------AL--SLGADLVLHS  354 (466)
Q Consensus       289 e~ai~~~-----~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~-~------~l--~~gaDivv~S  354 (466)
                      ++++++.     ++++|++++++||+|.+.|+++|+++|++||++||+|++|+.+... .      ..  ..++|+++.|
T Consensus       158 ~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s  237 (393)
T TIGR01822       158 EAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGT  237 (393)
T ss_pred             HHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEE
Confidence            9888741     4889999999999999999999999999999999999998644321 0      11  2257899999


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHcC
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--~~G~~lsp~~a~l~l~~L~t---l~~R~~~~~~na~~La~~L~~~  427 (466)
                      +||+++|.   ++|++++++++++.++....  .++++.++.....++..++.   .+...++..++++.+.+.|++.
T Consensus       238 ~sK~l~g~---r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  312 (393)
T TIGR01822       238 LGKALGGA---SGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAA  312 (393)
T ss_pred             ChHHhhCC---CcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            99999864   47999999999988876422  23333344433333333333   2345566778888888888764

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.88  E-value=7.6e-21  Score=199.25  Aligned_cols=215  Identities=16%  Similarity=0.177  Sum_probs=157.3

Q ss_pred             CCchhHHHHHHHHHhhh----C---C--CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCce
Q 012296          207 YGNPTTVVVEEKMSALE----G---A--ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~----g---~--e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~  276 (466)
                      |+......|++.+++++    |   .  ++.|++++|+ +++..++.+++++||+|++++|.|......    ++..|.+
T Consensus        78 Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~----~~~~g~~  153 (410)
T PRK06290         78 YADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTH----TKYYGGE  153 (410)
T ss_pred             CCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHHH----HHHcCCE
Confidence            33345567888888774    3   2  2368888887 899999999999999999999999886543    3446777


Q ss_pred             EEEeCC-------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-c--c
Q 012296          277 ATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-K--A  343 (466)
Q Consensus       277 v~~vd~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-~--~  343 (466)
                      +..++.       .|++++++++.+ ++++|++++|+||||.+++   +++|.++|+++|++||+||+|...... .  .
T Consensus       154 v~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s  232 (410)
T PRK06290        154 VYNLPLLEENNFLPDLDSIPKDIKE-KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLS  232 (410)
T ss_pred             EEEEecCCCcCCcCCHHHHHHhhcc-cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcC
Confidence            666542       268888888876 4899999999999999998   577888899999999999998753221 1  1


Q ss_pred             -c----ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHH---HHHHHHHhhHHHHHHHHHHHH
Q 012296          344 -L----SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN---AAYLIIRGMKTLHLRVQQQNS  415 (466)
Q Consensus       344 -l----~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~---~a~l~l~~L~tl~~R~~~~~~  415 (466)
                       .    ..+.+|++.|+||.++.+| .+.||+++++++++.+...+.....+.+..   .+..++...+.+....++..+
T Consensus       233 ~~~~~~~~~~~I~i~SfSK~~g~~G-lRiG~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~  311 (410)
T PRK06290        233 FLSVPGAKEVGVEIHSLSKAYNMTG-WRLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSR  311 (410)
T ss_pred             hhcCCCccccEEEEeechhhcCCch-hheEeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence             1    1235699999999998887 458999999999998887765544333222   222223222345555666778


Q ss_pred             HHHHHHHHHHcC
Q 012296          416 TALRMAKILEAH  427 (466)
Q Consensus       416 na~~La~~L~~~  427 (466)
                      +++.+.+.|+++
T Consensus       312 ~~~~l~~~L~~~  323 (410)
T PRK06290        312 RLDKLVKILNEV  323 (410)
T ss_pred             HHHHHHHHHHhC
Confidence            888899999876

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.88  E-value=4e-21  Score=194.76  Aligned_cols=220  Identities=19%  Similarity=0.236  Sum_probs=164.1

Q ss_pred             ccccC-CCc-hhHHHHHHHHHhhhCC----CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCC
Q 012296          202 FEYGR-YGN-PTTVVVEEKMSALEGA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG  274 (466)
Q Consensus       202 ~~Y~R-~~n-p~~~~Lee~LA~l~g~----e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~G  274 (466)
                      +.|+| |+- +.+..|.+++++++|.    ++.|++|.|. +++..++++++.+||+|++.+|.|..+....    ...|
T Consensus        63 ~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~----~maG  138 (420)
T KOG0257|consen   63 NQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQV----VMAG  138 (420)
T ss_pred             ccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhHH----hhcC
Confidence            44555 344 4567788888887765    5667777777 9999999999999999999999999866433    3345


Q ss_pred             ceEEEeC-------------CCCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCC
Q 012296          275 ITATVID-------------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP  338 (466)
Q Consensus       275 i~v~~vd-------------~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~  338 (466)
                      .+.+++.             ..|.++++.+++++ ||+|++++||||||.+.+   |++|+++|++||+++|.||+|.-.
T Consensus       139 ~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~k-Tk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~  217 (420)
T KOG0257|consen  139 GTPVFVPLKPKEGNVSSSDWTLDPEELESKITEK-TKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWL  217 (420)
T ss_pred             CcceeeccccccccccCccccCChHHHHhhccCC-ccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHH
Confidence            5544443             23899999999985 999999999999999985   889999999999999999997532


Q ss_pred             Ccc---------cccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhC-CCchHHH-HHHH-H-Hh---
Q 012296          339 LNQ---------KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG-GALNPNA-AYLI-I-RG---  402 (466)
Q Consensus       339 ~~~---------~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G-~~lsp~~-a~l~-l-~~---  402 (466)
                      +..         .|..+...+-+.|++|+++..|+. .||+++++.++..++..+.... .+..|.. |.+. . ..   
T Consensus       218 v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWr-lGW~igp~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~  296 (420)
T KOG0257|consen  218 VYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWR-LGWAIGPKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELAC  296 (420)
T ss_pred             hhCCCcceeeecCCchhheEEEeccccceeeeeeee-eeeeechHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhc
Confidence            221         122334568999999999999975 7999998888888877665443 2223321 1111 1 11   


Q ss_pred             -----hHHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          403 -----MKTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       403 -----L~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                           ......+.+.+.++++.|++.|.+.
T Consensus       297 ~~p~~~y~~~~~~~~y~~krdil~k~L~~l  326 (420)
T KOG0257|consen  297 LQPGGSYFITELVKEYKEKRDILAKALEEL  326 (420)
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence                 2444557778899999999999987

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.88  E-value=1.5e-20  Score=194.52  Aligned_cols=210  Identities=15%  Similarity=0.200  Sum_probs=152.5

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          212 TVVVEEKMSALE----GA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~----e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ...|++.+++++    |.    ++.+++++|+ +++..++..++++||+|++++|+|+.....    ++..|+++..++.
T Consensus        69 ~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~----~~~~G~~v~~v~~  144 (383)
T TIGR03540        69 MLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIG----TLFAGGEPYEMPL  144 (383)
T ss_pred             CHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHHH----HHhcCCEEEEEec
Confidence            456777777654    33    2356676665 999999999999999999999999885533    3456777665542


Q ss_pred             -------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----c--ccc
Q 012296          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----K--ALS  345 (466)
Q Consensus       283 -------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----~--~l~  345 (466)
                             .|++++++++.++ +++|++++|+||||.+++   +++|+++|+++|+++|+|++|......     .  .+.
T Consensus       145 ~~~~g~~~d~~~l~~~~~~~-~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~  223 (383)
T TIGR03540       145 KEENGFLPDFDAIPEDIAKK-AKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVD  223 (383)
T ss_pred             CcccCCccCHHHHHhhcccc-ceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCC
Confidence                   2688998888764 999999999999999998   688899999999999999998643211     1  111


Q ss_pred             --cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHh----hHHHHHHHHHHHHHHHH
Q 012296          346 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG----MKTLHLRVQQQNSTALR  419 (466)
Q Consensus       346 --~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~----L~tl~~R~~~~~~na~~  419 (466)
                        ....+++.|+||.||.+| ++.||+++++++++++.......+...+......+...    .+.++...+...++++.
T Consensus       224 ~~~~~~i~~~SfSK~~g~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  302 (383)
T TIGR03540       224 GAKDVGIEFHSLSKTYNMTG-WRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDL  302 (383)
T ss_pred             CcccCEEEEEecccccCCcc-ceeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence              124588899999998777 46899999999999888766544433333222222222    24455556667788889


Q ss_pred             HHHHHHcC
Q 012296          420 MAKILEAH  427 (466)
Q Consensus       420 La~~L~~~  427 (466)
                      +.+.|+++
T Consensus       303 ~~~~L~~~  310 (383)
T TIGR03540       303 LLEALKKI  310 (383)
T ss_pred             HHHHHHhC
Confidence            99999876

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.87  E-value=9e-21  Score=191.70  Aligned_cols=218  Identities=22%  Similarity=0.227  Sum_probs=164.7

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC----C
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----A  283 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----~  283 (466)
                      +.+..+++++.+++++|.++.+++++|++++..++.+++++||+|+++++.|...+... ......|+++..++.    .
T Consensus        30 ~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~  108 (338)
T cd06502          30 EDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAG-APEFLSGVKLLPVPGENGKL  108 (338)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhcCCCCeEEEecCcceeeecCC-cHHHHcCceEEeecCCCCcC
Confidence            56889999999999999778888999999999999999999999999999997643211 112235777777754    4


Q ss_pred             CHHHHHHhhcC------CCceEEEEeCCCCCCcc--cccHHHHHHHHHhcCCEEEEeCCCCC------CCcccccccCCc
Q 012296          284 DMEGLEAALNN------NNVSLFFTESPTNPFLR--CVDVKLVSDLCHKKGAIVCIDGTFAT------PLNQKALSLGAD  349 (466)
Q Consensus       284 Dle~Le~ai~~------~~tklV~lesP~NPtG~--v~dl~~Ia~la~~~gillIvDea~a~------~~~~~~l~~gaD  349 (466)
                      |+++|++++++      .++++|++++|+||.|.  ..++++|+++|+++|+++|+|++|..      +........++|
T Consensus       109 d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d  188 (338)
T cd06502         109 TPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVD  188 (338)
T ss_pred             CHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCC
Confidence            78999999874      14899999999998442  34678899999999999999998531      111122234789


Q ss_pred             EEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCC--chHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHH
Q 012296          350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA--LNPNAAYLIIRGMKT--LHLRVQQQNSTALRMAKILE  425 (466)
Q Consensus       350 ivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~--lsp~~a~l~l~~L~t--l~~R~~~~~~na~~La~~L~  425 (466)
                      +++.|+||++++++   |++++++++++++++.....++..  .++..+..++..|+.  ...++++..++++++.+.|+
T Consensus       189 ~~~~s~sK~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~  265 (338)
T cd06502         189 SVSFCLSKGGGAPV---GAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALE  265 (338)
T ss_pred             EEEEeccccCCCcc---ceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999875   566778999999888776555432  344555555555544  45566788888999999998


Q ss_pred             cCCC
Q 012296          426 AHPK  429 (466)
Q Consensus       426 ~~p~  429 (466)
                      +++.
T Consensus       266 ~~~~  269 (338)
T cd06502         266 ELGG  269 (338)
T ss_pred             hcCC
Confidence            8653

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.87  E-value=1.5e-20  Score=196.23  Aligned_cols=219  Identities=16%  Similarity=0.182  Sum_probs=160.1

Q ss_pred             chhHHHHHHHHHhhhCC--CcEEEeCCH-HHHHHHHHHH----HccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          209 NPTTVVVEEKMSALEGA--ESTVIMASG-MSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~--e~~l~~sSG-s~Ai~~al~a----ll~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ....+++++.+|+++|+  ++.+++++| ++++..++.+    ++++||+|+++++.|++....+....+..|++++.++
T Consensus        66 ~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~  145 (406)
T PRK09295         66 TEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIP  145 (406)
T ss_pred             HHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEe
Confidence            45577899999999986  345555555 5898888876    4688999999999999876656555667788888875


Q ss_pred             C-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECC
Q 012296          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSA  355 (466)
Q Consensus       282 ~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~  355 (466)
                      .     .|+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|+++++|++++.+.. .+...+++|+++.|+
T Consensus       146 ~~~~~~~d~~~l~~~i~~~-t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~  224 (406)
T PRK09295        146 LNPDGTLQLETLPALFDER-TRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSG  224 (406)
T ss_pred             cCCCCCCCHHHHHHhcCCC-cEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeeh
Confidence            3     3789999999875 99999999999999999999999999999999999999876533 333456899999999


Q ss_pred             ccccCccccceeEEEEeCHHHHHHHHHHH----------------------HHhCCCchHHHHHHHHHhhHHH-----HH
Q 012296          356 TKFIGGHNDVLAGSISGSGKLVTQIRNLH----------------------HVLGGALNPNAAYLIIRGMKTL-----HL  408 (466)
Q Consensus       356 sK~lgg~gdv~gG~ivg~~eli~~l~~~~----------------------~~~G~~lsp~~a~l~l~~L~tl-----~~  408 (466)
                      ||.+|++|   .|+++.++++++.+....                      +...++.+....+.+..+++.+     +.
T Consensus       225 ~K~~gp~G---~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~  301 (406)
T PRK09295        225 HKLYGPTG---IGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNN  301 (406)
T ss_pred             hhccCCCC---cEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHH
Confidence            99877665   589988888776543110                      0011223322222222233322     22


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCeE
Q 012296          409 RVQQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       409 R~~~~~~na~~La~~L~~~p~V~  431 (466)
                      ..++..+.++++.+.|++.++++
T Consensus       302 i~~~~~~l~~~l~~~l~~~~~~~  324 (406)
T PRK09295        302 IAEYEQNLMHYALSQLESVPDLT  324 (406)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEE
Confidence            33455667788888888888774

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.87  E-value=3.8e-21  Score=186.86  Aligned_cols=252  Identities=19%  Similarity=0.279  Sum_probs=198.5

Q ss_pred             cccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc-CCCEEEEcC
Q 012296          178 VNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-AGGHIVTTT  256 (466)
Q Consensus       178 ~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~-~Gd~Vlv~~  256 (466)
                      ++|+|++.|+.++..++.+...+...|+  .+|+..+||+.+|+++|.|.+++++||+.++.++++..+. +|.+||+.+
T Consensus        26 LRSDTvT~PTdeMr~am~eA~vgDdVyG--eD~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~~rg~eii~gd  103 (384)
T KOG1368|consen   26 LRSDTVTVPTDEMRRAMAEASVGDDVYG--EDPTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCHQRGSEIIVGD  103 (384)
T ss_pred             cccccccCChHHHHHHHhhcccCccccc--CCccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhcCCCceEEecc
Confidence            6788999999999999888888888899  4899999999999999999999999999999999988775 899999998


Q ss_pred             CCCcchHHHHHhhcccCCceEEEeC-----CCCHHHHHHhhcCC-------CceEEEEeCCCCCCc-ccccHH---HHHH
Q 012296          257 DCYRKTRIFIETVLPKMGITATVID-----PADMEGLEAALNNN-------NVSLFFTESPTNPFL-RCVDVK---LVSD  320 (466)
Q Consensus       257 ~~y~~t~~~~~~~l~~~Gi~v~~vd-----~~Dle~Le~ai~~~-------~tklV~lesP~NPtG-~v~dl~---~Ia~  320 (466)
                      ..|--.++.- .+....|+.+..+.     ..++++|++++...       .|++|.+|+.+|.+| .++|++   +|.+
T Consensus       104 ~~HI~~~E~g-g~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~  182 (384)
T KOG1368|consen  104 RAHIHRYEQG-GISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKA  182 (384)
T ss_pred             chheeehhcc-ChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHH
Confidence            8876544221 11222355555553     23799999999733       389999999998776 888865   6788


Q ss_pred             HHHhcCCEEEEeCC--C----CCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchH-
Q 012296          321 LCHKKGAIVCIDGT--F----ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP-  393 (466)
Q Consensus       321 la~~~gillIvDea--~----a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp-  393 (466)
                      +|+++|+.|++|++  |    +.+...+-+..-+|-|...+||.+|.|   +|.+++|+++++++.+.++..+|+.+-. 
T Consensus       183 lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAP---VGSViVG~k~FI~kA~~~RKalGGGmRQs  259 (384)
T KOG1368|consen  183 LAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAP---VGSVIVGSKDFIDKARHFRKALGGGMRQS  259 (384)
T ss_pred             HHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCC---cccEEEccHHHHHHHHHHHHHhcCchhHH
Confidence            89999999999998  2    223333333334788888999999998   5889999999999999999999988744 


Q ss_pred             -HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Q 012296          394 -NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYP  436 (466)
Q Consensus       394 -~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yP  436 (466)
                       ..|.+++-.+..-...+++..+.++.|++++++.+.|. +.-|
T Consensus       260 GvLaaaaLval~~~~~~L~~dHk~A~~lAe~~~~~~~i~-v~v~  302 (384)
T KOG1368|consen  260 GVLAAAALVALDENVPLLRADHKRAKELAEYINTPEEIR-VEVP  302 (384)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcccccee-eecc
Confidence             34445555666555577888899999999999877663 5445

>PRK12414 putative aminotransferase; Provisional

Probab=99.87  E-value=6.5e-20  Score=190.20  Aligned_cols=212  Identities=15%  Similarity=0.187  Sum_probs=151.1

Q ss_pred             hhHHHHHHHHHhhhCCC-----cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC--
Q 012296          210 PTTVVVEEKMSALEGAE-----STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e-----~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--  282 (466)
                      +.++.+++.+++++|..     +.+++++|++++..++.+++.+||+|++++|+|......+    ...|.++..++.  
T Consensus        70 ~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~  145 (384)
T PRK12414         70 ALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIV----RLQGATPVAIKLSP  145 (384)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHH----HHcCCEEEEEecCc
Confidence            44556666666667752     3555566669999999999999999999999998755433    335666655542  


Q ss_pred             ----CCHHHHHHhhcCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCcc----cccc-----c
Q 012296          283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ----KALS-----L  346 (466)
Q Consensus       283 ----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~---dl~~Ia~la~~~gillIvDea~a~~~~~----~~l~-----~  346 (466)
                          .|+++|+++++++ +++|++++|+||||.++   ++++|+++|+++|+++|+|++|......    .++.     .
T Consensus       146 ~~~~~d~~~l~~~l~~~-~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~  224 (384)
T PRK12414        146 EDFRVNWDEVAAAITPR-TRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELA  224 (384)
T ss_pred             cccccCHHHHHhhcCcc-cEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCcc
Confidence                3789999999764 99999999999999987   4778899999999999999998643221    1111     1


Q ss_pred             CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH
Q 012296          347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKI  423 (466)
Q Consensus       347 gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~---tl~~R~~~~~~na~~La~~  423 (466)
                      +..+++.|+||.++.+| .+.||+++++++++.+...........+....+++...++   ......+...++++.+.+.
T Consensus       225 ~~~i~~~SfSK~~~~pG-lRiG~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~  303 (384)
T PRK12414        225 ERSVIVSSFGKSYHVTG-WRVGYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARE  303 (384)
T ss_pred             CcEEEEecccccccCcc-ceEEEEecCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence            23589999999998777 4689999999999988877654333333333333333332   2222344567788888899


Q ss_pred             HHcC
Q 012296          424 LEAH  427 (466)
Q Consensus       424 L~~~  427 (466)
                      |+++
T Consensus       304 L~~~  307 (384)
T PRK12414        304 LAGS  307 (384)
T ss_pred             HHhC
Confidence            9876

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=4e-21  Score=197.05  Aligned_cols=223  Identities=17%  Similarity=0.234  Sum_probs=164.8

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCC-CEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~G-d~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      .++|+++...+|++.+++.+|. .+.|++++|+ +++..++.+++++| |+|+++.|+|....    ..++..|+++..+
T Consensus        51 ~~~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~----~~~~~~G~~~~~v  126 (351)
T PRK01688         51 LNRYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS----VSAETIGVEIRTV  126 (351)
T ss_pred             cccCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHH----HHHHHcCCEEEEe
Confidence            6778888889999999999997 4566677776 89999999999887 89999999998644    3345567777766


Q ss_pred             CC-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHh--cCCEEEEeCCCCCCCccc-c----cccCC
Q 012296          281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQK-A----LSLGA  348 (466)
Q Consensus       281 d~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~--~gillIvDea~a~~~~~~-~----l~~ga  348 (466)
                      +.     .|++++++++ + ++++|++++|+||||.+.+.++|.++++.  .++++|+||+|....... .    ...+.
T Consensus       127 ~~~~~~~~d~~~l~~~~-~-~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n  204 (351)
T PRK01688        127 PTLDNWQLDLPAIADNL-D-GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPH  204 (351)
T ss_pred             ecCCCCCCCHHHHHHhc-c-CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCC
Confidence            43     3688998888 3 48999999999999999987777777653  268999999986543211 1    12335


Q ss_pred             cEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCc-hHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL-NPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILE  425 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~l-sp~~a~l~l~--~L~tl~~R~~~~~~na~~La~~L~  425 (466)
                      -+++.|+||.||.+| ++.|++++++++++.+++.+..++... ....+..++.  +.+.+..+++...++++++.+.|+
T Consensus       205 ~iv~rSfSK~~glaG-lRiGy~i~~~~~i~~l~~~~~~~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~  283 (351)
T PRK01688        205 LVILRTLSKAFALAG-LRCGFTLANEEVINLLLKVIAPYPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALK  283 (351)
T ss_pred             EEEEecchHhhcCHH-HHHhHHhCCHHHHHHHHhccCCCCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999777 457999999999998887655443221 1112222222  234566677777888999999999


Q ss_pred             cCCCeEEE
Q 012296          426 AHPKVKRV  433 (466)
Q Consensus       426 ~~p~V~~V  433 (466)
                      +++++..+
T Consensus       284 ~~~~~~~~  291 (351)
T PRK01688        284 EIPCVEQV  291 (351)
T ss_pred             hCCCCCeE
Confidence            88776444

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=1e-20  Score=196.11  Aligned_cols=218  Identities=14%  Similarity=0.158  Sum_probs=162.8

Q ss_pred             cCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      .+|+++...+|++.|+++++. .+.|++++|+ +++..++.+++++||+|++++|.|+...    ...+..|+++..++.
T Consensus        81 ~~Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~----~~~~~~g~~~~~v~~  156 (380)
T PLN03026         81 YVYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYV----FDAAVNGAEVIKVPR  156 (380)
T ss_pred             ccCCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHH----HHHHHcCCEEEEeec
Confidence            456677788999999999987 3567777777 8999999899999999999999997533    233456887776643


Q ss_pred             -----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc----ccc-ccCCcEEE
Q 012296          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL-SLGADLVL  352 (466)
Q Consensus       283 -----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~----~~l-~~gaDivv  352 (466)
                           .|+++|+++++..++++|++++|+||||.+.+.+++.++++.. +++|+||+|......    ... .....+++
T Consensus       157 ~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~  235 (380)
T PLN03026        157 TPDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVL  235 (380)
T ss_pred             CCCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEE
Confidence                 3689999988333599999999999999999999999999865 999999998643221    111 23456899


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAHPK  429 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~L~~~p~  429 (466)
                      .|+||.+|.+| .+.||+++++++++.+++.+..++  .+.....++...+   +.+....+...++++.+.+.|++++.
T Consensus       236 ~SfSK~~glaG-lRiGy~~~~~~~i~~l~~~~~~~~--~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~~  312 (380)
T PLN03026        236 RTFSKRAGLAG-LRVGYGAFPLSIIEYLWRAKQPYN--VSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVPF  312 (380)
T ss_pred             ecchHhhcCcc-ccceeeecCHHHHHHHHHhcCCCC--CCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            99999999887 458999999999998887665433  3333333333333   34444556667788889999998765


Q ss_pred             e
Q 012296          430 V  430 (466)
Q Consensus       430 V  430 (466)
                      +
T Consensus       313 ~  313 (380)
T PLN03026        313 L  313 (380)
T ss_pred             C
Confidence            4

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.87  E-value=8.6e-21  Score=195.80  Aligned_cols=221  Identities=19%  Similarity=0.182  Sum_probs=161.3

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCC---------------EEEEcCCCCcchHHHHHhhccc
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGG---------------HIVTTTDCYRKTRIFIETVLPK  272 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd---------------~Vlv~~~~y~~t~~~~~~~l~~  272 (466)
                      ..+..+++++.+++++|.++++++++|++|+.+++.+++++||               +||++.+.|......+...+..
T Consensus        43 ~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~  122 (363)
T TIGR01437        43 IKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRL  122 (363)
T ss_pred             HHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHh
Confidence            4577899999999999999899999999999999999999998               8888886554321111233455


Q ss_pred             CCceEEEeCC---CCHHHHHHhhcCCCceEEE-EeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCC
Q 012296          273 MGITATVIDP---ADMEGLEAALNNNNVSLFF-TESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA  348 (466)
Q Consensus       273 ~Gi~v~~vd~---~Dle~Le~ai~~~~tklV~-lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~ga  348 (466)
                      .|.++++++.   .|+++++++|+++ |++++ +++|+||+|.+.|+++|+++||++|+++|+|+++.... .....+|+
T Consensus       123 ~g~~~v~v~~~~~~d~~~le~ai~~~-t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~-~~~~~~g~  200 (363)
T TIGR01437       123 GGGKVVEAGYANECSAEQLEAAITEK-TAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL-QKYYRLGA  200 (363)
T ss_pred             cCCeEEEEcCCCCCCHHHHHHhcChh-ceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch-HHHHHcCC
Confidence            6777777753   4899999999885 88655 68889999999999999999999999999999987322 23345689


Q ss_pred             cEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL-----NPNAAYLIIRGM-KTLHLRVQQQNSTALRMAK  422 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~l-----sp~~a~l~l~~L-~tl~~R~~~~~~na~~La~  422 (466)
                      |++++|+||+++|+.   +|++++++++++.++......+..+     +-.....++..+ +....+++++.++++.+.+
T Consensus       201 D~~~~S~~K~l~gp~---~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~  277 (363)
T TIGR01437       201 DLVIYSGAKAIEGPT---SGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIE  277 (363)
T ss_pred             CEEEEeCCcccCCCc---eEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHH
Confidence            999999999998773   7999999888887654332211111     111111112111 1122345556677888999


Q ss_pred             HHHcCCCeEEE
Q 012296          423 ILEAHPKVKRV  433 (466)
Q Consensus       423 ~L~~~p~V~~V  433 (466)
                      .|++.|++...
T Consensus       278 ~L~~i~g~~~~  288 (363)
T TIGR01437       278 ALNTLKGVSAS  288 (363)
T ss_pred             HHhcCCCeEEE
Confidence            99999887644

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.87  E-value=3.2e-20  Score=192.97  Aligned_cols=218  Identities=16%  Similarity=0.181  Sum_probs=159.2

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEE-eCCHHHHHHHHHHHH----ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          210 PTTVVVEEKMSALEGAE--STVI-MASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e--~~l~-~sSGs~Ai~~al~al----l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ...+.+++.+++++|++  +.++ ++++++++.+++.++    +++||+||++++.|++....+...++..|+++++++.
T Consensus        60 ~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  139 (398)
T TIGR03392        60 ARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPI  139 (398)
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEec
Confidence            34677899999999973  4454 455559999999887    4789999999999998655555556778888888753


Q ss_pred             -----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEECCc
Q 012296          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSAT  356 (466)
Q Consensus       283 -----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S~s  356 (466)
                           .|+++++++++++ +++|++++|+||||.+.|+++|.++|+++|+++++|++++.+. ..+...+++|+++.|+|
T Consensus       140 ~~~~~~~~~~l~~~i~~~-t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~  218 (398)
T TIGR03392       140 GADLLPDIRQLPELLTPR-TRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGH  218 (398)
T ss_pred             CCCCCcCHHHHHHHhccC-ceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecc
Confidence                 3789999999875 9999999999999999999999999999999999999986542 23334567999999999


Q ss_pred             cccCccccceeEEEEeCHHHHHHHHHHH---------------------HHhCCCchHHHHHHHHHhhHHH-----HHHH
Q 012296          357 KFIGGHNDVLAGSISGSGKLVTQIRNLH---------------------HVLGGALNPNAAYLIIRGMKTL-----HLRV  410 (466)
Q Consensus       357 K~lgg~gdv~gG~ivg~~eli~~l~~~~---------------------~~~G~~lsp~~a~l~l~~L~tl-----~~R~  410 (466)
                      |.++++|   .|+++.++++++++..+.                     +.-.++.+......+..+++.+     ....
T Consensus       219 K~~gp~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~  295 (398)
T TIGR03392       219 KLYGPTG---IGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAE  295 (398)
T ss_pred             cccCCCc---eEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence            9887664   689999998877664221                     0001122221222222223222     2233


Q ss_pred             HHHHHHHHHHHHHHHcCCCeE
Q 012296          411 QQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       411 ~~~~~na~~La~~L~~~p~V~  431 (466)
                      ++..+.++++.+.|+++|++.
T Consensus       296 ~~~~~l~~~l~~~l~~l~g~~  316 (398)
T TIGR03392       296 AWSVSLADLAEERLAQLPGFR  316 (398)
T ss_pred             HHHHHHHHHHHHHHhcCCCeE
Confidence            455667888888998888765

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=1.4e-20  Score=193.91  Aligned_cols=223  Identities=20%  Similarity=0.252  Sum_probs=162.3

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCC-CEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~G-d~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      ..+|+++....|++.||++++. .+.|++++|+ +++.+++.+++.+| |+|++++|.|....    ...+..|+++..+
T Consensus        53 ~~~Y~~~~~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~----~~~~~~g~~~~~v  128 (364)
T PRK04781         53 TRRYPDPQPPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYA----VCARLQNAPLVEV  128 (364)
T ss_pred             hccCCCCCHHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH----HHHHHcCCEEEEE
Confidence            4667777788999999999987 3456677765 89999999999999 79999999887543    2234557777666


Q ss_pred             CC--------CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHh--cCCEEEEeCCCCCCCccc-c---c-c
Q 012296          281 DP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQK-A---L-S  345 (466)
Q Consensus       281 d~--------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~--~gillIvDea~a~~~~~~-~---l-~  345 (466)
                      +.        .|++++++.+...++++|++++|+||||.+.+.+++.++++.  +++++|+||+|....... .   . .
T Consensus       129 ~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~  208 (364)
T PRK04781        129 PLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLAR  208 (364)
T ss_pred             ecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhh
Confidence            43        156777555433358999999999999999998888888764  478999999987543211 1   1 1


Q ss_pred             cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHh-----hHHHHHHHHHHHHHHHHH
Q 012296          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG-----MKTLHLRVQQQNSTALRM  420 (466)
Q Consensus       346 ~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~-----L~tl~~R~~~~~~na~~L  420 (466)
                      ...-+++.|+||.|+.+| ++.||+++++++++.+++.+..++..  .....++...     ...+..++++..++++.+
T Consensus       209 ~~~vi~~~SfSK~~gl~G-lRvGy~v~~~~l~~~l~~~~~~~~~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l  285 (364)
T PRK04781        209 YDNLAVLRTLSKAHALAA-ARIGSLIANAELIAVLRRCQAPYPVP--TPCAALAEQALSAPALAVTARRVAEVRAERERL  285 (364)
T ss_pred             CCCEEEEecChhhccccc-ceeeeeeCCHHHHHHHHhccCCCCCC--HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            234589999999999777 46899999999999998876655432  2222222222     234555667778889999


Q ss_pred             HHHHHcCCCeEEE
Q 012296          421 AKILEAHPKVKRV  433 (466)
Q Consensus       421 a~~L~~~p~V~~V  433 (466)
                      .+.|++++++..+
T Consensus       286 ~~~L~~~~~~~~~  298 (364)
T PRK04781        286 HAALAQLPGVRRV  298 (364)
T ss_pred             HHHHHhCCCCCeE
Confidence            9999988776444

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.87  E-value=2.3e-20  Score=194.00  Aligned_cols=219  Identities=19%  Similarity=0.220  Sum_probs=160.5

Q ss_pred             chhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHH----ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          209 NPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e---~~l~~sSGs~Ai~~al~al----l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ....+++++.+++++|++   +.++++++++++.+++.++    +++||+|+++++.|++....+.......|++++.++
T Consensus        61 ~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~  140 (403)
T TIGR01979        61 TEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIP  140 (403)
T ss_pred             HHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEe
Confidence            345778999999999975   3444455558888888765    578999999999999876556555667788887775


Q ss_pred             C-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECC
Q 012296          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSA  355 (466)
Q Consensus       282 ~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~  355 (466)
                      .     .|+++++++++++ +++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+.. .+...+++|+++.|+
T Consensus       141 ~~~~~~~~~~~l~~~i~~~-~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~  219 (403)
T TIGR01979       141 LDDDGTLDLDDLEKLLTEK-TKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSG  219 (403)
T ss_pred             cCCCCCCCHHHHHHHhccC-CeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEec
Confidence            3     3789999999875 99999999999999999999999999999999999999876533 334456899999999


Q ss_pred             ccccCccccceeEEEEeCHHHHHHHHHHHH---------------------HhCCCchHHHHHHHHHhhHH-----HHHH
Q 012296          356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLIIRGMKT-----LHLR  409 (466)
Q Consensus       356 sK~lgg~gdv~gG~ivg~~eli~~l~~~~~---------------------~~G~~lsp~~a~l~l~~L~t-----l~~R  409 (466)
                      +|++|+.|   .|+++.++++++++.....                     ...++.+....+.+...++.     ++..
T Consensus       220 ~K~~gp~G---~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~  296 (403)
T TIGR01979       220 HKMYGPTG---IGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENI  296 (403)
T ss_pred             ccccCCCC---ceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHH
Confidence            99987654   6888888887776532100                     00112222222222222322     2334


Q ss_pred             HHHHHHHHHHHHHHHHcCCCeE
Q 012296          410 VQQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       410 ~~~~~~na~~La~~L~~~p~V~  431 (466)
                      .++..+.++.+.+.|+++++++
T Consensus       297 ~~~~~~l~~~l~~~l~~~~g~~  318 (403)
T TIGR01979       297 EAHEHELTAYALERLGEIPGLR  318 (403)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEE
Confidence            5666777888888898888774

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.87  E-value=5.7e-20  Score=184.79  Aligned_cols=254  Identities=19%  Similarity=0.184  Sum_probs=183.2

Q ss_pred             cCCccccCCCccCChHHHHHHHhc--ccCCccccCCCchhHHHHHHHHHhhhCC---CcEEEeCCHH-HHHHHHHHHHcc
Q 012296          174 TTPVVNTSAYFFKKTAELIDFKEK--RRASFEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGM-SASTVMLLALVP  247 (466)
Q Consensus       174 ~~Pi~~sst~~~~~~~~~~~~~~~--~~~~~~Y~R~~np~~~~Lee~LA~l~g~---e~~l~~sSGs-~Ai~~al~all~  247 (466)
                      .-|+..+. +.|+.+..+.+....  .++.|+|+...+...+++.++.++.++.   ++.++++.|. -++..+++.+.+
T Consensus        27 vlPmWVAD-MDf~~pp~i~~Al~~rvdhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~  105 (388)
T COG1168          27 VLPMWVAD-MDFPTPPEIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTK  105 (388)
T ss_pred             cceeeeec-ccCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCc
Confidence            34554443 456666544443322  3456888844555888999999998775   4556666555 999999999999


Q ss_pred             CCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC--------CCCHHHHHHhhcCCCceEEEEeCCCCCCcccc---cHH
Q 012296          248 AGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--------PADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVK  316 (466)
Q Consensus       248 ~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd--------~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~---dl~  316 (466)
                      +||.|++..|.|++.++.+    +..|.++...+        ..|.++||+++.+.+++++++||||||+|++.   +|.
T Consensus       106 ~gd~Vvi~tPvY~PF~~~i----~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~  181 (388)
T COG1168         106 PGDGVVIQTPVYPPFYNAI----KLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELR  181 (388)
T ss_pred             CCCeeEecCCCchHHHHHH----hhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHH
Confidence            9999999999999977554    33454444432        12899999999887689999999999999997   478


Q ss_pred             HHHHHHHhcCCEEEEeCCCCCCCccc-----cc---cc--CCcEEEECCccccCccccceeEEEEeCHHHHHHHHH-HHH
Q 012296          317 LVSDLCHKKGAIVCIDGTFATPLNQK-----AL---SL--GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-LHH  385 (466)
Q Consensus       317 ~Ia~la~~~gillIvDea~a~~~~~~-----~l---~~--gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~-~~~  385 (466)
                      +|.++|.+||++||.||.++......     ..   ..  ..-+.+.|.||+|+-+|...+-+|+.++++..+..+ +..
T Consensus       182 ~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~  261 (388)
T COG1168         182 KIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKR  261 (388)
T ss_pred             HHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHH
Confidence            89999999999999999977543211     11   11  234888899999999986666677788888665443 333


Q ss_pred             HhCCCchHHH--HH-HH-HHhhHHHHHHHHHHHHHHHHHHHHHHcC-CCeEE
Q 012296          386 VLGGALNPNA--AY-LI-IRGMKTLHLRVQQQNSTALRMAKILEAH-PKVKR  432 (466)
Q Consensus       386 ~~G~~lsp~~--a~-l~-l~~L~tl~~R~~~~~~na~~La~~L~~~-p~V~~  432 (466)
                      .....++.+.  |. .+ ..|-.+|...++.+..|.+.+.++|+++ |+|+.
T Consensus       262 ~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v  313 (388)
T COG1168         262 NGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKV  313 (388)
T ss_pred             hcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence            3334444432  22 11 3577889988999999999999999876 77753

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.87  E-value=1.5e-20  Score=191.07  Aligned_cols=215  Identities=18%  Similarity=0.245  Sum_probs=161.9

Q ss_pred             cccCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          203 EYGRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       203 ~Y~R~~np~~~~Lee~LA~l~g~e-~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      .|.+|+++...++++.+++++|.+ +.+++++|+ +++..++ .++.+| .|++.+|+|....    ..++..|+++..+
T Consensus        40 ~~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~-~~l~~g-~vl~~~p~y~~~~----~~~~~~g~~~~~~  113 (330)
T TIGR01140        40 AWARYPDPEYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLP-RLLAPG-RVLVLAPTYSEYA----RAWRAAGHEVVEL  113 (330)
T ss_pred             HHhhCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHH-HHhCCC-eEEEeCCCcHHHH----HHHHHcCCEEEEe
Confidence            467778877899999999999974 677788877 6776654 456778 6999999998754    3345678888887


Q ss_pred             CCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcccc-c----ccCCcEEE
Q 012296          281 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA-L----SLGADLVL  352 (466)
Q Consensus       281 d~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~~-l----~~gaDivv  352 (466)
                      +  |++++++.+++  +++|++++|+||||.+.+   +++|+++|+++|+++|+|++|........ .    ..+.++++
T Consensus       114 ~--d~~~l~~~~~~--~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~  189 (330)
T TIGR01140       114 P--DLDRLPAALEE--LDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVL  189 (330)
T ss_pred             C--CHHHHHhhccc--CCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEE
Confidence            7  89999999843  789999999999999998   66778888999999999999865433211 1    12467999


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHcCCC
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKILEAHPK  429 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~---tl~~R~~~~~~na~~La~~L~~~p~  429 (466)
                      .|+||+++.+| ++.|++++++++++++......++  .+.....++...++   ......++..++.+.+.+.|++++.
T Consensus       190 ~S~SK~~g~~G-~R~G~i~~~~~~~~~l~~~~~~~~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  266 (330)
T TIGR01140       190 RSLTKFFGLAG-LRLGFVVAHPALLARLREALGPWT--VNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGG  266 (330)
T ss_pred             EecchhhcCch-hhhhheeCCHHHHHHHHhcCCCCC--chHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999776 457999999999888877654332  33444444333333   2344456677888999999999875


Q ss_pred             e
Q 012296          430 V  430 (466)
Q Consensus       430 V  430 (466)
                      +
T Consensus       267 ~  267 (330)
T TIGR01140       267 L  267 (330)
T ss_pred             c
Confidence            4

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.87  E-value=6.2e-20  Score=188.65  Aligned_cols=220  Identities=16%  Similarity=0.205  Sum_probs=158.0

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC----
Q 012296          210 PTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e---~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----  282 (466)
                      +..+++++.+++++|.+   +.+++++|++++.+++.+++++||+|+++.+.|+++...+....+..|++++.++.    
T Consensus        44 ~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  123 (376)
T TIGR01977        44 REVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEG  123 (376)
T ss_pred             HHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCC
Confidence            66788999999999974   34555677799999999999999999999999988766555555666888877753    


Q ss_pred             -CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECCccccC
Q 012296          283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIG  360 (466)
Q Consensus       283 -~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~sK~lg  360 (466)
                       .|+++++++++++ +++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .+....|+|+++.|++|+++
T Consensus       124 ~~d~~~l~~~~~~~-~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~  202 (376)
T TIGR01977       124 LISPERIKRAIKTN-TKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLL  202 (376)
T ss_pred             CcCHHHHHHhcCCC-CeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEeccccccc
Confidence             3799999999774 99999999999999999999999999999999999999876533 34445789999999999998


Q ss_pred             ccccceeEEEEeCHHHHHHHHHH----------------HHHhCCCchHHHHHHHHHhhHHH-----HHHHHHHHHHHHH
Q 012296          361 GHNDVLAGSISGSGKLVTQIRNL----------------HHVLGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALR  419 (466)
Q Consensus       361 g~gdv~gG~ivg~~eli~~l~~~----------------~~~~G~~lsp~~a~l~l~~L~tl-----~~R~~~~~~na~~  419 (466)
                      ++.. .|++++.++..+..+...                .+...++.+....+.+...++.+     +...+++.+.++.
T Consensus       203 ~p~g-~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~  281 (376)
T TIGR01977       203 GPQG-TGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEK  281 (376)
T ss_pred             CCCC-ceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            8753 244555544322211100                00001122222222222233332     2345666788899


Q ss_pred             HHHHHHcCCCeE
Q 012296          420 MAKILEAHPKVK  431 (466)
Q Consensus       420 La~~L~~~p~V~  431 (466)
                      +.+.|++.++++
T Consensus       282 ~~~~l~~~~~~~  293 (376)
T TIGR01977       282 LLNGLREINKVK  293 (376)
T ss_pred             HHHHHhcCCCeE
Confidence            999999887764

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.87  E-value=4.5e-20  Score=190.21  Aligned_cols=213  Identities=17%  Similarity=0.196  Sum_probs=151.2

Q ss_pred             HHHHHHHHHhhhC--C--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-----
Q 012296          212 TVVVEEKMSALEG--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (466)
Q Consensus       212 ~~~Lee~LA~l~g--~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----  282 (466)
                      ++.+.+.+.+++|  .  ++.+++++|++++..++..++++||+|++++|+|.....    .+...|+++..++.     
T Consensus        67 r~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~  142 (382)
T PRK06108         67 REALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVA----APKILGARVVCVPLDFGGG  142 (382)
T ss_pred             HHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchHH----HHHHCCCEEEEeeCCCCCC
Confidence            3444444444446  2  344444555699999999999999999999999987553    34456777766643     


Q ss_pred             ---CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc------ccc---c-c
Q 012296          283 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ------KAL---S-L  346 (466)
Q Consensus       283 ---~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~------~~l---~-~  346 (466)
                         .|+++++++++++ +++|++++|+||||.+.+   +++|+++|+++|+++|+|++|......      ...   . .
T Consensus       143 ~~~~d~~~l~~~~~~~-~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~  221 (382)
T PRK06108        143 GWTLDLDRLLAAITPR-TRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPD  221 (382)
T ss_pred             CccCCHHHHHHhcCcc-ceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCc
Confidence               3689999988764 899999999999999885   678899999999999999997654321      001   1 1


Q ss_pred             CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHH
Q 012296          347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG----MKTLHLRVQQQNSTALRMAK  422 (466)
Q Consensus       347 gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~----L~tl~~R~~~~~~na~~La~  422 (466)
                      ...+++.|+||.++.+| .+.|++++++++++.+...........+.....++...    .+.++...++..++++.+.+
T Consensus       222 ~~~i~~~S~SK~~g~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~  300 (382)
T PRK06108        222 DRIIFVNSFSKNWAMTG-WRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVD  300 (382)
T ss_pred             CCEEEEeechhhccCcc-cceeeeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            34588999999998776 45799999999999887765433333344433333222    23345556667778888999


Q ss_pred             HHHcCCCe
Q 012296          423 ILEAHPKV  430 (466)
Q Consensus       423 ~L~~~p~V  430 (466)
                      .|++++++
T Consensus       301 ~L~~~~~~  308 (382)
T PRK06108        301 ALRALPGV  308 (382)
T ss_pred             HHHhCCCC
Confidence            99877654

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=2e-20  Score=191.74  Aligned_cols=219  Identities=18%  Similarity=0.276  Sum_probs=163.5

Q ss_pred             cCCCchhHHHHHHHHHhhhCCC--cEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          205 GRYGNPTTVVVEEKMSALEGAE--STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~e--~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      .+|+.+...+|++.+|++++..  +.+++++|+ +++..++.+++++||+|++++|.|....    ..++..|+++..++
T Consensus        58 ~~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~i~  133 (356)
T PRK04870         58 NRYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALACAKPGATVLAPEPGFVMYR----MSAKLAGLEFVGVP  133 (356)
T ss_pred             ccCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCHHHHH----HHHHHcCCEEEEec
Confidence            4444556789999999999863  367788887 7888888888999999999999998644    33556788877765


Q ss_pred             C-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc----ccccCCcEEE
Q 012296          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK----ALSLGADLVL  352 (466)
Q Consensus       282 ~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~----~l~~gaDivv  352 (466)
                      .     .|+++|+++++..++++|++++|+||||.+++.+++.++++..++++|+|++|.......    .......+++
T Consensus       134 ~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~  213 (356)
T PRK04870        134 LTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVM  213 (356)
T ss_pred             CCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEE
Confidence            3     378999999875458999999999999999999988888877788999999986432111    1122345899


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL---IIRGMKTLHLRVQQQNSTALRMAKILEAHPK  429 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l---~l~~L~tl~~R~~~~~~na~~La~~L~~~p~  429 (466)
                      .|+|| ++.+| .+.|+++++++++++++..+..+  ..+....++   ++...+.++..+++..++++.+.+.|+++++
T Consensus       214 ~S~SK-~~~~G-lRiG~~i~~~~~i~~~~~~~~~~--~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  289 (356)
T PRK04870        214 RTVSK-LGLAG-LRLGYLAGHPAWIAELDKVRPPY--NVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAALPG  289 (356)
T ss_pred             ecchh-hhhHH-HhhhhhhCCHHHHHHHHHccCCC--cCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999 77776 45799999999999887765322  233333322   2333345566667778889999999998877


Q ss_pred             eE
Q 012296          430 VK  431 (466)
Q Consensus       430 V~  431 (466)
                      +.
T Consensus       290 ~~  291 (356)
T PRK04870        290 VT  291 (356)
T ss_pred             cE
Confidence            63

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.87  E-value=6.8e-21  Score=194.27  Aligned_cols=234  Identities=17%  Similarity=0.195  Sum_probs=176.6

Q ss_pred             HHHHhcccCCccccCCCchhHHHHHHHHHhhhCC-C-cEEEeCCHHHHHHHHHHHH--c----cCCCEEEEcCCCCcchH
Q 012296          192 IDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGA-E-STVIMASGMSASTVMLLAL--V----PAGGHIVTTTDCYRKTR  263 (466)
Q Consensus       192 ~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~-e-~~l~~sSGs~Ai~~al~al--l----~~Gd~Vlv~~~~y~~t~  263 (466)
                      ...|+|+++.|.|||.....+++.|+.+|+++|+ + +.+++++|+++++++|...  .    +.|.|||++.-+|++..
T Consensus        26 ~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl  105 (386)
T COG1104          26 TEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVL  105 (386)
T ss_pred             HhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHH
Confidence            3456788889999999999999999999999998 3 4455555569999888863  2    25789999999999988


Q ss_pred             HHHHhhcccCCceEEEeCCC-----CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC
Q 012296          264 IFIETVLPKMGITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP  338 (466)
Q Consensus       264 ~~~~~~l~~~Gi~v~~vd~~-----Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~  338 (466)
                      ..++.. +..|++|+|++.+     |+++|+++|+++ |.+|.+...||.+|.++|+++|.++|+++|+++++|.+++.+
T Consensus       106 ~~~~~L-e~~g~~Vtyl~V~~~G~v~~e~L~~al~~~-T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~G  183 (386)
T COG1104         106 NTCRYL-ERQGFEVTYLPVDSNGLVDLEQLEEALRPD-TILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVG  183 (386)
T ss_pred             HHHHHH-HhcCCeEEEeCCCCCCeEcHHHHHHhcCCC-ceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcC
Confidence            888655 7789999998765     799999999986 999999999999999999999999999999999999998764


Q ss_pred             -CcccccccCCcEEEECCccccCccccceeEEEEeCHHHH-HHHH-H---HHHHhCCCc--hHHHH--HHHHHhhHHHHH
Q 012296          339 -LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV-TQIR-N---LHHVLGGAL--NPNAA--YLIIRGMKTLHL  408 (466)
Q Consensus       339 -~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli-~~l~-~---~~~~~G~~l--sp~~a--~l~l~~L~tl~~  408 (466)
                       ++.+...+++|++..|.||+.|+.|   .|+++.++... +.+. .   .+..-.++.  ....+  .++....+.++.
T Consensus       184 kipi~~~~~~vD~ls~SaHK~~GpkG---iGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~  260 (386)
T COG1104         184 KIPIDLEELGVDLLSFSAHKFGGPKG---IGALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEE  260 (386)
T ss_pred             ceeccccccCcceEEeehhhccCCCc---eEEEEECCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence             4566667789999999999998887   56666555322 1110 0   000001121  11211  122334556666


Q ss_pred             HHHHHHHHHHHHHHHHHcC-CCe
Q 012296          409 RVQQQNSTALRMAKILEAH-PKV  430 (466)
Q Consensus       409 R~~~~~~na~~La~~L~~~-p~V  430 (466)
                      ..++....++++.+.|.+. |.+
T Consensus       261 ~~~~~~~lr~~l~~~l~~~~p~~  283 (386)
T COG1104         261 ENARLRKLRDRLEDGLLEIIPDV  283 (386)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcE
Confidence            7777778888888888865 544

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.87  E-value=2.8e-20  Score=193.18  Aligned_cols=216  Identities=14%  Similarity=0.183  Sum_probs=158.0

Q ss_pred             chhHHHHHHHHHhhh----C--C--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          209 NPTTVVVEEKMSALE----G--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       209 np~~~~Lee~LA~l~----g--~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      .+....|++.+++++    |  .  ++.++++++++++.+++.+++++||+|++++|+|......    +...|+++..+
T Consensus        69 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~----~~~~g~~~~~v  144 (391)
T PRK08361         69 NAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVED----AKIAEAKPIRI  144 (391)
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHH----HHHcCCEEEEE
Confidence            345667888888875    3  2  3455555556899999999999999999999999886543    33457776655


Q ss_pred             CC-------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----c---
Q 012296          281 DP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A---  343 (466)
Q Consensus       281 d~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----~---  343 (466)
                      +.       .|+++++++++++ +++|++++|+||||.+++   +++|+++|+++++++|+|++|.......    +   
T Consensus       145 ~~~~~~~~~~d~~~l~~~i~~~-~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~  223 (391)
T PRK08361        145 PLREENEFQPDPDELLELITKR-TRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIK  223 (391)
T ss_pred             ecCCccCCCCCHHHHHHhcccc-cEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhh
Confidence            32       4789999999875 899999999999999998   7889999999999999999986532211    1   


Q ss_pred             cccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh------HHHHHHHHHHHHHH
Q 012296          344 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM------KTLHLRVQQQNSTA  417 (466)
Q Consensus       344 l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L------~tl~~R~~~~~~na  417 (466)
                      .....++++.|+||.++.+| .+.|++++++++++.+...........+.+...++...+      +.+....++..+++
T Consensus       224 ~~~~~~i~~~s~SK~~~~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  302 (391)
T PRK08361        224 YAPDNTILANSFSKTFAMTG-WRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERR  302 (391)
T ss_pred             cCCCCEEEEecCchhcCCcH-hhhhhhccCHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHH
Confidence            11235789999999999776 457999999999988877655443444444433333333      22444455667778


Q ss_pred             HHHHHHHHcCCCe
Q 012296          418 LRMAKILEAHPKV  430 (466)
Q Consensus       418 ~~La~~L~~~p~V  430 (466)
                      +.+.+.|++++++
T Consensus       303 ~~~~~~L~~~~~~  315 (391)
T PRK08361        303 KLVLKRLKEMPHI  315 (391)
T ss_pred             HHHHHHHHhCCCC
Confidence            8888999887654

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.87  E-value=3.6e-20  Score=189.63  Aligned_cols=210  Identities=18%  Similarity=0.210  Sum_probs=155.1

Q ss_pred             HHHHHHHHHhhh----CC---Cc-EEEeCCHH-HHHHHHHHHHccCC---CEEEEcCCCCcchHHHHHhhcccCCceEEE
Q 012296          212 TVVVEEKMSALE----GA---ES-TVIMASGM-SASTVMLLALVPAG---GHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~---e~-~l~~sSGs-~Ai~~al~all~~G---d~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~  279 (466)
                      ...|++.+++++    |.   .+ .+++++|+ +++..++..++++|   |+|++++|+|......    ++..|+++..
T Consensus        38 ~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~----~~~~g~~~~~  113 (350)
T TIGR03537        38 TKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERG----ALFAGGEPTA  113 (350)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEEcCCCCcchHHH----HHhcCCEEEE
Confidence            456777777764    52   23 67778777 89999999999887   6999999999986643    3456777776


Q ss_pred             eCC-------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcccc----c-
Q 012296          280 IDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA----L-  344 (466)
Q Consensus       280 vd~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~~----l-  344 (466)
                      ++.       .|+++++++++++ +++|++++|+||||.+++   +++|+++|+++|+++|+|++|.......+    . 
T Consensus       114 v~~~~~~~~~~d~~~l~~~~~~~-~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~  192 (350)
T TIGR03537       114 VKLKKEDGFLLRLEKVEKSILEE-TKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALE  192 (350)
T ss_pred             cccCcccCCccCHHHHHHhhhhc-cEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhh
Confidence            643       2789999988774 999999999999999998   88899999999999999999875332111    1 


Q ss_pred             -ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHh---hHHHHHHHHHHHHHHHHH
Q 012296          345 -SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG---MKTLHLRVQQQNSTALRM  420 (466)
Q Consensus       345 -~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~---L~tl~~R~~~~~~na~~L  420 (466)
                       .....+++.|+||.++.+| .+.|+++++++++++++..+..++...++....++...   .+.+..+.+++.++...+
T Consensus       193 ~~~~~~i~~~s~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~  271 (350)
T TIGR03537       193 VGIENVLAFHSLSKRSGMTG-YRSGFVAGDEKLISFLRKLRANFGVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLF  271 (350)
T ss_pred             cCcCCEEEEeecccccCCcc-ccceeeecCHHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence             1224588999999998887 45789999999999988877666655443332222222   234555566677778888


Q ss_pred             HHHHHcC
Q 012296          421 AKILEAH  427 (466)
Q Consensus       421 a~~L~~~  427 (466)
                      .+.|+++
T Consensus       272 ~~~l~~~  278 (350)
T TIGR03537       272 IEFFNKV  278 (350)
T ss_pred             HHHHHHC
Confidence            8888775

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.86  E-value=3.6e-20  Score=191.72  Aligned_cols=210  Identities=17%  Similarity=0.194  Sum_probs=151.3

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          212 TVVVEEKMSALE----GA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~----e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ...|++.+++++    |.    ++.+++++|+ +++..++..++++||+|++++|+|+.....    ++..|.++..++.
T Consensus        71 ~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~----~~~~g~~~~~v~~  146 (385)
T PRK09276         71 MLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIG----TIFAGGEPYFMPL  146 (385)
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHHH----HHHcCCEEEEEec
Confidence            456777777765    42    2357776766 999999999999999999999999875433    3345766665532


Q ss_pred             -------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----cc-cc--
Q 012296          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA-LS--  345 (466)
Q Consensus       283 -------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~~-l~--  345 (466)
                             .|++++++.+.++ +++|++++|+||||.+++   +++|+++|+++|+++|+|++|......    .. ..  
T Consensus       147 ~~~~g~~~d~~~l~~~~~~~-~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  225 (385)
T PRK09276        147 KEENGFLPDLDAIPEDVAKK-AKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVP  225 (385)
T ss_pred             CCCCCCcCCHHHHHHhcccc-ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccC
Confidence                   2688888888764 899999999999999997   578888899999999999998643211    11 11  


Q ss_pred             --cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHH
Q 012296          346 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALR  419 (466)
Q Consensus       346 --~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~na~~  419 (466)
                        .+..+++.|+||.||.+|. +.||++++++++++++..+.......+......+...+    +.++...++..++++.
T Consensus       226 ~~~~~~i~~~S~SK~~g~~Gl-RiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  304 (385)
T PRK09276        226 GAKDVGIEFHSLSKTYNMTGW-RIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDI  304 (385)
T ss_pred             CCcCCEEEEecchhhcCCcch-hheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence              2345889999999998874 57899999999999887765444433333333322222    3344445556777888


Q ss_pred             HHHHHHcC
Q 012296          420 MAKILEAH  427 (466)
Q Consensus       420 La~~L~~~  427 (466)
                      +.+.|+++
T Consensus       305 l~~~L~~~  312 (385)
T PRK09276        305 LVEGLRKL  312 (385)
T ss_pred             HHHHHHhC
Confidence            88999875

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.86  E-value=2e-20  Score=190.46  Aligned_cols=219  Identities=16%  Similarity=0.265  Sum_probs=161.1

Q ss_pred             cCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      .+|+.+...++++.++++++. .+.+++++|+ +++..++.+++++||+|++++|+|+...    ..+...|+++..++.
T Consensus        49 ~~y~~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~~~gd~v~~~~p~y~~~~----~~~~~~g~~~~~~~~  124 (346)
T TIGR01141        49 HRYPDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYE----ISAKIHGAEVVKVPL  124 (346)
T ss_pred             hcCCCCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHH----HHHHHcCCeEEEecc
Confidence            345566678999999999986 3445555555 8988888899999999999999986533    234456887777653


Q ss_pred             -----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhc--CCEEEEeCCCCCCCcc-cc---c-ccCCcE
Q 012296          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLNQ-KA---L-SLGADL  350 (466)
Q Consensus       283 -----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~--gillIvDea~a~~~~~-~~---l-~~gaDi  350 (466)
                           .|+++++++++++ +++|++++|+||||.+.+++++.++|+.+  |+++|+|++|...... .+   . ....++
T Consensus       125 ~~~~~~d~~~l~~~~~~~-~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i  203 (346)
T TIGR01141       125 DEDGQLDLEDILVAIDDK-PKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLI  203 (346)
T ss_pred             CCCCCCCHHHHHHhcCCC-CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEE
Confidence                 4789999988764 89999999999999999999999999887  9999999997742211 11   1 123458


Q ss_pred             EEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       351 vv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      ++.|+||+++.+| .+.|+++++++++++++.....++.  ++.....+...+   ..+....++..++++.+.+.|+++
T Consensus       204 ~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  280 (346)
T TIGR01141       204 VLRTLSKAFGLAG-LRIGYAIANAEIIDALNKVRAPFNL--SRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKL  280 (346)
T ss_pred             EEehhhHhhhchh-hhceeeecCHHHHHHHHhccCCCCC--CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8899999998776 4589999999999888776544332  233222222222   235555677788889999999988


Q ss_pred             CCeE
Q 012296          428 PKVK  431 (466)
Q Consensus       428 p~V~  431 (466)
                      |++.
T Consensus       281 ~g~~  284 (346)
T TIGR01141       281 PGLE  284 (346)
T ss_pred             CCCE
Confidence            7654

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.86  E-value=8.4e-20  Score=189.23  Aligned_cols=216  Identities=14%  Similarity=0.170  Sum_probs=161.6

Q ss_pred             hhHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          210 PTTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       210 p~~~~Lee~LA~l~----g~----e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      .....|++.+++++    |.    ++.++++++++|+..++.+++++||+|++++|+|......    ++..|+++..++
T Consensus        68 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~----~~~~g~~~~~~~  143 (393)
T PRK05764         68 AGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEM----VKLAGGVPVFVP  143 (393)
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHH----HHHcCCEEEEEe
Confidence            34577888888876    32    3455555556999999999999999999999999875433    345677777665


Q ss_pred             C-------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----c----
Q 012296          282 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A----  343 (466)
Q Consensus       282 ~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----~----  343 (466)
                      .       .|+++++++++++ +++|++++|+||||.+.+   +++|.++|++||+++|+|++|.......    +    
T Consensus       144 ~~~~~~~~~d~~~l~~~l~~~-~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~  222 (393)
T PRK05764        144 TGEENGFKLTVEQLEAAITPK-TKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASL  222 (393)
T ss_pred             cCcccCCcCCHHHHHHhhCcc-ceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHc
Confidence            3       2578999998764 899999999999999975   7889999999999999999986533210    1    


Q ss_pred             --cccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHH
Q 012296          344 --LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTA  417 (466)
Q Consensus       344 --l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~na  417 (466)
                        ...+.++++.|+||.++.+|. +.|+++++++++++++......+...++..++.+...+    +.+....++..+++
T Consensus       223 ~~~~~~~~i~~~s~SK~~~~~G~-RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  301 (393)
T PRK05764        223 SPELRDRTITVNGFSKAYAMTGW-RLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERR  301 (393)
T ss_pred             CCCCcCCEEEEecCcccccCccc-eeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence              122467999999999997874 57999999999999887776555555666655555444    33444455667788


Q ss_pred             HHHHHHHHcCCCeE
Q 012296          418 LRMAKILEAHPKVK  431 (466)
Q Consensus       418 ~~La~~L~~~p~V~  431 (466)
                      +.+.+.|++++++.
T Consensus       302 ~~l~~~L~~~~g~~  315 (393)
T PRK05764        302 DLMVDGLNEIPGLE  315 (393)
T ss_pred             HHHHHHHhhCCCCc
Confidence            88999999886543

>PRK08960 hypothetical protein; Provisional

Probab=99.86  E-value=8.4e-20  Score=189.37  Aligned_cols=213  Identities=16%  Similarity=0.161  Sum_probs=152.9

Q ss_pred             hhHHHHHHHHHhhhC------C-CcEEEeCCH-HHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          210 PTTVVVEEKMSALEG------A-ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       210 p~~~~Lee~LA~l~g------~-e~~l~~sSG-s~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      .....+++.++++++      . .+.+++++| ++++..++..++.+||+|++++|+|+.....+.    ..|.++..++
T Consensus        69 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~----~~g~~~~~v~  144 (387)
T PRK08960         69 RGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLR----LVEGAAQLVP  144 (387)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH----hcCCeEEEEe
Confidence            345677888887752      2 344555555 599999999999999999999999998765443    3455554443


Q ss_pred             C-------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----ccccc-
Q 012296          282 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALSL-  346 (466)
Q Consensus       282 ~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~~l~~-  346 (466)
                      .       .|+++++++++++ ++++++.+|+||||.+++   +++|+++|+++|+++|+|++|......    ..... 
T Consensus       145 ~~~~~~~~~d~~~l~~~~~~~-~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~  223 (387)
T PRK08960        145 VGPDSRYQLTPALVERHWNAD-TVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVD  223 (387)
T ss_pred             cCcccCCCCCHHHHHHHhCcc-ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhcc
Confidence            1       3688999988875 889999999999999997   456777899999999999998653221    11122 


Q ss_pred             CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHH
Q 012296          347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQQQNSTALRMA  421 (466)
Q Consensus       347 gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L-----~tl~~R~~~~~~na~~La  421 (466)
                      ...+++.|+||.+|.+| .+.||+++++++++.++..........+.....++...+     +.+....++..++++.+.
T Consensus       224 ~~vi~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~  302 (387)
T PRK08960        224 DDAFVLNSFSKYFGMTG-WRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLL  302 (387)
T ss_pred             CCEEEEeecccccCCcc-cEEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH
Confidence            23478999999999887 468999999999998887766554444444333222222     344445556777888899


Q ss_pred             HHHHcCC
Q 012296          422 KILEAHP  428 (466)
Q Consensus       422 ~~L~~~p  428 (466)
                      +.|++++
T Consensus       303 ~~L~~~~  309 (387)
T PRK08960        303 PALRELG  309 (387)
T ss_pred             HHHHhcC
Confidence            9998764

>PLN00175 aminotransferase family protein; Provisional

Probab=99.86  E-value=7.4e-20  Score=191.90  Aligned_cols=210  Identities=15%  Similarity=0.198  Sum_probs=155.2

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          212 TVVVEEKMSALE----GA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~----e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ..+|++.+++++    |.    ++.+++++|+ +|+..++.+++++||+|++++|.|......    ++..|.++..++.
T Consensus        93 ~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~  168 (413)
T PLN00175         93 VPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT----LSMAGAKIKTVTL  168 (413)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHH----HHHcCCEEEEEEC
Confidence            446667666654    32    2246666655 999999999999999999999999875433    3456777766642


Q ss_pred             ------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc---c-cc----
Q 012296          283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---A-LS----  345 (466)
Q Consensus       283 ------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~---~-l~----  345 (466)
                            .|+++|++++.++ +++|++++|+||||.+++   +++|+++|+++|+++|+|++|.......   + ..    
T Consensus       169 ~~~~~~~~~~~l~~~~~~~-~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~  247 (413)
T PLN00175        169 RPPDFAVPEDELKAAFTSK-TRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGM  247 (413)
T ss_pred             CcccCCCCHHHHHHhcCcC-ceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCC
Confidence                  3689999999875 899999999999999985   6778999999999999999987543211   1 11    


Q ss_pred             cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHHHH
Q 012296          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRMA  421 (466)
Q Consensus       346 ~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~na~~La  421 (466)
                      .+..|++.|+||.|+.+|. +.||+++++++++.++........+.+....+++...+    ..+....+++.++++.+.
T Consensus       248 ~~~vi~i~SfSK~~~~~G~-RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~  326 (413)
T PLN00175        248 YERTVTMNSLGKTFSLTGW-KIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILV  326 (413)
T ss_pred             cCcEEEEecchhhccCcch-heeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            2346899999999998874 58999999999998887765544444444444444444    234555666778889999


Q ss_pred             HHHHcC
Q 012296          422 KILEAH  427 (466)
Q Consensus       422 ~~L~~~  427 (466)
                      +.|+++
T Consensus       327 ~~L~~~  332 (413)
T PLN00175        327 EGLKEV  332 (413)
T ss_pred             HHHHHC
Confidence            999886

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.86  E-value=9.6e-20  Score=188.85  Aligned_cols=219  Identities=12%  Similarity=0.157  Sum_probs=155.4

Q ss_pred             CCCchh-HHHHHHHHHhhh----C--C-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCce
Q 012296          206 RYGNPT-TVVVEEKMSALE----G--A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (466)
Q Consensus       206 R~~np~-~~~Lee~LA~l~----g--~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~  276 (466)
                      +|+++. ...|++.+++++    |  . .+.+++++|+ +|+..++.+++++||+|++++|+|......+    ...|.+
T Consensus        61 ~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~----~~~g~~  136 (384)
T PRK06348         61 RYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQI----EMVGGK  136 (384)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHH----HHcCCE
Confidence            344333 356777777765    2  2 3455555555 9999999999999999999999999866444    334655


Q ss_pred             EEEeC-----C--CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc---c
Q 012296          277 ATVID-----P--ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---A  343 (466)
Q Consensus       277 v~~vd-----~--~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~---~  343 (466)
                      +..++     .  .|+++|+++++++ +++|++++|+||||.+.+   +++|.++|+++|+++|+|++|.......   +
T Consensus       137 ~~~~~~~~~~~~~~d~~~l~~~~~~~-~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~  215 (384)
T PRK06348        137 PIILETYEEDGFQINVKKLEALITSK-TKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVP  215 (384)
T ss_pred             EEEecCCcCcCCcCCHHHHHHhhCcC-ccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccc
Confidence            55543     1  4789999988764 899999999999999986   6788888999999999999987543211   1


Q ss_pred             ---cc--cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---H-HHHHHHHHHH
Q 012296          344 ---LS--LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---K-TLHLRVQQQN  414 (466)
Q Consensus       344 ---l~--~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~-tl~~R~~~~~  414 (466)
                         +.  .+..+++.|+||.++.+| ++.||+++++++++.++..........++....++...+   + .+....+...
T Consensus       216 ~~~~~~~~~~vi~~~SfSK~~~l~G-lRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~  294 (384)
T PRK06348        216 MATLAGMPERTITFGSFSKDFAMTG-WRIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQ  294 (384)
T ss_pred             hhhcCCCcCcEEEEecchhccCCcc-ccceeeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence               11  234689999999999777 468999999999998887766444444444333333322   2 2333344556


Q ss_pred             HHHHHHHHHHHcCCCe
Q 012296          415 STALRMAKILEAHPKV  430 (466)
Q Consensus       415 ~na~~La~~L~~~p~V  430 (466)
                      ++++.+.+.|++++++
T Consensus       295 ~r~~~~~~~L~~~~~~  310 (384)
T PRK06348        295 KRLEYAYKRIESIPNL  310 (384)
T ss_pred             HHHHHHHHHHhcCCCc
Confidence            7778888899877553

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.86  E-value=6.4e-20  Score=192.55  Aligned_cols=218  Identities=17%  Similarity=0.215  Sum_probs=158.6

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEe-CCHHHHHHHHHHH----HccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          210 PTTVVVEEKMSALEGAE--STVIM-ASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e--~~l~~-sSGs~Ai~~al~a----ll~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ...+++++.+++++|.+  +.+++ +++++++..++.+    .+++||+|+++.+.|++.+..+....+..|+++++++.
T Consensus        76 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~  155 (424)
T PLN02855         76 DAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGL  155 (424)
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEec
Confidence            44678899999999972  34544 5556898888875    36899999999999998776666666777888887753


Q ss_pred             -----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEECCc
Q 012296          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSAT  356 (466)
Q Consensus       283 -----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S~s  356 (466)
                           .|+++++++++++ +++|++++|+||||.+.|+++|.++|+++|+++++|++++.+. ..+...+++|+++.|+|
T Consensus       156 ~~~~~~~~~~l~~~i~~~-t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~  234 (424)
T PLN02855        156 TPDEVLDVEQLKELLSEK-TKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSH  234 (424)
T ss_pred             CCCCCcCHHHHHHHhccC-ceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecc
Confidence                 3789999999874 9999999999999999999999999999999999999987543 23444578999999999


Q ss_pred             cccCccccceeEEEEeCHHHHHHHHHHH---------------------HHhCCCchHHHHHHHHHhhHH-----HHHHH
Q 012296          357 KFIGGHNDVLAGSISGSGKLVTQIRNLH---------------------HVLGGALNPNAAYLIIRGMKT-----LHLRV  410 (466)
Q Consensus       357 K~lgg~gdv~gG~ivg~~eli~~l~~~~---------------------~~~G~~lsp~~a~l~l~~L~t-----l~~R~  410 (466)
                      |++|++|   .|+++.++++++++..+.                     +...++.+....+.+...++.     ++...
T Consensus       235 K~~gp~G---~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~  311 (424)
T PLN02855        235 KMCGPTG---IGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIH  311 (424)
T ss_pred             cccCCCc---cEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            9776554   689998888877653221                     000112222222222223332     22233


Q ss_pred             HHHHHHHHHHHHHHHcCCCeE
Q 012296          411 QQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       411 ~~~~~na~~La~~L~~~p~V~  431 (466)
                      ++..+.++.+.+.|+++++++
T Consensus       312 ~~~~~l~~~l~~~L~~~~g~~  332 (424)
T PLN02855        312 EYEVELGTYLYEKLSSVPGVR  332 (424)
T ss_pred             HHHHHHHHHHHHHHhcCCCEE
Confidence            455667788888888888875

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.86  E-value=4.7e-20  Score=191.31  Aligned_cols=211  Identities=20%  Similarity=0.249  Sum_probs=168.2

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC----
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----  282 (466)
                      ..|...+||+.+++++|.+.+++++||++|+.+++.++ +++||+||++++.|.++...+    ...|++++++|.    
T Consensus        31 ~g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~----~~~G~~~v~vd~~~~~  106 (379)
T PRK11658         31 TGPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMI----VLLGATPVMVDVDRDT  106 (379)
T ss_pred             CCHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHH----HHcCCEEEEEecCCCc
Confidence            36889999999999999999999999999999999998 899999999999999876433    346888888763    


Q ss_pred             --CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc---ccccCCcEEEECCcc
Q 012296          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---ALSLGADLVLHSATK  357 (466)
Q Consensus       283 --~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~---~l~~gaDivv~S~sK  357 (466)
                        .|+++++++++++ +++|+   |+|++|.+.|+++|.++|+++|+++|+|++++.+....   ....|.++..++.+|
T Consensus       107 ~~~d~~~l~~~i~~~-tkav~---~~~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K  182 (379)
T PRK11658        107 LMVTPEAIEAAITPR-TKAII---PVHYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIK  182 (379)
T ss_pred             CCcCHHHHHHhcccC-CeEEE---EeCCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCEEEeCCCCC
Confidence              3789999999875 89887   57789999999999999999999999999987544322   234455666666678


Q ss_pred             ccCccccceeEEEEeC-HHHHHHHHHHHHH----------------------hC--CCchHHHHHHHHHhhHHHHHHHHH
Q 012296          358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHV----------------------LG--GALNPNAAYLIIRGMKTLHLRVQQ  412 (466)
Q Consensus       358 ~lgg~gdv~gG~ivg~-~eli~~l~~~~~~----------------------~G--~~lsp~~a~l~l~~L~tl~~R~~~  412 (466)
                      .+.++   .||+++++ +++.++++.++..                      .|  ..++.+.|.+.+..++.++..+++
T Consensus       183 ~l~~g---~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~  259 (379)
T PRK11658        183 NITCA---EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEALNAR  259 (379)
T ss_pred             cCccc---CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence            88664   47888875 7888877764421                      11  124456677777788889988999


Q ss_pred             HHHHHHHHHHHHHcCCC
Q 012296          413 QNSTALRMAKILEAHPK  429 (466)
Q Consensus       413 ~~~na~~La~~L~~~p~  429 (466)
                      .+++++.+.+.|++.|.
T Consensus       260 r~~~a~~~~~~L~~~~~  276 (379)
T PRK11658        260 RREIAARYLQALADLPF  276 (379)
T ss_pred             HHHHHHHHHHHhcCCCC
Confidence            99999999999988763

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.86  E-value=1.6e-19  Score=186.70  Aligned_cols=219  Identities=16%  Similarity=0.195  Sum_probs=153.6

Q ss_pred             cCCCch-hHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          205 GRYGNP-TTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       205 ~R~~np-~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ..|+.+ ...+|++.+++++|.  ++.++++++++++..++.+++.+||+|++++|.|.....    .++..|.++..++
T Consensus        60 ~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~~----~~~~~g~~~~~v~  135 (380)
T PRK06225         60 CKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDN----FASRFGAEVIEVP  135 (380)
T ss_pred             CCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHHhCceEEeec
Confidence            344444 367899999999987  346666667799999999999999999999999986442    3345677766554


Q ss_pred             C--------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----cccc
Q 012296          282 P--------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----ALSL  346 (466)
Q Consensus       282 ~--------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----~l~~  346 (466)
                      .        .|+++++++++++ +++|++.+|+||||.+++   +++|.++|+++|+++|+|++|.......    ....
T Consensus       136 ~~~~~~~~~~d~~~l~~~~~~~-~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~  214 (380)
T PRK06225        136 IYSEECNYKLTPELVKENMDEN-TRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAP  214 (380)
T ss_pred             cccccCCccCCHHHHHhhcCCC-ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCC
Confidence            2        3789999999875 899999999999999875   8889999999999999999974311111    1112


Q ss_pred             CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH---HHHHHH-HHHHHHHHHHHH
Q 012296          347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRV-QQQNSTALRMAK  422 (466)
Q Consensus       347 gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~---tl~~R~-~~~~~na~~La~  422 (466)
                      ...+++.|+||+++.+| ++.|++++++++++.++..... ....+...+.++...++   .+..++ +...++.+.+.+
T Consensus       215 ~~~i~~~s~SK~~g~~G-~RiG~i~~~~~l~~~~~~~~~~-~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~  292 (380)
T PRK06225        215 EHTVTSYSFSKIFGMAG-LRIGAVVATPDLIEVVKSIVIN-DLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKE  292 (380)
T ss_pred             CCEEEEeechhhcCCcc-ceeEEEecCHHHHHHHHHHHhc-ccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            34688999999998676 5689999999999888765421 12223333333222222   222233 234456667778


Q ss_pred             HHHcCCCe
Q 012296          423 ILEAHPKV  430 (466)
Q Consensus       423 ~L~~~p~V  430 (466)
                      .|++++++
T Consensus       293 ~L~~~~~~  300 (380)
T PRK06225        293 AVDEIEGV  300 (380)
T ss_pred             HHHhCcCC
Confidence            88876553

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.86  E-value=1.4e-19  Score=188.32  Aligned_cols=209  Identities=18%  Similarity=0.202  Sum_probs=150.8

Q ss_pred             HHHHHHHHhhh----CC-----CcEEEeCCHH-HHHHHHHHHHccC---CCEEEEcCCCCcchHHHHHhhcccCCceEEE
Q 012296          213 VVVEEKMSALE----GA-----ESTVIMASGM-SASTVMLLALVPA---GGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (466)
Q Consensus       213 ~~Lee~LA~l~----g~-----e~~l~~sSGs-~Ai~~al~all~~---Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~  279 (466)
                      ..|++.|++++    |.     ++.+++++|+ +++..++.+++++   ||.|+++.|.|.....    .+...|+++..
T Consensus        68 ~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~----~~~~~g~~~~~  143 (396)
T PRK09147         68 PALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEG----AALLAGAEPYF  143 (396)
T ss_pred             HHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHH----HHHhcCCEEEE
Confidence            45666666643    53     2367777776 9999999999999   8999999999987543    34456777766


Q ss_pred             eCC-------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc---c---
Q 012296          280 IDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---A---  343 (466)
Q Consensus       280 vd~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~---~---  343 (466)
                      ++.       .|++++++.+.+ ++++|++++|+||||.+++   +++|+++|++|+++||+||+|.......   +   
T Consensus       144 vp~~~~~~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~  222 (396)
T PRK09147        144 LNCDPANNFAPDFDAVPAEVWA-RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGL  222 (396)
T ss_pred             eccCccccCccCHHHHHHHHhh-ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchh
Confidence            642       368889887766 4899999999999999995   6788888999999999999987543211   0   


Q ss_pred             c----cc-----CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHH
Q 012296          344 L----SL-----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQ  411 (466)
Q Consensus       344 l----~~-----gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~  411 (466)
                      +    ..     ...+++.|+||.++.+| ++.||+++++++++++.+.+...+...++....++...+   +.+....+
T Consensus       223 ~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~  301 (396)
T PRK09147        223 LEAAAELGRDDFKRLVVFHSLSKRSNVPG-LRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWNDEAHVRENRA  301 (396)
T ss_pred             hhhccccCccccccEEEEeccccccCCcc-ceeeeecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHhcchhHHHHHHH
Confidence            1    11     23489999999998888 468999999999998887665544444444433322222   33444556


Q ss_pred             HHHHHHHHHHHHHHcC
Q 012296          412 QQNSTALRMAKILEAH  427 (466)
Q Consensus       412 ~~~~na~~La~~L~~~  427 (466)
                      ...++++.+.+.|+++
T Consensus       302 ~~~~~~~~~~~~L~~~  317 (396)
T PRK09147        302 LYREKFDAVTPILAPV  317 (396)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            6677777788887763

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.86  E-value=2.7e-20  Score=189.41  Aligned_cols=215  Identities=20%  Similarity=0.264  Sum_probs=150.1

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      +.||+++...+|++++|+++|. ...|++++|+ +++..++. ++.+|+ |++.+|+|.....    .++..|+++..++
T Consensus        34 ~~~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~-~~~~~~-vv~~~P~y~~y~~----~~~~~G~~v~~vp  107 (332)
T PRK06425         34 ISIYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLS-YINVGN-IIIVEPNFNEYKG----YAFTHGIRISALP  107 (332)
T ss_pred             cccCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH-HhCCCc-EEEeCCChHHHHH----HHHHcCCeEEEEe
Confidence            6789999999999999999997 4567777777 88888876 567765 6666999987553    3455688887775


Q ss_pred             CCCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc--c-c----ccCCcEE
Q 012296          282 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK--A-L----SLGADLV  351 (466)
Q Consensus       282 ~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~--~-l----~~gaDiv  351 (466)
                      .++.+...+.++..++++|++++|+||||.+++   +++|+++|+++|+++|+||+|.......  + .    ..+..++
T Consensus       108 ~~~~~~~~~~l~~~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~  187 (332)
T PRK06425        108 FNLINNNPEILNNYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVII  187 (332)
T ss_pred             CCcccCcHHHHhhcCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEE
Confidence            431111122232225899999999999999997   5667778899999999999987543211  1 1    1234588


Q ss_pred             EECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHH-hhHH-HHHHHHHHHHHHHHHHHHHHcC
Q 012296          352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR-GMKT-LHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       352 v~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~-~L~t-l~~R~~~~~~na~~La~~L~~~  427 (466)
                      +.|+||.++.+| ++.||+++++++++++++....+..  +...+..+.. ..+. ++...+...++++.+.+.|+++
T Consensus       188 ~~SfSK~~~l~G-lRiGy~v~~~~li~~l~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  262 (332)
T PRK06425        188 GRSLTKILGIPS-LRIGYIATDDYNMKISRKITEPWSV--CDPAIDFIRSIDLDYVAKHSLDIMENERSYLINNLEAM  262 (332)
T ss_pred             EeecHHhcCCch-hhheeeecCHHHHHHHHHcCCCCcc--CHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            999999999887 4579999999999988875443322  2222222111 1222 2344566678888899999876

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.86  E-value=4.8e-20  Score=191.10  Aligned_cols=211  Identities=13%  Similarity=0.119  Sum_probs=150.7

Q ss_pred             hHHHHHHHHHhhh----C--C-Cc-EEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          211 TTVVVEEKMSALE----G--A-ES-TVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       211 ~~~~Lee~LA~l~----g--~-e~-~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ....|++.+|+++    |  . .+ .|++++|+ +++..++.+++.+||+|++++|+|......    +...|.++..++
T Consensus        69 G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~  144 (388)
T PRK07366         69 GTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGG----VYLAGGQIYPMP  144 (388)
T ss_pred             CCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHH----HHhcCCEEEEEE
Confidence            3456777777765    4  2 23 57778777 899999999999999999999999886533    344677766654


Q ss_pred             C-------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc------ccc
Q 012296          282 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK------ALS  345 (466)
Q Consensus       282 ~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~------~l~  345 (466)
                      .       .|++++++.+.++ +++|++++|+||||.+++   +++|+++|+++|++||+||+|.......      ...
T Consensus       145 ~~~~~~~~~d~~~l~~~~~~~-~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~  223 (388)
T PRK07366        145 LRAENDFLPVFADIPTEVLAQ-ARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQ  223 (388)
T ss_pred             CCCccCCCCCHHHHHHhhccc-ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhh
Confidence            2       2567787777654 899999999999999987   4567778999999999999986543211      111


Q ss_pred             c----CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCc-hHH--HHHHHHH-hhHHHHHHHHHHHHHH
Q 012296          346 L----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL-NPN--AAYLIIR-GMKTLHLRVQQQNSTA  417 (466)
Q Consensus       346 ~----gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~l-sp~--~a~l~l~-~L~tl~~R~~~~~~na  417 (466)
                      +    ...+++.|+||.+|.+| .+.||+++++++++++...+...+.+. +..  .+...+. .-+.+....+...+++
T Consensus       224 ~~~~~~~vi~~~SfSK~~g~~G-lRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r  302 (388)
T PRK07366        224 ADPEKSVSIEFFTLSKSYNMGG-FRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRR  302 (388)
T ss_pred             CCCCcccEEEEeecccccCCcc-hhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            1    12478899999999887 458999999999999988776554332 222  1212221 1234555556677888


Q ss_pred             HHHHHHHHcC
Q 012296          418 LRMAKILEAH  427 (466)
Q Consensus       418 ~~La~~L~~~  427 (466)
                      +.+.+.|+++
T Consensus       303 ~~l~~~L~~~  312 (388)
T PRK07366        303 DAFINALHQI  312 (388)
T ss_pred             HHHHHHHHHC
Confidence            8888899876

>PRK09082 methionine aminotransferase; Validated

Probab=99.86  E-value=1.4e-19  Score=187.76  Aligned_cols=212  Identities=17%  Similarity=0.161  Sum_probs=152.6

Q ss_pred             hhHHHHHHHHHhhhCC----CcEEEeCC-HHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC--
Q 012296          210 PTTVVVEEKMSALEGA----ESTVIMAS-GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~----e~~l~~sS-Gs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--  282 (466)
                      +..+.+.+.+.++++.    +..+++++ |++|+..++.+++.+||+|++++|.|......+    +..|.++..++.  
T Consensus        71 ~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~----~~~g~~~~~~~~~~  146 (386)
T PRK09082         71 ALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAI----ELAGGRAVRVALQP  146 (386)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHH----HHcCCEEEEEecCc
Confidence            3455666666666665    22455555 459999999999999999999999999865443    345777666653  


Q ss_pred             ----CCHHHHHHhhcCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCc-----ccccc----c
Q 012296          283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALS----L  346 (466)
Q Consensus       283 ----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~---dl~~Ia~la~~~gillIvDea~a~~~~-----~~~l~----~  346 (466)
                          .|++++++.++++ +++|++++|+||||.++   ++++|.++|+++|+++|+|++|.....     .....    .
T Consensus       147 ~~~~~d~~~l~~~~~~~-~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~  225 (386)
T PRK09082        147 PDFRVDWQRFAAAISPR-TRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELR  225 (386)
T ss_pred             ccccCCHHHHHHhcCcc-ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCcc
Confidence                3788999999874 89999999999999885   578899999999999999999764322     11111    2


Q ss_pred             CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHH
Q 012296          347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRMAK  422 (466)
Q Consensus       347 gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~na~~La~  422 (466)
                      +..+++.|+||.++.+| .+.||+++++++++.+++.........+.....++...+    +.++...+...++++.+.+
T Consensus       226 ~~~i~~~S~SK~~~~~G-~RiG~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  304 (386)
T PRK09082        226 ERAFVVSSFGKTYHVTG-WKVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRA  304 (386)
T ss_pred             CcEEEEeechhhccchh-hhhhhhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            35689999999998887 458999999999999888765443333443333222222    3344444566788888889


Q ss_pred             HHHcC
Q 012296          423 ILEAH  427 (466)
Q Consensus       423 ~L~~~  427 (466)
                      .|+++
T Consensus       305 ~L~~~  309 (386)
T PRK09082        305 ALANS  309 (386)
T ss_pred             HHHhC
Confidence            98864

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.86  E-value=1e-19  Score=188.69  Aligned_cols=168  Identities=21%  Similarity=0.260  Sum_probs=134.3

Q ss_pred             hhHHHHHHHHHhhhCCC-cEEEe-CCHHHHHHHHHHHH---ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC--
Q 012296          210 PTTVVVEEKMSALEGAE-STVIM-ASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e-~~l~~-sSGs~Ai~~al~al---l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--  282 (466)
                      +..+++++.+++++|++ ..+++ .++++++..++.++   +++||+|++.++.|.+....+...++..|+++.+++.  
T Consensus        60 ~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~  139 (397)
T TIGR01976        60 QVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDE  139 (397)
T ss_pred             HHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccc
Confidence            45789999999999973 34555 45557777666654   6899999999999988765554556677888877653  


Q ss_pred             ----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEECCcc
Q 012296          283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATK  357 (466)
Q Consensus       283 ----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S~sK  357 (466)
                          .|+++++++++++ +++|++++|+||+|.+.|+++|.++|+++|+++++|+++..+. ..+..++++|+++.|+||
T Consensus       140 ~~~~~~~~~l~~~i~~~-~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K  218 (397)
T TIGR01976       140 ATGELHPDDLASLLSPR-TRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYK  218 (397)
T ss_pred             cCCCcCHHHHHHhcCCC-ceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechh
Confidence                2689999999875 8999999999999999999999999999999999999975432 233445789999999999


Q ss_pred             ccCccccceeEEEEeCHHHHHHHHH
Q 012296          358 FIGGHNDVLAGSISGSGKLVTQIRN  382 (466)
Q Consensus       358 ~lgg~gdv~gG~ivg~~eli~~l~~  382 (466)
                      ++|.+    .|++++++++++.+..
T Consensus       219 ~~g~~----~G~l~~~~~~~~~l~~  239 (397)
T TIGR01976       219 FFGPH----MGILWGRPELLMNLPP  239 (397)
T ss_pred             hcCCc----eEEEEEcHHHHhhCCC
Confidence            98632    6899999988877653

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.86  E-value=9.1e-20  Score=192.22  Aligned_cols=214  Identities=15%  Similarity=0.135  Sum_probs=150.5

Q ss_pred             hHHHHHHHHHhhhCC--------CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          211 TTVVVEEKMSALEGA--------ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       211 ~~~~Lee~LA~l~g~--------e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ...+|++.++++++.        +++++++++++|+.+++..++++||+|++++|.|+.....    ....|+++.+++.
T Consensus        95 G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~----~~~~g~~~~~~~~  170 (430)
T PLN00145         95 GLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEAR----AVFSGLEVRHFDL  170 (430)
T ss_pred             cCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHHH----HHHcCCEEEEeeC
Confidence            456788888887642        3455555556999999999999999999999999975432    2345667666542


Q ss_pred             -------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----ccc-c--
Q 012296          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL-S--  345 (466)
Q Consensus       283 -------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~~l-~--  345 (466)
                             .|+++++++++++ ++++++++|+||||.+++   +++|+++|+++|+++|+|++|....+.    .++ .  
T Consensus       171 ~~~~~~~~d~~~l~~~~~~~-~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~  249 (430)
T PLN00145        171 LPERGWEVDLEGVEALADEN-TVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFG  249 (430)
T ss_pred             CcccCCcCCHHHHHHHhCcC-ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhc
Confidence                   3789999988875 899999999999999997   778888999999999999998753321    111 1  


Q ss_pred             -cCCcEEEECCccccCccccceeEEEEe--CHHHHH------HHHHHHHHhCCCchHHHHHHHHHhh-----HHHHHHHH
Q 012296          346 -LGADLVLHSATKFIGGHNDVLAGSISG--SGKLVT------QIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQ  411 (466)
Q Consensus       346 -~gaDivv~S~sK~lgg~gdv~gG~ivg--~~eli~------~l~~~~~~~G~~lsp~~a~l~l~~L-----~tl~~R~~  411 (466)
                       ....+++.|+||.|+.+|+ +.||+++  ++++++      .++.... .....+.+..+++...+     +.+...++
T Consensus       250 ~~~~vi~~~S~SK~~~~pG~-RlG~iv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~  327 (430)
T PLN00145        250 EVAPVLTLGSISKRWVVPGW-RLGWIATCDPNGILKETKVVDSIRNYLN-ISTDPATFVQGAIPQIIANTKEEFFTKTLG  327 (430)
T ss_pred             ccCcEEEEeccccccCCCCe-eEEEEEEecchhhhhhhHHHHHHHHHhc-ccCCCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence             1235899999999999986 4788875  344443      2333322 22222333333322222     34566677


Q ss_pred             HHHHHHHHHHHHHHcCCCeE
Q 012296          412 QQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       412 ~~~~na~~La~~L~~~p~V~  431 (466)
                      +..++++.+.+.|++++++.
T Consensus       328 ~~~~~~~~~~~~L~~~~g~~  347 (430)
T PLN00145        328 LLKETADICYEKIKEIKCIT  347 (430)
T ss_pred             HHHHHHHHHHHHHhcCCCCC
Confidence            78888999999999877654

>PLN02483 serine palmitoyltransferase

Probab=99.86  E-value=1.1e-19  Score=194.65  Aligned_cols=211  Identities=17%  Similarity=0.212  Sum_probs=164.1

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHH
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~L  288 (466)
                      .+..++||+.+|+++|.++++++++|+.++..++.+++++||+|+++++.|.+....    ++..|++++.++..|++++
T Consensus       145 ~~~~~ele~~lA~~~g~~~ai~~~~G~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~~----~~~~Ga~v~~~~~~d~~~l  220 (489)
T PLN02483        145 TKLHRELEELVARFVGKPAAIVFGMGYATNSTIIPALIGKGGLIISDSLNHNSIVNG----ARGSGATIRVFQHNTPSHL  220 (489)
T ss_pred             cHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCCCCEEEEcchhhHHHHHH----HHHcCCeEEEEeCCCHHHH
Confidence            678899999999999999999999999888888899999999999999999986543    4557889988888888888


Q ss_pred             HHhhcC------CCc-----e-EEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc----------ccccc
Q 012296          289 EAALNN------NNV-----S-LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ----------KALSL  346 (466)
Q Consensus       289 e~ai~~------~~t-----k-lV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~----------~~l~~  346 (466)
                      ++.+++      .++     + +|+++...|++|.+.++++|.++|+++|++||+||++..+...          .....
T Consensus       221 e~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~  300 (489)
T PLN02483        221 EEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPA  300 (489)
T ss_pred             HHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcc
Confidence            776642      112     4 6677778899999999999999999999999999998643210          11113


Q ss_pred             CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHH---------HHHHHHHHHH
Q 012296          347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKT---------LHLRVQQQNS  415 (466)
Q Consensus       347 gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--~~G~~lsp~~a~l~l~~L~t---------l~~R~~~~~~  415 (466)
                      +.||++.|+||++++.    ||++++++++++.++....  .++..+++..+..++..++.         ...++++..+
T Consensus       301 ~~dI~~~SfSKs~g~~----GG~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~  376 (489)
T PLN02483        301 DVDIMMGTFTKSFGSC----GGYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRE  376 (489)
T ss_pred             cCcEEEEecchhcccC----ceEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHH
Confidence            5789999999999875    5999999999999886543  23444444443333444432         2346778889


Q ss_pred             HHHHHHHHHHcC
Q 012296          416 TALRMAKILEAH  427 (466)
Q Consensus       416 na~~La~~L~~~  427 (466)
                      +++.+.+.|+++
T Consensus       377 ~~~~l~~~L~~~  388 (489)
T PLN02483        377 NSNFFRSELQKM  388 (489)
T ss_pred             HHHHHHHHHHHC
Confidence            999999999986

>PRK08068 transaminase; Reviewed

Probab=99.86  E-value=1.3e-19  Score=188.12  Aligned_cols=213  Identities=13%  Similarity=0.065  Sum_probs=153.5

Q ss_pred             chhHHHHHHHHHhhh----CC---Cc-EEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEE
Q 012296          209 NPTTVVVEEKMSALE----GA---ES-TVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (466)
Q Consensus       209 np~~~~Lee~LA~l~----g~---e~-~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~  279 (466)
                      .+....|++++++++    |.   .+ .+++++|+ +++..++.+++++||+|++++|+|+.....    ++..|+++..
T Consensus        69 ~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~----~~~~g~~~~~  144 (389)
T PRK08068         69 FRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSG----VALARAQFET  144 (389)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHH----HHhcCCEEEE
Confidence            344667888888876    42   23 45555554 899998999999999999999999876533    3456776666


Q ss_pred             eCC-------CCHHHHHHhhcCCCceEEEEeCCCCCCcccccH---HHHHHHHHhcCCEEEEeCCCCCCCcc--c--c-c
Q 012296          280 IDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ--K--A-L  344 (466)
Q Consensus       280 vd~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl---~~Ia~la~~~gillIvDea~a~~~~~--~--~-l  344 (466)
                      ++.       .|++++++.++++ +++|++++|+||||.+++.   ++|+++|+++|+++|+||+|......  .  + .
T Consensus       145 i~~~~~~~~~~d~~~l~~~~~~~-~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~  223 (389)
T PRK08068        145 MPLIAENNFLPDYTKIPEEVAEK-AKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFL  223 (389)
T ss_pred             eecccccCCCCCHHHHHHhcccc-ceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChh
Confidence            543       2578898888764 8999999999999999975   57788899999999999998542211  1  1 1


Q ss_pred             c----cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHH----hhHHHHHHHHHHHHH
Q 012296          345 S----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR----GMKTLHLRVQQQNST  416 (466)
Q Consensus       345 ~----~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~----~L~tl~~R~~~~~~n  416 (466)
                      .    ....+++.|+||.|+.+| .+.||+++++++++.+......+..+..+..+..+..    +-+.++...++..++
T Consensus       224 ~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~  302 (389)
T PRK08068        224 QTPGAKDVGIELYTLSKTFNMAG-WRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQSCVAELVARYESR  302 (389)
T ss_pred             hCCCccCCEEEEecchhccCCcc-ceeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            1    124589999999998887 4689999999999998877665554433322222222    224455566677788


Q ss_pred             HHHHHHHHHcC
Q 012296          417 ALRMAKILEAH  427 (466)
Q Consensus       417 a~~La~~L~~~  427 (466)
                      ++.+.+.|+++
T Consensus       303 r~~~~~~L~~~  313 (389)
T PRK08068        303 RNAFISACREI  313 (389)
T ss_pred             HHHHHHHHHHC
Confidence            88888888875

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.86  E-value=9.3e-20  Score=188.68  Aligned_cols=212  Identities=24%  Similarity=0.275  Sum_probs=169.3

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-----
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----  282 (466)
                      .+...+||+.+++++|.+.+++++||++|+.+++.++ +++||+|+++.+.|.++...    +...|++++++|.     
T Consensus        28 g~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~----~~~~G~~~~~~~~~~~~~  103 (380)
T TIGR03588        28 GPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANC----ALYCGAKVDFVDIDPDTG  103 (380)
T ss_pred             ChhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHH----HHHcCCEEEEEecCCCcC
Confidence            5778999999999999998999999999999999998 89999999999999886533    4456888888764     


Q ss_pred             -CCHHHHHHhhc----CCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCC----cEEEE
Q 012296          283 -ADMEGLEAALN----NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA----DLVLH  353 (466)
Q Consensus       283 -~Dle~Le~ai~----~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~ga----Divv~  353 (466)
                       .|+++++++++    + ++++|++   +|++|...|+++|.++|+++|++||+|++++.+...+....|.    |++++
T Consensus       104 ~~d~~~l~~~i~~~~~~-~t~~v~~---~~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~  179 (380)
T TIGR03588       104 NIDEDALEKKLAAAKGK-LPKAIVP---VDFAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYADATVF  179 (380)
T ss_pred             CcCHHHHHHHhhcccCC-CceEEEE---eCCCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccceEEE
Confidence             37899999998    4 4898885   5578999999999999999999999999987654333333444    99999


Q ss_pred             CCc--cccCccccceeEEEEe-CHHHHHHHHHHHHH-----------------------hC--CCchHHHHHHHHHhhHH
Q 012296          354 SAT--KFIGGHNDVLAGSISG-SGKLVTQIRNLHHV-----------------------LG--GALNPNAAYLIIRGMKT  405 (466)
Q Consensus       354 S~s--K~lgg~gdv~gG~ivg-~~eli~~l~~~~~~-----------------------~G--~~lsp~~a~l~l~~L~t  405 (466)
                      |++  |+++.+   .||+++. ++++.++++..+..                       .|  ..++.+.+.+.+..|+.
T Consensus       180 S~~~~K~~~~~---~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~  256 (380)
T TIGR03588       180 SFHPVKIITTA---EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKK  256 (380)
T ss_pred             ecCCCCccccc---CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHH
Confidence            987  899765   3676665 56777777654320                       11  23455667777778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCeE
Q 012296          406 LHLRVQQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       406 l~~R~~~~~~na~~La~~L~~~p~V~  431 (466)
                      ++.++++.+++++.+.+.|.+.|.+.
T Consensus       257 l~~~~~~r~~~~~~~~~~L~~~~~~~  282 (380)
T TIGR03588       257 LDRFVAKRREIAARYDRLLKDLPYFT  282 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            99999999999999999999887653

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.85  E-value=1.2e-19  Score=184.52  Aligned_cols=212  Identities=21%  Similarity=0.217  Sum_probs=163.0

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHH
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~L  288 (466)
                      .+...++++.++++++.++.+++++|++++..++.+++++||+|++.++.|......    +...|.++..++..|+++|
T Consensus        60 ~~~~~~l~~~la~~~~~~~~i~~~~G~~~~~~~l~~~~~~gd~v~~~~~~~~~~~~~----~~~~g~~~~~~~~~d~~~l  135 (360)
T TIGR00858        60 SPLHEELEEELAEWKGTEAALLFSSGYLANVGVISALVGKGDLILSDALNHASLIDG----CRLSGARVRRYRHNDVEHL  135 (360)
T ss_pred             cHHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHhCCCCCEEEEEccccHHHHHH----HHhcCCceEEecCCCHHHH
Confidence            367888999999999988899999999887778888899999999999999876533    3446778877777889999


Q ss_pred             HHhhcCC---CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-c--c------c-ccCCcEEEECC
Q 012296          289 EAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-K--A------L-SLGADLVLHSA  355 (466)
Q Consensus       289 e~ai~~~---~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~-~--~------l-~~gaDivv~S~  355 (466)
                      ++.+++.   ++++|++++++|++|...|+++|.++|+++|+++|+|+++..+... .  .      . ..+.|+++.|+
T Consensus       136 ~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~  215 (360)
T TIGR00858       136 ERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTL  215 (360)
T ss_pred             HHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEec
Confidence            9988642   3789999999999999999999999999999999999998643211 1  0      1 23678999999


Q ss_pred             ccccCccccceeEEEEeCHHHHHHHHHHHHH--hCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcCC
Q 012296          356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       356 sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~--~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~L~~~p  428 (466)
                      ||+|++.    ||++++++++++.++.....  .+...++.....+...+   +....+.++..++++.+.+.|++++
T Consensus       216 sK~~~~~----gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~  289 (360)
T TIGR00858       216 SKALGSY----GAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEALG  289 (360)
T ss_pred             hhhhhcc----CcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999875    48999999998887654332  22333444333322333   3334456778889999999998763

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.85  E-value=1e-19  Score=189.07  Aligned_cols=210  Identities=17%  Similarity=0.197  Sum_probs=152.1

Q ss_pred             HHHHHHHHHhhh----C----C--CcEEEeCCHH-HHHHHHHHHHccCCCE--EEEcCCCCcchHHHHHhhcccCCceEE
Q 012296          212 TVVVEEKMSALE----G----A--ESTVIMASGM-SASTVMLLALVPAGGH--IVTTTDCYRKTRIFIETVLPKMGITAT  278 (466)
Q Consensus       212 ~~~Lee~LA~l~----g----~--e~~l~~sSGs-~Ai~~al~all~~Gd~--Vlv~~~~y~~t~~~~~~~l~~~Gi~v~  278 (466)
                      ..+|++.+|+++    |    .  ++.+++++|+ +++..++.+++++||+  |++++|.|......    +...|+++.
T Consensus        66 ~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~----~~~~g~~~~  141 (393)
T TIGR03538        66 LPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGA----ALLAGAEPY  141 (393)
T ss_pred             CHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHH----HHhcCCeEE
Confidence            456777777765    2    2  2467777776 8999999999999986  99999999875533    345677766


Q ss_pred             EeCC-------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc---cc--
Q 012296          279 VIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---KA--  343 (466)
Q Consensus       279 ~vd~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~---~~--  343 (466)
                      .++.       .|++++++++.+ ++++|++++|+||||.+++   +++|+++|+++|++||+||+|......   .+  
T Consensus       142 ~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~  220 (393)
T TIGR03538       142 FLNCTAENGFLPDFDAVPESVWR-RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAG  220 (393)
T ss_pred             EeeccccCCCCCCHHHHHHHHhh-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcC
Confidence            6642       267889888876 4899999999999999997   678888999999999999998643321   01  


Q ss_pred             -c----cc-----CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHH
Q 012296          344 -L----SL-----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRV  410 (466)
Q Consensus       344 -l----~~-----gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~  410 (466)
                       .    ..     ...+++.|+||.++.+| .+.||+++++++++++.......+...+......+...+   +.+....
T Consensus       221 ~~~~~~~~~~~~~~~vi~i~S~SK~~~~~G-lRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  299 (393)
T TIGR03538       221 LLQAAAQLGRDDFRRCLVFHSLSKRSNLPG-LRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWNDEQHVRENR  299 (393)
T ss_pred             HHHhcccccccccccEEEEecchhhcCCcc-cceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhcChHHHHHHH
Confidence             0    11     23489999999988887 458999999999998887766555444544444333333   2344445


Q ss_pred             HHHHHHHHHHHHHHHcC
Q 012296          411 QQQNSTALRMAKILEAH  427 (466)
Q Consensus       411 ~~~~~na~~La~~L~~~  427 (466)
                      +...++.+.+.+.|+++
T Consensus       300 ~~~~~~~~~~~~~L~~~  316 (393)
T TIGR03538       300 ALYREKFAAVLEILGQV  316 (393)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            55677777788888764

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.85  E-value=2.4e-20  Score=191.15  Aligned_cols=214  Identities=15%  Similarity=0.197  Sum_probs=157.9

Q ss_pred             CCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          206 RYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      +++.+...++++.++++++. .+.+++++|+ +++..++.+++++||+|++++|.|+.....    +...|.++..++. 
T Consensus        60 ~~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~~~----~~~~g~~~~~~~~~  135 (359)
T PRK03158         60 LYPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRHN----AIIEGAEVREVPLK  135 (359)
T ss_pred             cCCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHH----HHHcCCeEEEEecC
Confidence            34556678899999999987 3456666666 899888889999999999999999875432    3345777666643 


Q ss_pred             ---CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHh--cCCEEEEeCCCCCCCcc----ccc----ccCCc
Q 012296          283 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ----KAL----SLGAD  349 (466)
Q Consensus       283 ---~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~--~gillIvDea~a~~~~~----~~l----~~gaD  349 (466)
                         .|+++++++++++ +++|++++|+||||.+.+.++|.++++.  +|+++|+||+|......    ...    ..+..
T Consensus       136 ~~~~d~~~l~~~~~~~-~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~v  214 (359)
T PRK03158        136 DGGHDLEAMLKAIDEQ-TKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENL  214 (359)
T ss_pred             CCCcCHHHHHHhcCCC-CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCE
Confidence               3789999888774 8999999999999999999999999887  59999999998653321    111    23456


Q ss_pred             EEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHc
Q 012296          350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       350 ivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~L~~  426 (466)
                      +++.|+||.++.+| ++.||++++++++++++..+..++  .+.....++...+   +.++...+...++++.+.+.|++
T Consensus       215 i~~~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  291 (359)
T PRK03158        215 IVLRTFSKAYGLAA-LRVGYGIASEELIEKLNIARPPFN--TTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKE  291 (359)
T ss_pred             EEEEechHhhcCcc-hhhehhcCCHHHHHHHHHhcCCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999877 457999999999998887665433  3444433333333   33444444556667778888877


Q ss_pred             C
Q 012296          427 H  427 (466)
Q Consensus       427 ~  427 (466)
                      +
T Consensus       292 ~  292 (359)
T PRK03158        292 Y  292 (359)
T ss_pred             C
Confidence            6

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.85  E-value=2.6e-19  Score=182.11  Aligned_cols=213  Identities=19%  Similarity=0.209  Sum_probs=167.9

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC----
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----  282 (466)
                      ..+...++|+.+++++|.+++++++||++|+..++.++ +++||+|+++.+.|.++...+    ...|+++.+++.    
T Consensus        16 ~~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~   91 (352)
T cd00616          16 LGPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAI----LLLGATPVFVDIDPDT   91 (352)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHH----HHcCCeEEEEecCCCc
Confidence            46889999999999999988999999999999999988 689999999999999865433    346788777653    


Q ss_pred             --CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc--ccccCCcEEEECCc--
Q 012296          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK--ALSLGADLVLHSAT--  356 (466)
Q Consensus       283 --~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~--~l~~gaDivv~S~s--  356 (466)
                        .|+++++++++++ +++|+++   |++|.+.|+++|.++|+++|+++|+|++++.+....  ......|+.+.|++  
T Consensus        92 ~~~d~~~l~~~i~~~-~~~v~~~---~~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~  167 (352)
T cd00616          92 YNIDPELIEAAITPR-TKAIIPV---HLYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPT  167 (352)
T ss_pred             CCcCHHHHHHhcCcC-CeEEEEE---CCCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCCC
Confidence              2689999999764 8999975   468999999999999999999999999987553322  12223588999976  


Q ss_pred             cccCccccceeEEEEeC-HHHHHHHHHHHHH---------------hCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 012296          357 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHV---------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRM  420 (466)
Q Consensus       357 K~lgg~gdv~gG~ivg~-~eli~~l~~~~~~---------------~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~L  420 (466)
                      |+++++   .||+++.+ +++.++++.....               +...+++..+.+.+..++.++.+.++..++++.+
T Consensus       168 K~~~~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~  244 (352)
T cd00616         168 KNLTTG---EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEIIARRREIAERY  244 (352)
T ss_pred             CCCccc---CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999654   36777765 5787777654321               1123556777777777888888888899999999


Q ss_pred             HHHHHcCCCeE
Q 012296          421 AKILEAHPKVK  431 (466)
Q Consensus       421 a~~L~~~p~V~  431 (466)
                      .+.|++.|+++
T Consensus       245 ~~~L~~~~g~~  255 (352)
T cd00616         245 KELLADLPGIR  255 (352)
T ss_pred             HHHhcCCCCcc
Confidence            99999988775

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.85  E-value=7.3e-20  Score=192.61  Aligned_cols=209  Identities=15%  Similarity=0.153  Sum_probs=154.1

Q ss_pred             HHHHHHHHHhhhC----CCcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC----
Q 012296          212 TVVVEEKMSALEG----AESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (466)
Q Consensus       212 ~~~Lee~LA~l~g----~e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----  282 (466)
                      ...|++.++++++    .++.+++++|+ +++..++.+++++||.|++++|+|+.....    ++..|+++..++.    
T Consensus       123 ~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~~~~g  198 (431)
T PRK15481        123 SPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINM----LRYAGFSASPVSVDAEG  198 (431)
T ss_pred             CHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHH----HHHcCCeEEeeccCCCC
Confidence            3567788888765    23467677776 999999999999999999999999886543    4456777666643    


Q ss_pred             CCHHHHHHhhcCCCceEEEEe-CCCCCCcccccHH---HHHHHHHhc-CCEEEEeCCCCCCCc---cccc--ccCCcEEE
Q 012296          283 ADMEGLEAALNNNNVSLFFTE-SPTNPFLRCVDVK---LVSDLCHKK-GAIVCIDGTFATPLN---QKAL--SLGADLVL  352 (466)
Q Consensus       283 ~Dle~Le~ai~~~~tklV~le-sP~NPtG~v~dl~---~Ia~la~~~-gillIvDea~a~~~~---~~~l--~~gaDivv  352 (466)
                      .|+++|+++++++ +++++++ +|+||||.+++.+   +|.++|+++ +++||+||+|.....   ...+  .....+++
T Consensus       199 ~~~~~l~~~~~~~-~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~  277 (431)
T PRK15481        199 MQPEKLERALAQG-ARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALI  277 (431)
T ss_pred             CCHHHHHHHHhcC-CCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEE
Confidence            4789999998764 8998887 9999999999865   899999999 999999999864321   1111  12345899


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHc
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK------TLHLRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~------tl~~R~~~~~~na~~La~~L~~  426 (466)
                      .|+||.|+ +| .+.||+++++++++.+...........+.....++...++      .+....+...++++.+.+.|++
T Consensus       278 ~SfSK~~~-~G-lRiG~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~  355 (431)
T PRK15481        278 RSVSKALG-PD-LRLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQ  355 (431)
T ss_pred             eeeccccC-CC-ceeEEEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999 76 4688999999999988765544333344444444333332      2444556677888888899887


Q ss_pred             C
Q 012296          427 H  427 (466)
Q Consensus       427 ~  427 (466)
                      +
T Consensus       356 ~  356 (431)
T PRK15481        356 Y  356 (431)
T ss_pred             c
Confidence            5

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.85  E-value=2.7e-19  Score=183.87  Aligned_cols=213  Identities=21%  Similarity=0.203  Sum_probs=161.6

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHH
Q 012296          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME  286 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle  286 (466)
                      +..+..+++++.++++++.++.+++++|++++..++..++++||+|+++++.|+.+...    +...|.++..++..|++
T Consensus        81 g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~----~~~~g~~~~~~~~~d~~  156 (385)
T PRK05958         81 GNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLTALAGKGDLIVSDKLNHASLIDG----ARLSRARVRRYPHNDVD  156 (385)
T ss_pred             CCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCCCCCEEEEeCccCHHHHHH----HHhcCCceEEeCCCCHH
Confidence            34677899999999999988899999999888888888899999999999999876543    33457777778777899


Q ss_pred             HHHHhhcCC--CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-c--------ccc-cCCcEEEEC
Q 012296          287 GLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-K--------ALS-LGADLVLHS  354 (466)
Q Consensus       287 ~Le~ai~~~--~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~-~--------~l~-~gaDivv~S  354 (466)
                      ++++.+++.  +++++++++++|++|.+.++++|.++|+++|+++|+|++++.+... .        .+. ...++++.|
T Consensus       157 ~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s  236 (385)
T PRK05958        157 ALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGT  236 (385)
T ss_pred             HHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEe
Confidence            999998653  3678888899999999999999999999999999999998644221 0        111 224588999


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--~~G~~lsp~~a~l~l~~L~tl---~~R~~~~~~na~~La~~L~~~  427 (466)
                      ++|++++.    ||++++++++++.+.....  ..+...++..+.++...++.+   ..+.++..++++.+.+.|++.
T Consensus       237 ~sK~~~~~----Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~  310 (385)
T PRK05958        237 LGKALGSS----GAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRAL  310 (385)
T ss_pred             chhhcccC----CcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            99999865    4888899988887754322  222334455444444444433   345667778888999999875

>PLN02187 rooty/superroot1

Probab=99.85  E-value=2.1e-19  Score=191.21  Aligned_cols=216  Identities=13%  Similarity=0.140  Sum_probs=153.6

Q ss_pred             chhHHHHHHHHHhhhC------C-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          209 NPTTVVVEEKMSALEG------A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       209 np~~~~Lee~LA~l~g------~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      ......|++.+|++++      . .+.|++++|+ +++..++.+++++||+|++++|+|+....    .+...|+++..+
T Consensus       107 ~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~----~~~~~g~~~~~~  182 (462)
T PLN02187        107 GAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDA----RAAYSGLEVRKF  182 (462)
T ss_pred             CCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHH----HHHHcCCEEEEE
Confidence            3446678888888763      2 3455556555 99999999999999999999999998543    234567777665


Q ss_pred             CC-------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----cc-c
Q 012296          281 DP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----AL-S  345 (466)
Q Consensus       281 d~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----~l-~  345 (466)
                      +.       .|+++|+++++++ +++|++++|+||||.+++   +++|+++|+++|++||+||+|....+..    ++ .
T Consensus       183 ~l~~~~~~~~d~~~l~~~~~~~-~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~  261 (462)
T PLN02187        183 DLLPEKEWEIDLEGIEAIADEN-TVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGK  261 (462)
T ss_pred             eCccccCCccCHHHHHHhcCCC-cEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHH
Confidence            42       3789999998775 899999999999999987   7788999999999999999987633211    11 1


Q ss_pred             c---CCcEEEECCccccCccccceeEEEEe-CHH----HHHHHHHHHHHhCC--CchHHHHHHHHHhh-----HHHHHHH
Q 012296          346 L---GADLVLHSATKFIGGHNDVLAGSISG-SGK----LVTQIRNLHHVLGG--ALNPNAAYLIIRGM-----KTLHLRV  410 (466)
Q Consensus       346 ~---gaDivv~S~sK~lgg~gdv~gG~ivg-~~e----li~~l~~~~~~~G~--~lsp~~a~l~l~~L-----~tl~~R~  410 (466)
                      +   ..-+++.|+||.|+.+|. +.||+++ +++    +++.+...+..++.  ..+.+...++...+     +.+....
T Consensus       262 ~~~~~~vi~l~SfSK~f~~pGl-RiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~  340 (462)
T PLN02187        262 FASIVPVLTLAGISKGWVVPGW-KIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKN  340 (462)
T ss_pred             hccCCcEEEEecchhhcCCccc-eeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHH
Confidence            1   124888999999999985 5788887 343    33455555554433  22333333322222     3456666


Q ss_pred             HHHHHHHHHHHHHHHcCCCe
Q 012296          411 QQQNSTALRMAKILEAHPKV  430 (466)
Q Consensus       411 ~~~~~na~~La~~L~~~p~V  430 (466)
                      +...++++.+.+.|+++|.+
T Consensus       341 ~~l~~~r~~l~~~L~~~~~~  360 (462)
T PLN02187        341 KILKHNVDLVCDRLKDIPCV  360 (462)
T ss_pred             HHHHHHHHHHHHHHhhCCCC
Confidence            77788899999999987654

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.85  E-value=7.2e-20  Score=191.35  Aligned_cols=210  Identities=21%  Similarity=0.244  Sum_probs=158.0

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc--CCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHH
Q 012296          210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~--~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~  287 (466)
                      +...+||++||+++|.+++++++||++|+..++..+..  +||.|+++...|.+...    .+...|.++..+...|.+.
T Consensus        91 ~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~----~~~~~g~~~~~~~~~d~~~  166 (410)
T PRK13392         91 HPHVLLERELADLHGKESALLFTSGYVSNDAALSTLGKLLPGCVILSDALNHASMIE----GIRRSGAEKQVFRHNDLAD  166 (410)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHH----HHHHcCCeEEEEeCCCHHH
Confidence            35789999999999999999999999998888877653  89988887777766543    2344677777666667777


Q ss_pred             HHHhhc---CCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-c--------ccccCCcEEEECC
Q 012296          288 LEAALN---NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-K--------ALSLGADLVLHSA  355 (466)
Q Consensus       288 Le~ai~---~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~-~--------~l~~gaDivv~S~  355 (466)
                      +++.++   ..++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+... .        ......|+++.|+
T Consensus       167 l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tl  246 (410)
T PRK13392        167 LEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTL  246 (410)
T ss_pred             HHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEC
Confidence            766664   224899999999999999999999999999999999999998744321 1        1112468999999


Q ss_pred             ccccCccccceeEEEEeCHHHHHHHHHHHHH--hCCCchHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRG---MKTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       356 sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~--~G~~lsp~~a~l~l~~---L~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      +|+|++.    ||++++++++++.+++....  ++...++..++.+...   ++....+.+++.++++++.+.|++.
T Consensus       247 sK~~g~~----GG~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~  319 (410)
T PRK13392        247 AKAFGCL----GGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN  319 (410)
T ss_pred             hHhhhcc----cchhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            9999876    48999999999988776543  3344455444443333   3444445566788889999999875

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.85  E-value=2.8e-20  Score=190.79  Aligned_cols=218  Identities=17%  Similarity=0.215  Sum_probs=159.9

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCC-CEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~G-d~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      +.+|+++...+|++.+|+++|. .+.|++++|+ +++..++.+++++| |+|++++|.|....    ..++..|+++..+
T Consensus        54 ~~~Yp~~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~----~~~~~~g~~v~~v  129 (354)
T PRK04635         54 LNRYPECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYA----ISAETFNVGVKAL  129 (354)
T ss_pred             hccCCCCCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH----HHHHHcCCEEEEE
Confidence            5677777789999999999987 4566677776 99999999999998 89999999998643    2345568887776


Q ss_pred             CC-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHh-cCCEEEEeCCCCCCCcccc----c-ccCCc
Q 012296          281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKA----L-SLGAD  349 (466)
Q Consensus       281 d~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~-~gillIvDea~a~~~~~~~----l-~~gaD  349 (466)
                      +.     .|++.++ .+ + ++++|++++|+||||.+.+.+++.++++. .+++||+||+|........    . ....-
T Consensus       130 ~~~~~~~~~~~~l~-~~-~-~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~  206 (354)
T PRK04635        130 PLTADYQLPLDYIE-QL-D-GAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNL  206 (354)
T ss_pred             ecCCCCCCCHHHHH-hc-c-CCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCE
Confidence            53     2567776 34 3 48999999999999999999999999876 3799999999865432111    1 11234


Q ss_pred             EEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHH
Q 012296          350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR-----GMKTLHLRVQQQNSTALRMAKIL  424 (466)
Q Consensus       350 ivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~-----~L~tl~~R~~~~~~na~~La~~L  424 (466)
                      +++.|+||+++.+|. +.|++++++++++.+......++.  +.....++..     +.+.+..++++..++++.+.+.|
T Consensus       207 iv~~S~SK~~~l~Gl-RlG~~i~~~~~~~~l~~~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L  283 (354)
T PRK04635        207 VVLRTLSKAFALAGA-RCGFTLANEELIEILMRVIAPYPV--PLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAAL  283 (354)
T ss_pred             EEEechHHHhhhhHH-HHhhhhCCHHHHHHHHhhcCCCCC--CHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999987774 479999999999888765433332  2222222222     23455566677788889999999


Q ss_pred             HcCCCeE
Q 012296          425 EAHPKVK  431 (466)
Q Consensus       425 ~~~p~V~  431 (466)
                      ++++++.
T Consensus       284 ~~~~~~~  290 (354)
T PRK04635        284 SMYGGAK  290 (354)
T ss_pred             HhCCCce
Confidence            9887653

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.85  E-value=4.6e-20  Score=189.47  Aligned_cols=216  Identities=13%  Similarity=0.213  Sum_probs=158.2

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          204 YGRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~e-~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      +.+|+.+....|++.+|++++.+ +.+++++|+ +++..++.+++++||+|++++|.|.....    .....|.++..++
T Consensus        61 ~~~y~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~~----~~~~~g~~~~~~~  136 (367)
T PRK02731         61 LHRYPDGSGFELKAALAEKFGVDPERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPI----AAQAVGAKPVEVP  136 (367)
T ss_pred             hcCCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEecCCHHHHHH----HHHHcCCeEEEec
Confidence            34555556678999999999873 567777777 77888888889999999999999965432    2345678877765


Q ss_pred             C----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhc--CCEEEEeCCCCCCCcc-------cccc-cC
Q 012296          282 P----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLNQ-------KALS-LG  347 (466)
Q Consensus       282 ~----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~--gillIvDea~a~~~~~-------~~l~-~g  347 (466)
                      .    .|+++++++++++ +++|++++|+||||.+.+.++|.++++..  |+++|+|++|......       .... ..
T Consensus       137 ~~~~~~~~~~l~~~~~~~-~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~  215 (367)
T PRK02731        137 AKDYGHDLDAMLAAVTPR-TRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFP  215 (367)
T ss_pred             ccCCCCCHHHHHHHhCCC-CcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcC
Confidence            3    3789999999864 89999999999999999999999999874  8999999997643221       1111 12


Q ss_pred             CcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHH
Q 012296          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKIL  424 (466)
Q Consensus       348 aDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~L  424 (466)
                      ..+++.|++|.++.+| .+.||++++++++++++.....++.  +....+++...+   +.++...+...++.+.+.+.|
T Consensus       216 ~~i~~~S~SK~~g~~G-~RiG~l~~~~~~~~~l~~~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L  292 (367)
T PRK02731        216 NVVVTRTFSKAYGLAG-LRVGYGIAPPEIIDALNRVRQPFNV--NSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFL  292 (367)
T ss_pred             CEEEEeeehHhhcCcc-cceeeeeCCHHHHHHHHHccCCCCC--CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3588899999998776 4579999999999888776543332  333344433333   334444455566777888888


Q ss_pred             HcC
Q 012296          425 EAH  427 (466)
Q Consensus       425 ~~~  427 (466)
                      +++
T Consensus       293 ~~~  295 (367)
T PRK02731        293 AEL  295 (367)
T ss_pred             HHC
Confidence            876

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.85  E-value=1.2e-19  Score=188.87  Aligned_cols=210  Identities=13%  Similarity=0.143  Sum_probs=150.3

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          212 TVVVEEKMSALE----GA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~----e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ...|++.+++++    |.    ++.+++++|+ +++..++.+++++||+|++++|+|+.....+    ...|+++..++.
T Consensus        75 ~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~v~~  150 (394)
T PRK05942         75 TASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGP----LIAGAQIYPIIL  150 (394)
T ss_pred             CHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHH----HHcCCEEEEeec
Confidence            346777777765    42    3346666665 9999999999999999999999999865433    345777666532


Q ss_pred             -------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----cc---cc
Q 012296          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA---LS  345 (466)
Q Consensus       283 -------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~~---l~  345 (466)
                             .|++++++.+++ ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|......    .+   +.
T Consensus       151 ~~~~~~~~d~~~l~~~~~~-~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~  229 (394)
T PRK05942        151 KPENDWLIDLSSIPEEVAQ-QAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIP  229 (394)
T ss_pred             CCccCCccCHHHHHHhccc-cceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCC
Confidence                   378999998876 4999999999999999997   778899999999999999997643211    11   11


Q ss_pred             --cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHHHH
Q 012296          346 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALR  419 (466)
Q Consensus       346 --~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~----tl~~R~~~~~~na~~  419 (466)
                        .+..+++.|+||.|+.+| ++.||+++++++++.++......+...+.....++...++    .+....++..++.+.
T Consensus       230 ~~~~~~i~~~SfSK~~~~~G-lRiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  308 (394)
T PRK05942        230 GAKDIGVEFHTLSKTYNMAG-WRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDF  308 (394)
T ss_pred             CccccEEEEecchhccCChh-hheeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence              123578899999998777 4589999999999999877664443333333333232332    233344555667777


Q ss_pred             HHHHHHcC
Q 012296          420 MAKILEAH  427 (466)
Q Consensus       420 La~~L~~~  427 (466)
                      +.+.|+++
T Consensus       309 ~~~~L~~~  316 (394)
T PRK05942        309 LIQGLGEL  316 (394)
T ss_pred             HHHHHHHC
Confidence            88888765

>PRK07337 aminotransferase; Validated

Probab=99.85  E-value=2.3e-19  Score=186.10  Aligned_cols=210  Identities=20%  Similarity=0.221  Sum_probs=152.3

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          212 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~----e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      ...|++.+|+++    |.    ++.++++++++|+..++..++++||+|++++|+|+.....+    ...|.++..++. 
T Consensus        69 ~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~  144 (388)
T PRK07337         69 LAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFV----AAAEGRPVLVPSG  144 (388)
T ss_pred             CHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHH----HHcCCEEEEeecC
Confidence            567888888875    32    34444444559999999999999999999999999865443    334666655532 


Q ss_pred             ------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----cccccCCc
Q 012296          283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALSLGAD  349 (466)
Q Consensus       283 ------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~~l~~gaD  349 (466)
                            .|++++++.++++ +++|++++|+||||.+++   +++|+++|+++|+++|+|++|......    ....++.+
T Consensus       145 ~~~~~~~~~~~l~~~~~~~-~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  223 (388)
T PRK07337        145 PAERFQLTAADVEAAWGER-TRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDD  223 (388)
T ss_pred             CccCCcCCHHHHHhhcCcc-ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCC
Confidence                  3689999999874 899999999999999986   678889999999999999998753221    11223333


Q ss_pred             -EEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHH
Q 012296          350 -LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQQQNSTALRMAKI  423 (466)
Q Consensus       350 -ivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L-----~tl~~R~~~~~~na~~La~~  423 (466)
                       +++.|+||.++.+|. +.||+++++++++++.......+...+....+++...+     +.+....++..++++.+.+.
T Consensus       224 vi~~~S~SK~~~~~G~-RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~  302 (388)
T PRK07337        224 VITINSFSKYFNMTGW-RLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPA  302 (388)
T ss_pred             EEEEEechhhcCCchh-heeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH
Confidence             568899999998874 58999999999999888776555444444333333222     33444455667778888888


Q ss_pred             HHcC
Q 012296          424 LEAH  427 (466)
Q Consensus       424 L~~~  427 (466)
                      |+++
T Consensus       303 L~~~  306 (388)
T PRK07337        303 LESL  306 (388)
T ss_pred             HHhc
Confidence            8875

>PRK07550 hypothetical protein; Provisional

Probab=99.85  E-value=1.4e-19  Score=187.55  Aligned_cols=214  Identities=16%  Similarity=0.156  Sum_probs=154.5

Q ss_pred             hHHHHHHHHHhhh----CC---CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          211 TTVVVEEKMSALE----GA---ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       211 ~~~~Lee~LA~l~----g~---e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ...+|++.+++++    |.   .+.+++++|+ +|+..++.+++++||+|++++|+|.....    .++..|+++..++.
T Consensus        68 G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~  143 (386)
T PRK07550         68 GLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKM----WLDMLGIRPVYLPC  143 (386)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcCCEEEEEec
Confidence            3445666666554    32   3566677765 89999999999999999999999987653    34457887777653


Q ss_pred             -------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----cccc--
Q 012296          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS--  345 (466)
Q Consensus       283 -------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----~~l~--  345 (466)
                             .|+++++++++++ +++|++.+|+||||.+++   +++|+++|+++|+++|+|++|+.....     ....  
T Consensus       144 ~~~~~~~~~~~~l~~~~~~~-~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~  222 (386)
T PRK07550        144 DEGPGLLPDPAAAEALITPR-TRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADP  222 (386)
T ss_pred             CCCcCCCCCHHHHHHHhccc-CcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCC
Confidence                   1678899999874 899999999999999986   778999999999999999998643211     1111  


Q ss_pred             -c-CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH----HHHHHHHHHHHHHH
Q 012296          346 -L-GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALR  419 (466)
Q Consensus       346 -~-gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~t----l~~R~~~~~~na~~  419 (466)
                       . ...+++.|+||.++.+| .+.|+++++++++++++......+.+.+....+++...++.    +....++..++++.
T Consensus       223 ~~~~~~i~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  301 (386)
T PRK07550        223 DWDDTLVHLYSFSKSYALTG-HRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDA  301 (386)
T ss_pred             CccccEEEEecchhhccCcc-cceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence             1 13478999999998666 45899999999999888777655554555544444444332    22233456677888


Q ss_pred             HHHHHHcCCCe
Q 012296          420 MAKILEAHPKV  430 (466)
Q Consensus       420 La~~L~~~p~V  430 (466)
                      +.+.|++++++
T Consensus       302 l~~~L~~~~~~  312 (386)
T PRK07550        302 FRAVFARLPGW  312 (386)
T ss_pred             HHHHHHhCCCc
Confidence            88999876443

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.85  E-value=2.1e-20  Score=193.02  Aligned_cols=213  Identities=15%  Similarity=0.203  Sum_probs=156.5

Q ss_pred             CCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          206 RYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      +|+.+....|++.|+++++. .+.+++++|+ +++..++.+++++||+|++++|+|......    +...|+++..++. 
T Consensus        60 ~Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~~~----~~~~g~~v~~v~~~  135 (366)
T PRK01533         60 LYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHH----AIIEGCEVKEVALN  135 (366)
T ss_pred             cCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHHHH----HHHcCCEEEEeecC
Confidence            45566677899999999987 4567777777 899999999999999999999999875533    4456877776653 


Q ss_pred             ---CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHH---hcCCEEEEeCCCCCCCcc----cc---c-ccCC
Q 012296          283 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH---KKGAIVCIDGTFATPLNQ----KA---L-SLGA  348 (466)
Q Consensus       283 ---~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~---~~gillIvDea~a~~~~~----~~---l-~~ga  348 (466)
                         .|+++|+++++++ +++|++++|+||||.+++.+++.++++   +++ ++|+||+|......    ..   + ..+.
T Consensus       136 ~~~~d~~~l~~~~~~~-~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~  213 (366)
T PRK01533        136 NGVYDLDEISSVVDND-TKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKN  213 (366)
T ss_pred             CCCcCHHHHHHHhCcC-CcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCC
Confidence               4799999998774 899999999999999998776666554   444 67889997642211    11   1 1235


Q ss_pred             cEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILE  425 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~L~  425 (466)
                      .+++.|+||.|+.+|. +.||+++++++++++++.+..  ...+.....++...+   +.+....+...++++++.+.|+
T Consensus       214 vi~~~SfSK~~~l~Gl-RiG~~i~~~~~~~~l~~~~~~--~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~  290 (366)
T PRK01533        214 ILVLRTFSKAYGLASF-RVGYAVGHEELIEKLNVVRLP--FNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCK  290 (366)
T ss_pred             EEEEeCchHHhcChHH-HHhHHhCCHHHHHHHHHhcCC--CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999998884 479999999999998876532  344555444444443   3344445556677778888887


Q ss_pred             cC
Q 012296          426 AH  427 (466)
Q Consensus       426 ~~  427 (466)
                      .+
T Consensus       291 ~~  292 (366)
T PRK01533        291 EN  292 (366)
T ss_pred             hC
Confidence            65

>PRK07682 hypothetical protein; Validated

Probab=99.85  E-value=1.8e-19  Score=186.09  Aligned_cols=213  Identities=12%  Similarity=0.149  Sum_probs=154.2

Q ss_pred             chhHHHHHHHHHhhhC----C----CcEEEeCCH-HHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEE
Q 012296          209 NPTTVVVEEKMSALEG----A----ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (466)
Q Consensus       209 np~~~~Lee~LA~l~g----~----e~~l~~sSG-s~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~  279 (466)
                      .+....|++.++++++    .    ++.+++++| ++|+.+++.+++++||+|++++|+|+.....+    ...|.++..
T Consensus        56 ~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~  131 (378)
T PRK07682         56 NAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLV----TLAGGVPVP  131 (378)
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCchhhHHHH----HHcCCEEEE
Confidence            3456677777777663    2    334555555 59999999999999999999999998754333    334555544


Q ss_pred             eC-------CCCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc------c
Q 012296          280 ID-------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK------A  343 (466)
Q Consensus       280 vd-------~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~------~  343 (466)
                      ++       ..|+++++++++++ +++|++++|+||||.+++   +++|+++|+++++++|+|++|.......      .
T Consensus       132 ~~~~~~~~~~~d~~~l~~~~~~~-~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~  210 (378)
T PRK07682        132 VATTLENEFKVQPAQIEAAITAK-TKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFAS  210 (378)
T ss_pred             eecCCccCCCCCHHHHHhhcCcc-cEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhh
Confidence            43       23789999998774 899999999999999985   7889999999999999999987543211      1


Q ss_pred             c-c-cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHH
Q 012296          344 L-S-LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTA  417 (466)
Q Consensus       344 l-~-~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~na  417 (466)
                      + . ....+++.|+||.|+.+| .+.||+++++++++++...........+.....++...+    ..+....+...+++
T Consensus       211 ~~~~~~~~i~~~S~SK~~~~~G-lR~G~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~  289 (378)
T PRK07682        211 IKGMRERTILISGFSKGFAMTG-WRLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRR  289 (378)
T ss_pred             cccccCCEEEEecCcccccChh-hhhhhhhcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            1 1 134689999999998776 457999999999999887665433333444433333333    33445556677888


Q ss_pred             HHHHHHHHcC
Q 012296          418 LRMAKILEAH  427 (466)
Q Consensus       418 ~~La~~L~~~  427 (466)
                      +.+.+.|+++
T Consensus       290 ~~~~~~L~~~  299 (378)
T PRK07682        290 NFFVTSFNEI  299 (378)
T ss_pred             HHHHHHHHHC
Confidence            8899999876

>PLN02656 tyrosine transaminase

Probab=99.85  E-value=2.2e-19  Score=187.95  Aligned_cols=213  Identities=15%  Similarity=0.134  Sum_probs=151.4

Q ss_pred             hhHHHHHHHHHhhhC----C----CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          210 PTTVVVEEKMSALEG----A----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       210 p~~~~Lee~LA~l~g----~----e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ....+|++.++++++    .    +++++++++++|+..++.+++++||+|++++|.|+.....    ....|+++..++
T Consensus        73 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~i~  148 (409)
T PLN02656         73 VGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELC----AAFRHLEVRYVD  148 (409)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHH----HHHcCCEEEEEe
Confidence            345677788887763    1    3444444555999999999999999999999999864322    233577776664


Q ss_pred             C-------CCHHHHHHhhcCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCcc----ccc---
Q 012296          282 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL---  344 (466)
Q Consensus       282 ~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~---dl~~Ia~la~~~gillIvDea~a~~~~~----~~l---  344 (466)
                      .       .|+++++++++++ +++|++++|+||||.++   ++++|+++|+++|+++|+|++|......    .++   
T Consensus       149 ~~~~~~~~~d~~~l~~~~~~~-~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~  227 (409)
T PLN02656        149 LLPEKGWEVDLDAVEALADQN-TVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVF  227 (409)
T ss_pred             CCCcCCCCCCHHHHHHHhccC-ceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHh
Confidence            2       3788999988775 89999999999999997   5788999999999999999998753221    111   


Q ss_pred             -ccCCcEEEECCccccCccccceeEEEEe--------CHHHHHHHHHHHHHhCCCchHHHHHHHHHhh-----HHHHHHH
Q 012296          345 -SLGADLVLHSATKFIGGHNDVLAGSISG--------SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRV  410 (466)
Q Consensus       345 -~~gaDivv~S~sK~lgg~gdv~gG~ivg--------~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L-----~tl~~R~  410 (466)
                       .....+++.|+||.|+.+|. +.||+++        ++++++++.......++ .+....+++...+     +.+....
T Consensus       228 ~~~~~vi~~~SfSK~f~~pGl-RiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~q~a~~~~l~~~~~~~~~~~~  305 (409)
T PLN02656        228 GSIVPVLTLGSLSKRWIVPGW-RLGWFVTTDPSGSFRDPKIVERIKKYFDILGG-PATFIQAAVPTILEQTDESFFKKTI  305 (409)
T ss_pred             cccCcEEEEcccchhccCcce-eEEEEEEeCcccccccHHHHHHHHHHHhhhcC-CCHHHHHHHHHHHhcCcHHHHHHHH
Confidence             11235889999999999884 5788887        35788888776554432 2333333333333     2355555


Q ss_pred             HHHHHHHHHHHHHHHcCCC
Q 012296          411 QQQNSTALRMAKILEAHPK  429 (466)
Q Consensus       411 ~~~~~na~~La~~L~~~p~  429 (466)
                      ++..++++.+.+.|++++.
T Consensus       306 ~~~~~~r~~~~~~L~~~~~  324 (409)
T PLN02656        306 NILKQSSDICCDRIKEIPC  324 (409)
T ss_pred             HHHHHHHHHHHHHHhhCCC
Confidence            6677788888899987654

>PRK07777 aminotransferase; Validated

Probab=99.85  E-value=9.5e-19  Score=181.36  Aligned_cols=211  Identities=16%  Similarity=0.191  Sum_probs=148.4

Q ss_pred             hHHHHHHHHHhh----hCC----C-cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          211 TTVVVEEKMSAL----EGA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       211 ~~~~Lee~LA~l----~g~----e-~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ...+|++.++++    +|.    + +.+++++|++|+.+++.+++++||+|++..|.|+.....    +...|.++..++
T Consensus        62 g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~----~~~~g~~~~~~~  137 (387)
T PRK07777         62 GIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAV----IAMAGAHRVPVP  137 (387)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHH----HHHCCCEEEEee
Confidence            355677777664    454    2 345555556999999999999999999999999875533    333455554442


Q ss_pred             C--------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----ccc--
Q 012296          282 P--------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL--  344 (466)
Q Consensus       282 ~--------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~~l--  344 (466)
                      .        .|+++|+++++++ +++|++++|+||||.+++   +++|.++|+++++++|+|++|......    .++  
T Consensus       138 ~~~~~~~~~~d~~~l~~~~~~~-~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~  216 (387)
T PRK07777        138 LVPDGRGFALDLDALRAAVTPR-TRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLAT  216 (387)
T ss_pred             cCCccCCCcCCHHHHHHhcCcc-cEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhh
Confidence            1        4789999988774 899999999999999975   788999999999999999998642211    111  


Q ss_pred             ---ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCch-HH--HHHHHHH-hhHHHHHHHHHHHHHH
Q 012296          345 ---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN-PN--AAYLIIR-GMKTLHLRVQQQNSTA  417 (466)
Q Consensus       345 ---~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~ls-p~--~a~l~l~-~L~tl~~R~~~~~~na  417 (466)
                         ..+.++++.|+||.|+.+| .+.|++++++++++.+...........+ +.  .+..++. ..+.+....+...+++
T Consensus       217 ~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  295 (387)
T PRK07777        217 LPGMRERTVTISSAAKTFNVTG-WKIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKR  295 (387)
T ss_pred             CCCCcCcEEEEeechhhccCcC-ceeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence               1346799999999999776 4578999999999888776543332211 21  1111222 2234444456677888


Q ss_pred             HHHHHHHHcC
Q 012296          418 LRMAKILEAH  427 (466)
Q Consensus       418 ~~La~~L~~~  427 (466)
                      +.+.+.|+++
T Consensus       296 ~~l~~~L~~~  305 (387)
T PRK07777        296 DRLAAGLAEA  305 (387)
T ss_pred             HHHHHHHHhC
Confidence            8899999875

>PRK09105 putative aminotransferase; Provisional

Probab=99.85  E-value=8.6e-20  Score=188.68  Aligned_cols=213  Identities=18%  Similarity=0.203  Sum_probs=154.3

Q ss_pred             cCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ++|+.+...+|++.+++++|. .+.|++++|+ +++..++.+++++||+|++++|.|+....    .++..|+++..++.
T Consensus        73 ~~Y~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~~~~~----~~~~~g~~~~~v~~  148 (370)
T PRK09105         73 GRYDLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGWR----AADAQGAPVAKVPL  148 (370)
T ss_pred             cCCCCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHcCCCCEEEEeCCChHHHHH----HHHHcCCeEEEecC
Confidence            345556688999999999986 3456666665 99999999999999999999999987653    34456777766642


Q ss_pred             -----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHh--cCCEEEEeCCCCCCCcc-ccc---ccC-CcE
Q 012296          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ-KAL---SLG-ADL  350 (466)
Q Consensus       283 -----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~--~gillIvDea~a~~~~~-~~l---~~g-aDi  350 (466)
                           .|++++++. .+ ++++|++++|+||||.+.+.++|.++++.  +++++|+||+|...... ...   ... ..+
T Consensus       149 ~~~~~~d~~~l~~~-~~-~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi  226 (370)
T PRK09105        149 RADGAHDVKAMLAA-DP-NAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLI  226 (370)
T ss_pred             CCCCCCCHHHHHhc-CC-CCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEE
Confidence                 367888776 34 38999999999999999998888888754  48999999998532111 111   112 347


Q ss_pred             EEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI---IRGMKTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       351 vv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~---l~~L~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      ++.|+||.+|.+|. +.||++++++++++++...   ....+......+   +...+.++.+.++..++++.+.+.|+++
T Consensus       227 ~~~SfSK~~g~~Gl-RiG~~v~~~~~i~~l~~~~---~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~  302 (370)
T PRK09105        227 VLRTFSKLYGMAGM-RLGLAAARPDLLAKLARFG---HNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKK  302 (370)
T ss_pred             EEecccHhhcCCcc-ceeeeecCHHHHHHHHhcC---CCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            88999999998884 5799999999998887651   122232222222   3333445555667778888899999875

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.85  E-value=2.2e-19  Score=185.34  Aligned_cols=216  Identities=17%  Similarity=0.169  Sum_probs=162.6

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC
Q 012296          204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  283 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~  283 (466)
                      +.+...+..+++++++++++|.+..+++++|++++..++.+++++||.|+++++.|+.....+    ...|+++..++..
T Consensus        72 ~~~g~~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~----~~~g~~~~~~~~~  147 (385)
T TIGR01825        72 TIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGL----RLTKATKKIYKHA  147 (385)
T ss_pred             cccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCCCCCEEEEEccccHHHHHHH----HhcCCceEEeCCC
Confidence            334345778999999999999888899999999988888899999999999999998754332    3346777777777


Q ss_pred             CHHHHHHhhcCC---CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc---------cccccCCcEE
Q 012296          284 DMEGLEAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---------KALSLGADLV  351 (466)
Q Consensus       284 Dle~Le~ai~~~---~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~---------~~l~~gaDiv  351 (466)
                      |++++++.+++.   ++++|++++++|++|.+.|+++|.++|++||+++|+|++|..+...         -....+.|++
T Consensus       148 d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~  227 (385)
T TIGR01825       148 DMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQ  227 (385)
T ss_pred             CHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEE
Confidence            888888877542   4899999999999999999999999999999999999998654221         0123467899


Q ss_pred             EECCccccCccccceeEEEEeCHHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHc
Q 012296          352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       352 v~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--~~G~~lsp~~a~l~l~~L~tl---~~R~~~~~~na~~La~~L~~  426 (466)
                      +.|+||++++.    +|++++++++++.+.....  .++...++...+.+...++.+   ....++..++++.+.+.|++
T Consensus       228 ~~s~sK~~~~~----gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~  303 (385)
T TIGR01825       228 VGTLSKAIGVV----GGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGK  303 (385)
T ss_pred             EEeccHHhhcC----CCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999764    4899999999888875432  233333444333333444333   23456667788888888876


Q ss_pred             C
Q 012296          427 H  427 (466)
Q Consensus       427 ~  427 (466)
                      .
T Consensus       304 ~  304 (385)
T TIGR01825       304 L  304 (385)
T ss_pred             c
Confidence            4

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.85  E-value=2.3e-19  Score=185.33  Aligned_cols=212  Identities=17%  Similarity=0.174  Sum_probs=160.2

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHH
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~L  288 (466)
                      .+..+++++.+++++|.++.+++++|++++..++.+++++||+|+++++.|++....+    ...+.++..++..|++++
T Consensus        86 ~~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~~l  161 (397)
T PRK06939         86 QDLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGV----RLCKAKRYRYANNDMADL  161 (397)
T ss_pred             cHHHHHHHHHHHHHhCCCcEEEEcChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHH----HhcCCceEEeCCCCHHHH
Confidence            3567899999999999888999999999999999999999999999999998865433    334556666666788998


Q ss_pred             HHhhcC---C--CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc---------ccccCCcEEEEC
Q 012296          289 EAALNN---N--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------ALSLGADLVLHS  354 (466)
Q Consensus       289 e~ai~~---~--~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~---------~l~~gaDivv~S  354 (466)
                      ++.+++   .  ++++|++++..|++|.+.++++|.++|+++|++||+|++|..+....         .+..+.|+++.|
T Consensus       162 ~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S  241 (397)
T PRK06939        162 EAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGT  241 (397)
T ss_pred             HHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEE
Confidence            888763   1  47899988889999999999999999999999999999986432111         111246899999


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--~~G~~lsp~~a~l~l~~L~tl---~~R~~~~~~na~~La~~L~~~  427 (466)
                      +||+++|+   ++||+++++++++.++....  .+++...+..+..++..++.+   ..+.++..++++.+.+.|+++
T Consensus       242 ~sK~~~g~---r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  316 (397)
T PRK06939        242 LGKALGGA---SGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAA  316 (397)
T ss_pred             CHHHhCcc---CceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            99999654   47999999999988876432  223333443333333334333   345566778888888888875

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.84  E-value=6.6e-20  Score=188.79  Aligned_cols=217  Identities=18%  Similarity=0.161  Sum_probs=159.6

Q ss_pred             ccCCCchhHHHHHHHHHhhh----C--C-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCc
Q 012296          204 YGRYGNPTTVVVEEKMSALE----G--A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  275 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~----g--~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi  275 (466)
                      +.+|+++....|++.+++++    |  . .+.|++++|+ +++..++.+++++||.|+++.|+|......    ....|+
T Consensus        59 ~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~----~~~~g~  134 (368)
T PRK03317         59 LNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGGPGRTALGFVPSYSMHPII----ARGTHT  134 (368)
T ss_pred             hccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHH----HHhcCC
Confidence            34555666778999999987    3  2 3567777777 899999999999999999999999875533    334566


Q ss_pred             eEEEeC-----CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc---ccc---
Q 012296          276 TATVID-----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---KAL---  344 (466)
Q Consensus       276 ~v~~vd-----~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~---~~l---  344 (466)
                      ++..++     ..|++++++++++.++++|++++|+||||.+.+.+++.++++..++++|+||+|......   ...   
T Consensus       135 ~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~  214 (368)
T PRK03317        135 EWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLL  214 (368)
T ss_pred             eeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHH
Confidence            655443     337899999987545899999999999999999999999999999999999998743211   111   


Q ss_pred             c-cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHh---hHHHHHHHHHHHHHHHHH
Q 012296          345 S-LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG---MKTLHLRVQQQNSTALRM  420 (466)
Q Consensus       345 ~-~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~---L~tl~~R~~~~~~na~~L  420 (466)
                      . ....+++.|+||.+|.+| ++.|++++++++++.++..+..+  ..++..+.++...   .+.+..++++..++++.+
T Consensus       215 ~~~~~~i~~~SfSK~~g~~G-lRiG~~~~~~~~~~~l~~~~~~~--~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l  291 (368)
T PRK03317        215 PEYPRLVVSRTMSKAFAFAG-GRLGYLAAAPAVVDALRLVRLPY--HLSAVTQAAARAALRHADELLASVAALRAERDRV  291 (368)
T ss_pred             HhCCCEEEEEechhhhccch-hhhhhhhCCHHHHHHHHhcCCCC--CCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence            1 123478889999999776 46799999999999887655333  3344444333333   344445556667778888


Q ss_pred             HHHHHcC
Q 012296          421 AKILEAH  427 (466)
Q Consensus       421 a~~L~~~  427 (466)
                      .+.|+++
T Consensus       292 ~~~L~~~  298 (368)
T PRK03317        292 VAWLREL  298 (368)
T ss_pred             HHHHHHC
Confidence            8899876

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.84  E-value=1.7e-19  Score=183.55  Aligned_cols=205  Identities=19%  Similarity=0.237  Sum_probs=147.3

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCH
Q 012296          207 YGNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM  285 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dl  285 (466)
                      |+.+. ..|++.|++.++.++ |++++|+ +++.+++  .+.+||+|++++|+|+....    .++..|+++..++.   
T Consensus        47 yp~~~-~~Lr~~ia~~~~~~~-I~it~Gs~~al~~~~--~~~~gd~v~v~~P~y~~~~~----~~~~~g~~~~~v~~---  115 (330)
T PRK05664         47 LPETD-DGLEAAARAYYGAPQ-LLPVAGSQAAIQALP--RLRAPGRVGVLSPCYAEHAH----AWRRAGHQVRELDE---  115 (330)
T ss_pred             CCCCh-HHHHHHHHHHhCCCC-EEECcCHHHHHHHHH--HccCCCEEEEcCCChHHHHH----HHHHcCCeEEEech---
Confidence            44444 789999999999764 5566666 8887765  45799999999999988653    44567888887764   


Q ss_pred             HHHHHhhcCCCceEEEEeCCCCCCcccccH---HHHHHHHHhcCCEEEEeCCCCCCCcccc---c-ccCCcEEEECCccc
Q 012296          286 EGLEAALNNNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQKA---L-SLGADLVLHSATKF  358 (466)
Q Consensus       286 e~Le~ai~~~~tklV~lesP~NPtG~v~dl---~~Ia~la~~~gillIvDea~a~~~~~~~---l-~~gaDivv~S~sK~  358 (466)
                      ++++++++  +++++++++|+||||.+++.   ++|+++|+++|+++|+||+|.......+   + ....-+++.|+||.
T Consensus       116 ~~~~~~~~--~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~  193 (330)
T PRK05664        116 AEVEAALD--SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKF  193 (330)
T ss_pred             hhHhhhhc--CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeecccc
Confidence            45666664  37899999999999999975   5566667889999999999865422111   1 11234889999999


Q ss_pred             cCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          359 IGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       359 lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      ++.+| ++.||+++++++++.+......++  .+....+++...+   .......++..++++.+.+.|+++
T Consensus       194 ~gl~G-lRiG~~v~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~  262 (330)
T PRK05664        194 FGLAG-ARLGFVLAEPALLRALAELLGPWT--VSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRH  262 (330)
T ss_pred             ccCCC-cceEEEEeCHHHHHHHHHhcCCCC--CCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            99887 458999999999998887654332  2333333333333   334444566677888999999876

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.84  E-value=2.7e-19  Score=186.48  Aligned_cols=211  Identities=23%  Similarity=0.246  Sum_probs=158.0

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc--CCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHH
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME  286 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~--~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle  286 (466)
                      ++...+|++.|++++|.+.+++++||++|+..++..+..  +|+.|+.+...|......    +...|+++..++..|++
T Consensus        89 ~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~----~~~~g~~~~~~~~~d~~  164 (402)
T TIGR01821        89 NIPHVELEAELADLHGKESALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEG----IRHSGAEKFIFRHNDVA  164 (402)
T ss_pred             cHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHH----HHHcCCeEEEECCCCHH
Confidence            677899999999999998999999999999999887765  677777665556544332    33456776666677888


Q ss_pred             HHHHhhc---CCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc---------ccccCCcEEEEC
Q 012296          287 GLEAALN---NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------ALSLGADLVLHS  354 (466)
Q Consensus       287 ~Le~ai~---~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~---------~l~~gaDivv~S  354 (466)
                      ++++.++   +.++++|++|+|+||+|.+.|+++|.++|+++|+++|+|++++.+....         ......|+++.|
T Consensus       165 ~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t  244 (402)
T TIGR01821       165 HLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGT  244 (402)
T ss_pred             HHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEe
Confidence            8888775   2248999999999999999999999999999999999999977432210         011236899999


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHHHHH--hCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~--~G~~lsp~~a~l~l~~L~tl---~~R~~~~~~na~~La~~L~~~  427 (466)
                      ++|.+++.    ||++++++++++.++.....  +....++..+..++..++.+   ..+.+++.++++++.+.|+++
T Consensus       245 ~sKa~g~~----GG~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~  318 (402)
T TIGR01821       245 LAKAFGVV----GGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL  318 (402)
T ss_pred             chhhhccC----CceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            99999976    48999999999888754432  23445665555555555443   334455668888999999875

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PLN02368 alanine transaminase

Probab=99.84  E-value=2.9e-19  Score=187.16  Aligned_cols=214  Identities=14%  Similarity=0.157  Sum_probs=150.8

Q ss_pred             HHHHHHHHhhh----CC---CcEEEeCCHH-HHHHHHHHHHc-cCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC--
Q 012296          213 VVVEEKMSALE----GA---ESTVIMASGM-SASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--  281 (466)
Q Consensus       213 ~~Lee~LA~l~----g~---e~~l~~sSGs-~Ai~~al~all-~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd--  281 (466)
                      ..|++.|++++    |.   .+.|++++|+ +++..++.+++ ++||.|++++|+|+.....+    ...|.++..++  
T Consensus       110 ~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~----~~~g~~~v~v~~~  185 (407)
T PLN02368        110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATI----SLLGGTLVPYYLE  185 (407)
T ss_pred             HHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHH----HHcCCEEEEEecc
Confidence            46777777665    53   3466677776 89999999887 79999999999999866443    34566655553  


Q ss_pred             -----CCCHHHHHHhhcC-----CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc-----c
Q 012296          282 -----PADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-----A  343 (466)
Q Consensus       282 -----~~Dle~Le~ai~~-----~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~-----~  343 (466)
                           ..|+++|++++++     .+++++++++|+||||.+++   +++|+++|++||++||+||+|....+..     +
T Consensus       186 ~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s  265 (407)
T PLN02368        186 ESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFIS  265 (407)
T ss_pred             cccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccc
Confidence                 2478999998863     14899999999999999996   5678888999999999999986543211     1


Q ss_pred             -c----c-------cCCcEEEECCcccc-CccccceeEEEE---eCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH---
Q 012296          344 -L----S-------LGADLVLHSATKFI-GGHNDVLAGSIS---GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---  404 (466)
Q Consensus       344 -l----~-------~gaDivv~S~sK~l-gg~gdv~gG~iv---g~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~---  404 (466)
                       .    .       .+..|+++|+||.| +.+|+ +.||++   +++++++++.+.... ..+.+....+++...++   
T Consensus       266 ~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~Gl-RiGy~i~~~~~~~li~~~~~~~~~-~~~~~~~~Q~aa~~~l~~~~  343 (407)
T PLN02368        266 AKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQ-RGGYFEMTNIPPKTVEEIYKVASI-ALSPNVSGQIFMGLMVNPPK  343 (407)
T ss_pred             HHHHHhhhcccccccceEEEEecCCcccccCCcc-ceEEEEEeCCCHHHHHHHHHHhcc-cCCCCcHHHHHHHHHhCCCC
Confidence             0    1       12348899999998 67775 478887   488899888876432 22233333333333221   


Q ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 012296          405 -----------TLHLRVQQQNSTALRMAKILEAHPKVKR  432 (466)
Q Consensus       405 -----------tl~~R~~~~~~na~~La~~L~~~p~V~~  432 (466)
                                 .+...++...++++.+.+.|+++|++..
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~  382 (407)
T PLN02368        344 PGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVC  382 (407)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEe
Confidence                       1223456678888999999999988753

>PRK03321 putative aminotransferase; Provisional

Probab=99.84  E-value=4.9e-20  Score=188.40  Aligned_cols=215  Identities=18%  Similarity=0.250  Sum_probs=159.2

Q ss_pred             cCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          205 GRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~e-~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      .+|+.+....+++.+|++++.+ +.+++++|+ +++..++..++++||+|+++.+.|.....    .++..|.++..++.
T Consensus        52 ~~y~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~~----~~~~~g~~~~~v~~  127 (352)
T PRK03321         52 NRYPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPI----LVQVAGATPVQVPL  127 (352)
T ss_pred             CcCCCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHHH----HHHHcCCEEEEccC
Confidence            3445667889999999999874 467778887 67787888889999999999999875432    23456777776654


Q ss_pred             C-----CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHh--cCCEEEEeCCCCCCCcc----ccc----ccC
Q 012296          283 A-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ----KAL----SLG  347 (466)
Q Consensus       283 ~-----Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~--~gillIvDea~a~~~~~----~~l----~~g  347 (466)
                      .     |+++++++++++ +++|++++|+||||.+.+.++|.++|++  +|+++|+|++|......    .+.    ...
T Consensus       128 ~~~~~~~~~~l~~~~~~~-~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~  206 (352)
T PRK03321        128 TPDHTHDLDAMAAAITDR-TRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHP  206 (352)
T ss_pred             CCCCCCCHHHHHHhhccC-CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCC
Confidence            3     689999999774 8999999999999999999999999987  59999999997643221    111    112


Q ss_pred             CcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHH
Q 012296          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI---IRGMKTLHLRVQQQNSTALRMAKIL  424 (466)
Q Consensus       348 aDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~---l~~L~tl~~R~~~~~~na~~La~~L  424 (466)
                      ..+++.|+||.|+.+| ++.|++++++++++.+++....  ...+.....++   +...+.+..++++..+++..+.+.|
T Consensus       207 ~vi~~~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~~~~--~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L  283 (352)
T PRK03321        207 NVVVLRTFSKAYGLAG-LRVGYAVGHPEVIAALRKVAVP--FSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAAL  283 (352)
T ss_pred             CEEEEecchHHhhhHH-HhhhhhcCCHHHHHHHHHhcCC--CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3588899999999776 4689999999999988775432  23344433322   3333455556666667777888888


Q ss_pred             HcC
Q 012296          425 EAH  427 (466)
Q Consensus       425 ~~~  427 (466)
                      ++.
T Consensus       284 ~~~  286 (352)
T PRK03321        284 RAA  286 (352)
T ss_pred             HHC
Confidence            875

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.84  E-value=1.5e-19  Score=186.82  Aligned_cols=220  Identities=14%  Similarity=0.201  Sum_probs=155.2

Q ss_pred             cCCCchhHHHHHHHHHhhhC--------C-CcEEEeCCHH-HHHHHHHHHHccCCC-EEEEcCCCCcchHHHHHhhcccC
Q 012296          205 GRYGNPTTVVVEEKMSALEG--------A-ESTVIMASGM-SASTVMLLALVPAGG-HIVTTTDCYRKTRIFIETVLPKM  273 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g--------~-e~~l~~sSGs-~Ai~~al~all~~Gd-~Vlv~~~~y~~t~~~~~~~l~~~  273 (466)
                      .+|+.+....|++.|+++++        . .+.|++++|+ +++..++.+++.+|| +|++++|+|.....    .++..
T Consensus        61 ~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~----~~~~~  136 (374)
T PRK02610         61 NRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGI----LAQTL  136 (374)
T ss_pred             cCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHH----HHHHc
Confidence            34455566789999999886        2 2457777777 888888888887886 89999999987553    34556


Q ss_pred             CceEEEeC------CCCHHHHHHhhcC---CCceEEEEeCCCCCCcccccHHHHHHHHHh-cCCEEEEeCCCCCCCcccc
Q 012296          274 GITATVID------PADMEGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKA  343 (466)
Q Consensus       274 Gi~v~~vd------~~Dle~Le~ai~~---~~tklV~lesP~NPtG~v~dl~~Ia~la~~-~gillIvDea~a~~~~~~~  343 (466)
                      |+++..++      ..|+++|++++++   .++++|++++|+||||.+++.+++.++++- +++++|+||+|........
T Consensus       137 g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~  216 (374)
T PRK02610        137 GIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTL  216 (374)
T ss_pred             CCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccch
Confidence            77776664      2368999988864   358999999999999999987776666532 4899999999875322111


Q ss_pred             ---c-ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHH---HHHhhHHHHHHHHHHHHH
Q 012296          344 ---L-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL---IIRGMKTLHLRVQQQNST  416 (466)
Q Consensus       344 ---l-~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l---~l~~L~tl~~R~~~~~~n  416 (466)
                         + ....-+++.|+||.+|.+| ++.||+++++++++.+...+..++  .+.....+   ++...+.+..++++..+.
T Consensus       217 ~~~~~~~~~~ivi~SfSK~~g~~G-lRiG~~v~~~~l~~~l~~~~~~~~--~~~~~q~a~~~~l~~~~~~~~~~~~~~~~  293 (374)
T PRK02610        217 VGELAQHPNWVILRTFSKAFRLAA-HRVGYAIGHPELIAVLEKVRLPYN--LPSFSQLAAQLALEHRQELLAAIPEILQE  293 (374)
T ss_pred             HHHHhcCCCEEEEEecchhccCcc-cceeeeecCHHHHHHHHHhcCCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence               1 1123488999999999888 468999999999998887664333  23333333   333333444455555666


Q ss_pred             HHHHHHHHHcCCCeE
Q 012296          417 ALRMAKILEAHPKVK  431 (466)
Q Consensus       417 a~~La~~L~~~p~V~  431 (466)
                      +..+.+.|++++++.
T Consensus       294 r~~l~~~L~~~~~~~  308 (374)
T PRK02610        294 RDRLYQALQELPQLR  308 (374)
T ss_pred             HHHHHHHHHhCCCcE
Confidence            777888888876653

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.84  E-value=6.7e-20  Score=183.61  Aligned_cols=213  Identities=16%  Similarity=0.175  Sum_probs=150.3

Q ss_pred             CCCchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC---
Q 012296          206 RYGNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---  281 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g~e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd---  281 (466)
                      .++.....++|+.+|+++|+++++++++|+ .++..++.+++++||+|++++++|.+....+    ...|+++.+++   
T Consensus        55 ~~~~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~----~~~g~~~~~v~~~~  130 (294)
T cd00615          55 LDPTGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGL----VLSGAVPVYLKPER  130 (294)
T ss_pred             CCCChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHH----HHCCCEEEEecCcc
Confidence            345667899999999999998888766665 8999999999999999999999999876544    33577666653   


Q ss_pred             --------CCCHHHHHHhhcC-CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC------ccccccc
Q 012296          282 --------PADMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL------NQKALSL  346 (466)
Q Consensus       282 --------~~Dle~Le~ai~~-~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~------~~~~l~~  346 (466)
                              ..|++++++++++ .++++|++++| |++|.+.|+++|+++|+++|+++++|++++..+      .......
T Consensus       131 ~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~  209 (294)
T cd00615         131 NPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMA  209 (294)
T ss_pred             CcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhc
Confidence                    2478999999864 24899999998 689999999999999999999999999987532      1223456


Q ss_pred             CCcEEEECCccccCccccceeEEEEeCHHH--HHHHHHHHHHhCCC-chHHHHHHHHHhhH----HHHHHHHHHHHHHHH
Q 012296          347 GADLVLHSATKFIGGHNDVLAGSISGSGKL--VTQIRNLHHVLGGA-LNPNAAYLIIRGMK----TLHLRVQQQNSTALR  419 (466)
Q Consensus       347 gaDivv~S~sK~lgg~gdv~gG~ivg~~el--i~~l~~~~~~~G~~-lsp~~a~l~l~~L~----tl~~R~~~~~~na~~  419 (466)
                      |+|+++.|+||++++..  .+|++..+.+.  .+++......+..+ .+......+...++    .-..++++..++++.
T Consensus       210 ~~div~~S~hK~l~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~~~~~  287 (294)
T cd00615         210 GADIVVQSTHKTLPALT--QGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMALEGKELVEELIELALY  287 (294)
T ss_pred             CCcEEEEchhcccchHh--HHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            89999999999998764  45666555432  23444433333322 22111111111111    123455666777777


Q ss_pred             HHHHHH
Q 012296          420 MAKILE  425 (466)
Q Consensus       420 La~~L~  425 (466)
                      +.++|+
T Consensus       288 ~r~~l~  293 (294)
T cd00615         288 ARQEIN  293 (294)
T ss_pred             HHHHHh
Confidence            777664

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.84  E-value=5.2e-20  Score=188.51  Aligned_cols=213  Identities=14%  Similarity=0.216  Sum_probs=154.2

Q ss_pred             cCCCchhHHHHHHHHHhhhCCC-cEEEe-CCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          205 GRYGNPTTVVVEEKMSALEGAE-STVIM-ASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~e-~~l~~-sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      .+|+.+...+|++.++++++.+ +.+++ ++|+ +++..++..++++||+|++++|.|.....    .++..|+++..++
T Consensus        64 ~~y~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~~~~gd~vlv~~p~y~~~~~----~~~~~g~~~~~~~  139 (361)
T PRK00950         64 HRYPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEI----SAKAHGAKPVYAK  139 (361)
T ss_pred             cCCCCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHH----HHHHcCCEEEEee
Confidence            3455666789999999999873 34444 7887 77888888888999999999998876432    3455688777764


Q ss_pred             -----CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc--ccc--ccCCcEEE
Q 012296          282 -----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--KAL--SLGADLVL  352 (466)
Q Consensus       282 -----~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~--~~l--~~gaDivv  352 (466)
                           ..|+++++++++++ +++|++++|+||||.+.++++|.++|+++|+++|+|++|......  ..+  .....+++
T Consensus       140 ~~~~~~~~~~~l~~~~~~~-~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~  218 (361)
T PRK00950        140 REEDFSLDVDSVLNAITEK-TKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIG  218 (361)
T ss_pred             cCCCCCcCHHHHHHHhccC-CCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEE
Confidence                 34688999988764 899999999999999999999999999999999999998643211  111  12334788


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHH
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILE  425 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~L~  425 (466)
                      .|+||.+|.+| ++.|++++++++++.++.....++  .++.....+...+   +.++...++..++++.+.+.|.
T Consensus       219 ~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~  291 (361)
T PRK00950        219 RTFSKVFGLAG-LRIGYGFVPEWLIDYYMRAKTPFS--LTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP  291 (361)
T ss_pred             EeehHhhcCch-hhcchhcCCHHHHHHHHHhcCCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999877 457999999999988877655443  3333333333333   2333334444555556666554

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.84  E-value=1.4e-19  Score=184.71  Aligned_cols=212  Identities=17%  Similarity=0.212  Sum_probs=154.8

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      +.+|+.+....|++.++++++. .+.+++++|+ +++..++..+  +||+|+++.|.|....    ...+..|+++..++
T Consensus        49 ~~~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~--~gd~V~v~~P~y~~~~----~~~~~~g~~~~~v~  122 (337)
T PRK03967         49 FNRYPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKLF--EGKHIVITPPTFGMYS----FYAKLNGIPVIDVP  122 (337)
T ss_pred             cccCCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh--CCCeEEEeCCChHHHH----HHHHHcCCeEEEee
Confidence            5666666778999999999986 3567777776 8887776655  7999999999997533    23345677776664


Q ss_pred             C-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccc---c-ccCCcEEE
Q 012296          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA---L-SLGADLVL  352 (466)
Q Consensus       282 ~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~---l-~~gaDivv  352 (466)
                      .     .|++.+++.+.  +++++++++|+||||.+.+.++|.++++ +++++|+|++|........   . .....+++
T Consensus       123 ~~~~~~~d~~~l~~~~~--~~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l  199 (337)
T PRK03967        123 LKEDFTIDGERIAEKAK--NASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILL  199 (337)
T ss_pred             cCCCCCcCHHHHHHhcc--CCCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEEEE
Confidence            3     36788887653  3789999999999999999999999995 7999999999875321111   1 11235889


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII---RGMKTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l---~~L~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      .|+||.|+.+| ++.||++++++++++++.....++  .+.....++.   ...+.+..+++...+++..+.+.|.++
T Consensus       200 ~S~SK~~~l~G-lRiG~iv~~~~~i~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~  274 (337)
T PRK03967        200 RTFSKAFGLAG-IRAGYAIANEEIIDALYRIKPPFS--LNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGEY  274 (337)
T ss_pred             ecchHhhcchh-hhheeeecCHHHHHHHHhhcCCCC--CCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999777 468999999999998887664433  2333333333   333445556666777788888888764

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.84  E-value=4.3e-19  Score=185.81  Aligned_cols=218  Identities=15%  Similarity=0.186  Sum_probs=152.7

Q ss_pred             CCCch-hHHHHHHHHHhhhC------------C-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhc
Q 012296          206 RYGNP-TTVVVEEKMSALEG------------A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL  270 (466)
Q Consensus       206 R~~np-~~~~Lee~LA~l~g------------~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l  270 (466)
                      +|+++ ....|++.++++++            . ++.+++++|+ +++.+++.+++++||+|+++.|+|.....    .+
T Consensus        70 ~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~----~~  145 (412)
T PTZ00433         70 GYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYET----VC  145 (412)
T ss_pred             CCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHH----HH
Confidence            34444 36678888888764            1 3455566665 99999999999999999999999988653    34


Q ss_pred             ccCCceEEEeCC-------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc
Q 012296          271 PKMGITATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN  340 (466)
Q Consensus       271 ~~~Gi~v~~vd~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~  340 (466)
                      ...|+++..++.       .|+++|+++++++ +++|++++|+||||.+++   +++|+++|+++|++||+|++|.....
T Consensus       146 ~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~-~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~  224 (412)
T PTZ00433        146 KAYGIEMRFYNCRPEKDWEADLDEIRRLVDDR-TKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVF  224 (412)
T ss_pred             HHcCCEEEEEecCccccCcCCHHHHHHHhccC-ceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEecccccccc
Confidence            456777766642       3689999988774 899999999999999886   67789999999999999999875432


Q ss_pred             cc----c-ccc---CCcEEEECCccccCccccceeEEEEe------CHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---
Q 012296          341 QK----A-LSL---GADLVLHSATKFIGGHNDVLAGSISG------SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---  403 (466)
Q Consensus       341 ~~----~-l~~---gaDivv~S~sK~lgg~gdv~gG~ivg------~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---  403 (466)
                      ..    . ..+   ...+++.|+||.++.+|. +.||+++      .+++++.++...... ...+.....++...+   
T Consensus       225 ~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGl-RlG~~i~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~q~a~~~~l~~~  302 (412)
T PTZ00433        225 NGATFTSVADFDTTVPRVILGGTAKNLVVPGW-RLGWLLLVDPHGNGGDFLDGMKRLGMLV-CGPCSVVQAALGEALLNT  302 (412)
T ss_pred             CCCCccchhhccCCCceEEEccchhhcCCCCe-eEEEEEEeCCcccHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHhcC
Confidence            11    1 111   124788999999988874 5788875      245777776654322 223443333322222   


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHcCCCe
Q 012296          404 --KTLHLRVQQQNSTALRMAKILEAHPKV  430 (466)
Q Consensus       404 --~tl~~R~~~~~~na~~La~~L~~~p~V  430 (466)
                        +.+....++..++++.+.+.|+++.++
T Consensus       303 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  331 (412)
T PTZ00433        303 PQEHLEQIVAKLEEGAMVLYNHIGECIGL  331 (412)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence              234445566778888899999876443

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.84  E-value=2.9e-19  Score=192.60  Aligned_cols=213  Identities=13%  Similarity=0.152  Sum_probs=145.5

Q ss_pred             HHHHHHHHHhhh------CC-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          212 TVVVEEKMSALE------GA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       212 ~~~Lee~LA~l~------g~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      ...|++.|++++      +. .+.|++++|+ +++.+++.+++++||+|++++|.|......    +...|.++..++. 
T Consensus       187 ~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~----~~~~g~~~v~~~~~  262 (517)
T PRK13355        187 LFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTAC----VNLAGGTAVHYRCD  262 (517)
T ss_pred             hHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHH----HHHCCCEEEEeecC
Confidence            678888888877      33 3456677766 899999999999999999999999875533    3445666655532 


Q ss_pred             ------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----cccccCC
Q 012296          283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALSLGA  348 (466)
Q Consensus       283 ------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----~~l~~ga  348 (466)
                            .|+++|+++++++ +++|++++|+||||.+++   +++|+++|++||++||+||+|......     ....+..
T Consensus       263 ~~~~~~~d~~~l~~~~~~~-~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~  341 (517)
T PRK13355        263 EQSEWYPDIDDIRSKITSR-TKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAP  341 (517)
T ss_pred             cccCCCCCHHHHHHhcCcC-ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCC
Confidence                  3789999999875 999999999999999998   788999999999999999998643221     1112212


Q ss_pred             c---EEEECCccccCccccceeEEEE--eCHHHH----HHHHHHHHHhCCCchHHHHHHHHHhhH------HHHHHHHHH
Q 012296          349 D---LVLHSATKFIGGHNDVLAGSIS--GSGKLV----TQIRNLHHVLGGALNPNAAYLIIRGMK------TLHLRVQQQ  413 (466)
Q Consensus       349 D---ivv~S~sK~lgg~gdv~gG~iv--g~~eli----~~l~~~~~~~G~~lsp~~a~l~l~~L~------tl~~R~~~~  413 (466)
                      +   +++.|+||.++.+|++ .||++  ++++++    +.+..... ...+.+....+++...|+      ..-...++.
T Consensus       342 ~~~vi~~~S~SK~~~~~G~R-iG~~i~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~  419 (517)
T PRK13355        342 DLFCVTFSGLSKSHMIAGYR-IGWMILSGNKRIAKDYIEGLNMLAN-MRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRV  419 (517)
T ss_pred             CCeEEEEecchhhccCcccc-eEEEEeeCchhhHHHHHHHHHHHhc-CcCCcChHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            2   4469999999988854 78877  445443    33332222 112233333333332221      121223445


Q ss_pred             HHHHHHHHHHHHcCCCeE
Q 012296          414 NSTALRMAKILEAHPKVK  431 (466)
Q Consensus       414 ~~na~~La~~L~~~p~V~  431 (466)
                      .++++.+.+.|++.|++.
T Consensus       420 ~~~r~~l~~~L~~~~g~~  437 (517)
T PRK13355        420 YEQRELVYNALNAIPGIS  437 (517)
T ss_pred             HHHHHHHHHHHhcCCCcc
Confidence            566788999998876653

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.84  E-value=1.3e-19  Score=185.01  Aligned_cols=213  Identities=16%  Similarity=0.158  Sum_probs=155.2

Q ss_pred             cCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      .+|+++...+|++.+|++++. .+.+++++|+ +++.+++.+++++||+|++++|.|+.....    .+..|+++..++.
T Consensus        55 ~~y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~----~~~~g~~~~~v~~  130 (353)
T PRK05387         55 RLYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFFNHDRPLLFPDITYSFYPVY----AGLYGIPYEEIPL  130 (353)
T ss_pred             hcCCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEeCCCHHHHHHH----HHHcCCEEEEeec
Confidence            345556668999999999987 3445666666 999999999999999999999999664422    3455777666643


Q ss_pred             -----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhc-CCEEEEeCCCCCCCcccc---c-ccCCcEEE
Q 012296          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK-GAIVCIDGTFATPLNQKA---L-SLGADLVL  352 (466)
Q Consensus       283 -----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~-gillIvDea~a~~~~~~~---l-~~gaDivv  352 (466)
                           .|++++++     ++++|++++|+||||.+.+.+++.++++.+ ++++|+||+|........   . ....++++
T Consensus       131 ~~~~~~d~~~l~~-----~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~  205 (353)
T PRK05387        131 DDDFSIDVEDYLR-----PNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVV  205 (353)
T ss_pred             CCCCCCCHHHHHh-----cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEE
Confidence                 35666652     257899999999999999999999999875 999999999864221111   1 12456999


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHHHHHHHHHhC-CCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG-GALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G-~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      .|+||.++.+|. +.|+++++++++++++......+ .+.+....+++...+   +.++...++..++++.+.+.|+++
T Consensus       206 ~S~SK~~~~~Gl-R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  283 (353)
T PRK05387        206 QTFSKSRSLAGL-RVGFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEAL  283 (353)
T ss_pred             EehhHhhcchhh-hceeeecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            999999997774 58999999999998887764432 233444433333333   345555666778888899999876

>PRK10534 L-threonine aldolase; Provisional

Probab=99.84  E-value=3.5e-19  Score=180.53  Aligned_cols=216  Identities=16%  Similarity=0.213  Sum_probs=154.4

Q ss_pred             cCC-CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccC-CceEEEeC-
Q 012296          205 GRY-GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM-GITATVID-  281 (466)
Q Consensus       205 ~R~-~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~-Gi~v~~vd-  281 (466)
                      .+| ++|...+|++.|++++|.+..+++++|++++...+.+++.+||+|+++.+.|...+...  ..... ++++..++ 
T Consensus        28 ~~Y~~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  105 (333)
T PRK10534         28 DVYGDDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLYEAG--GAAVLGSIQPQPIDA  105 (333)
T ss_pred             cccCCCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhcCCCCeeEEechhhhhHhcCC--chHHhcCceEEeecC
Confidence            455 68999999999999999988899999999988888888999999999887775322110  01112 24444442 


Q ss_pred             ----CCCHHHHHHhhcCC-----CceEEEEeCCCCCCcccccHH---HHHHHHHhcCCEEEEeCCCCCCC------cccc
Q 012296          282 ----PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPL------NQKA  343 (466)
Q Consensus       282 ----~~Dle~Le~ai~~~-----~tklV~lesP~NPtG~v~dl~---~Ia~la~~~gillIvDea~a~~~------~~~~  343 (466)
                          ..|+++|+++++++     ++++|++++|+  +|.+.+.+   +|.++|+++|++|++||+|....      ....
T Consensus       106 ~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~  183 (333)
T PRK10534        106 AADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKE  183 (333)
T ss_pred             CCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHH
Confidence                23799999998652     38999999876  49998765   55678899999999999854210      0011


Q ss_pred             cccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCch--HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 012296          344 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN--PNAAYLIIRGMKTLHLRVQQQNSTALRMA  421 (466)
Q Consensus       344 l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~ls--p~~a~l~l~~L~tl~~R~~~~~~na~~La  421 (466)
                      .....|.++.|+||.++..   +||++++++++++.++.++..++..++  ...+.+++..++....++++..++++++.
T Consensus       184 ~~~~~~~~~~s~SK~~~~~---~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~r~~l~  260 (333)
T PRK10534        184 ITQYCDSFTICLSKGLGTP---VGSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHNVARLQEDHDNAAWLA  260 (333)
T ss_pred             HHhcCCEEEEEeEcCCCCc---ccceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            1123476677999998865   466888999999999888776664433  23344444455554566777777888999


Q ss_pred             HHHHcC
Q 012296          422 KILEAH  427 (466)
Q Consensus       422 ~~L~~~  427 (466)
                      +.|+++
T Consensus       261 ~~L~~~  266 (333)
T PRK10534        261 EQLREA  266 (333)
T ss_pred             HHHHhC
Confidence            999976

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.84  E-value=2.7e-19  Score=182.85  Aligned_cols=219  Identities=18%  Similarity=0.233  Sum_probs=159.3

Q ss_pred             cCCCchh-HHHHHHHHHhhhC--------CCcEEEeCCHH-HHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccC
Q 012296          205 GRYGNPT-TVVVEEKMSALEG--------AESTVIMASGM-SASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKM  273 (466)
Q Consensus       205 ~R~~np~-~~~Lee~LA~l~g--------~e~~l~~sSGs-~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~  273 (466)
                      ..|+.+. ...|++.++++++        .+..+++++|+ +++..++..+ ..+||.|++++|+|+.....+    +..
T Consensus        38 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~----~~~  113 (363)
T PF00155_consen   38 LGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAA----RLL  113 (363)
T ss_dssp             TSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHH----HHT
T ss_pred             ccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhcccccccccceecCCccccccccc----ccc
Confidence            3444444 7899999999988        24378888998 5666666666 569999999999999876444    445


Q ss_pred             CceEEEeC-------CCCHHHHHHhhcCC-----CceEEEEeCCCCCCcccccHH---HHHHHHHhcCCEEEEeCCCCCC
Q 012296          274 GITATVID-------PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATP  338 (466)
Q Consensus       274 Gi~v~~vd-------~~Dle~Le~ai~~~-----~tklV~lesP~NPtG~v~dl~---~Ia~la~~~gillIvDea~a~~  338 (466)
                      |+++..++       ..|+++|++.+++.     ++++|++++|+||||.+++.+   +|+++|+++|+++|+|++|...
T Consensus       114 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~  193 (363)
T PF00155_consen  114 GAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDL  193 (363)
T ss_dssp             TSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTG
T ss_pred             Cceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceecc
Confidence            77766665       34899999998872     378999999999999998755   5555599999999999998765


Q ss_pred             Ccccc--------cccCC-cEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHH---HH--h--
Q 012296          339 LNQKA--------LSLGA-DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI---IR--G--  402 (466)
Q Consensus       339 ~~~~~--------l~~ga-Divv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~---l~--~--  402 (466)
                      .....        ...+. .+++.|+||.+|.+|. +.|++++++++++.++........  +...+.++   +.  .  
T Consensus       194 ~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~Gl-RvG~i~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~  270 (363)
T PF00155_consen  194 IFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGL-RVGYIVAPPELIERLRRFQRSGLS--SSPMQAAAAAALSDPELV  270 (363)
T ss_dssp             BSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGG-TEEEEEEEHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCcccccccccccceeeeecccccccccc-ccccccchhhhhhhhhhccccccc--cchhhHHHHHhhhccccc
Confidence            44311        12233 4899999999998874 578888899999999887776554  22222221   11  1  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 012296          403 MKTLHLRVQQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       403 L~tl~~R~~~~~~na~~La~~L~~~p~V~  431 (466)
                      .+.+..+++++.++++.+.+.|++. ++.
T Consensus       271 ~~~~~~~~~~l~~~~~~l~~~L~~~-~~~  298 (363)
T PF00155_consen  271 EKWLEELRERLRENRDLLREALEEI-GIT  298 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT-TSE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHh-hhh
Confidence            1266677788889999999999887 443

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.84  E-value=2.3e-18  Score=179.11  Aligned_cols=211  Identities=14%  Similarity=0.161  Sum_probs=150.1

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeC-CHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          212 TVVVEEKMSALE----GA----ESTVIMA-SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~----e~~l~~s-SGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ...|++.+++++    +.    ++.++++ ++++|+.+++.+++.+||+|++++|+|.+....    ++..|+++..++.
T Consensus        69 ~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~----~~~~g~~~~~~~~  144 (391)
T PRK07309         69 LLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPI----VNLVGAEIVEIDT  144 (391)
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHH----HHHcCCEEEEEec
Confidence            567777777765    32    2344454 555999999999999999999999999986533    3446777766642


Q ss_pred             ------CCHHHHHHhhcC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----cccc-
Q 012296          283 ------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS-  345 (466)
Q Consensus       283 ------~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----~~l~-  345 (466)
                            .|++++++++++  .++++|++++|+||||.+.+   +++|+++|++||+++|+|++|......     .... 
T Consensus       145 ~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~  224 (391)
T PRK07309        145 TENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY  224 (391)
T ss_pred             CCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh
Confidence                  368999988864  24899999999999999986   788899999999999999998753321     1111 


Q ss_pred             -cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH----HHHHHHHHHHHHHHH
Q 012296          346 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRM  420 (466)
Q Consensus       346 -~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~t----l~~R~~~~~~na~~L  420 (466)
                       ....+++.|+||.++.+| ++.||+++++++++++...........+......+...++.    .....++..++++.+
T Consensus       225 ~~~~~i~~~S~SK~~g~~G-lRvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  303 (391)
T PRK07309        225 LPDQTILINGLSKSHAMTG-WRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYI  303 (391)
T ss_pred             ccCCEEEEecChhhccCcc-ceeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHH
Confidence             123489999999999777 46899999999999888765433333334433333333332    222234556677788


Q ss_pred             HHHHHcC
Q 012296          421 AKILEAH  427 (466)
Q Consensus       421 a~~L~~~  427 (466)
                      .+.|+++
T Consensus       304 ~~~l~~~  310 (391)
T PRK07309        304 IEKMTDL  310 (391)
T ss_pred             HHHHHHC
Confidence            8888875

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.84  E-value=1.4e-19  Score=186.78  Aligned_cols=214  Identities=16%  Similarity=0.265  Sum_probs=154.7

Q ss_pred             CCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC---
Q 012296          207 YGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---  281 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd---  281 (466)
                      |+.+....|++.||++++. .+.|++++|+ +++..++..++++||.|++++|+|+.....+    ...|.++..++   
T Consensus        64 Y~~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~~----~~~g~~~~~vp~~~  139 (369)
T PRK08153         64 YGDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYHV----AGFGGRLVTVPYRD  139 (369)
T ss_pred             CCCCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCcchHHHHHH----HHcCCeEEEeeCCC
Confidence            4445577999999999987 4567777777 8888888888999999999999998755333    23466665554   


Q ss_pred             -CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHh--cCCEEEEeCCCCCCCcc---ccc--ccCCcEEEE
Q 012296          282 -PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ---KAL--SLGADLVLH  353 (466)
Q Consensus       282 -~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~--~gillIvDea~a~~~~~---~~l--~~gaDivv~  353 (466)
                       ..|++++++.+...++++|++++|+||||.+.+.+++.++++.  +|++||+||+|......   ..+  .....+++.
T Consensus       140 ~~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~  219 (369)
T PRK08153        140 DREDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMR  219 (369)
T ss_pred             CCCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEEe
Confidence             3467888776654458999999999999999998887777764  38999999998643221   111  112348899


Q ss_pred             CCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       354 S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      |+||.+|.+| ++.||+++++++++.+...+..++  .++...+++...+   +.+....+...++++.+.+.|+++
T Consensus       220 SfSK~~g~~G-lRiG~~v~~~~~~~~l~~~~~~~~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~  293 (369)
T PRK08153        220 TFSKAYGLAG-ARVGYAIGAPGTIKAFDKVRNHFG--MNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARAN  293 (369)
T ss_pred             cchHhccCcc-hheeeeecCHHHHHHHHHhhcCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999777 457999999999998887665443  3454444444333   334444555667778888888765

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.84  E-value=3e-19  Score=178.93  Aligned_cols=249  Identities=20%  Similarity=0.211  Sum_probs=188.8

Q ss_pred             ccccCCCccCChHHHHHHHhcc-cCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEc
Q 012296          177 VVNTSAYFFKKTAELIDFKEKR-RASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTT  255 (466)
Q Consensus       177 i~~sst~~~~~~~~~~~~~~~~-~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~  255 (466)
                      -+.|+++.-+..++++++...+ ...-.|+  .+|..+++|+++++++|.+.+++++|||+|+.++|.+.++||+.|++.
T Consensus         3 ~f~SDn~~g~~~~m~eam~~a~~~~~~~YG--~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~   80 (342)
T COG2008           3 DFRSDNVAGPTPEMREALAAANAVGDDVYG--EDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHCQPGESVICH   80 (342)
T ss_pred             ccccCccCCCCHHHHHHHHhccccCCCCCC--CCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhcCCCCeEEEe
Confidence            3678888888888888877665 4455677  589999999999999999999999999999999999999999999998


Q ss_pred             CCCCcchHHHHHhhcccC--CceEEEeCC----CCHHHHHHhhcCC-----CceEEEEeCCCCCCccccc---HHHHHHH
Q 012296          256 TDCYRKTRIFIETVLPKM--GITATVIDP----ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVD---VKLVSDL  321 (466)
Q Consensus       256 ~~~y~~t~~~~~~~l~~~--Gi~v~~vd~----~Dle~Le~ai~~~-----~tklV~lesP~NPtG~v~d---l~~Ia~l  321 (466)
                      ...|-.++..=  ....+  +.++..++.    .++++|++.|.+.     ++.++++++.+|..|.+++   |++|.++
T Consensus        81 ~~aHi~~~E~G--a~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~  158 (342)
T COG2008          81 ETAHIYTDECG--APEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAV  158 (342)
T ss_pred             ccccceecccC--cHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHH
Confidence            88876543210  11111  233333332    3799999987643     3567777777778899997   4567888


Q ss_pred             HHhcCCEEEEeCCC------CCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHH-
Q 012296          322 CHKKGAIVCIDGTF------ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN-  394 (466)
Q Consensus       322 a~~~gillIvDea~------a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~-  394 (466)
                      ||++|+.|++|++-      +.+........++|++..++||.++.++   +.+++++.+++++++.+++..|+.+... 
T Consensus       159 ~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~---gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r  235 (342)
T COG2008         159 CKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPV---GAIVFGNRDFAKRARRWRKRAGGLMRKAR  235 (342)
T ss_pred             HHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCccee---eeEEEcCHHHHHHHHHHHHHhcccHhhhh
Confidence            99999999999981      1122223345589999999999999874   6788899999999999999998876542 


Q ss_pred             -HHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHcCCCeEE
Q 012296          395 -AAYLIIRGMKTLHLRVQQQNST--ALRMAKILEAHPKVKR  432 (466)
Q Consensus       395 -~a~l~l~~L~tl~~R~~~~~~n--a~~La~~L~~~p~V~~  432 (466)
                       .+...+..|+.-..++...++|  |++|++.|++.|+++-
T Consensus       236 ~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~  276 (342)
T COG2008         236 FLAAQGLYALEDDVWRLAADHANAMAARLAEGLEAKPGVKL  276 (342)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhcCCcee
Confidence             2333344556555566667778  9999999998888753

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.84  E-value=4.2e-19  Score=182.87  Aligned_cols=243  Identities=23%  Similarity=0.271  Sum_probs=177.9

Q ss_pred             cCCCchhHHHHHHHHHhhhCCCc---EEEeCCHHHHHHHHHHHH---ccCCCEEEEcCCCCcchHHHHHhhcccCCceEE
Q 012296          205 GRYGNPTTVVVEEKMSALEGAES---TVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~e~---~l~~sSGs~Ai~~al~al---l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~  278 (466)
                      ++......+++++.+++++|++.   .+++++++.++..++.++   +++||+|++.+..|++....+....++.|++++
T Consensus        38 ~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~  117 (371)
T PF00266_consen   38 SREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVR  117 (371)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEE
T ss_pred             hhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence            33345677889999999999844   455667779999999998   789999999999999988777666778899888


Q ss_pred             EeCC-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEE
Q 012296          279 VIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVL  352 (466)
Q Consensus       279 ~vd~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv  352 (466)
                      +++.     .|+++++++|+++ +++|++....|.+|...|+++|.++||++|+++++|.+++.+. ..+..++++|+++
T Consensus       118 ~i~~~~~~~~~~~~~~~~l~~~-~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~  196 (371)
T PF00266_consen  118 VIPADPGGSLDLEDLEEALNPD-TRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLV  196 (371)
T ss_dssp             EEEEGTTSSCSHHHHHHHHHTT-ESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEE
T ss_pred             cccccccchhhhhhhhhhhccc-cceEEeecccccccEEeeeceehhhhhccCCceeEechhccccccccccccccceee
Confidence            7752     3789999999875 9999999999999999999999999999999999999987654 3555667999999


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHHHHHHHH---------------------HhCCCchHHHHHHHHHhhHHH-----
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLIIRGMKTL-----  406 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~---------------------~~G~~lsp~~a~l~l~~L~tl-----  406 (466)
                      .|.+| ++|+.  ..|+++.+++++++++....                     ..+++.+....+.+..+++.+     
T Consensus       197 ~s~~K-l~gp~--G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~  273 (371)
T PF00266_consen  197 FSSHK-LGGPP--GLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGI  273 (371)
T ss_dssp             EESTS-TTSSS--TEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHH
T ss_pred             ecccc-cCCCC--chhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhcccc
Confidence            99999 55554  25999999988888742111                     012233333222222233322     


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          407 HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       407 ~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      +...++..+.++.+.+.|++.+.+. +.-|.-.            .-.+++++|.+++
T Consensus       274 ~~i~~~~~~l~~~~~~~l~~~~~~~-~~~~~~~------------~~~~~i~~~~~~~  318 (371)
T PF00266_consen  274 ERIRERIRELAEYLREALEELPGIE-VLGPDDE------------PRRPSIVSFNLPG  318 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTEE-ESSSSCG------------GBGTTEEEEEETT
T ss_pred             ccchhhhhhHHHHHHhhhhcCCcee-Eeeeccc------------ccccceEEEeecC
Confidence            3334566788889999999999875 3323111            2357888887754

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.84  E-value=5.9e-19  Score=184.18  Aligned_cols=216  Identities=15%  Similarity=0.127  Sum_probs=152.1

Q ss_pred             chhHHHHHHHHHhhhCC--------CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          209 NPTTVVVEEKMSALEGA--------ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~--------e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      ......+++.++++++.        ++.+++++|++|+.+++.+++.+||+|++++|.|.....    .+...|+++..+
T Consensus        72 ~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~  147 (403)
T TIGR01265        72 SVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDT----RAAFSGLEVRLY  147 (403)
T ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHH----HHHHcCCEEEEe
Confidence            34566788888888763        345555566799999999999999999999999986543    344567777665


Q ss_pred             CC-------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----c-cc
Q 012296          281 DP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A-LS  345 (466)
Q Consensus       281 d~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----~-l~  345 (466)
                      +.       .|+++++++++++ ++++++++|+||||.+++   +++|.++|+++|+++|+|++|.......    + ..
T Consensus       148 ~~~~~~~~~~d~~~l~~~~~~~-~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~  226 (403)
T TIGR01265       148 DLLPEKDWEIDLDGLEALADEK-TVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMAS  226 (403)
T ss_pred             cCCcccCCccCHHHHHHHhCcC-ccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhh
Confidence            42       3689999988775 899999999999999986   7889999999999999999987543211    1 11


Q ss_pred             c---CCcEEEECCccccCccccceeEEEEeC-H-H-----HHHHHHHHHHHhCCCchHHHHHHHHHhh-----HHHHHHH
Q 012296          346 L---GADLVLHSATKFIGGHNDVLAGSISGS-G-K-----LVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRV  410 (466)
Q Consensus       346 ~---gaDivv~S~sK~lgg~gdv~gG~ivg~-~-e-----li~~l~~~~~~~G~~lsp~~a~l~l~~L-----~tl~~R~  410 (466)
                      +   ..-+++.|+||.|+.+|. +.||+++. + +     +++.+...... ....+.+...++...+     +.+...+
T Consensus       227 ~~~~~~vi~~~S~SK~~~~pGl-RiG~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~  304 (403)
T TIGR01265       227 FASIVPVLSLGGISKRWVVPGW-RLGWIIIHDPHGIFRDTVLQGLKNLLQR-ILGPATIVQGALPDILENTPQEFFDGKI  304 (403)
T ss_pred             hccCCcEEEEeecccccCCCcc-eEEEEEEeCchhhhHHHHHHHHHHHhhh-hcCCChHHHHHHHHHHHhChHHHHHHHH
Confidence            1   124788999999988874 57887763 2 3     33334333321 1222333333333233     3455566


Q ss_pred             HHHHHHHHHHHHHHHcCCCeE
Q 012296          411 QQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       411 ~~~~~na~~La~~L~~~p~V~  431 (466)
                      ++..+++..+.+.|+.++++.
T Consensus       305 ~~~~~~~~~l~~~L~~~~~~~  325 (403)
T TIGR01265       305 SVLKSNAELCYEELKDIPGLV  325 (403)
T ss_pred             HHHHHHHHHHHHHHhcCCCce
Confidence            777888899999999887664

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.84  E-value=4.2e-19  Score=184.99  Aligned_cols=216  Identities=15%  Similarity=0.132  Sum_probs=150.0

Q ss_pred             chhHHHHHHHHHhhhC-----C--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          209 NPTTVVVEEKMSALEG-----A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       209 np~~~~Lee~LA~l~g-----~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      .+...+|++.++++++     .  +++++++++++++.+++.+++++||+|++++|+|....    ..++..|+++..++
T Consensus        72 ~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~----~~~~~~g~~v~~~~  147 (401)
T TIGR01264        72 TVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYE----TLAESMGIEVKLYN  147 (401)
T ss_pred             CCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHH----HHHHHcCCEEEEee
Confidence            4455678888888876     2  34444444559999999999999999999999998654    33455677776653


Q ss_pred             C-------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----ccc-cc
Q 012296          282 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL-SL  346 (466)
Q Consensus       282 ~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~~l-~~  346 (466)
                      .       .|+++++++++++ +++|++++|+||||.+++   +++|+++|+++|+++|+|++|......    .++ .+
T Consensus       148 ~~~~~~~~~d~~~l~~~~~~~-~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~  226 (401)
T TIGR01264       148 LLPDKSWEIDLKQLESLIDEK-TAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASL  226 (401)
T ss_pred             cCCccCCCCCHHHHHHHhccC-ceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHc
Confidence            2       3789999988774 899999999999999985   778899999999999999998753221    111 11


Q ss_pred             ---CCcEEEECCccccCccccceeEEEEeCH------HHHHHHHHHHHHhCCCchHHHHHHHHHhh-----HHHHHHHHH
Q 012296          347 ---GADLVLHSATKFIGGHNDVLAGSISGSG------KLVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQQ  412 (466)
Q Consensus       347 ---gaDivv~S~sK~lgg~gdv~gG~ivg~~------eli~~l~~~~~~~G~~lsp~~a~l~l~~L-----~tl~~R~~~  412 (466)
                         ...+++.|+||.|+.+| .+.||+++++      ++++.++..... ....+.....++...+     +.+....++
T Consensus       227 ~~~~~vi~~~SfSK~~~~~G-lRiG~iv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~  304 (401)
T TIGR01264       227 SSTVPILSCGGLAKRWLVPG-WRLGWIIIHDRRGILRDIRDGLVKLSQR-ILGPCTIVQGALPSILLRTPQEYFDGTLSV  304 (401)
T ss_pred             CCCCcEEEEccCcccCCCcc-ceEEEEEecCcchhHHHHHHHHHHHhhc-cCCCCcHHHHHHHHHHHhCcHHHHHHHHHH
Confidence               12478999999998888 4578888763      344444443321 1122222222222222     345555667


Q ss_pred             HHHHHHHHHHHHHcCCCeE
Q 012296          413 QNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       413 ~~~na~~La~~L~~~p~V~  431 (466)
                      ..++++.+.+.|+++|++.
T Consensus       305 ~~~~r~~l~~~L~~~~~~~  323 (401)
T TIGR01264       305 LESNAMLCYGALAAVPGLR  323 (401)
T ss_pred             HHHHHHHHHHHHHhCCCCc
Confidence            7788888999999886543

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK09148 aminotransferase; Validated

Probab=99.84  E-value=3.2e-19  Score=186.42  Aligned_cols=210  Identities=14%  Similarity=0.124  Sum_probs=148.3

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          212 TVVVEEKMSALE----GA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~----e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ...|++.+++++    |.    ++.|++++|+ +++..++..++.+||+|++++|+|+.....+    ...|+++..++.
T Consensus        70 ~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----~~~g~~v~~v~~  145 (405)
T PRK09148         70 IPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGF----IMAGGVIRSVPA  145 (405)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHH----HhcCCEEEEEeC
Confidence            456777777765    43    2256677766 9999999999999999999999999865333    346877766643


Q ss_pred             C----CHHHHHHhhc---CCCceEEEEeCCCCCCcccccH---HHHHHHHHhcCCEEEEeCCCCCCCcc-----cccc--
Q 012296          283 A----DMEGLEAALN---NNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS--  345 (466)
Q Consensus       283 ~----Dle~Le~ai~---~~~tklV~lesP~NPtG~v~dl---~~Ia~la~~~gillIvDea~a~~~~~-----~~l~--  345 (466)
                      .    ++++++++++   + ++++|++++|+||||.+++.   ++|.++|+++|+++|+||+|......     ....  
T Consensus       146 ~~~~~~~~~l~~~~~~~~~-~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~  224 (405)
T PRK09148        146 EPDEEFFPALERAVRHSIP-KPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVP  224 (405)
T ss_pred             CCCCCCccCHHHHHhhccc-cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCC
Confidence            2    3445555543   3 48999999999999999985   67888999999999999998643211     1111  


Q ss_pred             --cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHH
Q 012296          346 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALR  419 (466)
Q Consensus       346 --~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~na~~  419 (466)
                        .+..+++.|+||.++.+| .+.||+++++++++.+...+.....+.+.....++...+    +.++...++..++++.
T Consensus       225 ~~~~~~i~~~SfSK~~~~pG-lR~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~  303 (405)
T PRK09148        225 GAKDVTVEFTSMSKTFSMAG-WRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDV  303 (405)
T ss_pred             CccCcEEEEeccccccCCcc-hheeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence              123467899999999887 468999999999999988766544333333322222222    2344445566788888


Q ss_pred             HHHHHHcC
Q 012296          420 MAKILEAH  427 (466)
Q Consensus       420 La~~L~~~  427 (466)
                      +.+.|+++
T Consensus       304 l~~~L~~~  311 (405)
T PRK09148        304 LVESFGRA  311 (405)
T ss_pred             HHHHHHHc
Confidence            88888875

>PLN02651 cysteine desulfurase

Probab=99.84  E-value=1.1e-19  Score=187.02  Aligned_cols=222  Identities=17%  Similarity=0.193  Sum_probs=156.9

Q ss_pred             cCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHH----ccCCCEEEEcCCCCcchHHHHHhhcccCCceEE
Q 012296          205 GRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~al----l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~  278 (466)
                      ++......+++++.+++++|++  +.+++++|++++.+++..+    .++||+|++++..|++....+.. +...|++++
T Consensus        38 ~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~-~~~~g~~v~  116 (364)
T PLN02651         38 GWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRH-LQQEGFEVT  116 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHH-HHhcCCEEE
Confidence            3333456788999999999974  4455556668877776654    47899999999999886655533 346688887


Q ss_pred             EeCC-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC-CcccccccCCcEEE
Q 012296          279 VIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVL  352 (466)
Q Consensus       279 ~vd~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~-~~~~~l~~gaDivv  352 (466)
                      .++.     .|+++++++++++ +++|++++++|+||.+.|+++|.++||++|+++++|++++.+ ...+..++|+|+++
T Consensus       117 ~v~~~~~~~~d~~~l~~~i~~~-t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~  195 (364)
T PLN02651        117 YLPVKSDGLVDLDELAAAIRPD-TALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMS  195 (364)
T ss_pred             EEccCCCCcCCHHHHHHhcCCC-cEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEE
Confidence            7753     3789999999875 999999999999999999999999999999999999998765 34566678999999


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHHHHHHHH-------HhCCCchHHHHHHHHHhhHHH----HHHHHHHHHHHHHHH
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLGGALNPNAAYLIIRGMKTL----HLRVQQQNSTALRMA  421 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~-------~~G~~lsp~~a~l~l~~L~tl----~~R~~~~~~na~~La  421 (466)
                      .|.+||++++|   .|+++.+++...++.....       ...++.+....+.+..+++.+    +...++..+.++++.
T Consensus       196 ~s~hK~~gp~G---~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~  272 (364)
T PLN02651        196 ISGHKIYGPKG---VGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLL  272 (364)
T ss_pred             echhhhCCCCc---eEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            99999865544   5777777655443321110       112233332222223333332    223345566677777


Q ss_pred             HHHHc-CCCeE
Q 012296          422 KILEA-HPKVK  431 (466)
Q Consensus       422 ~~L~~-~p~V~  431 (466)
                      +.|++ .|+++
T Consensus       273 ~~l~~~~~~~~  283 (364)
T PLN02651        273 NGLRAKLGGVR  283 (364)
T ss_pred             HHHHhhCCCEE
Confidence            87775 56664

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.84  E-value=5.1e-19  Score=185.20  Aligned_cols=211  Identities=12%  Similarity=0.094  Sum_probs=145.3

Q ss_pred             hHHHHHHHHHhhh----C--C-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          211 TTVVVEEKMSALE----G--A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       211 ~~~~Lee~LA~l~----g--~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ....|++.+++++    |  . .+.+++++|+ +++.+++.+++.+||.|++++|+|+.....    +...|+++..++.
T Consensus        75 G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~----~~~~g~~~~~~~~  150 (409)
T PLN00143         75 GILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETY----AIFHHLEIRHFDL  150 (409)
T ss_pred             CCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHH----HHHcCCEEEEEec
Confidence            3456777777776    2  2 2455566665 999999999999999999999999886533    3345666665532


Q ss_pred             -------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----cccc---
Q 012296          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALS---  345 (466)
Q Consensus       283 -------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~~l~---  345 (466)
                             .|+++|+++++++ ++++++++|+||||.+++   +++|+++|+++|+++|+||+|......    .++.   
T Consensus       151 ~~~~~~~~d~~~l~~~~~~~-~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~  229 (409)
T PLN00143        151 LPEKGWEVDLDAVEAIADEN-TIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFA  229 (409)
T ss_pred             cCCCCCcCCHHHHHHhcccC-CEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhc
Confidence                   2789999988764 899999999999999997   677888899999999999998753321    1111   


Q ss_pred             -cCCcEEEECCccccCccccceeEEEEe-CH-HHH------HHHHHHHHHhCCCchHHHHHHHHHhh-----HHHHHHHH
Q 012296          346 -LGADLVLHSATKFIGGHNDVLAGSISG-SG-KLV------TQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQ  411 (466)
Q Consensus       346 -~gaDivv~S~sK~lgg~gdv~gG~ivg-~~-eli------~~l~~~~~~~G~~lsp~~a~l~l~~L-----~tl~~R~~  411 (466)
                       ....+++.|+||.|+.+|. +.||+++ ++ .++      +.+......... .+.....++...+     ..++..++
T Consensus       230 ~~~~vi~~~SfSK~f~~pGl-RvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~  307 (409)
T PLN00143        230 SIVPVITLGSISKRWMIPGW-GLGWLVTCDPSGLLQICEIADSIKKALNPAPF-PPTFIQAAIPEILEKTTEDFFSKTIN  307 (409)
T ss_pred             ccCcEEEEccchhhcCCCcc-ceEEEEeeCchhhhhhHHHHHHHHHHHhccCC-CCchHHHHHHHHHhcChHHHHHHHHH
Confidence             1234889999999999985 5788887 33 333      233333221111 1222222222222     35666677


Q ss_pred             HHHHHHHHHHHHHHcCC
Q 012296          412 QQNSTALRMAKILEAHP  428 (466)
Q Consensus       412 ~~~~na~~La~~L~~~p  428 (466)
                      +..++.+.+.+.|++++
T Consensus       308 ~~~~~~~~~~~~L~~~~  324 (409)
T PLN00143        308 ILRAALAFCYDKLKEIP  324 (409)
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            77788888888888764

>PRK08912 hypothetical protein; Provisional

Probab=99.84  E-value=8.6e-19  Score=181.70  Aligned_cols=210  Identities=18%  Similarity=0.221  Sum_probs=150.4

Q ss_pred             HHHHHHHHHhhh----CC---Cc-EEEeCCH-HHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          212 TVVVEEKMSALE----GA---ES-TVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~---e~-~l~~sSG-s~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ..+|++.+++++    |.   .+ .+++++| ++++.+++..++++||+|++++|.|+....    .++..|.++..++.
T Consensus        65 ~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~~~  140 (387)
T PRK08912         65 LPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLP----LIRRAGGVPRLVRL  140 (387)
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHH----HHHHcCCEEEEEec
Confidence            456777777654    32   22 4555555 599999999999999999999999987553    34556777665542


Q ss_pred             ------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----cc-c---c
Q 012296          283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA-L---S  345 (466)
Q Consensus       283 ------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~~-l---~  345 (466)
                            .|+++++++++++ +++|++++|+||||.+.+   +++|.++|+++|+++|+|++|......    .+ .   .
T Consensus       141 ~~~~~~~~~~~l~~~~~~~-~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  219 (387)
T PRK08912        141 EPPHWRLPRAALAAAFSPR-TKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPG  219 (387)
T ss_pred             CcccCcCCHHHHHHHhCcc-ceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCC
Confidence                  3689999988774 899999999999999987   667899999999999999997542211    11 1   1


Q ss_pred             -cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHh----hHHHHHHHHHHHHHHHHH
Q 012296          346 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG----MKTLHLRVQQQNSTALRM  420 (466)
Q Consensus       346 -~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~----L~tl~~R~~~~~~na~~L  420 (466)
                       .+.++++.|+||.++.+| .+.|++++++++++.+.......+...++....++...    .+.+....++..++++.+
T Consensus       220 ~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l  298 (387)
T PRK08912        220 MRERTVKIGSAGKIFSLTG-WKVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRL  298 (387)
T ss_pred             ccCceEEEeechhhccCcC-ceeEEEecCHHHHHHHHHHHhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence             245799999999999777 45899999999999887766544333333222222222    233444456667888888


Q ss_pred             HHHHHcC
Q 012296          421 AKILEAH  427 (466)
Q Consensus       421 a~~L~~~  427 (466)
                      .+.|+++
T Consensus       299 ~~~L~~~  305 (387)
T PRK08912        299 AAGLRRI  305 (387)
T ss_pred             HHHHHhC
Confidence            8999875

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.84  E-value=1.5e-18  Score=180.12  Aligned_cols=210  Identities=15%  Similarity=0.112  Sum_probs=164.6

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC----
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----  283 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~----  283 (466)
                      .+.++++|+.+++++|.+.+++++||++|+.+++.++ +++||+||+++++|.++...+    ...|.+++++|.+    
T Consensus        30 g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~----~~~G~~~v~vd~d~~~~  105 (376)
T TIGR02379        30 GPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAF----VLRGAKIVFVDIRPDTM  105 (376)
T ss_pred             cHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEEecCCCcC
Confidence            5789999999999999999999999999999998887 899999999999999876443    3568888887632    


Q ss_pred             --CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc--cccccCCcEEEECCc--c
Q 012296          284 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--KALSLGADLVLHSAT--K  357 (466)
Q Consensus       284 --Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~--~~l~~gaDivv~S~s--K  357 (466)
                        |+++++++++++ +++|+   |+|++|...|+++|.++|+++|++||+|++++.+...  .+...-.|+.++|++  |
T Consensus       106 ~~d~~~le~~i~~~-tk~Ii---p~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~~~K  181 (376)
T TIGR02379       106 NIDETLIESAITHR-TKAIV---PVHYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSIGHLGTFSFHETK  181 (376)
T ss_pred             CCCHHHHHHhcCcC-ceEEE---EeCCCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccCCCCCEEEEeCCCCC
Confidence              688999999874 89986   6788999999999999999999999999997754322  222222378888875  5


Q ss_pred             ccCccccceeEEEEe-CHHHHHHHHHHHHH-------------------hC--CCchHHHHHHHHHhhHHHHHHHHHHHH
Q 012296          358 FIGGHNDVLAGSISG-SGKLVTQIRNLHHV-------------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNS  415 (466)
Q Consensus       358 ~lgg~gdv~gG~ivg-~~eli~~l~~~~~~-------------------~G--~~lsp~~a~l~l~~L~tl~~R~~~~~~  415 (466)
                      .+..++  .||+++. ++++.++++.++..                   .|  ..++.+.|.+++..|+.++..+++..+
T Consensus       182 ~l~~g~--~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~~  259 (376)
T TIGR02379       182 NYTSGG--EGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADRINQDRLA  259 (376)
T ss_pred             cCcccC--CceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHHHHHHHHH
Confidence            555432  3676655 47888888876541                   12  124456677777889999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 012296          416 TALRMAKILEAHP  428 (466)
Q Consensus       416 na~~La~~L~~~p  428 (466)
                      +++...+.|.+++
T Consensus       260 ~~~~y~~~L~~~~  272 (376)
T TIGR02379       260 TWQLYQDALKPLE  272 (376)
T ss_pred             HHHHHHHHhccCC
Confidence            9999999988765

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK07683 aminotransferase A; Validated

Probab=99.83  E-value=1.7e-18  Score=179.78  Aligned_cols=212  Identities=14%  Similarity=0.176  Sum_probs=152.4

Q ss_pred             hhHHHHHHHHHhhh----CC---Cc-EEEeCCH-HHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          210 PTTVVVEEKMSALE----GA---ES-TVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       210 p~~~~Lee~LA~l~----g~---e~-~l~~sSG-s~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      +....|++.+++++    |.   .+ .+++++| ++|+.+++..++++||+|++++|+|......+    ...|+++.++
T Consensus        65 ~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~  140 (387)
T PRK07683         65 AGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPII----RLCGAKPVFI  140 (387)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHH----HHcCCEEEEe
Confidence            44567888888876    32   22 4555555 59999999999999999999999999865443    3467887777


Q ss_pred             CCC------CHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc---c-cc--
Q 012296          281 DPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---A-LS--  345 (466)
Q Consensus       281 d~~------Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~---~-l~--  345 (466)
                      +..      |.+++++.++++ +++|++++|+||||.+++   +++|+++|+++|+++|+|++|.......   + ..  
T Consensus       141 ~~~~~~~~~~~~~l~~~~~~~-~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~  219 (387)
T PRK07683        141 DTRSTGFRLTAEALENAITEK-TRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFP  219 (387)
T ss_pred             ecCcccCCCCHHHHHHhcCcC-ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhcc
Confidence            532      568899988774 899999999999999976   7888999999999999999987543211   1 11  


Q ss_pred             --cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHH
Q 012296          346 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALR  419 (466)
Q Consensus       346 --~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~na~~  419 (466)
                        .+..+++.|+||.++.+| ++.||+++++++++++...........+.....++...+    ..+....++..++++.
T Consensus       220 ~~~~~vi~~~s~SK~~~~pG-lRiG~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  298 (387)
T PRK07683        220 EMREKTIVINGLSKSHSMTG-WRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDY  298 (387)
T ss_pred             CCcCCeEEEeeccccccCcc-ceeEEEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence              134688999999999776 568999999999998887654333223333332222222    3343444556677888


Q ss_pred             HHHHHHcC
Q 012296          420 MAKILEAH  427 (466)
Q Consensus       420 La~~L~~~  427 (466)
                      +.+.|+++
T Consensus       299 ~~~~l~~~  306 (387)
T PRK07683        299 VYNRLISM  306 (387)
T ss_pred             HHHHHHHc
Confidence            88888764

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.83  E-value=4.2e-19  Score=183.05  Aligned_cols=217  Identities=22%  Similarity=0.262  Sum_probs=167.1

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC----
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----  283 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~----  283 (466)
                      .+.+++||+.+++++|.+.++.++||+.|+.+++.++ +++||+|+++..+|.++...+    ...|.+++++|.+    
T Consensus        24 g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai----~~~G~~pv~~Di~~~~~   99 (363)
T PF01041_consen   24 GPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAI----LWAGAEPVFVDIDPETL   99 (363)
T ss_dssp             SHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHH----HHTT-EEEEE-BETTTS
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHH----HHhccEEEEEeccCCcC
Confidence            5899999999999999999999999999999999988 689999999999999876443    4579999998743    


Q ss_pred             --CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccc--cccCCcEEEECC--cc
Q 012296          284 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA--LSLGADLVLHSA--TK  357 (466)
Q Consensus       284 --Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~--l~~gaDivv~S~--sK  357 (466)
                        |++.++++++++ +++|++   .+..|...|+++|.++|+++|++||.|.+++.+...+.  ...-.|+.++|+  +|
T Consensus       100 ~id~~~~~~~i~~~-t~ai~~---~h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~K  175 (363)
T PF01041_consen  100 NIDPEALEKAITPK-TKAILV---VHLFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFHPTK  175 (363)
T ss_dssp             SB-HHHHHHHHHTT-EEEEEE---E-GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEESSTTS
T ss_pred             CcCHHHHHHHhccC-ccEEEE---ecCCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecCCCCC
Confidence              799999999986 899987   44569999999999999999999999999876544332  222249999998  59


Q ss_pred             ccCccccceeEEEEeC-HHHHHHHHHHHHH---------------hC--CCchHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 012296          358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHV---------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNSTALR  419 (466)
Q Consensus       358 ~lgg~gdv~gG~ivg~-~eli~~l~~~~~~---------------~G--~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~  419 (466)
                      .+..+.   ||+++.+ +++.++++.++..               .|  ..++++.|.+++..|+.++.++++.+++++.
T Consensus       176 ~i~~ge---GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~  252 (363)
T PF01041_consen  176 IITTGE---GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQR  252 (363)
T ss_dssp             SS-SSS----EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CCcCCC---CeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            986553   7888886 5677777765431               11  2467888999999999999999999999999


Q ss_pred             HHHHHHcCCCeEEEeCC
Q 012296          420 MAKILEAHPKVKRVHYP  436 (466)
Q Consensus       420 La~~L~~~p~V~~V~yP  436 (466)
                      +.+.|.+.+.+.....|
T Consensus       253 y~~~L~~~~~~~~~~~~  269 (363)
T PF01041_consen  253 YREALAGIPGIKPPPIP  269 (363)
T ss_dssp             HHHHHTTGTTEEEEGCG
T ss_pred             HHHHHhcCCCccccccc
Confidence            99999999987654433

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.83  E-value=7.8e-19  Score=183.45  Aligned_cols=211  Identities=20%  Similarity=0.221  Sum_probs=158.6

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc--CCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHH
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME  286 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~--~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle  286 (466)
                      ++..++||++|++++|.+.+++++||++|+..++..+..  +||.|++....|+.+...+    ...|.++..++..|++
T Consensus        89 ~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~----~~~g~~~~~~~~~d~~  164 (406)
T PRK13393         89 NHYHVLLEAELADLHGKEAALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGI----RHSRAEKRIFRHNDPA  164 (406)
T ss_pred             hHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHH----HHcCCeEEEeCCCCHH
Confidence            456799999999999999999999999999999887765  7888887777777655433    2346677777777888


Q ss_pred             HHHHhhc---CCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc---------ccccCCcEEEEC
Q 012296          287 GLEAALN---NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------ALSLGADLVLHS  354 (466)
Q Consensus       287 ~Le~ai~---~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~---------~l~~gaDivv~S  354 (466)
                      .+++.++   +.++++|++++++|++|.+.|+++|.++|+++|+++|+|++++.++...         ......|+++.|
T Consensus       165 ~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~t  244 (406)
T PRK13393        165 DLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGT  244 (406)
T ss_pred             HHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEe
Confidence            8887775   2247899999999999999999999999999999999999976433110         011235888999


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHHHHH--hCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~--~G~~lsp~~a~l~l~~L~tl---~~R~~~~~~na~~La~~L~~~  427 (466)
                      ++|.++..    ||++++++++++.++.....  ++...+|..+..++..++.+   ..+.++..++.+++.+.|++.
T Consensus       245 lsKa~g~~----GG~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~  318 (406)
T PRK13393        245 LAKAFGVM----GGYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKA  318 (406)
T ss_pred             Cchhhccc----CceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Confidence            99999975    48999999998888765432  34445555444444444433   233455667888899988864

>PRK02948 cysteine desulfurase; Provisional

Probab=99.83  E-value=1.5e-19  Score=186.80  Aligned_cols=216  Identities=16%  Similarity=0.176  Sum_probs=155.5

Q ss_pred             CchhHHHHHHHHHhhhCC-CcEEEeCCH-HHHHHHHHHHHc----cCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          208 GNPTTVVVEEKMSALEGA-ESTVIMASG-MSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~-e~~l~~sSG-s~Ai~~al~all----~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      .....+++++.+++++|. ++.+++++| ++++..++.+++    ++||+|+++...|++....+. .++..|+++..++
T Consensus        41 ~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~-~~~~~g~~v~~v~  119 (381)
T PRK02948         41 ASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQ-SLESQGYTVTEIP  119 (381)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHH-HHHhCCCEEEEEe
Confidence            345678899999999986 456666555 688888887775    578999999999988665553 4566788877765


Q ss_pred             C-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC-CcccccccCCcEEEECC
Q 012296          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSA  355 (466)
Q Consensus       282 ~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~-~~~~~l~~gaDivv~S~  355 (466)
                      .     .|+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|+++++|+++..+ ...+...+++|+++.|+
T Consensus       120 ~~~~~~~d~~~l~~~l~~~-~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~  198 (381)
T PRK02948        120 VDKSGLIRLVDLERAITPD-TVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSA  198 (381)
T ss_pred             eCCCCCCCHHHHHHhcCCC-CEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcccCCCCEEEecH
Confidence            2     3789999999875 899999999999999999999999999999999999876543 23344467899999999


Q ss_pred             ccccCccccceeEEEEeCHHH-HHHHHH----HHHHhCCCchHHHHH---HHHHh-hHHHHHHHHHHHHHHHHHHHHHHc
Q 012296          356 TKFIGGHNDVLAGSISGSGKL-VTQIRN----LHHVLGGALNPNAAY---LIIRG-MKTLHLRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       356 sK~lgg~gdv~gG~ivg~~el-i~~l~~----~~~~~G~~lsp~~a~---l~l~~-L~tl~~R~~~~~~na~~La~~L~~  426 (466)
                      ||++|++|   .|+++.++++ +..+..    ......++.+.....   .+++. ++.++.+.++..++++++.+.|++
T Consensus       199 ~K~~gp~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~  275 (381)
T PRK02948        199 HKIYGPKG---VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQT  275 (381)
T ss_pred             HhcCCCCc---EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99998776   5777766654 111110    000112233332222   22222 244566667788889999999988


Q ss_pred             CC
Q 012296          427 HP  428 (466)
Q Consensus       427 ~p  428 (466)
                      ++
T Consensus       276 ~~  277 (381)
T PRK02948        276 LP  277 (381)
T ss_pred             CC
Confidence            75

>PRK08175 aminotransferase; Validated

Probab=99.83  E-value=1.1e-18  Score=181.53  Aligned_cols=211  Identities=16%  Similarity=0.174  Sum_probs=148.5

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          212 TVVVEEKMSALE----GA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~----e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ..+|++.+++++    |.    ++.+++++|+ +++..++..++++||+|++++|+|+.....+    ...|+++..++.
T Consensus        69 ~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~v~~  144 (395)
T PRK08175         69 IPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGA----VIAGAQVRSVPL  144 (395)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHH----HHcCCeEEEEec
Confidence            456777777654    32    2357777777 8998888899999999999999999754333    345777766643


Q ss_pred             C----CHHHHHHhhcC--CCceEEEEeCCCCCCcccccH---HHHHHHHHhcCCEEEEeCCCCCCCcc----cc-c--c-
Q 012296          283 A----DMEGLEAALNN--NNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ----KA-L--S-  345 (466)
Q Consensus       283 ~----Dle~Le~ai~~--~~tklV~lesP~NPtG~v~dl---~~Ia~la~~~gillIvDea~a~~~~~----~~-l--~-  345 (466)
                      .    +.++++++++.  .++++|++++|+||||.+.+.   ++|+++|+++|+++|+|++|......    .. .  . 
T Consensus       145 ~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~  224 (395)
T PRK08175        145 VEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPG  224 (395)
T ss_pred             ccCCCcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCC
Confidence            2    47888887763  248999999999999999986   68889999999999999997543211    11 1  1 


Q ss_pred             -cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHH---HHHHHHh-hHHHHHHHHHHHHHHHHH
Q 012296          346 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNA---AYLIIRG-MKTLHLRVQQQNSTALRM  420 (466)
Q Consensus       346 -~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~---a~l~l~~-L~tl~~R~~~~~~na~~L  420 (466)
                       .+..+++.|+||.||.+|. +.||+++++++++++.+.+.....+.+...   +..++.. -+.+....+.+.++++.+
T Consensus       225 ~~~~~i~~~S~SK~~g~pGl-RiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  303 (395)
T PRK08175        225 AKDVAVEFFTLSKSYNMAGW-RIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVL  303 (395)
T ss_pred             cccCEEEEeeccccccCcch-hheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence             1234778999999988874 578999999999988876654433322222   2222222 122444455667778888


Q ss_pred             HHHHHcC
Q 012296          421 AKILEAH  427 (466)
Q Consensus       421 a~~L~~~  427 (466)
                      .+.|+++
T Consensus       304 ~~~L~~~  310 (395)
T PRK08175        304 VKGLHEA  310 (395)
T ss_pred             HHHHHHc
Confidence            8999876

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.83  E-value=1.1e-18  Score=182.04  Aligned_cols=215  Identities=15%  Similarity=0.183  Sum_probs=152.7

Q ss_pred             hhHHHHHHHHHhhhCC---CcEEEeCCH-HHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC---
Q 012296          210 PTTVVVEEKMSALEGA---ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~---e~~l~~sSG-s~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---  282 (466)
                      ..++.+.+.+++..|.   .+.+++++| ++|+..++.+++++||+|++++|+|......+.    ..+..+..++.   
T Consensus        74 ~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~----~~~~~~~~v~~~~~  149 (402)
T PRK06107         74 ALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVL----ANDGTPVIVACPEE  149 (402)
T ss_pred             HHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHH----HcCCEEEEecCCcc
Confidence            3445566666666564   344666666 499999999999999999999998887544332    22333333321   


Q ss_pred             ----CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhc-CCEEEEeCCCCCCCcc-----cccc----
Q 012296          283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKK-GAIVCIDGTFATPLNQ-----KALS----  345 (466)
Q Consensus       283 ----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~-gillIvDea~a~~~~~-----~~l~----  345 (466)
                          .|+++++++++++ +++|++++|+||||.+++   +++|+++|+++ |+++|+|++|......     ....    
T Consensus       150 ~~~~~~~~~l~~~~~~~-~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~  228 (402)
T PRK06107        150 QGFKLTPEALEAAITPR-TRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPE  228 (402)
T ss_pred             cCCCCCHHHHHhhcCcC-ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcC
Confidence                3578999988764 899999999999999986   56778889998 9999999998642111     1111    


Q ss_pred             -cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHHH
Q 012296          346 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRM  420 (466)
Q Consensus       346 -~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~na~~L  420 (466)
                       .+..+++.|+||.|+.+| .+.||++++++++++++......+...+....+++...+    +.+....+...++++.+
T Consensus       229 ~~~~vi~~~S~SK~~~~pG-lRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  307 (402)
T PRK06107        229 LRDRVLVTNGVSKTYAMTG-WRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYA  307 (402)
T ss_pred             ccCCEEEEeccchhhcCcc-cceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence             124588999999998777 468999999999999988776555445555444443333    34555566678888889


Q ss_pred             HHHHHcCCCe
Q 012296          421 AKILEAHPKV  430 (466)
Q Consensus       421 a~~L~~~p~V  430 (466)
                      .+.|++++++
T Consensus       308 ~~~L~~~~g~  317 (402)
T PRK06107        308 LALLNAIPGL  317 (402)
T ss_pred             HHHHhcCCCC
Confidence            9999887543

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.83  E-value=6.3e-19  Score=180.00  Aligned_cols=214  Identities=16%  Similarity=0.158  Sum_probs=157.2

Q ss_pred             hhHHHHHHHHHhhhCCC--c-EEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC-----
Q 012296          210 PTTVVVEEKMSALEGAE--S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-----  281 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e--~-~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd-----  281 (466)
                      ...+++++.+++++|.+  + .+++++|++|+..++.+++++||+|++..+.|.+..  +...++..|.++.+++     
T Consensus        32 ~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  109 (356)
T cd06451          32 ALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDR--WADMAERYGADVDVVEKPWGE  109 (356)
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHH--HHHHHHHhCCCeEEeecCCCC
Confidence            44778999999999972  3 456677789999999999999999999988877631  2234556677777764     


Q ss_pred             CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEECCccccC
Q 012296          282 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFIG  360 (466)
Q Consensus       282 ~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S~sK~lg  360 (466)
                      ..|+++++++++++++++|++++|+||+|.+.|+++|.++|+++|+++++|++++.+. ..+....++|+++.|++|+++
T Consensus       110 ~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~  189 (356)
T cd06451         110 AVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALG  189 (356)
T ss_pred             CCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCccccccccCccEEEecCchhcc
Confidence            2478999999986348999999999999999999999999999999999999875432 334445689999999999999


Q ss_pred             ccccceeEEEEeCHHHHHHHHH----HH---------H------HhCCCchHHHHHHHHHhhHH-----HHHHHHHHHHH
Q 012296          361 GHNDVLAGSISGSGKLVTQIRN----LH---------H------VLGGALNPNAAYLIIRGMKT-----LHLRVQQQNST  416 (466)
Q Consensus       361 g~gdv~gG~ivg~~eli~~l~~----~~---------~------~~G~~lsp~~a~l~l~~L~t-----l~~R~~~~~~n  416 (466)
                      ++.  .+|+++.++++++.+..    ..         .      ..+++.++...+.+...++.     +....++..++
T Consensus       190 ~p~--g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~  267 (356)
T cd06451         190 APP--GLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRL  267 (356)
T ss_pred             CCC--CcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            875  36999999988877653    00         0      11122222222222222222     33445666778


Q ss_pred             HHHHHHHHHcC
Q 012296          417 ALRMAKILEAH  427 (466)
Q Consensus       417 a~~La~~L~~~  427 (466)
                      ++.+.+.|++.
T Consensus       268 ~~~l~~~L~~~  278 (356)
T cd06451         268 AKALREGLEAL  278 (356)
T ss_pred             HHHHHHHHHHc
Confidence            88899998875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.83  E-value=5e-19  Score=181.73  Aligned_cols=205  Identities=18%  Similarity=0.216  Sum_probs=143.3

Q ss_pred             HHHHHHHHHhhh----C---C-CcEEEeCCHH-HHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          212 TVVVEEKMSALE----G---A-ESTVIMASGM-SASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       212 ~~~Lee~LA~l~----g---~-e~~l~~sSGs-~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ..+|++.+++++    |   . .+.+++++|+ +++..++..+ +++||.|++++|+|......    +...|.++..++
T Consensus        58 ~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~v~  133 (357)
T TIGR03539        58 TPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVG----ALLAGATPVAAD  133 (357)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHH----HHhcCCEEeccC
Confidence            345666666654    3   3 3566677765 8888888777 79999999999999875433    345677777664


Q ss_pred             CCCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-cc---c-------ccC
Q 012296          282 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-KA---L-------SLG  347 (466)
Q Consensus       282 ~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-~~---l-------~~g  347 (466)
                        +++++.    ..++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|...... .+   +       ...
T Consensus       134 --~~~~l~----~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~  207 (357)
T TIGR03539       134 --DPTELD----PVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHT  207 (357)
T ss_pred             --ChhhcC----ccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccc
Confidence              444332    235899999999999999996   567889999999999999998642211 11   1       112


Q ss_pred             CcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHH
Q 012296          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKIL  424 (466)
Q Consensus       348 aDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~L  424 (466)
                      ..+++.|+||.++.+| .++||+++++++++++++.+...+...+......+...+   +.+....+...++++.+.+.|
T Consensus       208 ~vi~~~S~SK~~~~~G-~R~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L  286 (357)
T TIGR03539       208 GLLAVHSLSKRSNLAG-YRAGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPAL  286 (357)
T ss_pred             cEEEEeccccccCCCc-eeEEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3488999999998777 468999999999999887776555544544444333333   223333455567778888888


Q ss_pred             HcC
Q 012296          425 EAH  427 (466)
Q Consensus       425 ~~~  427 (466)
                      +++
T Consensus       287 ~~~  289 (357)
T TIGR03539       287 EKA  289 (357)
T ss_pred             HHc
Confidence            875

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.83  E-value=5.3e-19  Score=180.80  Aligned_cols=216  Identities=16%  Similarity=0.167  Sum_probs=153.2

Q ss_pred             hhHHHHHHHHHhhhCCC-cEEEeCCH-HHHHHHHHHHHcc----CC-CEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          210 PTTVVVEEKMSALEGAE-STVIMASG-MSASTVMLLALVP----AG-GHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e-~~l~~sSG-s~Ai~~al~all~----~G-d~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ...+++++.+++++|.+ +.+++++| ++++..++.++..    +| ++|++....|++....+. .++..|++++.++.
T Consensus        42 ~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~-~~~~~G~~v~~v~~  120 (353)
T TIGR03235        42 KAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIR-ALERNGFTVTYLPV  120 (353)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHH-HHHhcCCEEEEEcc
Confidence            45678999999999984 44555554 5899888887753    56 789999888988665553 34556888888763


Q ss_pred             -----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECCc
Q 012296          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSAT  356 (466)
Q Consensus       283 -----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~s  356 (466)
                           .|+++|+++++++ +++|++++++||||.+.|+++|.++|+++|+++++|++++.+.. .+...+++|+++.|++
T Consensus       121 ~~~~~~d~~~l~~~l~~~-~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~  199 (353)
T TIGR03235       121 DESGRIDVDELADAIRPD-TLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGH  199 (353)
T ss_pred             CCCCcCCHHHHHHhCCCC-CEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehh
Confidence                 3789999999875 89999999999999999999999999999999999999765433 3444568999999999


Q ss_pred             cccCccccceeEEEEeCHHHHHH--HHHHH-------HHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHH
Q 012296          357 KFIGGHNDVLAGSISGSGKLVTQ--IRNLH-------HVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRMAKI  423 (466)
Q Consensus       357 K~lgg~gdv~gG~ivg~~eli~~--l~~~~-------~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~na~~La~~  423 (466)
                      |+++++|   .|+++.+++....  ++...       ....++.+....+.+...+    +.++.+.+++.+.++.+.+.
T Consensus       200 K~~gp~g---~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~  276 (353)
T TIGR03235       200 KIYGPKG---IGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDA  276 (353)
T ss_pred             hcCCCCc---eEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            9976554   5777777654322  11100       0111222222211112222    23455667778888888888


Q ss_pred             HHcCCCeE
Q 012296          424 LEAHPKVK  431 (466)
Q Consensus       424 L~~~p~V~  431 (466)
                      |++ ++++
T Consensus       277 l~~-~g~~  283 (353)
T TIGR03235       277 LQT-LGVK  283 (353)
T ss_pred             hcc-CCeE
Confidence            876 5654

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.83  E-value=2.9e-19  Score=184.84  Aligned_cols=219  Identities=18%  Similarity=0.210  Sum_probs=147.7

Q ss_pred             chhHHHHHHHHHh---hhCC--CcEEEeC-CHHHHHHHHHHHHc-----cC-CCEEEEcCCCCcchHHHHHhhcccCCce
Q 012296          209 NPTTVVVEEKMSA---LEGA--ESTVIMA-SGMSASTVMLLALV-----PA-GGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (466)
Q Consensus       209 np~~~~Lee~LA~---l~g~--e~~l~~s-SGs~Ai~~al~all-----~~-Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~  276 (466)
                      .+....+++.+++   ..++  .+.++++ ++++++..++.++.     ++ +++|+++...|++....+ ..++..|++
T Consensus        38 ~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~-~~~~~~G~~  116 (382)
T TIGR03403        38 TATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATC-AFLESLGVE  116 (382)
T ss_pred             HHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHH-HHHHHCCCE
Confidence            3444445444444   4453  3445554 55589998888762     45 478999999998866554 345667888


Q ss_pred             EEEeCCC-----CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC-CcccccccCCcE
Q 012296          277 ATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADL  350 (466)
Q Consensus       277 v~~vd~~-----Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~-~~~~~l~~gaDi  350 (466)
                      +++++..     |+++++++++++ +++|++++|+||||.+.|+++|.++|+++|+++++|++++.+ ...+...+++|+
T Consensus       117 v~~v~~~~~g~~d~~~l~~~i~~~-t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~  195 (382)
T TIGR03403       117 VTYLPINEQGTITAEQVREAITEK-TALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDF  195 (382)
T ss_pred             EEEEecCCCCCCCHHHHHHhcccC-CeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCccccCCCE
Confidence            8887642     789999999875 899999999999999999999999999999999999997754 334555678999


Q ss_pred             EEECCccccCccccceeEEEEeCHHHH--HHHHH---HHHHhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHHHHHH
Q 012296          351 VLHSATKFIGGHNDVLAGSISGSGKLV--TQIRN---LHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMA  421 (466)
Q Consensus       351 vv~S~sK~lgg~gdv~gG~ivg~~eli--~~l~~---~~~~~G~~lsp~~a~l~l~~L~----tl~~R~~~~~~na~~La  421 (466)
                      ++.|+||++|++|   .|+++.++++.  ..+..   ......++.+....+.+...++    .++...++..+.++++.
T Consensus       196 ~~~s~~K~~gp~G---~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~  272 (382)
T TIGR03403       196 LSFSAHKFHGPKG---VGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLE  272 (382)
T ss_pred             EEEcchhhCCCCc---eEEEEECCCCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            9999999988776   46665544321  00000   0000112223222222222222    24445566777888899


Q ss_pred             HHHHcCCCeEE
Q 012296          422 KILEAHPKVKR  432 (466)
Q Consensus       422 ~~L~~~p~V~~  432 (466)
                      +.|+++|++..
T Consensus       273 ~~L~~~~~~~~  283 (382)
T TIGR03403       273 DALLELPDVFV  283 (382)
T ss_pred             HHHhcCCCEEE
Confidence            99988888753

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.83  E-value=3.3e-19  Score=184.03  Aligned_cols=215  Identities=18%  Similarity=0.214  Sum_probs=155.4

Q ss_pred             cCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      .+|+++....|++.++++++. .+.+++++|+ +++..++.+++++||+|++..|.|+....    .++..|+++..++.
T Consensus        66 ~~Y~~~~g~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~~~~----~~~~~g~~~~~v~~  141 (371)
T PRK05166         66 RLYPDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHED----YPTMMGARVERVTV  141 (371)
T ss_pred             hcCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHH----HHHHcCCeEEEeec
Confidence            345555556899999999987 3567777776 89999989999999999999999987543    34456777777643


Q ss_pred             -----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHh--cCCEEEEeCCCCCCCcc----cc---cc-c-
Q 012296          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ----KA---LS-L-  346 (466)
Q Consensus       283 -----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~--~gillIvDea~a~~~~~----~~---l~-~-  346 (466)
                           .|+++++++++++ +++|++++|+||||.+++.+++.++++.  +++++|+|++|......    ..   .. . 
T Consensus       142 ~~~~~~~~~~l~~~~~~~-~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~  220 (371)
T PRK05166        142 TPDLGFDLDALCAAVARA-PRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARG  220 (371)
T ss_pred             CCCCCCCHHHHHHhhhcC-CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcC
Confidence                 3689999998774 8999999999999999998777777664  47899999997643311    11   11 1 


Q ss_pred             CCcEEEECCccccCccccceeEEEE-eCHHHHHHHHHHHHHhCCCchHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHH
Q 012296          347 GADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAAYLI---IRGMKTLHLRVQQQNSTALRMAK  422 (466)
Q Consensus       347 gaDivv~S~sK~lgg~gdv~gG~iv-g~~eli~~l~~~~~~~G~~lsp~~a~l~---l~~L~tl~~R~~~~~~na~~La~  422 (466)
                      ...+++.|+||.|+.+|. +.||++ .++++++.+++.+..++  .+.....++   +..-+.++..++...++++.+.+
T Consensus       221 ~~vi~i~SfSK~~~l~Gl-RiG~~i~~~~~l~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~  297 (371)
T PRK05166        221 LPWIVLRTFSKAYGLAGL-RVGYGLVSDPELVGLLDRVRTPFN--VNGAAQAAALAALDDEEHLAKGVALALAERERLKK  297 (371)
T ss_pred             CCEEEEeechHhhhcchh-heeeeecCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            235889999999997774 578865 47888888876554333  233332222   22224455556677788888999


Q ss_pred             HHHcC
Q 012296          423 ILEAH  427 (466)
Q Consensus       423 ~L~~~  427 (466)
                      .|+++
T Consensus       298 ~L~~~  302 (371)
T PRK05166        298 ELAEM  302 (371)
T ss_pred             HHHHC
Confidence            99876

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.83  E-value=4.5e-19  Score=182.00  Aligned_cols=216  Identities=17%  Similarity=0.178  Sum_probs=150.8

Q ss_pred             CCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC
Q 012296          206 RYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  283 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~  283 (466)
                      +|+.+....|++.+|++++. .+.+++++|+ +++..++..+ .+|+ +++.+|.|....    ..++..|+++..++..
T Consensus        51 ~y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l-~~g~-viv~~P~y~~~~----~~~~~~g~~~~~v~~~  124 (356)
T PRK08056         51 RYPDVEYRHLHQALARHHQVPASWILAGNGETESIFAVVSGL-KPRR-AMIVTPGFAEYR----RALQQVGCEIRRYSLR  124 (356)
T ss_pred             cCcCccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh-CCCC-EEEeCCCcHHHH----HHHHHcCCeEEEEecc
Confidence            34555578999999999987 3456677776 8888888775 6776 667788887644    3345567777766431


Q ss_pred             -----CH-HHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc-----cc-ccCC
Q 012296          284 -----DM-EGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-----AL-SLGA  348 (466)
Q Consensus       284 -----Dl-e~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~-----~l-~~ga  348 (466)
                           ++ +++.+.+++ ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.......     .+ ....
T Consensus       125 ~~~~~~~~~~~~~~~~~-~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  203 (356)
T PRK08056        125 EADGWQLTDAILEALTP-DLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPH  203 (356)
T ss_pred             cccCCCccHHHHHhccC-CCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCC
Confidence                 22 355566665 4899999999999999998   7789999999999999999986543211     11 2345


Q ss_pred             cEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKIL  424 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~L  424 (466)
                      ++++.|+||+++.+|. +.||+++ ++++++.+++....  ...+.+.++++...+   ..+....++..++++.+.+.|
T Consensus       204 ~i~~~S~SK~~~~~G~-RiG~~v~~~~~~~~~l~~~~~~--~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L  280 (356)
T PRK08056        204 LWVLRSLTKFYAIPGL-RLGYLVNSDDAAVARMRRQQMP--WSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQAL  280 (356)
T ss_pred             EEEEEechhhccCcch-hheeeecCCHHHHHHHHHhCCC--CchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999998874 5788887 56777777654322  233344443333333   334344566678888999999


Q ss_pred             HcCCCeE
Q 012296          425 EAHPKVK  431 (466)
Q Consensus       425 ~~~p~V~  431 (466)
                      ++++++.
T Consensus       281 ~~~~~~~  287 (356)
T PRK08056        281 CALPLLT  287 (356)
T ss_pred             hcCCCcE
Confidence            8887653

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.83  E-value=3.5e-18  Score=176.95  Aligned_cols=210  Identities=13%  Similarity=0.079  Sum_probs=165.3

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-----
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----  282 (466)
                      .+.++++++.+++++|.+++++++||++|+.+++..+ +++||+|+++.++|.++...+    ...|+++.+++.     
T Consensus        30 ~~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~----~~~G~~~v~~d~d~~~~  105 (375)
T PRK11706         30 GGFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAF----VLRGAKIVFVDIRPDTM  105 (375)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHH----HHcCCEEEEEecCCCcC
Confidence            4778999999999999999999999999998887766 689999999999999876443    456888888763     


Q ss_pred             -CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc--ccccccCCcEEEECCc--c
Q 012296          283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN--QKALSLGADLVLHSAT--K  357 (466)
Q Consensus       283 -~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~--~~~l~~gaDivv~S~s--K  357 (466)
                       .|+++++++++++ +++|++.   |++|...|+++|.++|+++|+++|+|++++.+..  ..+.....|+.++|++  |
T Consensus       106 ~~d~~~le~~i~~~-tk~i~~~---~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K  181 (375)
T PRK11706        106 NIDETLIEAAITPK-TRAIVPV---HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETK  181 (375)
T ss_pred             CcCHHHHHHhcCCC-CeEEEEe---CCCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCCCCc
Confidence             3689999999874 9999864   5689999999999999999999999999876542  2233333588888877  9


Q ss_pred             ccCccccceeEEEEeCHHHHHHHHHHHHH-------------------hCC--CchHHHHHHHHHhhHHHHHHHHHHHHH
Q 012296          358 FIGGHNDVLAGSISGSGKLVTQIRNLHHV-------------------LGG--ALNPNAAYLIIRGMKTLHLRVQQQNST  416 (466)
Q Consensus       358 ~lgg~gdv~gG~ivg~~eli~~l~~~~~~-------------------~G~--~lsp~~a~l~l~~L~tl~~R~~~~~~n  416 (466)
                      .++.+.  .|++++.++++.++++.++..                   .|.  .++.+.+.+++..++.++...++..++
T Consensus       182 ~l~~g~--gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~  259 (375)
T PRK11706        182 NYTAGE--GGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADRINQRRLAL  259 (375)
T ss_pred             cccccC--CeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            997632  245666677888877766531                   122  234566777777888898888889999


Q ss_pred             HHHHHHHHHcCC
Q 012296          417 ALRMAKILEAHP  428 (466)
Q Consensus       417 a~~La~~L~~~p  428 (466)
                      ++.+.+.|.+.+
T Consensus       260 ~~~~~~~L~~~~  271 (375)
T PRK11706        260 WQRYYDALAPLA  271 (375)
T ss_pred             HHHHHHHhcCCC
Confidence            999999998776

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.83  E-value=1.4e-18  Score=180.35  Aligned_cols=213  Identities=13%  Similarity=0.167  Sum_probs=150.0

Q ss_pred             hHHHHHHHHHhhhC-----C--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          211 TTVVVEEKMSALEG-----A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       211 ~~~~Lee~LA~l~g-----~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      ...++++.++++++     .  ++.+++++|++|+..++..++++||+|++++|.|......    ++..|+++..++. 
T Consensus        67 g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~v~~~  142 (397)
T PRK07568         67 GIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGF----ATSAGVKIVPVTTK  142 (397)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHH----HHHcCCEEEEeecC
Confidence            35678888888762     2  4455555566999999999999999999999999865432    3456777666642 


Q ss_pred             -------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----cccc--
Q 012296          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS--  345 (466)
Q Consensus       283 -------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----~~l~--  345 (466)
                             .++++++++++++ +++|++++|+||||.+++   +++|+++|+++|+++|+|++|......     ....  
T Consensus       143 ~~~g~~~~~~~~l~~~~~~~-~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~  221 (397)
T PRK07568        143 IEEGFHLPSKEEIEKLITPK-TKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLE  221 (397)
T ss_pred             cccCCCCCCHHHHHHhcCcc-ceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcC
Confidence                   1468899988774 899999999999999985   788999999999999999998643211     1111  


Q ss_pred             --cCCcEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHH
Q 012296          346 --LGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTAL  418 (466)
Q Consensus       346 --~gaDivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~na~  418 (466)
                        ....+++.|+||.++++|. +.|++++ ++++++.+...... ....+.....++...+    +.+....+...++++
T Consensus       222 ~~~~~~i~~~S~SK~~~~~G~-R~G~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  299 (397)
T PRK07568        222 GLEDRVIIIDSVSKRYSACGA-RIGCLISKNKELIAAAMKLCQA-RLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRD  299 (397)
T ss_pred             CCcCCEEEEecchhhccCCCc-ceEEEecCCHHHHHHHHHHhhc-cCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence              1234889999999998774 5788887 47888776654332 1222333322222222    334445556778888


Q ss_pred             HHHHHHHcCCCe
Q 012296          419 RMAKILEAHPKV  430 (466)
Q Consensus       419 ~La~~L~~~p~V  430 (466)
                      .+.+.|++++++
T Consensus       300 ~l~~~L~~~~~~  311 (397)
T PRK07568        300 ILYEELNKIPGV  311 (397)
T ss_pred             HHHHHHhcCCCc
Confidence            999999887654

>PRK08363 alanine aminotransferase; Validated

Probab=99.83  E-value=2.9e-18  Score=178.46  Aligned_cols=217  Identities=16%  Similarity=0.138  Sum_probs=150.4

Q ss_pred             chhHHHHHHHHHhhh----CC---CcEEEeCC-HHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          209 NPTTVVVEEKMSALE----GA---ESTVIMAS-GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       209 np~~~~Lee~LA~l~----g~---e~~l~~sS-Gs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      .+...+|++.+++++    |.   .+.+++++ +++|+.+++.+++++||+|++++|+|......+    ...|..+..+
T Consensus        69 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~v~~  144 (398)
T PRK08363         69 SEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLV----KFYGGVPVEY  144 (398)
T ss_pred             CCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHH----HHcCCEEEEe
Confidence            345677888888876    31   23444555 459999999999999999999999999865433    3445554444


Q ss_pred             -C------CCCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----ccc-
Q 012296          281 -D------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----ALS-  345 (466)
Q Consensus       281 -d------~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----~l~-  345 (466)
                       +      ..|+++++++++++ +++|++++|+||||.+.+   +++|.++|+++|+++|+|++|.......    ... 
T Consensus       145 ~~~~~~~~~~d~~~l~~~~~~~-~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~  223 (398)
T PRK08363        145 RTIEEEGWQPDIDDIRKKITEK-TKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSL  223 (398)
T ss_pred             ccccccCCcCCHHHHHhhCCcc-eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHc
Confidence             1      13688899988774 899999999999999987   8889999999999999999986432211    111 


Q ss_pred             --cCCcEEEECCccccCccccceeEEEEe--CHHHHHHHHHHHHHh---CCCchHHHHHH---HHHh-hHHHHHHHHHHH
Q 012296          346 --LGADLVLHSATKFIGGHNDVLAGSISG--SGKLVTQIRNLHHVL---GGALNPNAAYL---IIRG-MKTLHLRVQQQN  414 (466)
Q Consensus       346 --~gaDivv~S~sK~lgg~gdv~gG~ivg--~~eli~~l~~~~~~~---G~~lsp~~a~l---~l~~-L~tl~~R~~~~~  414 (466)
                        ....+++.|+||.++.+| .+.||+++  ++++++.++......   ....+.....+   ++.. .+.+....++..
T Consensus       224 ~~~~~vi~~~SfSK~~~~~G-lRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~  302 (398)
T PRK08363        224 TKDVPVIVMNGLSKVYFATG-WRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLK  302 (398)
T ss_pred             CcCCcEEEEecchhccCCcc-ceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHH
Confidence              123477899999998887 45788876  677776665443221   11223332222   2222 244555566777


Q ss_pred             HHHHHHHHHHHcCCCeE
Q 012296          415 STALRMAKILEAHPKVK  431 (466)
Q Consensus       415 ~na~~La~~L~~~p~V~  431 (466)
                      ++++.+.+.|+++|.+.
T Consensus       303 ~~~~~l~~~L~~~~~~~  319 (398)
T PRK08363        303 ERRDYIYKRLNEIPGIS  319 (398)
T ss_pred             HHHHHHHHHHhcCCCCE
Confidence            88888999998886643

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.83  E-value=9.4e-19  Score=179.59  Aligned_cols=210  Identities=21%  Similarity=0.244  Sum_probs=173.2

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC----
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----  283 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~----  283 (466)
                      .|.+.++|+.+++++|.+.++.++||+.|+.++|.++ +++||+||++..+|..+.+.+    -..|.++.++|.+    
T Consensus        33 G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i----~~~Ga~PVFvDid~~T~  108 (374)
T COG0399          33 GPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAV----LLVGAKPVFVDIDPDTL  108 (374)
T ss_pred             ChHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHH----HHcCCeEEEEecCCccc
Confidence            5889999999999999999999999999999999966 699999999999999887544    3468899998854    


Q ss_pred             --CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccC--CcEEEECC--cc
Q 012296          284 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSA--TK  357 (466)
Q Consensus       284 --Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~g--aDivv~S~--sK  357 (466)
                        |++.||++|+++ ||+|+.   -+-.|...|+++|.++|++||++||.|.+++.+...+.-..|  .|+.++||  +|
T Consensus       109 nid~~~ie~aIt~~-tKAIip---Vhl~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K  184 (374)
T COG0399         109 NIDPDLIEAAITPR-TKAIIP---VHLAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATK  184 (374)
T ss_pred             CCCHHHHHHHcccC-CeEEEE---ehhccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCC
Confidence              899999999996 999985   446699999999999999999999999997765543333333  47888887  58


Q ss_pred             ccCccccceeEEEEeCH-HHHHHHHHHHHH--------------hC--CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 012296          358 FIGGHNDVLAGSISGSG-KLVTQIRNLHHV--------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNSTALRM  420 (466)
Q Consensus       358 ~lgg~gdv~gG~ivg~~-eli~~l~~~~~~--------------~G--~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~L  420 (466)
                      .+...   -||+++.++ ++.++++.++..              .|  ..++.+.|.+.+..|+.++.++++..++++.+
T Consensus       185 ~ittg---EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y  261 (374)
T COG0399         185 NLTTG---EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIY  261 (374)
T ss_pred             Ccccc---CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88766   378888864 677777765431              12  23566788888899999999999999999999


Q ss_pred             HHHHHcCCC
Q 012296          421 AKILEAHPK  429 (466)
Q Consensus       421 a~~L~~~p~  429 (466)
                      .+.|++.+.
T Consensus       262 ~~~l~~~~~  270 (374)
T COG0399         262 AEALKGLPG  270 (374)
T ss_pred             HHHhhcCCC
Confidence            999998764

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.82  E-value=1e-18  Score=179.62  Aligned_cols=204  Identities=18%  Similarity=0.211  Sum_probs=145.3

Q ss_pred             HHHHHHHHhhh----C---C-CcEEEeCCHH-HHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          213 VVVEEKMSALE----G---A-ESTVIMASGM-SASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       213 ~~Lee~LA~l~----g---~-e~~l~~sSGs-~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      .+|++.+++++    |   . .+.+++++|+ +++..++..+ +++||+|++++|.|+.....    ....|+++..++ 
T Consensus        65 ~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~~~-  139 (364)
T PRK07865         65 PELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVG----ARLAGATVVRAD-  139 (364)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHH----HHhcCCEEEecC-
Confidence            35556666654    4   3 3567777777 8888877777 79999999999999875533    345688877664 


Q ss_pred             CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----cc-------ccCC
Q 012296          283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----AL-------SLGA  348 (466)
Q Consensus       283 ~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----~l-------~~ga  348 (466)
                       ++++++.   . ++++|++++|+||||.+++   +++|.++|+++|+++|+||+|.......    .+       ....
T Consensus       140 -~~~~l~~---~-~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~  214 (364)
T PRK07865        140 -SLTELGP---Q-RPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTG  214 (364)
T ss_pred             -ChhhCCc---c-cceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccce
Confidence             3444332   3 4899999999999999987   5678888999999999999987532211    01       1123


Q ss_pred             cEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILE  425 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~L~  425 (466)
                      .+++.|+||.++.+| .+.||++++++++++++..+...+...+.....++...+   +.+....+...++++.+.+.|+
T Consensus       215 ~i~~~S~SK~~~~~G-lRiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~  293 (364)
T PRK07865        215 LLAVHSLSKQSNLAG-YRAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALE  293 (364)
T ss_pred             EEEEeechhccCCCc-eeeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999998777 468999999999999988776665555554444433333   3344445566777888888888


Q ss_pred             cC
Q 012296          426 AH  427 (466)
Q Consensus       426 ~~  427 (466)
                      ++
T Consensus       294 ~~  295 (364)
T PRK07865        294 AA  295 (364)
T ss_pred             Hc
Confidence            75

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.82  E-value=1.6e-18  Score=182.13  Aligned_cols=221  Identities=19%  Similarity=0.208  Sum_probs=154.3

Q ss_pred             CCccccCC--CchhHHHHHH----HHHhhhCCCcEEE-eCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhccc
Q 012296          200 ASFEYGRY--GNPTTVVVEE----KMSALEGAESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK  272 (466)
Q Consensus       200 ~~~~Y~R~--~np~~~~Lee----~LA~l~g~e~~l~-~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~  272 (466)
                      .++.++|+  ++|+.++||+    .+++++|.+.+++ ++||+.|+.+++.+++++||+|++++..|.+....- .....
T Consensus        58 ~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g-~~~~~  136 (416)
T PRK13034         58 EGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHG-AKVSL  136 (416)
T ss_pred             CCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecC-Cccee
Confidence            35667776  6899999999    9999999998866 589999999999999999999999999998732100 00000


Q ss_pred             CCceE--EEeCC------CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc----
Q 012296          273 MGITA--TVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----  340 (466)
Q Consensus       273 ~Gi~v--~~vd~------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~----  340 (466)
                      .+...  ..++.      .|++++++.++..++++|+++.+.  +|...|+++|.++|+++|+++++|++++.+..    
T Consensus       137 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~~--~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~  214 (416)
T PRK13034        137 SGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSA--YPRELDFARFREIADEVGALLMVDMAHIAGLVAAGE  214 (416)
T ss_pred             ccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCCc--cccccCHHHHHHHHHHcCCEEEEeCcccccCcccCC
Confidence            11111  12222      588999998865458999986654  47888999999999999999999999654432    


Q ss_pred             -ccccccCCcEEEECCccccCccccceeEEEEeCHH-HHHHHHHHHHH--hCCCchHHHHHHHHHhhHHH----HHHHHH
Q 012296          341 -QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHV--LGGALNPNAAYLIIRGMKTL----HLRVQQ  412 (466)
Q Consensus       341 -~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~e-li~~l~~~~~~--~G~~lsp~~a~l~l~~L~tl----~~R~~~  412 (466)
                       ..++. ++|++++|++|+++|+.   ||+++++++ +.++++.....  .+....+..+.+++..++.+    ..+.++
T Consensus       215 ~~~~~~-~~Di~~~s~~K~l~g~~---GG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~  290 (416)
T PRK13034        215 HPNPFP-HAHVVTTTTHKTLRGPR---GGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQ  290 (416)
T ss_pred             CCCCCC-CceEEEEeCcccCCCCC---CeEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHH
Confidence             23333 48999999999998774   688877654 44444443221  11233333333332222222    334678


Q ss_pred             HHHHHHHHHHHHHcC
Q 012296          413 QNSTALRMAKILEAH  427 (466)
Q Consensus       413 ~~~na~~La~~L~~~  427 (466)
                      ..+|++++++.|++.
T Consensus       291 l~~~a~~l~~~L~~~  305 (416)
T PRK13034        291 VIANAQALAEVLKER  305 (416)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            889999999999876

>PLN02822 serine palmitoyltransferase

Probab=99.82  E-value=1.1e-18  Score=186.40  Aligned_cols=215  Identities=17%  Similarity=0.158  Sum_probs=164.2

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHH
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~  287 (466)
                      .++...+||++|+++++.++.+++++|..++..++.+++++||.|+++...|..+...    +...+.++.+++..|.+.
T Consensus       152 ~~~~~~~Lee~La~~~~~~~~i~~s~G~~a~~sai~a~~~~gd~Ii~d~~~H~s~~~~----~~ls~~~~~~~~~nd~~~  227 (481)
T PLN02822        152 TIDVHLDCETKIAKFLGTPDSILYSYGLSTIFSVIPAFCKKGDIIVADEGVHWGIQNG----LYLSRSTIVYFKHNDMES  227 (481)
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHhCCCCCEEEEeCCccHHHHHH----HHHcCCeEEEECCCCHHH
Confidence            3566889999999999998899999999889999999999999999887777654322    233466788888888777


Q ss_pred             HHHhhcC--------CCc-eEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-------cccc---cCC
Q 012296          288 LEAALNN--------NNV-SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------KALS---LGA  348 (466)
Q Consensus       288 Le~ai~~--------~~t-klV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~-------~~l~---~ga  348 (466)
                      ++..+++        .++ ++|++|+++|++|.+.|+++|.++|++||+++|+||++..+...       .-..   ...
T Consensus       228 l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~  307 (481)
T PLN02822        228 LRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKI  307 (481)
T ss_pred             HHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCC
Confidence            7666531        124 79999999999999999999999999999999999998744321       1011   246


Q ss_pred             cEEEECCccccCccccceeEEEEeCHHHHHHHHHHH--HHhCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKI  423 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~--~~~G~~lsp~~a~l~l~~L~tl---~~R~~~~~~na~~La~~  423 (466)
                      |+++.|++|.++..    ||++++++++++.++...  ..+++.++|..+..++..++.+   ...+++.+++.+.+.+.
T Consensus       308 dii~~s~sKalg~~----GG~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~  383 (481)
T PLN02822        308 DIITAAMGHALATE----GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKG  383 (481)
T ss_pred             eEEEecchhhhhhC----CeEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            89999999999865    499999999998876432  2344555566555554444433   45677888999999999


Q ss_pred             HHcCCCe
Q 012296          424 LEAHPKV  430 (466)
Q Consensus       424 L~~~p~V  430 (466)
                      |++.+++
T Consensus       384 L~~~~g~  390 (481)
T PLN02822        384 LSDIPGL  390 (481)
T ss_pred             HHhcCCc
Confidence            9886543

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.82  E-value=7.4e-19  Score=179.66  Aligned_cols=208  Identities=20%  Similarity=0.241  Sum_probs=149.0

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCC--cEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          204 YGRYGNPTTVVVEEKMSALEGAE--STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~e--~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      +.+|+++. ..|++.||+++|..  +.|++++|+ +++..+ ..++++|| |++..|+|+.....    ++..|+++..+
T Consensus        48 ~~~Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l-~~~~~~g~-v~v~~P~y~~y~~~----~~~~g~~~~~v  120 (339)
T PRK06959         48 WRRLPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRAL-PALLPRGR-VGIAPLAYSEYAPA----FARHGHRVVPL  120 (339)
T ss_pred             HHhCCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHH-HHhcCCCe-EEEcCCCcHHHHHH----HHHCCCEEEee
Confidence            45678887 89999999999983  578888888 777755 45677877 88899999876533    44568888777


Q ss_pred             CCCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHH---HHhcCCEEEEeCCCCCCCccccc----ccCCcEEEE
Q 012296          281 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL---CHKKGAIVCIDGTFATPLNQKAL----SLGADLVLH  353 (466)
Q Consensus       281 d~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~l---a~~~gillIvDea~a~~~~~~~l----~~gaDivv~  353 (466)
                      +.++ +.    +.+ .++++++++||||||.+.+.+++.++   |++++.++|+||+|........+    ....-+++.
T Consensus       121 ~~~~-~~----~~~-~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~  194 (339)
T PRK06959        121 DEAA-DT----LPA-ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLR  194 (339)
T ss_pred             cccc-hh----ccc-cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEe
Confidence            6543 22    333 36899999999999999987666655   56789999999998764321111    122348899


Q ss_pred             CCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       354 S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      |+||.||.+| ++.||+++++++++++++.+..++.  +.....++...+   .......++..++++.+.+.|+++
T Consensus       195 SfSK~~gl~G-lRiGy~v~~~~li~~l~~~~~~~~v--s~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~  268 (339)
T PRK06959        195 SVGKFFGLAG-VRAGFVLAAPALLAALRDALGAWTV--SGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAH  268 (339)
T ss_pred             cChhhcCCcc-hheEEEecCHHHHHHHHHhcCCCCC--cHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999887 4589999999999999887654432  333333333222   334445566777888999999886

>PRK09265 aminotransferase AlaT; Validated

Probab=99.82  E-value=2.3e-18  Score=179.68  Aligned_cols=213  Identities=13%  Similarity=0.148  Sum_probs=141.8

Q ss_pred             HHHHHHHHHhhh------CC-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe--C
Q 012296          212 TVVVEEKMSALE------GA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI--D  281 (466)
Q Consensus       212 ~~~Lee~LA~l~------g~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v--d  281 (466)
                      ...|++.+++++      +. .+.+++++|+ +++..++.+++++||+|++++|+|......+    ...|..+..+  +
T Consensus        74 ~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~v~~~~~  149 (404)
T PRK09265         74 LFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAV----SLSGGKPVHYLCD  149 (404)
T ss_pred             cHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHH----HHcCCEEEEEecc
Confidence            457888888876      33 3456677776 7888999999999999999999999755433    2345544433  2


Q ss_pred             C-----CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----ccccc--
Q 012296          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALSL--  346 (466)
Q Consensus       282 ~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----~~l~~--  346 (466)
                      .     .|+++++++++++ +++|++++|+||||.+++   +++|.++|+++|+++|+|++|......     ....+  
T Consensus       150 ~~~~~~~d~~~l~~~~~~~-~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  228 (404)
T PRK09265        150 EEAGWFPDLDDIRSKITPR-TKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAP  228 (404)
T ss_pred             cccCCCCCHHHHHHhcccc-ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCC
Confidence            1     3688999988774 899999999999999998   888999999999999999997643211     11111  


Q ss_pred             C-CcEEEECCccccCccccceeEEEEe--CHHH----HHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHH---HHHHH
Q 012296          347 G-ADLVLHSATKFIGGHNDVLAGSISG--SGKL----VTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHL---RVQQQ  413 (466)
Q Consensus       347 g-aDivv~S~sK~lgg~gdv~gG~ivg--~~el----i~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~---R~~~~  413 (466)
                      . .-+++.|+||.++.+|. +.||++.  ++++    ++.+.... ......+.....++...+   +.+..   ..++.
T Consensus       229 ~~~vi~~~S~SK~~~~pGl-RiG~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  306 (404)
T PRK09265        229 DLLCVTFNGLSKAYRVAGF-RVGWMVLSGPKKHAKGYIEGLDMLA-SMRLCANVPAQHAIQTALGGYQSINELILPGGRL  306 (404)
T ss_pred             CceEEEEecchhhccCccc-ceEEEEEeCchHHHHHHHHHHHHHh-ccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            1 23678999999998884 4677774  4443    33333221 112222333222222222   22221   22355


Q ss_pred             HHHHHHHHHHHHcCCCeE
Q 012296          414 NSTALRMAKILEAHPKVK  431 (466)
Q Consensus       414 ~~na~~La~~L~~~p~V~  431 (466)
                      .++++.+.+.|++++++.
T Consensus       307 ~~~r~~~~~~L~~~~~~~  324 (404)
T PRK09265        307 YEQRDRAWELLNAIPGVS  324 (404)
T ss_pred             HHHHHHHHHHHhcCCCCc
Confidence            677888889998876543

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.82  E-value=1.8e-18  Score=184.88  Aligned_cols=215  Identities=17%  Similarity=0.173  Sum_probs=148.0

Q ss_pred             hHHHHHHHHHhhhC----C---CcEEEeCCHH-HHHHHHHHHHc-cCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          211 TTVVVEEKMSALEG----A---ESTVIMASGM-SASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       211 ~~~~Lee~LA~l~g----~---e~~l~~sSGs-~Ai~~al~all-~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ....|++.++++++    .   .+.|++++|+ +++..++.+++ ++||+|++++|.|+.....+    +..|.++..++
T Consensus       116 G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~----~~~g~~~v~v~  191 (481)
T PTZ00377        116 GYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAI----TLLGGKQVPYY  191 (481)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHH----HHcCCEEEEEE
Confidence            35567777777653    2   3456666666 99999999998 79999999999999865433    34566555543


Q ss_pred             -------CCCHHHHHHhhcCC-----CceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----
Q 012296          282 -------PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----  341 (466)
Q Consensus       282 -------~~Dle~Le~ai~~~-----~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----  341 (466)
                             ..|+++|++++++.     ++|+|++.+|+||||.+++   +++|+++|+++|+++|+||+|....+.     
T Consensus       192 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~  271 (481)
T PTZ00377        192 LDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPF  271 (481)
T ss_pred             eccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCc
Confidence                   13689999988641     4899999999999999997   788999999999999999998653221     


Q ss_pred             ccc-----ccC-------CcEEEECCcccc-CccccceeEEEEe---CHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH-
Q 012296          342 KAL-----SLG-------ADLVLHSATKFI-GGHNDVLAGSISG---SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-  404 (466)
Q Consensus       342 ~~l-----~~g-------aDivv~S~sK~l-gg~gdv~gG~ivg---~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~-  404 (466)
                      ..+     .+.       .-++++|+||.+ +.+|+ +.||+++   ++++++++.+.+... .+.+.....++...++ 
T Consensus       272 ~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~Gl-RiG~~~~~~~p~~li~~l~~~~~~~-~~~~~~~Q~a~~~~l~~  349 (481)
T PTZ00377        272 ISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGR-RGGYFELTNIPPEVREQIYKLASIN-LCSNVVGQLMTGLMCNP  349 (481)
T ss_pred             ccHHHHHHhhcccccCCeEEEEEecCCcccccCCcC-ceEEEEEeCCCHHHHHHHHHHhhee-cCCChHHHHHHHHHhCC
Confidence            010     111       237889999974 66664 5788875   889999888766432 2233333333322221 


Q ss_pred             ---------HHHHHH----HHHHHHHHHHHHHHHcCCCeE
Q 012296          405 ---------TLHLRV----QQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       405 ---------tl~~R~----~~~~~na~~La~~L~~~p~V~  431 (466)
                               .....+    +...++++.+.+.|++++++.
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~  389 (481)
T PTZ00377        350 PREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVS  389 (481)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence                     121222    235677888999999887654

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.82  E-value=1.3e-18  Score=181.42  Aligned_cols=212  Identities=20%  Similarity=0.225  Sum_probs=158.6

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc--CCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCH
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM  285 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~--~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dl  285 (466)
                      .++...+|+++||+++|.++++++++|++|+..++..++.  +++.|+.....|.+....    +...+.++..++..|+
T Consensus        89 ~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~----~~~~~~~~~~~~~~d~  164 (407)
T PRK09064         89 TNHYHVELERELADLHGKEAALVFTSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEG----IRRSRCEKHIFRHNDV  164 (407)
T ss_pred             CHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHH----HHHcCCcEEEECCCCH
Confidence            4688999999999999988899999999998888877654  677776665555554322    2334666666677788


Q ss_pred             HHHHHhhcC---CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-------c--ccccCCcEEEE
Q 012296          286 EGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------K--ALSLGADLVLH  353 (466)
Q Consensus       286 e~Le~ai~~---~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~-------~--~l~~gaDivv~  353 (466)
                      +++++.++.   .++++|++++|+|++|.+.|+++|.++|+++|++||+||+|+.+...       .  ......|+++.
T Consensus       165 ~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~  244 (407)
T PRK09064        165 AHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEG  244 (407)
T ss_pred             HHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEE
Confidence            888888752   24899999999999999999999999999999999999998643211       0  11123589999


Q ss_pred             CCccccCccccceeEEEEeCHHHHHHHHHHHHH--hCCCchHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHcC
Q 012296          354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKTLH---LRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       354 S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~--~G~~lsp~~a~l~l~~L~tl~---~R~~~~~~na~~La~~L~~~  427 (466)
                      |++|.||..    ||++++++++++.++.....  +....++..+..++..++.+.   ...++..++++.+.+.|++.
T Consensus       245 t~sKa~g~~----GG~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  319 (407)
T PRK09064        245 TLAKAFGVM----GGYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA  319 (407)
T ss_pred             ecchhhhcc----CceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            999999875    48999999998887765432  233455655555555555543   33566778889999999875

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.82  E-value=1.1e-18  Score=186.03  Aligned_cols=210  Identities=16%  Similarity=0.223  Sum_probs=146.2

Q ss_pred             HHHHHHHHHhhhC--------C-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          212 TVVVEEKMSALEG--------A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       212 ~~~Lee~LA~l~g--------~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ...|++.||++++        . .+.|++++|+ +++..++.+++.+||.|++++|.|+.....+.   ...|+++..++
T Consensus        88 ~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~---~~~g~~~v~v~  164 (468)
T PLN02450         88 LPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLK---WRTGVEIVPIH  164 (468)
T ss_pred             hHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHh---hcCCcEEEEEe
Confidence            4468888888763        1 3457777777 89999999999999999999999988654332   13567766654


Q ss_pred             C-------CCHHHHHHhhcC-----CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----
Q 012296          282 P-------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----  341 (466)
Q Consensus       282 ~-------~Dle~Le~ai~~-----~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----  341 (466)
                      .       .|++++++++++     .++++|++++|+||||.+++   +++|.++|+++|++||+||+|+...+.     
T Consensus       165 ~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~  244 (468)
T PLN02450        165 CSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFV  244 (468)
T ss_pred             cCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcc
Confidence            2       156888887753     24899999999999999997   567888899999999999998743211     


Q ss_pred             ccc------------ccCCcEEEECCccccCccccceeEEEEeCHH-HHHHHHHHHHHhCCCchHHHHHHHHHhhH----
Q 012296          342 KAL------------SLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIRGMK----  404 (466)
Q Consensus       342 ~~l------------~~gaDivv~S~sK~lgg~gdv~gG~ivg~~e-li~~l~~~~~~~G~~lsp~~a~l~l~~L~----  404 (466)
                      ..+            ....-+++.|+||.++.+|. +.|+++++++ +++.+.+.. .++. .+.....++...|+    
T Consensus       245 s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~Gl-RiG~li~~~~~l~~~~~~~~-~~~~-~s~~~Q~a~~~~L~~~~~  321 (468)
T PLN02450        245 SVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGF-RVGAIYSNDEMVVSAATKMS-SFGL-VSSQTQYLLSALLSDKKF  321 (468)
T ss_pred             cHHHHhhhcccccCCCCCcEEEEEeccccCCCCCc-cEEEEEECCHHHHHHHHHHh-hcCC-CCHHHHHHHHHHhCCchh
Confidence            111            12235889999999998874 5789888754 556555543 2332 23333333332221    


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHcC
Q 012296          405 ---TLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       405 ---tl~~R~~~~~~na~~La~~L~~~  427 (466)
                         .+....++..++++.+.+.|+++
T Consensus       322 ~~~~l~~~~~~l~~rr~~l~~~L~~~  347 (468)
T PLN02450        322 TKNYLEENQKRLKQRQKKLVSGLEAA  347 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence               24445666778888899999876

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.82  E-value=1.1e-18  Score=179.35  Aligned_cols=216  Identities=15%  Similarity=0.108  Sum_probs=151.9

Q ss_pred             cCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      .+|+.+....|++.||++++. .+.|++++|+ +++..++.++. +||.|++++|+|......    ++..|.++..++.
T Consensus        52 ~~Y~~~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l~-~g~~vlv~~P~y~~~~~~----~~~~g~~~~~v~~  126 (360)
T PRK07392         52 RHYPDPDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGRELA-QLRAVYLITPAFGDYRRA----LRAFGATVKELPL  126 (360)
T ss_pred             hcCCCcCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhC-CCCeEEEECCCcHHHHHH----HHHcCCeEEEEec
Confidence            344555567899999999976 3556677776 89988887754 689999999999886533    4446776666542


Q ss_pred             C----------CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc----cc---cc
Q 012296          283 A----------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ----KA---LS  345 (466)
Q Consensus       283 ~----------Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~----~~---l~  345 (466)
                      .          +++++++.. + +++++++++|+||||.+++.++|.++++++++ +|+||+|......    ..   +.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~  203 (360)
T PRK07392        127 PLDQPSPGLTLRLQTLPPQL-T-PNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLA  203 (360)
T ss_pred             ccccCCcccccCHHHHHHhc-c-CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhh
Confidence            1          355555443 2 37999999999999999999999999999985 6679998654221    11   11


Q ss_pred             -cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH---HHHHHHHHHHHHHHHHH
Q 012296          346 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMA  421 (466)
Q Consensus       346 -~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~---tl~~R~~~~~~na~~La  421 (466)
                       ...-+++.|+||.|+.+| ++.||+++++++++++...+..  ...+....+++...++   ......+...++++.+.
T Consensus       204 ~~~~vi~i~S~SK~~~l~G-lRiG~~v~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~  280 (360)
T PRK07392        204 EYPNLIILRSLTKFYSLPG-LRLGYAIAHPDRLQRWQQWRDP--WPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALF  280 (360)
T ss_pred             cCCCEEEEEechhhhcCCc-hheeeeeCCHHHHHHHHhhCCC--CCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence             123588999999999777 4589999999998888765432  3344544444443333   22223345667788899


Q ss_pred             HHHHcCCCeE
Q 012296          422 KILEAHPKVK  431 (466)
Q Consensus       422 ~~L~~~p~V~  431 (466)
                      +.|++++++.
T Consensus       281 ~~L~~~~~~~  290 (360)
T PRK07392        281 QGLASLPGLT  290 (360)
T ss_pred             HHHHhCCCcE
Confidence            9998877654

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.82  E-value=3.5e-18  Score=175.36  Aligned_cols=206  Identities=21%  Similarity=0.264  Sum_probs=151.1

Q ss_pred             CchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcC---CCCcchHHHHHhhcccCCceEEEeCC
Q 012296          208 GNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTT---DCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~---~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ..+..++||+.+|+++|.  ++++++++|.+|+..++.+++++||+|+++.   +.|....    ..++..|.++.  ..
T Consensus        52 ~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~----~~~~l~ga~~~--~~  125 (346)
T TIGR03576        52 PAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPGRKVVHYLPEKPAHPSIP----RSCKLAGAEYF--ES  125 (346)
T ss_pred             CHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHH----HHHHHcCCEEe--cc
Confidence            347789999999999998  7888888999999999999999999999753   5665533    23344566643  33


Q ss_pred             CCHHHHHHhhcCCCceEEEEeCCCCCCccc---ccHHHHHHHHHhcCCEEEEeCCCCCCCc----c-cccccCCcEEEEC
Q 012296          283 ADMEGLEAALNNNNVSLFFTESPTNPFLRC---VDVKLVSDLCHKKGAIVCIDGTFATPLN----Q-KALSLGADLVLHS  354 (466)
Q Consensus       283 ~Dle~Le~ai~~~~tklV~lesP~NPtG~v---~dl~~Ia~la~~~gillIvDea~a~~~~----~-~~l~~gaDivv~S  354 (466)
                      .++++++. . + ++++|+++ ++|++|.+   .++++|+++|+++|++|++||+|+.+..    . .....+.|+++.|
T Consensus       126 ~~l~~l~~-~-~-~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s  201 (346)
T TIGR03576       126 DELSELKK-I-D-GTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTS  201 (346)
T ss_pred             CCHHHHhh-C-c-CceEEEEE-CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEec
Confidence            45666543 2 3 37888884 56899998   5799999999999999999999886532    1 1134467999999


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHc
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl--~~R~~~~~~na~~La~~L~~  426 (466)
                      +||+++|.   ++|++++++++++.++.....++.+.++..++.++..|+.+  ..+.+...++.+.+.+.|++
T Consensus       202 ~SKalaG~---r~G~v~~~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~  272 (346)
T TIGR03576       202 TDKLMDGP---RGGLLAGRKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDK  272 (346)
T ss_pred             cchhcccc---ceEEEEeCHHHHHHHHHhhcCcccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh
Confidence            99987665   58999999999999998877666545555666666666543  22334455555556666654

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.82  E-value=3.6e-18  Score=171.80  Aligned_cols=218  Identities=17%  Similarity=0.213  Sum_probs=156.3

Q ss_pred             CCchhHHHHHHHHHhhhCC--------CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEE
Q 012296          207 YGNPTTVVVEEKMSALEGA--------ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~--------e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~  278 (466)
                      ...+...++++.++++++.        ++.+++++|++++..++.++.++||+|+++++.|.+....+    +..|.++.
T Consensus        33 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~----~~~~~~~~  108 (350)
T cd00609          33 YPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAA----RLAGAEVV  108 (350)
T ss_pred             CCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHH----HHCCCEEE
Confidence            3445566677777776543        35666677779999999999999999999999999866443    44567776


Q ss_pred             EeCCC-----CH--HHHHHhhcCCCceEEEEeCCCCCCcccccHHHH---HHHHHhcCCEEEEeCCCCCCCc--------
Q 012296          279 VIDPA-----DM--EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLV---SDLCHKKGAIVCIDGTFATPLN--------  340 (466)
Q Consensus       279 ~vd~~-----Dl--e~Le~ai~~~~tklV~lesP~NPtG~v~dl~~I---a~la~~~gillIvDea~a~~~~--------  340 (466)
                      .++..     +.  +.++..+++ ++++|++++|+||+|.+.|++++   .++|+++|+++|+|++++.+..        
T Consensus       109 ~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~  187 (350)
T cd00609         109 PVPLDEEGGFLLDLELLEAAKTP-KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPAL  187 (350)
T ss_pred             EEecccccCCccCHHHHHhhcCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccc
Confidence            66533     22  556666655 49999999999999999986554   5899999999999999765322        


Q ss_pred             ccccccCCcEEEECCccccCccccceeEEEEeCH-HHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHH
Q 012296          341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNS  415 (466)
Q Consensus       341 ~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~-eli~~l~~~~~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~  415 (466)
                      ......+.|+++.|++|+++.+| ..+|++++++ ++++.++..........+...+..+...+    +.+....+++.+
T Consensus       188 ~~~~~~~~~~~~~s~~K~~~~~g-~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  266 (350)
T cd00609         188 ALLDAYERVIVLRSFSKTFGLPG-LRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRR  266 (350)
T ss_pred             cCcCccCcEEEEeecccccCCcc-cceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            12334567999999999998443 3579999988 78888887666543444444333333333    334555566788


Q ss_pred             HHHHHHHHHHcCCCe
Q 012296          416 TALRMAKILEAHPKV  430 (466)
Q Consensus       416 na~~La~~L~~~p~V  430 (466)
                      +++.+.+.|++++..
T Consensus       267 ~~~~l~~~L~~~~~~  281 (350)
T cd00609         267 RRDALLEALKELGPL  281 (350)
T ss_pred             HHHHHHHHHHhcCCc
Confidence            899999999987654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.82  E-value=1.8e-18  Score=176.48  Aligned_cols=210  Identities=16%  Similarity=0.170  Sum_probs=149.8

Q ss_pred             ccCCCchhHHHHHHHHHhhhC---C-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEE
Q 012296          204 YGRYGNPTTVVVEEKMSALEG---A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g---~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~  278 (466)
                      +++|+.+...+|++.++++++   . ++.+++++|+ +++..++.++    |.|++.+|+|.....    .++..|+++.
T Consensus        50 ~~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~----d~v~v~~P~y~~~~~----~~~~~g~~~~  121 (335)
T PRK14808         50 LRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF----DRSVFFPPTYSCYRI----FAKAVGAKFL  121 (335)
T ss_pred             hhcCCCCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh----CcEEECCCCHHHHHH----HHHHcCCeEE
Confidence            455666678899999999987   3 4567777777 8998888776    789999999987553    3445678877


Q ss_pred             EeCCCC---HHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc---cc-ccCCcEE
Q 012296          279 VIDPAD---MEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---AL-SLGADLV  351 (466)
Q Consensus       279 ~vd~~D---le~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~---~l-~~gaDiv  351 (466)
                      .++..+   ++..  .+.  ++++|++++|+||||.+++.+++.+++ +++++||+||+|.......   .. ....-++
T Consensus       122 ~v~~~~~~~~~~~--~~~--~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~  196 (335)
T PRK14808        122 EVPLTKDLRIPEV--NVG--EGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAV  196 (335)
T ss_pred             EecCCCcCCCChh--Hcc--CCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEE
Confidence            775431   1111  232  368999999999999999999999998 5799999999986532111   11 1224588


Q ss_pred             EECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL-NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       352 v~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~l-sp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      +.|+||.++.+| .+.||+++++++++++...+..++... ....+..++...+.+..++++..++++.+.+.|+++
T Consensus       197 ~~S~SK~~~l~G-lRvG~~v~~~~~~~~l~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~  272 (335)
T PRK14808        197 IRTFSKAFSLAA-QRIGYVVSSEKFIDAYNRVRLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM  272 (335)
T ss_pred             EEechhhccCcc-cceEEEEeCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            999999999777 457999999999999877664333321 222233333333455556667777788888999876

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.81  E-value=3.1e-18  Score=175.90  Aligned_cols=215  Identities=14%  Similarity=0.204  Sum_probs=152.4

Q ss_pred             cCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      .+|+++...+|++.++++++. .+.+++++|+ +++..++.++ .+ +.|++++|+|+.....    +...|.++..++.
T Consensus        49 ~~Y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~-~~-~~v~i~~P~y~~~~~~----~~~~g~~~~~~~~  122 (354)
T PRK06358         49 VEYPDPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKVT-KP-KKVLILAPTFAEYERA----LKAFDAEIEYAEL  122 (354)
T ss_pred             hcCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh-CC-CcEEEecCChHHHHHH----HHHcCCeeEEEeC
Confidence            445666678999999999987 4567777777 8888888775 44 6899999999875433    3455766666532


Q ss_pred             -------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----cc----
Q 012296          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----AL----  344 (466)
Q Consensus       283 -------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----~l----  344 (466)
                             .| +++.+.+.++ +++|++++|+||||.+++   +++|.++|+++|+++|+|++|.......    .+    
T Consensus       123 ~~~~~~~~d-~~~~~~~~~~-~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~  200 (354)
T PRK06358        123 TEETNFAAN-EIVLEEIKEE-IDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLE  200 (354)
T ss_pred             ccccCCCcc-HHHHHhhccC-CCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhcc
Confidence                   24 4555556553 899999999999999996   6778888999999999999986543211    11    


Q ss_pred             ccCCcEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHH
Q 012296          345 SLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRM  420 (466)
Q Consensus       345 ~~gaDivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~L  420 (466)
                      ....-+++.|+||.++.+| ++.||+++ ++++++.++.....+  ..+....+++...+   +.+...++...++++.+
T Consensus       201 ~~~~vi~~~S~SK~~gl~G-~RiG~lv~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l  277 (354)
T PRK06358        201 NFKNLIIIRAFTKFFAIPG-LRLGYGLTSNKNLAEKLLQMREPW--SINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFL  277 (354)
T ss_pred             CCCCEEEEEechhhccCcc-hhheeeecCCHHHHHHHHHhCCCC--cchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            1124488999999999887 45788887 567888887765432  33443333333333   33455566778888999


Q ss_pred             HHHHHcCCCe
Q 012296          421 AKILEAHPKV  430 (466)
Q Consensus       421 a~~L~~~p~V  430 (466)
                      .+.|++++++
T Consensus       278 ~~~L~~~~~~  287 (354)
T PRK06358        278 YNGLSEFKGI  287 (354)
T ss_pred             HHHHhcCCCc
Confidence            9999887664

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.81  E-value=5.5e-18  Score=176.50  Aligned_cols=216  Identities=19%  Similarity=0.220  Sum_probs=159.4

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc---------CC-CEEEEcCCCCcchHHHHHhh-------
Q 012296          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP---------AG-GHIVTTTDCYRKTRIFIETV-------  269 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~---------~G-d~Vlv~~~~y~~t~~~~~~~-------  269 (466)
                      ..++...+|+++|+++.+.+.+++++||++|+..++..+..         +| ++|++....|++........       
T Consensus        80 ~~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~  159 (401)
T PRK00854         80 FRNDQLAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDAR  159 (401)
T ss_pred             cCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCcccc
Confidence            45688899999999999988999999999999999987743         23 67888887777743222110       


Q ss_pred             --cccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCccc-
Q 012296          270 --LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLNQK-  342 (466)
Q Consensus       270 --l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~~~~-  342 (466)
                        +......+..++..|+++|++++.++ +++|++|+|+||+|.+.+    +++|.++|++||+++|+||++.. +... 
T Consensus       160 ~~~~~~~~~~~~~~~~d~~~le~~i~~~-~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g-~g~~g  237 (401)
T PRK00854        160 GGFGPFTPGFRVVPFGDAEALEAAITPN-TVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTG-LGRTG  237 (401)
T ss_pred             ccCCCCCCCeEEeCCCCHHHHHHHhCCC-eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhC-CCCCc
Confidence              11122345667778999999999874 999999999999999986    99999999999999999999863 2221 


Q ss_pred             ------ccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHH--HHHHHH
Q 012296          343 ------ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQN  414 (466)
Q Consensus       343 ------~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~~--R~~~~~  414 (466)
                            ......|+++.  +|+++++. ..+|++++++++++.++..........++..+++++..|+.+..  ..++..
T Consensus       238 ~~~~~~~~g~~~D~~~~--~K~l~gg~-~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~  314 (401)
T PRK00854        238 KLLAEEHEGIEADVTLI--GKALSGGF-YPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAA  314 (401)
T ss_pred             hHhHHhhcCCCCCEEEe--cccccCCc-cCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence                  12234688875  59998754 34789999999888775322211122467777777777777654  456667


Q ss_pred             HHHHHHHHHHHcC
Q 012296          415 STALRMAKILEAH  427 (466)
Q Consensus       415 ~na~~La~~L~~~  427 (466)
                      ++.+.+.+.|++.
T Consensus       315 ~~~~~l~~~L~~~  327 (401)
T PRK00854        315 EMGAYFLEGLRSI  327 (401)
T ss_pred             HHHHHHHHHHHhh
Confidence            7778888888765

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.81  E-value=2.9e-18  Score=177.03  Aligned_cols=215  Identities=19%  Similarity=0.201  Sum_probs=151.7

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc---cCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC--
Q 012296          210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all---~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--  282 (466)
                      ...+++++.+++++|++  +.+++++|++++.+++.+++   ++||+|+++..+|++....+. .+...|++++.++.  
T Consensus        42 ~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~-~~~~~G~~v~~v~~~~  120 (379)
T TIGR03402        42 KAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQ-HLEKQGYKVTYLPVDE  120 (379)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHH-HHHHcCCEEEEEccCC
Confidence            45678889999999973  45566677799998888764   457899999999988655543 34557888888753  


Q ss_pred             ---CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEECCccc
Q 012296          283 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKF  358 (466)
Q Consensus       283 ---~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S~sK~  358 (466)
                         .|+++++++++++ ++++++++++||+|.+.|+++|.++|+++|+++++|++++.+. ..+...+++|+++.|.+|+
T Consensus       121 ~g~~~~~~l~~~i~~~-~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~  199 (379)
T TIGR03402       121 EGRLDLEELRAAITDD-TALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKL  199 (379)
T ss_pred             CCcCCHHHHHHhcCCC-cEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHc
Confidence               4789999999875 8999999999999999999999999999999999999987653 2344557899999999996


Q ss_pred             cCccccceeEEEEeCHHHHHHHHHHH-------HHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHc-
Q 012296          359 IGGHNDVLAGSISGSGKLVTQIRNLH-------HVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRMAKILEA-  426 (466)
Q Consensus       359 lgg~gdv~gG~ivg~~eli~~l~~~~-------~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~na~~La~~L~~-  426 (466)
                      ++++|   .|+++.+++..  +....       ....++.+....+.+..++    +.++...++..++++.+.+.|++ 
T Consensus       200 ~gp~G---~g~l~v~~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~  274 (379)
T TIGR03402       200 HGPKG---VGALYIRKGTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLAR  274 (379)
T ss_pred             CCCCc---eEEEEECCCCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence            66554   57777665431  11000       0011222222222222222    23334445566777788888875 


Q ss_pred             CCCeE
Q 012296          427 HPKVK  431 (466)
Q Consensus       427 ~p~V~  431 (466)
                      .|++.
T Consensus       275 ~~~~~  279 (379)
T TIGR03402       275 IPDAR  279 (379)
T ss_pred             CCCEE
Confidence            77664

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.81  E-value=1.7e-18  Score=177.60  Aligned_cols=211  Identities=12%  Similarity=0.117  Sum_probs=146.4

Q ss_pred             CCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC--
Q 012296          207 YGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--  282 (466)
                      |+++....|++.++++++. .+.+++++|+ +++..++.+++++||.|++++|+|......    ....|..+..++.  
T Consensus        62 Y~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~~~~gd~V~v~~P~y~~~~~~----~~~~g~~~~~~~l~~  137 (357)
T PRK14809         62 YPKASHADLTAALADRWDVSPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMS----ARYHHGEVREYPVSK  137 (357)
T ss_pred             CCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHH----HHHcCCeEEEEeccc
Confidence            3445567899999999986 4567777776 899999999999999999999999753322    2334555544421  


Q ss_pred             -----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhc--CCEEEEeCCCCCCCcccc----cc-cCCcE
Q 012296          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLNQKA----LS-LGADL  350 (466)
Q Consensus       283 -----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~--gillIvDea~a~~~~~~~----l~-~gaDi  350 (466)
                           .+.+++++.+.  ++++|++++|+||||.+++.+++.++++..  ++++|+||+|........    .. ....+
T Consensus       138 ~~~~~~~~~~~~~~~~--~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi  215 (357)
T PRK14809        138 ADDFEQTADTVLDAYD--GERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVA  215 (357)
T ss_pred             CcCCCcCHHHHHHhhc--CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEE
Confidence                 14566665553  379999999999999999988777777653  789999999875332111    11 22358


Q ss_pred             EEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHc
Q 012296          351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       351 vv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~L~~  426 (466)
                      ++.|+||.++.+| ++.||+++++++++++.+....++  .+.....+++..+   +.++...+...++.+.+.+.|+.
T Consensus       216 ~~~SfSK~~~~~G-lRiG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~  291 (357)
T PRK14809        216 VLRTFSKAYGLAG-LRLGYAVVPEEWADAYARVNTPFA--ASELACRAGLAALDDDEHVERTVETARWAREYIREELDA  291 (357)
T ss_pred             EEecchhHhcCcc-hhheeeecCHHHHHHHHHhCCCCC--CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8899999999877 458999999999998887654332  3444444433333   33444455556666777777754

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.81  E-value=6.2e-18  Score=176.48  Aligned_cols=211  Identities=15%  Similarity=0.147  Sum_probs=144.7

Q ss_pred             HHHHHHHHHhhh----CC---Cc-EEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          212 TVVVEEKMSALE----GA---ES-TVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~---e~-~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ...|++.+|+++    |.   .+ .+++++|+ +++..++.+++.+||.|++++|+|+.....    +...|.++..++.
T Consensus        73 ~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~  148 (403)
T PRK08636         73 IYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQA----FILAGGNVHKMPL  148 (403)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHH----HHhcCCEEEEEec
Confidence            345666666654    53   23 57777776 999999999999999999999999986533    3445666655432


Q ss_pred             -------CCHH----HHHHhhcC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----c
Q 012296          283 -------ADME----GLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----K  342 (466)
Q Consensus       283 -------~Dle----~Le~ai~~--~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~  342 (466)
                             .|++    .++++++.  .++++|++++|+||||.+++   +++|+++|++|++++|+|++|......    .
T Consensus       149 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~  228 (403)
T PRK08636        149 EYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTP  228 (403)
T ss_pred             cccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCC
Confidence                   3444    45666642  24899999999999999997   567888899999999999998753221    1


Q ss_pred             c-ccc----CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCc-hH--HHHHHHHHh-hHHHHHHHHHH
Q 012296          343 A-LSL----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL-NP--NAAYLIIRG-MKTLHLRVQQQ  413 (466)
Q Consensus       343 ~-l~~----gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~l-sp--~~a~l~l~~-L~tl~~R~~~~  413 (466)
                      + ..+    ...+++.|+||.++.+| .+.||+++++++++.+.+.....+... .+  ..+..++.+ .+.+....+..
T Consensus       229 ~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~  307 (403)
T PRK08636        229 SILEVEGAKDVAVESYTLSKSYNMAG-WRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDGDQSCVEEIRETY  307 (403)
T ss_pred             ChhcCCCccccEEEEEecccccCCcc-ceeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            1 111    12355789999998887 468999999999998887665432221 22  222222322 23344445556


Q ss_pred             HHHHHHHHHHHHcC
Q 012296          414 NSTALRMAKILEAH  427 (466)
Q Consensus       414 ~~na~~La~~L~~~  427 (466)
                      .++++.+.+.|+++
T Consensus       308 ~~~~~~l~~~L~~~  321 (403)
T PRK08636        308 RKRRDVLIESFANA  321 (403)
T ss_pred             HHHHHHHHHHHHHC
Confidence            77788888888875

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.81  E-value=1e-18  Score=182.35  Aligned_cols=218  Identities=16%  Similarity=0.220  Sum_probs=154.7

Q ss_pred             chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc----cCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          209 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all----~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ....+++++.+++++|.+  +.+++++|++++..++.++.    ++||+|+++.+.|++....+. .++..|+++++++.
T Consensus        46 ~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~-~~~~~g~~v~~v~~  124 (402)
T TIGR02006        46 EEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCR-YLEREGFEVTYLPP  124 (402)
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHH-HHHhcCCEEEEEcc
Confidence            456788899999999974  45555566689888877653    689999999999998765553 34556888888753


Q ss_pred             -----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECCc
Q 012296          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSAT  356 (466)
Q Consensus       283 -----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~s  356 (466)
                           .|+++++++++++ +++|++++++||+|.+.|+++|.++|+++|+++++|++++.+.. .+...+++|+++.|++
T Consensus       125 ~~~~~~d~~~l~~~l~~~-~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~  203 (402)
T TIGR02006       125 KSNGLIDLEELKAAIRDD-TILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGH  203 (402)
T ss_pred             CCCCcCCHHHHHHhcCCC-CEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehh
Confidence                 3799999999875 89999999999999999999999999999999999999876533 3444678999999999


Q ss_pred             cccCccccceeEEEEeCHHHHHHHHHHH-------HHhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHH
Q 012296          357 KFIGGHNDVLAGSISGSGKLVTQIRNLH-------HVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAKILE  425 (466)
Q Consensus       357 K~lgg~gdv~gG~ivg~~eli~~l~~~~-------~~~G~~lsp~~a~l~l~~L~----tl~~R~~~~~~na~~La~~L~  425 (466)
                      |+++++|   .|+++.+++...++....       ....++.+......+...++    .++.+.++..+.++.+.+.|+
T Consensus       204 K~~gp~G---~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~  280 (402)
T TIGR02006       204 KIYGPKG---IGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIK  280 (402)
T ss_pred             hhcCCCc---eEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            9887655   455555543332222110       01112222222211112232    234445566777888888888


Q ss_pred             cCCCeE
Q 012296          426 AHPKVK  431 (466)
Q Consensus       426 ~~p~V~  431 (466)
                      +.++|.
T Consensus       281 ~~~~v~  286 (402)
T TIGR02006       281 SIEEVY  286 (402)
T ss_pred             cCCCEE
Confidence            888764

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.81  E-value=3e-18  Score=179.05  Aligned_cols=170  Identities=15%  Similarity=0.174  Sum_probs=138.9

Q ss_pred             chhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC---
Q 012296          209 NPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e---~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---  282 (466)
                      ....+++++.+++++|.+   ..++.++|+.++..++..++++||+|++.++.|.+..  +...++..|++++.++.   
T Consensus        41 ~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~--~~~~~~~~g~~v~~v~~~~~  118 (401)
T PLN02409         41 PALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLL--WIDQMQRLNFDVDVVESPWG  118 (401)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHH--HHHHHHHcCCceEEEECCCC
Confidence            356778899999999873   2566677789999999999999999999998887643  23456677888877753   


Q ss_pred             --CCHHHHHHhhcC---CCceEEEEeCCCCCCcccccHHHHHHH--HHhcCCEEEEeCCCCCCC-cccccccCCcEEEEC
Q 012296          283 --ADMEGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDL--CHKKGAIVCIDGTFATPL-NQKALSLGADLVLHS  354 (466)
Q Consensus       283 --~Dle~Le~ai~~---~~tklV~lesP~NPtG~v~dl~~Ia~l--a~~~gillIvDea~a~~~-~~~~l~~gaDivv~S  354 (466)
                        .|+++|++++++   +++++|++.+++||||.+.|+++|.++  |+++|+++|+|++++.+. ..+..++|+|+++.|
T Consensus       119 ~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s  198 (401)
T PLN02409        119 QGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTG  198 (401)
T ss_pred             CCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEc
Confidence              368999999985   248999999999999999999999999  999999999999987543 344456789999999


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHH
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRN  382 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~  382 (466)
                      .+|+++++.  ..|+++.++++++++..
T Consensus       199 ~~K~l~~P~--G~G~l~~~~~~~~~~~~  224 (401)
T PLN02409        199 SQKALSLPT--GLGIVCASPKALEASKT  224 (401)
T ss_pred             CccccCcCC--CcceeEECHHHHHHHhc
Confidence            999998865  37999999988877653

>PRK14012 cysteine desulfurase; Provisional

Probab=99.80  E-value=2.4e-18  Score=179.56  Aligned_cols=218  Identities=18%  Similarity=0.249  Sum_probs=153.0

Q ss_pred             chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc----cCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          209 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all----~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      .+..+++|+.+++++|.+  +++++++|++++.+++.++.    ++||+|++++.+|+++...+. .+...|+++.+++.
T Consensus        48 ~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~-~~~~~g~~~~~v~~  126 (404)
T PRK14012         48 EEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCR-QLEREGFEVTYLDP  126 (404)
T ss_pred             HHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHH-HHHhCCCEEEEEcc
Confidence            356788999999999984  36667777799988887663    789999999999988765543 34456888887753


Q ss_pred             -----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECCc
Q 012296          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSAT  356 (466)
Q Consensus       283 -----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~s  356 (466)
                           .|+++|+++|+++ +++|++++++||||.+.|+++|.++|+++|+++|+|++++.+.. .+....++|+++.|++
T Consensus       127 ~~~g~~d~~~l~~~i~~~-t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~  205 (404)
T PRK14012        127 QSNGIIDLEKLEAAMRDD-TILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAH  205 (404)
T ss_pred             CCCCcCCHHHHHHhcCCC-CEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehh
Confidence                 3799999999875 99999999999999999999999999999999999999876543 3444568999999999


Q ss_pred             cccCccccceeEEEEeCHHHHHHHHHHHH-------HhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHH
Q 012296          357 KFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAKILE  425 (466)
Q Consensus       357 K~lgg~gdv~gG~ivg~~eli~~l~~~~~-------~~G~~lsp~~a~l~l~~L~----tl~~R~~~~~~na~~La~~L~  425 (466)
                      |.++++|   .|+++.+++...++.....       ...++.+......+-..++    .+..+.+++.+.++.+.+.|+
T Consensus       206 K~~gp~g---~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~  282 (404)
T PRK14012        206 KIYGPKG---IGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIK  282 (404)
T ss_pred             hccCCCc---eEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            9886554   3444444432222211000       0011111111111111111    233455667778888888888


Q ss_pred             cCCCeE
Q 012296          426 AHPKVK  431 (466)
Q Consensus       426 ~~p~V~  431 (466)
                      +++.+.
T Consensus       283 ~~~~i~  288 (404)
T PRK14012        283 DIEEVY  288 (404)
T ss_pred             cCCCEE
Confidence            887764

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.80  E-value=1e-17  Score=176.99  Aligned_cols=209  Identities=18%  Similarity=0.197  Sum_probs=164.1

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH---------ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEE
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL---------VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al---------l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~  279 (466)
                      .+...+||+.+|+++|.+.+++++||++|+.+++.++         +++||+||++.++|.++...+    ...|.++.+
T Consensus        62 G~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v----~~~G~~pv~  137 (438)
T PRK15407         62 GRFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPI----IQNGLVPVF  137 (438)
T ss_pred             ChhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHH----HHcCCEEEE
Confidence            4678899999999999999999999999999988876         478999999999999876444    345777777


Q ss_pred             eCC------CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccc---cccCCcE
Q 012296          280 IDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA---LSLGADL  350 (466)
Q Consensus       280 vd~------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~---l~~gaDi  350 (466)
                      +|.      .|+++++++++++ +++|+++++   .|...|+++|.++|+++|++||+|++++.+...+.   ..+| |+
T Consensus       138 vdvd~~~~~id~~~le~~i~~~-tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~g-d~  212 (438)
T PRK15407        138 VDVELPTYNIDASLLEAAVSPK-TKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFG-DI  212 (438)
T ss_pred             EecCCCcCCcCHHHHHHHcCcC-CeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccC-ce
Confidence            653      2789999999875 999998654   57888999999999999999999999876543332   2333 89


Q ss_pred             EEECCc--cccCccccceeEEEEeCH-HHHHHHHHHHHH-------------------------------------hC--
Q 012296          351 VLHSAT--KFIGGHNDVLAGSISGSG-KLVTQIRNLHHV-------------------------------------LG--  388 (466)
Q Consensus       351 vv~S~s--K~lgg~gdv~gG~ivg~~-eli~~l~~~~~~-------------------------------------~G--  388 (466)
                      .++|++  |.+...   -||+++.++ ++.++++.++..                                     .|  
T Consensus       213 ~~fSf~~~k~~~~g---eGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n  289 (438)
T PRK15407        213 ATLSFYPAHHITMG---EGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYN  289 (438)
T ss_pred             EEEeCCCCCCcccc---CceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccc
Confidence            999885  656543   268888765 555555543320                                     12  


Q ss_pred             CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012296          389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK  429 (466)
Q Consensus       389 ~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~  429 (466)
                      ..++.+.|.+++..|+.++.++++.+++++.+.+.|.+.+.
T Consensus       290 ~rmsel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~  330 (438)
T PRK15407        290 LKITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLED  330 (438)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            23567788888999999999999999999999999988764

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.80  E-value=5.8e-18  Score=177.11  Aligned_cols=213  Identities=20%  Similarity=0.182  Sum_probs=150.2

Q ss_pred             chhHHHHHH----HHHhhhCCCcE-EEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHh-hcccCCceEEEeC-
Q 012296          209 NPTTVVVEE----KMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVID-  281 (466)
Q Consensus       209 np~~~~Lee----~LA~l~g~e~~-l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~-~l~~~Gi~v~~vd-  281 (466)
                      ++..+.+++    .+++++|.+.. ++++||+.|+..++.+++++||+|+++.++|.+....... .+...|.++..++ 
T Consensus        66 ~~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  145 (416)
T PRK00011         66 CEYVDVVEQLAIDRAKELFGAEYANVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGV  145 (416)
T ss_pred             chHHHHHHHHHHHHHHHHhCCCceeeecCCchHHHHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCc
Confidence            445566655    88999998655 6668999999999999999999999999999764321111 1223355555543 


Q ss_pred             -----CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-----ccccccCCcEE
Q 012296          282 -----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLV  351 (466)
Q Consensus       282 -----~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-----~~~l~~gaDiv  351 (466)
                           ..|++++++++++.++++|+++.++|  |...|+++|.++|+++|+++|+|++++.+..     ..+.. ++|++
T Consensus       146 ~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~~--~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di~  222 (416)
T PRK00011        146 DEETGLIDYDEVEKLALEHKPKLIIAGASAY--SRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADVV  222 (416)
T ss_pred             CcccCCcCHHHHHHHHHhcCCCEEEECCCcC--CCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-CCcEE
Confidence                 24799999999753589999865544  5667999999999999999999999654321     22334 68999


Q ss_pred             EECCccccCccccceeEEEEeC-HHHHHHHHHHHHHh--CCCchHHHHHH---HHHhh-HHHHHHHHHHHHHHHHHHHHH
Q 012296          352 LHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL--GGALNPNAAYL---IIRGM-KTLHLRVQQQNSTALRMAKIL  424 (466)
Q Consensus       352 v~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~--G~~lsp~~a~l---~l~~L-~tl~~R~~~~~~na~~La~~L  424 (466)
                      +.|++|+++|+   .||+++++ ++++++++......  +....+..+.+   ++..+ +.++.+++++.++++.+.+.|
T Consensus       223 ~~S~~K~l~g~---~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L  299 (416)
T PRK00011        223 TTTTHKTLRGP---RGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEAL  299 (416)
T ss_pred             EecCCcCCCCC---CceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999765   37888885 68888887654322  11122222211   11112 235677888999999999999


Q ss_pred             HcC
Q 012296          425 EAH  427 (466)
Q Consensus       425 ~~~  427 (466)
                      ++.
T Consensus       300 ~~~  302 (416)
T PRK00011        300 AER  302 (416)
T ss_pred             HhC
Confidence            875

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.80  E-value=1.5e-17  Score=172.90  Aligned_cols=214  Identities=22%  Similarity=0.236  Sum_probs=148.3

Q ss_pred             CchhHHHHH----HHHHhhhCCCcE-EEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHH-hhcccCCceEEEe-
Q 012296          208 GNPTTVVVE----EKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIE-TVLPKMGITATVI-  280 (466)
Q Consensus       208 ~np~~~~Le----e~LA~l~g~e~~-l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~-~~l~~~Gi~v~~v-  280 (466)
                      +.+....++    +.+++++|.+.. +++++|++|+..++.+++++||+|+++++.|++...... ..+...|.++..+ 
T Consensus        59 ~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  138 (402)
T cd00378          59 GCEYVDEIEDLAIERAKKLFGAEYANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVP  138 (402)
T ss_pred             CchHHHHHHHHHHHHHHHHhCCCceeeecCCcHHHHHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEec
Confidence            344444444    457788998654 555789999999999999999999999999987532211 1134456544333 


Q ss_pred             -C------CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-----ccccccCC
Q 012296          281 -D------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGA  348 (466)
Q Consensus       281 -d------~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-----~~~l~~ga  348 (466)
                       +      ..|++++++++.+.++++|++++|+||  ...|+++|.++|+++|+++|+|+++..+..     ..++. ++
T Consensus       139 ~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~--~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~~  215 (402)
T cd00378         139 YGVDPETGLIDYDALEKMALEFKPKLIVAGASAYP--RPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-GA  215 (402)
T ss_pred             CCcCcccCCcCHHHHHHHHHhCCCCEEEecCcccC--CCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-CC
Confidence             2      228999999986445899999888775  567999999999999999999999643221     22334 68


Q ss_pred             cEEEECCccccCccccceeEEEEeCH-HHHHHHHHHHHH--hCCCchHHH-H-HH-HHHhhH-HHHHHHHHHHHHHHHHH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHV--LGGALNPNA-A-YL-IIRGMK-TLHLRVQQQNSTALRMA  421 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg~~-eli~~l~~~~~~--~G~~lsp~~-a-~l-~l~~L~-tl~~R~~~~~~na~~La  421 (466)
                      |+++.|+||+++|+   .+|++++++ +++++++.....  .+....+.. + .. +...++ .+..+++++.++++.+.
T Consensus       216 dv~~~s~sK~l~G~---~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~  292 (402)
T cd00378         216 DVVTTTTHKTLRGP---RGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALA  292 (402)
T ss_pred             cEEEeccccCCCCC---CceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999665   378888776 888888664432  222111111 1 11 112222 45567788899999999


Q ss_pred             HHHHcC
Q 012296          422 KILEAH  427 (466)
Q Consensus       422 ~~L~~~  427 (466)
                      +.|+++
T Consensus       293 ~~L~~~  298 (402)
T cd00378         293 EALKER  298 (402)
T ss_pred             HHHHhC
Confidence            999886

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.80  E-value=4.8e-18  Score=177.69  Aligned_cols=213  Identities=13%  Similarity=0.141  Sum_probs=137.6

Q ss_pred             chhHHHHHHHHHhhh----C--C-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCce----
Q 012296          209 NPTTVVVEEKMSALE----G--A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT----  276 (466)
Q Consensus       209 np~~~~Lee~LA~l~----g--~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~----  276 (466)
                      .+....|++.+++++    |  . .+.|++++|+ +++.++ ..++.+||+|++++|+|......+    +..|.+    
T Consensus        75 ~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l-~~~~~~gd~V~v~~P~Y~~~~~~~----~~~g~~~~~~  149 (409)
T PRK07590         75 EQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNI-LDIFGPDNTIAVTDPVYPVYVDTN----VMAGRTGEAN  149 (409)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHH-HHhcCCCCEEEEeCCCCcchHHHH----HHcCCccccc
Confidence            344567888888764    2  2 4567777777 787765 466789999999999999866443    334443    


Q ss_pred             -------EEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----c
Q 012296          277 -------ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----K  342 (466)
Q Consensus       277 -------v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~  342 (466)
                             +..++...-+.+...+...++++|++++|+||||.+++   +++|+++|+++|++||+||+|......    .
T Consensus       150 ~~~~~~~~~~v~~~~~~~~~~d~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~  229 (409)
T PRK07590        150 EDGRYSGIVYLPCTAENNFVPELPEEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPH  229 (409)
T ss_pred             ccccccceeEeecccccCCcccCcccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCc
Confidence                   54554321111222222235899999999999999997   567888899999999999998753221    1


Q ss_pred             cc-cc----CCcEEEECCccccCccccceeEEEEeCHHHHHHH------------HHHHHHhCCCchHHHHHHHHH----
Q 012296          343 AL-SL----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI------------RNLHHVLGGALNPNAAYLIIR----  401 (466)
Q Consensus       343 ~l-~~----gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l------------~~~~~~~G~~lsp~~a~l~l~----  401 (466)
                      ++ ..    +..|++.|+||.++.+| .+.||+++++++++.+            ...........+.....++..    
T Consensus       230 ~~~~~~~~~~~vi~~~SfSK~~~~pG-lRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~  308 (409)
T PRK07590        230 SIYEIEGARECAIEFRSFSKTAGFTG-TRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSP  308 (409)
T ss_pred             chhhCCCcccceEEEecCccccCCcC-ceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcC
Confidence            11 11    12477899999998777 4689999999888632            111111111233333222222    


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          402 -GMKTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       402 -~L~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                       +.+.+....+...++++.+.+.|+++
T Consensus       309 ~~~~~~~~~~~~~~~~r~~l~~~L~~~  335 (409)
T PRK07590        309 EGKAQIKELIDYYMENAKIIREGLESA  335 (409)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             22345555666778888899999876

>PRK05839 hypothetical protein; Provisional

Probab=99.80  E-value=6.7e-18  Score=174.66  Aligned_cols=206  Identities=16%  Similarity=0.092  Sum_probs=137.9

Q ss_pred             HHHHHHHH----hhhCC---CcEEEeCCHH-HHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          213 VVVEEKMS----ALEGA---ESTVIMASGM-SASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       213 ~~Lee~LA----~l~g~---e~~l~~sSGs-~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ..|++.++    +.+|.   .+.|++++|+ +++..++..++  ++||.|+++.|+|......    +...|+++..++.
T Consensus        63 ~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~----~~~~g~~v~~v~~  138 (374)
T PRK05839         63 ESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGA----AIASRAKVLLMPL  138 (374)
T ss_pred             HHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHH----HHhcCCEEEEeec
Confidence            35555554    44452   4667777777 78888777764  5799999999999876533    3456888777653


Q ss_pred             C-----CHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----ccc------
Q 012296          283 A-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL------  344 (466)
Q Consensus       283 ~-----Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~~l------  344 (466)
                      .     +++..+..+ + ++++|++++|+||||.+++   +++|+++|+++|+++|+||+|......    ...      
T Consensus       139 ~~~~~~~~d~~~~~~-~-~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~  216 (374)
T PRK05839        139 TKENDFTPSLNEKEL-Q-EVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILV  216 (374)
T ss_pred             ccccCCcCCcchhhh-c-cccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhccc
Confidence            2     222222223 3 3899999999999999986   567778899999999999998753211    101      


Q ss_pred             ---ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHH---HhhHHHHHHHHHHHHHHH
Q 012296          345 ---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII---RGMKTLHLRVQQQNSTAL  418 (466)
Q Consensus       345 ---~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l---~~L~tl~~R~~~~~~na~  418 (466)
                         ..+.-+++.|+||.|+.+| ++.||++++++++++++......+...+......+.   ..-+.++...++..++.+
T Consensus       217 ~~~~~~~vi~~~SfSK~~~~~G-lRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  295 (374)
T PRK05839        217 GNESFKNVLVINSISKRSSAPG-LRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWLDDEHAEFFRNIYAKNLK  295 (374)
T ss_pred             CccccCcEEEEeccccccCCcc-ceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence               1134588999999998887 468999999999998887765444433333222222   222334444555666667


Q ss_pred             HHHHHHH
Q 012296          419 RMAKILE  425 (466)
Q Consensus       419 ~La~~L~  425 (466)
                      .+.+.|.
T Consensus       296 ~~~~~l~  302 (374)
T PRK05839        296 LAREILG  302 (374)
T ss_pred             HHHHhcC
Confidence            7776663

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.80  E-value=9.5e-18  Score=178.25  Aligned_cols=215  Identities=22%  Similarity=0.222  Sum_probs=154.1

Q ss_pred             cccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          203 EYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       203 ~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      .|+  +++...+||+.++++++.+.++++.+|++|+.+++.+++++|| |+++++.|..+...+    ...|.++++++.
T Consensus        73 ~Y~--~~~g~~~Lreaia~~~~~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i----~~~G~~~v~v~~  145 (460)
T PRK13238         73 AYA--GSRSYYRLEDAVKDIFGYPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHI----ELNGATAVDLVI  145 (460)
T ss_pred             ccC--CCCCHHHHHHHHHHHhCCCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHH----HHcCCEEEEEec
Confidence            455  4677889999999999999999999999999999999999999 999999887755433    235666555432


Q ss_pred             ---------------CCHHHHHHhhcC---CCceEEEEeCCCCCCc-cccc---HHHHHHHHHhcCCEEEEeCCCCC--C
Q 012296          283 ---------------ADMEGLEAALNN---NNVSLFFTESPTNPFL-RCVD---VKLVSDLCHKKGAIVCIDGTFAT--P  338 (466)
Q Consensus       283 ---------------~Dle~Le~ai~~---~~tklV~lesP~NPtG-~v~d---l~~Ia~la~~~gillIvDea~a~--~  338 (466)
                                     .|+++|++++++   .++++|++++|+||+| .+++   +++|.++|++||++||+|+++..  .
T Consensus       146 ~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a  225 (460)
T PRK13238        146 DEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENA  225 (460)
T ss_pred             cccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhh
Confidence                           578999999974   2499999999999997 6765   67999999999999999997521  1


Q ss_pred             ---------Cccccc-------ccCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHH-----hCCCchHHHH
Q 012296          339 ---------LNQKAL-------SLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHV-----LGGALNPNAA  396 (466)
Q Consensus       339 ---------~~~~~l-------~~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~-----~G~~lsp~~a  396 (466)
                               +.....       ....|+++.|..|.+.++   .||+++++ ++++++++.....     .-++++....
T Consensus       226 ~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~---~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~  302 (460)
T PRK13238        226 YFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVN---IGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDM  302 (460)
T ss_pred             hhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCc---ceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHH
Confidence                     111111       123799999999987766   37999988 5888888766321     1122333323


Q ss_pred             HHHHHhhHH--HHHHHHHHHHHHHHHHHHHHcC
Q 012296          397 YLIIRGMKT--LHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       397 ~l~l~~L~t--l~~R~~~~~~na~~La~~L~~~  427 (466)
                      .++..+++.  -...++...++++.|.+.|++.
T Consensus       303 ~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~  335 (460)
T PRK13238        303 EALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEA  335 (460)
T ss_pred             HHHHhhHHHhhChHHHHHHHHHHHHHHHHHHHC
Confidence            333333432  1233444455788999999875

>PLN02231 alanine transaminase

Probab=99.80  E-value=2e-17  Score=178.77  Aligned_cols=216  Identities=16%  Similarity=0.195  Sum_probs=145.6

Q ss_pred             HHHHHHHHHhhh----CC---CcEEEeCCHH-HHHHHHHHHHcc-CCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC-
Q 012296          212 TVVVEEKMSALE----GA---ESTVIMASGM-SASTVMLLALVP-AGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-  281 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~---e~~l~~sSGs-~Ai~~al~all~-~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd-  281 (466)
                      ...|++.+|+++    |.   .+.|++++|+ +|+..++..++. +||.|+++.|.|+.....+    ...|.++..++ 
T Consensus       170 ~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~----~~~g~~~v~~~l  245 (534)
T PLN02231        170 IKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASI----ALHGGTLVPYYL  245 (534)
T ss_pred             cHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHH----HHcCCEEEEEec
Confidence            456667776654    42   3456666665 999999999884 7999999999999765433    34565555542 


Q ss_pred             ------CCCHHHHHHhhcCC-----CceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc--c---
Q 012296          282 ------PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ--K---  342 (466)
Q Consensus       282 ------~~Dle~Le~ai~~~-----~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~--~---  342 (466)
                            ..|+++|++++++.     ++++|++.+|+||||.+++   +++|+++|+++|++||+||+|....+.  .   
T Consensus       246 ~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~  325 (534)
T PLN02231        246 DEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFH  325 (534)
T ss_pred             CcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcc
Confidence                  23789999988641     4899999999999999985   678899999999999999998754321  1   


Q ss_pred             cc-c----cC------CcEEEECCcccc-CccccceeEEEEe---CHHHHHHHHHHHHHhCC-Cc-hHHHHHHHHH----
Q 012296          343 AL-S----LG------ADLVLHSATKFI-GGHNDVLAGSISG---SGKLVTQIRNLHHVLGG-AL-NPNAAYLIIR----  401 (466)
Q Consensus       343 ~l-~----~g------aDivv~S~sK~l-gg~gdv~gG~ivg---~~eli~~l~~~~~~~G~-~l-sp~~a~l~l~----  401 (466)
                      .+ .    .|      .-++++|+||.+ +.+| .++||++.   ++++++++.+......+ .. ....+..++.    
T Consensus       326 s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pG-lRiGy~~~~~~~~~l~~~l~k~~~~~~~s~~~~Q~~~~~~l~~p~~  404 (534)
T PLN02231        326 SFKKVARSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVMSPPKP  404 (534)
T ss_pred             cHHHHHhhhccccCCceEEEEeccCcccccCCc-cceEEEEEecCCHHHHHHHHHHHhhhcCCChHHHHHHHHHhCCCCC
Confidence            11 0    11      137789999976 5566 45788875   68888888766542211 11 1122222221    


Q ss_pred             ---hhH----HHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 012296          402 ---GMK----TLHLRVQQQNSTALRMAKILEAHPKVKR  432 (466)
Q Consensus       402 ---~L~----tl~~R~~~~~~na~~La~~L~~~p~V~~  432 (466)
                         ..+    ......+.+.++++.+.+.|++++++..
T Consensus       405 ~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~  442 (534)
T PLN02231        405 GDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTC  442 (534)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence               111    1222245677888999999998877653

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.79  E-value=1.4e-17  Score=171.99  Aligned_cols=212  Identities=22%  Similarity=0.251  Sum_probs=172.2

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHH
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~  287 (466)
                      ..+...+||+.||+++|.+.+++++||-.|+..++.+++++||.|+.+...|.+....    .+..+.++..+...|++.
T Consensus        82 ~~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG----~rls~a~~~~f~HnD~~~  157 (388)
T COG0156          82 TSDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDG----IRLSRAEVRRFKHNDLDH  157 (388)
T ss_pred             CcHHHHHHHHHHHHHhCCCcEEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHHH----HHhCCCcEEEecCCCHHH
Confidence            3578899999999999999999999999999999999999999999999999885533    334567788888899999


Q ss_pred             HHHhhcCC-----CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccc-------c---ccCCcEEE
Q 012296          288 LEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA-------L---SLGADLVL  352 (466)
Q Consensus       288 Le~ai~~~-----~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~-------l---~~gaDivv  352 (466)
                      ||+.+++.     +.++|++|......|.+.||++|.+++++||.+|+|||+++.++.-.-       .   ....||++
T Consensus       158 Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~  237 (388)
T COG0156         158 LEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIV  237 (388)
T ss_pred             HHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEE
Confidence            99999762     158999999999999999999999999999999999999887654311       1   12248999


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHHHHHHH--HHhCCCchHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRG---MKTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~--~~~G~~lsp~~a~l~l~~---L~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      .|++|.||..    ||++.++.++++.++...  ..+...++|..+..+...   ++....|.+++.++...+...++..
T Consensus       238 gTlsKAlGs~----Gg~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~  313 (388)
T COG0156         238 GTLGKALGSS----GGYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKAL  313 (388)
T ss_pred             EEchhhhccc----CceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999964    699999999999887643  356778888765554444   4445577788888888887655543

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.79  E-value=2.2e-17  Score=171.91  Aligned_cols=211  Identities=16%  Similarity=0.191  Sum_probs=146.3

Q ss_pred             hhHHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          210 PTTVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       210 p~~~~Lee~LA~l~g--------~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      .....+++.++++++        .++.++++++++++..++.+++.+||.|++++|+|......    ++..|+++.+++
T Consensus        73 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~~~----~~~~g~~v~~v~  148 (394)
T PRK06836         73 AGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFY----VDNHGGKLVVVP  148 (394)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHH----HHHcCCEEEEEe
Confidence            445567777777653        13444445555999999999999999999999999885533    345688877775


Q ss_pred             C------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHh------cCCEEEEeCCCCCCCcc--c--
Q 012296          282 P------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHK------KGAIVCIDGTFATPLNQ--K--  342 (466)
Q Consensus       282 ~------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~------~gillIvDea~a~~~~~--~--  342 (466)
                      .      .|+++++++++++ +++|++++|+||||.+++   +++|+++|++      ||+++|+|++|......  .  
T Consensus       149 ~~~~~~~~d~~~l~~~~~~~-~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~  227 (394)
T PRK06836        149 TDTDTFQPDLDALEAAITPK-TKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVP  227 (394)
T ss_pred             cCCccCcCCHHHHHhhcCcC-ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCC
Confidence            3      3689999999774 999999999999999987   5677888898      89999999998743221  0  


Q ss_pred             c-c-ccCCcEEEECCccccCccccceeEEEEeCHHHHHH------HHHHHHHhC-CCchHHHHHHHHHhhHHHHHHHHHH
Q 012296          343 A-L-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ------IRNLHHVLG-GALNPNAAYLIIRGMKTLHLRVQQQ  413 (466)
Q Consensus       343 ~-l-~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~------l~~~~~~~G-~~lsp~~a~l~l~~L~tl~~R~~~~  413 (466)
                      . . .....+++.|+||.++.+| .+.||+++++++.+.      +.......+ ...+.....++.+.++.- .+.+++
T Consensus       228 ~~~~~~~~~i~~~S~SK~~~~pG-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~  305 (394)
T PRK06836        228 YIFKYYDNSIVVYSFSKSLSLPG-ERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDAT-VDVSIY  305 (394)
T ss_pred             ChHHccCcEEEEecchhhccCcc-eeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCCh-HHHHHH
Confidence            0 1 1234689999999999777 457999988766432      111122222 123444444434444331 234556


Q ss_pred             HHHHHHHHHHHHcC
Q 012296          414 NSTALRMAKILEAH  427 (466)
Q Consensus       414 ~~na~~La~~L~~~  427 (466)
                      .++++.+.+.|+++
T Consensus       306 ~~~r~~l~~~L~~~  319 (394)
T PRK06836        306 KRNRDLLYDGLTEL  319 (394)
T ss_pred             HHHHHHHHHHHHhC
Confidence            67788888888876

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.79  E-value=3.2e-17  Score=166.54  Aligned_cols=214  Identities=17%  Similarity=0.212  Sum_probs=152.1

Q ss_pred             hhHHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC---
Q 012296          210 PTTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e----~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---  282 (466)
                      +..+++++.+++++|.+    ..+++++|++++..++.+++.+||++++..+.+.+..  +...++..|.++..++.   
T Consensus        31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~--~~~~a~~~g~~~~~i~~~~~  108 (355)
T TIGR03301        31 DVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGER--LAKICEYLGIPHTDLNFSEY  108 (355)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhH--HHHHHHHcCCceEEEecCCC
Confidence            66889999999999984    2446789999999999999888888776555544321  22334556777776642   


Q ss_pred             --CCHHHHHHhhcCC-CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEECCccc
Q 012296          283 --ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKF  358 (466)
Q Consensus       283 --~Dle~Le~ai~~~-~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S~sK~  358 (466)
                        .|+++++++++++ ++++|++.+++|++|.+.|+++|.++|+++|+++|+|++++.+. ..+...+++|+++.|++|+
T Consensus       109 ~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~  188 (355)
T TIGR03301       109 EPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKC  188 (355)
T ss_pred             CCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcc
Confidence              3789999998643 36788888899999999999999999999999999999865432 2333456899999999999


Q ss_pred             cCccccceeEEEEeCHHHHHHHHHHHH-----------------HhCCCchHHHHHHHHHhhHH------HHHHHHHHHH
Q 012296          359 IGGHNDVLAGSISGSGKLVTQIRNLHH-----------------VLGGALNPNAAYLIIRGMKT------LHLRVQQQNS  415 (466)
Q Consensus       359 lgg~gdv~gG~ivg~~eli~~l~~~~~-----------------~~G~~lsp~~a~l~l~~L~t------l~~R~~~~~~  415 (466)
                      ++++.  ..|++++++++++.++....                 ....+.+....+.+...++.      +..++++.++
T Consensus       189 l~~~~--G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~  266 (355)
T TIGR03301       189 LEGVP--GFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRR  266 (355)
T ss_pred             cccCC--ceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            86553  24899999998877652100                 00112233332322223322      4556667788


Q ss_pred             HHHHHHHHHHcC
Q 012296          416 TALRMAKILEAH  427 (466)
Q Consensus       416 na~~La~~L~~~  427 (466)
                      +++.+.+.|+++
T Consensus       267 ~~~~~~~~L~~~  278 (355)
T TIGR03301       267 NRELLVDGLRAL  278 (355)
T ss_pred             HHHHHHHHHHHc
Confidence            889999999876

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK06855 aminotransferase; Validated

Probab=99.79  E-value=2e-17  Score=174.56  Aligned_cols=213  Identities=15%  Similarity=0.192  Sum_probs=138.3

Q ss_pred             HHHHHHHHHhhh----CC---CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC--
Q 012296          212 TVVVEEKMSALE----GA---ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--  281 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~---e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd--  281 (466)
                      ..+|++.+++++    |.   .+.|++++|+ +|+..++. ++.+||.|++++|+|+... ...  ....|+++..++  
T Consensus        75 ~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~-~~~--~~~~g~~~v~v~~~  150 (433)
T PRK06855         75 VLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-LLRREARVIGPSPAYSTHS-SAE--AAHAGYPPVTYRLD  150 (433)
T ss_pred             CHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-hcCCCCeEEEeCCCCchHH-HHH--HHhcCCeEEEEecc
Confidence            445666666654    42   2346566665 88888874 8899999999999999743 211  112344444332  


Q ss_pred             -----CCCHHHHHHhhcC-CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----cc-cc-
Q 012296          282 -----PADMEGLEAALNN-NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----AL-SL-  346 (466)
Q Consensus       282 -----~~Dle~Le~ai~~-~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----~l-~~-  346 (466)
                           ..|+++|+++++. .+++++++++|+||||.+++   +++|+++|+++|++||+||+|....+..    ++ .+ 
T Consensus       151 ~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~  230 (433)
T PRK06855        151 PENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVI  230 (433)
T ss_pred             cccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHc
Confidence                 1378999999863 24799999999999999997   5678888999999999999987543211    11 11 


Q ss_pred             --CCcEEEECCccccCccccceeEEEEeC-----HH---HHHHHHHHHHHhCCCchHHHHHHHHHhh------HHHHHHH
Q 012296          347 --GADLVLHSATKFIGGHNDVLAGSISGS-----GK---LVTQIRNLHHVLGGALNPNAAYLIIRGM------KTLHLRV  410 (466)
Q Consensus       347 --gaDivv~S~sK~lgg~gdv~gG~ivg~-----~e---li~~l~~~~~~~G~~lsp~~a~l~l~~L------~tl~~R~  410 (466)
                        +..|++.|+||.++.+|. +.||++++     ++   +++.+...... ....+....+++...+      +.++...
T Consensus       231 ~~~~~I~~~S~SK~~~~pGl-RiG~ii~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~  308 (433)
T PRK06855        231 GDVPGIALKGISKELPWPGS-RCGWIEVYNADKDEVFKKYINSILNAKMI-EVCSTTLPQMAIPRIMSHPEYKNYLKERN  308 (433)
T ss_pred             CcCCeEEEecCccccCCCcc-eEEEEEEeCCchhhHHHHHHHHHHHhhcc-ccCCChHHHHHHHHhhcCCcHHHHHHHHH
Confidence              234899999999998874 57888862     22   23333322221 1122333333333333      2344555


Q ss_pred             HHHHHHHHHHHHHHHcCCCe
Q 012296          411 QQQNSTALRMAKILEAHPKV  430 (466)
Q Consensus       411 ~~~~~na~~La~~L~~~p~V  430 (466)
                      +...++++.+.+.|++++++
T Consensus       309 ~~~~~r~~~~~~~L~~~~~~  328 (433)
T PRK06855        309 KRYEKRSNIAYEKLKDVPGL  328 (433)
T ss_pred             HHHHHHHHHHHHHHhcCCCe
Confidence            66778888899999876553

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.78  E-value=7.1e-19  Score=176.14  Aligned_cols=239  Identities=23%  Similarity=0.298  Sum_probs=171.1

Q ss_pred             CChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHH
Q 012296          186 KKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIF  265 (466)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~  265 (466)
                      ++.++++++...+.+.-.|+  .++...+|++.+++++|.+.++++.+|+.|+.++++.++++++.||+..+.|......
T Consensus         7 ~~~~m~~a~~~a~~gd~~Yg--~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~   84 (290)
T PF01212_consen    7 PTPAMLEAMAAANVGDDAYG--EDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDET   84 (290)
T ss_dssp             S-HHEEHHHHHTTSB-CCTT--SSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSST
T ss_pred             CCHHHHHHHHccccCCcccC--CChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHhcCCceeccccceeeeecc
Confidence            45555555544343333566  5899999999999999999999999999999999999999999999988866432111


Q ss_pred             HHhhcccCCceEEEeCC-----CCHHHHHHhhcC-----CCceEEEEeCCCCCC-cccc---cHHHHHHHHHhcCCEEEE
Q 012296          266 IETVLPKMGITATVIDP-----ADMEGLEAALNN-----NNVSLFFTESPTNPF-LRCV---DVKLVSDLCHKKGAIVCI  331 (466)
Q Consensus       266 ~~~~l~~~Gi~v~~vd~-----~Dle~Le~ai~~-----~~tklV~lesP~NPt-G~v~---dl~~Ia~la~~~gillIv  331 (466)
                      - ......|.++..++.     .++++|+++++.     .++++|++++|+|.. |.++   ++++|.++||+||+.|++
T Consensus        85 g-a~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhm  163 (290)
T PF01212_consen   85 G-AIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHM  163 (290)
T ss_dssp             T-HHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEE
T ss_pred             c-hhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEE
Confidence            0 011225776666642     378999998865     348999999999864 6777   477888999999999999


Q ss_pred             eCCCC---C---CCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCch---HHHH---H--
Q 012296          332 DGTFA---T---PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN---PNAA---Y--  397 (466)
Q Consensus       332 Dea~a---~---~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~ls---p~~a---~--  397 (466)
                      |++-.   .   ......+..++|++..|++|.++.++   |++++++++++++.+.+++.+|+.+.   ...+   |  
T Consensus       164 DGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~---Gavl~~~~~~i~~~~~~~k~~gg~~~~~G~~~a~~~~~~  240 (290)
T PF01212_consen  164 DGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAPG---GAVLAGNKEFIAKARRQRKRLGGGMRQAGVLAAAELYQF  240 (290)
T ss_dssp             EETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSS---EEEEEESHHHHHHHHHHHHHHTHHHHHTTHHHHHHHHHH
T ss_pred             ehhhHHHhhhcccccHHHHhhhCCEEEEEEEccccccc---ceEEEechHHHHHHHHHHHHhccCeeecceeeeechhhH
Confidence            99931   1   11122334579999999999999884   89999999988877777777776543   2222   1  


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCe
Q 012296          398 LIIRGMKTLHLRVQQQNSTALRMAKILEAHPKV  430 (466)
Q Consensus       398 l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V  430 (466)
                      ..++.++.-..++.+..+++++|++.|+..+.+
T Consensus       241 ~~l~~l~~~~~~~~~~~~~A~~La~~l~~~~~~  273 (290)
T PF01212_consen  241 AALRALELWLERARHANAMAKRLAAGLEALGGV  273 (290)
T ss_dssp             HHHCHEECSHHHHHCHHHHHHCHHHCHHEECEE
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            223344444567788889999999999998765

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.78  E-value=2.8e-17  Score=170.38  Aligned_cols=169  Identities=19%  Similarity=0.245  Sum_probs=129.2

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHH-HHHHHHHHHccC--CCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC-
Q 012296          210 PTTVVVEEKMSALEGAE--STVIMASGMS-ASTVMLLALVPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-  283 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e--~~l~~sSGs~-Ai~~al~all~~--Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-  283 (466)
                      +..+++++++++++|.+  +.+++++|+. ++.+++..++.+  ||+|+++++.|+.+...+.......|.++++++.. 
T Consensus        64 ~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~  143 (398)
T cd00613          64 QALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDE  143 (398)
T ss_pred             HHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCC
Confidence            45678999999999975  6667776774 444555555666  99999999999987766654444556777776542 


Q ss_pred             ----CHHHHHHhhcCCCceEEEEeCCCCCCcccccH-HHHHHHHHhcCCEEEEeCCCCCC-CcccccccCCcEEEECCcc
Q 012296          284 ----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDV-KLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATK  357 (466)
Q Consensus       284 ----Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl-~~Ia~la~~~gillIvDea~a~~-~~~~~l~~gaDivv~S~sK  357 (466)
                          |+++++++++++ +++|++++|+ ++|.+.|+ ++|.++|+++|+++|+|+++..+ ....+..+++|+++.|++|
T Consensus       144 ~~~~d~~~l~~~i~~~-t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K  221 (398)
T cd00613         144 GGTVDLEALKEEVSEE-VAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQK  221 (398)
T ss_pred             CCCcCHHHHHHhcCCC-eEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccc
Confidence                689999999875 9999999985 89999885 99999999999999999987543 3344556789999999999


Q ss_pred             ccCcc--ccceeEEEEeCHHHHHHH
Q 012296          358 FIGGH--NDVLAGSISGSGKLVTQI  380 (466)
Q Consensus       358 ~lgg~--gdv~gG~ivg~~eli~~l  380 (466)
                      ++.+.  |..++|+++.++++++.+
T Consensus       222 ~~~p~g~Ggp~~g~l~~~~~~~~~~  246 (398)
T cd00613         222 TGVPHGGGGPGAGFFAVKKELVRFL  246 (398)
T ss_pred             cCCCCCCCCCceeEEEEhhhhHhhC
Confidence            98321  112478999988877654

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.78  E-value=2.1e-17  Score=169.85  Aligned_cols=214  Identities=17%  Similarity=0.196  Sum_probs=155.0

Q ss_pred             hhHHHHHHHHHhhhCCC---c-EEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC---
Q 012296          210 PTTVVVEEKMSALEGAE---S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e---~-~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---  282 (466)
                      ...+++++.+++++|++   . .+++++|+.++..++.++..+||+|++..+.|.+..  +...++..|+++..++.   
T Consensus        37 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~~~~~g~~~~~i~~~~~  114 (368)
T PRK13479         37 ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGAR--IAQIAEYLGIAHVVLDTGED  114 (368)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHH--HHHHHHHcCCcEEEEECCCC
Confidence            36788999999999983   3 345678899999999999999999998887776643  22445667888777653   


Q ss_pred             --CCHHHHHHhhcCC-CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEECCccc
Q 012296          283 --ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKF  358 (466)
Q Consensus       283 --~Dle~Le~ai~~~-~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S~sK~  358 (466)
                        .|+++++++++++ ++++|++.+|+||||.+.|+++|.++|+++|+++|+|+++..+. ..+...+++|+++.|++|+
T Consensus       115 ~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~  194 (368)
T PRK13479        115 EPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKC  194 (368)
T ss_pred             CCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCccccccccCceEEEecCccc
Confidence              3689999988643 36789999999999999999999999999999999998754432 2333456899999999999


Q ss_pred             cCccccceeEEEEeCHHHHHHHHHHHHHh--------------C---CCchHHHHH---HHHHhh-H--HHHHHHHHHHH
Q 012296          359 IGGHNDVLAGSISGSGKLVTQIRNLHHVL--------------G---GALNPNAAY---LIIRGM-K--TLHLRVQQQNS  415 (466)
Q Consensus       359 lgg~gdv~gG~ivg~~eli~~l~~~~~~~--------------G---~~lsp~~a~---l~l~~L-~--tl~~R~~~~~~  415 (466)
                      +.|+.+  .|+++.++++++++......+              +   .+.+....+   .++..+ +  .++.+.+++.+
T Consensus       195 l~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~  272 (368)
T PRK13479        195 IEGVPG--FGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYAN  272 (368)
T ss_pred             cccCCC--ceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            866542  499999998887765422110              1   012211111   122222 1  14556677888


Q ss_pred             HHHHHHHHHHcC
Q 012296          416 TALRMAKILEAH  427 (466)
Q Consensus       416 na~~La~~L~~~  427 (466)
                      +++.+.+.|+++
T Consensus       273 ~~~~l~~~L~~~  284 (368)
T PRK13479        273 NQRTLVAGMRAL  284 (368)
T ss_pred             HHHHHHHHHHHc
Confidence            888999999876

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.78  E-value=2e-17  Score=169.76  Aligned_cols=214  Identities=18%  Similarity=0.197  Sum_probs=151.7

Q ss_pred             hhHHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC---
Q 012296          210 PTTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e----~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---  282 (466)
                      ...+++++.+++++|++    ..++++||++++..++.+++.+||++++..+.+.+..  +...++..|++++.++.   
T Consensus        35 ~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~a~~~g~~~~~v~~~~~  112 (363)
T TIGR02326        35 IVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGAR--IVQIAEYLGIPHHVVDTGEV  112 (363)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCCCC
Confidence            45677899999999984    2455678889999999999888888766555554432  22345667887776653   


Q ss_pred             --CCHHHHHHhhcCC-CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEECCccc
Q 012296          283 --ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKF  358 (466)
Q Consensus       283 --~Dle~Le~ai~~~-~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S~sK~  358 (466)
                        .|+++++++++.+ ++++|.+.+++||||.+.|+++|.++||++|+++|+|++++.+. ..+...+++|+++.|++|+
T Consensus       113 ~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~  192 (363)
T TIGR02326       113 EPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKC  192 (363)
T ss_pred             CCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcCccEEEecCccc
Confidence              3789999998753 36788888999999999999999999999999999999876432 2344567899999999999


Q ss_pred             cCccccceeEEEEeCHHHHHHHHHHHH------------H---hC---CCchHHHHHHHHHhhHH------HHHHHHHHH
Q 012296          359 IGGHNDVLAGSISGSGKLVTQIRNLHH------------V---LG---GALNPNAAYLIIRGMKT------LHLRVQQQN  414 (466)
Q Consensus       359 lgg~gdv~gG~ivg~~eli~~l~~~~~------------~---~G---~~lsp~~a~l~l~~L~t------l~~R~~~~~  414 (466)
                      ++++.+  .|+++.+++.++++.....            .   -|   .+.+....+.+...++.      ++.+.+++.
T Consensus       193 l~~p~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~  270 (363)
T TIGR02326       193 IQGVPG--FGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQ  270 (363)
T ss_pred             cccCCc--ceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            976642  5999999887766432100            0   01   01222222222222222      345667788


Q ss_pred             HHHHHHHHHHHcC
Q 012296          415 STALRMAKILEAH  427 (466)
Q Consensus       415 ~na~~La~~L~~~  427 (466)
                      +++..+.+.|+++
T Consensus       271 ~~~~~l~~~L~~~  283 (363)
T TIGR02326       271 QNQKTLVAGMRAL  283 (363)
T ss_pred             HHHHHHHHHHHHc
Confidence            8888999998876

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.78  E-value=3e-17  Score=176.07  Aligned_cols=209  Identities=13%  Similarity=0.205  Sum_probs=138.3

Q ss_pred             HHHHHHHHhhhC--------C-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          213 VVVEEKMSALEG--------A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       213 ~~Lee~LA~l~g--------~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ..|++.||++++        . .+.|++++|+ +|+..++.+++.|||.|++++|.|++....+.   ...|+++..++.
T Consensus        97 ~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~---~~~G~~vv~v~~  173 (496)
T PLN02376         97 KKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLR---WRTGVEIIPVPC  173 (496)
T ss_pred             HHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHH---hhCCCEEEEEeC
Confidence            456666666543        2 3456666666 99999999999999999999999998654332   135777666643


Q ss_pred             -------CCHHHHHHhhc-----CCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----c
Q 012296          283 -------ADMEGLEAALN-----NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A  343 (466)
Q Consensus       283 -------~Dle~Le~ai~-----~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----~  343 (466)
                             .|+++++++++     ..++|+|++++|+||||.+++   +++|+++|+++|++||+||+|+...+..    +
T Consensus       174 ~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~s  253 (496)
T PLN02376        174 SSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVS  253 (496)
T ss_pred             CCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCccc
Confidence                   25777765532     124899999999999999997   5678888999999999999987532211    1


Q ss_pred             -ccc---------CCc--EEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhCCCchHHHHHHHHHhhH---H--
Q 012296          344 -LSL---------GAD--LVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---T--  405 (466)
Q Consensus       344 -l~~---------gaD--ivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~---t--  405 (466)
                       ..+         ..+  +++.|+||.||.+|. +.|+++++ +++.+.++... .++. .+...++++...++   .  
T Consensus       254 i~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGl-RvG~li~~~~~l~~~~~~~~-~~~~-vs~~~Q~a~~~~L~d~~~~~  330 (496)
T PLN02376        254 VAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGF-RVGIVYSFNDSVVSCARKMS-SFGL-VSSQTQLMLASMLSDDQFVD  330 (496)
T ss_pred             HHHhhccccccccCCCeEEEEEeccccCCCCcc-eEEEEEECCHHHHHHHHHHh-hcCC-CCHHHHHHHHHHhCChhHHH
Confidence             001         112  457999999998874 57888884 55655554433 2332 33444333332221   1  


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHcC
Q 012296          406 --LHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       406 --l~~R~~~~~~na~~La~~L~~~  427 (466)
                        +....++..++.+.+.+.|+++
T Consensus       331 ~~l~~~r~~l~~r~~~l~~~L~~~  354 (496)
T PLN02376        331 NFLMESSRRLGIRHKVFTTGIKKA  354 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC
Confidence              1222344566677788888764

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.78  E-value=8.7e-18  Score=151.40  Aligned_cols=156  Identities=23%  Similarity=0.271  Sum_probs=127.1

Q ss_pred             HHHHHHHHHhhh--CCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCC-----
Q 012296          212 TVVVEEKMSALE--GAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPAD-----  284 (466)
Q Consensus       212 ~~~Lee~LA~l~--g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~D-----  284 (466)
                      .+++++.+++++  +.+.++++++|++|+.+++.++.++|++|++.++.|++...   ..+...|.++..++..+     
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~   78 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYW---VAAELAGAKPVPVPVDDAGYGG   78 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehh---hHHHhcCCEEEEeccCCCCccc
Confidence            468999999999  77889999999999999999998889999999999998763   23455678887775431     


Q ss_pred             H--HHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc----cccccCCcEEEECCccc
Q 012296          285 M--EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ----KALSLGADLVLHSATKF  358 (466)
Q Consensus       285 l--e~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~----~~l~~gaDivv~S~sK~  358 (466)
                      .  +.+++.....+++++++++++|++|...|+++|.++|+++|+++|+|+++..+...    .....++|+++.|++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~  158 (170)
T cd01494          79 LDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKN  158 (170)
T ss_pred             hhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEEcccc
Confidence            1  24544443345899999999999999999999999999999999999998765443    34556899999999999


Q ss_pred             cCccccceeEEEEeC
Q 012296          359 IGGHNDVLAGSISGS  373 (466)
Q Consensus       359 lgg~gdv~gG~ivg~  373 (466)
                      +++++   +|+++++
T Consensus       159 ~~~~~---~G~l~~~  170 (170)
T cd01494         159 LGGEG---GGVVIVK  170 (170)
T ss_pred             cCCCc---eEEEEeC
Confidence            99854   7888764

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.78  E-value=9.1e-18  Score=170.44  Aligned_cols=200  Identities=15%  Similarity=0.115  Sum_probs=143.4

Q ss_pred             chhHHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHHcc------------CC--CEEEEcCCCCcchHHHHHhhc
Q 012296          209 NPTTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVP------------AG--GHIVTTTDCYRKTRIFIETVL  270 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e----~~l~~sSGs~Ai~~al~all~------------~G--d~Vlv~~~~y~~t~~~~~~~l  270 (466)
                      ....+++.+++++++|.+    +.+++++|++|+..++.+++.            +|  +.|+++++.|.+.....    
T Consensus        37 ~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~----  112 (345)
T cd06450          37 TEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAA----  112 (345)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHH----
Confidence            334455566667777864    678888888999998887743            23  47888888888754433    


Q ss_pred             ccCCceEEEeC-----CCCHHHHHHhhcCC-----CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc
Q 012296          271 PKMGITATVID-----PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN  340 (466)
Q Consensus       271 ~~~Gi~v~~vd-----~~Dle~Le~ai~~~-----~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~  340 (466)
                      ...|.+++.++     ..|+++|++++++.     ++++|+++.|+||+|.+.|+++|+++|+++|+++++|++|+.+..
T Consensus       113 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~  192 (345)
T cd06450         113 AYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLL  192 (345)
T ss_pred             HHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHh
Confidence            23366666654     24799999999750     378999999999999999999999999999999999999876442


Q ss_pred             c-ccc-----c-cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHh--hHHHHHHHH
Q 012296          341 Q-KAL-----S-LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG--MKTLHLRVQ  411 (466)
Q Consensus       341 ~-~~l-----~-~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~--L~tl~~R~~  411 (466)
                      . ...     . .++|+++.|+||+++++.  .+|+++.+                   ....|.+++.  ...++.+++
T Consensus       193 ~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~--g~g~~~~~-------------------~~~~~~~l~~l~~~g~~~~~~  251 (345)
T cd06450         193 PFPEPRHLDFGIERVDSISVDPHKYGLVPL--GCSAVLVR-------------------ALKLWATLRRFGRDGYGEHID  251 (345)
T ss_pred             hChhhHHHhcCccccCEEEEchhHhhCCCc--chHHHHHH-------------------HHHHHHHHHHHhHHHHHHHHH
Confidence            1 111     1 268999999999987764  35665443                   2223333332  234567778


Q ss_pred             HHHHHHHHHHHHHHcCCCeEEE
Q 012296          412 QQNSTALRMAKILEAHPKVKRV  433 (466)
Q Consensus       412 ~~~~na~~La~~L~~~p~V~~V  433 (466)
                      +..++++++.+.|++++++..+
T Consensus       252 ~~~~~~~~l~~~L~~~~~~~~~  273 (345)
T cd06450         252 RIVDLAKYLAELIRADPGFELL  273 (345)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEe
Confidence            8889999999999998877543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.78  E-value=6.9e-17  Score=171.75  Aligned_cols=210  Identities=16%  Similarity=0.174  Sum_probs=152.3

Q ss_pred             HHHHHHHHhhh----CC---CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC---
Q 012296          213 VVVEEKMSALE----GA---ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---  281 (466)
Q Consensus       213 ~~Lee~LA~l~----g~---e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd---  281 (466)
                      ..|++.+++++    |.   .+.|++|+|+ +|+.+++..+++|||.|++.+|+|.+....+    +..|+++..++   
T Consensus       135 ~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~----~~~g~~~~~vp~d~  210 (459)
T COG1167         135 PELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQAL----EALGARVIPVPVDE  210 (459)
T ss_pred             HHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHH----HHcCCcEEecCCCC
Confidence            34555555543    33   3567777777 9999999999999999999999999877544    45666666654   


Q ss_pred             -CCCHHHHHHhhcCCCceEEEEe-CCCCCCcccccH---HHHHHHHHhcCCEEEEeCCCCCCCcc--------cccccCC
Q 012296          282 -PADMEGLEAALNNNNVSLFFTE-SPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ--------KALSLGA  348 (466)
Q Consensus       282 -~~Dle~Le~ai~~~~tklV~le-sP~NPtG~v~dl---~~Ia~la~~~gillIvDea~a~~~~~--------~~l~~ga  348 (466)
                       ..|+|+|++.++..++|++|+. +-+||||.++++   ++|.++|++||+++|.|+.|+.....        .....+.
T Consensus       211 ~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~r  290 (459)
T COG1167         211 DGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGR  290 (459)
T ss_pred             CCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCC
Confidence             4489999999987668999983 235999999986   47999999999999999997653221        1112356


Q ss_pred             cEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHH----Hh-hHHHHHHH-HHHHHHHHHHHH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII----RG-MKTLHLRV-QQQNSTALRMAK  422 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l----~~-L~tl~~R~-~~~~~na~~La~  422 (466)
                      .|++.||||.+.+.-  +.||+++++++++++...+.......+.+....+.    .| ....-.|+ +.+.+..+.+.+
T Consensus       291 Viy~gSFSK~l~Pgl--RlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~  368 (459)
T COG1167         291 VIYLGSFSKTLAPGL--RLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLE  368 (459)
T ss_pred             EEEEeeehhhccccc--ceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999764  68999999999999988777666555544322211    22 22222333 445667778888


Q ss_pred             HHHcCC
Q 012296          423 ILEAHP  428 (466)
Q Consensus       423 ~L~~~p  428 (466)
                      .|+++.
T Consensus       369 ~L~~~~  374 (459)
T COG1167         369 ALAEYL  374 (459)
T ss_pred             HHHHhC
Confidence            888873

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.77  E-value=1.7e-17  Score=173.21  Aligned_cols=214  Identities=12%  Similarity=0.134  Sum_probs=137.8

Q ss_pred             CchhHHHHHHHHHhhh---CC-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCc-------
Q 012296          208 GNPTTVVVEEKMSALE---GA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI-------  275 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~---g~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi-------  275 (466)
                      +.+....|++.+|+++   +. .+.|++++|+ +++..+ ..++.+||+|++++|+|......+    +..|+       
T Consensus        73 p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~l-~~l~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~~~~  147 (402)
T TIGR03542        73 PEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDVFRL-QSLFGSDNTVAVQDPVYPAYVDSN----VMAGRAGVLDDD  147 (402)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHHH-HHhcCCCCEEEEeCCCCcchHHHH----HHcCCccccccc
Confidence            3455678999999865   33 3566777776 777764 567789999999999999865433    34455       


Q ss_pred             ----eEEEeCCCCHHHHHHhhc-CCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----c
Q 012296          276 ----TATVIDPADMEGLEAALN-NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A  343 (466)
Q Consensus       276 ----~v~~vd~~Dle~Le~ai~-~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----~  343 (466)
                          ++..++....+.+...+. ..++++|++++|+||||.+++   +++|+++|+++|+++|+||+|.......    +
T Consensus       148 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~  227 (402)
T TIGR03542       148 GRYSKITYLPCTKENNFIPDLPEEPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHS  227 (402)
T ss_pred             cccceEEEeecchhhCCCCCccccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcc
Confidence                666554321111111111 124899999999999999997   7788999999999999999987532211    1


Q ss_pred             c-cc----CCcEEEECCccccCccccceeEEEEeCHHHH--------HHHHHHHHHhCCCchHHHHHHHHHh-----hHH
Q 012296          344 L-SL----GADLVLHSATKFIGGHNDVLAGSISGSGKLV--------TQIRNLHHVLGGALNPNAAYLIIRG-----MKT  405 (466)
Q Consensus       344 l-~~----gaDivv~S~sK~lgg~gdv~gG~ivg~~eli--------~~l~~~~~~~G~~lsp~~a~l~l~~-----L~t  405 (466)
                      . ..    ...+++.|+||.+|.+| ++.||++++++++        +.+...........+.....++...     .+.
T Consensus       228 ~~~~~~~~~~vi~~~SfSK~~g~pG-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~  306 (402)
T TIGR03542       228 IFEIPGAKECAIEFRSFSKTAGFTG-VRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQP  306 (402)
T ss_pred             hhhCCCCcccEEEEecCccccCCCC-cceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhH
Confidence            1 11    23477899999999887 4579999998876        2221111111222333332222222     233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcC
Q 012296          406 LHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       406 l~~R~~~~~~na~~La~~L~~~  427 (466)
                      +...++...++++.+.+.|+++
T Consensus       307 ~~~~~~~~~~~~~~~~~~L~~~  328 (402)
T TIGR03542       307 ILEAISYYMENARILRKALEAA  328 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            4444456677788888898875

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK08354 putative aminotransferase; Provisional

Probab=99.77  E-value=3.5e-17  Score=165.08  Aligned_cols=204  Identities=18%  Similarity=0.188  Sum_probs=137.7

Q ss_pred             hHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHH
Q 012296          211 TTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE  289 (466)
Q Consensus       211 ~~~~Lee~LA~l~g~e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le  289 (466)
                      ....|++.++++++. + +++++|+ +++..++. ++.+||+|++++|+|.....    .++..|.++..++ .|++.++
T Consensus        41 ~~~~l~~~ia~~~~~-~-I~vt~G~~~al~~~~~-~~~~gd~vlv~~P~y~~~~~----~~~~~g~~~~~~~-~d~~~l~  112 (311)
T PRK08354         41 YYEWLEEEFSKLFGE-P-IVITAGITEALYLIGI-LALRDRKVIIPRHTYGEYER----VARFFAARIIKGP-NDPEKLE  112 (311)
T ss_pred             ChHHHHHHHHHHHCC-C-EEECCCHHHHHHHHHH-hhCCCCeEEEeCCCcHHHHH----HHHHcCCEEeecC-CCHHHHH
Confidence            356799999999984 3 5566666 88887764 44589999999999998653    3445677776653 5789999


Q ss_pred             HhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc-ccccCCcEEEECCccccCccccc
Q 012296          290 AALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-ALSLGADLVLHSATKFIGGHNDV  365 (466)
Q Consensus       290 ~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~-~l~~gaDivv~S~sK~lgg~gdv  365 (466)
                      +++++  ++++++++|+||||.+.+   +++|+++|+++|+++|+||+|....... .......+++.|+||.|+.+|. 
T Consensus       113 ~~~~~--~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~Gl-  189 (311)
T PRK08354        113 ELVER--NSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPGI-  189 (311)
T ss_pred             HhhcC--CCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcCCccc-
Confidence            88863  678999999999999987   5667777889999999999987643321 1123356899999999998874 


Q ss_pred             eeEEEEeCHHHHHHHHHHHHHhCCCchHHH-HHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012296          366 LAGSISGSGKLVTQIRNLHHVLGGALNPNA-AYLIIRG-MKTLHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       366 ~gG~ivg~~eli~~l~~~~~~~G~~lsp~~-a~l~l~~-L~tl~~R~~~~~~na~~La~~L~~~p  428 (466)
                      +.||+++   +.+.++..+..+..+..... +..++.+ .+.+..+++...+.++.+.+.|...|
T Consensus       190 RiG~~v~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  251 (311)
T PRK08354        190 RVGYVKG---FEEAFRSVRMPWSIGSTGYAFLEFLIEDDFEHLRKTMPLIWREKERFEKALYVKS  251 (311)
T ss_pred             eeeeeee---hHHHHHHcCCCccCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            5788887   45555554433322211111 1111221 23344444555555566666664444

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.77  E-value=2.6e-17  Score=172.21  Aligned_cols=211  Identities=14%  Similarity=0.151  Sum_probs=138.4

Q ss_pred             HHHHHHHHHhhh----CC---CcEEEeCCHH-HHHHHHHHHHcc-----CCCEEEE-cCCCCcchHHHHH--hhcccCCc
Q 012296          212 TVVVEEKMSALE----GA---ESTVIMASGM-SASTVMLLALVP-----AGGHIVT-TTDCYRKTRIFIE--TVLPKMGI  275 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~---e~~l~~sSGs-~Ai~~al~all~-----~Gd~Vlv-~~~~y~~t~~~~~--~~l~~~Gi  275 (466)
                      ...|++.|++++    |.   .+.|++++|+ +++.+++..++.     +||.|++ .+|+|+.......  ..+...+.
T Consensus        76 ~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~  155 (416)
T PRK09440         76 KDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRP  155 (416)
T ss_pred             CHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeeccc
Confidence            346777777665    42   3567777777 899999988885     6899999 6999998554221  11122222


Q ss_pred             eEEEeC------CCCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----c
Q 012296          276 TATVID------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----K  342 (466)
Q Consensus       276 ~v~~vd------~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~  342 (466)
                      .+..++      ..|+++|+  +.+ +++++++++|+||||.+++   +++|+++|+++|+++|+||+|......    .
T Consensus       156 ~~~~~~~~~~~~~~d~~~l~--~~~-~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~  232 (416)
T PRK09440        156 NIELLPEGQFKYHVDFEHLH--IDE-DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSE  232 (416)
T ss_pred             ccccccccccccCCCHHHcc--cCC-CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhh
Confidence            222221      24677776  344 4899999999999999997   567888899999999999999743211    1


Q ss_pred             --ccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH--H----HH-HHHHH
Q 012296          343 --ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT--L----HL-RVQQQ  413 (466)
Q Consensus       343 --~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~t--l----~~-R~~~~  413 (466)
                        +...+.-|++.|+||+ +.+| .+.||+++++++++++...........+.+...++...++.  +    .. ..+..
T Consensus       233 ~~~~~~~~vI~~~SfSK~-~~pG-lRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~  310 (416)
T PRK09440        233 ATPLWNPNIILCMSLSKL-GLPG-VRCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFY  310 (416)
T ss_pred             cCccccCCeEEEeccccc-CCCc-ceEEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence              1112345889999996 7776 56899999999999988877665544455444444433321  1    11 12223


Q ss_pred             HHHHHHHHHHHHcC
Q 012296          414 NSTALRMAKILEAH  427 (466)
Q Consensus       414 ~~na~~La~~L~~~  427 (466)
                      .++.+.+.+.|+++
T Consensus       311 ~~r~~~~~~~L~~~  324 (416)
T PRK09440        311 RQKVQLAIALLRRY  324 (416)
T ss_pred             HHHHHHHHHHHHHh
Confidence            45555566666543

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.77  E-value=4.5e-17  Score=172.63  Aligned_cols=210  Identities=15%  Similarity=0.201  Sum_probs=143.8

Q ss_pred             HHHHHHHHHhhhC--------C-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          212 TVVVEEKMSALEG--------A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       212 ~~~Lee~LA~l~g--------~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ...|++.+|++++        . .+.|++++|. +|+.+++.+++.+||.|+++.|.|++....+.   ...|+++..++
T Consensus        97 ~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~---~~~g~~vv~v~  173 (447)
T PLN02607         97 LKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLR---WRTGVKIVPIH  173 (447)
T ss_pred             hHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH---hcCCcEEEEEe
Confidence            4567777777653        1 2456667766 89999999999999999999999998654332   13466665553


Q ss_pred             C-------CCHHHHHHhhcC-----CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----
Q 012296          282 P-------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----  341 (466)
Q Consensus       282 ~-------~Dle~Le~ai~~-----~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----  341 (466)
                      .       .|++++++++++     .++|+|++++|+||||.+++   +++|.++|+++|+++|+||+|+...+.     
T Consensus       174 ~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~  253 (447)
T PLN02607        174 CDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFV  253 (447)
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcc
Confidence            2       368899888763     24899999999999999997   678888999999999999998753221     


Q ss_pred             ccc----c------cCCcEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCCchHHHHHHHHHhh-------
Q 012296          342 KAL----S------LGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM-------  403 (466)
Q Consensus       342 ~~l----~------~gaDivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L-------  403 (466)
                      ...    .      ...-+++.|+||.||.+| .+.|++++ ++++++.++.... ++. .+.....++...|       
T Consensus       254 S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~G-lRvG~ivs~n~~l~~~~~~~~~-~~~-~s~~~q~~~~~~L~d~~~~~  330 (447)
T PLN02607        254 SVAEIVEARGYKGVAERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMSS-FTL-VSSQTQHLLASMLSDEEFTE  330 (447)
T ss_pred             cHHHHHhhcCCCCCcCcEEEEEcchhcCCCCc-ceEEEEEEcCHHHHHHHHHHhh-cCC-CCHHHHHHHHHHhCCchhHH
Confidence            111    1      112378899999999887 45788887 6777777665432 222 2222222222222       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          404 KTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       404 ~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      +.+....+++.++.+.+.+.|+++
T Consensus       331 ~~l~~~r~~l~~~~~~~~~~L~~~  354 (447)
T PLN02607        331 NYIRTNRERLRKRYEMIVQGLRRA  354 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC
Confidence            123333455667778888899875

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.77  E-value=6.6e-17  Score=168.20  Aligned_cols=218  Identities=15%  Similarity=0.168  Sum_probs=151.0

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHccCC-CEEEEcCCCCcchHHHHHhh---------c
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETV---------L  270 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~all~~G-d~Vlv~~~~y~~t~~~~~~~---------l  270 (466)
                      ..+|.++...+|+++|+++++.   ++++++++|++|+..++.....+| ++|+..++.|++........         +
T Consensus        79 ~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~  158 (398)
T PRK03244         79 SNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPF  158 (398)
T ss_pred             cCccCCHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCC
Confidence            3456778888999999999875   367777899999999998766666 56777777888743222111         1


Q ss_pred             ccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCC------c
Q 012296          271 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL------N  340 (466)
Q Consensus       271 ~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~------~  340 (466)
                      ...+..+..++..|++++++++++ ++++|++|.++||+|.+.+    +++|.++|++||+++|+||++....      .
T Consensus       159 ~~~~~~~~~~~~~d~~~l~~~~~~-~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~  237 (398)
T PRK03244        159 EPLPGGVEHVPYGDVDALAAAVDD-DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFA  237 (398)
T ss_pred             CCCCCCceEeCCCCHHHHHHhhcC-CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHh
Confidence            111234455666689999999876 4999999999999999987    8899999999999999999985311      1


Q ss_pred             ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHHHH
Q 012296          341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTAL  418 (466)
Q Consensus       341 ~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~--~R~~~~~~na~  418 (466)
                      ........|++  +++|.+++ | ...|++++++++++.+...........++..+.+++..|+.+.  ...++..+..+
T Consensus       238 ~~~~~~~pDi~--t~sK~l~~-G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~  313 (398)
T PRK03244        238 HQHDGVTPDVV--TLAKGLGG-G-LPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGE  313 (398)
T ss_pred             hhhhCCCCCEE--EEchhhhC-C-cccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            11122336765  57899995 3 4578888888888776542221112345565555555555432  23455566677


Q ss_pred             HHHHHHHc
Q 012296          419 RMAKILEA  426 (466)
Q Consensus       419 ~La~~L~~  426 (466)
                      ++.+.|++
T Consensus       314 ~l~~~L~~  321 (398)
T PRK03244        314 QLRAGIEA  321 (398)
T ss_pred             HHHHHHHh
Confidence            78888876

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.77  E-value=3.6e-17  Score=170.93  Aligned_cols=213  Identities=15%  Similarity=0.127  Sum_probs=140.3

Q ss_pred             hhHHHHHHHHHhhhCC-------CcEEE---eCCHHHHHHHHHH---HHccCCCEEEEcCCCCcchHHHHHhhcccCCce
Q 012296          210 PTTVVVEEKMSALEGA-------ESTVI---MASGMSASTVMLL---ALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~-------e~~l~---~sSGs~Ai~~al~---all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~  276 (466)
                      ....+|++.+++++..       .+.++   +.+|+.|+.+++.   +++++||+|++++|+|+.....    ++..|.+
T Consensus        72 ~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~----~~~~G~~  147 (404)
T PTZ00376         72 EGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNI----FKSAGLN  147 (404)
T ss_pred             CCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHH----HHHcCCc
Confidence            3345788888876421       22344   3344477666653   6789999999999999986643    4456776


Q ss_pred             EEEeCC-------CCHHHHHHhhcC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc--
Q 012296          277 ATVIDP-------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK--  342 (466)
Q Consensus       277 v~~vd~-------~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~--  342 (466)
                      +..++.       .|++.++++++.  .+++++++++||||||.+++   +++|+++|++||+++|+|++|.......  
T Consensus       148 ~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~  227 (404)
T PTZ00376        148 VKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLD  227 (404)
T ss_pred             eeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHH
Confidence            666643       268899888852  23678888999999999986   5678888999999999999987543321  


Q ss_pred             ----cc----cc-CCcEEEECCccccCccccceeEEE---EeCHHHHHHHH----HHHHHhCCCchHHHHHHHHHhhH--
Q 012296          343 ----AL----SL-GADLVLHSATKFIGGHNDVLAGSI---SGSGKLVTQIR----NLHHVLGGALNPNAAYLIIRGMK--  404 (466)
Q Consensus       343 ----~l----~~-gaDivv~S~sK~lgg~gdv~gG~i---vg~~eli~~l~----~~~~~~G~~lsp~~a~l~l~~L~--  404 (466)
                          +.    .. ...+++.|+||.++.+|.+ .||+   ++++++++++.    +.......+.+...+.++...++  
T Consensus       228 ~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlR-vG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~  306 (404)
T PTZ00376        228 KDAYAIRLFAERGVEFLVAQSFSKNMGLYGER-IGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDP  306 (404)
T ss_pred             HHHHHHHHHHhcCCcEEEEEeCCCcccccccc-cceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCH
Confidence                01    11 1348899999999988854 6776   57887665443    22222223333343333333222  


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHHHcC
Q 012296          405 --------TLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       405 --------tl~~R~~~~~~na~~La~~L~~~  427 (466)
                              .+....++..++++.+.+.|+++
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  337 (404)
T PTZ00376        307 ELRAEWLSELKEMSGRIQNMRQLLYDELKAL  337 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                    12233456678888899999886

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.77  E-value=5.3e-17  Score=170.89  Aligned_cols=214  Identities=18%  Similarity=0.195  Sum_probs=153.7

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      |+  +++...+||+.+++++|.+.++++.+|++|+..++.++++|||.| ++++.|..+...+    ...|.++.+++. 
T Consensus        49 Y~--~~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~~~i----~~~Ga~pv~v~i~  121 (431)
T cd00617          49 YA--GSKSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSILLKPGRTV-PSNMHFDTTRGHI----EANGAVPVDLVID  121 (431)
T ss_pred             cC--CCCCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHhCCCCCEE-ccCCcccchHHHH----HhCCCEeEEEecc
Confidence            55  467788999999999999999999999999999999999999987 5778887765433    234555444432 


Q ss_pred             --------------CCHHHHHHhhcCC---CceEEEEeCCCCCC-ccccc---HHHHHHHHHhcCCEEEEeCCCCC----
Q 012296          283 --------------ADMEGLEAALNNN---NVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT----  337 (466)
Q Consensus       283 --------------~Dle~Le~ai~~~---~tklV~lesP~NPt-G~v~d---l~~Ia~la~~~gillIvDea~a~----  337 (466)
                                    .|+++|+++|+++   ++++|++++|+||+ |.+.+   +++|.++|++||++||.|++...    
T Consensus       122 ~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~  201 (431)
T cd00617         122 EAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAY  201 (431)
T ss_pred             cccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhh
Confidence                          4799999999853   37899999999998 88875   56789999999999999999331    


Q ss_pred             -------CCccccc-------ccCCcEEEECCccccCccccceeEEEEeCH-HHHHHHHHHHHH-----hCCCchHHHHH
Q 012296          338 -------PLNQKAL-------SLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHV-----LGGALNPNAAY  397 (466)
Q Consensus       338 -------~~~~~~l-------~~gaDivv~S~sK~lgg~gdv~gG~ivg~~-eli~~l~~~~~~-----~G~~lsp~~a~  397 (466)
                             ++.....       ....|.+..|++|.++.+   +||++++++ +++++++.+...     ..+.++.....
T Consensus       202 ~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~---~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~  278 (431)
T cd00617         202 FIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVN---IGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDME  278 (431)
T ss_pred             hhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCc---cceEEEeCcHHHHHHHHHhccccCCccccccccHHHHH
Confidence                   1111111       114788899999987776   489999986 688888754321     12233333322


Q ss_pred             HHHHhhHHH--HHHHHHHHHHHHHHHHHHHcC
Q 012296          398 LIIRGMKTL--HLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       398 l~l~~L~tl--~~R~~~~~~na~~La~~L~~~  427 (466)
                      ++..+|+..  ...+++..++++.|.+.|++.
T Consensus       279 A~A~gL~e~~~~~~l~~~~~~r~~l~~~L~~~  310 (431)
T cd00617         279 ALAQGLREAVEEDYLRHRVEQVRYLGDRLDEA  310 (431)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC
Confidence            223344331  244566666778899999976

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK07908 hypothetical protein; Provisional

Probab=99.76  E-value=5.9e-17  Score=165.71  Aligned_cols=205  Identities=16%  Similarity=0.156  Sum_probs=140.9

Q ss_pred             hHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC-----
Q 012296          211 TTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----  283 (466)
Q Consensus       211 ~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----  283 (466)
                      ....|++.++++++. .+.|++++|+ +++..++.  +.+| .+++..|+|....    ..++..|+++..++.+     
T Consensus        59 g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~--l~~~-~viv~~P~y~~~~----~~~~~~G~~i~~v~~~~~~~~  131 (349)
T PRK07908         59 DERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR--LRPR-RAAVVHPSFTEPE----AALRAAGIPVHRVVLDPPFRL  131 (349)
T ss_pred             chHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh--cCCC-eEEEeCCCChHHH----HHHHHcCCEEEeeccCcccCc
Confidence            567899999999986 4566666666 88888776  5665 5666789887644    3345578887766432     


Q ss_pred             CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc--c---cccCCcEEEECCccc
Q 012296          284 DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK--A---LSLGADLVLHSATKF  358 (466)
Q Consensus       284 Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~--~---l~~gaDivv~S~sK~  358 (466)
                      |++    .+++ +++++++++|+||||.+++.++|.++|++ +.++|+||+|.......  +   ......+++.|+||.
T Consensus       132 d~~----~l~~-~~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~  205 (349)
T PRK07908        132 DPA----AVPD-DADLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKT  205 (349)
T ss_pred             Chh----Hhcc-CCCEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEEEEeecccc
Confidence            333    3444 48999999999999999999999999964 78899999986432111  1   122335788899999


Q ss_pred             cCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHH-HH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCe
Q 012296          359 IGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI-IR--GMKTLHLRVQQQNSTALRMAKILEAHPKV  430 (466)
Q Consensus       359 lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~-l~--~L~tl~~R~~~~~~na~~La~~L~~~p~V  430 (466)
                      ++.+| ++.||+++++++++.++.....+........+... +.  ..+.+....++..++++.+.+.|+++ ++
T Consensus       206 ~~l~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~  278 (349)
T PRK07908        206 WSLAG-LRVGYALGAPDVLARLTRGRAHWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV-GA  278 (349)
T ss_pred             cCCcc-ceeeeeecCHHHHHHHHhcCCCCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC-Cc
Confidence            98776 45899999999999887655433222212222111 11  23445555666778888888999876 44

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.76  E-value=2.6e-16  Score=161.59  Aligned_cols=214  Identities=12%  Similarity=0.069  Sum_probs=148.9

Q ss_pred             chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc------cCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          209 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV------PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all------~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      ....+++++.|++++|.+  ..+++++|++++..++.++.      ++||+|+++++.|.+..    ..++..|+++..+
T Consensus        58 ~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~----~~~~~~G~~~~~v  133 (373)
T TIGR03812        58 KKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFE----KAAEMLGLELRYA  133 (373)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHH----HHHHHcCCeEEEE
Confidence            344588999999999984  45777788888877776553      36789999999997743    3345568887777


Q ss_pred             CC-----CCHHHHHHhhcCCCce-EEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-----------ccc
Q 012296          281 DP-----ADMEGLEAALNNNNVS-LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----------QKA  343 (466)
Q Consensus       281 d~-----~Dle~Le~ai~~~~tk-lV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-----------~~~  343 (466)
                      +.     .|+++++++++++ +. ++++ .|+||+|.+.|+++|.++|+++|+++|+|++|+.+..           .+.
T Consensus       134 ~~~~~~~~d~~~l~~~l~~~-~~~vv~~-~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~  211 (373)
T TIGR03812       134 PLDEDYTVDVKDVEDLIDDN-TIGIVGI-AGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDF  211 (373)
T ss_pred             eeCCCCCcCHHHHHHHHhhC-cEEEEEE-CCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccc
Confidence            53     3799999999875 54 5555 5899999999999999999999999999999864321           111


Q ss_pred             cccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCC--------CchHHH---HHHHHHhh--HHHHHHH
Q 012296          344 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG--------ALNPNA---AYLIIRGM--KTLHLRV  410 (466)
Q Consensus       344 l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~--------~lsp~~---a~l~l~~L--~tl~~R~  410 (466)
                      ...++|.+..|.+||..++. ..||+++.++++++.++........        +.+...   ++.+++.+  +.++.+.
T Consensus       212 ~~~~~d~~~~s~~K~~~~~~-~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~  290 (373)
T TIGR03812       212 SLPGVQSITIDPHKMGLSPI-PAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIV  290 (373)
T ss_pred             cCCCCCEEEECccccCCCcC-CceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHH
Confidence            12378999999999755443 2356777888888766422111111        122222   22222222  2345567


Q ss_pred             HHHHHHHHHHHHHHHcCCC
Q 012296          411 QQQNSTALRMAKILEAHPK  429 (466)
Q Consensus       411 ~~~~~na~~La~~L~~~p~  429 (466)
                      ++..++++++.+.|++++.
T Consensus       291 ~~~~~~~~~l~~~L~~~g~  309 (373)
T TIGR03812       291 AECMENTRYLVEELKKIGF  309 (373)
T ss_pred             HHHHHHHHHHHHHHHhCCC
Confidence            8888999999999998754

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.76  E-value=2.5e-17  Score=169.10  Aligned_cols=179  Identities=20%  Similarity=0.246  Sum_probs=149.6

Q ss_pred             HHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc-cCCC----EEEEcCCCCcch
Q 012296          190 ELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV-PAGG----HIVTTTDCYRKT  262 (466)
Q Consensus       190 ~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all-~~Gd----~Vlv~~~~y~~t  262 (466)
                      .+.+++.|++.. .|++......++.|+.+|++.|+  .+.+++.++|+++++++..+- ..+|    +||+.+..|+..
T Consensus        66 ~~~~~~~nPh~~-~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v  144 (428)
T KOG1549|consen   66 YLLEYLGNPHSR-SYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCV  144 (428)
T ss_pred             HHHHhhcCCCcc-ccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcch
Confidence            345566677655 78888888899999999999998  354444555599999999873 4566    999999999987


Q ss_pred             HHHHHhhcccCCceEEEeCCC-----CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCC
Q 012296          263 RIFIETVLPKMGITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT  337 (466)
Q Consensus       263 ~~~~~~~l~~~Gi~v~~vd~~-----Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~  337 (466)
                      ...+ ..++..|+++++++..     |++.++++|+++ |++|.+.+.+|.+|.++|+++|.++|+++|+.+++|.+++.
T Consensus       145 ~~s~-~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~-T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQav  222 (428)
T KOG1549|consen  145 LDSC-RALQEEGLEVTYLPVEDSGLVDISKLREAIRSK-TRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAV  222 (428)
T ss_pred             hHHH-HHHHhcCeEEEEeccCccccccHHHHHHhcCCC-ceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhc
Confidence            6555 4567778999988643     789999999995 99999999999999999999999999999999999999886


Q ss_pred             C-CcccccccCCcEEEECCccccCccccceeEEEEeCH
Q 012296          338 P-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG  374 (466)
Q Consensus       338 ~-~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~  374 (466)
                      + +..+.-++++|+++.|.|||||.++   .|++++++
T Consensus       223 G~i~vDV~eln~D~~s~s~HK~ygp~~---iGaLYvr~  257 (428)
T KOG1549|consen  223 GKIPVDVQELNADFLSISAHKIYGPPG---IGALYVRR  257 (428)
T ss_pred             CCccccHHHcCchheeeecccccCCCc---ceEEEEcc
Confidence            5 4466778899999999999999997   58888776

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.76  E-value=6.2e-17  Score=171.09  Aligned_cols=214  Identities=21%  Similarity=0.276  Sum_probs=154.0

Q ss_pred             HHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc-cCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC----C
Q 012296          212 TVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----D  284 (466)
Q Consensus       212 ~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all-~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~----D  284 (466)
                      ..++++.+++++|.+  ..+++++|++++.+++.++. .+||+|+++++.|+.+...+.......|++++.++..    |
T Consensus       114 ~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d  193 (447)
T PRK00451        114 IFEYQTMICELTGMDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDGVTD  193 (447)
T ss_pred             HHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCCCCC
Confidence            444557789999984  34455666688888888874 7999999999999987766655555678888887654    7


Q ss_pred             HHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEE--eCCCCCCCcccccccCCcEEEECCccc----
Q 012296          285 MEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI--DGTFATPLNQKALSLGADLVLHSATKF----  358 (466)
Q Consensus       285 le~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIv--Dea~a~~~~~~~l~~gaDivv~S~sK~----  358 (466)
                      +++++++++++ +++|++++| |+||.+.|+++|.++|+++|+++++  |... .+....+..+|+|+++.|.+|+    
T Consensus       194 ~~~l~~~i~~~-t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~~-~g~~~~~~~~~~D~~~~s~~k~~~~~  270 (447)
T PRK00451        194 LEALEAAVDDD-TAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPVS-LGLLKPPGEYGADIVVGEGQPLGIPL  270 (447)
T ss_pred             HHHHHHhcCCC-eEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChHH-hccCCCcccCCCCEEEECCCcCCCCC
Confidence            99999999875 999999999 8999999999999999999999998  5442 2333345678999999987775    


Q ss_pred             -cCccccceeEEEEeCHHHHHHHHH-------------------------HHHHhC----CCchH---HHHHHHHH--hh
Q 012296          359 -IGGHNDVLAGSISGSGKLVTQIRN-------------------------LHHVLG----GALNP---NAAYLIIR--GM  403 (466)
Q Consensus       359 -lgg~gdv~gG~ivg~~eli~~l~~-------------------------~~~~~G----~~lsp---~~a~l~l~--~L  403 (466)
                       ++|++   +|+++.++++++.+..                         .+...+    +...+   ..++..+.  +-
T Consensus       271 ~~~Gpg---~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~  347 (447)
T PRK00451        271 SFGGPY---LGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGP  347 (447)
T ss_pred             CCCCCC---chHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCH
Confidence             55553   7888888888776310                         000001    01111   22222222  22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 012296          404 KTLHLRVQQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       404 ~tl~~R~~~~~~na~~La~~L~~~p~V~  431 (466)
                      +.++.+.++..++++.+.+.|+++++++
T Consensus       348 ~g~~~~~~~~~~~~~~l~~~L~~~~g~~  375 (447)
T PRK00451        348 EGLRELAEQNHQKAHYLAERLAEIGGVE  375 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCEE
Confidence            3456667888899999999999988764

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.75  E-value=1.2e-16  Score=168.66  Aligned_cols=208  Identities=16%  Similarity=0.133  Sum_probs=155.9

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc--------------cCCCEEEEcCCCCcchHHHHHhhcccC-C
Q 012296          210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--------------PAGGHIVTTTDCYRKTRIFIETVLPKM-G  274 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all--------------~~Gd~Vlv~~~~y~~t~~~~~~~l~~~-G  274 (466)
                      ...++||+.||+++|.+++++++||..|+..++.++.              .++|.|+++...|.+.+..++. .+.. +
T Consensus       147 ~~h~~LE~~LA~f~g~e~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~l-s~~~~~  225 (476)
T PLN02955        147 TYHRLLESSLADLKKKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRL-AERQGN  225 (476)
T ss_pred             HHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHh-ccccCC
Confidence            5667899999999999999999999999999888772              4567889988889887655532 2222 4


Q ss_pred             ceEEEeCCCCHHHHHHhhcCC--CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc---------c
Q 012296          275 ITATVIDPADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------A  343 (466)
Q Consensus       275 i~v~~vd~~Dle~Le~ai~~~--~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~---------~  343 (466)
                      .++..++..|+++|++.++..  +.++|++|...++.|.+.|+++|.++|++||++||+||+++.+....         .
T Consensus       226 a~~~~f~HND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g  305 (476)
T PLN02955        226 VEVFVYRHCDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFN  305 (476)
T ss_pred             ceEEEeCCCCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhC
Confidence            777778899999999988532  25799999999999999999999999999999999999987543311         0


Q ss_pred             cccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHH---HHHHHHHHHHHHH
Q 012296          344 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTAL  418 (466)
Q Consensus       344 l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--~~G~~lsp~~a~l~l~~L~t---l~~R~~~~~~na~  418 (466)
                      .....||++.|++|.+|..    ||++++++++++.++....  .++..++|..+..++..++.   -..|.+++.+|.+
T Consensus       306 ~~~di~ii~~TLsKA~G~~----GGfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~  381 (476)
T PLN02955        306 CEADVDLCVGTLSKAAGCH----GGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVK  381 (476)
T ss_pred             CCCCCcEEEEeCccchhcc----CceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            1124689999999999865    5999999998888876443  34455555444333333333   2345566666666


Q ss_pred             HHHH
Q 012296          419 RMAK  422 (466)
Q Consensus       419 ~La~  422 (466)
                      ++.+
T Consensus       382 ~fr~  385 (476)
T PLN02955        382 EFKA  385 (476)
T ss_pred             HHHH
Confidence            5555

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.75  E-value=1.4e-16  Score=165.98  Aligned_cols=217  Identities=16%  Similarity=0.151  Sum_probs=150.6

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc---------CC-CEEEEcCCCCcchHHHHHhhcc-----
Q 012296          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP---------AG-GHIVTTTDCYRKTRIFIETVLP-----  271 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~---------~G-d~Vlv~~~~y~~t~~~~~~~l~-----  271 (466)
                      ..++...+|+++|+++.+.+.+++++||++|+..++.....         +| ++||..+..|++..........     
T Consensus        79 ~~~~~~~~l~~~l~~~~~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~  158 (396)
T PRK04073         79 FHSDQLGPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYK  158 (396)
T ss_pred             cCCHHHHHHHHHHHhcCCCCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccc
Confidence            45677888999999998888999999999999998876532         34 6788888777763321111110     


Q ss_pred             -cCC---ceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCc---
Q 012296          272 -KMG---ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN---  340 (466)
Q Consensus       272 -~~G---i~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~~---  340 (466)
                       .++   ..+..++..|+++++++++++ +++|++|+++||+|.+.+    +++|.++|+++|+++|+||++.....   
T Consensus       159 ~~~~~~~~~~~~~~~~d~~~l~~~i~~~-~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~  237 (396)
T PRK04073        159 RGFGPMLPGIKKIPYGDLEALKAAITPN-TAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGK  237 (396)
T ss_pred             cCCCCCCCCceEeCCCCHHHHHHhcccC-eEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcH
Confidence             011   123456667899999999774 999999999999999876    88999999999999999999774211   


Q ss_pred             ---ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHH
Q 012296          341 ---QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNS  415 (466)
Q Consensus       341 ---~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~--~R~~~~~~  415 (466)
                         ........|+++  ++|.+++++. ..|++++++++++.+...........++..+..++..|+.+.  ..+++..+
T Consensus       238 ~~~~~~~~~~pdi~~--~sK~lg~gg~-~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~  314 (396)
T PRK04073        238 LFACDWDNVTPDMYI--LGKALGGGVF-PISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLE  314 (396)
T ss_pred             HHHhhhcCCCCCEEE--ecccccCCCC-cceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence               111223457665  6899998753 468889999998877542211112235666666556665442  23355566


Q ss_pred             HHHHHHHHHHcC
Q 012296          416 TALRMAKILEAH  427 (466)
Q Consensus       416 na~~La~~L~~~  427 (466)
                      +.+++.+.|++.
T Consensus       315 ~~~~l~~~L~~l  326 (396)
T PRK04073        315 LGEYFKEQLKEI  326 (396)
T ss_pred             HHHHHHHHHHhh
Confidence            677788888764

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.75  E-value=2.5e-16  Score=161.51  Aligned_cols=213  Identities=13%  Similarity=0.098  Sum_probs=150.0

Q ss_pred             HHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHcc----CCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC---
Q 012296          212 TVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVP----AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (466)
Q Consensus       212 ~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all~----~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---  282 (466)
                      .+++++.+++++|.+  ..+++++|++++..++..+..    +||+|+++++.|.+..    ..++..|++++.++.   
T Consensus        61 ~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~----~~~~~~g~~~~~v~~~~~  136 (371)
T PRK13520         61 EEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFD----KAADMLGVELRRAPLDDD  136 (371)
T ss_pred             HHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHH----HHHHHcCceEEEecCCCC
Confidence            478999999999974  457777888998888776643    5789999999887643    334556888777753   


Q ss_pred             --CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc---c-----cccccCCcEEE
Q 012296          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---Q-----KALSLGADLVL  352 (466)
Q Consensus       283 --~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~---~-----~~l~~gaDivv  352 (466)
                        .|+++|+++++++ +++|++..++|++|.+.|+++|.++|+++|+++++|++|+.+..   .     +....++|.+.
T Consensus       137 ~~~d~~~l~~~i~~~-~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~  215 (371)
T PRK13520        137 YRVDVKAVEDLIDDN-TIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSIT  215 (371)
T ss_pred             CcCCHHHHHHHHhhC-CEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEE
Confidence              3799999999875 77777778899999999999999999999999999999874321   1     11124789999


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHHHHHHHHHh--------CCCchH---HHHHHHHHhh--HHHHHHHHHHHHHHHH
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL--------GGALNP---NAAYLIIRGM--KTLHLRVQQQNSTALR  419 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~--------G~~lsp---~~a~l~l~~L--~tl~~R~~~~~~na~~  419 (466)
                      .|.+|+..++. ..|++++.++++++.+.......        +++.+.   ..++.++..+  +.++.++++..+++++
T Consensus       216 ~s~~K~~~a~~-~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~  294 (371)
T PRK13520        216 IDPHKMGLAPI-PAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRW  294 (371)
T ss_pred             ECCccccCccC-CceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHH
Confidence            99999876543 23456666777777654221111        111111   2233333322  2345577888899999


Q ss_pred             HHHHHHcCCCeE
Q 012296          420 MAKILEAHPKVK  431 (466)
Q Consensus       420 La~~L~~~p~V~  431 (466)
                      +.+.|++. ++.
T Consensus       295 l~~~L~~~-g~~  305 (371)
T PRK13520        295 LAEELKER-GFE  305 (371)
T ss_pred             HHHHHHhC-CCE
Confidence            99999876 554

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.75  E-value=1.9e-16  Score=164.82  Aligned_cols=212  Identities=13%  Similarity=0.106  Sum_probs=138.4

Q ss_pred             hHHHHHHHHHhhhCC-------CcE--EEeCCHH-HHHHHHHHHH--ccCCCEEEEcCCCCcchHHHHHhhcccCCceEE
Q 012296          211 TTVVVEEKMSALEGA-------EST--VIMASGM-SASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (466)
Q Consensus       211 ~~~~Lee~LA~l~g~-------e~~--l~~sSGs-~Ai~~al~al--l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~  278 (466)
                      ....|++.+++++..       .+.  +++|+|+ +|+.+++..+  +.+||+|++++|+|+.....+    +..|+++.
T Consensus        70 G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~----~~~g~~~v  145 (396)
T PRK09257         70 GLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIF----EAAGLEVK  145 (396)
T ss_pred             CCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHH----HHcCCcEE
Confidence            345677777776421       233  3677776 8999888655  589999999999999866443    44666666


Q ss_pred             EeC-------CCCHHHHHHhhcC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----
Q 012296          279 VID-------PADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----  341 (466)
Q Consensus       279 ~vd-------~~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----  341 (466)
                      .++       ..|+++++++++.  .+++++++++|+||||.+++   +++|+++|++||+++|+|++|......     
T Consensus       146 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~  225 (396)
T PRK09257        146 TYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDA  225 (396)
T ss_pred             EEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHH
Confidence            553       2378899888763  22567777999999999986   567888899999999999998754321     


Q ss_pred             cc---c-cc-CCcEEEECCccccCccccceeEEEE---eCHHHH----HHHHHHHHHhCCCchHHHHHHHHHhh------
Q 012296          342 KA---L-SL-GADLVLHSATKFIGGHNDVLAGSIS---GSGKLV----TQIRNLHHVLGGALNPNAAYLIIRGM------  403 (466)
Q Consensus       342 ~~---l-~~-gaDivv~S~sK~lgg~gdv~gG~iv---g~~eli----~~l~~~~~~~G~~lsp~~a~l~l~~L------  403 (466)
                      .+   + .. ...+++.|+||.++.+|. +.||++   .+++.+    .+++..........+.....++...+      
T Consensus       226 ~~~~~~~~~~~~vi~i~SfSK~~~~~Gl-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~  304 (396)
T PRK09257        226 YGLRAFAAAGLELLVASSFSKNFGLYGE-RVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELR  304 (396)
T ss_pred             HHHHHHHhcCCcEEEEEEcCCcCccccc-cceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHH
Confidence            11   1 11 234889999999998775 467776   244443    33333322222222333322222211      


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          404 ----KTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       404 ----~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                          +.+....++..++++.+.+.|+++
T Consensus       305 ~~~~~~~~~~r~~~~~rr~~l~~~L~~~  332 (396)
T PRK09257        305 AEWEAELEEMRERIKAMRQLLVEALKAK  332 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                223334556677888888999876

>PLN02397 aspartate transaminase

Probab=99.74  E-value=2e-16  Score=166.45  Aligned_cols=213  Identities=15%  Similarity=0.161  Sum_probs=137.8

Q ss_pred             hhHHHHHHHHHhhhCCC-------cE-----EEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceE
Q 012296          210 PTTVVVEEKMSALEGAE-------ST-----VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA  277 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e-------~~-----l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v  277 (466)
                      ....+|++.+++++...       +.     ++.++|+.++...+..++.|||+|++++|.|+.....    ++..|.++
T Consensus        91 ~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~----~~~~g~~~  166 (423)
T PLN02397         91 EGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNI----FRDAGVPV  166 (423)
T ss_pred             CCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHH----HHHcCCeE
Confidence            34557888888865321       22     2234455455555666667999999999999986543    34456666


Q ss_pred             EEeC-------CCCHHHHHHhhcC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc---
Q 012296          278 TVID-------PADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---  342 (466)
Q Consensus       278 ~~vd-------~~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~---  342 (466)
                      ..++       ..|++.+++.+..  .+++++++++|+||||.+++   +++|+++|++||+++|+||+|.......   
T Consensus       167 ~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~  246 (423)
T PLN02397        167 RTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDA  246 (423)
T ss_pred             EEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhh
Confidence            5553       2378888777752  24789999999999999986   5678888999999999999987644311   


Q ss_pred             ---c---cc-cC-CcEEEECCccccCccccceeEEEE---eCHHHHHHHH----HHHHHhCCCchHHHHHHHHHhhHH--
Q 012296          343 ---A---LS-LG-ADLVLHSATKFIGGHNDVLAGSIS---GSGKLVTQIR----NLHHVLGGALNPNAAYLIIRGMKT--  405 (466)
Q Consensus       343 ---~---l~-~g-aDivv~S~sK~lgg~gdv~gG~iv---g~~eli~~l~----~~~~~~G~~lsp~~a~l~l~~L~t--  405 (466)
                         +   .. .+ .-+++.|+||.++.+|++ .||++   +++++++++.    ........+.+...+.++...|+.  
T Consensus       247 ~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~R-vG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~  325 (423)
T PLN02397        247 DAQSVRMFVEDGHEILVAQSYAKNMGLYGER-VGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPE  325 (423)
T ss_pred             hhHHHHHHHhcCCcEEEEEECcccCCCcccc-ceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHH
Confidence               1   11 12 248899999999988865 67763   4666555433    333222222333333333322211  


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHHcC
Q 012296          406 --------LHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       406 --------l~~R~~~~~~na~~La~~L~~~  427 (466)
                              +....++..++++.+.+.|+++
T Consensus       326 ~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~  355 (423)
T PLN02397        326 LFSEWTKELKGMADRIISMRQKLYDALEAR  355 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                    3344556778888999999886

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.74  E-value=1.7e-16  Score=163.88  Aligned_cols=211  Identities=18%  Similarity=0.137  Sum_probs=147.3

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHH
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~  287 (466)
                      .++..+++|+.||+++|++.++++++|+.|+..++..+.++||.|+++...|.++...+.. +.  +..+. +...|+++
T Consensus        54 ~~~~~~~~e~~la~~~~~~~~l~~~sG~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~-~~--~~~~~-~~~~d~~~  129 (370)
T PRK05937         54 PSSLLDDLEHKIAHFHGAPEAFIVPSGYMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSV-IS--GWHQS-FRHNDLDH  129 (370)
T ss_pred             ChHHHHHHHHHHHHHhCCCeEEEECChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHH-cC--CceEE-ecCCCHHH
Confidence            4678999999999999999999999999888776666667889999989999887765532 22  43444 45678999


Q ss_pred             HHHhhcC-----CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccc----cccC---CcEEEEC
Q 012296          288 LEAALNN-----NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKA----LSLG---ADLVLHS  354 (466)
Q Consensus       288 Le~ai~~-----~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~----l~~g---aDivv~S  354 (466)
                      |++.+++     .++.+|++++++|++|.+.|+++|.++|+++|+++++|++++.+.. .+.    ..++   .++++.|
T Consensus       130 l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~t  209 (370)
T PRK05937        130 LESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVT  209 (370)
T ss_pred             HHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEe
Confidence            9998863     2366888999999999999999999999999999999999886432 111    1223   2477889


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHHH--HHhCCCchHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHc
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTLH----LRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~~--~~~G~~lsp~~a~l~l~~L~tl~----~R~~~~~~na~~La~~L~~  426 (466)
                      ++|.+|+.|   +| +++.+++...+....  ..+....++.....+...++.+.    .+.++..++++++.+.|..
T Consensus       210 lsK~~g~~G---~~-vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~  283 (370)
T PRK05937        210 YSKALGSMG---AA-LLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSS  283 (370)
T ss_pred             chhhhhcCc---eE-EEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence            999998865   34 455566655544221  12233344544433333444332    2334555666667666654

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.74  E-value=9.4e-17  Score=172.40  Aligned_cols=144  Identities=17%  Similarity=0.271  Sum_probs=107.8

Q ss_pred             EEEeCCHH-HHHHHHHHH-----HccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-------CCHHHHHHhhcC
Q 012296          228 TVIMASGM-SASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNN  294 (466)
Q Consensus       228 ~l~~sSGs-~Ai~~al~a-----ll~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-------~Dle~Le~ai~~  294 (466)
                      .|++++|. +|+..++.+     ++.+||+|++++|.|........  +...++.+..++.       .|+++|++++++
T Consensus       163 ~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~--l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~  240 (527)
T PRK09275        163 DLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPE--LPRYDLEVVHINADEENEWQYPDSELEKLRDP  240 (527)
T ss_pred             eEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHH--HcCCCeEEEEeecCcccCCCCCHHHHHhhcCC
Confidence            56666655 899888876     68999999999999998654332  2233555544431       367899998877


Q ss_pred             CCceEEEEeCCCCCCccccc---HHHHHHHHHh--cCCEEEEeCCCCCCCc--ccccc--cCCcEEEECCccccCccccc
Q 012296          295 NNVSLFFTESPTNPFLRCVD---VKLVSDLCHK--KGAIVCIDGTFATPLN--QKALS--LGADLVLHSATKFIGGHNDV  365 (466)
Q Consensus       295 ~~tklV~lesP~NPtG~v~d---l~~Ia~la~~--~gillIvDea~a~~~~--~~~l~--~gaDivv~S~sK~lgg~gdv  365 (466)
                      + +|+|++++|+||||.+++   +++|+++|++  ++++||+||+|.....  .....  ....|++.|+||+++.+|++
T Consensus       241 ~-tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~R  319 (527)
T PRK09275        241 S-IKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWR  319 (527)
T ss_pred             C-CCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHhH
Confidence            4 999999999999999997   6778888854  5999999999876432  11111  12469999999999999865


Q ss_pred             eeEEEEeCHH
Q 012296          366 LAGSISGSGK  375 (466)
Q Consensus       366 ~gG~ivg~~e  375 (466)
                       .||++++++
T Consensus       320 -lG~i~~~~~  328 (527)
T PRK09275        320 -LGVIALHED  328 (527)
T ss_pred             -HhhhhcCch
Confidence             788888775

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.74  E-value=4.6e-16  Score=161.95  Aligned_cols=216  Identities=18%  Similarity=0.168  Sum_probs=148.2

Q ss_pred             CchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhcc---------cCC
Q 012296          208 GNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP---------KMG  274 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g--~e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l~---------~~G  274 (466)
                      .++...++++.|+++++  .+.+++++||++|+..++..+.  .++++|++.++.|++..........         ...
T Consensus        77 ~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  156 (413)
T cd00610          77 YNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLL  156 (413)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCC
Confidence            46788999999999998  5788888999999999998764  6789999999999885433221111         112


Q ss_pred             ceEEEeCCC-----------CHHHHHHhhcC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCC
Q 012296          275 ITATVIDPA-----------DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT  337 (466)
Q Consensus       275 i~v~~vd~~-----------Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~  337 (466)
                      ..+..++..           |+++|++++++  .++++|+++..+|++|.+.+    +++|.++|+++|+++|+||++..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g  236 (413)
T cd00610         157 PGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTG  236 (413)
T ss_pred             CCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence            234455554           78899998876  34788888887788898887    99999999999999999999764


Q ss_pred             CCc------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHH--HHHHHHhCCCchHHHHHHHHHhhHHHH--
Q 012296          338 PLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI--RNLHHVLGGALNPNAAYLIIRGMKTLH--  407 (466)
Q Consensus       338 ~~~------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l--~~~~~~~G~~lsp~~a~l~l~~L~tl~--  407 (466)
                      ...      ........|++  |++|++++ | ...|++++++++++.+  ...........++..+..+...++.+.  
T Consensus       237 ~g~~g~~~~~~~~~~~~d~~--t~sK~l~~-g-~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~  312 (413)
T cd00610         237 FGRTGKMFAFEHFGVEPDIV--TLGKGLGG-G-LPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEE  312 (413)
T ss_pred             CCcCcchhhHhhcCCCCCeE--EEcccccC-c-cccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence            211      11112234654  67899998 4 4578888999988886  222211112334554444444444433  


Q ss_pred             HHHHHHHHHHHHHHHHHHcC
Q 012296          408 LRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       408 ~R~~~~~~na~~La~~L~~~  427 (466)
                      ...++..++.+.+.+.|++.
T Consensus       313 ~~~~~~~~~~~~l~~~l~~~  332 (413)
T cd00610         313 GLLENAAELGEYLRERLREL  332 (413)
T ss_pred             cHHHHHHHHHHHHHHHHHHH
Confidence            34556666777777777654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PLN02672 methionine S-methyltransferase

Probab=99.74  E-value=3.9e-16  Score=177.67  Aligned_cols=212  Identities=15%  Similarity=0.116  Sum_probs=150.7

Q ss_pred             hHHHHHHHHHhhhCCC----cEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC---
Q 012296          211 TTVVVEEKMSALEGAE----STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (466)
Q Consensus       211 ~~~~Lee~LA~l~g~e----~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---  282 (466)
                      ..+.+.+++++.+|.+    +.+++++|+ +++..++.+++++||+|+++.|+|+.....    ++..|.++..++.   
T Consensus       735 lr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~----a~~~Ga~vv~Vpl~~e  810 (1082)
T PLN02672        735 PRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSA----AKFLKANFRRIPTKSS  810 (1082)
T ss_pred             HHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHH----HHHcCCEEEEEecccc
Confidence            3778999999987762    367788888 777788899999999999999999986543    3445777666643   


Q ss_pred             ----CCHHHHHHhhcCCCceEEEEeCCC-CCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc---------c-c
Q 012296          283 ----ADMEGLEAALNNNNVSLFFTESPT-NPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---------A-L  344 (466)
Q Consensus       283 ----~Dle~Le~ai~~~~tklV~lesP~-NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~---------~-l  344 (466)
                          .|+++|++++++.+.++|++++|+ ||||.+++   +++|+++|++||++||+||+|....+..         + .
T Consensus       811 ~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l  890 (1082)
T PLN02672        811 DGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSIL  890 (1082)
T ss_pred             cCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHH
Confidence                257889999865335689999997 99999986   6778888999999999999986322210         0 0


Q ss_pred             -cc------CCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhCCC-chHHHHHHHHHh--------hHHHH
Q 012296          345 -SL------GADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA-LNPNAAYLIIRG--------MKTLH  407 (466)
Q Consensus       345 -~~------gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G~~-lsp~~a~l~l~~--------L~tl~  407 (466)
                       ..      ..-+++.|+||.++.+|. +.||++++ +++++.++......+.. .+...+..++..        .+.+.
T Consensus       891 ~~~~~~sks~nVIvL~SfSKkf~lpGL-RIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~~~~l~  969 (1082)
T PLN02672        891 SRLKSSNPSFAVALLGGLSTELLSGGH-EFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVA  969 (1082)
T ss_pred             HHhccccCCceEEEEeCcHHhhccHHH-HheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHHHHHHH
Confidence             11      134788899999999985 57888885 45888887754433322 223332222211        12344


Q ss_pred             HHHHHHHHHHHHHHHHHHcC
Q 012296          408 LRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       408 ~R~~~~~~na~~La~~L~~~  427 (466)
                      ...+...++++.+.+.|+++
T Consensus       970 e~r~~Lk~rRd~L~e~L~~~  989 (1082)
T PLN02672        970 EQKKILKSRAERLKETLEAC  989 (1082)
T ss_pred             HHHHHHHHHHHHHHHHHHHC
Confidence            44556778889999999876

>PRK02769 histidine decarboxylase; Provisional

Probab=99.73  E-value=5.1e-16  Score=161.24  Aligned_cols=234  Identities=18%  Similarity=0.153  Sum_probs=161.9

Q ss_pred             CccccCCCchhHHHHHHHHHhhhCCC--c--EEEeCCHHHHHHHHHHHH--ccCCCEEEEcCCCCcchHHHHHhhcccCC
Q 012296          201 SFEYGRYGNPTTVVVEEKMSALEGAE--S--TVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMG  274 (466)
Q Consensus       201 ~~~Y~R~~np~~~~Lee~LA~l~g~e--~--~l~~sSGs~Ai~~al~al--l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~G  274 (466)
                      .+.|++......+++.+.+++++|++  +  .+++++|++++..++...  ..++++|++++..|.+....++ .+...+
T Consensus        56 ~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~-~lg~~~  134 (380)
T PRK02769         56 KSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIAR-LLRIKS  134 (380)
T ss_pred             cCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHH-HcCCCC
Confidence            34455544556667888889999973  3  366677788887666543  3578899999999999775553 233222


Q ss_pred             ceEEEeC--CCCHHHHHHhhcCC--CceEEEEeCCCCCCcccccHHHHHHHHHhcC---CEEEEeCCCCCCCcc---c--
Q 012296          275 ITATVID--PADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKG---AIVCIDGTFATPLNQ---K--  342 (466)
Q Consensus       275 i~v~~vd--~~Dle~Le~ai~~~--~tklV~lesP~NPtG~v~dl~~Ia~la~~~g---illIvDea~a~~~~~---~--  342 (466)
                      ..+...+  ..|+++|+++++++  +|.+|++..++|++|.+.|+++|+++|+++|   +++++|.+++.+...   .  
T Consensus       135 ~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~  214 (380)
T PRK02769        135 RVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPP  214 (380)
T ss_pred             ceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccc
Confidence            3333222  24899999999763  3889999999999999999999999999998   699999998874331   1  


Q ss_pred             cc--ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH--------HhCCC--chHHHHHHHHHhh--HHHHH
Q 012296          343 AL--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--------VLGGA--LNPNAAYLIIRGM--KTLHL  408 (466)
Q Consensus       343 ~l--~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--------~~G~~--lsp~~a~l~l~~L--~tl~~  408 (466)
                      ++  ..++|.++.|.||++++|.  ..|+++.+++..+.+.....        ..|..  ......|.+++.+  ..+..
T Consensus       215 ~~d~~~~vDsis~s~HK~~~~P~--g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~  292 (380)
T PRK02769        215 PFSFADGIDSIAISGHKFIGSPM--PCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQ  292 (380)
T ss_pred             cCCccCCCCEEEECCcccCCCCC--CcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHH
Confidence            11  2389999999999999665  36888887776655421111        11211  2334556555433  44667


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCeEEEeCCCC
Q 012296          409 RVQQQNSTALRMAKILEAHPKVKRVHYPGL  438 (466)
Q Consensus       409 R~~~~~~na~~La~~L~~~p~V~~V~yPgl  438 (466)
                      ++++..++++++.+.|++. ++..+..|..
T Consensus       293 ~~~~~~~la~~l~~~L~~~-g~~~~~~p~~  321 (380)
T PRK02769        293 RVQHCLDMAQYAVDRLQAN-GIPAWRNPNS  321 (380)
T ss_pred             HHHHHHHHHHHHHHHHHhC-CCEEEcCCCc
Confidence            7888899999999999874 5555555543

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.73  E-value=6.1e-16  Score=162.98  Aligned_cols=212  Identities=15%  Similarity=0.155  Sum_probs=157.7

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEeCCHH-HHHHHHHHHHcc---CCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          210 PTTVVVEEKMSALEGAE---STVIMASGM-SASTVMLLALVP---AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e---~~l~~sSGs-~Ai~~al~all~---~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ...+.+++.+++++|.+   .++++++|+ .++.+++.++-.   +||+||++...|.++..    .+...|++++++|.
T Consensus       105 ~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~k----Ai~~~G~~pv~Vd~  180 (444)
T TIGR03531       105 KLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIK----AISTAGFEPRVIET  180 (444)
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHH----HHHHcCCeEEEeee
Confidence            45678899999999987   688999999 688888776642   58999999999887764    34456777777763


Q ss_pred             --------CCHHHHHHhhcCC--CceEEEEeCCC-CCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc------cccc
Q 012296          283 --------ADMEGLEAALNNN--NVSLFFTESPT-NPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ------KALS  345 (466)
Q Consensus       283 --------~Dle~Le~ai~~~--~tklV~lesP~-NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~------~~l~  345 (466)
                              .|+++|+++|++.  ++.++++.+|+ .+.|.+.|+++|+++|++||+++|+|++|+.....      ....
T Consensus       181 ~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~  260 (444)
T TIGR03531       181 VLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIK  260 (444)
T ss_pred             eecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhcccc
Confidence                    2799999999852  25676776665 45568889999999999999999999999853321      2233


Q ss_pred             cC-CcEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCCchHHHHHHHH--HhhHHHHHHHHHHHHHHHHHH
Q 012296          346 LG-ADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLII--RGMKTLHLRVQQQNSTALRMA  421 (466)
Q Consensus       346 ~g-aDivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~lsp~~a~l~l--~~L~tl~~R~~~~~~na~~La  421 (466)
                      .| +|+++.|++|++..+++  ||+++. ++++++.++............+.+|+.+  .+.+.+...+++..++++.+.
T Consensus       261 ~Grad~vv~s~hK~l~~pg~--Gg~I~~~d~el~~~i~~~y~g~~~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~  338 (444)
T TIGR03531       261 VGRVDAVVSSTDKNFMVPVG--GAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLSLGSKGYLELLKERKEMYKYLK  338 (444)
T ss_pred             ccCCCeEEEeCccCCCCCCC--EEEEEECCHHHHHHHHHhccCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            44 69999999999998763  777766 6788887776432211222234444443  456788888999999999999


Q ss_pred             HHHHcC
Q 012296          422 KILEAH  427 (466)
Q Consensus       422 ~~L~~~  427 (466)
                      +.|++.
T Consensus       339 ~~L~~l  344 (444)
T TIGR03531       339 ELLQKL  344 (444)
T ss_pred             HHHHHH
Confidence            998875

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>TIGR01814 kynureninase kynureninase

Probab=99.73  E-value=8.9e-16  Score=160.42  Aligned_cols=159  Identities=18%  Similarity=0.247  Sum_probs=117.9

Q ss_pred             HHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHccCC---CEEEEcCCCCcchHHHHHhhcccCCceE----EEeCC
Q 012296          212 TVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAG---GHIVTTTDCYRKTRIFIETVLPKMGITA----TVIDP  282 (466)
Q Consensus       212 ~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all~~G---d~Vlv~~~~y~~t~~~~~~~l~~~Gi~v----~~vd~  282 (466)
                      .+++++ + +++|++  +.+++++++++++.++.+++++|   ++|++.+.+|++....+...++..|+++    ..++.
T Consensus        73 ~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~  150 (406)
T TIGR01814        73 DESLLK-L-RLVGAKEDEVVVMNTLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEP  150 (406)
T ss_pred             hhhhcc-c-cccCCCCCcEEEeCCchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEecc
Confidence            344444 4 788873  56666667799999998887664   3688888999986655544455667765    33432


Q ss_pred             -----CCHHHHHHhhc--CCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEEC
Q 012296          283 -----ADMEGLEAALN--NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHS  354 (466)
Q Consensus       283 -----~Dle~Le~ai~--~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S  354 (466)
                           .|++++++.++  ..+|++|++++++|.+|.+.|+++|.++||++|+++++|++++.+. ..+...+|+|+++.|
T Consensus       151 ~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s  230 (406)
T TIGR01814       151 REEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWC  230 (406)
T ss_pred             CCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEc
Confidence                 26788888774  1249999999999999999999999999999999999999987664 344456799999999


Q ss_pred             CccccCccccceeEEEEeCH
Q 012296          355 ATKFIGGHNDVLAGSISGSG  374 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~  374 (466)
                      .+||++++.  .+|+++.++
T Consensus       231 ~hK~l~g~p--G~~l~v~~~  248 (406)
T TIGR01814       231 TYKYLNAGP--GAGAFVHEK  248 (406)
T ss_pred             CccccCCCC--CeEEEEehh
Confidence            999996543  145444444

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PLN03032 serine decarboxylase; Provisional

Probab=99.73  E-value=3.3e-16  Score=162.12  Aligned_cols=233  Identities=16%  Similarity=0.110  Sum_probs=167.7

Q ss_pred             cccCCccccCCCchhHHHHHHHHHhhhCCC--c--EEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhc
Q 012296          197 KRRASFEYGRYGNPTTVVVEEKMSALEGAE--S--TVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL  270 (466)
Q Consensus       197 ~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e--~--~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l  270 (466)
                      ++...+.|++......+++.+.+++++|.+  +  .+++++||+|+..++....  .++++|+++...|.+....++   
T Consensus        53 nP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~---  129 (374)
T PLN03032         53 DPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAAR---  129 (374)
T ss_pred             CCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHH---
Confidence            444556677777788888999999999973  2  4778888899988877543  345689999999998765442   


Q ss_pred             ccCCceEEEe--C---CCCHHHHHHhhcCC--CceEEEEeCCCCCCcccccHHHHHHHHHhcC-----CEEEEeCCCCCC
Q 012296          271 PKMGITATVI--D---PADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-----AIVCIDGTFATP  338 (466)
Q Consensus       271 ~~~Gi~v~~v--d---~~Dle~Le~ai~~~--~tklV~lesP~NPtG~v~dl~~Ia~la~~~g-----illIvDea~a~~  338 (466)
                       .+|+.++.+  +   ..|+++|+++|+++  ++.+|++...+|++|.+.|+++|+++|+++|     +++++|.+++.+
T Consensus       130 -~lg~~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~  208 (374)
T PLN03032        130 -MYRMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGL  208 (374)
T ss_pred             -HcCCCCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhh
Confidence             233333333  3   23899999999763  3678888889999999999999999999996     589999998764


Q ss_pred             Cc-c------cccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH--------HhCCC--chHHHHHHHHH
Q 012296          339 LN-Q------KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--------VLGGA--LNPNAAYLIIR  401 (466)
Q Consensus       339 ~~-~------~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--------~~G~~--lsp~~a~l~l~  401 (466)
                      .. .      -....++|.++.|.||+++.|-  .+|+++.+++.++.+.....        ..|.-  ......|+.++
T Consensus       209 ~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~--g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~  286 (374)
T PLN03032        209 MMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPM--PCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLR  286 (374)
T ss_pred             hhhccCCCcccCCCcCCcEEEECcccccCCCc--CeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHH
Confidence            32 1      0123468999999999998554  36888887776655432111        11221  23456676654


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Q 012296          402 --GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYP  436 (466)
Q Consensus       402 --~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yP  436 (466)
                        |.+.+..++++..++++++.+.|++. ++..+..|
T Consensus       287 ~~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~p  322 (374)
T PLN03032        287 RKGYRGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLNE  322 (374)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEECC
Confidence              56778889999999999999999986 33334444

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.72  E-value=1.7e-15  Score=155.67  Aligned_cols=224  Identities=19%  Similarity=0.245  Sum_probs=168.6

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEE-eCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC-----
Q 012296          210 PTTVVVEEKMSALEGAE--STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-----  281 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e--~~l~-~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd-----  281 (466)
                      ....++.+.|..+++.+  ++++ .+||+.++.+++.++++|||+|++.....++.+  +.++++.+|.+++.++     
T Consensus        38 ~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R--~~~ia~~~g~~v~~~~~~wg~  115 (383)
T COG0075          38 GIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGER--FAEIAERYGAEVVVLEVEWGE  115 (383)
T ss_pred             HHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHH--HHHHHHHhCCceEEEeCCCCC
Confidence            44566777777888865  4444 479999999999999999999999888877743  4577888998888775     


Q ss_pred             CCCHHHHHHhhcCC-CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCC-CCCcccccccCCcEEEECCcccc
Q 012296          282 PADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA-TPLNQKALSLGADLVLHSATKFI  359 (466)
Q Consensus       282 ~~Dle~Le~ai~~~-~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a-~~~~~~~l~~gaDivv~S~sK~l  359 (466)
                      ..|+++++++++++ +.++|.+.+--.+||...|+++|+++|++||+++|||.+-+ ++...+..++|+|+++.+..|++
T Consensus       116 ~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l  195 (383)
T COG0075         116 AVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKAL  195 (383)
T ss_pred             CCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhc
Confidence            34899999999843 47788887777788999999999999999999999999855 45667888999999999999999


Q ss_pred             CccccceeEEEEeCHHHHHHHHHH------------HHHh---C---CCchHHHHHHHHHhhH-----HHHHHHHHHHHH
Q 012296          360 GGHNDVLAGSISGSGKLVTQIRNL------------HHVL---G---GALNPNAAYLIIRGMK-----TLHLRVQQQNST  416 (466)
Q Consensus       360 gg~gdv~gG~ivg~~eli~~l~~~------------~~~~---G---~~lsp~~a~l~l~~L~-----tl~~R~~~~~~n  416 (466)
                      +++.  ..|++..+++.++++...            ...+   +   .+.+...-+.+...|+     -++.|.++|.++
T Consensus       196 ~~PP--Gla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~  273 (383)
T COG0075         196 GAPP--GLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRL  273 (383)
T ss_pred             cCCC--ccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9987  458888887766655421            1111   1   1222222222222222     267899999999


Q ss_pred             HHHHHHHHHcC------------CCeEEEeCCC
Q 012296          417 ALRMAKILEAH------------PKVKRVHYPG  437 (466)
Q Consensus       417 a~~La~~L~~~------------p~V~~V~yPg  437 (466)
                      ++.+.+.+++.            |.|..++.|.
T Consensus       274 ~~a~r~~~~alGl~~~~~~~~~s~tvta~~~P~  306 (383)
T COG0075         274 AEALRAGLEALGLELFADPERRSPTVTAIKVPE  306 (383)
T ss_pred             HHHHHHHHHHcCCccccCcccCCCceEEEECCC
Confidence            99999999964            4566666664

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.72  E-value=1.7e-16  Score=165.13  Aligned_cols=211  Identities=21%  Similarity=0.303  Sum_probs=147.4

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC---
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  283 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---  283 (466)
                      +.....+.|+.+|+++|+++..++++|+ .++.+++++++++||+|++++++|.+.+..+    ...|+.++|+++.   
T Consensus        64 p~G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~al----il~ga~Pvyi~p~~~~  139 (417)
T PF01276_consen   64 PEGIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNAL----ILSGAIPVYIPPEDNE  139 (417)
T ss_dssp             TBTHHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHH----HHHTEEEEEEEEEE-T
T ss_pred             CccHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHH----HHcCCeEEEecCCccc
Confidence            4556888999999999999999999999 8999999999999999999999999977543    3456777666431   


Q ss_pred             -------CH-----HHHHHhhcCCC-c---eEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc-----
Q 012296          284 -------DM-----EGLEAALNNNN-V---SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK-----  342 (466)
Q Consensus       284 -------Dl-----e~Le~ai~~~~-t---klV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~-----  342 (466)
                             ++     +.|+++|++++ .   +++++.+|+ ..|.+.|+++|+++||++|++|+|||||+..+.+.     
T Consensus       140 ~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PT-Y~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~  218 (417)
T PF01276_consen  140 YGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPT-YYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRS  218 (417)
T ss_dssp             TS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS--TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTT
T ss_pred             cCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCC-CCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccc
Confidence                   34     88988887532 3   459998987 68999999999999999999999999988754433     


Q ss_pred             ccccCCc-------EEEECCccccCccccceeEEEEeCHHH---HHHHHHHHHHhCCCchHHHHH----HHHHhh-H-HH
Q 012296          343 ALSLGAD-------LVLHSATKFIGGHNDVLAGSISGSGKL---VTQIRNLHHVLGGALNPNAAY----LIIRGM-K-TL  406 (466)
Q Consensus       343 ~l~~gaD-------ivv~S~sK~lgg~gdv~gG~ivg~~el---i~~l~~~~~~~G~~lsp~~a~----l~l~~L-~-tl  406 (466)
                      ....|+|       +++.|+||.+++..  .++++..+.+.   .++++.....+..+.+...-.    .+.+.+ . .=
T Consensus       219 a~~~gad~~~~~~~~vvqS~HKtL~alt--Qts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~~~~G  296 (417)
T PF01276_consen  219 ALALGADRPNDPGIIVVQSTHKTLPALT--QTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASLDVARAQMEEEEG  296 (417)
T ss_dssp             CSSTTSS-CTSBEEEEEEEHHHHSSS-T--T-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHSHHHH
T ss_pred             hhhccCccccccceeeeechhhcccccc--cceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhh
Confidence            3467899       99999999999876  57777765542   466766655555443221111    111122 1 11


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 012296          407 HLRVQQQNSTALRMAKILE  425 (466)
Q Consensus       407 ~~R~~~~~~na~~La~~L~  425 (466)
                      ...+++..++++.+.+.|+
T Consensus       297 ~~l~~~~i~~a~~~R~~i~  315 (417)
T PF01276_consen  297 RELLEEAIELAEEFRKKIN  315 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            2344566677777777773

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.71  E-value=1.9e-15  Score=157.09  Aligned_cols=216  Identities=19%  Similarity=0.164  Sum_probs=144.0

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc----------CCCEEEEcCCCCcchHHHHHhhcc------
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP----------AGGHIVTTTDCYRKTRIFIETVLP------  271 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~----------~Gd~Vlv~~~~y~~t~~~~~~~l~------  271 (466)
                      .++..+.+++.++++.+.+.+++++||++|+..++.....          .+++|++.+..|++..........      
T Consensus        71 ~~~~~~~~~~~l~~~~~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~  150 (400)
T PTZ00125         71 YNDVLGLAEKYITDLFGYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYN  150 (400)
T ss_pred             cCHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhc
Confidence            3567889999999998888999999999999999886641          347888888888774322111100      


Q ss_pred             ---cCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCC-----
Q 012296          272 ---KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL-----  339 (466)
Q Consensus       272 ---~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~-----  339 (466)
                         ...-.+..++..|+++|+++++..++++|++|+++||+|.+.+    +++|.++|++||+++|+||++....     
T Consensus       151 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~  230 (400)
T PTZ00125        151 NFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKL  230 (400)
T ss_pred             cCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchh
Confidence               0001234455668999999997335999999999999999987    9999999999999999999975311     


Q ss_pred             -cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHH--HHHHHHHH
Q 012296          340 -NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNST  416 (466)
Q Consensus       340 -~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~~--R~~~~~~n  416 (466)
                       .........|+++  ++|.++++. ...|++++++++++.+...........++..+.++...++.+..  ..++..+.
T Consensus       231 ~~~~~~~~~pd~~~--~sK~l~~g~-~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~  307 (400)
T PTZ00125        231 LAHDHEGVKPDIVL--LGKALSGGL-YPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRL  307 (400)
T ss_pred             hHHHhcCCCCCEEE--EcccccCCC-cCcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence             0111122357776  569998753 24688899999988875432211122345555555555544321  22333344


Q ss_pred             HHHHHHHHHc
Q 012296          417 ALRMAKILEA  426 (466)
Q Consensus       417 a~~La~~L~~  426 (466)
                      .+.+.+.|++
T Consensus       308 ~~~l~~~l~~  317 (400)
T PTZ00125        308 GEVFRDGLKE  317 (400)
T ss_pred             HHHHHHHHHH
Confidence            4545555543

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.71  E-value=1.3e-15  Score=158.18  Aligned_cols=214  Identities=17%  Similarity=0.128  Sum_probs=144.6

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH----ccCCC----EEEEcCCCCcchHHHHHhhcc--c----
Q 012296          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL----VPAGG----HIVTTTDCYRKTRIFIETVLP--K----  272 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al----l~~Gd----~Vlv~~~~y~~t~~~~~~~l~--~----  272 (466)
                      +.++...+++++|+++.+.+.+++++||++|+..+++.+    ..+||    +||+.++.|++........-.  .    
T Consensus        70 ~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~  149 (389)
T PRK01278         70 YRIPEQERLAERLVENSFADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEG  149 (389)
T ss_pred             cCChHHHHHHHHHHhhCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhccc
Confidence            457888899999999987788999999999999998765    45666    899999999885433211100  0    


Q ss_pred             C---CceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccc----cHHHHHHHHHhcCCEEEEeCCCCCCCc-cc--
Q 012296          273 M---GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATPLN-QK--  342 (466)
Q Consensus       273 ~---Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~----dl~~Ia~la~~~gillIvDea~a~~~~-~~--  342 (466)
                      +   .-.+..++..|++++++++++ ++++|++|.++|++|...    .+++|.++|++||+++|+||++..... ..  
T Consensus       150 ~~~~~~~~~~~~~~d~~~l~~~l~~-~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~  228 (389)
T PRK01278        150 FGPLVPGFDQVPFGDIEALKAAITP-NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLF  228 (389)
T ss_pred             CCCCCCCceEeCCCCHHHHHHhhCC-CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcce
Confidence            0   011233445689999999987 499999998888888443    589999999999999999999763211 11  


Q ss_pred             ---ccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHHH
Q 012296          343 ---ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTA  417 (466)
Q Consensus       343 ---~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~--~R~~~~~~na  417 (466)
                         ......|+  .+++|.+++ | ...|++++++++++.+.........+.++..+.+++..++.+.  ...++..++.
T Consensus       229 ~~~~~~~~pdi--~t~sK~l~~-G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~  304 (389)
T PRK01278        229 AHEWAGVTPDI--MAVAKGIGG-G-FPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMG  304 (389)
T ss_pred             eecccCCCCCE--EEEehhccC-C-cceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence               11222454  478999984 3 4578888998888776543322222346666666655555442  1234444555


Q ss_pred             HHHHHHHH
Q 012296          418 LRMAKILE  425 (466)
Q Consensus       418 ~~La~~L~  425 (466)
                      +.+.+.|+
T Consensus       305 ~~l~~~l~  312 (389)
T PRK01278        305 LYLKQKLE  312 (389)
T ss_pred             HHHHHHHH
Confidence            55555554

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.71  E-value=1.3e-15  Score=163.48  Aligned_cols=144  Identities=17%  Similarity=0.248  Sum_probs=107.3

Q ss_pred             EEEeCCHH-HHHHHHHHH-----HccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC------------CCHHHHH
Q 012296          228 TVIMASGM-SASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------------ADMEGLE  289 (466)
Q Consensus       228 ~l~~sSGs-~Ai~~al~a-----ll~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~------------~Dle~Le  289 (466)
                      .|++++|+ +|+..++.+     ++.|||+|++++|.|........  +...|+++..++.            .|+++++
T Consensus       157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~--l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~  234 (521)
T TIGR03801       157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPE--LPRYDFEVVRIKADEMTEDGTHTWQYPDKELE  234 (521)
T ss_pred             eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHH--HhcCCcEEEEeecccccccccccCCCCHHHHH
Confidence            45555555 899888876     68999999999999998654332  2334555554432            2578899


Q ss_pred             HhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhc--CCEEEEeCCCCCCCc--cccccc--CCcEEEECCccccC
Q 012296          290 AALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKK--GAIVCIDGTFATPLN--QKALSL--GADLVLHSATKFIG  360 (466)
Q Consensus       290 ~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~--gillIvDea~a~~~~--~~~l~~--gaDivv~S~sK~lg  360 (466)
                      +++++ ++|+|++++|+||||.+++   +++|+++|++|  +++||+||+|.....  ......  ...+++.|+||+++
T Consensus       235 ~~~~~-~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg  313 (521)
T TIGR03801       235 KLRDP-SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFG  313 (521)
T ss_pred             HhcCC-CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhcc
Confidence            88876 4999999999999999997   67788889886  899999999875432  111111  24589999999999


Q ss_pred             ccccceeEEEEeCHH
Q 012296          361 GHNDVLAGSISGSGK  375 (466)
Q Consensus       361 g~gdv~gG~ivg~~e  375 (466)
                      .+|++ .|+++++++
T Consensus       314 ~~G~R-lG~i~~~~~  327 (521)
T TIGR03801       314 ATGWR-LGTIALHKD  327 (521)
T ss_pred             Cchhh-hhhhhcCch
Confidence            99865 688888754

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.71  E-value=1.7e-15  Score=157.14  Aligned_cols=216  Identities=16%  Similarity=0.186  Sum_probs=145.1

Q ss_pred             cCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCC-------CEEEEcCCCCcchHHHHHhhc--c----
Q 012296          205 GRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAG-------GHIVTTTDCYRKTRIFIETVL--P----  271 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~G-------d~Vlv~~~~y~~t~~~~~~~l--~----  271 (466)
                      ..+.++...+|+++|+++.+.++++++++|++|+.++++.++..+       ++|++.++.|++........-  .    
T Consensus        76 ~~~~~~~~~~la~~l~~~~~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~  155 (396)
T PRK02627         76 NLYYIEPQEELAEKLVELSGMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQE  155 (396)
T ss_pred             cccCCHHHHHHHHHHHhhcCCCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccc
Confidence            446689999999999999888888889999999999998765443       679999999987432211110  0    


Q ss_pred             ---cCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCc-cccc---HHHHHHHHHhcCCEEEEeCCCCCCCc----
Q 012296          272 ---KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL-RCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----  340 (466)
Q Consensus       272 ---~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG-~v~d---l~~Ia~la~~~gillIvDea~a~~~~----  340 (466)
                         ...-.+..++..|++++++++.++ +++|+++.++||+| .+.+   +++|.++|+++|+++|+||+|.....    
T Consensus       156 ~~~~~~~~~~~~~~~d~~~l~~~i~~~-~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~  234 (396)
T PRK02627        156 GFEPLVEGFIYVPFNDIEALKAAITDK-TAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKL  234 (396)
T ss_pred             cCCCCCCCceEeCCCCHHHHHHhcCCC-eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCce
Confidence               001122334555899999999764 99999999999998 4443   78999999999999999999764211    


Q ss_pred             --ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHH--HHHHHHHH
Q 012296          341 --QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNST  416 (466)
Q Consensus       341 --~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~~--R~~~~~~n  416 (466)
                        ........|++  +++|.++ +| .+.|++++++++++.+...........++..+..++..++.+..  .+++..++
T Consensus       235 ~~~~~~~~~pdi~--t~sK~~~-~G-~rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~  310 (396)
T PRK02627        235 FAYQHYGIEPDIM--TLAKGLG-GG-VPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEV  310 (396)
T ss_pred             eeehhcCCCCCEE--EEcchhh-CC-cccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence              11111224554  5889999 44 46788889998888775422222223456666665555554321  23444445


Q ss_pred             HHHHHHHHH
Q 012296          417 ALRMAKILE  425 (466)
Q Consensus       417 a~~La~~L~  425 (466)
                      .+.+.+.|+
T Consensus       311 ~~~~~~~l~  319 (396)
T PRK02627        311 GEYLRAKLR  319 (396)
T ss_pred             HHHHHHHHH
Confidence            555555444

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.70  E-value=4.7e-15  Score=148.86  Aligned_cols=218  Identities=17%  Similarity=0.181  Sum_probs=153.9

Q ss_pred             CchhHHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEE
Q 012296          208 GNPTTVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g--------~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~  279 (466)
                      +.......|+++|++.+        +++++++++..+||..++.++.+||..|++++|.|+-..    ....-.|+++++
T Consensus       101 ps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~----~~a~~~~lEVR~  176 (447)
T KOG0259|consen  101 PSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYD----TRAIYSGLEVRY  176 (447)
T ss_pred             CccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHH----HhhhhcCceeEe
Confidence            34556677888888743        234444444459999999999999999999999998643    234456899998


Q ss_pred             eCC-------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc-cc---cc-
Q 012296          280 IDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-QK---AL-  344 (466)
Q Consensus       280 vd~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~-~~---~l-  344 (466)
                      +|.       .|++.+|++++++ |.++++.||+||.|.++.   |++|+++|+++|+++|.||+|...++ .+   |+ 
T Consensus       177 ydlLPe~~weIDL~~veal~DEN-T~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg  255 (447)
T KOG0259|consen  177 YDLLPEKDWEIDLDGVEALADEN-TVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMG  255 (447)
T ss_pred             ecccCcccceechHHHHHhhccC-eeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchh
Confidence            873       3899999999986 999999999999999986   88999999999999999999765332 11   11 


Q ss_pred             cc---CCcEEEECCccccCccccceeEEEEeCH--------HHHHHHHHHHHHhCCCchHHHHHH---HHHhh-HHHHHH
Q 012296          345 SL---GADLVLHSATKFIGGHNDVLAGSISGSG--------KLVTQIRNLHHVLGGALNPNAAYL---IIRGM-KTLHLR  409 (466)
Q Consensus       345 ~~---gaDivv~S~sK~lgg~gdv~gG~ivg~~--------eli~~l~~~~~~~G~~lsp~~a~l---~l~~L-~tl~~R  409 (466)
                      .+   -.-+.+.+.+|-+--|||+ .||++..+        ..++.+..+.....+...-..+.+   +.+.- +-+..+
T Consensus       256 ~fssiVPVitlggisKrW~VPGWR-lGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~  334 (447)
T KOG0259|consen  256 KFSSIVPVITLGGISKRWIVPGWR-LGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTPEEFFDKK  334 (447)
T ss_pred             hccccCceEeecccccccccCCce-eeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhChHHHHHHH
Confidence            12   1347788999999999986 57766432        233444443333322212122211   11111 235667


Q ss_pred             HHHHHHHHHHHHHHHHcCCCeE
Q 012296          410 VQQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       410 ~~~~~~na~~La~~L~~~p~V~  431 (466)
                      +.-...|++...++|++.|.+.
T Consensus       335 ~~~lk~na~l~y~~Lk~IP~l~  356 (447)
T KOG0259|consen  335 LSFLKSNADLCYSRLKDIPCLT  356 (447)
T ss_pred             HHHHHhhHHHHHHHHhcCCCcc
Confidence            7778899999999999999876

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.70  E-value=2.1e-15  Score=155.39  Aligned_cols=218  Identities=15%  Similarity=0.129  Sum_probs=148.0

Q ss_pred             cCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc---c----CCCEEEEcCCCCcchHHHHHhh-c------
Q 012296          205 GRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV---P----AGGHIVTTTDCYRKTRIFIETV-L------  270 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all---~----~Gd~Vlv~~~~y~~t~~~~~~~-l------  270 (466)
                      .++.++...+|++++++++|.++++++.+|++|+..++..+.   .    +||+|++.++.|++........ .      
T Consensus        64 ~~~~~~~~~~l~~~la~~~g~~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~  143 (379)
T TIGR00707        64 NLYYTEPQEELAEKLVEHSGADRVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQK  143 (379)
T ss_pred             cccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhc
Confidence            456788999999999999999989999999999998887542   2    3799999999997643222111 0      


Q ss_pred             --ccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccc-c---cHHHHHHHHHhcCCEEEEeCCCCCCCcc-c-
Q 012296          271 --PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC-V---DVKLVSDLCHKKGAIVCIDGTFATPLNQ-K-  342 (466)
Q Consensus       271 --~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v-~---dl~~Ia~la~~~gillIvDea~a~~~~~-~-  342 (466)
                        ......+.+++..|++++++.++++ +++|+++.++|++|.. .   ++++|.++|+++|+++|+||+|...... . 
T Consensus       144 ~~~~~~~~~~~~~~~d~~~l~~~~~~~-~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~  222 (379)
T TIGR00707       144 GFEPLVPGFSYAPYNDIESLKKAIDDE-TAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKF  222 (379)
T ss_pred             cCCCCCCCceeeCCCCHHHHHHHhhhC-eeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchh
Confidence              0111223444555899999999874 8999998777777754 3   3889999999999999999998632111 1 


Q ss_pred             ----ccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHH
Q 012296          343 ----ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNST  416 (466)
Q Consensus       343 ----~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~--~R~~~~~~n  416 (466)
                          ......|++  +++|.++ +| .+.|++++++++++.++..........++..+..+...++.+.  ...++..++
T Consensus       223 ~~~~~~~~~~d~~--t~sK~~~-~G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~  298 (379)
T TIGR00707       223 FAYEHYGIEPDII--TLAKGLG-GG-VPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEK  298 (379)
T ss_pred             hhHHhcCCCCCEE--EEccccc-CC-cccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence                112234554  5899999 55 4578999999988887653222222345555555554444332  344556667


Q ss_pred             HHHHHHHHHcC
Q 012296          417 ALRMAKILEAH  427 (466)
Q Consensus       417 a~~La~~L~~~  427 (466)
                      ++.+.+.|++.
T Consensus       299 ~~~~~~~l~~~  309 (379)
T TIGR00707       299 GDYFKERLEEL  309 (379)
T ss_pred             HHHHHHHHHHH
Confidence            77777777653

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.70  E-value=1.6e-15  Score=160.94  Aligned_cols=207  Identities=18%  Similarity=0.146  Sum_probs=138.6

Q ss_pred             HHHHHHhhhCCC-cEE-E---eCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhc-c-----cCCceEEEeC--
Q 012296          215 VEEKMSALEGAE-STV-I---MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL-P-----KMGITATVID--  281 (466)
Q Consensus       215 Lee~LA~l~g~e-~~l-~---~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l-~-----~~Gi~v~~vd--  281 (466)
                      .++.+++++|++ +.+ +   ++||++|+.+++.+++++||+|++.+..|++......... .     ..++++..++  
T Consensus        85 ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~  164 (452)
T PTZ00094         85 CQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVN  164 (452)
T ss_pred             HHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccC
Confidence            456899999984 222 2   2689999999999999999999999999887543221110 0     1112333322  


Q ss_pred             ---CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-----ccccccCCcEEEE
Q 012296          282 ---PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLH  353 (466)
Q Consensus       282 ---~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-----~~~l~~gaDivv~  353 (466)
                         ..|+++|++++++.++++|++.  ++.+|...|+++|.++||++|+++++|++++.+..     ..++. ++|+++.
T Consensus       165 ~~g~id~~~L~~~l~~~~~~lvi~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~-~~D~l~~  241 (452)
T PTZ00094        165 EKGLIDYDKLEELAKAFRPKLIIAG--ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFP-YADVVTT  241 (452)
T ss_pred             CCCCcCHHHHHHHHHHhCCCEEEEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCC-CCcEEEc
Confidence               2389999999965447787763  33589999999999999999999999999876543     22333 7999999


Q ss_pred             CCccccCccccceeEEEEeCHHHHHHHHHHH-----HHhCCCchHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHH
Q 012296          354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALRMAKI  423 (466)
Q Consensus       354 S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~-----~~~G~~lsp~~a~l~l~~L~tl-----~~R~~~~~~na~~La~~  423 (466)
                      |+||||+|+.   ||+++.++++.+.+....     ..+.++.++.....+...++.+     +...++..++++.+.+.
T Consensus       242 S~hK~l~GP~---Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~  318 (452)
T PTZ00094        242 TTHKSLRGPR---SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAA  318 (452)
T ss_pred             CCccCCCCCC---ceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH
Confidence            9999998875   577776665544332211     1111233333333233333333     34556777899999999


Q ss_pred             HHcC
Q 012296          424 LEAH  427 (466)
Q Consensus       424 L~~~  427 (466)
                      |++.
T Consensus       319 L~~~  322 (452)
T PTZ00094        319 LEKR  322 (452)
T ss_pred             HHhC
Confidence            9775

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.69  E-value=1.7e-15  Score=161.98  Aligned_cols=212  Identities=15%  Similarity=0.185  Sum_probs=146.6

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEe-CCHHHHHHHH---HH-HHccCCC----EEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          210 PTTVVVEEKMSALEGAESTVIM-ASGMSASTVM---LL-ALVPAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e~~l~~-sSGs~Ai~~a---l~-all~~Gd----~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      ....++++.+++++|.+.+.++ ++|+.+....   +. .++.+||    +|+++++.|+.+...    +...|++++.+
T Consensus       113 el~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~----~~~~G~~vv~v  188 (481)
T PRK04366        113 ELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPAS----AAMAGFKVVEI  188 (481)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHH----HHHcCCEEEEe
Confidence            3456788999999998655544 5666443332   22 3356776    999999999886644    34568887776


Q ss_pred             CC-----CCHHHHHHhhcCCCceEEEEeCCCCCCccc-ccHHHHHHHHHhcCCEEEEeCCCCCC-C-cccccccCCcEEE
Q 012296          281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATP-L-NQKALSLGADLVL  352 (466)
Q Consensus       281 d~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v-~dl~~Ia~la~~~gillIvDea~a~~-~-~~~~l~~gaDivv  352 (466)
                      +.     .|+++|+++++++ +++|++++|+ |+|.+ .|+++|+++||++|+++++|+++... + ..++.++|+|+++
T Consensus       189 ~~~~~~~~D~e~L~~~i~~~-t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~  266 (481)
T PRK04366        189 PSNEDGLVDLEALKAAVGED-TAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVH  266 (481)
T ss_pred             ecCCCCCcCHHHHHhhcccC-CeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCEEE
Confidence            53     4789999999875 9999999998 99977 48999999999999999999997532 1 1366788999999


Q ss_pred             ECCccccCcccc---ceeEEEEeCHHHHHHHHHHH-------------------H---HhCCCchHHHHH--HHHHhhHH
Q 012296          353 HSATKFIGGHND---VLAGSISGSGKLVTQIRNLH-------------------H---VLGGALNPNAAY--LIIRGMKT  405 (466)
Q Consensus       353 ~S~sK~lgg~gd---v~gG~ivg~~eli~~l~~~~-------------------~---~~G~~lsp~~a~--l~l~~L~t  405 (466)
                      .|+||+|+++-+   -.+|++..++++..++....                   +   ..+..+....+|  +...|.+.
T Consensus       267 ~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~G  346 (481)
T PRK04366        267 LNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEG  346 (481)
T ss_pred             EechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHH
Confidence            999999875521   13578888877766552100                   0   000001112222  22334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcC
Q 012296          406 LHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       406 l~~R~~~~~~na~~La~~L~~~  427 (466)
                      +....++..++++++.+.|+++
T Consensus       347 l~~~a~~~~~~a~~l~~~L~~~  368 (481)
T PRK04366        347 LREVSEDAVLNANYLKARLKDI  368 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhh
Confidence            5555677788899999999875

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.69  E-value=2.5e-15  Score=169.87  Aligned_cols=255  Identities=14%  Similarity=0.047  Sum_probs=166.7

Q ss_pred             cccCCccccCCCchhHHHHHHHHHhhhCC--Cc-EEEeC-CHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcc
Q 012296          197 KRRASFEYGRYGNPTTVVVEEKMSALEGA--ES-TVIMA-SGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLP  271 (466)
Q Consensus       197 ~~~~~~~Y~R~~np~~~~Lee~LA~l~g~--e~-~l~~s-SGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~  271 (466)
                      +.+..+..++......++.++.+|+++|+  ++ .++|+ ++++|+++++.++ +++||+||++...|.+...+. ..++
T Consensus        65 np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~-~~a~  143 (805)
T PLN02724         65 NPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIR-EYAL  143 (805)
T ss_pred             CCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHH-HHHH
Confidence            33433444555566788999999999998  23 45555 4559999998887 688999999989998866443 5556


Q ss_pred             cCCceEEEeCCC-------------C--HHHHHHhhc---------CCCceEEEEeCCCCCCcccccHHHHHHHHHhc--
Q 012296          272 KMGITATVIDPA-------------D--MEGLEAALN---------NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--  325 (466)
Q Consensus       272 ~~Gi~v~~vd~~-------------D--le~Le~ai~---------~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~--  325 (466)
                      +.|+++.+++..             +  .++|++.++         ..++++|.+.+.+|.+|.+.|++.|.++++..  
T Consensus       144 ~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~  223 (805)
T PLN02724        144 EKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHS  223 (805)
T ss_pred             HcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhccc
Confidence            778888887643             1  144555431         12478999999999999999999775555432  


Q ss_pred             ------CCEEEEeCCCCCCC-cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHH------------
Q 012296          326 ------GAIVCIDGTFATPL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV------------  386 (466)
Q Consensus       326 ------gillIvDea~a~~~-~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~------------  386 (466)
                            ++++++|.+++.+. ..+..++++|+++.|+||++|+|.  ..|+++.++++++.+......            
T Consensus       224 ~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~--G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~  301 (805)
T PLN02724        224 NFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPT--GLGALLVRRDAAKLLKKKYFGGGTVAASIADID  301 (805)
T ss_pred             ccccCcceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCC--CceEEEEehhhhhhhcCCccCCCceEEEecccc
Confidence                  36899999976554 345556799999999999999665  358888888877665422110            


Q ss_pred             ------------hCCCchHHHHHHHHHhhHHHHH-----HHHHHHHHHHHHHHHHHcCC------CeEEEeCCCC-CCCc
Q 012296          387 ------------LGGALNPNAAYLIIRGMKTLHL-----RVQQQNSTALRMAKILEAHP------KVKRVHYPGL-KSHP  442 (466)
Q Consensus       387 ------------~G~~lsp~~a~l~l~~L~tl~~-----R~~~~~~na~~La~~L~~~p------~V~~V~yPgl-~s~p  442 (466)
                                  -.++.+......+..+++.+..     ..++..+.++++.+.|++++      .| +++.|.- ...+
T Consensus       302 ~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v-~iyg~~~~~~~~  380 (805)
T PLN02724        302 FVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVC-VLYGNHTFKLEF  380 (805)
T ss_pred             eeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEE-EEcCCCCCCCCc
Confidence                        0112222222222233433322     22344566778888888775      34 4554421 0000


Q ss_pred             hHHHHHhhcCCcceEEEEEecc
Q 012296          443 EHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       443 ~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                               ...|++|||.+++
T Consensus       381 ---------~~r~~ivsFnv~~  393 (805)
T PLN02724        381 ---------HIQGPIVTFNLKR  393 (805)
T ss_pred             ---------ccccCEEEEEEEc
Confidence                     1368999999875

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.69  E-value=4.2e-15  Score=155.51  Aligned_cols=215  Identities=19%  Similarity=0.217  Sum_probs=152.5

Q ss_pred             cccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe--
Q 012296          203 EYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI--  280 (466)
Q Consensus       203 ~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v--  280 (466)
                      .|+  ++|+..+||+.+++++|.+.++.++||+.|++++....+++||.|  +.+.|..+....   ....|..+.-+  
T Consensus        66 ~ya--g~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ah---Ie~~Gav~vDi~~  138 (450)
T TIGR02618        66 AYA--GSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYH---QEKNGATFVDIII  138 (450)
T ss_pred             hhc--CCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHH---HHhCCeEEEeeec
Confidence            466  689999999999999999999999999999887766678999977  667776554331   12234322222  


Q ss_pred             C-------------CCCHHHHHHhhcCC---CceEEEEeCCCCCC-cccc---cHHHHHHHHHhcCCEEEEeCCCCC--C
Q 012296          281 D-------------PADMEGLEAALNNN---NVSLFFTESPTNPF-LRCV---DVKLVSDLCHKKGAIVCIDGTFAT--P  338 (466)
Q Consensus       281 d-------------~~Dle~Le~ai~~~---~tklV~lesP~NPt-G~v~---dl~~Ia~la~~~gillIvDea~a~--~  338 (466)
                      +             ..|+++|+++|++.   ++++|.+++++|.. |.+.   ++++|.++|++||+.||.|.+...  .
T Consensus       139 dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA  218 (450)
T TIGR02618       139 DEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENA  218 (450)
T ss_pred             ccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhCh
Confidence            1             12799999999863   35688889999965 7884   579999999999999999998432  1


Q ss_pred             Cc---------cccc-------ccCCcEEEECCccccCccccceeEEEE-eCHHHHHHHHHHHHHhCC-----CchHHHH
Q 012296          339 LN---------QKAL-------SLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGG-----ALNPNAA  396 (466)
Q Consensus       339 ~~---------~~~l-------~~gaDivv~S~sK~lgg~gdv~gG~iv-g~~eli~~l~~~~~~~G~-----~lsp~~a  396 (466)
                      ++         ..+.       ...+|.++.|+.|..+++   +||+++ .+++++++++.++..+++     .++.-..
T Consensus       219 ~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~---~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~  295 (450)
T TIGR02618       219 YFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVN---IGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDM  295 (450)
T ss_pred             hhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCC---CceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhH
Confidence            11         1122       225899999999999988   488888 678999999988766643     2222121


Q ss_pred             HHHHHhhHHHHH--HHHHHHHHHHHHHHHHHcC
Q 012296          397 YLIIRGMKTLHL--RVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       397 ~l~l~~L~tl~~--R~~~~~~na~~La~~L~~~  427 (466)
                      ..+..+|+..-.  ..++...++++|++.|++.
T Consensus       296 ~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~~  328 (450)
T TIGR02618       296 EAMAIGIREAVDYEYIEHRVKQVRYLGDKLKAA  328 (450)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHC
Confidence            222334444322  2344456699999999887

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.69  E-value=5.4e-15  Score=155.89  Aligned_cols=217  Identities=15%  Similarity=0.011  Sum_probs=150.2

Q ss_pred             hhHHHHHHHHHhhhCCC----cEEE--eCCHHHHHHHHHHHHc----c----CC-----CEEEEcCCCCcchHHHHHhhc
Q 012296          210 PTTVVVEEKMSALEGAE----STVI--MASGMSASTVMLLALV----P----AG-----GHIVTTTDCYRKTRIFIETVL  270 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e----~~l~--~sSGs~Ai~~al~all----~----~G-----d~Vlv~~~~y~~t~~~~~~~l  270 (466)
                      ...+++++++++++|.+    +.+.  +++|++|+..++.+..    .    .|     .+|+++...|.+.....    
T Consensus        80 ~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~----  155 (431)
T TIGR01788        80 EIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFA----  155 (431)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHH----
Confidence            55667788999999975    2333  4777799988876543    1    12     37999999998866443    


Q ss_pred             ccCCceEEEeCC------CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhc------CCEEEEeCCCCCC
Q 012296          271 PKMGITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK------GAIVCIDGTFATP  338 (466)
Q Consensus       271 ~~~Gi~v~~vd~------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~------gillIvDea~a~~  338 (466)
                      ...|+++++++.      .|+++|+++|+++ +.+|.+...+|.+|.+.|+++|+++|+++      |+++++|.+++.+
T Consensus       156 ~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~~-t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~  234 (431)
T TIGR01788       156 RYFDVELREVPMDPGRYVIDPEQVVEAVDEN-TIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGF  234 (431)
T ss_pred             HHcCceeEEEecCCCceeeCHHHHHHHHhhC-CeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHH
Confidence            334666655432      2789999999885 89999999999999999999999999999      9999999998842


Q ss_pred             C--------cccccccCCcEEEECCccccCccccceeEEEEeCHH--HHHHHHHHHHHhCCC------------chHHHH
Q 012296          339 L--------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK--LVTQIRNLHHVLGGA------------LNPNAA  396 (466)
Q Consensus       339 ~--------~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~e--li~~l~~~~~~~G~~------------lsp~~a  396 (466)
                      .        ..+....++|.+..|.||++.+|-  ..|+++.++.  +...+......++..            ......
T Consensus       235 ~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~--g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~  312 (431)
T TIGR01788       235 IAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYP--GVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQ  312 (431)
T ss_pred             HHHHhCCCchhhcCCCCceEEEECchhccCCCC--CcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHH
Confidence            2        111123478999999999985554  2577765543  223221111111110            012335


Q ss_pred             HHHHHh--hHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 012296          397 YLIIRG--MKTLHLRVQQQNSTALRMAKILEAHPKVKRV  433 (466)
Q Consensus       397 ~l~l~~--L~tl~~R~~~~~~na~~La~~L~~~p~V~~V  433 (466)
                      |+.++.  ...+...+++..++++++.+.|+++|.++-+
T Consensus       313 w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~  351 (431)
T TIGR01788       313 YYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEII  351 (431)
T ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEe
Confidence            655443  3456777888899999999999999877544

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK08637 hypothetical protein; Provisional

Probab=99.67  E-value=1.8e-14  Score=149.81  Aligned_cols=176  Identities=14%  Similarity=0.149  Sum_probs=118.8

Q ss_pred             CccccCCCchhHHHHHHHHHhhhC-----C--C--cEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhc
Q 012296          201 SFEYGRYGNPTTVVVEEKMSALEG-----A--E--STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL  270 (466)
Q Consensus       201 ~~~Y~R~~np~~~~Lee~LA~l~g-----~--e--~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l  270 (466)
                      .+.|+.  ......|++.+++.+.     .  +  +.+++++|+ +++.+++..++++||+|++++|+|+.....+.   
T Consensus        37 ~~~Y~~--~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~---  111 (388)
T PRK08637         37 IFPYAP--PQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTFN---  111 (388)
T ss_pred             ccCCCC--CCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH---
Confidence            355653  2234567777766431     1  2  346677776 89999999999999999999999987654322   


Q ss_pred             ccCCceEEEeCC------CCHHHHHHhhc---CCCceEEEEeCCCCCCccccc---HHHHHHHHHh-----cCCEEEEeC
Q 012296          271 PKMGITATVIDP------ADMEGLEAALN---NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHK-----KGAIVCIDG  333 (466)
Q Consensus       271 ~~~Gi~v~~vd~------~Dle~Le~ai~---~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~-----~gillIvDe  333 (466)
                      ...|.++..++.      .|++++++.++   +...+++++++|+||||.+++   +++|+++|++     +++++|+||
T Consensus       112 ~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De  191 (388)
T PRK08637        112 TRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDD  191 (388)
T ss_pred             HhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecc
Confidence            124666655532      36899988876   223567888999999999986   5567776664     899999999


Q ss_pred             CCCCCCccc----c-c----cc-CCc--EEEECCccccCccccceeEEEEe------CHHHHHHHHH
Q 012296          334 TFATPLNQK----A-L----SL-GAD--LVLHSATKFIGGHNDVLAGSISG------SGKLVTQIRN  382 (466)
Q Consensus       334 a~a~~~~~~----~-l----~~-gaD--ivv~S~sK~lgg~gdv~gG~ivg------~~eli~~l~~  382 (466)
                      +|.......    + .    .. +..  +.+.|+||.++.+|. +.||++.      ++++++.+..
T Consensus       192 ~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGl-RlG~~~~~~~~~~~~~l~~~~~~  257 (388)
T PRK08637        192 AYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGF-RVGFITFGTKAGSSQTVKEALEK  257 (388)
T ss_pred             cchhcccCCccchhhHHHhhcccccceEEEeccccccCCCccc-ceEEEEEccccCCcHHHHHHHHH
Confidence            986532211    1 1    11 121  234599999998884 5788774      3677777654

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.67  E-value=9.7e-15  Score=146.84  Aligned_cols=222  Identities=22%  Similarity=0.320  Sum_probs=146.3

Q ss_pred             CCccccCCCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHHccCCCEEEEcC-CCCcchHHHHH------hh
Q 012296          200 ASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE------TV  269 (466)
Q Consensus       200 ~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~---~sSGs~Ai~~al~all~~Gd~Vlv~~-~~y~~t~~~~~------~~  269 (466)
                      .+|.|+   +..++.||+..|+.+|+|++++   +.||+.||.++|.++++|||+++... .-|......+-      ..
T Consensus        47 TGYGY~---D~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GS  123 (403)
T PF06838_consen   47 TGYGYD---DIGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGS  123 (403)
T ss_dssp             -TT-TT----HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSS
T ss_pred             CcCCCC---CccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCC
Confidence            356565   6789999999999999999997   47999999999999999999999654 34554444431      22


Q ss_pred             cccCCceEEEeCC-----CCHHHHHHhhcCCCceEEEEeCCC----CCCcccccHHHHHHHHHhc--CCEEEEeCCCCCC
Q 012296          270 LPKMGITATVIDP-----ADMEGLEAALNNNNVSLFFTESPT----NPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATP  338 (466)
Q Consensus       270 l~~~Gi~v~~vd~-----~Dle~Le~ai~~~~tklV~lesP~----NPtG~v~dl~~Ia~la~~~--gillIvDea~a~~  338 (466)
                      ++.+|+..+.++.     .|.+.++++++++ ||+|++.-..    -|...+.+|+++.+++|+.  +++++|||+|+.+
T Consensus       124 L~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~~-tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEF  202 (403)
T PF06838_consen  124 LKEFGIKYREVPLTEDGTIDWEAIKKALKPN-TKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEF  202 (403)
T ss_dssp             TGGGT-EEEE--B-TTSSB-HHHHHHHHHTT-EEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTT
T ss_pred             hHHhCceeEEEeecCCCCcCHHHHHHhhccC-ceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCccee
Confidence            5678898888863     3799999999975 9999997543    3445556788888888874  7999999999987


Q ss_pred             Cc-ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHH------hCCCchHHHHHHHHHhhHHHHHHHH
Q 012296          339 LN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV------LGGALNPNAAYLIIRGMKTLHLRVQ  411 (466)
Q Consensus       339 ~~-~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~------~G~~lsp~~a~l~l~~L~tl~~R~~  411 (466)
                      .. ..|...|+|++..|+-|..||.--..||+|+|+++++++.......      .|.++..  ......||=--..-+.
T Consensus       203 vE~~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RLTaPGiG~e~G~t~~~--~R~~~QGlFlAP~vV~  280 (403)
T PF06838_consen  203 VETQEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRLTAPGIGKEVGATLGT--NRLMFQGLFLAPHVVG  280 (403)
T ss_dssp             TSSS-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHHS-TTTGGGSS--TTT--HHHHHHHHHHHHHHHH
T ss_pred             ccccCccccchhheeccceeCCCCCccCcCCEEechHHHHHHHHhhhcCCccccccccCcch--HHHHHhHHhhchHHHH
Confidence            65 5688999999999999999987656799999999999987654332      2233321  2222344433334445


Q ss_pred             HHHHHHHHHHHHHHcC
Q 012296          412 QQNSTALRMAKILEAH  427 (466)
Q Consensus       412 ~~~~na~~La~~L~~~  427 (466)
                      +..+.+...+..++++
T Consensus       281 eAlKgaif~A~~fe~l  296 (403)
T PF06838_consen  281 EALKGAIFAAALFEKL  296 (403)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            5556667777777765

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PRK07505 hypothetical protein; Provisional

Probab=99.67  E-value=1.7e-14  Score=150.56  Aligned_cols=190  Identities=19%  Similarity=0.186  Sum_probs=133.1

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc----cCCC-EEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV----PAGG-HIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all----~~Gd-~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      +..+..+++++.|+++++. +.++++||++|+..++..+.    .+|+ .||+.+..|++.......... .+.++..++
T Consensus        88 ~~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~-~~~~v~~~~  165 (402)
T PRK07505         88 VRSQILKDLEEALSELFGA-SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICA-DETEVETID  165 (402)
T ss_pred             hhhHHHHHHHHHHHHHhCC-CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhh-cCCeEEEeC
Confidence            4567789999999999998 88989999999887775432    2233 355666566554322222222 345777888


Q ss_pred             CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC--------Ccccccc---cCCcE
Q 012296          282 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP--------LNQKALS---LGADL  350 (466)
Q Consensus       282 ~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~--------~~~~~l~---~gaDi  350 (466)
                      ..|+++++++++++ ++++++.+|+||+|.+.++++|.++|+++|++||+||+++..        .......   ....+
T Consensus       166 ~~d~~~l~~~~~~~-~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i  244 (402)
T PRK07505        166 HNDLDALEDICKTN-KTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTI  244 (402)
T ss_pred             CCCHHHHHHHHhcC-CCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeE
Confidence            88999999998765 788999999999999999999999999999999999997421        1111111   12347


Q ss_pred             EEECCccccCccccceeEEEE-eCHHHHHHHHHHHHH--hCCCchHHHHHHHHHhh
Q 012296          351 VLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGM  403 (466)
Q Consensus       351 vv~S~sK~lgg~gdv~gG~iv-g~~eli~~l~~~~~~--~G~~lsp~~a~l~l~~L  403 (466)
                      ++.|++|.++++|    |+++ .++++++.++.....  +++.+++..+..++..+
T Consensus       245 ~~~s~sK~~~~~G----g~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l  296 (402)
T PRK07505        245 IAASLGKAFGASG----GVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASA  296 (402)
T ss_pred             EEEechhhhhccC----eEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHH
Confidence            7889999999763    7765 578888888764332  33444444444443333

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.66  E-value=1.5e-14  Score=149.30  Aligned_cols=215  Identities=18%  Similarity=0.152  Sum_probs=145.1

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc-cCC-CEEEEcCCCCcchH-HHHHhhc-cc----C---Cc
Q 012296          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV-PAG-GHIVTTTDCYRKTR-IFIETVL-PK----M---GI  275 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all-~~G-d~Vlv~~~~y~~t~-~~~~~~l-~~----~---Gi  275 (466)
                      +.++...+|.+.+++..+.+.+++++||++|+..++.... -+| ++|++.++.|++.. ..+...- ..    +   ..
T Consensus        68 ~~~~~~~~la~~l~~~~~~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~  147 (377)
T PRK02936         68 FTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLP  147 (377)
T ss_pred             cCCHHHHHHHHHHHhcCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCC
Confidence            4467777888888887766788899999999999987432 234 67888888887632 2221100 00    0   01


Q ss_pred             eEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccc----cHHHHHHHHHhcCCEEEEeCCCCCCCc-ccc-----cc
Q 012296          276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATPLN-QKA-----LS  345 (466)
Q Consensus       276 ~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~----dl~~Ia~la~~~gillIvDea~a~~~~-~~~-----l~  345 (466)
                      .+.+++..|++++++.++++ +++|++|.+.++.|...    .+++|.++|++||+++|+||++..... ..+     ..
T Consensus       148 ~~~~~~~~d~~~l~~~~~~~-~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~  226 (377)
T PRK02936        148 GFTHVPFNDIKALKEVMNEE-VAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFG  226 (377)
T ss_pred             CceEeCCCCHHHHHHhccCC-eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhC
Confidence            23455666899999999875 99999999999888664    289999999999999999999753211 111     11


Q ss_pred             cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHH
Q 012296          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKI  423 (466)
Q Consensus       346 ~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl--~~R~~~~~~na~~La~~  423 (466)
                      ...|++  +++|.+++ | ..+|++++++++++.+...........++..+.+++..++.+  +..+++..++.+.+.+.
T Consensus       227 ~~~di~--t~sK~l~~-G-~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~  302 (377)
T PRK02936        227 LDPDIV--TVAKGLGN-G-IPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQK  302 (377)
T ss_pred             CCCcEE--EEcccccC-C-CccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            224654  68999994 4 457899999998887754322111234666666666556554  23456666777777777


Q ss_pred             HHc
Q 012296          424 LEA  426 (466)
Q Consensus       424 L~~  426 (466)
                      |++
T Consensus       303 L~~  305 (377)
T PRK02936        303 LQE  305 (377)
T ss_pred             HHH
Confidence            765

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.66  E-value=1.7e-14  Score=150.69  Aligned_cols=216  Identities=14%  Similarity=0.134  Sum_probs=143.4

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc--------cCCCEEEEcCCCCcchHHHHHhhc--------
Q 012296          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRKTRIFIETVL--------  270 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all--------~~Gd~Vlv~~~~y~~t~~~~~~~l--------  270 (466)
                      +.++...+|+++|+++.+.+.+++++||++|+..++....        ...++||..+..|++........-        
T Consensus        74 ~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~  153 (397)
T TIGR03246        74 YTNEPVLRLAKKLVDATFADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQG  153 (397)
T ss_pred             cCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccC
Confidence            4577788999999999888899999999999999988652        123568887877777432211110        


Q ss_pred             -ccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccc----cHHHHHHHHHhcCCEEEEeCCCCCC----C--
Q 012296          271 -PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATP----L--  339 (466)
Q Consensus       271 -~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~----dl~~Ia~la~~~gillIvDea~a~~----~--  339 (466)
                       ......+..++..|+++++++++++ +++|++|.++++.|...    .+++|.++|++||+++|+||++...    .  
T Consensus       154 ~~~~~~~~~~~~~~d~~~l~~~l~~~-~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~  232 (397)
T TIGR03246       154 FAPLPGGIKHAPYNDLAAAKALISDK-TCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELY  232 (397)
T ss_pred             CCCCCCceEEeCCCCHHHHHHHhccC-eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccch
Confidence             0111234456777999999999764 99999997776667543    3899999999999999999997321    1  


Q ss_pred             cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHH--HHHHHHHHHHH
Q 012296          340 NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL--HLRVQQQNSTA  417 (466)
Q Consensus       340 ~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl--~~R~~~~~~na  417 (466)
                      ........+|++  +++|.+++ | ...|++++++++++.+.......-...+|..+..++..++.+  ...+++..++.
T Consensus       233 a~~~~gv~pDi~--t~~K~lgg-G-~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~  308 (397)
T TIGR03246       233 AYMHYGVTPDIL--TSAKALGG-G-FPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRH  308 (397)
T ss_pred             hhhhcCCCCCEE--EeehhhhC-C-cceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            111112235665  68999975 3 467888889998887753221111123455444444444433  23456666677


Q ss_pred             HHHHHHHHcC
Q 012296          418 LRMAKILEAH  427 (466)
Q Consensus       418 ~~La~~L~~~  427 (466)
                      +++.+.|++.
T Consensus       309 ~~l~~~L~~l  318 (397)
T TIGR03246       309 DLFVDGLEKI  318 (397)
T ss_pred             HHHHHHHHHH
Confidence            7777777653

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.65  E-value=5e-14  Score=150.36  Aligned_cols=217  Identities=17%  Similarity=0.093  Sum_probs=141.2

Q ss_pred             CchhHHHHHH----HHHhhhCCC-cEEEe----CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHH--HHhh--cccCC
Q 012296          208 GNPTTVVVEE----KMSALEGAE-STVIM----ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIF--IETV--LPKMG  274 (466)
Q Consensus       208 ~np~~~~Lee----~LA~l~g~e-~~l~~----sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~--~~~~--l~~~G  274 (466)
                      ++...+++|+    +..++++++ ..+++    .||+.|+..++.+++++||+|+..+...++....  ....  +...+
T Consensus        74 G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~  153 (475)
T PLN03226         74 GNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATS  153 (475)
T ss_pred             CChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccce
Confidence            4567777776    455567764 44444    8999999999999999999999866433332211  1111  11122


Q ss_pred             ceEE--Ee--C----CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-----c
Q 012296          275 ITAT--VI--D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----Q  341 (466)
Q Consensus       275 i~v~--~v--d----~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-----~  341 (466)
                      ..+.  .+  +    ..|+++|++.+...++++|++. .++ ++...|+++|.++|+++|+++++|+++..++.     .
T Consensus       154 ~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~-~S~-~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~  231 (475)
T PLN03226        154 IYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAG-ASA-YPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAA  231 (475)
T ss_pred             EEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEEe-cCc-CCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCC
Confidence            2211  11  1    1289999998875457877762 333 67888999999999999999999999766543     1


Q ss_pred             cccccCCcEEEECCccccCccccceeEEEEeCHHHH-----------HH---HHHH-HHHhCCCchHHHHHHHHHhhHHH
Q 012296          342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV-----------TQ---IRNL-HHVLGGALNPNAAYLIIRGMKTL  406 (466)
Q Consensus       342 ~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli-----------~~---l~~~-~~~~G~~lsp~~a~l~l~~L~tl  406 (466)
                      .++. ++|+++.|+||+|.|+.   ||+++++++++           +.   +... ...+.+++++.....+..+++.+
T Consensus       232 ~p~~-~~Div~~t~hK~L~GP~---Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i  307 (475)
T PLN03226        232 SPFE-YCDVVTTTTHKSLRGPR---GGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQA  307 (475)
T ss_pred             CCCC-CCeEEEecCcccccCCC---ceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHH
Confidence            2333 69999999999998774   68888887544           21   1111 11233344444433333344433


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHcCCCeE
Q 012296          407 -----HLRVQQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       407 -----~~R~~~~~~na~~La~~L~~~p~V~  431 (466)
                           +.+.++..+|++.|++.|++. ++.
T Consensus       308 ~~~~~~~~~~~~~~na~~L~~~L~~~-G~~  336 (475)
T PLN03226        308 MTPEFKAYQKQVKANAAALANRLMSK-GYK  336 (475)
T ss_pred             hCcCHHHHHHHHHHHHHHHHHHHHhC-CCE
Confidence                 345778889999999999884 443

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.64  E-value=6.4e-14  Score=146.24  Aligned_cols=216  Identities=19%  Similarity=0.187  Sum_probs=147.5

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc---------cC-CCEEEEcCCCCcch-HHHHHhhc-----c
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV---------PA-GGHIVTTTDCYRKT-RIFIETVL-----P  271 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all---------~~-Gd~Vlv~~~~y~~t-~~~~~~~l-----~  271 (466)
                      ..+...+|+++|+++++.+.+++++||++|+..++....         .+ .+.|+.....|++. ...+...-     .
T Consensus        77 ~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~  156 (401)
T TIGR01885        77 YNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRT  156 (401)
T ss_pred             CCHHHHHHHHHHHhhcCCCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCccccc
Confidence            567788999999999988899999999999999988642         12 35788888888763 33222100     0


Q ss_pred             cCC---ceEEEeCCCCHHHHHHhhcC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCc--
Q 012296          272 KMG---ITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN--  340 (466)
Q Consensus       272 ~~G---i~v~~vd~~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~~--  340 (466)
                      .++   ..+..++..|+++|+++++.  .++.+|++|.+.+++|.+.+    +++|.++|++||+++|+||++.. +.  
T Consensus       157 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g-~g~~  235 (401)
T TIGR01885       157 NFGPYVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTG-LGRT  235 (401)
T ss_pred             ccCCCCCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC-CCcc
Confidence            112   12344566789999998852  24789999999999999887    99999999999999999999643 21  


Q ss_pred             -----ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHH--HHHHH
Q 012296          341 -----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQ  413 (466)
Q Consensus       341 -----~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~~--R~~~~  413 (466)
                           ........|+++  ++|.+++++. ..|++++++++++.++......-...+|..+..++..|+.+..  ..++.
T Consensus       236 G~~~~~~~~~~~~di~~--~gK~l~~g~~-~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~  312 (401)
T TIGR01885       236 GKLLCVDHENVKPDIVL--LGKALSGGVY-PVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENA  312 (401)
T ss_pred             chhhHHhhcCCCCCEEE--eeccccCCCC-CcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Confidence                 111233568776  5699987543 4678888899888775421111112245555555555555432  23455


Q ss_pred             HHHHHHHHHHHHcC
Q 012296          414 NSTALRMAKILEAH  427 (466)
Q Consensus       414 ~~na~~La~~L~~~  427 (466)
                      .+..+.+.+.|+++
T Consensus       313 ~~~~~~~~~~L~~l  326 (401)
T TIGR01885       313 EKLGEIFRDQLKKL  326 (401)
T ss_pred             HHHHHHHHHHHHhc
Confidence            66677777888776

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.63  E-value=1.9e-14  Score=152.52  Aligned_cols=214  Identities=18%  Similarity=0.170  Sum_probs=149.2

Q ss_pred             CchhHHHH----HHHHHhhhCCCc-EEEeCCHHHHHHHHHHHHccC-------------------------------CCE
Q 012296          208 GNPTTVVV----EEKMSALEGAES-TVIMASGMSASTVMLLALVPA-------------------------------GGH  251 (466)
Q Consensus       208 ~np~~~~L----ee~LA~l~g~e~-~l~~sSGs~Ai~~al~all~~-------------------------------Gd~  251 (466)
                      +....+++    .++..+++|++. .+=.-||+.|+.+++.++++|                               ||+
T Consensus        89 g~~~~d~ie~l~~~ra~~lf~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~  168 (493)
T PRK13580         89 GCQNVDTVEWEAAEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQR  168 (493)
T ss_pred             CCchHHHHHHHHHHHHHHHhCCCcccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCE
Confidence            44455444    455666889865 444579999999999999976                               899


Q ss_pred             EEEcCCCCcchHHH------HHhh--cccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHH
Q 012296          252 IVTTTDCYRKTRIF------IETV--LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH  323 (466)
Q Consensus       252 Vlv~~~~y~~t~~~------~~~~--l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~  323 (466)
                      |+..+..+++....      ....  ...+|+... -...|.+++++.+++. +++|++...+|. +...|+++|.++|+
T Consensus       169 i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~-~g~iD~d~l~~~~~~~-~plvii~g~S~~-~~~~dl~~i~eia~  245 (493)
T PRK13580        169 LLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPD-TGLLDYDEIAALAREF-KPLILVAGYSAY-PRRVNFAKLREIAD  245 (493)
T ss_pred             EEeecCCCCCeeecCcccchhhheeeeEecccCcc-cCccCHHHHHHHHhhc-CCEEEEeCcccc-CCCcCHHHHHHHHH
Confidence            99888777663211      0000  111222100 0124899999999886 667777788777 55889999999999


Q ss_pred             hcCCEEEEeCCCCCCCcc--------cccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH-HHhCCCchHH
Q 012296          324 KKGAIVCIDGTFATPLNQ--------KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HVLGGALNPN  394 (466)
Q Consensus       324 ~~gillIvDea~a~~~~~--------~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~-~~~G~~lsp~  394 (466)
                      ++|+++++|+++..++..        .+. .++|+++.|+||+|.|+.   ||++++++++++.+.... ..+|+.+.+.
T Consensus       246 ~~gA~L~VD~AH~~Gligg~~~~~~~~~~-~~~D~vtgT~hKaL~GP~---GG~I~~~~~l~~~L~~a~P~i~gg~l~p~  321 (493)
T PRK13580        246 EVGAVLMVDMAHFAGLVAGKVFTGDEDPV-PHADIVTTTTHKTLRGPR---GGLVLAKKEYADAVDKGCPLVLGGPLPHV  321 (493)
T ss_pred             HcCCEEEEECchhhceeccccchhhcCCC-CCCcEEEeCChhhccCCC---eEEEEecHHHHHHHhhCCCcccCCCccHH
Confidence            999999999997665431        222 368999999999997763   799999999988885433 3456666665


Q ss_pred             HHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHcCC
Q 012296          395 AAYLIIRGMK----TLHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       395 ~a~l~l~~L~----tl~~R~~~~~~na~~La~~L~~~p  428 (466)
                      .+..+....+    ....+.++..+|++.|++.|++..
T Consensus       322 iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~G  359 (493)
T PRK13580        322 MAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKRG  359 (493)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4444332222    124477888999999999998764

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.63  E-value=6.4e-14  Score=146.37  Aligned_cols=214  Identities=14%  Similarity=0.176  Sum_probs=145.1

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc--------cCCCEEEEcCCCCcchHH-HHH--------hhc
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRKTRI-FIE--------TVL  270 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all--------~~Gd~Vlv~~~~y~~t~~-~~~--------~~l  270 (466)
                      .++...+|+++|+++.+.+.+++++||++|+..++....        ...+.|+..+..|++... .+.        ..+
T Consensus        80 ~~~~~~~l~~~l~~~~~~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~  159 (403)
T PRK05093         80 TNEPALRLAKKLIDATFAERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGF  159 (403)
T ss_pred             CCHHHHHHHHHHHhhCCCCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcC
Confidence            456677999999999877899999999999999887442        123568877877777432 111        001


Q ss_pred             ccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccc-c----HHHHHHHHHhcCCEEEEeCCCCCCCc-ccc-
Q 012296          271 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV-D----VKLVSDLCHKKGAIVCIDGTFATPLN-QKA-  343 (466)
Q Consensus       271 ~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~-d----l~~Ia~la~~~gillIvDea~a~~~~-~~~-  343 (466)
                      ......+..++..|++++++.+.++ +++|++| |.|++|.+. +    +++|.++|++||+++|+||+|..... ... 
T Consensus       160 ~~~~~~~~~~~~~d~~~l~~~l~~~-~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~  237 (403)
T PRK05093        160 GPKPADITHVPFNDLAAVKAVIDDH-TCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLF  237 (403)
T ss_pred             CCCCCCcEEeCCCCHHHHHHHhcCC-eEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch
Confidence            1112245566777999999999764 9999998 667776553 2    89999999999999999999764211 111 


Q ss_pred             ----cccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHHH
Q 012296          344 ----LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTA  417 (466)
Q Consensus       344 ----l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~--~R~~~~~~na  417 (466)
                          .....|  +.|++|.+++ | .+.|++++++++++.+...........++..++.++..|+.+.  ...++..++.
T Consensus       238 ~~~~~~~~pd--i~s~sK~l~~-G-~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~  313 (403)
T PRK05093        238 AYMHYGVTPD--ILTSAKALGG-G-FPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARR  313 (403)
T ss_pred             hhhhcCCCCC--EEEecccccC-C-cceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence                112245  4578999994 4 4689999999998887642221222345555555555454432  3456667778


Q ss_pred             HHHHHHHHcC
Q 012296          418 LRMAKILEAH  427 (466)
Q Consensus       418 ~~La~~L~~~  427 (466)
                      +.+.+.|+++
T Consensus       314 ~~l~~~L~~~  323 (403)
T PRK05093        314 QRFVDGLQKI  323 (403)
T ss_pred             HHHHHHHHHH
Confidence            8888888764

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.63  E-value=2.6e-14  Score=146.27  Aligned_cols=242  Identities=17%  Similarity=0.216  Sum_probs=163.9

Q ss_pred             cccCCCchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHHccC-----CCEEEEcCCCCcc-hHHH--------HH
Q 012296          203 EYGRYGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALVPA-----GGHIVTTTDCYRK-TRIF--------IE  267 (466)
Q Consensus       203 ~Y~R~~np~~~~Lee~LA~l~g-~e~~l~~sSGs~Ai~~al~all~~-----Gd~Vlv~~~~y~~-t~~~--------~~  267 (466)
                      .-.-|.++...+|.++|+++.+ .+.+++++||++|+..++....+-     ..+||.....|++ |...        ++
T Consensus        77 ~sn~~~~~~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~  156 (404)
T COG4992          77 VSNLFYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYR  156 (404)
T ss_pred             cccccCChHHHHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhc
Confidence            3344668999999999999996 889999999999999999754322     2378888888887 2111        11


Q ss_pred             hhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC-----
Q 012296          268 TVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-----  338 (466)
Q Consensus       268 ~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~-----  338 (466)
                      +.+...--.+++++..|+++++++|+++ |.+|++|......|.+.+    ++++.++|++||+++|.||++...     
T Consensus       157 ~~F~Pl~~g~~~vpfnDi~al~~ai~~~-taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk  235 (404)
T COG4992         157 KGFGPLLPGFRHVPFNDIEALEAAIDED-TAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGK  235 (404)
T ss_pred             cCCCCCCCCceecCCCCHHHHHHHhccC-eEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccch
Confidence            1111111245667788999999999995 999999999988888764    789999999999999999996531     


Q ss_pred             -CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHH--HHHHhCCCchHHHHHHHHHhhHHHH--HHHHHH
Q 012296          339 -LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQ  413 (466)
Q Consensus       339 -~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~--~~~~~G~~lsp~~a~l~l~~L~tl~--~R~~~~  413 (466)
                       +...-...-.||++  +.|.+||+  +..|+++.++++.+.+..  +...+|+  +|+++..+...++.+.  .-+++.
T Consensus       236 ~fA~e~~gV~PDI~t--laK~LgGG--~PigA~la~~~~~~~~~~G~HgSTfGG--NpLacAv~~a~l~~l~~e~ll~~v  309 (404)
T COG4992         236 LFAYEHYGVEPDILT--LAKALGGG--FPIGAMLATEEIASAFTPGDHGSTFGG--NPLACAVALAVLEVLLEEGLLENV  309 (404)
T ss_pred             HHHHHHhCCCCCEEE--eeccccCC--ccceeeEEchhhhhcCCCCcccCCCCc--CHHHHHHHHHHHHHHcchhHHHHH
Confidence             11222233457776  78999987  456777777555554332  2223444  6777777666666553  233444


Q ss_pred             HHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEeccC
Q 012296          414 NSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLME  465 (466)
Q Consensus       414 ~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~~  465 (466)
                      .+..+.+.+.|+++.    ..||-          -+..+|.|.|+.++++.+
T Consensus       310 ~~~g~~~~~~L~~l~----~~~~~----------v~~vRG~GLmiGiel~~~  347 (404)
T COG4992         310 REKGEYLLQRLRELK----RRYPL----------VKEVRGRGLMIGIELKEP  347 (404)
T ss_pred             HHHHHHHHHHHHHHh----hcCCc----------eeeeecceeEEEEEecCc
Confidence            445555555555431    12221          133478999999998764

>PRK15029 arginine decarboxylase; Provisional

Probab=99.63  E-value=2.1e-14  Score=159.13  Aligned_cols=214  Identities=14%  Similarity=0.103  Sum_probs=153.5

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC---
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  283 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---  283 (466)
                      +.....+.++..|+++|+++..++++|+ .++.+++++++++||+|++++++|.+.+..    +...|+..+|+.+.   
T Consensus       203 p~G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~a----l~L~ga~Pvyl~P~~~~  278 (755)
T PRK15029        203 HTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQG----LILTGAKPVYMVPSRNR  278 (755)
T ss_pred             CCcHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHH----HHHcCCeEEEecccccc
Confidence            4455788999999999999999999999 889999999999999999999999987743    34457777776421   


Q ss_pred             -------C-----HHHHHHhhcCCC-ce--------EEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc--
Q 012296          284 -------D-----MEGLEAALNNNN-VS--------LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN--  340 (466)
Q Consensus       284 -------D-----le~Le~ai~~~~-tk--------lV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~--  340 (466)
                             +     ++.++++|+.++ ++        ++++.+|+ ..|.+.|+++|+++||++|++|++||||+..+.  
T Consensus       279 ~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PT-Y~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~  357 (755)
T PRK15029        279 YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFN  357 (755)
T ss_pred             cCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCC-CcceeeCHHHHHHHHHhcCCeEEEECccccccccC
Confidence                   3     788988885431 34        89998987 679999999999999999999999999876331  


Q ss_pred             ----c-ccc-----c-cCCc-EEEECCccccCccccceeEEEEeCHH--H--HHHHHHHHHHhCCCchHHHHHH----HH
Q 012296          341 ----Q-KAL-----S-LGAD-LVLHSATKFIGGHNDVLAGSISGSGK--L--VTQIRNLHHVLGGALNPNAAYL----II  400 (466)
Q Consensus       341 ----~-~~l-----~-~gaD-ivv~S~sK~lgg~gdv~gG~ivg~~e--l--i~~l~~~~~~~G~~lsp~~a~l----~l  400 (466)
                          . .++     . .|+| +++.|+||.+++..  .+.++..+..  .  .++++.....+..+.+...-.+    +.
T Consensus       358 ~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alT--QaS~LHv~~~~~~id~~r~~~~l~~~qSTSPSY~LmASLD~ar  435 (755)
T PRK15029        358 PIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALS--QASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAV  435 (755)
T ss_pred             ccccccccccccccccCCCceEEEEchhhcccchh--hhhhheeCCCccccCHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence                1 233     3 6898 99999999999876  5677765433  2  2466665555554432221111    11


Q ss_pred             HhhHH--HHHHHHHHHHHHHHHHHHHHcCC
Q 012296          401 RGMKT--LHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       401 ~~L~t--l~~R~~~~~~na~~La~~L~~~p  428 (466)
                      +.++.  -...+++..+.+..+.+.|++.+
T Consensus       436 ~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~  465 (755)
T PRK15029        436 SMMDGNSGLSLTQEVIDEAVDFRQAMARLY  465 (755)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            11221  12234555666777777776654

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.62  E-value=2.1e-14  Score=163.10  Aligned_cols=215  Identities=18%  Similarity=0.184  Sum_probs=158.1

Q ss_pred             HHHHHHHHHhhhCCCcEEEeCCHH----HHHHHHHHHHccC-CC----EEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          212 TVVVEEKMSALEGAESTVIMASGM----SASTVMLLALVPA-GG----HIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       212 ~~~Lee~LA~l~g~e~~l~~sSGs----~Ai~~al~all~~-Gd----~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ..++++.|++++|.+.+++..+.+    .++.+++.++.++ ||    +||++...|+++...+.    ..|+++++++.
T Consensus       570 ~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~----~~G~~vv~v~~  645 (993)
T PLN02414        570 FEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAA----MCGMKIVVVGT  645 (993)
T ss_pred             HHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHH----HCCCEEEEecc
Confidence            467899999999997777776666    6899999999876 88    89999999998775443    36888888864


Q ss_pred             -----CCHHHHHHhhcC--CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC--cccccccCCcEEEE
Q 012296          283 -----ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL--NQKALSLGADLVLH  353 (466)
Q Consensus       283 -----~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~--~~~~l~~gaDivv~  353 (466)
                           .|+++|++++++  .++++|++.+|+|.+|...|+++|+++||++|+++++|.++..+.  ...+.++|+|+++.
T Consensus       646 d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~  725 (993)
T PLN02414        646 DAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHL  725 (993)
T ss_pred             CCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCEEEe
Confidence                 389999999985  248999999999999999999999999999999999999975433  35677899999999


Q ss_pred             CCccccCcccc---ceeEEEEeCHHHHHHHHHH------------H-HHhCCC-chHH---------HHHHHHHhhHHHH
Q 012296          354 SATKFIGGHND---VLAGSISGSGKLVTQIRNL------------H-HVLGGA-LNPN---------AAYLIIRGMKTLH  407 (466)
Q Consensus       354 S~sK~lgg~gd---v~gG~ivg~~eli~~l~~~------------~-~~~G~~-lsp~---------~a~l~l~~L~tl~  407 (466)
                      |.||+|++|..   -..|++..++++...+-..            . ...|.. ..++         .+|+...|.+.+.
T Consensus       726 s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~  805 (993)
T PLN02414        726 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLT  805 (993)
T ss_pred             cCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHH
Confidence            99998774421   1258888888766544321            1 011221 1112         1223333444454


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCe
Q 012296          408 LRVQQQNSTALRMAKILEAHPKV  430 (466)
Q Consensus       408 ~R~~~~~~na~~La~~L~~~p~V  430 (466)
                      .--++...|+.++++.|++...+
T Consensus       806 ~~a~~a~~nAnYl~~rL~~~~~~  828 (993)
T PLN02414        806 DASKIAILNANYMAKRLEGHYPV  828 (993)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCc
Confidence            44455677899999999876443

>PLN02271 serine hydroxymethyltransferase

Probab=99.62  E-value=5e-14  Score=150.21  Aligned_cols=215  Identities=20%  Similarity=0.164  Sum_probs=147.5

Q ss_pred             CchhHHHHH----HHHHhhhCCCc-----EEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHH-----hhcccC
Q 012296          208 GNPTTVVVE----EKMSALEGAES-----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIE-----TVLPKM  273 (466)
Q Consensus       208 ~np~~~~Le----e~LA~l~g~e~-----~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~-----~~l~~~  273 (466)
                      ++...+++|    ++..+++|++.     .+-.-||+.|+.+++.++++|||+|+..+..|++......     ..+...
T Consensus       188 G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~s  267 (586)
T PLN02271        188 GNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGA  267 (586)
T ss_pred             CChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccc
Confidence            556666554    45556778543     4555699999999999999999999999999988543321     112334


Q ss_pred             CceEEEeC--------CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-----
Q 012296          274 GITATVID--------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----  340 (466)
Q Consensus       274 Gi~v~~vd--------~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-----  340 (466)
                      |+.+..++        ..|.++|++.....++|+|++....+|  ...|+++|.++|+++|++|++|.++..++.     
T Consensus       268 G~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~  345 (586)
T PLN02271        268 SIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKEC  345 (586)
T ss_pred             cceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcC
Confidence            54433332        238999998444446999999877777  778999999999999999999999765543     


Q ss_pred             ccccccCCcEEEECCccccCccccceeEEEEeCHH--------------------HHHHHHHHH--HHhCCCchHHHHHH
Q 012296          341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK--------------------LVTQIRNLH--HVLGGALNPNAAYL  398 (466)
Q Consensus       341 ~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~e--------------------li~~l~~~~--~~~G~~lsp~~a~l  398 (466)
                      ..|+. ++|+++.|+||+|.||.   ||+|+.+++                    +.+++....  ...|+..+...|.+
T Consensus       346 ~sP~~-~aDvvt~TTHKtLrGPr---GG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAal  421 (586)
T PLN02271        346 VNPFD-YCDIVTSTTHKSLRGPR---GGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAAL  421 (586)
T ss_pred             CCCCc-CCcEEEeCCcccCCCCC---ceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHH
Confidence            34555 49999999999999994   677776653                    334443322  12233222222222


Q ss_pred             H--HH--hhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012296          399 I--IR--GMKTLHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       399 ~--l~--~L~tl~~R~~~~~~na~~La~~L~~~p  428 (466)
                      +  +.  ....+....++..+|++.|++.|.+..
T Consensus       422 Avalkea~~~efk~Ya~QVv~NAkaLA~~L~~~G  455 (586)
T PLN02271        422 AIALKQVATPEYKAYMQQVKKNAQALASALLRRK  455 (586)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            1  11  122456677888999999999998873

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.61  E-value=1.2e-13  Score=144.66  Aligned_cols=215  Identities=14%  Similarity=0.147  Sum_probs=143.9

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc--------cCCCEEEEcCCCCcchHHHHHhhccc------
Q 012296          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRKTRIFIETVLPK------  272 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all--------~~Gd~Vlv~~~~y~~t~~~~~~~l~~------  272 (466)
                      +.++...+|+++|+++.+.+.+++++||++|+..++....        ....+|+..+..|++........-..      
T Consensus        78 ~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~  157 (406)
T PRK12381         78 YTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQD  157 (406)
T ss_pred             cCCHHHHHHHHHHHhhCCCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccC
Confidence            4577788999999999887889999999999999987642        13467888888888843221111000      


Q ss_pred             C---CceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccc-----cHHHHHHHHHhcCCEEEEeCCCCCC-Cc---
Q 012296          273 M---GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV-----DVKLVSDLCHKKGAIVCIDGTFATP-LN---  340 (466)
Q Consensus       273 ~---Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~-----dl~~Ia~la~~~gillIvDea~a~~-~~---  340 (466)
                      +   .-.+..++..|++++++.++++ +++|++| |.|++|-+.     .+++|.++|++||+++|+||++... ..   
T Consensus       158 ~~~~~~~~~~~~~~d~~~l~~~l~~~-~aaviiE-Pv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~  235 (406)
T PRK12381        158 FAPLPPDIRHAAYNDLNSASALIDDQ-TCAVIVE-PIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGEL  235 (406)
T ss_pred             CCCCCCCeeEeCCCCHHHHHHhccCC-eeEEEEe-CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcch
Confidence            0   0123445667899999999764 8999996 778887543     4789999999999999999997421 11   


Q ss_pred             --ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHH
Q 012296          341 --QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNST  416 (466)
Q Consensus       341 --~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~--~R~~~~~~n  416 (466)
                        ........|+  .+++|.+++ | .+.|++++++++++.+...........+|..+..++..++.+.  ..+++..++
T Consensus       236 ~~~~~~~v~pDi--~t~sK~l~g-G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~  311 (406)
T PRK12381        236 YAYMHYGVTPDV--LTTAKALGG-G-FPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQR  311 (406)
T ss_pred             hhhHhhCCCCCE--EEehhhhhC-C-CceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence              1111223565  478999985 3 4678888999988877542221112335665555555444442  234556666


Q ss_pred             HHHHHHHHHcC
Q 012296          417 ALRMAKILEAH  427 (466)
Q Consensus       417 a~~La~~L~~~  427 (466)
                      .+.+.+.|++.
T Consensus       312 ~~~l~~~L~~l  322 (406)
T PRK12381        312 HDWFVERLNTI  322 (406)
T ss_pred             HHHHHHHHHHH
Confidence            77777777653

>PLN02624 ornithine-delta-aminotransferase

Probab=99.61  E-value=1.3e-13  Score=147.32  Aligned_cols=199  Identities=16%  Similarity=0.182  Sum_probs=134.3

Q ss_pred             cCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc---------CCC-EEEEcCCCCcchH-HHHHhh----
Q 012296          205 GRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP---------AGG-HIVTTTDCYRKTR-IFIETV----  269 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~---------~Gd-~Vlv~~~~y~~t~-~~~~~~----  269 (466)
                      .++.++...+|+++|+++.+.+.+++++||++|+..++.....         +++ .|+.....|++.. ..+...    
T Consensus       112 ~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~  191 (474)
T PLN02624        112 RAFYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNE  191 (474)
T ss_pred             cccCCHHHHHHHHHHHhhcCCCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCcc
Confidence            3466788899999999999888999999999999998864332         133 5777777787732 111100    


Q ss_pred             -cc---cCCceEEEeCCCCHHHHHHhhcC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCC
Q 012296          270 -LP---KMGITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL  339 (466)
Q Consensus       270 -l~---~~Gi~v~~vd~~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~  339 (466)
                       -.   ...-.+.+++..|++.+++.++.  .++++|++|.++|++|.+.+    +++|.++|++||+++|+||++....
T Consensus       192 ~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~G  271 (474)
T PLN02624        192 ATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLA  271 (474)
T ss_pred             ccccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcC
Confidence             00   00112345666789999998853  24899999999999999887    9999999999999999999976311


Q ss_pred             ------cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHH
Q 012296          340 ------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL  406 (466)
Q Consensus       340 ------~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl  406 (466)
                            .........|+++  ++|.+++++. ..|+++++++++..+.......-...++..+.+++..++.+
T Consensus       272 rtG~~~a~~~~~i~pDiv~--lsK~lggG~~-pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l  341 (474)
T PLN02624        272 RTGKMLACDWEEVRPDVVI--LGKALGGGVI-PVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVV  341 (474)
T ss_pred             cCcchhhHHhcCCCCCEEE--ecccccCCCC-cceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHH
Confidence                  1111223457776  5799997643 46778888888776643221111123555555555555544

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.61  E-value=1.3e-13  Score=144.91  Aligned_cols=222  Identities=16%  Similarity=0.194  Sum_probs=142.0

Q ss_pred             CCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhh-------c------
Q 012296          207 YGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV-------L------  270 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~-e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~-------l------  270 (466)
                      +.++...+|.++|+++... +.+++++||++|+..+++...  ...++||..++.|++....+...       .      
T Consensus        85 ~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~  164 (423)
T TIGR00713        85 APTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSP  164 (423)
T ss_pred             CCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCC
Confidence            3567788999999998764 578888999999999887532  35689999999999843222110       0      


Q ss_pred             ---ccCCceEEEeCCCCHHHHHHhhcC--CCceEEEEe-CCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCc
Q 012296          271 ---PKMGITATVIDPADMEGLEAALNN--NNVSLFFTE-SPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN  340 (466)
Q Consensus       271 ---~~~Gi~v~~vd~~Dle~Le~ai~~--~~tklV~le-sP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~~  340 (466)
                         ...+..+..++..|+++++++++.  .++++|++| .++| +|.+.+    +++|.++|++||+++|+||++.....
T Consensus       165 ~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~  243 (423)
T TIGR00713       165 GVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRV  243 (423)
T ss_pred             CCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccccc
Confidence               000111233455689999998862  248899998 6666 787776    78999999999999999999753211


Q ss_pred             -----ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH-HhC--CCchHHHHHHHHHhhHHHHH--HH
Q 012296          341 -----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLG--GALNPNAAYLIIRGMKTLHL--RV  410 (466)
Q Consensus       341 -----~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~-~~G--~~lsp~~a~l~l~~L~tl~~--R~  410 (466)
                           ........|++  +++|.+++ | ...|++++++++++.+..... ..+  ...++..+..++..++.+..  .+
T Consensus       244 g~~~~~~~~~~~pDi~--t~sK~l~~-G-~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~  319 (423)
T TIGR00713       244 ALGGAQEYFGVEPDLT--TLGKIIGG-G-LPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVY  319 (423)
T ss_pred             CcchhHHHhCCCcchh--hhhhhhcC-C-CceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHH
Confidence                 11122235654  69999984 4 467999999999888753211 111  13456666555555554432  22


Q ss_pred             HHHHHH----HHHHHHHHHcCCCeEEE
Q 012296          411 QQQNST----ALRMAKILEAHPKVKRV  433 (466)
Q Consensus       411 ~~~~~n----a~~La~~L~~~p~V~~V  433 (466)
                      ++..+.    .+.+.+.+++++.+..+
T Consensus       320 ~~~~~~~~~~~~~l~~~~~~~~~~~~v  346 (423)
T TIGR00713       320 TELDELAKRLAEGLSEVLEDTGIPHTV  346 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            333333    33444555566554433

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.59  E-value=2.3e-13  Score=142.91  Aligned_cols=215  Identities=19%  Similarity=0.226  Sum_probs=147.6

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHH-HHhhcccCCceEEEe
Q 012296          202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIF-IETVLPKMGITATVI  280 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~-~~~~l~~~Gi~v~~v  280 (466)
                      -.|+  ++|+..+||+.+++++|.+.++.++||+.|+.+++...+++||.|  +...|..+... +    ...|....-+
T Consensus        72 d~Ya--gd~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI----~~~Ga~fvDi  143 (460)
T PRK13237         72 EAYA--GSRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQ----ELNGGIFVDI  143 (460)
T ss_pred             hhhc--CCCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHH----HhCCcEEEee
Confidence            4476  689999999999999999999999999999998766668999965  55555544322 2    2234322111


Q ss_pred             --------------C-CCCHHHHHHhhcCC---CceEEEEeCCCCCC-cccc---cHHHHHHHHHhcCCEEEEeCCCCCC
Q 012296          281 --------------D-PADMEGLEAALNNN---NVSLFFTESPTNPF-LRCV---DVKLVSDLCHKKGAIVCIDGTFATP  338 (466)
Q Consensus       281 --------------d-~~Dle~Le~ai~~~---~tklV~lesP~NPt-G~v~---dl~~Ia~la~~~gillIvDea~a~~  338 (466)
                                    + ..|+++|+++|++.   ++++|.++.++|.. |.+.   ++++|.++|++||+.||.|.+...+
T Consensus       144 ~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~g  223 (460)
T PRK13237        144 IIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVE  223 (460)
T ss_pred             ecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhc
Confidence                          1 13899999999753   35578888889988 5665   6899999999999999999995432


Q ss_pred             -----------Cccccc-------ccCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHh-C----CCchHH
Q 012296          339 -----------LNQKAL-------SLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL-G----GALNPN  394 (466)
Q Consensus       339 -----------~~~~~l-------~~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~-G----~~lsp~  394 (466)
                                 +..++.       ...+|.++.|++|.+..+   .||+++.+ +++.++++.+...+ |    +.++.-
T Consensus       224 na~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~---~GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~gr  300 (460)
T PRK13237        224 NAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVN---IGGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGR  300 (460)
T ss_pred             ChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCC---CceEEEECCHHHHHHHHHhccccCCCcCCCChhhh
Confidence                       212222       124799999999999887   37887764 67888888775443 2    223221


Q ss_pred             HHHHHHHhhH-HHH-HHHHHHHHHHHHHHHHHHcC
Q 012296          395 AAYLIIRGMK-TLH-LRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       395 ~a~l~l~~L~-tl~-~R~~~~~~na~~La~~L~~~  427 (466)
                      ....+..+++ .++ ..+++..++++.|++.|++.
T Consensus       301 d~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~~~  335 (460)
T PRK13237        301 DMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLLAA  335 (460)
T ss_pred             HHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHHHC
Confidence            1111122332 222 44556667889999999875

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.56  E-value=1.3e-13  Score=151.75  Aligned_cols=212  Identities=14%  Similarity=0.131  Sum_probs=149.2

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-----
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----  282 (466)
                      .....+.|+..|+++|+++..++++|+ .++.+++++++++||.||+++++|.+.+..   .+...|+..+|+.+     
T Consensus       173 eG~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hg---aLiLsGa~PVYl~P~~n~~  249 (720)
T PRK13578        173 EGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHG---ALIQAGATPVYLETARNPF  249 (720)
T ss_pred             ChHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHH---HHHHcCCeEEEeecccccc
Confidence            345778899999999999999999999 899999999999999999999999987642   13345666666542     


Q ss_pred             -----CC-----HHHHHHhhcCC--------C-ceEEEEeCCCCCCcccccHHHHHHH-HHhcCCEEEEeCCCCCCCccc
Q 012296          283 -----AD-----MEGLEAALNNN--------N-VSLFFTESPTNPFLRCVDVKLVSDL-CHKKGAIVCIDGTFATPLNQK  342 (466)
Q Consensus       283 -----~D-----le~Le~ai~~~--------~-tklV~lesP~NPtG~v~dl~~Ia~l-a~~~gillIvDea~a~~~~~~  342 (466)
                           .+     .+.|+++|+++        + .+++++++|+ ..|.++|+++|+++ +|.++ +|++||+|+....+.
T Consensus       250 Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pT-YdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~  327 (720)
T PRK13578        250 GFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGT-YDGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFI  327 (720)
T ss_pred             CCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCC-CcceeecHHHHHHHhhccCC-cEEEeCcchhhhccC
Confidence                 13     35588887653        1 5899998887 67999999999999 68888 999999987644322


Q ss_pred             c---------cccCCc----EEEECCccccCccccceeEEEEeCHHHH---------HHHHHHHHHhCCCchHHHHHHHH
Q 012296          343 A---------LSLGAD----LVLHSATKFIGGHNDVLAGSISGSGKLV---------TQIRNLHHVLGGALNPNAAYLII  400 (466)
Q Consensus       343 ~---------l~~gaD----ivv~S~sK~lgg~gdv~gG~ivg~~eli---------~~l~~~~~~~G~~lsp~~a~l~l  400 (466)
                      +         +..|+|    +++.|.||.+++..  .+.+|..+...+         ++++.....+..+.+.   |.++
T Consensus       328 p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alT--QaS~LHvk~~~i~g~~~~v~~~r~~~al~m~qSTSPs---Y~Lm  402 (720)
T PRK13578        328 PMMADCSPLLLELNENDPGIFVTQSVHKQQAGFS--QTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPF---YPLF  402 (720)
T ss_pred             cccccCChhhhhcCCCCCCeEEEEChhhcchhhh--hHhhhhcCCcccccccccCCHHHHHHHHHHHcCCChH---HHHH
Confidence            2         467899    99999999999876  567776544332         4555555555444222   1111


Q ss_pred             HhhHH---------HHHHHHHHHHHHHHHHHHH-HcCCCe
Q 012296          401 RGMKT---------LHLRVQQQNSTALRMAKIL-EAHPKV  430 (466)
Q Consensus       401 ~~L~t---------l~~R~~~~~~na~~La~~L-~~~p~V  430 (466)
                      .+|+.         -...+++..+.+..+.+.| +..+.+
T Consensus       403 ASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~  442 (720)
T PRK13578        403 AALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLI  442 (720)
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            12211         1223445566666677766 555544

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.56  E-value=2.6e-13  Score=131.15  Aligned_cols=217  Identities=16%  Similarity=0.250  Sum_probs=161.5

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC---
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  283 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---  283 (466)
                      ..|....+-+.|++++|++.+- ++.|. +|-.+++.+++++||-|+++..+|..++-    .+++.|+.+..++..   
T Consensus        59 ~kPpI~~F~~dlaeFlg~D~~R-~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyv----AAEragl~v~eVp~tg~P  133 (382)
T COG1103          59 TKPPIKDFLEDLAEFLGMDEVR-VTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYV----AAERAGLNVAEVPNTGYP  133 (382)
T ss_pred             cCCcHHHHHHHHHHHhCCceee-ecccchhhHHHHHHHhccCCCEEEEcCcchHHHHH----HHHhcCCeEEecCCCCCC
Confidence            3577888888899999987555 55666 99999999999999999999999988773    345678887777632   


Q ss_pred             ----CHHHHHHhh----cC--CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC-CcccccccCCcEEE
Q 012296          284 ----DMEGLEAAL----NN--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVL  352 (466)
Q Consensus       284 ----Dle~Le~ai----~~--~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~-~~~~~l~~gaDivv  352 (466)
                          ++|...+.|    ++  .++.+.++.+|....|.+.|.++++++|+++|+++++..+|..+ ++.+..+.|+|+++
T Consensus       134 ey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiV  213 (382)
T COG1103         134 EYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIV  213 (382)
T ss_pred             ceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEE
Confidence                344443333    32  23789999999999999999999999999999999999998765 44566778999999


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHHHHHHH-H--------HhCCCchHHHHHHHHHhhHHHHHHHHH---HHHHHHHH
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-H--------VLGGALNPNAAYLIIRGMKTLHLRVQQ---QNSTALRM  420 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~-~--------~~G~~lsp~~a~l~l~~L~tl~~R~~~---~~~na~~L  420 (466)
                      .|.||.++..+  ..|++..+.|+.+.+-+.. .        .+|++.-......+..++.....|+++   -.++++++
T Consensus       214 gSGHKsmAAs~--PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eRVkrWdeEv~kaR~f  291 (382)
T COG1103         214 GSGHKSMAASA--PIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERVKRWDEEVEKARWF  291 (382)
T ss_pred             ecCccchhccC--CeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999887  5799999999887654332 1        345442211112223345555555544   45778899


Q ss_pred             HHHHHcCCCeE
Q 012296          421 AKILEAHPKVK  431 (466)
Q Consensus       421 a~~L~~~p~V~  431 (466)
                      .+.|+++.+++
T Consensus       292 v~elEkigg~~  302 (382)
T COG1103         292 VAELEKIGGVK  302 (382)
T ss_pred             HHHHHHhhhHH
Confidence            99998876544

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.56  E-value=8.4e-13  Score=142.27  Aligned_cols=203  Identities=17%  Similarity=0.136  Sum_probs=135.2

Q ss_pred             EEEeCCHHHHHHHHHHHHcc--------------------------CCCEEEEcCCCCcchHHHHHhhcccCCc---eEE
Q 012296          228 TVIMASGMSASTVMLLALVP--------------------------AGGHIVTTTDCYRKTRIFIETVLPKMGI---TAT  278 (466)
Q Consensus       228 ~l~~sSGs~Ai~~al~all~--------------------------~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi---~v~  278 (466)
                      .+++++|+.|+..++.+...                          ++..|++++..|.+.....    ...|+   .++
T Consensus       162 G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa----~~lglg~~~v~  237 (522)
T TIGR03799       162 GAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAA----DVLGIGRDNLI  237 (522)
T ss_pred             eEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHH----HHcCCCcccEE
Confidence            67788888887776654321                          1347888889998865443    23343   344


Q ss_pred             EeCC-----CCHHHHHHhhcC---CCceEEEEe--CCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccc-----
Q 012296          279 VIDP-----ADMEGLEAALNN---NNVSLFFTE--SPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA-----  343 (466)
Q Consensus       279 ~vd~-----~Dle~Le~ai~~---~~tklV~le--sP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~-----  343 (466)
                      .++.     .|+++|+++|++   .+++.+.+.  ..++.+|.+.|+++|+++|+++|++++||.+|+......+     
T Consensus       238 ~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~  317 (522)
T TIGR03799       238 AIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHL  317 (522)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHH
Confidence            4432     389999998852   124444443  4566899999999999999999999999999986543222     


Q ss_pred             c-c-cCCcEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHH--------------hCCC-chHHHHHHHHHhh--
Q 012296          344 L-S-LGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHV--------------LGGA-LNPNAAYLIIRGM--  403 (466)
Q Consensus       344 l-~-~gaDivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~--------------~G~~-lsp~~a~l~l~~L--  403 (466)
                      + . .++|.++.|.|||+.++-  .+|+++. ++++.+.+......              .|+. ...+..|++++.+  
T Consensus       318 l~gle~aDSit~d~HK~l~~P~--g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~  395 (522)
T TIGR03799       318 LKGIERADSVTIDAHKQLYVPM--GAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGR  395 (522)
T ss_pred             hcCchhCCEEEEChhhcCCcCc--ccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhH
Confidence            1 2 268999999999988885  3577655 45555544321000              0111 1123355555543  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Q 012296          404 KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYP  436 (466)
Q Consensus       404 ~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yP  436 (466)
                      +.++..+++..+.++++.+.|++.|+++.+..|
T Consensus       396 ~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p  428 (522)
T TIGR03799       396 KGYELLIDQSIEKAKYFADLIQQQPDFELVTEP  428 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCC
Confidence            456777888899999999999999998765544

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.55  E-value=1.5e-13  Score=139.22  Aligned_cols=221  Identities=23%  Similarity=0.254  Sum_probs=155.0

Q ss_pred             CccccCC--CchhHHHHH----HHHHhhhCCCc-EEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccC
Q 012296          201 SFEYGRY--GNPTTVVVE----EKMSALEGAES-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM  273 (466)
Q Consensus       201 ~~~Y~R~--~np~~~~Le----e~LA~l~g~e~-~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~  273 (466)
                      +|...||  +...++++|    ++..+++|++. .+-..||+.|+.+++.++++|||.|+-.+-.+++....-. -....
T Consensus        57 GyPgkRyYgGce~VD~vE~laierak~LFga~~anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg~-~v~~s  135 (413)
T COG0112          57 GYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGS-PVNFS  135 (413)
T ss_pred             CCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCCC-CCCcc
Confidence            4444443  556666554    55666899975 4555799999999999999999999999888887432110 01111


Q ss_pred             CceEEEe----C----CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCC-----CCCCc
Q 012296          274 GITATVI----D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-----ATPLN  340 (466)
Q Consensus       274 Gi~v~~v----d----~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~-----a~~~~  340 (466)
                      |.-+..+    |    ..|.|++++.+.+.++|+|+.-...  .-+..|++++.++|++.|++|++|-++     +.+..
T Consensus       136 G~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~Sa--Y~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~  213 (413)
T COG0112         136 GKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGGSA--YSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVH  213 (413)
T ss_pred             ceeEEeEecccccccCccCHHHHHHHHHHhCCCEEEECccc--cccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccC
Confidence            2222221    2    2389999999888789999984433  457789999999999999999999994     45677


Q ss_pred             ccccccCCcEEEECCccccCccccceeEEEEeCH-HHHHHHHHHHH--HhCCCchH-HHHHH--HHHhh-HHHHHHHHHH
Q 012296          341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHH--VLGGALNP-NAAYL--IIRGM-KTLHLRVQQQ  413 (466)
Q Consensus       341 ~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~-eli~~l~~~~~--~~G~~lsp-~~a~l--~l~~L-~tl~~R~~~~  413 (466)
                      ++|+.+ +|+|+.|.||+|.||   +||+|.+++ ++.+++.+...  ..|+.+.- +++..  ....+ ..++...++.
T Consensus       214 p~P~~~-AdvVTtTTHKTlrGP---rGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qV  289 (413)
T COG0112         214 PNPLPH-ADVVTTTTHKTLRGP---RGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQV  289 (413)
T ss_pred             CCCCCc-cceEeCCcccCCCCC---CceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            899998 999999999999999   599999986 78788876332  22332211 12211  11112 1245566788


Q ss_pred             HHHHHHHHHHHHcCC
Q 012296          414 NSTALRMAKILEAHP  428 (466)
Q Consensus       414 ~~na~~La~~L~~~p  428 (466)
                      .+|++.|++.|.++.
T Consensus       290 v~NAkaLAe~l~~~G  304 (413)
T COG0112         290 VKNAKALAEALKERG  304 (413)
T ss_pred             HHHHHHHHHHHHHcC
Confidence            899999999999853

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.55  E-value=1.2e-13  Score=143.22  Aligned_cols=215  Identities=22%  Similarity=0.243  Sum_probs=134.4

Q ss_pred             CchhHHHH----HHHHHhhhCCC----cE-EEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhh-ccc---C-
Q 012296          208 GNPTTVVV----EEKMSALEGAE----ST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV-LPK---M-  273 (466)
Q Consensus       208 ~np~~~~L----ee~LA~l~g~e----~~-l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~-l~~---~-  273 (466)
                      +....+++    ++++.++++++    .+ +=.-||+.|+.+++.++++|||+|+..+..+++....-... .++   . 
T Consensus        60 G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~  139 (399)
T PF00464_consen   60 GCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASG  139 (399)
T ss_dssp             STHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHH
T ss_pred             CcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhccccccccccccccccccc
Confidence            34555543    56667789987    44 34569999999999999999999999988877632110000 000   1 


Q ss_pred             -CceEEE--eC----CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCC-----CCCCcc
Q 012296          274 -GITATV--ID----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-----ATPLNQ  341 (466)
Q Consensus       274 -Gi~v~~--vd----~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~-----a~~~~~  341 (466)
                       ..++..  +|    ..|.+++++.+++.++|+|++..-.  .....|++++.++|++.|++|++|.++     +.+...
T Consensus       140 ~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~--y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~  217 (399)
T PF00464_consen  140 LYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICGASS--YPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFP  217 (399)
T ss_dssp             HHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE-SS--TSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS-
T ss_pred             ceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEECchh--ccCccCHHHHHHHHHhcCcEEEecccccccceehheec
Confidence             112222  23    2389999998887679999996554  346679999999999999999999995     345678


Q ss_pred             cccccCCcEEEECCccccCccccceeEEEEeC--------------HHHHHHHHHHHHH--hCCC-chHHHHHHH-H-Hh
Q 012296          342 KALSLGADLVLHSATKFIGGHNDVLAGSISGS--------------GKLVTQIRNLHHV--LGGA-LNPNAAYLI-I-RG  402 (466)
Q Consensus       342 ~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~--------------~eli~~l~~~~~~--~G~~-lsp~~a~l~-l-~~  402 (466)
                      +|+.. +|++..|+||+|.||.   +|+|+.+              +++.+++.+....  .|+. ++..++.++ + ..
T Consensus       218 ~P~~~-ADvvt~sThKtl~GPr---ggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea  293 (399)
T PF00464_consen  218 NPFPY-ADVVTGSTHKTLRGPR---GGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEA  293 (399)
T ss_dssp             -GCCT-SSEEEEESSGGG-SSS----EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHH
T ss_pred             Ccccc-ceEEEeeccccccccC---ceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcc
Confidence            89987 9999999999999994   8999999              6788888764432  2222 222222211 1 11


Q ss_pred             h-HHHHHHHHHHHHHHHHHHHHHHcCC
Q 012296          403 M-KTLHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       403 L-~tl~~R~~~~~~na~~La~~L~~~p  428 (466)
                      + .......++..+|++.|++.|.+..
T Consensus       294 ~~~~fk~Ya~qVv~NAk~La~~L~~~G  320 (399)
T PF00464_consen  294 LSPEFKEYAKQVVKNAKALAEALQERG  320 (399)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            2 2356677888999999999999874

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.55  E-value=1.9e-13  Score=137.91  Aligned_cols=212  Identities=19%  Similarity=0.233  Sum_probs=159.5

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCH
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM  285 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dl  285 (466)
                      .+....+||+.||+|.+.+.+++|+|.--|+...|..|-  -||-+|..+...|.+...    -.+..+++-..+..+|+
T Consensus       214 ~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLftLak~lpgcei~SD~gNHASMI~----GIrns~v~K~IFrHND~  289 (570)
T KOG1360|consen  214 HSKHHVRLEAELADLHQKEAALLFSSCFVANDSTLFTLAKKLPGCEIFSDEGNHASMIQ----GIRNSRVPKHIFRHNDL  289 (570)
T ss_pred             CCchhhhHHHHHHHHhcCcceeeeeeeeeccchHHHHHHHHCCCcEEeccccchHHHHH----HhhhcCCcceeeccCCH
Confidence            356678899999999999999999999988888887764  477777776666655432    23445666555678899


Q ss_pred             HHHHHhhcCC---CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc--------c-ccccCCcEEEE
Q 012296          286 EGLEAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--------K-ALSLGADLVLH  353 (466)
Q Consensus       286 e~Le~ai~~~---~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~--------~-~l~~gaDivv~  353 (466)
                      +.|++.++..   .+|+|-+|+.+...|.+.||++|++++|+||++..+||+++.++..        . ..-...||+..
T Consensus       290 ~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsG  369 (570)
T KOG1360|consen  290 DHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISG  369 (570)
T ss_pred             HHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhccc
Confidence            9999988643   3799999999999999999999999999999999999997654431        1 11223699999


Q ss_pred             CCccccCccccceeEEEEeCHHHHHHHHHHHH--HhCCCchHHHHHHH---HHhhHHHH--HHHHHHHHHHHHHHHHHHc
Q 012296          354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLI---IRGMKTLH--LRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       354 S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--~~G~~lsp~~a~l~---l~~L~tl~--~R~~~~~~na~~La~~L~~  426 (466)
                      ++.|.||.    +||+|.+...+++-+|.+..  ++...++|....-+   .+.++.-+  ...+++++|.+++.+.|.+
T Consensus       370 TLgKafGc----VGGYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~  445 (570)
T KOG1360|consen  370 TLGKAFGC----VGGYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLME  445 (570)
T ss_pred             chhhhccc----ccceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999986    47999999999999987654  34456777643333   33344332  2234567888888888876


Q ss_pred             C
Q 012296          427 H  427 (466)
Q Consensus       427 ~  427 (466)
                      .
T Consensus       446 ~  446 (570)
T KOG1360|consen  446 L  446 (570)
T ss_pred             c
Confidence            4

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.54  E-value=1.1e-12  Score=139.14  Aligned_cols=219  Identities=21%  Similarity=0.195  Sum_probs=149.5

Q ss_pred             HHHHHHHHhhhCC-C--cEEEeCCHHHHHHHHHHHHcc-----C---CC------EEEEcCCCCcchHHHHHhhcccCCc
Q 012296          213 VVVEEKMSALEGA-E--STVIMASGMSASTVMLLALVP-----A---GG------HIVTTTDCYRKTRIFIETVLPKMGI  275 (466)
Q Consensus       213 ~~Lee~LA~l~g~-e--~~l~~sSGs~Ai~~al~all~-----~---Gd------~Vlv~~~~y~~t~~~~~~~l~~~Gi  275 (466)
                      +++-..++++++. +  ...++++|++|+.+++.+...     .   +.      +|+++...|.+.....    ..+|+
T Consensus       104 ~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa----~~lG~  179 (460)
T COG0076         104 ERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAA----RYLGL  179 (460)
T ss_pred             HHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHH----HHhCC
Confidence            3445556667776 2  467888888988877764321     1   11      6999999998866443    34455


Q ss_pred             eEEEeC------CCCHHHHHHhhcCCCceE--EEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc---ccc-
Q 012296          276 TATVID------PADMEGLEAALNNNNVSL--FFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---QKA-  343 (466)
Q Consensus       276 ~v~~vd------~~Dle~Le~ai~~~~tkl--V~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~---~~~-  343 (466)
                      +.+.++      ..|+++++++|+++ +..  |+....+.++|.+-|+++|+++|++++++++||.+|+..+.   ... 
T Consensus       180 ~~~~v~~~~~~~~id~~~l~~~i~~~-t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~  258 (460)
T COG0076         180 GLRRVPTVPTDYRIDVDALEEAIDEN-TIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDG  258 (460)
T ss_pred             CceeEEeccCccccCHHHHHHHHHhh-ccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccc
Confidence            444332      23899999999986 544  77778888999999999999999999999999999887533   111 


Q ss_pred             ---ccc-CCcEEEECCccccCccccceeEEEEeC-HH-HHHHHHHHHHHhCC-C----------c--hHHHHHHHHHh--
Q 012296          344 ---LSL-GADLVLHSATKFIGGHNDVLAGSISGS-GK-LVTQIRNLHHVLGG-A----------L--NPNAAYLIIRG--  402 (466)
Q Consensus       344 ---l~~-gaDivv~S~sK~lgg~gdv~gG~ivg~-~e-li~~l~~~~~~~G~-~----------l--sp~~a~l~l~~--  402 (466)
                         ... ++|-++.++|||+..+-  .+|+++.+ ++ +.+.+.......++ .          .  ....+|..++.  
T Consensus       259 ~~~f~l~~vdSIt~d~HK~g~aP~--~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG  336 (460)
T COG0076         259 RWDFGLEGVDSITVDGHKYGLAPI--GCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLG  336 (460)
T ss_pred             hhhcCCCCceEEEECcccccCCCC--CceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhC
Confidence               112 68999999999988775  45666654 43 33333322222221 1          1  23456665554  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCC
Q 012296          403 MKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL  438 (466)
Q Consensus       403 L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl  438 (466)
                      .+-+...+++..++++++++.|++.+..+-+.-|.+
T Consensus       337 ~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l  372 (460)
T COG0076         337 REGYRKLLDRTLELARYLAEELEKLGDFELVNEPEL  372 (460)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCcc
Confidence            466778889999999999999999876665555544

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.53  E-value=2.3e-12  Score=126.75  Aligned_cols=212  Identities=19%  Similarity=0.210  Sum_probs=158.7

Q ss_pred             HHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC-----
Q 012296          212 TVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----  283 (466)
Q Consensus       212 ~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----  283 (466)
                      .+++.+-+...+..   ..-++-++|+.++..++..++.|||.|++....-.+.+  +...++++|++|+.++..     
T Consensus        52 m~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~r--a~D~~~r~ga~V~~v~~~~G~~~  129 (385)
T KOG2862|consen   52 MDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQR--AADCARRYGAEVDVVEADIGQAV  129 (385)
T ss_pred             HHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHH--HHHHHHhhCceeeEEecCcccCc
Confidence            44556666666654   22344578889999999999999999888655444422  235688899999988532     


Q ss_pred             CHHHHHHhhcCCCceEEEEeCCCCCCccccc-HHHHHHHHHhcCCEEEEeCCCC-CCCcccccccCCcEEEECCccccCc
Q 012296          284 DMEGLEAALNNNNVSLFFTESPTNPFLRCVD-VKLVSDLCHKKGAIVCIDGTFA-TPLNQKALSLGADLVLHSATKFIGG  361 (466)
Q Consensus       284 Dle~Le~ai~~~~tklV~lesP~NPtG~v~d-l~~Ia~la~~~gillIvDea~a-~~~~~~~l~~gaDivv~S~sK~lgg  361 (466)
                      .+|+|.+++.++++++|++++-...||...| ++.+-++||+|+.+++||.+-. .+..+...++|+|+......|.+++
T Consensus       130 ~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~a  209 (385)
T KOG2862|consen  130 PLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGA  209 (385)
T ss_pred             cHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecchhhcCC
Confidence            6999999999988999999999899999999 6778899999999999999843 2344566789999999999999999


Q ss_pred             cccceeEEEEeCHHHHHHHHHHHH--------------HhCCC---------chH-----HHHHHHHHhhHHHHHHHHHH
Q 012296          362 HNDVLAGSISGSGKLVTQIRNLHH--------------VLGGA---------LNP-----NAAYLIIRGMKTLHLRVQQQ  413 (466)
Q Consensus       362 ~gdv~gG~ivg~~eli~~l~~~~~--------------~~G~~---------lsp-----~~a~l~l~~L~tl~~R~~~~  413 (466)
                      |.+  .+.|..++...++++..+.              .+|..         ++.     +.+.+.+-..+-++.++++|
T Consensus       210 P~G--LsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH  287 (385)
T KOG2862|consen  210 PAG--LSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRH  287 (385)
T ss_pred             CCC--cceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            973  4778888877777764332              22221         111     22333333345578889999


Q ss_pred             HHHHHHHHHHHHcC
Q 012296          414 NSTALRMAKILEAH  427 (466)
Q Consensus       414 ~~na~~La~~L~~~  427 (466)
                      +++++++...|+++
T Consensus       288 ~e~s~~l~~~l~~~  301 (385)
T KOG2862|consen  288 REMSKWLKLSLEAL  301 (385)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999985

>PLN02263 serine decarboxylase

Probab=99.52  E-value=3e-12  Score=135.36  Aligned_cols=229  Identities=16%  Similarity=0.125  Sum_probs=159.4

Q ss_pred             CccccCCC---chhHHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHHcc--CCCEEEEcCCCCcchHHHHHhhcc
Q 012296          201 SFEYGRYG---NPTTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLP  271 (466)
Q Consensus       201 ~~~Y~R~~---np~~~~Lee~LA~l~g~e----~~l~~sSGs~Ai~~al~all~--~Gd~Vlv~~~~y~~t~~~~~~~l~  271 (466)
                      .+.++.|+   ...-.++-+++++++|.+    ..+++++|++++..++.+...  +...+++++..|.+..+    .+.
T Consensus       121 p~~~s~~~~~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~K----Aa~  196 (470)
T PLN02263        121 PFIESNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK----AAR  196 (470)
T ss_pred             ccccCCcchhHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHH----HHH
Confidence            35555442   233345677788888863    378888889998887776543  33478888888887654    344


Q ss_pred             cCCceEEEeCC-----CCHHHHHHhhcCCC--ceEEEEeCCCCCCcccccHHHHHHHHHhcCC-----EEEEeCCCCCCC
Q 012296          272 KMGITATVIDP-----ADMEGLEAALNNNN--VSLFFTESPTNPFLRCVDVKLVSDLCHKKGA-----IVCIDGTFATPL  339 (466)
Q Consensus       272 ~~Gi~v~~vd~-----~Dle~Le~ai~~~~--tklV~lesP~NPtG~v~dl~~Ia~la~~~gi-----llIvDea~a~~~  339 (466)
                      .+|++++.++.     .|+++|+++|.++.  +-+|+....+.++|.+-|+++|+++|+++|+     +++||++|++.+
T Consensus       197 llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~  276 (470)
T PLN02263        197 MYRMECVKVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLM  276 (470)
T ss_pred             hcCCcceEeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhH
Confidence            46666666653     38999999997542  4567677788899999999999999999997     999999987643


Q ss_pred             c---cc--c--cccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH--------HhCCC--chHHHHHHHHH-
Q 012296          340 N---QK--A--LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--------VLGGA--LNPNAAYLIIR-  401 (466)
Q Consensus       340 ~---~~--~--l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--------~~G~~--lsp~~a~l~l~-  401 (466)
                      .   ..  .  ...++|-+..+.|||++.+-  .+|+++.+++.+..+.....        ..|.-  ..+...|..++ 
T Consensus       277 lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~--~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~  354 (470)
T PLN02263        277 MPFVKRAPKVTFKKPIGSVSVSGHKFVGCPM--PCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNR  354 (470)
T ss_pred             hhhcccccccCCCcCccEEEECCccccCCCc--CEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHH
Confidence            2   11  1  12248999999999999886  57888877665543322111        11221  12456676665 


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Q 012296          402 -GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYP  436 (466)
Q Consensus       402 -~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yP  436 (466)
                       |.+.+..++++..++++++.+.|++++. ..+..|
T Consensus       355 ~G~~G~~~~i~~~~~~A~~l~~~l~~~g~-~~~~~p  389 (470)
T PLN02263        355 KGYRGFQKEVQKCLRNAHYLKDRLREAGI-SAMLNE  389 (470)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHhCCC-eEEeCC
Confidence             5677889999999999999999998843 333334

>PLN00144 acetylornithine transaminase

Probab=99.52  E-value=2.4e-12  Score=133.99  Aligned_cols=196  Identities=14%  Similarity=0.156  Sum_probs=131.5

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc---------C------CCEEEEcCCCCcchHHHHHhhcc
Q 012296          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP---------A------GGHIVTTTDCYRKTRIFIETVLP  271 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~---------~------Gd~Vlv~~~~y~~t~~~~~~~l~  271 (466)
                      +.++...+|.++|+++.+.+.+++.+||++|+..++.....         +      ..+|+.....|++........-.
T Consensus        54 ~~~~~~~~la~~l~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~  133 (382)
T PLN00144         54 YHTIPQVELAKRLVASSFADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTS  133 (382)
T ss_pred             ccCHHHHHHHHHHHhcCCCCeEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCC
Confidence            44677788889998887667888999999999988874421         0      24788888888874322111100


Q ss_pred             ------cC---CceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccc--c--HHHHHHHHHhcCCEEEEeCCCCCC
Q 012296          272 ------KM---GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV--D--VKLVSDLCHKKGAIVCIDGTFATP  338 (466)
Q Consensus       272 ------~~---Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~--d--l~~Ia~la~~~gillIvDea~a~~  338 (466)
                            .+   --.+.+++..|++++++.+...++++|++|..+||.|...  .  +++|.++|++||+++|+||++...
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~  213 (382)
T PLN00144        134 KEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGL  213 (382)
T ss_pred             CccccccCCCCCCCeEEeCCCCHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence                  00   0124556667899999998755689999998889955443  3  789999999999999999996532


Q ss_pred             Cc------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHH
Q 012296          339 LN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL  406 (466)
Q Consensus       339 ~~------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl  406 (466)
                      ..      ........|  +.+++|.+++.  ...|++++++++++.+...........+|..+.+++..++.+
T Consensus       214 gr~g~~~~~~~~~~~PD--i~t~sK~l~~G--~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i  283 (382)
T PLN00144        214 GRTGYLWAHEAYGVEPD--IMTLAKPLAGG--LPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKI  283 (382)
T ss_pred             CccchHhhhhhcCCCCC--EEEecccccCC--cceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            11      111223456  56689999865  468999999999887753222222234566665555444443

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.52  E-value=9e-13  Score=133.62  Aligned_cols=208  Identities=19%  Similarity=0.228  Sum_probs=136.9

Q ss_pred             HHHHHHHhhh----CC------CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          214 VVEEKMSALE----GA------ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       214 ~Lee~LA~l~----g~------e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      .+++.+|++.    |.      +..+++..++.|+.++...|..|||..+++.|.|++..+-+   --+.|+++..+.. 
T Consensus       125 ~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl---~~rTgveivpv~c~  201 (471)
T KOG0256|consen  125 SFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDL---RWRTGVEIVPVHCS  201 (471)
T ss_pred             HHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccc---eeccCceEEEEEee
Confidence            4566666543    32      45555556668999888889999999999999999853222   2245777766632 


Q ss_pred             ------CCHHHHHHhhcC-----CCceEEEEeCCCCCCcccccH---HHHHHHHHhcCCEEEEeCCCCCCCcccc-----
Q 012296          283 ------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQKA-----  343 (466)
Q Consensus       283 ------~Dle~Le~ai~~-----~~tklV~lesP~NPtG~v~dl---~~Ia~la~~~gillIvDea~a~~~~~~~-----  343 (466)
                            .+.+++|+++++     .++|.|++.||+||.|...+-   ..+..+|.++++.+|+||+|+..++...     
T Consensus       202 Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv  281 (471)
T KOG0256|consen  202 SSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSV  281 (471)
T ss_pred             cCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEH
Confidence                  257888887752     258999999999999999974   5566778899999999999876443221     


Q ss_pred             c--------ccCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH-------HH
Q 012296          344 L--------SLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-------LH  407 (466)
Q Consensus       344 l--------~~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~t-------l~  407 (466)
                      +        ...-.-++.|+||-||.+|- +.|+|+.. +++....+++.. +|.. +++..+++..-|..       +.
T Consensus       282 ~ev~~~~~~~~~rvHivyslSKD~GlpGf-RvGviYS~ne~VvsaA~kmss-f~~v-Ss~tQ~~la~LLSD~~f~~~yl~  358 (471)
T KOG0256|consen  282 LEVRKDPHLDPDRVHIVYSLSKDFGLPGF-RVGVIYSNNEDVVSAATKMSS-FGLV-SSQTQYLLASLLSDEEFTREYLR  358 (471)
T ss_pred             HHHhhccccCCCcEEEEEEeccccCCCce-EEEEEEecChHHHHHHHHHhh-ccCC-cHHHHHHHHHHhchHHHHHHHHH
Confidence            1        11122578999999999984 57888765 556666655543 4443 44444443322221       12


Q ss_pred             HHHHHHHHHHHHHHHHHHcC
Q 012296          408 LRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       408 ~R~~~~~~na~~La~~L~~~  427 (466)
                      +--+++...-+++.+.|++.
T Consensus       359 en~~Rl~~rh~~~~~gLk~l  378 (471)
T KOG0256|consen  359 ENNKRLRIRHRYIVEGLKAL  378 (471)
T ss_pred             HHHHHHHHHHHHHHhhHHhc
Confidence            22233344456677777764

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.51  E-value=2.7e-12  Score=134.71  Aligned_cols=217  Identities=18%  Similarity=0.168  Sum_probs=136.8

Q ss_pred             CCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHHcc----CC-----CEEEEcCCCCcchHHHHHhh-------
Q 012296          207 YGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALVP----AG-----GHIVTTTDCYRKTRIFIETV-------  269 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~-e~~l~~sSGs~Ai~~al~all~----~G-----d~Vlv~~~~y~~t~~~~~~~-------  269 (466)
                      +.++...+|.++|.++.+. +.+.+++||++|+..++.....    .|     .+|+.....|++........       
T Consensus        79 ~~~~~~~~la~~L~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~  158 (408)
T PRK04612         79 FYSAPPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQ  158 (408)
T ss_pred             cCCHHHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccc
Confidence            4566677888888887643 6788889999999998874431    22     36888888888842211111       


Q ss_pred             --cccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc-----HHHHHHHHHhcCCEEEEeCCCCCCCc--
Q 012296          270 --LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD-----VKLVSDLCHKKGAIVCIDGTFATPLN--  340 (466)
Q Consensus       270 --l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d-----l~~Ia~la~~~gillIvDea~a~~~~--  340 (466)
                        .....-.+..++..|++.++++++++++.+|++| |.+++|.+.+     +++|.++|+++|+++|+||++.....  
T Consensus       159 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~e-P~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G  237 (408)
T PRK04612        159 EGYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLE-PIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTG  237 (408)
T ss_pred             cCCCCCCCCceEcCCCCHHHHHHhhCCCCEEEEEEC-CccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC
Confidence              0001112345666789999999975556777775 5555655542     88999999999999999999763211  


Q ss_pred             --ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHH
Q 012296          341 --QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNST  416 (466)
Q Consensus       341 --~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~--~R~~~~~~n  416 (466)
                        ......+.+..+.+++|.++++  ...|++++++++++.+...........+|..+.+++..|+.+.  ..+++..+.
T Consensus       238 ~~~a~~~~~~~pdi~t~~K~l~~G--~piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~  315 (408)
T PRK04612        238 TLFAHWQEQVTPDIVTLAKALGGG--FPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQ  315 (408)
T ss_pred             chhhhhhcCCCCCEEEEcchhcCC--CceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence              1111234555666789999853  4567778888887776542221112245776666666666553  233444455


Q ss_pred             HHHHHHHHHc
Q 012296          417 ALRMAKILEA  426 (466)
Q Consensus       417 a~~La~~L~~  426 (466)
                      .+++.+.|++
T Consensus       316 g~~l~~~l~~  325 (408)
T PRK04612        316 SAALRAGLEA  325 (408)
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.51  E-value=2.8e-12  Score=132.63  Aligned_cols=218  Identities=15%  Similarity=0.120  Sum_probs=133.2

Q ss_pred             hHHHHHHHHHhhh-CC-C-cEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcch-HHHHHhh-----cccCC--c-e
Q 012296          211 TTVVVEEKMSALE-GA-E-STVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKT-RIFIETV-----LPKMG--I-T  276 (466)
Q Consensus       211 ~~~~Lee~LA~l~-g~-e-~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t-~~~~~~~-----l~~~G--i-~  276 (466)
                      ....+++.+++.+ +. + .+++++||++|+..++....  ..+++|++.+..|++. ...+...     ...++  + .
T Consensus        67 ~~~~~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~  146 (375)
T PRK04260         67 YLNSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPH  146 (375)
T ss_pred             cCCHHHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCC
Confidence            3445666666644 22 2 35677899999998887653  4567888888887763 2222110     00111  1 1


Q ss_pred             EEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCcc-cc-----ccc
Q 012296          277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLNQ-KA-----LSL  346 (466)
Q Consensus       277 v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~~~-~~-----l~~  346 (466)
                      +.+.+..|++.++++++++ +++|++|.++|++|.+.+    +++|.++|+++|+++|+||++...... .+     ...
T Consensus       147 ~~~~~~~dl~~l~~~l~~~-~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~  225 (375)
T PRK04260        147 FSYAIFNDLNSVKALVNKN-TAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGI  225 (375)
T ss_pred             eEEeCCCCHHHHHHhcCCC-eEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCC
Confidence            2333456899999988764 899999999999998765    899999999999999999997532111 11     123


Q ss_pred             CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHH----HHHH
Q 012296          347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNST----ALRM  420 (466)
Q Consensus       347 gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~--~R~~~~~~n----a~~L  420 (466)
                      ..|++  |++|.++++  ...|++++++++.+.+.......-...++..+..+...++.+.  ..+++..++    .+.+
T Consensus       226 ~pdi~--t~sK~l~~G--~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l  301 (375)
T PRK04260        226 EPDIF--TLAKGLANG--VPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQL  301 (375)
T ss_pred             CCCEE--EecccccCC--cceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            35654  799999853  3579999999888776532111111224555544444443322  223333333    3344


Q ss_pred             HHHHHcCCCeEEE
Q 012296          421 AKILEAHPKVKRV  433 (466)
Q Consensus       421 a~~L~~~p~V~~V  433 (466)
                      .+.+.+++.+..+
T Consensus       302 ~~~~~~~~~~~~~  314 (375)
T PRK04260        302 QKALQDKETVTTV  314 (375)
T ss_pred             HHHHhhCCCeeEE
Confidence            4555555544444

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.50  E-value=2.6e-12  Score=132.92  Aligned_cols=228  Identities=16%  Similarity=0.089  Sum_probs=148.2

Q ss_pred             CCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc-cCC-CEEEEcCCCCcchHHHHHhh---------cccCC
Q 012296          206 RYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV-PAG-GHIVTTTDCYRKTRIFIETV---------LPKMG  274 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all-~~G-d~Vlv~~~~y~~t~~~~~~~---------l~~~G  274 (466)
                      .+.++...+|+++|+++.+.+.+++++||++|+.+++.... ..| ++||..+..|++........         ....-
T Consensus        62 ~~~~~~~~~la~~l~~~~~~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~  141 (364)
T PRK04013         62 MFEHEEKEEMLEELSKWVNYEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLV  141 (364)
T ss_pred             CcCCHHHHHHHHHHHhhcCCCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCC
Confidence            46688899999999999887889999999999999988553 345 89999999998843221110         01111


Q ss_pred             ceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccc-c---HHHHHHHHHhcCCEEEEeCCCCCC---C--cccccc
Q 012296          275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV-D---VKLVSDLCHKKGAIVCIDGTFATP---L--NQKALS  345 (466)
Q Consensus       275 i~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~-d---l~~Ia~la~~~gillIvDea~a~~---~--~~~~l~  345 (466)
                      ..+..++..|++.+++.+.++ +++|++|......|... |   +++|.++|++||+++|.||++...   -  ......
T Consensus       142 ~~~~~~~~~d~~~l~~~i~~~-~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~g  220 (364)
T PRK04013        142 PGFKHIPFNDVEAAKEAITKE-TAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYK  220 (364)
T ss_pred             CCcEEecCCCHHHHHHHhcCC-cEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhcC
Confidence            224445566889999999764 99999998876555544 4   899999999999999999996532   1  112233


Q ss_pred             cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 012296          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILE  425 (466)
Q Consensus       346 ~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~  425 (466)
                      ...|+++  +.|.++++  ...|.++.++++.. . .....+  ..+|..+.+++..++.++.  +...++++.+.+.|.
T Consensus       221 v~PDiv~--~gK~lggG--~P~~a~~~~~~~~~-~-~~~~T~--~gnp~~~aaa~a~l~~i~~--~~l~~~~~~~l~~l~  290 (364)
T PRK04013        221 VEPDIVT--MGKGIGNG--VPVSLTLTNFDVER-G-KHGSTF--GGNPLACKAVAVTLRILRR--ERLVEKAGEKFIEIK  290 (364)
T ss_pred             CCCCEEE--ecccccCC--ceeEEEEecccccC-C-CcCCCC--CcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHhc
Confidence            4468777  58999984  45566666665421 0 011112  2367777766666666542  223344433322221


Q ss_pred             cCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEec
Q 012296          426 AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVL  463 (466)
Q Consensus       426 ~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~  463 (466)
                       .|.|.                  ..+|.|.|+++|+.
T Consensus       291 -~~~v~------------------~vRG~Gl~~gve~~  309 (364)
T PRK04013        291 -GERVV------------------TTRGRGLMIGIVLK  309 (364)
T ss_pred             -cCcce------------------eeeeCcEEEEEEeC
Confidence             13232                  33678888888875

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.50  E-value=3.2e-12  Score=133.65  Aligned_cols=212  Identities=11%  Similarity=0.053  Sum_probs=136.7

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc------CC-CEEEEcCCCCcch-HHHHHhhcccC-----
Q 012296          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP------AG-GHIVTTTDCYRKT-RIFIETVLPKM-----  273 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~------~G-d~Vlv~~~~y~~t-~~~~~~~l~~~-----  273 (466)
                      +.++...+|.++|.+..+.+.+++++||++|+..++.....      +| ++||..+..|++. ...+. .....     
T Consensus        75 ~~~~~~~~la~~l~~~~~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~-~s~~~~~~~~  153 (395)
T PRK03715         75 FYNEPMAKLAGLLTQHSCFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMS-ASGKPGWDTI  153 (395)
T ss_pred             ccCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHh-hcCCcccccC
Confidence            34566667777777765567899999999999999886641      23 5788888877773 22221 11100     


Q ss_pred             ----CceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC----C--
Q 012296          274 ----GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP----L--  339 (466)
Q Consensus       274 ----Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~----~--  339 (466)
                          -..+..++..|++++++.+.++ +++|++|...+..|.+.+    +++|.++|++||+++|+||++...    .  
T Consensus       154 ~~~~~~~~~~~~~~d~~~l~~~l~~~-~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~  232 (395)
T PRK03715        154 FAPQVPGFPKAELNDIASVEKLITDK-TVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLF  232 (395)
T ss_pred             CCCCCCCceeeCCchHHHHHHHcCCC-ceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchh
Confidence                0012223346889999999764 899999988888888776    999999999999999999997631    1  


Q ss_pred             cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHH-HHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHH
Q 012296          340 NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-HHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNST  416 (466)
Q Consensus       340 ~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~-~~~~G~~lsp~~a~l~l~~L~tl~--~R~~~~~~n  416 (466)
                      .........|+++  ++|.++++  ...|.+++++++....... ...+  ..+|..+..++..++.+.  ..+++..+.
T Consensus       233 a~~~~gv~PDi~t--~gK~lg~G--~p~~av~~~~~i~~~~~~~~~~T~--~g~pl~~aaala~L~~l~~~~l~~~~~~~  306 (395)
T PRK03715        233 AYELSGIEPDIMT--LGKGIGGG--VPLAALLAKAEVAVFEAGDQGGTY--NGNPLMTAVGVAVISQLLAPGFLEGVRAR  306 (395)
T ss_pred             hHhhcCCCCceee--ehhhhhCC--cceEEEEEccccccccCCCcCCCC--CCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            1122233468765  67999974  3467777888775211111 0111  234666666666666554  234555566


Q ss_pred             HHHHHHHHHc
Q 012296          417 ALRMAKILEA  426 (466)
Q Consensus       417 a~~La~~L~~  426 (466)
                      .+.+.+.|++
T Consensus       307 g~~l~~~L~~  316 (395)
T PRK03715        307 GEYLKEKLLE  316 (395)
T ss_pred             HHHHHHHHHH
Confidence            6666666654

>PLN02880 tyrosine decarboxylase

Probab=99.50  E-value=3.8e-12  Score=136.48  Aligned_cols=217  Identities=14%  Similarity=0.137  Sum_probs=143.3

Q ss_pred             HHHHHHHHHhhhCCCc---------EEEeCCHHHHHHHHHHHHcc-----C-----CC-EEEEcCCCCcchHHHHHhhcc
Q 012296          212 TVVVEEKMSALEGAES---------TVIMASGMSASTVMLLALVP-----A-----GG-HIVTTTDCYRKTRIFIETVLP  271 (466)
Q Consensus       212 ~~~Lee~LA~l~g~e~---------~l~~sSGs~Ai~~al~all~-----~-----Gd-~Vlv~~~~y~~t~~~~~~~l~  271 (466)
                      -.++-+++++++|.++         .+++++|++|+..++.+...     .     .. .|++++..|.+..+..    .
T Consensus       124 E~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa----~  199 (490)
T PLN02880        124 EMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKAC----Q  199 (490)
T ss_pred             HHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHH----H
Confidence            3445666777777642         67777888887776654321     1     12 4556777787765443    3


Q ss_pred             cCCc-----eEEEeC-----CCCHHHHHHhhcCC-----CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCC
Q 012296          272 KMGI-----TATVID-----PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA  336 (466)
Q Consensus       272 ~~Gi-----~v~~vd-----~~Dle~Le~ai~~~-----~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a  336 (466)
                      ..|+     ....+|     ..|+++|+++|++.     .+-+|+.+..+..+|.+.|+++|+++|+++|++++||++|+
T Consensus       200 ~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~g  279 (490)
T PLN02880        200 IAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYA  279 (490)
T ss_pred             HcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhH
Confidence            3444     233333     24899999988642     24566766777789999999999999999999999999988


Q ss_pred             CCCcccc-----cc--cCCcEEEECCccccCccccceeEEEEeCH-H-HHHHHHHHHHH--------------------h
Q 012296          337 TPLNQKA-----LS--LGADLVLHSATKFIGGHNDVLAGSISGSG-K-LVTQIRNLHHV--------------------L  387 (466)
Q Consensus       337 ~~~~~~~-----l~--~gaDivv~S~sK~lgg~gdv~gG~ivg~~-e-li~~l~~~~~~--------------------~  387 (466)
                      ......+     +.  .++|.++.++|||+..+-  .+|+++.++ . +.+.+......                    .
T Consensus       280 g~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~--~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~  357 (490)
T PLN02880        280 GSACICPEYRHYIDGVEEADSFNMNAHKWFLTNF--DCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPL  357 (490)
T ss_pred             HHHHhCHHHHHHhcCchhcCEEEECchhhcCCCc--cEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCC
Confidence            7543221     12  358999999999999886  467777653 2 22222211100                    0


Q ss_pred             CCCchHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe
Q 012296          388 GGALNPNAAYLII--RGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVH  434 (466)
Q Consensus       388 G~~lsp~~a~l~l--~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~  434 (466)
                      |-....+..|+.+  .|.+.+..++++..+.++++++.|++.|+++.+.
T Consensus       358 ~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~  406 (490)
T PLN02880        358 GRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVT  406 (490)
T ss_pred             CCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEec
Confidence            1111234555554  4677888999999999999999999988765443

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.50  E-value=6e-12  Score=133.29  Aligned_cols=216  Identities=14%  Similarity=0.153  Sum_probs=138.2

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc----CC-CEEEEcCCCCcchHHHHHhh-----c-ccC
Q 012296          207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP----AG-GHIVTTTDCYRKTRIFIETV-----L-PKM  273 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~----~G-d~Vlv~~~~y~~t~~~~~~~-----l-~~~  273 (466)
                      ..++...+|.++|+++...  +.+++++||++|+.+++.....    .| .+||.....|++........     . +.+
T Consensus       114 ~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~  193 (442)
T TIGR03372       114 LLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPF  193 (442)
T ss_pred             cCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCC
Confidence            3578888899999998754  4577789999999998874321    23 57888888888743221111     0 011


Q ss_pred             ---CceEEEeCCCCHHHHHHhhcC-----CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC---
Q 012296          274 ---GITATVIDPADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP---  338 (466)
Q Consensus       274 ---Gi~v~~vd~~Dle~Le~ai~~-----~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~---  338 (466)
                         .-.+..++..|.+.+++.++.     .++.+|++|......|.+.+    +++|.++|++||+++|+||++.+.   
T Consensus       194 ~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRt  273 (442)
T TIGR03372       194 MPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRT  273 (442)
T ss_pred             CCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCcc
Confidence               112445666688888777742     34899999998877788887    999999999999999999997421   


Q ss_pred             -C--cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHhhHHHHHH--HH
Q 012296          339 -L--NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLR--VQ  411 (466)
Q Consensus       339 -~--~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~l--sp~~a~l~l~~L~tl~~R--~~  411 (466)
                       .  .........|+++  ++|.++++- ...|.+++++++++.+.......+.+.  +|..+..++..|+.++..  ++
T Consensus       274 G~~~a~e~~gv~PDivt--~gK~lg~G~-~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~  350 (442)
T TIGR03372       274 GKMFACEHEGVQPDILC--LAKALGGGV-MPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPA  350 (442)
T ss_pred             ccchhhhhcCCCCCeee--ehhhhcCCc-ccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence             1  1122233468876  899998641 135667788888877632111223333  577666666666655321  23


Q ss_pred             HHHHHHHHHHHHHH
Q 012296          412 QQNSTALRMAKILE  425 (466)
Q Consensus       412 ~~~~na~~La~~L~  425 (466)
                      +..+.-+++.+.|+
T Consensus       351 ~~~~~G~~l~~~L~  364 (442)
T TIGR03372       351 QAAIKGDFLLDGFQ  364 (442)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333444444444

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.49  E-value=9e-13  Score=136.87  Aligned_cols=206  Identities=15%  Similarity=0.087  Sum_probs=137.9

Q ss_pred             hhHHHHHHHHHhhhCC-C--cEEEeC-CHHHHHHHHHHHHccC-CCEEEEcCCCCcchHHHHHhhcccCCc-eEEEeCC-
Q 012296          210 PTTVVVEEKMSALEGA-E--STVIMA-SGMSASTVMLLALVPA-GGHIVTTTDCYRKTRIFIETVLPKMGI-TATVIDP-  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~-e--~~l~~s-SGs~Ai~~al~all~~-Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi-~v~~vd~-  282 (466)
                      ...++.++.++++++. +  ++++++ ||+.++++++.+++++ ++.|+. ...|+..  +.....+..|+ +++.+.. 
T Consensus        48 ~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~g~f~~~--~~~~~~~~~g~~~v~~~~~~  124 (378)
T PRK03080         48 ALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA-WESFGSK--WATDVVKQLKLEDPRVLEAD  124 (378)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCCCCcceEEE-eCHHHHH--HHHHHHhhcCCCCceEeccC
Confidence            4466789999999997 2  466665 8899999999999875 445554 5666652  33222355677 7776653 


Q ss_pred             ----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECCcc
Q 012296          283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK  357 (466)
Q Consensus       283 ----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~sK  357 (466)
                          .|+++    ++.  +++|.+.+..|.||.+.|+++|++  |++|+++++|.+++.+.. .+..+  +|+++.|.+|
T Consensus       125 ~g~~~d~~~----i~~--~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~~--iD~~~~s~~K  194 (378)
T PRK03080        125 YGSLPDLSA----VDF--DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWSK--LDVYTFSWQK  194 (378)
T ss_pred             CCCCCCHhh----cCC--CCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCCCCHHH--CcEEEEehhh
Confidence                23444    333  567889899999999999999999  889999999999775433 33222  7999999999


Q ss_pred             ccCccccceeEEEEeCHHHHHHHHHHH------------------H-Hh-CCC--chHH-HHHHHHHhhHH------HHH
Q 012296          358 FIGGHNDVLAGSISGSGKLVTQIRNLH------------------H-VL-GGA--LNPN-AAYLIIRGMKT------LHL  408 (466)
Q Consensus       358 ~lgg~gdv~gG~ivg~~eli~~l~~~~------------------~-~~-G~~--lsp~-~a~l~l~~L~t------l~~  408 (466)
                      ||+++.  ..|+++.++++++++....                  . .+ +++  ..+. ..+.+...++.      ++.
T Consensus       195 ~l~~P~--G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~  272 (378)
T PRK03080        195 VLGGEG--GHGMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDA  272 (378)
T ss_pred             hCCCCC--ceEEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHH
Confidence            998854  3699999998887654310                  0 00 111  1122 22222223332      344


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCe
Q 012296          409 RVQQQNSTALRMAKILEAHPKV  430 (466)
Q Consensus       409 R~~~~~~na~~La~~L~~~p~V  430 (466)
                      +.+++.+.++.+.++|++.+.+
T Consensus       273 i~~r~~~l~~~l~~~l~~~~~~  294 (378)
T PRK03080        273 LIARTAANASVLYDWAEKTPWA  294 (378)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCc
Confidence            4566777888888888877654

>PLN02590 probable tyrosine decarboxylase

Probab=99.49  E-value=1e-11  Score=134.11  Aligned_cols=229  Identities=16%  Similarity=0.169  Sum_probs=150.2

Q ss_pred             ccccCCCchhHHHHH----HHHHhhhCCCc---------EEEeCCHHHHHHHHHHHHcc----C-C-----C-EEEEcCC
Q 012296          202 FEYGRYGNPTTVVVE----EKMSALEGAES---------TVIMASGMSASTVMLLALVP----A-G-----G-HIVTTTD  257 (466)
Q Consensus       202 ~~Y~R~~np~~~~Le----e~LA~l~g~e~---------~l~~sSGs~Ai~~al~all~----~-G-----d-~Vlv~~~  257 (466)
                      ..+++...|...++|    ++|++++|.++         .+++++|++|+..++.+...    . |     + .|++++.
T Consensus       158 ~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~  237 (539)
T PLN02590        158 VGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQ  237 (539)
T ss_pred             ccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCC
Confidence            334444556655554    55666777542         67788888888776654321    0 1     2 4555677


Q ss_pred             CCcchHHHHHhhcccCCc-----eEEEeC-----CCCHHHHHHhhcCC-----CceEEEEeCCCCCCcccccHHHHHHHH
Q 012296          258 CYRKTRIFIETVLPKMGI-----TATVID-----PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLC  322 (466)
Q Consensus       258 ~y~~t~~~~~~~l~~~Gi-----~v~~vd-----~~Dle~Le~ai~~~-----~tklV~lesP~NPtG~v~dl~~Ia~la  322 (466)
                      .|.+..+..    ...|+     ....+|     ..|+++|+++|++.     .+-+|+.+..+..+|.+-|+++|+++|
T Consensus       238 aH~Sv~KAa----~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~  313 (539)
T PLN02590        238 THSSFRKAC----LIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIA  313 (539)
T ss_pred             chHHHHHHH----HHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHH
Confidence            787755433    33343     333334     24899999998642     245666667777899999999999999


Q ss_pred             HhcCCEEEEeCCCCCCCcccc----ccc---CCcEEEECCccccCccccceeEEEEeCH--HHHHHHHHHHHHh------
Q 012296          323 HKKGAIVCIDGTFATPLNQKA----LSL---GADLVLHSATKFIGGHNDVLAGSISGSG--KLVTQIRNLHHVL------  387 (466)
Q Consensus       323 ~~~gillIvDea~a~~~~~~~----l~~---gaDivv~S~sK~lgg~gdv~gG~ivg~~--eli~~l~~~~~~~------  387 (466)
                      +++|+|++||.+|+......+    +..   .+|-+..++|||+..+-  .+|++..++  .+.+.+......+      
T Consensus       314 ~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~--~cg~llvr~~~~l~~a~~~~~~YL~~~~~~  391 (539)
T PLN02590        314 KKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQ--TCSPLWVKDRYSLIDALKTNPEYLEFKVSK  391 (539)
T ss_pred             HHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCc--CEEEEEecCHHHHHHHhhcCHHHhCCcccc
Confidence            999999999999987543222    112   37999999999999886  457666553  2333332111000      


Q ss_pred             --------------CCCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Q 012296          388 --------------GGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYP  436 (466)
Q Consensus       388 --------------G~~lsp~~a~l~l~--~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yP  436 (466)
                                    +-....+..|+.++  |.+.+..++++..+.++++.+.|+++|.++-+..|
T Consensus       392 ~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~  456 (539)
T PLN02590        392 KDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTR  456 (539)
T ss_pred             cccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Confidence                          11123455676665  56778999999999999999999999877654433

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.48  E-value=4.3e-12  Score=144.76  Aligned_cols=212  Identities=17%  Similarity=0.185  Sum_probs=146.2

Q ss_pred             HHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHH----ccCCC----EEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          212 TVVVEEKMSALEGAESTVIMASGM-SASTVMLLAL----VPAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       212 ~~~Lee~LA~l~g~e~~l~~sSGs-~Ai~~al~al----l~~Gd----~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ..++++.|++++|.+.+-+..+|+ .+..+.+.++    .++||    +|++++..|++....    +...|++++.++.
T Consensus       544 i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~s----a~~~G~~vv~v~~  619 (954)
T PRK05367        544 IDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPAS----AVMAGMKVVVVAC  619 (954)
T ss_pred             HHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHH----HHHCCCEEEEECC
Confidence            456799999999998777777655 5554444333    25665    599999999886643    3456888888764


Q ss_pred             -----CCHHHHHHhhcCC--CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC--CcccccccCCcEEEE
Q 012296          283 -----ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP--LNQKALSLGADLVLH  353 (466)
Q Consensus       283 -----~Dle~Le~ai~~~--~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~--~~~~~l~~gaDivv~  353 (466)
                           .|+++|+++++++  ++.+|++.+|++-.+...|+++|+++||++|+++++|+++...  ....+..+|+|+++.
T Consensus       620 d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~  699 (954)
T PRK05367        620 DENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSHL  699 (954)
T ss_pred             CCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEEEe
Confidence                 3789999999653  4788889898865334478999999999999999999998533  234566889999999


Q ss_pred             CCccccCccccc---eeEEEEeCHHHHHHHHHHH----H---HhCCCc-hHH---------HHHHHHHhhHHHHHHHHHH
Q 012296          354 SATKFIGGHNDV---LAGSISGSGKLVTQIRNLH----H---VLGGAL-NPN---------AAYLIIRGMKTLHLRVQQQ  413 (466)
Q Consensus       354 S~sK~lgg~gdv---~gG~ivg~~eli~~l~~~~----~---~~G~~l-sp~---------~a~l~l~~L~tl~~R~~~~  413 (466)
                      |+||+|+.|-+.   ..|++..++.+...+....    .   ..|... +++         ..|+...|.+.+..+.++.
T Consensus       700 s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~  779 (954)
T PRK05367        700 NLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVA  779 (954)
T ss_pred             cCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence            999998644321   2567777655443332211    0   011111 111         1233344666677777888


Q ss_pred             HHHHHHHHHHHHcC
Q 012296          414 NSTALRMAKILEAH  427 (466)
Q Consensus       414 ~~na~~La~~L~~~  427 (466)
                      ..++.++++.|+++
T Consensus       780 ~~~A~Yl~~~L~~~  793 (954)
T PRK05367        780 ILNANYIAKRLKDH  793 (954)
T ss_pred             HHHHHHHHHHHHhh
Confidence            88999999999876

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.48  E-value=1.5e-12  Score=146.80  Aligned_cols=212  Identities=15%  Similarity=0.134  Sum_probs=147.9

Q ss_pred             HHHHHHHHHhhhCCCcEEEeC-CHHHHHHHHHHHHcc--------CCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          212 TVVVEEKMSALEGAESTVIMA-SGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       212 ~~~Lee~LA~l~g~e~~l~~s-SGs~Ai~~al~all~--------~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ..+++++|++++|.+.+-+.. +|+.|..+.++++..        ..+.|+++...|+.....    +...|++++.++.
T Consensus       532 i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPas----a~~~G~~Vv~V~~  607 (939)
T TIGR00461       532 IAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPAS----AAMAGMQVVPVNC  607 (939)
T ss_pred             HHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHH----HHHCCCEEEEecc
Confidence            456899999999997655554 455665555544432        235799999999776533    4456888887764


Q ss_pred             -----CCHHHHHHhhcC--CCceEEEEeCCCCCCccccc-HHHHHHHHHhcCCEEEEeCCCCC--CCcccccccCCcEEE
Q 012296          283 -----ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD-VKLVSDLCHKKGAIVCIDGTFAT--PLNQKALSLGADLVL  352 (466)
Q Consensus       283 -----~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d-l~~Ia~la~~~gillIvDea~a~--~~~~~~l~~gaDivv  352 (466)
                           .|+++|++++++  .++++|++++|+| +|.+.| +++|+++||++|.++++|.++..  .....|..+|+|+++
T Consensus       608 d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~  686 (939)
T TIGR00461       608 DQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVCH  686 (939)
T ss_pred             CCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCCEEE
Confidence                 389999999974  2599999999999 788877 99999999999999999999744  234566788999999


Q ss_pred             ECCccccCcccc---ceeEEEEeCHHHHHHHHHH--H---------HHhCCC--------chHHHHH--HHHHhhHHHHH
Q 012296          353 HSATKFIGGHND---VLAGSISGSGKLVTQIRNL--H---------HVLGGA--------LNPNAAY--LIIRGMKTLHL  408 (466)
Q Consensus       353 ~S~sK~lgg~gd---v~gG~ivg~~eli~~l~~~--~---------~~~G~~--------lsp~~a~--l~l~~L~tl~~  408 (466)
                      .|.||+|++|..   -..|++.+++++...+-..  .         ...|..        +....+|  +.+.|-+-+..
T Consensus       687 ~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~  766 (939)
T TIGR00461       687 LNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPK  766 (939)
T ss_pred             ecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHHHHH
Confidence            999998773321   1358888887655433210  0         001111        1112333  33445555666


Q ss_pred             HHHHHHHHHHHHHHHHHcCC
Q 012296          409 RVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       409 R~~~~~~na~~La~~L~~~p  428 (466)
                      ..+....|+.++++.|+++.
T Consensus       767 ~a~~ailnAnYl~~rL~~~~  786 (939)
T TIGR00461       767 ASVVAILNANYMATRLKDHY  786 (939)
T ss_pred             HHHHHHHHHHHHHHHhhccC
Confidence            66777889999999998764

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.47  E-value=3.8e-12  Score=130.47  Aligned_cols=237  Identities=17%  Similarity=0.235  Sum_probs=151.3

Q ss_pred             cCCCchhHHHHHHHHHhhh--CCCcEEEeCCHHHHHHHHHHHHc--------cCCCEEEEcCCCCcchHH-HHH------
Q 012296          205 GRYGNPTTVVVEEKMSALE--GAESTVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRKTRI-FIE------  267 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~--g~e~~l~~sSGs~Ai~~al~all--------~~Gd~Vlv~~~~y~~t~~-~~~------  267 (466)
                      ..+.++...+|.++|.++.  +.+.+++.+||++|+..++....        ....+|+.....|++... .+.      
T Consensus        54 ~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~  133 (339)
T PF00202_consen   54 SGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPP  133 (339)
T ss_dssp             TTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTH
T ss_pred             cceeccchhhhhhhhhhccccccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCcc
Confidence            5567888999999999998  44778889999999999987554        234689999999987321 111      


Q ss_pred             --hhcccCCceEEEeCCCCHHH----------HHH---hhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCE
Q 012296          268 --TVLPKMGITATVIDPADMEG----------LEA---ALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAI  328 (466)
Q Consensus       268 --~~l~~~Gi~v~~vd~~Dle~----------Le~---ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gil  328 (466)
                        .........+..++..++..          +++   ....+++.+|++|......|...+    +++|.++|++||++
T Consensus       134 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gil  213 (339)
T PF00202_consen  134 YRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGIL  213 (339)
T ss_dssp             HHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-E
T ss_pred             ccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccc
Confidence              11112222345565555544          222   222334899999998766665542    79999999999999


Q ss_pred             EEEeCCCCCC------CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHh
Q 012296          329 VCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG  402 (466)
Q Consensus       329 lIvDea~a~~------~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~  402 (466)
                      +|+||++...      +........+|+++.  +|.++++  ...|.+++++++.+.+..........-+|..+.+++..
T Consensus       214 lI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~--gK~l~gG--~p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~  289 (339)
T PF00202_consen  214 LIADEVQTGFGRTGKFFASEHYGVDPDIVTF--GKGLGGG--LPISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALAT  289 (339)
T ss_dssp             EEEEETTTTTTTTSSSSGHHHHTSSSSEEEE--EGGGGTT--SSEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHH
T ss_pred             eecccccccccccCCccceecccccCccccc--ccchhhh--hhcccccccchhhccccccccccccccchHhhhhhhhH
Confidence            9999996532      112334456799985  5999986  46788888888887653222111112356666666666


Q ss_pred             hHHHHHH--HHHHHHHHHHHHHHHHc----CCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEec
Q 012296          403 MKTLHLR--VQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVL  463 (466)
Q Consensus       403 L~tl~~R--~~~~~~na~~La~~L~~----~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~  463 (466)
                      |+.++..  .++..+...++.+.|++    ++.|..|                  +|.|.|++||++
T Consensus       290 l~~~~~~~~~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rg~Gl~~~ie~~  338 (339)
T PF00202_consen  290 LEILEEEDLLERVRELGERLREGLRELAARYPLIGEV------------------RGIGLMIGIELV  338 (339)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTTEEEE------------------EEETTEEEEEES
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------eeeCeEEEEEEE
Confidence            6554432  33333344444444432    3666555                  789999999985

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.47  E-value=8.4e-13  Score=127.00  Aligned_cols=220  Identities=11%  Similarity=0.123  Sum_probs=158.1

Q ss_pred             CchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCC-CEEEEcCCCCcchHHHHHhhcccCCceEEEeCC--
Q 012296          208 GNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~G-d~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--  282 (466)
                      ++|...++...++.--+. .+.++++-|+ +.|.++++..+.|| ++|+...|+|....    --+...++++..++.  
T Consensus        67 ~d~rnk~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~----v~A~iNd~eVvkvpl~p  142 (375)
T KOG0633|consen   67 PDPRNKRLSDALAQDKPLTSDNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYV----VDAAINDAEVVKVPLNP  142 (375)
T ss_pred             CCcccchhhhhcccCCCCCccceEEecCcHHHHHHHHhheecCCccceeecCCcceeEE----EEeecCCceEEEecCCC
Confidence            344445566655554333 5788899999 89999999999999 89999999997632    123445677766642  


Q ss_pred             ---CCHHHHHHhhcCC-CceEEEEeCCCCCCcccccHHHHHHHHHhc-CCEEEEeCCCCCCCc-ccc----cccCCcEEE
Q 012296          283 ---ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKK-GAIVCIDGTFATPLN-QKA----LSLGADLVL  352 (466)
Q Consensus       283 ---~Dle~Le~ai~~~-~tklV~lesP~NPtG~v~dl~~Ia~la~~~-gillIvDea~a~~~~-~~~----l~~gaDivv  352 (466)
                         .+.|++.+.+..+ .+|++|+++|+||||.....+.|.++.+.. +.++++||+|-.+.. ...    .++..-+++
T Consensus       143 dF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivl  222 (375)
T KOG0633|consen  143 DFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVL  222 (375)
T ss_pred             CccccHHHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeeh
Confidence               2678888877644 589999999999999999888888888653 689999999754322 111    123445889


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCc-hHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL-NPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPK  429 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~l-sp~~a~l~l~--~L~tl~~R~~~~~~na~~La~~L~~~p~  429 (466)
                      .++||.+|-.| ++.|+-..+.++.+.+.+....+.... ....|..++.  .++.++.-.+.+.+.+.+|.+.|.+.|.
T Consensus       223 qTlSKsfGLAG-iRvG~~~~~~~ia~iln~~KaPYNiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~  301 (375)
T KOG0633|consen  223 QTLSKSFGLAG-IRVGYGAFPLSIAEILNRAKAPYNISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPF  301 (375)
T ss_pred             hhhhhhcCcce-eEeecccccHHHHHHHHhccCCccccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            99999999887 567888888888888877665554322 2223333332  4556666667778888999999999988


Q ss_pred             eEE
Q 012296          430 VKR  432 (466)
Q Consensus       430 V~~  432 (466)
                      +..
T Consensus       302 ~~~  304 (375)
T KOG0633|consen  302 LND  304 (375)
T ss_pred             ccC
Confidence            765

>PRK12403 putative aminotransferase; Provisional

Probab=99.46  E-value=2.6e-11  Score=129.20  Aligned_cols=235  Identities=18%  Similarity=0.218  Sum_probs=143.6

Q ss_pred             CchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHc-------cCCCE-EEEcCCCCcch-HHHHHhh-c---cc
Q 012296          208 GNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV-------PAGGH-IVTTTDCYRKT-RIFIETV-L---PK  272 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g--~e~~l~~sSGs~Ai~~al~all-------~~Gd~-Vlv~~~~y~~t-~~~~~~~-l---~~  272 (466)
                      .++...+|.++|+++.+  .+.+++++||++|+..++....       ++++. |+.....|++. ...+... .   ..
T Consensus        96 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~  175 (460)
T PRK12403         96 THPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHE  175 (460)
T ss_pred             CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccc
Confidence            46778899999999986  3678899999999999988653       12333 55556667663 2221100 0   00


Q ss_pred             CC---ceEEEeCCC-----------------CHHHHHHhhc---CCCceEEEEeCCCCCCccccc----HHHHHHHHHhc
Q 012296          273 MG---ITATVIDPA-----------------DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKK  325 (466)
Q Consensus       273 ~G---i~v~~vd~~-----------------Dle~Le~ai~---~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~  325 (466)
                      .+   -.+..++..                 +.+++++.+.   ..++.+|++|......|.+.+    +++|.++|++|
T Consensus       176 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~  255 (460)
T PRK12403        176 MGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQY  255 (460)
T ss_pred             cCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc
Confidence            00   012222210                 1245655552   134789999998877787776    99999999999


Q ss_pred             CCEEEEeCCCCCC------CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH--HhCC--CchHHH
Q 012296          326 GAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGG--ALNPNA  395 (466)
Q Consensus       326 gillIvDea~a~~------~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--~~G~--~lsp~~  395 (466)
                      |+++|+||++...      +.......-.||++  ++|.++++- +..|.+++++++++.+.....  ..+.  ..+|..
T Consensus       256 g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~--~gK~lggG~-~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~  332 (460)
T PRK12403        256 DVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLS--IAKGLTSGY-VPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVA  332 (460)
T ss_pred             CCEEEEeccccCCCcCchhhhhhhcCCCCCeEE--Ecccccccc-cceEEEEECHHHHHHHhcCCCccccCCCCCCCHHH
Confidence            9999999996431      11122233468887  899998751 234666688888877643111  1222  246777


Q ss_pred             HHHHHHhhHHHHH--HHHHHH-HHHHHHHHHHH----cCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEec
Q 012296          396 AYLIIRGMKTLHL--RVQQQN-STALRMAKILE----AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVL  463 (466)
Q Consensus       396 a~l~l~~L~tl~~--R~~~~~-~na~~La~~L~----~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~  463 (466)
                      +..++..|+.++.  .+++.. ++.+++.+.|+    ++|.|..|                  +|.|.|+++++.
T Consensus       333 ~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rG~Gl~~gie~~  389 (460)
T PRK12403        333 AAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEV------------------QGAGLVAALQFA  389 (460)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEeE------------------eecceEEEEEEc
Confidence            7777766666542  234443 45555555554    34555444                  567777777764

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.45  E-value=6.8e-12  Score=132.36  Aligned_cols=215  Identities=19%  Similarity=0.224  Sum_probs=140.4

Q ss_pred             CCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHHHcc--CCCEEEEcCCCCcchHHHHHhh-------cc--c-C
Q 012296          207 YGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETV-------LP--K-M  273 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~-g~e~~l~~sSGs~Ai~~al~all~--~Gd~Vlv~~~~y~~t~~~~~~~-------l~--~-~  273 (466)
                      +.++....|.++|+++. +.+.+++++||++|+..++.....  .+++||..++.|++........       ..  . -
T Consensus        87 ~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~  166 (426)
T PRK00062         87 APTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSP  166 (426)
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCC
Confidence            35677788999999876 456788889999999999886543  3678999999999854222111       00  0 0


Q ss_pred             Cc------eEEEeCCCCHHHHHHhhcC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCc-
Q 012296          274 GI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN-  340 (466)
Q Consensus       274 Gi------~v~~vd~~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~~-  340 (466)
                      +.      ....++..|++++++.++.  .++++|++|.....+|.+.+    +++|.++|++||+++|+||++...-. 
T Consensus       167 ~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g  246 (426)
T PRK00062        167 GVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVA  246 (426)
T ss_pred             CCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccC
Confidence            11      1223344688999888853  24889999977666888887    89999999999999999999753211 


Q ss_pred             ----ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH-HhC--CCchHHHHHHHHHhhHHHHH--HHH
Q 012296          341 ----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLG--GALNPNAAYLIIRGMKTLHL--RVQ  411 (466)
Q Consensus       341 ----~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~-~~G--~~lsp~~a~l~l~~L~tl~~--R~~  411 (466)
                          ........|+  .+++|.++++  ...|++++++++++.+..... ..+  ...+|..+..++..|+.+..  .++
T Consensus       247 ~~~~~~~~~~~pDi--~~~gK~l~~G--~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~  322 (426)
T PRK00062        247 LGGAQGYYGVTPDL--TTLGKIIGGG--LPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYE  322 (426)
T ss_pred             CccHHHHhCCCcch--HhhhhHhhCC--CcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHH
Confidence                1111222464  5689999853  246778889998888752211 111  23456666666666665543  444


Q ss_pred             HHHHHHHHHHHHHH
Q 012296          412 QQNSTALRMAKILE  425 (466)
Q Consensus       412 ~~~~na~~La~~L~  425 (466)
                      +..+..+.+.+.|+
T Consensus       323 ~~~~~~~~~~~~l~  336 (426)
T PRK00062        323 ELEALTKRLAEGLK  336 (426)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555555554

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.45  E-value=5.5e-12  Score=129.88  Aligned_cols=205  Identities=11%  Similarity=0.068  Sum_probs=134.2

Q ss_pred             hhHHHHHHHHHhhhCC--Cc-EEEeCC-HHHHHHHHHHHHcc---CCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          210 PTTVVVEEKMSALEGA--ES-TVIMAS-GMSASTVMLLALVP---AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~--e~-~l~~sS-Gs~Ai~~al~all~---~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ...++.++.+++++++  ++ ++++++ ||.++++++.+++.   +||+|++  ..|..  + +...+++.|+++++++.
T Consensus        44 ~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~--g~~~~--~-~~~~a~~~g~~~~~~~~  118 (355)
T cd00611          44 AIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVT--GAWSA--K-AAKEAKRYGGVVVIVAA  118 (355)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEEC--CHHHH--H-HHHHHHhcCCCcEEEec
Confidence            4577889999999996  23 555545 78999999999987   5666655  12211  1 12345677888777653


Q ss_pred             C------C-HHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEEC
Q 012296          283 A------D-MEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHS  354 (466)
Q Consensus       283 ~------D-le~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S  354 (466)
                      .      + ++..+..+++ ++++|.+.+..|.||...+     ++++.+|+++++|.+.+.+. ..+..+++  +++.|
T Consensus       119 ~~~g~~~~~~~~~~~~~~~-~~~lV~~~h~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~~idv~~~~--~~~ss  190 (355)
T cd00611         119 KEEGKYTKIPDVETWDLAP-DAAYVHYCSNETIHGVEFD-----EVPDTGGVPLVADMSSNILSRPIDVSKFG--VIYAG  190 (355)
T ss_pred             ccccCCCCCCCHhhcCCCC-CCCEEEEeCCcccccEEcc-----eecccCCCeEEEEccccccCCCCCHHHhC--EEEee
Confidence            2      3 3333344555 4999999999999999743     45556999999999976543 34444443  66677


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHH-------HH--Hh---CCCchHHHHHHHHHhhHH------HHHHHHHHHHH
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNL-------HH--VL---GGALNPNAAYLIIRGMKT------LHLRVQQQNST  416 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~-------~~--~~---G~~lsp~~a~l~l~~L~t------l~~R~~~~~~n  416 (466)
                      .+|+||++|   .|+++.++++++++...       ..  ..   .++++....+.+..+++.      ++.+.+++++.
T Consensus       191 ~~K~lGP~G---~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l  267 (355)
T cd00611         191 AQKNLGPAG---VTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQK  267 (355)
T ss_pred             cccccCCCc---eEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999998765   68888888887664421       10  00   123333333333334443      44456677888


Q ss_pred             HHHHHHHHHcCCCe
Q 012296          417 ALRMAKILEAHPKV  430 (466)
Q Consensus       417 a~~La~~L~~~p~V  430 (466)
                      ++.+.++|++.|++
T Consensus       268 ~~~l~~~l~~~~gl  281 (355)
T cd00611         268 AQLLYDTIDNSNGF  281 (355)
T ss_pred             HHHHHHHHHhCccc
Confidence            99999999998763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.45  E-value=3.3e-12  Score=132.60  Aligned_cols=225  Identities=18%  Similarity=0.222  Sum_probs=146.0

Q ss_pred             CchhHHHHHH----HHHhhhCCC---------cEEEeCCHHHHHHHHHHHHcc--------CC-----C-EEEEcCCCCc
Q 012296          208 GNPTTVVVEE----KMSALEGAE---------STVIMASGMSASTVMLLALVP--------AG-----G-HIVTTTDCYR  260 (466)
Q Consensus       208 ~np~~~~Lee----~LA~l~g~e---------~~l~~sSGs~Ai~~al~all~--------~G-----d-~Vlv~~~~y~  260 (466)
                      ..|...++|+    .+++++|.+         ..+++++|++++..++.+...        .|     + .|++++..|.
T Consensus        73 ~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~  152 (373)
T PF00282_consen   73 ASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHY  152 (373)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-T
T ss_pred             cccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccccc
Confidence            4566666655    455666765         478888898888777654321        12     2 5777777887


Q ss_pred             chHHHHHhhcccCCceEEEeCC-----CCHHHHHHhhcCC----C-ceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEE
Q 012296          261 KTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNN----N-VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC  330 (466)
Q Consensus       261 ~t~~~~~~~l~~~Gi~v~~vd~-----~Dle~Le~ai~~~----~-tklV~lesP~NPtG~v~dl~~Ia~la~~~gillI  330 (466)
                      +..    +.+..+|+.++.++.     .|+++|+++|++.    . +-+|+....+..+|.+-|+++|+++|++++++++
T Consensus       153 S~~----Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlH  228 (373)
T PF00282_consen  153 SIE----KAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLH  228 (373)
T ss_dssp             HHH----HHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEE
T ss_pred             HHH----HhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeee
Confidence            755    344556776666643     3788888887532    1 2356666777889999999999999999999999


Q ss_pred             EeCCCCCCCcc----cccc---cCCcEEEECCccccCccccceeEEEEeCH-HHHHHHH----HHHH-------------
Q 012296          331 IDGTFATPLNQ----KALS---LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIR----NLHH-------------  385 (466)
Q Consensus       331 vDea~a~~~~~----~~l~---~gaDivv~S~sK~lgg~gdv~gG~ivg~~-eli~~l~----~~~~-------------  385 (466)
                      ||++|+.....    +...   ..+|-+..++||+++.+-  .+|++..++ ..+....    .+..             
T Consensus       229 VDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~--~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~  306 (373)
T PF00282_consen  229 VDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPY--GCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYG  306 (373)
T ss_dssp             EEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SS--S-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEE
T ss_pred             ecccccccccccccccccccccccccccccchhhhhcCCc--cceeEEeecccchHHHhccChhhhcccccccccccccc
Confidence            99999873322    1111   247999999999999886  457766554 4333211    0000             


Q ss_pred             HhC--C--CchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCC
Q 012296          386 VLG--G--ALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL  438 (466)
Q Consensus       386 ~~G--~--~lsp~~a~l~l~--~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl  438 (466)
                      ..+  +  ....+..|+.++  |.+.+..++++..+++++++++|+++|.++.+.-|.+
T Consensus       307 ~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~  365 (373)
T PF00282_consen  307 DYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDL  365 (373)
T ss_dssp             EGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSS
T ss_pred             cccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCc
Confidence            000  1  123355666654  6778899999999999999999999999876665554

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=99.45  E-value=1.8e-13  Score=138.98  Aligned_cols=210  Identities=21%  Similarity=0.274  Sum_probs=51.0

Q ss_pred             HHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCC---CcchHHHHHhhcccCCceEEEeCC---CCHHH
Q 012296          214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDC---YRKTRIFIETVLPKMGITATVIDP---ADMEG  287 (466)
Q Consensus       214 ~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~---y~~t~~~~~~~l~~~Gi~v~~vd~---~Dle~  287 (466)
                      .+++.++.+.|+++++++++..+|+.+++.++. +|.+||++...   +++..+. ..++...|..++.|..   ..+++
T Consensus        51 ~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la-~~~EvIvsRGelVeiGgsFRi-p~vm~~sGa~lvEVGttN~t~~~D  128 (367)
T PF03841_consen   51 HVEELLCELTGAEAALVVNNNAAAVLLALNTLA-KGKEVIVSRGELVEIGGSFRI-PDVMRQSGARLVEVGTTNRTHLSD  128 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence            578889999999999999999999999888775 57788887643   3443332 2455556766555543   35889


Q ss_pred             HHHhhcCCCceEEEEeCCCCCC--cc--cccHHHHHHHHHhcCCEEEEeCCCCC------------CCcccccccCCcEE
Q 012296          288 LEAALNNNNVSLFFTESPTNPF--LR--CVDVKLVSDLCHKKGAIVCIDGTFAT------------PLNQKALSLGADLV  351 (466)
Q Consensus       288 Le~ai~~~~tklV~lesP~NPt--G~--v~dl~~Ia~la~~~gillIvDea~a~------------~~~~~~l~~gaDiv  351 (466)
                      ++++|+++ |.+|+--+++|..  |.  -.+++++++++|+||+++++|..-+.            +.....++.|+|+|
T Consensus       129 ye~AI~e~-Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV  207 (367)
T PF03841_consen  129 YEKAITEN-TAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLV  207 (367)
T ss_dssp             ---------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEE
T ss_pred             cccccccc-ccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEE
Confidence            99999986 8888777888863  32  34899999999999999999987411            22234467899999


Q ss_pred             EECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh----------------HHHHHHHHHHHH
Q 012296          352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----------------KTLHLRVQQQNS  415 (466)
Q Consensus       352 v~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L----------------~tl~~R~~~~~~  415 (466)
                      ++|..|.+|||.   +|+|+|++++++++++....-..-.+-.....+...|                +.+....+.+.+
T Consensus       208 ~fSGdKlLGGPQ---aGiI~Gkk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~  284 (367)
T PF03841_consen  208 TFSGDKLLGGPQ---AGIIVGKKELIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRA  284 (367)
T ss_dssp             EEETTSSSSS-S----EEEEEEHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH--------------------------
T ss_pred             EEECCCcCCCCC---eEEEEeCHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhccccccccccccccccccccc
Confidence            999999999995   8999999999999986442222222222111111111                123334455666


Q ss_pred             HHHHHHHHHHcCCC
Q 012296          416 TALRMAKILEAHPK  429 (466)
Q Consensus       416 na~~La~~L~~~p~  429 (466)
                      .+++|.+.|+....
T Consensus       285 rA~~l~~~l~~~~~  298 (367)
T PF03841_consen  285 RAERLAAQLKAALG  298 (367)
T ss_dssp             --------------
T ss_pred             cccccccccccccc
Confidence            77777777776543

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.45  E-value=2e-11  Score=128.63  Aligned_cols=219  Identities=13%  Similarity=0.158  Sum_probs=139.2

Q ss_pred             CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------C-CCEEEEcCCCCcchHHHHHhhccc---
Q 012296          206 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVLPK---  272 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g--~e~~l~~sSGs~Ai~~al~all~-------~-Gd~Vlv~~~~y~~t~~~~~~~l~~---  272 (466)
                      .+.++...+|.++|+++..  .+.+.+++||++|+..+++....       + ..+||.....|++...........   
T Consensus        81 ~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~  160 (423)
T PRK05964         81 GFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGM  160 (423)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccc
Confidence            4567778889999999874  46788889999999998875421       2 357888888888843222111000   


Q ss_pred             ------CCceEEEeC--CCC-----HHHHHHhhcC--CCceEEEEeC-CCCCCccccc----HHHHHHHHHhcCCEEEEe
Q 012296          273 ------MGITATVID--PAD-----MEGLEAALNN--NNVSLFFTES-PTNPFLRCVD----VKLVSDLCHKKGAIVCID  332 (466)
Q Consensus       273 ------~Gi~v~~vd--~~D-----le~Le~ai~~--~~tklV~les-P~NPtG~v~d----l~~Ia~la~~~gillIvD  332 (466)
                            ....+..++  ..|     ++++++.+++  .++.+|++|. +.+..|...+    +++|.++|++||+++|+|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~D  240 (423)
T PRK05964        161 HALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFD  240 (423)
T ss_pred             cccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence                  001122232  234     7888888852  2478999987 5666776653    899999999999999999


Q ss_pred             CCCCCCC------cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHH---H-HHhCC--CchHHHHHHHH
Q 012296          333 GTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL---H-HVLGG--ALNPNAAYLII  400 (466)
Q Consensus       333 ea~a~~~------~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~---~-~~~G~--~lsp~~a~l~l  400 (466)
                      |++....      ........+|+++  ++|+++++. ...|++++++++++.+...   . ...+.  ..+|..+..++
T Consensus       241 Ev~tg~gr~G~~~a~~~~~v~pDi~~--~~K~l~gG~-~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~  317 (423)
T PRK05964        241 EIATGFGRTGTLFACEQAGVSPDIMC--LSKGLTGGY-LPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAAN  317 (423)
T ss_pred             chhhCCCcCcchhHHHhcCCCCCeee--eehhhhcCc-ccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHH
Confidence            9974321      1112223467764  679997653 2467788999998877531   1 11222  24566665555


Q ss_pred             HhhHHHH--HHHHHHHHHHHHHHHHHHcC
Q 012296          401 RGMKTLH--LRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       401 ~~L~tl~--~R~~~~~~na~~La~~L~~~  427 (466)
                      ..++.+.  ..+++..+..+.+.+.|++.
T Consensus       318 a~l~~l~~~~~~~~~~~~g~~l~~~l~~l  346 (423)
T PRK05964        318 ASLDLFEDEPVLERVAALSAGLAEGLEPF  346 (423)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Confidence            5555443  24555666666777766643

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.45  E-value=3.5e-11  Score=127.63  Aligned_cols=222  Identities=15%  Similarity=0.166  Sum_probs=136.1

Q ss_pred             CchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchH-HHHHhh-c----c-cCC--
Q 012296          208 GNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTR-IFIETV-L----P-KMG--  274 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~-~~~~~~-l----~-~~G--  274 (466)
                      .++...+|.++|.++.+.  +.+.+++||++|+..++....  ....+|+.....|++.. ..+... .    . .++  
T Consensus        82 ~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~  161 (443)
T PRK08360         82 FPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGEL  161 (443)
T ss_pred             CcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCC
Confidence            467778888889988754  567788999999999887542  23457888777777732 211100 0    0 011  


Q ss_pred             ceEEEeCC-----------------CCHHHHHHhhc----CCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEE
Q 012296          275 ITATVIDP-----------------ADMEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIV  329 (466)
Q Consensus       275 i~v~~vd~-----------------~Dle~Le~ai~----~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gill  329 (466)
                      ..+.+++.                 .+++.+++.++    ..++++|++|...|++|.+.+    +++|.++|++||+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~ll  241 (443)
T PRK08360        162 SDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILL  241 (443)
T ss_pred             CCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence            01222211                 12344556663    235899999987799998775    889999999999999


Q ss_pred             EEeCCCCCCCc-c-----cccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh
Q 012296          330 CIDGTFATPLN-Q-----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM  403 (466)
Q Consensus       330 IvDea~a~~~~-~-----~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L  403 (466)
                      |+||++..... .     .......|++  +++|.+++ | ...|++++++++++.+...........+|..+..++..+
T Consensus       242 I~DEv~~g~gr~G~~~a~~~~~~~pDii--tlsK~l~~-G-~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l  317 (443)
T PRK08360        242 VVDEVQSGLGRTGKWFAIEHFGVEPDII--TLGKPLGG-G-LPISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVI  317 (443)
T ss_pred             EEeccccCCCcCccchhhhhcCCCCCEE--EecccccC-C-ceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHH
Confidence            99999764211 1     1112335766  57999995 4 467889999999888754322222234565555555555


Q ss_pred             HHHHH--HHHHHHHHHHHHHHHHH----cCCCeEEE
Q 012296          404 KTLHL--RVQQQNSTALRMAKILE----AHPKVKRV  433 (466)
Q Consensus       404 ~tl~~--R~~~~~~na~~La~~L~----~~p~V~~V  433 (466)
                      +.+..  .+++..+..+++.+.|+    ++|.+..|
T Consensus       318 ~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~v  353 (443)
T PRK08360        318 EEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDV  353 (443)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCeeee
Confidence            55432  23444444444544444    34544444

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.44  E-value=2.8e-11  Score=128.43  Aligned_cols=224  Identities=15%  Similarity=0.156  Sum_probs=138.1

Q ss_pred             CCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhc-------ccCC
Q 012296          207 YGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL-------PKMG  274 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l-------~~~G  274 (466)
                      +.++...+|.++|+++...   +.+.+++||++|+..++....  ....+||..+..|++........-       ..++
T Consensus        82 ~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~  161 (445)
T PRK08593         82 MYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYG  161 (445)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCC
Confidence            5678889999999998753   356677999999999887432  223568888888887432111100       0010


Q ss_pred             ---ceEEEeCCC----------C-------HHHHHHhhc----CCCceEEEEeCCCCCCccccc----HHHHHHHHHhcC
Q 012296          275 ---ITATVIDPA----------D-------MEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKG  326 (466)
Q Consensus       275 ---i~v~~vd~~----------D-------le~Le~ai~----~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~g  326 (466)
                         ..+..++..          +       ++++++.+.    ..++.+|++|.+.+..|.+.+    +++|.++|++||
T Consensus       162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g  241 (445)
T PRK08593        162 PLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHG  241 (445)
T ss_pred             CCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence               112222211          1       144554442    234899999999887787766    899999999999


Q ss_pred             CEEEEeCCCCCC-Cc-----ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 012296          327 AIVCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII  400 (466)
Q Consensus       327 illIvDea~a~~-~~-----~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l  400 (466)
                      +++|+||++... -.     ........|++  +++|.++++  ..+|++++++++++.+......+....+|..+..++
T Consensus       242 ~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~--t~gK~l~~G--~p~gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~  317 (445)
T PRK08593        242 ILFAVDDIQQGLGRTGKWSSISHFNITPDLM--SFGKSLAGG--MPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAAL  317 (445)
T ss_pred             CEEEEechhhCCCcCchHHHHHhcCCCCCEe--eecccccCC--cccEEEEEcHHHHhhhccCCCCCCCCCCHHHHHHHH
Confidence            999999996432 11     11122235766  579999864  357889999999887753222222334666666555


Q ss_pred             HhhHHHHH--HHHHHHHHHHHHHHHHH----cCCCeEEEe
Q 012296          401 RGMKTLHL--RVQQQNSTALRMAKILE----AHPKVKRVH  434 (466)
Q Consensus       401 ~~L~tl~~--R~~~~~~na~~La~~L~----~~p~V~~V~  434 (466)
                      ..++.++.  .+++..+..+.+.+.|+    ++|.|..|+
T Consensus       318 a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vr  357 (445)
T PRK08593        318 ATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGDVR  357 (445)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence            55555432  33444445555555554    356555553

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.44  E-value=1.2e-11  Score=130.68  Aligned_cols=219  Identities=15%  Similarity=0.112  Sum_probs=134.8

Q ss_pred             CCCchhHHHHHHHHHhhh-CC-CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchH-HHHHhhc-----cc-CC
Q 012296          206 RYGNPTTVVVEEKMSALE-GA-ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTR-IFIETVL-----PK-MG  274 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~-g~-e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~-~~~~~~l-----~~-~G  274 (466)
                      .+.++...+|.++|+++. +. +..++.+||++|+..++....  ....+|+..+..|++.. ..+....     .. ++
T Consensus        82 ~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~  161 (433)
T PRK08117         82 VIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQ  161 (433)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCC
Confidence            456788899999999998 33 455566899999999887432  23357888888787732 2111000     00 00


Q ss_pred             ---ceEEEeCC-----------------CCHHHHHHhhc----CCCceEEEEeCCCCCCccccc----HHHHHHHHHhcC
Q 012296          275 ---ITATVIDP-----------------ADMEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKG  326 (466)
Q Consensus       275 ---i~v~~vd~-----------------~Dle~Le~ai~----~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~g  326 (466)
                         -.+..++.                 .+++++++.++    ..++.+|++|......|.+.+    +++|.++|++||
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g  241 (433)
T PRK08117        162 PLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHG  241 (433)
T ss_pred             CCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcC
Confidence               01112211                 14556666654    235889999998888888887    999999999999


Q ss_pred             CEEEEeCCCCCCCc-ccc---cccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHh
Q 012296          327 AIVCIDGTFATPLN-QKA---LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG  402 (466)
Q Consensus       327 illIvDea~a~~~~-~~~---l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~  402 (466)
                      +++|+||++..... ...   ..+|.+.-+.+++|.+++ | ...|++++++++++.+...........+|..+.+++..
T Consensus       242 ~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg~-G-~pigav~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~  319 (433)
T PRK08117        242 ILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIAS-G-LPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALAT  319 (433)
T ss_pred             CEEEEecchhccCccccchhHhhcCCCCCEeehhhhccC-C-CcceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHH
Confidence            99999999764211 011   122332223579999985 3 45788899999888764322111123366666666666


Q ss_pred             hHHHH--HHHHHHHHHHHHHHHHHHc
Q 012296          403 MKTLH--LRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       403 L~tl~--~R~~~~~~na~~La~~L~~  426 (466)
                      ++.+.  ..+++..++.+++.+.|++
T Consensus       320 L~~l~~~~l~~~~~~~g~~l~~~L~~  345 (433)
T PRK08117        320 LEVIKEEKLLDNANEMGAYALERLEV  345 (433)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            66542  2234444445555555543

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.44  E-value=1.5e-12  Score=127.08  Aligned_cols=211  Identities=18%  Similarity=0.248  Sum_probs=150.8

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHH-
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME-  286 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle-  286 (466)
                      .......||.+||++.+.|++++++++-.|+..++-+++.|.|.|+.+...|.+...-++ +.++++    .+|..|++ 
T Consensus       110 tq~iHk~LE~kiAqfh~rED~ilypscfdANag~feail~pedAvfSDeLNhASIIdGir-Lckry~----h~dv~~l~~  184 (417)
T KOG1359|consen  110 TQDIHKLLESKIAQFHGREDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIR-LCKRYR----HVDVFDLEH  184 (417)
T ss_pred             chHHHHHHHHHHHHHhCCCceEEeccccccchHHHHHhcChhhhhhccccccchhhhhhH-HHhhhc----cchhHHHHH
Confidence            345678899999999999999999999999999999999999999988888877655442 233332    23333333 


Q ss_pred             HHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccc-------c--ccCCcEEEECCcc
Q 012296          287 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA-------L--SLGADLVLHSATK  357 (466)
Q Consensus       287 ~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~-------l--~~gaDivv~S~sK  357 (466)
                      .+.++.+- +.++|.....-...|.+.|+++|.+++++||.++++||++++++.-.-       +  ...+|++..+++|
T Consensus       185 ~l~~a~k~-r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgK  263 (417)
T KOG1359|consen  185 CLISACKM-RLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGK  263 (417)
T ss_pred             HHHHhhhh-eEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhh
Confidence            23333333 478999999989999999999999999999999999999888654211       1  1236899999999


Q ss_pred             ccCccccceeEEEEeCHHHHHHHHHHHH--HhCCCchHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          358 FIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRG---MKTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       358 ~lgg~gdv~gG~ivg~~eli~~l~~~~~--~~G~~lsp~~a~l~l~~---L~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      .+||..   ||+..++++|++-++...+  .+...++|...-.+...   +-.-...+++.+.+.+++.++.+..
T Consensus       264 AlGga~---GGyttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~a  335 (417)
T KOG1359|consen  264 ALGGAS---GGYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAA  335 (417)
T ss_pred             hhcCCC---CCCccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence            999874   8999999999998876433  34555554321111111   1111223445566777777776654

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.44  E-value=1.4e-11  Score=131.25  Aligned_cols=217  Identities=13%  Similarity=0.159  Sum_probs=138.9

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc--c--CC-CEEEEcCCCCcchHHHHHhhc-----c---
Q 012296          207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--P--AG-GHIVTTTDCYRKTRIFIETVL-----P---  271 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all--~--~G-d~Vlv~~~~y~~t~~~~~~~l-----~---  271 (466)
                      +.++...+|.++|+++...  +.+.+++||++|+..++....  .  +| .+||.....|++........-     .   
T Consensus       121 ~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~  200 (459)
T PRK11522        121 LLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPF  200 (459)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCC
Confidence            3578888899999998653  567888999999999887442  1  22 368888888887322111110     0   


Q ss_pred             -cCCceEEEeCCCCHHHHHHhhcC-----CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC---
Q 012296          272 -KMGITATVIDPADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP---  338 (466)
Q Consensus       272 -~~Gi~v~~vd~~Dle~Le~ai~~-----~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~---  338 (466)
                       ...-.+..++..|.+++++.++.     .++.+|++|......|.+.+    +++|.++|++||+++|+||++.+.   
T Consensus       201 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRt  280 (459)
T PRK11522        201 MPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRT  280 (459)
T ss_pred             CCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCcc
Confidence             00012334555678888887752     24789999998877788777    999999999999999999996421   


Q ss_pred             ---CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHhhHHHHH--HHH
Q 012296          339 ---LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHL--RVQ  411 (466)
Q Consensus       339 ---~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~l--sp~~a~l~l~~L~tl~~--R~~  411 (466)
                         +.........|++  +++|.++++- +..|.+++++++++.+.......+.+.  +|..+..++..|+.+..  .++
T Consensus       281 G~~~a~e~~gv~PDiv--t~gK~lggG~-~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~  357 (459)
T PRK11522        281 GKMFACEHENVQPDIL--CLAKALGGGV-MPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPA  357 (459)
T ss_pred             chhhhhhccCCCCCEE--EechhhhCCC-ccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHH
Confidence               0111222346877  5799998741 125666777888776532111233333  67766666666665532  344


Q ss_pred             HHHHHHHHHHHHHHc
Q 012296          412 QQNSTALRMAKILEA  426 (466)
Q Consensus       412 ~~~~na~~La~~L~~  426 (466)
                      +..+..+++.+.|++
T Consensus       358 ~~~~~g~~l~~~L~~  372 (459)
T PRK11522        358 QAEQKGDYLLDGFRQ  372 (459)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            455555556555553

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.43  E-value=3.4e-12  Score=140.50  Aligned_cols=212  Identities=12%  Similarity=0.138  Sum_probs=145.1

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC----
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----  283 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~----  283 (466)
                      .....+.|+..|+++|+++..++++|+ .++.+++++++++||.||+++++|.+.+..    +...|+..+|+.+.    
T Consensus       194 ~G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~ha----Lilsga~PVYl~P~rn~~  269 (714)
T PRK15400        194 SGPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHL----MMMSDVTPIYFRPTRNAY  269 (714)
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHH----HHHcCCeEEEeccccccc
Confidence            445678899999999999999999998 889999999999999999999999987643    44557777776422    


Q ss_pred             ------C-----HHHHHHhhcCCC-ce---EEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-------c
Q 012296          284 ------D-----MEGLEAALNNNN-VS---LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-------Q  341 (466)
Q Consensus       284 ------D-----le~Le~ai~~~~-tk---lV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-------~  341 (466)
                            +     .+.|+++|+.++ .+   .+++.+|+ ..|.++|++.|+++|+.++  +++||||+....       .
T Consensus       270 Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pT-YdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~  346 (714)
T PRK15400        270 GILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNST-YDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGK  346 (714)
T ss_pred             CCccCCCccccCHHHHHHHHHhCccccCccEEEEECCC-CccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCc
Confidence                  3     788998886541 23   78888885 6899999999999999887  689999876432       2


Q ss_pred             cccccCC---c--EEEECCccccCccccceeEEEEeCHHHH-HHHHHHHHHhCCCchHHHHHHH----HHhhH--HHHHH
Q 012296          342 KALSLGA---D--LVLHSATKFIGGHNDVLAGSISGSGKLV-TQIRNLHHVLGGALNPNAAYLI----IRGMK--TLHLR  409 (466)
Q Consensus       342 ~~l~~ga---D--ivv~S~sK~lgg~gdv~gG~ivg~~eli-~~l~~~~~~~G~~lsp~~a~l~----l~~L~--tl~~R  409 (466)
                      .++..|+   |  +++.|.||.+++.+  .+.+|..+..+- ++++.....+..+.+...-.+.    .+.++  .-...
T Consensus       347 sam~~ga~~~~~i~vtQStHKtL~alT--QaS~LHvkg~vd~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m~~~~G~~l  424 (714)
T PRK15400        347 CGMSGGRVEGKVIYETQSTHKLLAAFS--QASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRL  424 (714)
T ss_pred             ChhhcCCCCCCceEEEEchhhcccchh--HHhHHHHcCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHH
Confidence            2344566   5  99999999999876  455554433221 3455444444433221111110    11111  11223


Q ss_pred             HHHHHHHHHHHHHHHHcCCC
Q 012296          410 VQQQNSTALRMAKILEAHPK  429 (466)
Q Consensus       410 ~~~~~~na~~La~~L~~~p~  429 (466)
                      +++..+.+..+.+.|.+.+.
T Consensus       425 ~~~~i~~a~~~R~~l~~~~~  444 (714)
T PRK15400        425 INGSIERAIKFRKEIKRLRT  444 (714)
T ss_pred             HHHHHHHHHHHHHHHHhCCC
Confidence            44556666677777766554

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.43  E-value=9.1e-12  Score=137.19  Aligned_cols=172  Identities=13%  Similarity=0.150  Sum_probs=129.2

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC----
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----  283 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~----  283 (466)
                      .....+.|+..|+++|+++..++++|+ .++.+++++++++||.||+++++|.+.+..    +...|+..+|+.+.    
T Consensus       194 ~G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~a----Lilsga~PVYl~P~~n~~  269 (713)
T PRK15399        194 TGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHL----LMMSDVVPIWLKPTRNAL  269 (713)
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHH----HHHcCCeeEEeccccccc
Confidence            345678899999999999999999998 889999999999999999999999987643    44567777776432    


Q ss_pred             ------CH-----HHHHHhhcCC----CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEE-EEeCCCCCCCccc-----
Q 012296          284 ------DM-----EGLEAALNNN----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV-CIDGTFATPLNQK-----  342 (466)
Q Consensus       284 ------Dl-----e~Le~ai~~~----~tklV~lesP~NPtG~v~dl~~Ia~la~~~gill-IvDea~a~~~~~~-----  342 (466)
                            +.     +.|+++|+++    +++++++++|+ ..|.++|+++|+++|   |+.+ ++|++|+....+.     
T Consensus       270 Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pT-YdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~  345 (713)
T PRK15399        270 GILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNST-YDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQG  345 (713)
T ss_pred             CCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCC-CCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCC
Confidence                  23     8888888653    23689998886 689999999999999   6666 6999987643222     


Q ss_pred             --cccc--CCcEE---EECCccccCccccceeEEEEeCHHHH-HHHHHHHHHhCCC
Q 012296          343 --ALSL--GADLV---LHSATKFIGGHNDVLAGSISGSGKLV-TQIRNLHHVLGGA  390 (466)
Q Consensus       343 --~l~~--gaDiv---v~S~sK~lgg~gdv~gG~ivg~~eli-~~l~~~~~~~G~~  390 (466)
                        ++..  ++|.+   +.|.||.+++..  .+.++..+..+- ++++.....+..+
T Consensus       346 ~sam~~~~~aD~~i~~tQStHKtL~alT--QaS~iHvk~~vd~~~~n~a~~m~~ST  399 (713)
T PRK15399        346 KSGMSGERVPGKVIFETQSTHKMLAAFS--QASLIHIKGEYDEETFNEAFMMHTST  399 (713)
T ss_pred             cChhhCCCCCCeeeeeeeehhccccccc--hheeeeecCCCCHHHHHHHHHHHcCC
Confidence              2222  57877   999999999886  577776654332 4555544444433

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.43  E-value=2e-11  Score=128.64  Aligned_cols=199  Identities=15%  Similarity=0.137  Sum_probs=126.4

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhc-----ccC
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL-----PKM  273 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l-----~~~  273 (466)
                      +..+.++...+|.++|+++...   +..++++||++|+..++....  ....+|+.....|++........-     ...
T Consensus        77 ~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~  156 (421)
T PRK09792         77 YQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKI  156 (421)
T ss_pred             cCccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCccccc
Confidence            3345677888898899988642   578888999999999887543  233578888888887421111110     011


Q ss_pred             Cc-----eEEEeCC----------CCHHHHHHhhc----CCCceEEEEeCCCCCCcccc-c---HHHHHHHHHhcCCEEE
Q 012296          274 GI-----TATVIDP----------ADMEGLEAALN----NNNVSLFFTESPTNPFLRCV-D---VKLVSDLCHKKGAIVC  330 (466)
Q Consensus       274 Gi-----~v~~vd~----------~Dle~Le~ai~----~~~tklV~lesP~NPtG~v~-d---l~~Ia~la~~~gillI  330 (466)
                      +.     .+..++.          .+++.+++.++    ..++++|++|...+++|... +   +++|.++|++||+++|
T Consensus       157 ~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI  236 (421)
T PRK09792        157 GFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMI  236 (421)
T ss_pred             CCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence            10     1222221          13477888775    23589999999999999765 5   8899999999999999


Q ss_pred             EeCCCCCCCc------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH
Q 012296          331 IDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK  404 (466)
Q Consensus       331 vDea~a~~~~------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~  404 (466)
                      +||++.....      ........|+  .+++|.++++  ...|++++++++++.+...........+|..+.+++..++
T Consensus       237 ~DEv~tg~gr~G~~~a~~~~~~~pDi--~t~gK~l~~G--~pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~  312 (421)
T PRK09792        237 ADEVQSGFARTGKLFAMDHYADKPDL--MTMAKSLAGG--MPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLN  312 (421)
T ss_pred             EeccccCCCCCCchhHHHhcCCCCcE--EEeehhhcCC--CceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHH
Confidence            9999653211      1112223575  5689999864  4678899999988776432211111235555554444444


Q ss_pred             HH
Q 012296          405 TL  406 (466)
Q Consensus       405 tl  406 (466)
                      .+
T Consensus       313 ~l  314 (421)
T PRK09792        313 II  314 (421)
T ss_pred             HH
Confidence            33

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.42  E-value=4.8e-12  Score=130.77  Aligned_cols=212  Identities=12%  Similarity=0.065  Sum_probs=137.0

Q ss_pred             hhHHHHHHHHHhhhCC--C-cEEEe-CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCH
Q 012296          210 PTTVVVEEKMSALEGA--E-STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM  285 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~--e-~~l~~-sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dl  285 (466)
                      ...++.++.++++++.  + +++++ +||+.++++++.+++.+ +.+++....|+.............+ ++.+++....
T Consensus        41 ~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~  118 (361)
T TIGR01366        41 NLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPWLG-EPIIVTADPG  118 (361)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhccC-CceEEecCCC
Confidence            4567789999999997  2 34554 45889999999998743 4445555666654433333322233 4444443222


Q ss_pred             HHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccc
Q 012296          286 EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDV  365 (466)
Q Consensus       286 e~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv  365 (466)
                      +.++..+++ ++++|.+.+-.|.||.+.|+++|   +|++|+++++|.+.+.+...-..+ .+|+++.|.+|++++++  
T Consensus       119 ~~~~~~~~~-~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~-~~D~~~~s~~K~lg~~~--  191 (361)
T TIGR01366       119 SAPEPQADP-GVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIA-ETDVYYFAPQKNFASDG--  191 (361)
T ss_pred             CCCCCccCC-CCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCCCCCHH-HCCEEEEEchhhcCCCC--
Confidence            344444555 49999999999999999999887   588999999999976554322222 28999999999999986  


Q ss_pred             eeEEEEeCHHHHHHHHHHHH-------H----------h-C---CCchHHHHHHHHHhhHH------HHHHHHHHHHHHH
Q 012296          366 LAGSISGSGKLVTQIRNLHH-------V----------L-G---GALNPNAAYLIIRGMKT------LHLRVQQQNSTAL  418 (466)
Q Consensus       366 ~gG~ivg~~eli~~l~~~~~-------~----------~-G---~~lsp~~a~l~l~~L~t------l~~R~~~~~~na~  418 (466)
                      ..++++.++++++++.....       .          . +   .+++....+.+...++.      ++.+.+++.+.++
T Consensus       192 Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~  271 (361)
T TIGR01366       192 GLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSS  271 (361)
T ss_pred             ceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            34666778887766652110       0          0 1   11122212222223332      4455677888889


Q ss_pred             HHHHHHHcCCCe
Q 012296          419 RMAKILEAHPKV  430 (466)
Q Consensus       419 ~La~~L~~~p~V  430 (466)
                      .+.++|++.+.+
T Consensus       272 ~l~~~l~~~~~~  283 (361)
T TIGR01366       272 RLYSWAQERPYA  283 (361)
T ss_pred             HHHHHHHhCCCc
Confidence            999999887653

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK06105 aminotransferase; Provisional

Probab=99.42  E-value=6e-11  Score=126.44  Aligned_cols=239  Identities=15%  Similarity=0.184  Sum_probs=149.0

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc------c-C-CCEEEEcCCCCcchHHHHHhh----
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV------P-A-GGHIVTTTDCYRKTRIFIETV----  269 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all------~-~-Gd~Vlv~~~~y~~t~~~~~~~----  269 (466)
                      ++++.++...+|.++|+++...  +.+.+.+||++|+.++++...      . + ..+||.....|++........    
T Consensus        86 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~  165 (460)
T PRK06105         86 FSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLP  165 (460)
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCc
Confidence            3456678888899999998753  567888999999999887642      1 2 357888888887733111000    


Q ss_pred             --cccCCc---eEEEeCCC------------------CHHHHHHhhc---CCCceEEEEeCCCCCCccccc----HHHHH
Q 012296          270 --LPKMGI---TATVIDPA------------------DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVS  319 (466)
Q Consensus       270 --l~~~Gi---~v~~vd~~------------------Dle~Le~ai~---~~~tklV~lesP~NPtG~v~d----l~~Ia  319 (466)
                        -+.++.   .+..++..                  ..+++++.+.   ..++.+|++|......|.+.+    +++|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr  245 (460)
T PRK06105        166 NNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQ  245 (460)
T ss_pred             ccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHH
Confidence              001110   11222111                  1355677663   234899999998877777766    89999


Q ss_pred             HHHHhcCCEEEEeCCCCCC-C-----cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHH-----hC
Q 012296          320 DLCHKKGAIVCIDGTFATP-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV-----LG  388 (466)
Q Consensus       320 ~la~~~gillIvDea~a~~-~-----~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~-----~G  388 (466)
                      ++|++||+++|+||++... -     .......-.||++  ++|.+++.. +..|++++++++++.+......     .+
T Consensus       246 ~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~--~gK~lggG~-~P~~av~~~~~i~~~~~~~~~~~~~~~h~  322 (460)
T PRK06105        246 AVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILV--MSKQLSSSY-QPLSAVLMNEKVYDPIADESGKIGTFGHG  322 (460)
T ss_pred             HHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeee--eecccccCc-ccceEEEEcHHHHHHHhcccccCcccccC
Confidence            9999999999999996321 1     1222233468776  789998752 3468888899988876532110     11


Q ss_pred             --CCchHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc---CCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEE
Q 012296          389 --GALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA---HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE  461 (466)
Q Consensus       389 --~~lsp~~a~l~l~~L~tl~~--R~~~~~~na~~La~~L~~---~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfe  461 (466)
                        ...+|..+..++..|+.+..  .+++..+..+.|.+.|++   +|.|..|                  +|.|.|++||
T Consensus       323 ~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~l~~~~~v~~v------------------rG~Gl~~gie  384 (460)
T PRK06105        323 FTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRALADHPLVGEV------------------RGVGLIAAVE  384 (460)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEE------------------EecceEEEEE
Confidence              23467777766666666543  244455555555555543   3333333                  5677777777


Q ss_pred             ec
Q 012296          462 VL  463 (466)
Q Consensus       462 l~  463 (466)
                      +.
T Consensus       385 ~~  386 (460)
T PRK06105        385 LV  386 (460)
T ss_pred             Ee
Confidence            64

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.40  E-value=9e-11  Score=123.74  Aligned_cols=219  Identities=14%  Similarity=0.150  Sum_probs=137.7

Q ss_pred             ccCCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhcc-----cC
Q 012296          204 YGRYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP-----KM  273 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g---~e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l~-----~~  273 (466)
                      +..+.++...+|.++|+++..   .+.+.+++||++|+..+++...  ....+|+.....|++........-.     ..
T Consensus        77 ~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~  156 (421)
T PRK06777         77 YQIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKV  156 (421)
T ss_pred             ccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCccccc
Confidence            334567778888899998864   3578888999999999887432  2345788888888884322211100     00


Q ss_pred             Cc-----eEEEeCC----------CCHHHHHHhhc----CCCceEEEEeCCCCCCccc-cc---HHHHHHHHHhcCCEEE
Q 012296          274 GI-----TATVIDP----------ADMEGLEAALN----NNNVSLFFTESPTNPFLRC-VD---VKLVSDLCHKKGAIVC  330 (466)
Q Consensus       274 Gi-----~v~~vd~----------~Dle~Le~ai~----~~~tklV~lesP~NPtG~v-~d---l~~Ia~la~~~gillI  330 (466)
                      +.     .+..++.          .+++.+++.++    ..++.+|++|...+..|.. .+   +++|.++|++||+++|
T Consensus       157 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI  236 (421)
T PRK06777        157 GFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLI  236 (421)
T ss_pred             CCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence            00     1111111          12566777774    2348999999988877753 44   8999999999999999


Q ss_pred             EeCCCCCCCc------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH
Q 012296          331 IDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK  404 (466)
Q Consensus       331 vDea~a~~~~------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~  404 (466)
                      +||++.....      ........|++  +++|.+++ | ...|++++++++++.+.......-...+|..+.+++..|+
T Consensus       237 ~DEv~tg~gr~g~~~~~~~~~~~pDiv--~~sK~l~~-G-~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~  312 (421)
T PRK06777        237 ADEVQTGFARTGKLFAMEYYDVKPDLI--TMAKSLGG-G-MPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLD  312 (421)
T ss_pred             EechhhCCccCCchhhhhhcCCCCCEE--eeehhhcC-C-CceEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHH
Confidence            9999763211      11112236766  58999984 4 4678899999988876533221112235666666665665


Q ss_pred             HHH--HHHHHHHHHHHHHHHHHHc
Q 012296          405 TLH--LRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       405 tl~--~R~~~~~~na~~La~~L~~  426 (466)
                      .++  ..+++..+..+++.+.|++
T Consensus       313 ~~~~~~l~~~~~~~g~~l~~~L~~  336 (421)
T PRK06777        313 VIAEEKLCQRALILGAHLVEVLEK  336 (421)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHH
Confidence            443  2344555566666666654

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.39  E-value=3e-11  Score=124.31  Aligned_cols=212  Identities=12%  Similarity=0.064  Sum_probs=144.2

Q ss_pred             ccccCCCc---hhHHHHHHHHHhhhCC-C--cEEEeC-CHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCC
Q 012296          202 FEYGRYGN---PTTVVVEEKMSALEGA-E--STVIMA-SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG  274 (466)
Q Consensus       202 ~~Y~R~~n---p~~~~Lee~LA~l~g~-e--~~l~~s-SGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~G  274 (466)
                      +..+....   ...+.+++.|+++++. +  ++++++ ||+.|+++++.+++.+||++++......+.+  +..+++++|
T Consensus        26 ~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r--~~~~a~~~g  103 (349)
T TIGR01364        26 MEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKK--AAKEAKKYG  103 (349)
T ss_pred             cccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHHhC
Confidence            44444444   4567789999999995 2  366664 4889999999999999999887776666633  235677778


Q ss_pred             ceEEEeC---------CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-ccccc
Q 012296          275 ITATVID---------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKAL  344 (466)
Q Consensus       275 i~v~~vd---------~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l  344 (466)
                      + +..+.         ..++++++  +++ ++++|.+.+-.+.||...+     ++++.++++++||.+.+.+. ..+..
T Consensus       104 ~-~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~~id~~  174 (349)
T TIGR01364       104 V-VNVVASGKEGNYTKIPDPSTWE--ISE-DAAYVHYCANETIHGVEFR-----ELPDVKNAPLVADMSSNILSRPIDVS  174 (349)
T ss_pred             C-cEEEeccccCCCCCCCCHHhcC--CCC-CCCEEEEcCCCCcccEecc-----eecccCCCeEEEEccccccCccCCHH
Confidence            7 44333         22445444  334 4899999888899999876     67777899999999976543 33443


Q ss_pred             ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHH-------HH-----HhCCCchHHHHHHHHHhhHH------H
Q 012296          345 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-------HH-----VLGGALNPNAAYLIIRGMKT------L  406 (466)
Q Consensus       345 ~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~-------~~-----~~G~~lsp~~a~l~l~~L~t------l  406 (466)
                      +  .|+++.|.+|+||++|   .|+++.++++++++...       ..     ...++.+-...+.+...++.      +
T Consensus       175 ~--~d~~~~ssqK~lgP~G---lg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~  249 (349)
T TIGR01364       175 K--FGLIYAGAQKNIGPAG---LTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGV  249 (349)
T ss_pred             H--ccEEEEecccccCCCc---eEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCH
Confidence            4  3599999999998765   68889999888765321       10     01123232223332233332      5


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCC
Q 012296          407 HLRVQQQNSTALRMAKILEAHPK  429 (466)
Q Consensus       407 ~~R~~~~~~na~~La~~L~~~p~  429 (466)
                      +.+.+++.+.++.+.++|++.++
T Consensus       250 e~i~~r~~~l~~~l~~~l~~~~g  272 (349)
T TIGR01364       250 KAIEKRNQAKAQLLYDTIDNSNG  272 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCC
Confidence            56677788889999999999876

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK07046 aminotransferase; Validated

Probab=99.39  E-value=9e-11  Score=124.86  Aligned_cols=215  Identities=20%  Similarity=0.214  Sum_probs=142.9

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHH-HHhhc-----c---cCCc
Q 012296          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIF-IETVL-----P---KMGI  275 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~-~~~~l-----~---~~Gi  275 (466)
                      ..++...+|.+.|.++.+.+.+.+++||++|+..+++...  ...++|+.....|++.... +....     .   ..|+
T Consensus       112 ~~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~  191 (453)
T PRK07046        112 LPSEDAAWVGEELARRFGLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQ  191 (453)
T ss_pred             CCCHHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCC
Confidence            3567778899999998887889999999999998887542  3346888888888884321 11100     0   0121


Q ss_pred             ------eEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCC----CCCcc
Q 012296          276 ------TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFA----TPLNQ  341 (466)
Q Consensus       276 ------~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a----~~~~~  341 (466)
                            .+..++..|++++++.+...++.+|++|......|.+.+    +++|.++|+++|+++|+||+..    .+-.+
T Consensus       192 ~~~~~~~~~~~~~nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~  271 (453)
T PRK07046        192 VHDLTATTRVVEFNDLAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYT  271 (453)
T ss_pred             CccccCceEeeCCCCHHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchh
Confidence                  233445668999999996556899999988766676654    7999999999999999999964    12112


Q ss_pred             cccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH------H-HhCC--CchHHHHHHHHHhhHHHHH--HH
Q 012296          342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH------H-VLGG--ALNPNAAYLIIRGMKTLHL--RV  410 (466)
Q Consensus       342 ~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~------~-~~G~--~lsp~~a~l~l~~L~tl~~--R~  410 (466)
                      .....-.|+++  +.|.++|+  ...|++++++++++.+....      . ..++  ..+|..+.+++..|+.+..  .+
T Consensus       272 ~~~gv~PDi~t--~gK~lggG--~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~  347 (453)
T PRK07046        272 RAHGLEPDFLV--VGKPIAGG--VPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAY  347 (453)
T ss_pred             HHhCCCcccee--ehhhhcCC--CcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHH
Confidence            22233468876  78999975  46788899999988775321      0 1122  2356666665555554421  23


Q ss_pred             HHHHHHHHHHHHHHH
Q 012296          411 QQQNSTALRMAKILE  425 (466)
Q Consensus       411 ~~~~~na~~La~~L~  425 (466)
                      ++..+..++|.+.|+
T Consensus       348 ~~~~~~g~~l~~~L~  362 (453)
T PRK07046        348 AHMLALAARLAAGLR  362 (453)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444555555554

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.39  E-value=7.7e-11  Score=124.29  Aligned_cols=197  Identities=14%  Similarity=0.146  Sum_probs=124.4

Q ss_pred             CCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhh-cc----cCC--
Q 012296          207 YGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV-LP----KMG--  274 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~-l~----~~G--  274 (466)
                      ..++...+|.+.|+++.+.   +..++++||++|+..++....  ....+||...+.|++........ ..    ..+  
T Consensus        81 ~~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~  160 (425)
T PRK08088         81 LAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMG  160 (425)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCC
Confidence            3467777888888887653   478889999998888776442  23456777788888854332221 00    001  


Q ss_pred             -----ceEEEeC--CC------CHHHHHHhhc----CCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeC
Q 012296          275 -----ITATVID--PA------DMEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDG  333 (466)
Q Consensus       275 -----i~v~~vd--~~------Dle~Le~ai~----~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDe  333 (466)
                           +....++  ..      ++++++++++    .+++++|++|......|.+.+    +++|.++|+++|+++|+||
T Consensus       161 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~De  240 (425)
T PRK08088        161 LMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADE  240 (425)
T ss_pred             CCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence                 1111011  11      1556888775    235889999877655555554    8899999999999999999


Q ss_pred             CCCCCCc-ccc--c-ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH
Q 012296          334 TFATPLN-QKA--L-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT  405 (466)
Q Consensus       334 a~a~~~~-~~~--l-~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~t  405 (466)
                      ++..... ...  . ..+.+.-+.|++|.+++ | .+.|++++++++++.+...........++..+.+++..++.
T Consensus       241 v~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~-G-~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~  314 (425)
T PRK08088        241 VQTGAGRTGTLFAMEQMGVAADLTTFAKSIAG-G-FPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKV  314 (425)
T ss_pred             cccCCCcCcchhHHhhcCCCCCEEEEeccccC-C-CcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence            9764211 111  1 22444446789999985 4 46899999999998876543322233456665555555544

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=99.38  E-value=1.1e-11  Score=121.52  Aligned_cols=179  Identities=21%  Similarity=0.354  Sum_probs=139.1

Q ss_pred             cCCccccCCCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHHccCCCEEEEcCCC-CcchHHHH------Hh
Q 012296          199 RASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTTDC-YRKTRIFI------ET  268 (466)
Q Consensus       199 ~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~---~sSGs~Ai~~al~all~~Gd~Vlv~~~~-y~~t~~~~------~~  268 (466)
                      +.+|.|.   +-.++.|++..|+.+|+|.+++   +-||+.||..+|..+++|||+++..... |......+      ..
T Consensus        57 stGYGyd---D~GRdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~g  133 (416)
T COG4100          57 STGYGYD---DLGRDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQG  133 (416)
T ss_pred             CCCCCcc---ccchhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcc
Confidence            4466665   4457789999999999987765   5799999999999999999998865433 33322222      11


Q ss_pred             hcccCCceEEEeCC-----CCHHHHHHhhcCCCceEEEEeCCC----CCCcccccHHHHHHHHHhc--CCEEEEeCCCCC
Q 012296          269 VLPKMGITATVIDP-----ADMEGLEAALNNNNVSLFFTESPT----NPFLRCVDVKLVSDLCHKK--GAIVCIDGTFAT  337 (466)
Q Consensus       269 ~l~~~Gi~v~~vd~-----~Dle~Le~ai~~~~tklV~lesP~----NPtG~v~dl~~Ia~la~~~--gillIvDea~a~  337 (466)
                      .++.+|+..+-++.     .|.+.++.+++++ ||+|.+.-..    -|...+.+|+++.++.++-  ++++.||++|+.
T Consensus       134 SL~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~~~-tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGE  212 (416)
T COG4100         134 SLKDFGIKYKAVPLTADGKIDIQAVKTAISDR-TKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGE  212 (416)
T ss_pred             cHHHhCcceeecccccCCcccHHHHHHhcCcc-ceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchh
Confidence            24556777776663     3899999999985 9999996542    4667777899999999884  699999999998


Q ss_pred             CCc-ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHH
Q 012296          338 PLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR  381 (466)
Q Consensus       338 ~~~-~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~  381 (466)
                      ++. ..|...|+|++..|+-|.-||.---.||++.++.+++++..
T Consensus       213 FvE~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~  257 (416)
T COG4100         213 FVEEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAA  257 (416)
T ss_pred             hhhccCccccchhhhccceeeCCCCceeeccceeechHHHHHhhc
Confidence            765 56788899999999999998875556899999999998753

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.38  E-value=2.6e-11  Score=136.25  Aligned_cols=149  Identities=15%  Similarity=0.211  Sum_probs=115.2

Q ss_pred             hHHHHHHHHHhhhCCCcEEEeC-CHHHHHHHHHHHHcc-------C-CCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          211 TTVVVEEKMSALEGAESTVIMA-SGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       211 ~~~~Lee~LA~l~g~e~~l~~s-SGs~Ai~~al~all~-------~-Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ...++++.+++++|.+.+-+.. +|+.+..+.++++..       + .++|+++...|+.+...    +...|++++.++
T Consensus       544 ~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpas----a~~~GieVv~Vp  619 (954)
T PRK12566        544 MIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPAS----AQMAGMRVVIVE  619 (954)
T ss_pred             HHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHH----HHHCCCEEEEec
Confidence            3567899999999998777776 777777666665432       2 35788999999776432    344688888876


Q ss_pred             C-----CCHHHHHHhhcC--CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCC-C-CcccccccCCcEEE
Q 012296          282 P-----ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT-P-LNQKALSLGADLVL  352 (466)
Q Consensus       282 ~-----~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~-~-~~~~~l~~gaDivv  352 (466)
                      .     .|+++|++.+++  .++++|.+.+|++-.+...++++|+++||++|+++++|.+... . ....|.++|+|+++
T Consensus       620 ~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~~  699 (954)
T PRK12566        620 CDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGADVSH  699 (954)
T ss_pred             cCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCCCEEE
Confidence            4     389999999872  2488899999987666667799999999999999999999653 2 23446789999999


Q ss_pred             ECCccccCccc
Q 012296          353 HSATKFIGGHN  363 (466)
Q Consensus       353 ~S~sK~lgg~g  363 (466)
                      .+++|+|++|.
T Consensus       700 ~s~HKtf~~P~  710 (954)
T PRK12566        700 MNLHKTFCIPH  710 (954)
T ss_pred             ecCCcccCcCc
Confidence            99999998654

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.38  E-value=1.7e-10  Score=124.23  Aligned_cols=217  Identities=12%  Similarity=0.132  Sum_probs=134.1

Q ss_pred             CCchhHHHHHHHHHhhhC-C--CcEEEeCCHHHHHHHHHHHHc------c-CC-CEEEEcCCCCcchHHHHHhhc-----
Q 012296          207 YGNPTTVVVEEKMSALEG-A--ESTVIMASGMSASTVMLLALV------P-AG-GHIVTTTDCYRKTRIFIETVL-----  270 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g-~--e~~l~~sSGs~Ai~~al~all------~-~G-d~Vlv~~~~y~~t~~~~~~~l-----  270 (466)
                      ..++...+|.++|.+++. .  +.+++++||++|+..++....      . +| .+||..+..|++.......+-     
T Consensus       130 ~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~  209 (504)
T PLN02760        130 RTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPAL  209 (504)
T ss_pred             cCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhh
Confidence            356777889999888853 2  457788999999999988653      1 22 578888888887421110000     


Q ss_pred             -ccCCce---EEEeCCC----------C--------HHHHHHhhc---CCCceEEEEeCCCCCCccccc----HHHHHHH
Q 012296          271 -PKMGIT---ATVIDPA----------D--------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDL  321 (466)
Q Consensus       271 -~~~Gi~---v~~vd~~----------D--------le~Le~ai~---~~~tklV~lesP~NPtG~v~d----l~~Ia~l  321 (466)
                       ..++..   +..++..          +        .+++++++.   +.++.+|++|......|.+.+    +++|.++
T Consensus       210 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~l  289 (504)
T PLN02760        210 HQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAV  289 (504)
T ss_pred             ccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHH
Confidence             011110   1122210          1        234666663   224889999998877788877    9999999


Q ss_pred             HHhcCCEEEEeCCCCCC-C-----cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH-----HhCC-
Q 012296          322 CHKKGAIVCIDGTFATP-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-----VLGG-  389 (466)
Q Consensus       322 a~~~gillIvDea~a~~-~-----~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~-----~~G~-  389 (466)
                      |++||+++|+||++.+. -     .......-+||++  ++|.++++. +..|.+++++++++.+.....     ..+. 
T Consensus       290 c~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgK~lggG~-~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T  366 (504)
T PLN02760        290 LKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVS--LAKALSSAY-MPIGAVLVSPEISDVIHSQSNKLGSFAHGFT  366 (504)
T ss_pred             HHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEE--ecccccCCc-cccceEeecHHHHhhhhcccccccCcccCCC
Confidence            99999999999996321 1     1122223467765  789998742 235668888999887753100     1111 


Q ss_pred             -CchHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc
Q 012296          390 -ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA  426 (466)
Q Consensus       390 -~lsp~~a~l~l~~L~tl~~--R~~~~~~na~~La~~L~~  426 (466)
                       .-+|..+..++..|+.+..  .+++..+..++|.+.|++
T Consensus       367 ~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L~~  406 (504)
T PLN02760        367 YSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKA  406 (504)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence             2357777776666666543  244555555666665654

>PRK06541 hypothetical protein; Provisional

Probab=99.37  E-value=1.1e-10  Score=124.53  Aligned_cols=219  Identities=14%  Similarity=0.162  Sum_probs=139.3

Q ss_pred             CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc--------CCCEEEEcCCCCcchHHHHHhhc-----
Q 012296          206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETVL-----  270 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~--------~Gd~Vlv~~~~y~~t~~~~~~~l-----  270 (466)
                      .+.++...+|.++|+++...  +.+.+++||++|+..++.....        ...+||.....|++.........     
T Consensus        91 ~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~  170 (460)
T PRK06541         91 SYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAF  170 (460)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhh
Confidence            35678888899999998643  6788889999999988874321        13678888888887432111100     


Q ss_pred             -ccCC---ceEEEeCC----------CC--------HHHHHHhhc---CCCceEEEEeCCCCCCccccc----HHHHHHH
Q 012296          271 -PKMG---ITATVIDP----------AD--------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDL  321 (466)
Q Consensus       271 -~~~G---i~v~~vd~----------~D--------le~Le~ai~---~~~tklV~lesP~NPtG~v~d----l~~Ia~l  321 (466)
                       ..++   ..+..++.          .+        ++.+++.++   ..++.+|++|...++.|.+.+    +++|.++
T Consensus       171 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~l  250 (460)
T PRK06541        171 KAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREI  250 (460)
T ss_pred             ccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHH
Confidence             0000   01111110          11        356777775   234789999888899999887    9999999


Q ss_pred             HHhcCCEEEEeCCCCCC-Cc-----ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHH--hC--CCc
Q 012296          322 CHKKGAIVCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LG--GAL  391 (466)
Q Consensus       322 a~~~gillIvDea~a~~-~~-----~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~--~G--~~l  391 (466)
                      |+++|+++|+||++.+. -.     ........|+++  ++|.++++ ....|++++++++++.+......  .+  ...
T Consensus       251 c~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt--~gK~l~~G-~~pigav~~~~~i~~~~~~~~~~~~~~~T~~g  327 (460)
T PRK06541        251 CDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIIT--CAKGITSG-YSPLGAMIASDRLFEPFLDGPTMFLHGYTFGG  327 (460)
T ss_pred             HHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEE--ecccccCC-ccceeEEEEcHHHHHHhhcCCCccccCCCCCC
Confidence            99999999999997321 11     111223468775  89999853 22367778888888776532111  11  223


Q ss_pred             hHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHcC
Q 012296          392 NPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       392 sp~~a~l~l~~L~tl~~--R~~~~~~na~~La~~L~~~  427 (466)
                      +|..+.+++..++.+..  .+++..+..+++.+.|++.
T Consensus       328 np~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l  365 (460)
T PRK06541        328 HPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKL  365 (460)
T ss_pred             CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence            56666666666665432  3455666667777777654

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.37  E-value=3.5e-11  Score=125.49  Aligned_cols=237  Identities=18%  Similarity=0.136  Sum_probs=151.8

Q ss_pred             cccCCCc-cCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc-CCCEEEEc
Q 012296          178 VNTSAYF-FKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-AGGHIVTT  255 (466)
Q Consensus       178 ~~sst~~-~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~-~Gd~Vlv~  255 (466)
                      ..|+|.+ -++.+++.++..   +.-.|+  ++|+..+||+.+++++|.+.++.+.+|..+...++..+++ +||++++.
T Consensus        46 LrSDTgT~apS~~m~aAM~~---GDD~Y~--gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~~~g~e~g~~  120 (467)
T TIGR02617        46 LLTDSGTGAVTQSMQAAMMR---GDEAYS--GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLD  120 (467)
T ss_pred             CccCCCCCCCCHHHHHHHHc---CCcccc--cCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhccccccccccc
Confidence            5567777 478888888775   334576  6899999999999999999999999999999888888888 68877754


Q ss_pred             CC-------CCcc-hHHHHHhhcccCCceEEEe--------------C-CCCHHHHHHhhcC---CCceEEEEeCCCCC-
Q 012296          256 TD-------CYRK-TRIFIETVLPKMGITATVI--------------D-PADMEGLEAALNN---NNVSLFFTESPTNP-  308 (466)
Q Consensus       256 ~~-------~y~~-t~~~~~~~l~~~Gi~v~~v--------------d-~~Dle~Le~ai~~---~~tklV~lesP~NP-  308 (466)
                      ..       .|.. +...    ....|+.+..+              + ..|+++|+++|++   .+...+.++-.+|. 
T Consensus       121 ~~~~~v~hn~~fett~g~----a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~  196 (467)
T TIGR02617       121 RSKMVAFSNYFFDTTQGH----SQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSA  196 (467)
T ss_pred             ccccccceEEEEecchHH----HHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecC
Confidence            43       2222 1111    12234332221              1 2389999999985   22334444333454 


Q ss_pred             Cccccc---HHHHHHHHHhcCCEEEEeCC--CC-CC--------Cc-cc--cc----ccCCcEEEECCccccCcccccee
Q 012296          309 FLRCVD---VKLVSDLCHKKGAIVCIDGT--FA-TP--------LN-QK--AL----SLGADLVLHSATKFIGGHNDVLA  367 (466)
Q Consensus       309 tG~v~d---l~~Ia~la~~~gillIvDea--~a-~~--------~~-~~--~l----~~gaDivv~S~sK~lgg~gdv~g  367 (466)
                      .|.+.+   ++++.++|++||+.+++|.+  +. ..        .. ..  .+    ...+|.+..|++|-++.+   +|
T Consensus       197 GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgAp---vG  273 (467)
T TIGR02617       197 GGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVP---MG  273 (467)
T ss_pred             CCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCc---cc
Confidence            366665   67889999999999999997  21 11        11 11  11    135899999999999988   58


Q ss_pred             EEEEeCHH----HHHHHHHHHH------HhCCCchHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHcC
Q 012296          368 GSISGSGK----LVTQIRNLHH------VLGGALNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       368 G~ivg~~e----li~~l~~~~~------~~G~~lsp~~a~l~l~~L~tl--~~R~~~~~~na~~La~~L~~~  427 (466)
                      |+++++++    +.++++....      .+| .++.-+..++..||+..  ...++......++|.+.|.+.
T Consensus       274 g~Lag~d~~~~~l~~~~~~~~i~~EGf~tYG-Glagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~L~~~  344 (467)
T TIGR02617       274 GLLCFKDDSFFDVYTECRTLCVVQEGFPTYG-GLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVNGLEEI  344 (467)
T ss_pred             ceEEecchhHHHHHHHHHhhcccccCCcCcC-chhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhC
Confidence            99998764    3444443322      122 34443333333444431  223444455667888888765

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK07482 hypothetical protein; Provisional

Probab=99.37  E-value=2.4e-10  Score=121.87  Aligned_cols=225  Identities=12%  Similarity=0.058  Sum_probs=136.8

Q ss_pred             CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------C-CCEEEEcCCCCcchHHH-H--------
Q 012296          206 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIF-I--------  266 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g--~e~~l~~sSGs~Ai~~al~all~-------~-Gd~Vlv~~~~y~~t~~~-~--------  266 (466)
                      .+.++...+|.++|+++..  .+.+.+++||++|+..++.....       + ..+||.....|++.... .        
T Consensus        90 ~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~  169 (461)
T PRK07482         90 GHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLF  169 (461)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchh
Confidence            4567888889999999874  36788889999999998875431       1 35788888888883211 1        


Q ss_pred             HhhcccCCceEEEeCC------------------CCHHHHHHhhc---CCCceEEEEeCCCCCCccccc----HHHHHHH
Q 012296          267 ETVLPKMGITATVIDP------------------ADMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDL  321 (466)
Q Consensus       267 ~~~l~~~Gi~v~~vd~------------------~Dle~Le~ai~---~~~tklV~lesP~NPtG~v~d----l~~Ia~l  321 (466)
                      ........-.+..++.                  .+++++++.+.   ..++.+|++|......|.+.+    +++|.++
T Consensus       170 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~l  249 (461)
T PRK07482        170 HQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAV  249 (461)
T ss_pred             hhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHH
Confidence            0000000001111110                  03567777774   234899999988766676653    7899999


Q ss_pred             HHhcCCEEEEeCCCCCC------CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH-----HHhCC-
Q 012296          322 CHKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLGG-  389 (466)
Q Consensus       322 a~~~gillIvDea~a~~------~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~-----~~~G~-  389 (466)
                      |++||+++|+||++.+.      +.......-+|+++  +.|.++++- ...|.+++++++++.+....     ...+. 
T Consensus       250 c~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~-~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T  326 (461)
T PRK07482        250 LKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLIT--VAKGLTSAY-APLSGSIVGEKVWDVLEQGSDEHGAIGHGWT  326 (461)
T ss_pred             HHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEE--EccccccCc-cccceeeecHHHHHHHhcccccCCccccCCC
Confidence            99999999999995432      11222333478888  689998752 23466777888877664210     01122 


Q ss_pred             -CchHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH----cCCCeEEE
Q 012296          390 -ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILE----AHPKVKRV  433 (466)
Q Consensus       390 -~lsp~~a~l~l~~L~tl~~--R~~~~~~na~~La~~L~----~~p~V~~V  433 (466)
                       .-+|..+.+++..|+.+..  .+++..+..+.+.+.|+    ++|.|..|
T Consensus       327 ~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~v  377 (461)
T PRK07482        327 YSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEV  377 (461)
T ss_pred             CCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence             2356766666666665532  12333344444444443    45655554

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.37  E-value=1.9e-10  Score=122.03  Aligned_cols=223  Identities=16%  Similarity=0.153  Sum_probs=134.1

Q ss_pred             CCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHH--ccCCCEEEEcCCCCcchHHHHHhhcc-----cCCc-
Q 012296          207 YGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLP-----KMGI-  275 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~al--l~~Gd~Vlv~~~~y~~t~~~~~~~l~-----~~Gi-  275 (466)
                      ..++...+|.++|+++...   +.+++++||++|+..++...  ....++||.....|++........-.     ..+. 
T Consensus        96 ~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~  175 (443)
T PRK06058         96 TPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFG  175 (443)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccC
Confidence            4567788899999988753   46788899999999988732  23347899999999884322111000     0010 


Q ss_pred             ----eEEEeC---C-CC---------------HHHHHHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCE
Q 012296          276 ----TATVID---P-AD---------------MEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAI  328 (466)
Q Consensus       276 ----~v~~vd---~-~D---------------le~Le~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gil  328 (466)
                          .+..++   . .+               ++.+++.+..+++++|++|......|.+.+    +++|.++|++||++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gil  255 (443)
T PRK06058        176 PFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVV  255 (443)
T ss_pred             CCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence                111111   0 01               233444444345899998876544455543    89999999999999


Q ss_pred             EEEeCCCCCCC----c--ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHh
Q 012296          329 VCIDGTFATPL----N--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG  402 (466)
Q Consensus       329 lIvDea~a~~~----~--~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~  402 (466)
                      +|.||++....    .  ......-.|+++.  +|.++++  ...|++++++++++.+.......-...+|..+.+++..
T Consensus       256 lI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~--gK~l~~G--~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~  331 (443)
T PRK06058        256 FIADEVQTGFARTGAWFACEHEGIVPDLITT--AKGIAGG--LPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAA  331 (443)
T ss_pred             EEEeccccCCCcChhhhHHHhcCCCCCEEEE--cccccCC--CccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHH
Confidence            99999965321    1  1112233588875  6999853  46788889999887765322111123456666666666


Q ss_pred             hHHHHH--HHHHHHHHHHHHHHHHHc----CCCeEEE
Q 012296          403 MKTLHL--RVQQQNSTALRMAKILEA----HPKVKRV  433 (466)
Q Consensus       403 L~tl~~--R~~~~~~na~~La~~L~~----~p~V~~V  433 (466)
                      |+.+..  .+++..+..+.+.+.|++    ++.|..|
T Consensus       332 L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v  368 (443)
T PRK06058        332 IETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDV  368 (443)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcEEee
Confidence            665432  233344444555555543    4544444

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.37  E-value=2.2e-10  Score=120.75  Aligned_cols=198  Identities=15%  Similarity=0.099  Sum_probs=125.0

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhc-----ccC
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL-----PKM  273 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l-----~~~  273 (466)
                      +....++...+|.++|+++...   +.+++++||++|+..++....  ....+|+.....|++........-     ...
T Consensus        70 ~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~  149 (420)
T TIGR00700        70 FMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKS  149 (420)
T ss_pred             ccccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCccccc
Confidence            3345677788888899988742   568888999999999887432  234578888888887432211110     001


Q ss_pred             Cc-----eEEEeCCC----------------CHHHHHHhhc----CCCceEEEEeCCCCCCccccc----HHHHHHHHHh
Q 012296          274 GI-----TATVIDPA----------------DMEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHK  324 (466)
Q Consensus       274 Gi-----~v~~vd~~----------------Dle~Le~ai~----~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~  324 (466)
                      +.     .+..++..                +++.+++.+.    ..++.+|++|.....+|...+    +++|.++|++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~  229 (420)
T TIGR00700       150 GFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCRE  229 (420)
T ss_pred             CCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHH
Confidence            11     11111110                2456666652    235899999988877787765    8999999999


Q ss_pred             cCCEEEEeCCCCCCCc------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHH
Q 012296          325 KGAIVCIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL  398 (466)
Q Consensus       325 ~gillIvDea~a~~~~------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l  398 (466)
                      ||+++|+||++.....      ........|+++  ++|.+++ | ...|++++++++++.+...........+|..+.+
T Consensus       230 ~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~--lsK~l~~-G-~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aa  305 (420)
T TIGR00700       230 HGIVFIADEVQTGFARTGAMFACEHEGPEPDLIT--TAKSLAD-G-LPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAA  305 (420)
T ss_pred             cCCEEEEEecccCCcccchhHHHhhcCCCCCEEE--eeccccC-C-cceEEEEecHHHHhhcCCCCcCCCCCcCHHHHHH
Confidence            9999999999764211      111223467655  8999994 4 4678899999998876532211112235666555


Q ss_pred             HHHhhHH
Q 012296          399 IIRGMKT  405 (466)
Q Consensus       399 ~l~~L~t  405 (466)
                      ++..++.
T Consensus       306 a~a~l~~  312 (420)
T TIGR00700       306 ALAVLAI  312 (420)
T ss_pred             HHHHHHH
Confidence            5444443

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.37  E-value=3.1e-11  Score=137.86  Aligned_cols=158  Identities=22%  Similarity=0.309  Sum_probs=127.5

Q ss_pred             HHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHH-ccC--CCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHH
Q 012296          213 VVVEEKMSALEGAE--STVIMASGMSASTVMLLAL-VPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (466)
Q Consensus       213 ~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~al-l~~--Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~  287 (466)
                      .++++.++++.|.+  ++.++.+++++..++++++ ..+  +|+|++++..|+.+...+...++..|++++.++..+  +
T Consensus       124 ~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~--d  201 (954)
T PRK05367        124 LNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK--A  201 (954)
T ss_pred             HHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCcc--C
Confidence            45688999999985  5677888888888777766 344  489999999999988888777788999999887543  1


Q ss_pred             HHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCC-CCCCcccccccCCcEEEECCccc-----cCc
Q 012296          288 LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-ATPLNQKALSLGADLVLHSATKF-----IGG  361 (466)
Q Consensus       288 Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~-a~~~~~~~l~~gaDivv~S~sK~-----lgg  361 (466)
                      +    +..++.++++..| |.+|.+.|+++|+++||++|+++++|... +......|.++|+||++.|.+||     +||
T Consensus       202 ~----~~~~~~~vlvq~p-~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~GG  276 (954)
T PRK05367        202 L----DHDDVFGVLLQYP-GTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFGG  276 (954)
T ss_pred             C----CcccEEEEEEecC-CCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCCCCCC
Confidence            1    1223777878777 47999999999999999999999999865 33455678889999999999999     778


Q ss_pred             cccceeEEEEeCHHHHHHH
Q 012296          362 HNDVLAGSISGSGKLVTQI  380 (466)
Q Consensus       362 ~gdv~gG~ivg~~eli~~l  380 (466)
                      |+   +|+++.++++..++
T Consensus       277 P~---aGflavr~~~~r~l  292 (954)
T PRK05367        277 PH---AAYFAVRDAYKRSM  292 (954)
T ss_pred             CC---EEEEEECHHHHhhC
Confidence            85   89999998877665

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.37  E-value=1.1e-10  Score=123.14  Aligned_cols=230  Identities=13%  Similarity=0.120  Sum_probs=137.2

Q ss_pred             CCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhh------c-ccC
Q 012296          206 RYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV------L-PKM  273 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~------l-~~~  273 (466)
                      .+.++...+|.++|.++...   +.+++++||++|+..++....  ....+|+.....|++........      . ..+
T Consensus        79 ~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~  158 (425)
T PRK07495         79 VVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGF  158 (425)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCC
Confidence            45678888899999998753   467888999999999887442  23457888888888742111110      0 000


Q ss_pred             C---ceEEEeCCC----------CHHHHHHhhc----CCCceEEEEeCCCCCCcccc-c---HHHHHHHHHhcCCEEEEe
Q 012296          274 G---ITATVIDPA----------DMEGLEAALN----NNNVSLFFTESPTNPFLRCV-D---VKLVSDLCHKKGAIVCID  332 (466)
Q Consensus       274 G---i~v~~vd~~----------Dle~Le~ai~----~~~tklV~lesP~NPtG~v~-d---l~~Ia~la~~~gillIvD  332 (466)
                      +   ..+..++..          +++++++.++    ..++++|++|....-+|... +   +++|.++|++||+++|+|
T Consensus       159 ~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~D  238 (425)
T PRK07495        159 GAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIAD  238 (425)
T ss_pred             CCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence            1   012223221          1455676653    23589999987765567443 2   789999999999999999


Q ss_pred             CCCCCCCc-ccc---cccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHH
Q 012296          333 GTFATPLN-QKA---LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL  408 (466)
Q Consensus       333 ea~a~~~~-~~~---l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~~  408 (466)
                      |++..... ...   ...|...-+.+++|.++++  ...|++++++++++.+...........+|..+..++..++.+..
T Consensus       239 Ev~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~~G--~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~  316 (425)
T PRK07495        239 EVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGG--FPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEE  316 (425)
T ss_pred             chhhcCCcCCCceeecccCCCCCEEeehhhhcCC--ccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHh
Confidence            99653211 111   1223333345689999864  46788999999887764322111123456666655555554432


Q ss_pred             --HHHHHHHHHHHHHHHHH----cCCCeEEEeCCC
Q 012296          409 --RVQQQNSTALRMAKILE----AHPKVKRVHYPG  437 (466)
Q Consensus       409 --R~~~~~~na~~La~~L~----~~p~V~~V~yPg  437 (466)
                        ..++..+..+++.+.|+    ++|.+..|+.+|
T Consensus       317 ~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~G  351 (425)
T PRK07495        317 EDLCERANQLGNRLKQRLASLRETVPEIADIRGPG  351 (425)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecCc
Confidence              22333344444444443    356565555443

>PRK05965 hypothetical protein; Provisional

Probab=99.37  E-value=2.3e-10  Score=121.94  Aligned_cols=236  Identities=17%  Similarity=0.201  Sum_probs=143.9

Q ss_pred             CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------C-CCEEEEcCCCCcchHHHHHhh------c
Q 012296          207 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETV------L  270 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g--~e~~l~~sSGs~Ai~~al~all~-------~-Gd~Vlv~~~~y~~t~~~~~~~------l  270 (466)
                      +.++...+|.++|+++..  .+.+++.+||++|+..+++....       + ..+||.....|++........      -
T Consensus        87 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~  166 (459)
T PRK05965         87 FGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFH  166 (459)
T ss_pred             cCCHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhh
Confidence            456777789999998874  35677778999999998875431       2 257888888888843211000      0


Q ss_pred             ccCCc---eEEEeCC---------CC--------HHHHHHhhcC---CCceEEEEeCCCCCCccccc----HHHHHHHHH
Q 012296          271 PKMGI---TATVIDP---------AD--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCH  323 (466)
Q Consensus       271 ~~~Gi---~v~~vd~---------~D--------le~Le~ai~~---~~tklV~lesP~NPtG~v~d----l~~Ia~la~  323 (466)
                      ..++.   .+..++.         .|        ++++++.++.   .++.+|++|......|.+.+    +++|.++|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~  246 (459)
T PRK05965        167 RGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACR  246 (459)
T ss_pred             cccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHH
Confidence            01110   1111211         12        2567777752   34899999998876676653    789999999


Q ss_pred             hcCCEEEEeCCCCCC------CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH-----HHhCC--C
Q 012296          324 KKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLGG--A  390 (466)
Q Consensus       324 ~~gillIvDea~a~~------~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~-----~~~G~--~  390 (466)
                      +||+++|.||++.+.      +.......-.||++  +.|.++++ -+..|.+++++++++.+..-.     ...+.  .
T Consensus       247 ~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG-~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~  323 (459)
T PRK05965        247 ELGILFVADEVITGFGRTGPLFACEAEGVVPDLMT--VAKGLTSG-YVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYS  323 (459)
T ss_pred             HcCCEEEEechhccCccCchhhhHhhcCCCCCeEE--echhhccC-CcceeEEEEcHHHHHHHhccccccccccccCCCC
Confidence            999999999995432      11222333478888  68999875 224677888999887764210     01121  2


Q ss_pred             chHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc---CCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEec
Q 012296          391 LNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA---HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVL  463 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~--R~~~~~~na~~La~~L~~---~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~  463 (466)
                      -+|..+.+++..|+.++.  .+++..+.-.++.+.|++   +|.|..                  .+|.|.|++||+.
T Consensus       324 gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~------------------vrG~Gl~~gie~~  383 (459)
T PRK05965        324 AHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALRAHPLVGD------------------VRGRGLLGALELV  383 (459)
T ss_pred             CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhccCCCEEE------------------EeecceEEEEEEe
Confidence            366777666666665532  123334444444444443   333333                  3567777777764

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.35  E-value=1.8e-10  Score=122.41  Aligned_cols=218  Identities=11%  Similarity=0.156  Sum_probs=135.8

Q ss_pred             CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------C-CCEEEEcCCCCcchHHH-H--------H
Q 012296          207 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIF-I--------E  267 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g--~e~~l~~sSGs~Ai~~al~all~-------~-Gd~Vlv~~~~y~~t~~~-~--------~  267 (466)
                      +.++...+|.++|+++..  .+.+.+++||++|+..++.....       + ..+||.....|++.... +        .
T Consensus        89 ~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~  168 (445)
T PRK09221         89 MGHPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNR  168 (445)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhh
Confidence            457888889999999874  36788889999999998874331       1 25788888888873211 1        0


Q ss_pred             hhcccCCceEEEeCCC------------------CHHHHHHhhcC---CCceEEEEeCCCCCCccccc----HHHHHHHH
Q 012296          268 TVLPKMGITATVIDPA------------------DMEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLC  322 (466)
Q Consensus       268 ~~l~~~Gi~v~~vd~~------------------Dle~Le~ai~~---~~tklV~lesP~NPtG~v~d----l~~Ia~la  322 (466)
                      .........+..++..                  ..+++++.++.   +++.+|++|......|.+.+    +++|.++|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc  248 (445)
T PRK09221        169 KMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREIC  248 (445)
T ss_pred             hccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHH
Confidence            0000000111122111                  13566776642   34889999998888888887    99999999


Q ss_pred             HhcCCEEEEeCCCCCC------CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHH-------HHHhCC
Q 012296          323 HKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-------HHVLGG  389 (466)
Q Consensus       323 ~~~gillIvDea~a~~------~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~-------~~~~G~  389 (466)
                      +++|+++|+||++...      +...-.....|+++  ++|.++++. ...|.+++++++++.+..-       ....-.
T Consensus       249 ~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~--~gK~l~gG~-~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~  325 (445)
T PRK09221        249 DKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIIT--FAKGLTNGA-IPMGAVIASDEIYDAFMQGPEYAIEFFHGYTY  325 (445)
T ss_pred             HHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEE--eccccccCc-ccceeeEEcHHHHHhhccCcccccccccccCC
Confidence            9999999999996421      11122222357765  789997642 2356778888888876421       011111


Q ss_pred             CchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHcC
Q 012296          390 ALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       390 ~lsp~~a~l~l~~L~tl~--~R~~~~~~na~~La~~L~~~  427 (466)
                      ..+|..+..++..|+.+.  ..+++..+..+.+.+.|++.
T Consensus       326 ~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l  365 (445)
T PRK09221        326 SAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSL  365 (445)
T ss_pred             CcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Confidence            235666666665665553  23455556666666666543

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.34  E-value=2.2e-10  Score=122.03  Aligned_cols=227  Identities=18%  Similarity=0.209  Sum_probs=137.0

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchH-HHHHhh----cc-cC
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTR-IFIETV----LP-KM  273 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~-~~~~~~----l~-~~  273 (466)
                      ..++.++...+|.++|+++.+.  +.+++.+||++|+..++....  ....+||.....|++.. ..+...    .. .+
T Consensus       107 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~  186 (459)
T PRK06082        107 PRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGM  186 (459)
T ss_pred             cCccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCC
Confidence            3466788899999999999853  567778899999998886432  23467888888887742 111100    00 00


Q ss_pred             C---ceEEEeC--------CCC--------HHHHHHhhcC-CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEE
Q 012296          274 G---ITATVID--------PAD--------MEGLEAALNN-NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVC  330 (466)
Q Consensus       274 G---i~v~~vd--------~~D--------le~Le~ai~~-~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillI  330 (466)
                      +   -.+..++        ..+        ++.+++.++. .++.+|++|...+..+.+.+   +++|.++|++||+++|
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI  266 (459)
T PRK06082        187 GPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLI  266 (459)
T ss_pred             CCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence            0   0111121        111        3457777752 24889999988765444455   8999999999999999


Q ss_pred             EeCCCCCC----C--cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH
Q 012296          331 IDGTFATP----L--NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK  404 (466)
Q Consensus       331 vDea~a~~----~--~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~  404 (466)
                      +||++.+.    .  .........|+++  ++|.++++. ...|.+++++++...............+|..+.+++..|+
T Consensus       267 ~DEV~tG~GRtG~~fa~e~~gv~PDiv~--~gKgl~gG~-~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~  343 (459)
T PRK06082        267 IDEIPNGMGRTGEWFTHQAYGIEPDILC--IGKGLGGGL-VPIAAMITKDKYNTAAQISLGHYTHEKSPLGCAAALATIE  343 (459)
T ss_pred             EechhhCCCccchhhHhHhhCCCCCEEE--ecccccCCC-CcceEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHH
Confidence            99996531    1  1122233478887  799999752 2357777777766433210001112346666666666666


Q ss_pred             HHHH--HHHHHHHHHHHHHHHHHc----CCCeEEE
Q 012296          405 TLHL--RVQQQNSTALRMAKILEA----HPKVKRV  433 (466)
Q Consensus       405 tl~~--R~~~~~~na~~La~~L~~----~p~V~~V  433 (466)
                      .+..  .+++..+..+++.+.|++    +|.|..|
T Consensus       344 ~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v  378 (459)
T PRK06082        344 VIEQEGLLEKVKADSQFMRERLLEMKAKYPLIGDV  378 (459)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCeeee
Confidence            5532  344455555555555543    4545444

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.34  E-value=2.5e-10  Score=120.66  Aligned_cols=217  Identities=15%  Similarity=0.145  Sum_probs=134.6

Q ss_pred             CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc-------CCCEEEEcCCCCcchHHHHHhh-------
Q 012296          206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------AGGHIVTTTDCYRKTRIFIETV-------  269 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~-------~Gd~Vlv~~~~y~~t~~~~~~~-------  269 (466)
                      .+.++...+|.++|+++.+.  +.+.+.+||++|+..++.....       ...+||.....|++........       
T Consensus        82 ~~~~~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~  161 (428)
T PRK07986         82 GITHPPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSM  161 (428)
T ss_pred             ccCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhh
Confidence            34678888899999998753  5778889999999998874432       2367999898888732111000       


Q ss_pred             ---cccCCceEEEeC-----------CCCHHHHHHhhcC--CCceEEEEeCC-CCCCcccc----cHHHHHHHHHhcCCE
Q 012296          270 ---LPKMGITATVID-----------PADMEGLEAALNN--NNVSLFFTESP-TNPFLRCV----DVKLVSDLCHKKGAI  328 (466)
Q Consensus       270 ---l~~~Gi~v~~vd-----------~~Dle~Le~ai~~--~~tklV~lesP-~NPtG~v~----dl~~Ia~la~~~gil  328 (466)
                         .....-.+.+++           ..|++++++.++.  .++.+|++|.. ..-.|.+.    .+++|.++|+++|++
T Consensus       162 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~l  241 (428)
T PRK07986        162 HSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGIL  241 (428)
T ss_pred             hhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence               000000111121           1256777877752  24789999985 54445432    289999999999999


Q ss_pred             EEEeCCCCCCCc-------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH---HHhC--CCchHHHH
Q 012296          329 VCIDGTFATPLN-------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLG--GALNPNAA  396 (466)
Q Consensus       329 lIvDea~a~~~~-------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~---~~~G--~~lsp~~a  396 (466)
                      +|+||++.+ +.       ........|+++  ++|.++|+ -+..|.+++++++++.+....   ...+  ...+|..+
T Consensus       242 LI~DEv~tG-~GrtG~~fa~~~~gv~PDi~t--~gK~l~gG-~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~  317 (428)
T PRK07986        242 LIADEIATG-FGRTGKLFACEHAGIAPDILC--LGKALTGG-TMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLAC  317 (428)
T ss_pred             EEEeccccC-CccCCCeeeecccCCCCCEEE--echhhhCC-cccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHH
Confidence            999999632 21       111223367875  89999753 234677788899988875411   0111  12356766


Q ss_pred             HHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc
Q 012296          397 YLIIRGMKTLHL--RVQQQNSTALRMAKILEA  426 (466)
Q Consensus       397 ~l~l~~L~tl~~--R~~~~~~na~~La~~L~~  426 (466)
                      ..++..|+.+..  .+++..+..+++.+.|++
T Consensus       318 aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~  349 (428)
T PRK07986        318 AVANASLSLLESGDWQQQVAAIEAQLREELAP  349 (428)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            666666665542  345555555666666654

>PRK07678 aminotransferase; Validated

Probab=99.34  E-value=2.4e-10  Score=121.62  Aligned_cols=224  Identities=13%  Similarity=0.155  Sum_probs=137.0

Q ss_pred             CCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHHcc-------CC-CEEEEcCCCCcchHHHHHhh--------
Q 012296          207 YGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETV--------  269 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~-e~~l~~sSGs~Ai~~al~all~-------~G-d~Vlv~~~~y~~t~~~~~~~--------  269 (466)
                      +.++...+|.++|.++.+. +.+.+.+||++|+..++.....       +| .+||.....|++........        
T Consensus        86 ~~~~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~  165 (451)
T PRK07678         86 QSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKY  165 (451)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCccccc
Confidence            4677788899999998865 4566778999999998875421       23 57888888888843211110        


Q ss_pred             -cccCCceEEEeCCC--------------C---HHHHHHhhc---CCCceEEEEeCCCCCCccccc----HHHHHHHHHh
Q 012296          270 -LPKMGITATVIDPA--------------D---MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHK  324 (466)
Q Consensus       270 -l~~~Gi~v~~vd~~--------------D---le~Le~ai~---~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~  324 (466)
                       .....-.+..++..              +   ++.+++.++   ..++.+|++|......|.+.+    +++|.++|++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~  245 (451)
T PRK07678        166 KYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQK  245 (451)
T ss_pred             ccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHH
Confidence             00000011112110              1   233566664   235899999988766676654    8999999999


Q ss_pred             cCCEEEEeCCCCCC-----C-cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH----HhC--CCch
Q 012296          325 KGAIVCIDGTFATP-----L-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH----VLG--GALN  392 (466)
Q Consensus       325 ~gillIvDea~a~~-----~-~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~----~~G--~~ls  392 (466)
                      ||+++|+||++.+.     + ...-.....|+++  ++|.++++. +..|.+++++++++.+.....    ..+  ...+
T Consensus       246 ~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt--~gK~lggG~-~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gn  322 (451)
T PRK07678        246 HGALLISDEVICGFGRTGKAFGFMNYGVKPDIIT--MAKGITSAY-LPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGN  322 (451)
T ss_pred             cCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEE--eecccccCC-cceeEEEEcHHHHHHHhccCcccccccCCCCCcC
Confidence            99999999996421     1 1122333478886  689999853 346888889999887753110    112  1245


Q ss_pred             HHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHH----HcCCCeEEE
Q 012296          393 PNAAYLIIRGMKTLHL--RVQQQNSTALRMAKIL----EAHPKVKRV  433 (466)
Q Consensus       393 p~~a~l~l~~L~tl~~--R~~~~~~na~~La~~L----~~~p~V~~V  433 (466)
                      |..+..++..|+.+..  .+++..+..++|.+.|    +++|.|..|
T Consensus       323 p~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~v  369 (451)
T PRK07678        323 PAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDI  369 (451)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence            6766666666665542  2334444444554444    345655444

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.34  E-value=3e-10  Score=119.97  Aligned_cols=223  Identities=19%  Similarity=0.254  Sum_probs=145.3

Q ss_pred             CCchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhc--c--------cC
Q 012296          207 YGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL--P--------KM  273 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g-~e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l--~--------~~  273 (466)
                      ..++...+|.++|.++.. .+.+.+++||++|+..++....  ....+||.....|++........-  .        ..
T Consensus        90 ~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~  169 (428)
T PRK12389         90 TPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSA  169 (428)
T ss_pred             CCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCC
Confidence            467778888888888764 4678888999999999887442  234678888888888432211110  0        01


Q ss_pred             Cc------eEEEeCCCCHHHHHHhhcC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC---
Q 012296          274 GI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP---  338 (466)
Q Consensus       274 Gi------~v~~vd~~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~---  338 (466)
                      ++      .+..++..|++.+++.++.  .++.+|++|...+..|.+.+    +++|.++|+++|+++|+||++...   
T Consensus       170 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~  249 (428)
T PRK12389        170 GVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFM  249 (428)
T ss_pred             CCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccC
Confidence            11      2344556688999888852  24889999998877888877    999999999999999999996532   


Q ss_pred             Cc--ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH-HhCC--CchHHHHHHHHHhhHHHHH--HHH
Q 012296          339 LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGG--ALNPNAAYLIIRGMKTLHL--RVQ  411 (466)
Q Consensus       339 ~~--~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~-~~G~--~lsp~~a~l~l~~L~tl~~--R~~  411 (466)
                      ..  ........|++  +++|.++++  ...|.+++++++++.+..... ..+.  ..+|..+.+++..|+.+..  .++
T Consensus       250 ~~~a~~~~gv~PDiv--t~gK~lggG--~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~  325 (428)
T PRK12389        250 YGGAQDLLGVEPDLT--ALGKIIGGG--LPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYE  325 (428)
T ss_pred             cchhhHHhCCCCCee--eechhhcCC--CceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHH
Confidence            11  11223346876  478999874  345777889999887742111 1121  3466766666666665532  344


Q ss_pred             HHHHHHHHHHHHHHc----CCCeEEE
Q 012296          412 QQNSTALRMAKILEA----HPKVKRV  433 (466)
Q Consensus       412 ~~~~na~~La~~L~~----~p~V~~V  433 (466)
                      +..+..+++.+.|++    +|.+..+
T Consensus       326 ~~~~~g~~l~~~L~~l~~~~~~~~~v  351 (428)
T PRK12389        326 KLDRLGAMLEEGILEAAEKHGITITI  351 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            555555666665653    5644333

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=8.7e-12  Score=127.81  Aligned_cols=211  Identities=20%  Similarity=0.240  Sum_probs=166.4

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHH
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~L  288 (466)
                      .....++|+.+|++.|.+++++|+-|-+.+.+.+.+++.||.-|+.+.-.|.+.+    .-++..|..++....+|+++|
T Consensus       181 ~~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p~l~~~gsLIiSDelNHaSi~----~GaRLSgAtiRVfkHNdm~~L  256 (519)
T KOG1357|consen  181 TEEHKELEELVARFLGVEDAIVFSMGFATNSMNIPSLLGKGSLIISDELNHASLI----TGARLSGATTRVFRHNDMQGL  256 (519)
T ss_pred             HHHHHHHHHHHHHhcCCcceEEEeccccccccCcceeecCCcceeeccccchhee----ccccccCceEEEEecCCHHHH
Confidence            3567789999999999999999999998888889999999999998888887644    334556888888889999999


Q ss_pred             HHhhcCC------------CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc----------cccccc
Q 012296          289 EAALNNN------------NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----------QKALSL  346 (466)
Q Consensus       289 e~ai~~~------------~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~----------~~~l~~  346 (466)
                      |+.|++.            +--+|++|.....-|.+.++.++.++++++..+|+.||++..+..          ......
T Consensus       257 Er~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~  336 (519)
T KOG1357|consen  257 ERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPE  336 (519)
T ss_pred             HHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCch
Confidence            9888532            123677788888889999999999999999999999999654332          112233


Q ss_pred             CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHHH---------HHHHHHHHH
Q 012296          347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---------HLRVQQQNS  415 (466)
Q Consensus       347 gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--~~G~~lsp~~a~l~l~~L~tl---------~~R~~~~~~  415 (466)
                      .+||++..++|.+++.    ||++.+++++++.++....  ..+..++|-.+...+.+++.+         .++++++.+
T Consensus       337 dvDImMGtftKSfga~----GGyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~  412 (519)
T KOG1357|consen  337 DVDIMMGTFTKSFGAA----GGYIAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAE  412 (519)
T ss_pred             hheeecceehhhcccc----cceecCcHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHh
Confidence            5789999999999986    5999999999998775332  344566666666666666543         467888889


Q ss_pred             HHHHHHHHHHcC
Q 012296          416 TALRMAKILEAH  427 (466)
Q Consensus       416 na~~La~~L~~~  427 (466)
                      |...+...|++.
T Consensus       413 ns~yfr~~l~~~  424 (519)
T KOG1357|consen  413 NSRYFRWELQKM  424 (519)
T ss_pred             hhHHHHHhhhcC
Confidence            999888888765

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.33  E-value=1.4e-10  Score=121.83  Aligned_cols=231  Identities=18%  Similarity=0.233  Sum_probs=144.2

Q ss_pred             hhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHH--ccCCCEEEEcCCCCcc-hHHHHHhh---cc------cCC
Q 012296          210 PTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRK-TRIFIETV---LP------KMG  274 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~al--l~~Gd~Vlv~~~~y~~-t~~~~~~~---l~------~~G  274 (466)
                      +...++.++|.++...   +.+++.+||++|+.+++...  ......||.....|++ |...+...   ..      .+.
T Consensus        99 e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~  178 (447)
T COG0160          99 EPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLP  178 (447)
T ss_pred             hhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCC
Confidence            6677788888887653   56888899999999998743  2345678888888887 22222110   01      111


Q ss_pred             ceEEEeCCC-----------------CHHHHHHhhcC-----CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCE
Q 012296          275 ITATVIDPA-----------------DMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAI  328 (466)
Q Consensus       275 i~v~~vd~~-----------------Dle~Le~ai~~-----~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gil  328 (466)
                      -.+..++..                 ..+.++..+..     .++.+|++|......|.+.+    +++|.++|++||++
T Consensus       179 ~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gil  258 (447)
T COG0160         179 PGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGIL  258 (447)
T ss_pred             CCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence            113333211                 13345554432     24899999999988888875    78999999999999


Q ss_pred             EEEeCCCCC----CCc--ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHH-HHHHHhCCCchHHHHHHHHH
Q 012296          329 VCIDGTFAT----PLN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR-NLHHVLGGALNPNAAYLIIR  401 (466)
Q Consensus       329 lIvDea~a~----~~~--~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~-~~~~~~G~~lsp~~a~l~l~  401 (466)
                      +|+||++.+    +-.  ..-...-.||++  ++|.+++ | ...|.+++++++++... .+...+|+  +|..+..++.
T Consensus       259 lI~DEVQtG~GRTG~~fa~E~~gv~PDivt--~aK~ig~-G-~Pl~avv~r~ei~~~~~g~~~~Tf~G--Npva~Aaa~A  332 (447)
T COG0160         259 LIADEVQTGFGRTGKMFAFEHFGVEPDIVT--LAKSLGG-G-LPLSAVVGRAEIMDWPPGGHGGTFGG--NPVACAAALA  332 (447)
T ss_pred             EEEeccccCCCccccchhhhhcCCCCCEEE--ecccccC-C-CceeEEeccHHhcccCCcccCCCCCc--CHHHHHHHHH
Confidence            999999653    111  222223468888  7799998 3 46788999999887211 12223444  5666666666


Q ss_pred             hhHHHHH--HHHHHHHHHHHHHHHHH----cCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          402 GMKTLHL--RVQQQNSTALRMAKILE----AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       402 ~L~tl~~--R~~~~~~na~~La~~L~----~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      .|+.++.  .+++..+.-++|.+.|+    ++|.|.-|                  +|.|.|+.+|+..
T Consensus       333 vL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdV------------------RG~Glm~giE~v~  383 (447)
T COG0160         333 VLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDV------------------RGLGLMIGVELVK  383 (447)
T ss_pred             HHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCceecc------------------cccceEEEEEEec
Confidence            6665543  22333333333444443    34544433                  7888888888864

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.33  E-value=2.7e-10  Score=120.84  Aligned_cols=232  Identities=13%  Similarity=0.095  Sum_probs=137.4

Q ss_pred             CCchhHHHHHHHHHhhhCC----CcEEEe-CCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhcc----c--C
Q 012296          207 YGNPTTVVVEEKMSALEGA----ESTVIM-ASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP----K--M  273 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~----e~~l~~-sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l~----~--~  273 (466)
                      +.++...+|.++|+++...    ...+++ +||++|+..+++...  ....+|+.....|++..........    +  .
T Consensus        79 ~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~  158 (442)
T TIGR00709        79 LTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAV  158 (442)
T ss_pred             cCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccC
Confidence            5678888899999998753    244554 799999999887442  2345788888888884322211110    0  0


Q ss_pred             C---ceEEEeCCCC-------------H----HHHHHhhc-----CCCceEEEEeCCCCCCcccc-c---HHHHHHHHHh
Q 012296          274 G---ITATVIDPAD-------------M----EGLEAALN-----NNNVSLFFTESPTNPFLRCV-D---VKLVSDLCHK  324 (466)
Q Consensus       274 G---i~v~~vd~~D-------------l----e~Le~ai~-----~~~tklV~lesP~NPtG~v~-d---l~~Ia~la~~  324 (466)
                      +   ..+.+++..+             .    +.+++.++     ..++.+|++|.+.+..|.+. +   +++|.++|++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~  238 (442)
T TIGR00709       159 GMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRK  238 (442)
T ss_pred             CCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence            0   0122222111             1    12334442     12488999998877767654 3   7899999999


Q ss_pred             cCCEEEEeCCCCCCC----c--ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCC--CchHHHH
Q 012296          325 KGAIVCIDGTFATPL----N--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG--ALNPNAA  396 (466)
Q Consensus       325 ~gillIvDea~a~~~----~--~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~--~lsp~~a  396 (466)
                      ||+++|.||++...-    .  ......-.|+++  ++|.+++ | ...|+++++++ ++.+...  ..+.  ..+|..+
T Consensus       239 ~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~~-G-~Pigav~~~~~-~~~~~~~--~~~~T~~gnpla~  311 (442)
T TIGR00709       239 HDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVV--MSKAVGG-G-LPLAVLLIAPE-FDAWQPA--GHTGTFRGNQLAM  311 (442)
T ss_pred             cCCEEEEeccccCCCCCCchhHHHHcCCCCcEEE--EcccccC-C-cccEEEEEchH-HhccCCC--cCCCCCCcCHHHH
Confidence            999999999965321    1  111223468888  7899998 4 45677777777 4433211  1121  2356666


Q ss_pred             HHHHHhhHHHHH--HHHHHHHHHHHHHHHHH----cCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEec
Q 012296          397 YLIIRGMKTLHL--RVQQQNSTALRMAKILE----AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVL  463 (466)
Q Consensus       397 ~l~l~~L~tl~~--R~~~~~~na~~La~~L~----~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~  463 (466)
                      .+++..|+.+..  -.++..+..+.+.+.|+    ++|.|..|                  +|.|.|++|++.
T Consensus       312 aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~v------------------rG~Gl~~~ie~~  366 (442)
T TIGR00709       312 VTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIGNV------------------RGRGLMQGIMIV  366 (442)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeeee------------------eccceEEEEEEc
Confidence            666666665432  23334444455555554    34545444                  566666666663

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.32  E-value=5.9e-11  Score=122.68  Aligned_cols=204  Identities=11%  Similarity=0.035  Sum_probs=140.3

Q ss_pred             hhHHHHHHHHHhhhCC-C--cEEEe-CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC---
Q 012296          210 PTTVVVEEKMSALEGA-E--STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~-e--~~l~~-sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---  282 (466)
                      ...+++++.++++++. +  +++++ ++|+.|+.+++..++.+||++++......+.+ + ...++++|.. ..+..   
T Consensus        48 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~r-~-~~~a~~~g~~-~~~~~~~~  124 (360)
T PRK05355         48 AVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSKK-A-IKEAKKYGEV-NVAASSED  124 (360)
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHH-H-HHHHHHhCCc-eEEecccc
Confidence            5677889999999996 2  34444 67779999999999999998887766655533 2 3556677755 33321   


Q ss_pred             ---CCHHHHHH-hhcCCCceEEEEeCCCCCCcccc-cHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEECCc
Q 012296          283 ---ADMEGLEA-ALNNNNVSLFFTESPTNPFLRCV-DVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSAT  356 (466)
Q Consensus       283 ---~Dle~Le~-ai~~~~tklV~lesP~NPtG~v~-dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S~s  356 (466)
                         .+..++++ +++++ +++|.+.+-.+.||... |+++|      +|+++++|.+.+.+. ..+..++  |+++.|.+
T Consensus       125 ~g~~~~~~~~~~~l~~~-~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~idv~~~--d~~~~ssq  195 (360)
T PRK05355        125 DGFTYIPPLDEWQLSDD-AAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPIDVSKF--GLIYAGAQ  195 (360)
T ss_pred             cCCCCCCChhhccCCCC-CCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccCCHHHc--cEEEEecc
Confidence               12334444 67764 89999988889999998 77766      899999999976543 3333343  69999999


Q ss_pred             cccCccccceeEEEEeCHHHHHHHHHH-H----------H-HhCCCchHHHHHHHHHhhHH------HHHHHHHHHHHHH
Q 012296          357 KFIGGHNDVLAGSISGSGKLVTQIRNL-H----------H-VLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTAL  418 (466)
Q Consensus       357 K~lgg~gdv~gG~ivg~~eli~~l~~~-~----------~-~~G~~lsp~~a~l~l~~L~t------l~~R~~~~~~na~  418 (466)
                      |+||++|   .|+++.++++++++... .          . ...++.+-...+.+...|+.      ++.+.+++.+.++
T Consensus       196 K~lgP~G---lg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~  272 (360)
T PRK05355        196 KNIGPAG---LTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAA  272 (360)
T ss_pred             ccccCCc---eEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            9998665   68999999887765431 1          0 01123333333333333332      4566777888899


Q ss_pred             HHHHHHHcCC
Q 012296          419 RMAKILEAHP  428 (466)
Q Consensus       419 ~La~~L~~~p  428 (466)
                      .+.++|++.+
T Consensus       273 ~l~~~l~~~~  282 (360)
T PRK05355        273 LLYDAIDSSD  282 (360)
T ss_pred             HHHHHHHhCC
Confidence            9999999876

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.32  E-value=5.5e-11  Score=121.86  Aligned_cols=170  Identities=25%  Similarity=0.358  Sum_probs=123.7

Q ss_pred             HHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcC-----CCCcchHHHHHhhcccCCceEEEeCC---CCH
Q 012296          214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTT-----DCYRKTRIFIETVLPKMGITATVIDP---ADM  285 (466)
Q Consensus       214 ~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~-----~~y~~t~~~~~~~l~~~Gi~v~~vd~---~Dl  285 (466)
                      .+.+.++.+.++++++++++-++|+.+++.++.. +.++|++.     +.++...    ..++..|.++..+..   ...
T Consensus        72 ~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~~-~~EvVis~g~lV~gg~~~v~----d~~~~aG~~l~EvG~tn~t~~  146 (395)
T COG1921          72 ELAELLCGLTGAEAAAIVNNNAAAVLLTLNALAE-GKEVVVSRGELVEGGAFRVP----DIIRLAGAKLVEVGTTNRTHL  146 (395)
T ss_pred             HHHHHHhcccchhheeeECCcHHHHHHHHhhhcc-CCeEEEEccccccCCCCChh----HHHHHcCCEEEEecccCcCCH
Confidence            4566666677788999999999999999888776 44555543     1222333    445556777666643   368


Q ss_pred             HHHHHhhcCCCceEEEEeCCCCC-CcccccHHHHHHHHHhcCCEEEEeCCCCCC-----CcccccccCCcEEEECCcccc
Q 012296          286 EGLEAALNNNNVSLFFTESPTNP-FLRCVDVKLVSDLCHKKGAIVCIDGTFATP-----LNQKALSLGADLVLHSATKFI  359 (466)
Q Consensus       286 e~Le~ai~~~~tklV~lesP~NP-tG~v~dl~~Ia~la~~~gillIvDea~a~~-----~~~~~l~~gaDivv~S~sK~l  359 (466)
                      .+++.+|.++ +++++--.-+|. .-...++++++++||++|+++++|.+-+..     -.+..++.|+|+|++|..|.|
T Consensus       147 ~d~~~AIne~-ta~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKll  225 (395)
T COG1921         147 KDYELAINEN-TALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLL  225 (395)
T ss_pred             HHHHHHhccC-CeeEEEEeeccccccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhc
Confidence            8999999986 776665444443 223357889999999999999999997543     234456789999999999999


Q ss_pred             CccccceeEEEEeCHHHHHHHHHHHHHhCCCch
Q 012296          360 GGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN  392 (466)
Q Consensus       360 gg~gdv~gG~ivg~~eli~~l~~~~~~~G~~ls  392 (466)
                      +||.   +|+++|++++++++++..-..+.-..
T Consensus       226 gGPq---aGii~GkKelI~~lq~~~l~Ralrv~  255 (395)
T COG1921         226 GGPQ---AGIIVGKKELIEKLQSHPLKRALRVD  255 (395)
T ss_pred             CCCc---cceEechHHHHHHHHhhhhhhhhhcC
Confidence            9995   99999999999998875544443333

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.32  E-value=3.5e-10  Score=120.38  Aligned_cols=218  Identities=13%  Similarity=0.150  Sum_probs=133.7

Q ss_pred             CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc-------C-CCEEEEcCCCCcchHHHHHhh------
Q 012296          206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETV------  269 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~-------~-Gd~Vlv~~~~y~~t~~~~~~~------  269 (466)
                      .+.++...+|.++|+++.+.  +.+.+++||++|+..++.....       + ..+||.....|++........      
T Consensus        93 ~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~  172 (453)
T PRK06943         93 GCTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALF  172 (453)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhh
Confidence            34677888899999998764  4688889999999998875421       2 367999998888832111000      


Q ss_pred             ---cccCCceEEEeCC-----------------CCHHHHHHhhcC--CCceEEEEeC-CCCCCccccc----HHHHHHHH
Q 012296          270 ---LPKMGITATVIDP-----------------ADMEGLEAALNN--NNVSLFFTES-PTNPFLRCVD----VKLVSDLC  322 (466)
Q Consensus       270 ---l~~~Gi~v~~vd~-----------------~Dle~Le~ai~~--~~tklV~les-P~NPtG~v~d----l~~Ia~la  322 (466)
                         ....-..+..++.                 .+++++++.++.  .++.+|++|. +....|.+.+    +++|.++|
T Consensus       173 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc  252 (453)
T PRK06943        173 KDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALC  252 (453)
T ss_pred             hcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHH
Confidence               0000001111211                 124677777752  2489999998 4655666543    78999999


Q ss_pred             HhcCCEEEEeCCCCCC------CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH----HHhCCC--
Q 012296          323 HKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH----HVLGGA--  390 (466)
Q Consensus       323 ~~~gillIvDea~a~~------~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~----~~~G~~--  390 (466)
                      ++||+++|.||++.+.      +.........|+++  +.|.++++ -+..|.+++++++++.+..-.    ...+.+  
T Consensus       253 ~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt--~gKgl~gG-~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~  329 (453)
T PRK06943        253 DRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLC--LSKGISGG-YLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYT  329 (453)
T ss_pred             HHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEe--eehhhccC-cccceEEEEcHHHHHhhcccCccCCccCCCCCC
Confidence            9999999999995431      11222333478888  58999864 234678888999887764210    011221  


Q ss_pred             chHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc
Q 012296          391 LNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA  426 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~--R~~~~~~na~~La~~L~~  426 (466)
                      -+|..+.+++..|+.+..  -+++..+.-+++.+.|++
T Consensus       330 gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~  367 (453)
T PRK06943        330 GNPLACRAALATLDLFAEDDVLARNARKSARLRAALAP  367 (453)
T ss_pred             CCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            356666666666665532  234444444555555543

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.32  E-value=1.5e-10  Score=119.87  Aligned_cols=222  Identities=20%  Similarity=0.266  Sum_probs=151.7

Q ss_pred             CCccccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHH--ccCCCEEEEcCCCCcchHHHHHhhc------
Q 012296          200 ASFEYGRYGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVL------  270 (466)
Q Consensus       200 ~~~~Y~R~~np~~~~Lee~LA~l~g~-e~~l~~sSGs~Ai~~al~al--l~~Gd~Vlv~~~~y~~t~~~~~~~l------  270 (466)
                      .+..|+. ++..--++.+.|.++.+. +..-+++||++|...+++..  ...-|+|+....+|++....+--..      
T Consensus        84 ~G~~fg~-Pte~Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t  162 (432)
T COG0001          84 RGLSFGA-PTELEVELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAAT  162 (432)
T ss_pred             hcCCCCC-CCHHHHHHHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCccc
Confidence            3566775 344445567888888877 88999999999988888643  3456899999999998654432111      


Q ss_pred             ----ccCCc------eEEEeCCCCHHHHHHhhcCC--CceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCC
Q 012296          271 ----PKMGI------TATVIDPADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGT  334 (466)
Q Consensus       271 ----~~~Gi------~v~~vd~~Dle~Le~ai~~~--~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea  334 (466)
                          ...|+      .+..++-+|++.+++++++.  ++.+|++|..-.-.|.+.|    ++.|.++|+++|++||.||+
T Consensus       163 ~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEV  242 (432)
T COG0001         163 LGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEV  242 (432)
T ss_pred             CCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecc
Confidence                11122      23445677999999999764  5899999877655677665    78999999999999999999


Q ss_pred             CCCC-----CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHh-CCCc--hHHHHHHHHHhhHHH
Q 012296          335 FATP-----LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL-GGAL--NPNAAYLIIRGMKTL  406 (466)
Q Consensus       335 ~a~~-----~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~-G~~l--sp~~a~l~l~~L~tl  406 (466)
                      ....     -.+......+|+.+  +.|.+||+  +..|++.+++|+++.+......+ ++++  +|....+....++.+
T Consensus       243 iTGFR~~~gGaq~~~gi~PDltt--lGKiIGGG--lP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l  318 (432)
T COG0001         243 ITGFRVALGGAQGYYGVEPDLTT--LGKIIGGG--LPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEEL  318 (432)
T ss_pred             hhhcccCCcccccccCcCcchhh--hhhhhcCC--cceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHH
Confidence            5421     12333344456665  88999986  47899999999999776544332 2222  454444444444444


Q ss_pred             HH---HHHHHHHHHHHHHHHHHc
Q 012296          407 HL---RVQQQNSTALRMAKILEA  426 (466)
Q Consensus       407 ~~---R~~~~~~na~~La~~L~~  426 (466)
                      ..   -.++..+.+++|.+.|++
T Consensus       319 ~~~~~~y~~l~~~~~~L~~gl~~  341 (432)
T COG0001         319 MTEEGVYERLDALGERLAEGLRA  341 (432)
T ss_pred             HhcccHHHHHHHHHHHHHHHHHH
Confidence            43   356666777777777765

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.31  E-value=6.3e-11  Score=126.31  Aligned_cols=158  Identities=22%  Similarity=0.304  Sum_probs=125.2

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC-------
Q 012296          210 PTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-------  281 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd-------  281 (466)
                      ....+.++..|+.+|++...++.+|+ .|+..++++++++||.|++++++|.+....    +-..|....|+.       
T Consensus        70 G~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~g----lilaGa~Pvyl~p~~np~~  145 (557)
T COG1982          70 GPIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHG----LILAGATPVYLEPSRNPLY  145 (557)
T ss_pred             ccHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHH----HHHcCCceEEecCCCCccc
Confidence            34678999999999999999999999 899999999999999999999999986543    223455555553       


Q ss_pred             ----CCCHHHHHHhhcCCC-c-eEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC------cccccccCCc
Q 012296          282 ----PADMEGLEAALNNNN-V-SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL------NQKALSLGAD  349 (466)
Q Consensus       282 ----~~Dle~Le~ai~~~~-t-klV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~------~~~~l~~gaD  349 (466)
                          ..+.+.+++++.+++ . |++++.+|+ ..|.+.++++|.+++++.++++.+|++.....      .......++|
T Consensus       146 gi~ggI~~~~~~~~l~~~~~~~k~~vitnpT-YdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~  224 (557)
T COG1982         146 GIIGGIPLETFKEALLAHPDAEKLAVITNPT-YDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGAD  224 (557)
T ss_pred             cccCCCCHHHHHHHHHhChhhheeEEEecCc-cceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCce
Confidence                236788888775442 4 788887776 57999999999999999999999999954322      1223346899


Q ss_pred             EEEECCccccCccccceeEEEEeCH
Q 012296          350 LVLHSATKFIGGHNDVLAGSISGSG  374 (466)
Q Consensus       350 ivv~S~sK~lgg~gdv~gG~ivg~~  374 (466)
                      +++.|.||.+++.+  .+.+|..+.
T Consensus       225 ~~tqS~HK~l~alS--QaS~iHv~~  247 (557)
T COG1982         225 FVTQSTHKLLAALS--QASMIHVKD  247 (557)
T ss_pred             EEEechhhhhhhhh--hhHHHhhCC
Confidence            99999999999876  567776553

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.31  E-value=7.7e-10  Score=117.41  Aligned_cols=214  Identities=14%  Similarity=0.138  Sum_probs=131.6

Q ss_pred             CCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhc-----cc--C
Q 012296          206 RYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL-----PK--M  273 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g---~e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l-----~~--~  273 (466)
                      .+.++...+|.++|.++..   .+.+.+++||++|+..++....  ...++|+.....|++........-     ..  +
T Consensus        93 ~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~  172 (441)
T PRK05769         93 DFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGF  172 (441)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCC
Confidence            3567888899999999875   3677888999999999887432  234678888888887432211110     00  0


Q ss_pred             ---CceEEEeCC----------CC--------HHHHHH-hhc----CCCceEEEEeCCCCCCccccc----HHHHHHHHH
Q 012296          274 ---GITATVIDP----------AD--------MEGLEA-ALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCH  323 (466)
Q Consensus       274 ---Gi~v~~vd~----------~D--------le~Le~-ai~----~~~tklV~lesP~NPtG~v~d----l~~Ia~la~  323 (466)
                         .-.+..++.          .+        ++.+++ .++    ..++.+|++|......|.+.+    +++|.++|+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~  252 (441)
T PRK05769        173 FPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLAD  252 (441)
T ss_pred             CCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHH
Confidence               001222221          11        233555 222    235899999998877888887    999999999


Q ss_pred             hcCCEEEEeCCCCCCC------cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHH-HHHhCCCchHHHH
Q 012296          324 KKGAIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-HHVLGGALNPNAA  396 (466)
Q Consensus       324 ~~gillIvDea~a~~~------~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~-~~~~G~~lsp~~a  396 (466)
                      ++|+++|+||++....      .........|+++  ++|.++++  ...|++++++++++.+... ...++  .+|..+
T Consensus       253 ~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt--~~K~l~~G--~p~gav~~~~~i~~~~~~~~~~T~~--g~p~~~  326 (441)
T PRK05769        253 KYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIIT--LAKAIAGG--LPLGAVIGRAELMFLPPGSHANTFG--GNPVAA  326 (441)
T ss_pred             HcCCEEEEechhhCCCcccceehhhccCCCCCEEE--EcccccCC--cccEEEEEehhhhhcCCCCCCCCCC--cCHHHH
Confidence            9999999999966311      1111222358875  67999864  4568888888876533211 11122  256666


Q ss_pred             HHHHHhhHHHHH-HHHHHHHHHHHHHHHHH
Q 012296          397 YLIIRGMKTLHL-RVQQQNSTALRMAKILE  425 (466)
Q Consensus       397 ~l~l~~L~tl~~-R~~~~~~na~~La~~L~  425 (466)
                      ..++..|+.+.. .+++..+..+++.+.|+
T Consensus       327 aaa~a~L~~l~~~~~~~~~~~g~~l~~~L~  356 (441)
T PRK05769        327 AAALATLEELEEGLLENAQKLGEYLRKELK  356 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655555555532 33444455555555554

>PRK07480 putative aminotransferase; Validated

Probab=99.31  E-value=7.1e-10  Score=118.14  Aligned_cols=236  Identities=17%  Similarity=0.211  Sum_probs=142.0

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc-------CC-CEEEEcCCCCcchHHHHHhh------c
Q 012296          207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETV------L  270 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~-------~G-d~Vlv~~~~y~~t~~~~~~~------l  270 (466)
                      +.++...+|.++|+++.+.  +.+.+++||++|+..++.....       +| .+||.....|++........      -
T Consensus        91 ~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~  170 (456)
T PRK07480         91 TTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMH  170 (456)
T ss_pred             cCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhh
Confidence            4678888999999998753  6788889999999998875422       23 46888888888732111000      0


Q ss_pred             ccCCc---eEEEeCCC---------------C--HHHHHHhhc---CCCceEEEEeCCCCCCccccc----HHHHHHHHH
Q 012296          271 PKMGI---TATVIDPA---------------D--MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCH  323 (466)
Q Consensus       271 ~~~Gi---~v~~vd~~---------------D--le~Le~ai~---~~~tklV~lesP~NPtG~v~d----l~~Ia~la~  323 (466)
                      ...+.   .+..++..               +  ++.+++.+.   ..++.+|++|......|.+.+    +++|.++|+
T Consensus       171 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~  250 (456)
T PRK07480        171 EQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICR  250 (456)
T ss_pred             cccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence            00110   11112210               1  255655452   124899999988876677665    899999999


Q ss_pred             hcCCEEEEeCCCCCC----C--cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHH-HH-HHhCC--CchH
Q 012296          324 KKGAIVCIDGTFATP----L--NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-LH-HVLGG--ALNP  393 (466)
Q Consensus       324 ~~gillIvDea~a~~----~--~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~-~~-~~~G~--~lsp  393 (466)
                      +||+++|+||++...    .  .......-.|+++  ++|.++++ -+..|.+++++++++.+.. .. ...+.  .-+|
T Consensus       251 ~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~gG-~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gnp  327 (456)
T PRK07480        251 KYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMT--IAKGLTSG-YIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHP  327 (456)
T ss_pred             HcCCEEEEechhhCCCcCcchhhhhhcCCCCCeee--eehhhccC-CccceEEEEcHHHHHHHhcCCCCcccCCCCCcCH
Confidence            999999999996421    1  1222233467776  68999874 1235777778888887631 11 01111  2357


Q ss_pred             HHHHHHHHhhHHHHH--HHHHH-HHHHHHHHHHHHc---CCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEec
Q 012296          394 NAAYLIIRGMKTLHL--RVQQQ-NSTALRMAKILEA---HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVL  463 (466)
Q Consensus       394 ~~a~l~l~~L~tl~~--R~~~~-~~na~~La~~L~~---~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~  463 (466)
                      ..+.+++..|+.+..  .+++. .+..+.+.+.|++   +|.|..                  .+|.|.|+++|+.
T Consensus       328 l~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~l~~~~~i~~------------------vrG~Glm~gie~~  385 (456)
T PRK07480        328 VAAAVALANLRILRDEGIVERVRDDTGPYLQKRLRELADHPLVGE------------------VRGVGLVGAIELV  385 (456)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhcCCCeee------------------EEeecceEEEEEe
Confidence            777666666665532  12333 2344555555543   333333                  3677777777774

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.30  E-value=5.4e-10  Score=117.90  Aligned_cols=236  Identities=14%  Similarity=0.116  Sum_probs=141.1

Q ss_pred             CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------CC-CEEEEcCCCCcchHHHHHhhcc-----
Q 012296          207 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETVLP-----  271 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g--~e~~l~~sSGs~Ai~~al~all~-------~G-d~Vlv~~~~y~~t~~~~~~~l~-----  271 (466)
                      +.++...+|.++|+++.+  .+.+.+++||++|+..++.....       +| .+|+.....|++..........     
T Consensus        80 ~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~  159 (422)
T PRK05630         80 LTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGM  159 (422)
T ss_pred             cCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccc
Confidence            456778889999999874  36788889999999988874331       22 5788888888873211111100     


Q ss_pred             --cCC---ceEEEeCC--------CC----HHHHHHhhcCCCceEEEEeCC-CCCCcccc----cHHHHHHHHHhcCCEE
Q 012296          272 --KMG---ITATVIDP--------AD----MEGLEAALNNNNVSLFFTESP-TNPFLRCV----DVKLVSDLCHKKGAIV  329 (466)
Q Consensus       272 --~~G---i~v~~vd~--------~D----le~Le~ai~~~~tklV~lesP-~NPtG~v~----dl~~Ia~la~~~gill  329 (466)
                        .++   -.+.+++.        .+    .+.+++.+.+ ++.+|++|.. ....|.+.    .+++|.++|++||+++
T Consensus       160 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~ll  238 (422)
T PRK05630        160 HSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLIDE-TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILL  238 (422)
T ss_pred             cccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHhh-ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEE
Confidence              000   01112211        11    2455555654 4899999984 65556544    2789999999999999


Q ss_pred             EEeCCCCCC-C---c--ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH----HHhC--CCchHHHHH
Q 012296          330 CIDGTFATP-L---N--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH----HVLG--GALNPNAAY  397 (466)
Q Consensus       330 IvDea~a~~-~---~--~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~----~~~G--~~lsp~~a~  397 (466)
                      |+||++... -   .  ......-.||+  ++.|.++|+ -..+|++++++++++.+....    ...+  ...+|..+.
T Consensus       239 I~DEv~tG~GrtG~~~a~~~~gv~PDi~--t~gK~l~gG-~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~a  315 (422)
T PRK05630        239 IADEIATGFGRTGELFATLAAGVTPDIM--CVGKALTGG-FMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACA  315 (422)
T ss_pred             EEecceeCCCcCchhhHHHhcCCCCCee--eeechhhcC-ccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHH
Confidence            999996321 0   0  11122336777  579999663 124688888999888764210    0112  124566666


Q ss_pred             HHHHhhHHHHH--HHHHHHHHHHHHHHHHHc---CCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          398 LIIRGMKTLHL--RVQQQNSTALRMAKILEA---HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       398 l~l~~L~tl~~--R~~~~~~na~~La~~L~~---~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      .++..++.+..  ..++..+..+++.+.|++   +|.|..                  .+|.|.|+++|+.+
T Consensus       316 aa~aaL~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~------------------vRg~Gl~~~ie~~~  369 (422)
T PRK05630        316 VAHASLEIIETGMWRKQVKRIEAELIAGLSPLAHLPGVAD------------------VRVLGAIGVVEMEQ  369 (422)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhcCCCeee------------------eeccccEEEEEECC
Confidence            66655655532  234444555555555543   333332                  35677777777753

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.30  E-value=6.1e-10  Score=117.72  Aligned_cols=217  Identities=12%  Similarity=0.130  Sum_probs=136.1

Q ss_pred             CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------C-CCEEEEcCCCCcch-HHHHH-------
Q 012296          206 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKT-RIFIE-------  267 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g--~e~~l~~sSGs~Ai~~al~all~-------~-Gd~Vlv~~~~y~~t-~~~~~-------  267 (466)
                      .+.++...+|.++|+++..  .+.+.+.+||++|+..++.....       + ..+|+.....|++. ...+.       
T Consensus        83 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~  162 (429)
T PRK06173         83 GFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTG  162 (429)
T ss_pred             ccCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchh
Confidence            3457778889999998874  36788889999999998875431       2 35788888888873 11110       


Q ss_pred             --hhcccCCceEEEeCC-----------CCHHHHHHhhc--CCCceEEEEeCC-CCCCccccc----HHHHHHHHHhcCC
Q 012296          268 --TVLPKMGITATVIDP-----------ADMEGLEAALN--NNNVSLFFTESP-TNPFLRCVD----VKLVSDLCHKKGA  327 (466)
Q Consensus       268 --~~l~~~Gi~v~~vd~-----------~Dle~Le~ai~--~~~tklV~lesP-~NPtG~v~d----l~~Ia~la~~~gi  327 (466)
                        ......--.+.+++.           .+++.|++.+.  ..++.+|++|.. ....|...+    +++|.++|++||+
T Consensus       163 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~  242 (429)
T PRK06173        163 MHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGV  242 (429)
T ss_pred             hhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCC
Confidence              000000001122221           13566777774  234899999985 665565543    7899999999999


Q ss_pred             EEEEeCCCCCCCc-------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH---HHhC--CCchHHH
Q 012296          328 IVCIDGTFATPLN-------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLG--GALNPNA  395 (466)
Q Consensus       328 llIvDea~a~~~~-------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~---~~~G--~~lsp~~  395 (466)
                      ++|+||++. ++.       ........||++  ++|.++|+ -+..+.+++++++++.+....   ...+  ...+|..
T Consensus       243 llI~DEv~t-G~GrtG~~~a~~~~gv~PDiv~--~gK~l~gG-~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~  318 (429)
T PRK06173        243 LLIFDEIAT-GFGRTGKLFALEHAGVVPDIMC--IGKALTGG-YLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLA  318 (429)
T ss_pred             eEEecchhc-CCCcCCcchHHHhcCCCCCEEE--eehhhhCC-ccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHH
Confidence            999999973 221       111223468887  89999653 234677888888888764210   1122  1246777


Q ss_pred             HHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc
Q 012296          396 AYLIIRGMKTLHL--RVQQQNSTALRMAKILEA  426 (466)
Q Consensus       396 a~l~l~~L~tl~~--R~~~~~~na~~La~~L~~  426 (466)
                      +..++..|+.+..  .+++..++.+.+.+.|++
T Consensus       319 ~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  351 (429)
T PRK06173        319 CAIAAESIRLLLESPWQQNIQRIEAQLKQELAP  351 (429)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            7666666665542  255566666677777763

>PRK06062 hypothetical protein; Provisional

Probab=99.30  E-value=5.7e-10  Score=118.68  Aligned_cols=200  Identities=13%  Similarity=0.110  Sum_probs=128.5

Q ss_pred             cCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhc----c-----
Q 012296          205 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL----P-----  271 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l----~-----  271 (466)
                      ..+.++...+|.++|+++...  +.+.+++||++|+..+++...  ....+||.....|++........-    .     
T Consensus        90 ~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~  169 (451)
T PRK06062         90 PAHANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDT  169 (451)
T ss_pred             CccCCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCC
Confidence            456678888999999998743  678888999999999887542  234678888888887422111110    0     


Q ss_pred             -cCCceEEEeC---------CCC-------HHHHHHhhcC---CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCC
Q 012296          272 -KMGITATVID---------PAD-------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGA  327 (466)
Q Consensus       272 -~~Gi~v~~vd---------~~D-------le~Le~ai~~---~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gi  327 (466)
                       ..|+.....+         ..|       ++.+++.++.   .++.+|++|......|.+.+    +++|.++|+++|+
T Consensus       170 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~  249 (451)
T PRK06062        170 GRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGI  249 (451)
T ss_pred             CCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCC
Confidence             0111111000         012       5677777752   34899999998877788877    9999999999999


Q ss_pred             EEEEeCCCCCC----Cc--ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCC--CchHHHHHHH
Q 012296          328 IVCIDGTFATP----LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG--ALNPNAAYLI  399 (466)
Q Consensus       328 llIvDea~a~~----~~--~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~--~lsp~~a~l~  399 (466)
                      ++|+||++...    ..  ........|+++  ++|.++++ -+..|.+++++++++.+.......+.  .-+|..+.++
T Consensus       250 lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t--~gK~lggG-~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa  326 (451)
T PRK06062        250 VLIADEVMAGFGRTGKWFAIEHFGVVPDLIT--FAKGVNSG-YVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAA  326 (451)
T ss_pred             EEEeeccccCCCcCcHHHHHHhcCCCCCeee--echhhhcC-CcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHH
Confidence            99999996532    11  122233467775  78999974 12356677788888876531111111  2257777666


Q ss_pred             HHhhHHHH
Q 012296          400 IRGMKTLH  407 (466)
Q Consensus       400 l~~L~tl~  407 (466)
                      +..|+.++
T Consensus       327 ~a~L~~l~  334 (451)
T PRK06062        327 VATINAME  334 (451)
T ss_pred             HHHHHHHH
Confidence            66666653

>PRK07481 hypothetical protein; Provisional

Probab=99.30  E-value=9.6e-10  Score=116.93  Aligned_cols=216  Identities=13%  Similarity=0.126  Sum_probs=130.5

Q ss_pred             CCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHHcc-------CC-CEEEEcCCCCcchHHHHHhhc-----
Q 012296          207 YGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETVL-----  270 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g---~e~~l~~sSGs~Ai~~al~all~-------~G-d~Vlv~~~~y~~t~~~~~~~l-----  270 (466)
                      +.++...+|.++|+++.+   .+.+.+++||++|+..++.....       +| .+||.....|++........-     
T Consensus        83 ~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~  162 (449)
T PRK07481         83 TTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVF  162 (449)
T ss_pred             cCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCccc
Confidence            467888899999999873   35678889999999998875431       23 578888888888321110100     


Q ss_pred             ----cc--CCceEEEeC------C--CCHHH--------HHHhhc---CCCceEEEEeCCCCCCccccc----HHHHHHH
Q 012296          271 ----PK--MGITATVID------P--ADMEG--------LEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDL  321 (466)
Q Consensus       271 ----~~--~Gi~v~~vd------~--~Dle~--------Le~ai~---~~~tklV~lesP~NPtG~v~d----l~~Ia~l  321 (466)
                          ..  .|+.....+      .  .|+++        +++.|.   ++++.+|++|......|.+.+    +++|.++
T Consensus       163 ~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~l  242 (449)
T PRK07481        163 RRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREV  242 (449)
T ss_pred             ccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHH
Confidence                00  122111000      0  13333        344442   235899999988766676654    8999999


Q ss_pred             HHhcCCEEEEeCCCCCC------CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH-----HHhCCC
Q 012296          322 CHKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLGGA  390 (466)
Q Consensus       322 a~~~gillIvDea~a~~------~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~-----~~~G~~  390 (466)
                      |++||+++|.||++...      +.......-.||++  ++|.++++- +..|.+++++++++.+....     ...+.+
T Consensus       243 c~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~-~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T  319 (449)
T PRK07481        243 CDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMC--LAKGITSGY-VPLGATMVNARIADAFEANADFGGAIMHGYT  319 (449)
T ss_pred             HHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEE--EeecccCCC-cCceEEEEcHHHHHHHhccCccccccccCCC
Confidence            99999999999995431      11222233468887  589998741 23577888888888765311     012222


Q ss_pred             --chHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH
Q 012296          391 --LNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILE  425 (466)
Q Consensus       391 --lsp~~a~l~l~~L~tl~~--R~~~~~~na~~La~~L~  425 (466)
                        -+|..+.+++..|+.+..  .+++..+.-++|.+.|+
T Consensus       320 ~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~  358 (449)
T PRK07481        320 YSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQ  358 (449)
T ss_pred             CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence              256666666655655432  23344444444555444

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.30  E-value=6.9e-10  Score=117.78  Aligned_cols=225  Identities=12%  Similarity=0.169  Sum_probs=137.7

Q ss_pred             CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------C-CCEEEEcCCCCcchHH-HH--------H
Q 012296          207 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRI-FI--------E  267 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g--~e~~l~~sSGs~Ai~~al~all~-------~-Gd~Vlv~~~~y~~t~~-~~--------~  267 (466)
                      +.++...+|.++|+++..  .+.+.+++||++|+..++.....       + ..+||.....|++... .+        +
T Consensus        86 ~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~  165 (442)
T PRK13360         86 MGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNR  165 (442)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhh
Confidence            357888889999999874  36788889999999998874331       1 2579988888888321 11        0


Q ss_pred             hhcccCCceEEEeCCC------------------CHHHHHHhhc---CCCceEEEEeCCCCCCccccc----HHHHHHHH
Q 012296          268 TVLPKMGITATVIDPA------------------DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLC  322 (466)
Q Consensus       268 ~~l~~~Gi~v~~vd~~------------------Dle~Le~ai~---~~~tklV~lesP~NPtG~v~d----l~~Ia~la  322 (466)
                      .........+..++..                  .++++++++.   ..++.+|++|......|.+.+    +++|.++|
T Consensus       166 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc  245 (442)
T PRK13360        166 KAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREIC  245 (442)
T ss_pred             hccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHH
Confidence            0001000111222211                  1457777774   234889999998887888887    99999999


Q ss_pred             HhcCCEEEEeCCCCC-C-----CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHH-------HHHhCC
Q 012296          323 HKKGAIVCIDGTFAT-P-----LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-------HHVLGG  389 (466)
Q Consensus       323 ~~~gillIvDea~a~-~-----~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~-------~~~~G~  389 (466)
                      +++|+++|+||++.. +     +.........|++  +++|.++++. ...|.+++++++++.+..-       ....-.
T Consensus       246 ~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv--t~gK~l~gG~-~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~  322 (442)
T PRK13360        246 DKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLL--TCAKGLTNGA-IPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTY  322 (442)
T ss_pred             HHcCCEEEEechhhCCCCCccchhhhhcCCCCcee--eeeeccccCc-cceEEEEEcHHHHHHhhcCCccccccccCCCC
Confidence            999999999999632 1     1112222346776  5799998642 2356677888888766421       011111


Q ss_pred             CchHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc---CCCeEEEe
Q 012296          390 ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA---HPKVKRVH  434 (466)
Q Consensus       390 ~lsp~~a~l~l~~L~tl~~--R~~~~~~na~~La~~L~~---~p~V~~V~  434 (466)
                      ..+|..+..++..|+.+..  .+++..++.+++.+.|++   +|.|..|+
T Consensus       323 ~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vr  372 (442)
T PRK13360        323 SGHPLACAAALATLDLYEREGLLTRAARLAPYWEDALHSLRDAPHVIDIR  372 (442)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcCCCeeeee
Confidence            2356666666656655432  234444555555555553   45444443

>PRK07036 hypothetical protein; Provisional

Probab=99.30  E-value=1.3e-09  Score=116.30  Aligned_cols=236  Identities=14%  Similarity=0.173  Sum_probs=143.9

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc-------C-CCEEEEcCCCCcchHHHHHhhccc----
Q 012296          207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVLPK----  272 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~-------~-Gd~Vlv~~~~y~~t~~~~~~~l~~----  272 (466)
                      ..++...+|.++|.++...  +.+.+++||++|+..++.....       + ..+|+.....|++........-..    
T Consensus        92 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~  171 (466)
T PRK07036         92 MTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADR  171 (466)
T ss_pred             cCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCccc
Confidence            4677788899999988743  5677889999999988874321       1 257888888888743221111000    


Q ss_pred             --CC---ceEEEeCCCC-----------------HHHHHHhhc---CCCceEEEEeCCCCCCccccc----HHHHHHHHH
Q 012296          273 --MG---ITATVIDPAD-----------------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCH  323 (466)
Q Consensus       273 --~G---i~v~~vd~~D-----------------le~Le~ai~---~~~tklV~lesP~NPtG~v~d----l~~Ia~la~  323 (466)
                        ++   ..+..++..+                 ++.+++.+.   ..++.+|++|......|.+.+    +++|.++|+
T Consensus       172 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~  251 (466)
T PRK07036        172 TEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICR  251 (466)
T ss_pred             ccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHH
Confidence              00   0112221110                 234555553   235899999998877787766    899999999


Q ss_pred             hcCCEEEEeCCCCCC-----Cc-cc-ccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHH---H--HHhCC--
Q 012296          324 KKGAIVCIDGTFATP-----LN-QK-ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL---H--HVLGG--  389 (466)
Q Consensus       324 ~~gillIvDea~a~~-----~~-~~-~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~---~--~~~G~--  389 (466)
                      +||+++|+||++...     +. .. .....+||++  ++|.++++ -+..|.+++++++++.+...   .  ...+.  
T Consensus       252 ~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt--~gK~l~gG-~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~  328 (466)
T PRK07036        252 RYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIIT--FAKGLTSG-YQPLGAVIISERLLDVISGPNAKGNVFTHGFTY  328 (466)
T ss_pred             HcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEE--EccccccC-ccccEEEEEcHHHHHHHhcccCcCcccccCCCC
Confidence            999999999996431     11 11 2233468876  68999874 12357777899998876531   0  11121  


Q ss_pred             CchHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc---CCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEec
Q 012296          390 ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA---HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVL  463 (466)
Q Consensus       390 ~lsp~~a~l~l~~L~tl~~--R~~~~~~na~~La~~L~~---~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~  463 (466)
                      .-+|..+.+++..|+.+..  .+++..+..++|.+.|++   +|.|..                  .+|.|.|++||+.
T Consensus       329 ~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~------------------vrG~Gl~~~ve~~  389 (466)
T PRK07036        329 SGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASLRELPLVGD------------------VRGDHLMACVECV  389 (466)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCEEE------------------EEeeceEEEEEEc
Confidence            2367777776666666532  234444455555555543   333333                  3677778887774

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.29  E-value=2.6e-10  Score=130.11  Aligned_cols=159  Identities=19%  Similarity=0.276  Sum_probs=122.0

Q ss_pred             HHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHH-ccCC--CEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHH
Q 012296          212 TVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL-VPAG--GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME  286 (466)
Q Consensus       212 ~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~al-l~~G--d~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle  286 (466)
                      ..+++..+++|.|.+  ++.++.+++++..++++++ +++|  |+|++++..|+.+...+...++..|++++.++..+.+
T Consensus       150 l~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~~  229 (993)
T PLN02414        150 LLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDFD  229 (993)
T ss_pred             HHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhhc
Confidence            456789999999984  6778888888888877766 4544  7899999999999888877788899999988754322


Q ss_pred             HHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCC--CCcccccccCCcEEEECCcccc-----
Q 012296          287 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT--PLNQKALSLGADLVLHSATKFI-----  359 (466)
Q Consensus       287 ~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~--~~~~~~l~~gaDivv~S~sK~l-----  359 (466)
                          ...+ .+..+++..|+ .+|.+.|+++|+++||++|+++++ .+...  .....+.++|+||++.+.+||.     
T Consensus       230 ----~~~~-~v~~vlvq~P~-~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~  302 (993)
T PLN02414        230 ----YSSG-DVCGVLVQYPA-TDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGY  302 (993)
T ss_pred             ----cccC-ceEEEEEecCC-CCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCC
Confidence                1223 25566666665 589999999999999999999999 44322  2223577899999999999998     


Q ss_pred             CccccceeEEEEeCHHHHHHH
Q 012296          360 GGHNDVLAGSISGSGKLVTQI  380 (466)
Q Consensus       360 gg~gdv~gG~ivg~~eli~~l  380 (466)
                      |||.   +|+++.++++...+
T Consensus       303 GGP~---aGflavr~~~~r~~  320 (993)
T PLN02414        303 GGPH---AAFLATSQEYKRLM  320 (993)
T ss_pred             CCCC---eeEEEECHHHHhhC
Confidence            5553   69999988775543

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.29  E-value=1.4e-09  Score=116.01  Aligned_cols=221  Identities=15%  Similarity=0.146  Sum_probs=133.4

Q ss_pred             CchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhc-----ccCCc---
Q 012296          208 GNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL-----PKMGI---  275 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l-----~~~Gi---  275 (466)
                      .++...+|.++|+++.+.  +.+.+++||++|+..++....  ....+||.....|++.........     ...+.   
T Consensus        94 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~  173 (457)
T PRK05639         94 HSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPL  173 (457)
T ss_pred             CCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCC
Confidence            357777899999988754  578888999999999887543  334578888888887332111110     00010   


Q ss_pred             --eEEEeCCC-------------CH--------HHHHHhh-----cCCCceEEEEeCCCCCCccccc----HHHHHHHHH
Q 012296          276 --TATVIDPA-------------DM--------EGLEAAL-----NNNNVSLFFTESPTNPFLRCVD----VKLVSDLCH  323 (466)
Q Consensus       276 --~v~~vd~~-------------Dl--------e~Le~ai-----~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~  323 (466)
                        .+.+++..             +.        +.+++.+     ...++.+|++|......|.+.+    +++|.++|+
T Consensus       174 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~  253 (457)
T PRK05639        174 MPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLD  253 (457)
T ss_pred             CCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHH
Confidence              12222211             12        2355543     1335899999988766676554    789999999


Q ss_pred             hcCCEEEEeCCCCCC----C--cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHH
Q 012296          324 KKGAIVCIDGTFATP----L--NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAY  397 (466)
Q Consensus       324 ~~gillIvDea~a~~----~--~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~  397 (466)
                      +||+++|+||++.+.    .  ........+|+++  ++|.+++.  ...|++++++++++.... ........+|..+.
T Consensus       254 ~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~gG--~pi~av~~~~~i~~~~~~-~~~~T~~g~p~~~a  328 (457)
T PRK05639        254 EHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLII--FGKGVASG--MGLSGVIGRKELMDLTSG-SALLTPAANPVISA  328 (457)
T ss_pred             HcCCEEEEechhhccCcCchHHHHHhcCCCCCEEE--echhhcCC--CcceeEEehHHHHhhcCC-CcccCCCcCHHHHH
Confidence            999999999996531    1  1122233478888  79999864  245888889988873211 11111234666666


Q ss_pred             HHHHhhHHHHH--HHHHHHHHHHHHHHHHHc----CCCeEEE
Q 012296          398 LIIRGMKTLHL--RVQQQNSTALRMAKILEA----HPKVKRV  433 (466)
Q Consensus       398 l~l~~L~tl~~--R~~~~~~na~~La~~L~~----~p~V~~V  433 (466)
                      +++..|+.+..  .+++..+..++|.+.|++    +|.+..|
T Consensus       329 aa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~V  370 (457)
T PRK05639        329 AAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIGDV  370 (457)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEee
Confidence            65555655432  233444445555555543    5545444

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.28  E-value=5e-10  Score=118.50  Aligned_cols=216  Identities=12%  Similarity=0.160  Sum_probs=137.9

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHH-HHh-hcc---------
Q 012296          207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIF-IET-VLP---------  271 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~-~~~-~l~---------  271 (466)
                      ..++...+|.++|.++.+.  +.+.+++||++|+..++....  ....+|+.....|++.... +.. .+.         
T Consensus        90 ~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~  169 (433)
T PRK00615         90 LTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTH  169 (433)
T ss_pred             CCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCC
Confidence            4567778888888888754  478888999999999887543  2235788888888873211 100 000         


Q ss_pred             cC-----CceEEEeCCCCHHHHHHhhcC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC-C
Q 012296          272 KM-----GITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-L  339 (466)
Q Consensus       272 ~~-----Gi~v~~vd~~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~-~  339 (466)
                      ..     .-....++..|++++++.+..  .++.+|++|......|.+.+    +++|.++|++||+++|+||++.+. .
T Consensus       170 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~  249 (433)
T PRK00615        170 LVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRV  249 (433)
T ss_pred             CCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence            00     001122344578888888852  24789999988877787776    569999999999999999997421 1


Q ss_pred             c----ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH-HhCCC--chHHHHHHHHHhhHHHHH--HH
Q 012296          340 N----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGGA--LNPNAAYLIIRGMKTLHL--RV  410 (466)
Q Consensus       340 ~----~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~-~~G~~--lsp~~a~l~l~~L~tl~~--R~  410 (466)
                      .    ........|+++  ++|.+++.  ..+|++++++++++.+..... ..+.+  .+|..+.+++..|+.++.  .+
T Consensus       250 G~~ga~~~~gv~PDi~~--~gK~lggG--~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~  325 (433)
T PRK00615        250 AQGGAAAIYHVKPDITV--YGKILGGG--LPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFY  325 (433)
T ss_pred             cHhHHHHhcCCCCCeEE--EcccccCC--cceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHH
Confidence            1    111223468876  79999864  357899999999888753211 12222  366666666666665531  24


Q ss_pred             HHHHHHHHHHHHHHHc
Q 012296          411 QQQNSTALRMAKILEA  426 (466)
Q Consensus       411 ~~~~~na~~La~~L~~  426 (466)
                      ++..++.+++.+.|++
T Consensus       326 ~~~~~~g~~l~~~l~~  341 (433)
T PRK00615        326 TQLSTLEQNFLSPIEE  341 (433)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4445555555444443

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.28  E-value=8.3e-10  Score=113.11  Aligned_cols=195  Identities=17%  Similarity=0.205  Sum_probs=133.1

Q ss_pred             CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC----CCHHHHHHhhcCC-----
Q 012296          226 ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----ADMEGLEAALNNN-----  295 (466)
Q Consensus       226 e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----~Dle~Le~ai~~~-----  295 (466)
                      +.-+++++|. .++..+++.++..||+|++...+|.+..    ..++..|+.+..|+.    .++|.|++.+...     
T Consensus       124 ~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL----~s~~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~  199 (472)
T KOG0634|consen  124 NWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSAL----QSMEALGVKIIPVKMDQDGIDPESLEEILSNWKPGSY  199 (472)
T ss_pred             CceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHH----HhccccCceEEeccccCCCCCHHHHHHHHhcCCcccc
Confidence            3467777777 9999999999999999999999999865    345667887777753    3789998887532     


Q ss_pred             ---CceEEEE-eCCCCCCcccccH---HHHHHHHHhcCCEEEEeCCCCCCCc-------------c-----------ccc
Q 012296          296 ---NVSLFFT-ESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLN-------------Q-----------KAL  344 (466)
Q Consensus       296 ---~tklV~l-esP~NPtG~v~dl---~~Ia~la~~~gillIvDea~a~~~~-------------~-----------~~l  344 (466)
                         +++++|. .+-+||||....+   ++|.++|++|++++|.|+.|.-...             +           ..+
T Consensus       200 k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sfl  279 (472)
T KOG0634|consen  200 KKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFL  279 (472)
T ss_pred             cCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcc
Confidence               2455554 3345999999876   5799999999999999998532100             0           011


Q ss_pred             ---ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCC---CchHH------HHHHHHHhhHHHHHHHHH
Q 012296          345 ---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG---ALNPN------AAYLIIRGMKTLHLRVQQ  412 (466)
Q Consensus       345 ---~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~---~lsp~------~a~l~l~~L~tl~~R~~~  412 (466)
                         ..|..|-..||||.++++.  +.||+.+++.+++++.......-.   +.+..      ..|....-++++......
T Consensus       280 slDtdGrVIr~dSFSKiiaPGl--RlG~it~~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~  357 (472)
T KOG0634|consen  280 SLDTDGRVIRNDSFSKIIAPGL--RLGWITGNSLFLKRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSS  357 (472)
T ss_pred             cccccccEEeccchhhhhcCcc--eeEEeecCHHHHHHHhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               1244578899999998764  689999999888876554332211   12222      233332234555555555


Q ss_pred             HHHHHHHHHHHHHc
Q 012296          413 QNSTALRMAKILEA  426 (466)
Q Consensus       413 ~~~na~~La~~L~~  426 (466)
                      +..++..+...|.+
T Consensus       358 Yt~Rrn~~l~Al~k  371 (472)
T KOG0634|consen  358 YTERRNALLSALDK  371 (472)
T ss_pred             HHHHHHHHHHHHHH
Confidence            56666666666665

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.26  E-value=9.3e-10  Score=115.73  Aligned_cols=166  Identities=13%  Similarity=0.125  Sum_probs=109.8

Q ss_pred             CchhHHHHHHHHHhhh--C--CC-cEEEe-CCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhh------cccC
Q 012296          208 GNPTTVVVEEKMSALE--G--AE-STVIM-ASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV------LPKM  273 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~--g--~e-~~l~~-sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~------l~~~  273 (466)
                      .++...+|.++|+++.  +  .. ...++ +||++|+..+++...  ....+||.....|++........      -..+
T Consensus        76 ~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~  155 (412)
T TIGR02407        76 ATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGA  155 (412)
T ss_pred             CcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCC
Confidence            4677778888888864  2  22 34554 799999999887543  23467888888888843221111      0111


Q ss_pred             C---ceEEEeCC--------CCHHHHHHhhcC-----CCceEEEEeCCCCCCcccc-c---HHHHHHHHHhcCCEEEEeC
Q 012296          274 G---ITATVIDP--------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCV-D---VKLVSDLCHKKGAIVCIDG  333 (466)
Q Consensus       274 G---i~v~~vd~--------~Dle~Le~ai~~-----~~tklV~lesP~NPtG~v~-d---l~~Ia~la~~~gillIvDe  333 (466)
                      +   ..+..++.        .+++.+++.+++     .++.+|++|...+..|.+. +   +++|.++|+++|+++|+||
T Consensus       156 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DE  235 (412)
T TIGR02407       156 GVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDD  235 (412)
T ss_pred             CCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence            1   12233332        236778888852     2378999999988888754 2   7899999999999999999


Q ss_pred             CCCCC------CcccccccCCcEEEECCccccCccccceeEEEEeCHHH
Q 012296          334 TFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL  376 (466)
Q Consensus       334 a~a~~------~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~el  376 (466)
                      ++.+.      +.........|+++  ++|++++.| ...|++++++++
T Consensus       236 V~tG~GRtG~~~a~~~~~v~PDi~~--~~K~lg~~G-~pigav~~~~~~  281 (412)
T TIGR02407       236 IQAGCGRTGTFFSFEPAGIEPDIVC--LSKSISGYG-LPLALTLIKPEL  281 (412)
T ss_pred             hhhCCCccchhHHhcccCCCCCEEE--echhccCCc-cceeEEEEchhh
Confidence            97521      11222334578776  679998744 457888888775

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.26  E-value=1.3e-09  Score=116.53  Aligned_cols=197  Identities=13%  Similarity=0.126  Sum_probs=122.0

Q ss_pred             CCchhHHHHHHHHHhhhCC-------CcEEEeCCHHHHHHHHHHHHcc-------C-CCEEEEcCCCCcchHHHHHhhc-
Q 012296          207 YGNPTTVVVEEKMSALEGA-------ESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVL-  270 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~-------e~~l~~sSGs~Ai~~al~all~-------~-Gd~Vlv~~~~y~~t~~~~~~~l-  270 (466)
                      +.++...+|.++|+++...       +.+.+.+||++|+..++.....       + ..+||.....|++........- 
T Consensus       104 ~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~  183 (472)
T PRK08742        104 FTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGD  183 (472)
T ss_pred             cCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccC
Confidence            4577788899999987642       4778889999999998875431       2 2578888888888421111100 


Q ss_pred             --------ccCCceEEEeCCC-----------------CHHHHHHhhc--CCCceEEEEeC-CCCCCccccc----HHHH
Q 012296          271 --------PKMGITATVIDPA-----------------DMEGLEAALN--NNNVSLFFTES-PTNPFLRCVD----VKLV  318 (466)
Q Consensus       271 --------~~~Gi~v~~vd~~-----------------Dle~Le~ai~--~~~tklV~les-P~NPtG~v~d----l~~I  318 (466)
                              ...-..+.+++..                 +++.+++.++  ..++.+|++|. ..+..|.+.+    +++|
T Consensus       184 ~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~l  263 (472)
T PRK08742        184 IPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRA  263 (472)
T ss_pred             CcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHH
Confidence                    0000011222211                 2466677764  23489999998 4655566543    7899


Q ss_pred             HHHHHhcCCEEEEeCCCCCC----Cc--ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH----HHhC
Q 012296          319 SDLCHKKGAIVCIDGTFATP----LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH----HVLG  388 (466)
Q Consensus       319 a~la~~~gillIvDea~a~~----~~--~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~----~~~G  388 (466)
                      .++|+++|+++|.||++.+.    ..  ......-.||++  +.|.++++ -+..|.+++++++++.+....    ...+
T Consensus       264 r~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~--~gKgl~gG-~~Plaav~~~~ei~~~~~~~~~~~~~~h~  340 (472)
T PRK08742        264 RELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLC--LSKGLTGG-FLPLSAVLATQQLYDAFLDDSRERAFLHS  340 (472)
T ss_pred             HHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEE--EcccccCC-CCCcceeeccHHHHHHhhccCccCccCcC
Confidence            99999999999999995421    11  222233478888  58999875 123677788898887664210    0112


Q ss_pred             CC--chHHHHHHHHHhhHHH
Q 012296          389 GA--LNPNAAYLIIRGMKTL  406 (466)
Q Consensus       389 ~~--lsp~~a~l~l~~L~tl  406 (466)
                      .+  -+|..+.+++..|+.+
T Consensus       341 ~T~~gnpl~~Aaa~a~L~~i  360 (472)
T PRK08742        341 HSYTGNPLACAAALATLDIF  360 (472)
T ss_pred             CCCCccHHHHHHHHHHHHHH
Confidence            22  3566666655555544

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.24  E-value=1.1e-09  Score=116.67  Aligned_cols=236  Identities=16%  Similarity=0.158  Sum_probs=144.0

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc-------C-CCEEEEcCCCCcchHHHHHhhcc-----
Q 012296          207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVLP-----  271 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~-------~-Gd~Vlv~~~~y~~t~~~~~~~l~-----  271 (466)
                      +.++...+|.++|+++...  +.+.+++||++|+..++.....       + ..+||.....|++.......+-.     
T Consensus        96 ~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~  175 (460)
T PRK06916         96 LANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFH  175 (460)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccc
Confidence            3567788899999998753  5788889999999998875432       3 35788888888884321111100     


Q ss_pred             -cCC---ceEEEeCC-----------------CCHHHHHHhhc--CCCceEEEEeC-CCCCCccccc----HHHHHHHHH
Q 012296          272 -KMG---ITATVIDP-----------------ADMEGLEAALN--NNNVSLFFTES-PTNPFLRCVD----VKLVSDLCH  323 (466)
Q Consensus       272 -~~G---i~v~~vd~-----------------~Dle~Le~ai~--~~~tklV~les-P~NPtG~v~d----l~~Ia~la~  323 (466)
                       .++   ..+..++.                 .+++++++.++  ..++.+|++|. +....|.+.+    +++|.++|+
T Consensus       176 ~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~  255 (460)
T PRK06916        176 QVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCT  255 (460)
T ss_pred             cccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHH
Confidence             000   01111110                 12456677775  23489999998 5655565542    789999999


Q ss_pred             hcCCEEEEeCCCCCC----C--cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHH----H-HHhCC--C
Q 012296          324 KKGAIVCIDGTFATP----L--NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL----H-HVLGG--A  390 (466)
Q Consensus       324 ~~gillIvDea~a~~----~--~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~----~-~~~G~--~  390 (466)
                      ++|+++|+||++...    .  .........|+++  +.|.++++ -+..|++++++++++.+..-    . ...+.  .
T Consensus       256 ~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~--~gK~l~gG-~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~  332 (460)
T PRK06916        256 KYNVLFITDEVATGFGRTGKMFACEHENVTPDIMT--AGKGLTGG-YLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYT  332 (460)
T ss_pred             HcCCEEEeechhhCCCcCchhhHHHhcCCCCCeee--eehhhhcC-ccccceeeecHHHHHHhhccccccCccccCCCCC
Confidence            999999999995421    1  1122233468886  68999864 23468888899888766421    0 01121  1


Q ss_pred             chHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHcC---CCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEec
Q 012296          391 LNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAH---PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVL  463 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~--R~~~~~~na~~La~~L~~~---p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~  463 (466)
                      .+|..+.+++..|+.+..  .+++..+..+++.+.|++.   |.|..                  .+|.|.|+++++.
T Consensus       333 gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~------------------vrG~Glm~giel~  392 (460)
T PRK06916        333 GNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFALKHVGD------------------IRQLGLMVGIELV  392 (460)
T ss_pred             CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEE------------------eecCCceeeEEee
Confidence            256666666666655432  3444555555666666543   32322                  3677777777774

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.24  E-value=2.3e-09  Score=114.46  Aligned_cols=233  Identities=13%  Similarity=0.103  Sum_probs=137.5

Q ss_pred             CCCchhHHHHHHHHHhhhCC-----CcEEEe-CCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhc----c--
Q 012296          206 RYGNPTTVVVEEKMSALEGA-----ESTVIM-ASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL----P--  271 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g~-----e~~l~~-sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l----~--  271 (466)
                      .+.++...+|.++|.++...     +..+++ +||++|+..+++...  ....+||.....|++........-    .  
T Consensus       102 ~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~  181 (464)
T PRK06938        102 DLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKK  181 (464)
T ss_pred             ccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccc
Confidence            35678888888888887643     235565 599999999887542  234678888888887432211110    0  


Q ss_pred             cC-C--ceEEEeCCC-----------------CHHHHHHhhcC-----CCceEEEEeCCCCCCccccc----HHHHHHHH
Q 012296          272 KM-G--ITATVIDPA-----------------DMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDLC  322 (466)
Q Consensus       272 ~~-G--i~v~~vd~~-----------------Dle~Le~ai~~-----~~tklV~lesP~NPtG~v~d----l~~Ia~la  322 (466)
                      .+ +  -.+.+++..                 +++.+++.+++     .++.+|++|....-.|.+.+    +++|.++|
T Consensus       182 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc  261 (464)
T PRK06938        182 PLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRIT  261 (464)
T ss_pred             cCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHH
Confidence            00 0  012222211                 25677777753     14899999987765666553    78999999


Q ss_pred             HhcCCEEEEeCCCCCC------CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCC--CchHH
Q 012296          323 HKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG--ALNPN  394 (466)
Q Consensus       323 ~~~gillIvDea~a~~------~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~--~lsp~  394 (466)
                      +++|+++|.||++.+.      +.......-+||++  ++|.+++.  ...|.+++++++ +.+...  ..+.  .-+|.
T Consensus       262 ~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~--~gKglggG--~PlsAv~~~~~~-~~~~~~--~~~~T~~gnpl  334 (464)
T PRK06938        262 EEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVV--LSKAIGGS--LPLAVVVYREWL-DTWQPG--AHAGTFRGNQM  334 (464)
T ss_pred             HHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEE--eeccccCC--CceEEEeehhHh-hccCCC--CCCCCCCcCHH
Confidence            9999999999995432      11222333468888  58999864  456777777764 433211  1122  23566


Q ss_pred             HHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH----cCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEec
Q 012296          395 AAYLIIRGMKTLHL--RVQQQNSTALRMAKILE----AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVL  463 (466)
Q Consensus       395 ~a~l~l~~L~tl~~--R~~~~~~na~~La~~L~----~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~  463 (466)
                      .+.+++..|+.+..  -+++..+..++|.+.|+    ++|.|..|                  +|.|.|+++|+.
T Consensus       335 a~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~V------------------rG~Glm~gie~~  391 (464)
T PRK06938        335 AMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGDV------------------RGRGLMLGVEIV  391 (464)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeee------------------eccceEEEEEec
Confidence            66666666655432  12233333334444443    35555444                  566777777764

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.24  E-value=1.2e-09  Score=115.32  Aligned_cols=167  Identities=15%  Similarity=0.131  Sum_probs=109.2

Q ss_pred             CCchhHHHHHHHHHhhhC----CC-cEEEe-CCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHH-HHHhh-----ccc
Q 012296          207 YGNPTTVVVEEKMSALEG----AE-STVIM-ASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRI-FIETV-----LPK  272 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g----~e-~~l~~-sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~-~~~~~-----l~~  272 (466)
                      +.++...+|.++|+++..    .+ ...++ +||++|+..++....  ....+||.....|++... .+...     -..
T Consensus        79 ~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~  158 (425)
T PRK09264         79 MHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQG  158 (425)
T ss_pred             cCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccC
Confidence            356777888888888642    23 34454 699999999887542  234578888888887422 12110     001


Q ss_pred             CCc---eEEEeCC--------CCHHHHHHhhcC-----CCceEEEEeCCCCCCcccc----cHHHHHHHHHhcCCEEEEe
Q 012296          273 MGI---TATVIDP--------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCID  332 (466)
Q Consensus       273 ~Gi---~v~~vd~--------~Dle~Le~ai~~-----~~tklV~lesP~NPtG~v~----dl~~Ia~la~~~gillIvD  332 (466)
                      .+.   .+..++.        .|++++++.++.     .++.+|++|......|.+.    .+++|.++|++||+++|+|
T Consensus       159 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~D  238 (425)
T PRK09264        159 AGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVD  238 (425)
T ss_pred             CCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEe
Confidence            111   2333332        367788888853     2378999999887777654    4899999999999999999


Q ss_pred             CCCCCC------CcccccccCCcEEEECCccccCccccceeEEEEeCHHH
Q 012296          333 GTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL  376 (466)
Q Consensus       333 ea~a~~------~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~el  376 (466)
                      |++...      +.........|+++  ++|.+++.| ...|++++++++
T Consensus       239 EV~tG~GrtG~~~~~~~~~v~PDi~t--~~K~l~~~G-~pigav~~~~~i  285 (425)
T PRK09264        239 DIQAGCGRTGTFFSFERAGITPDIVT--LSKSISGYG-LPMALVLIKPEL  285 (425)
T ss_pred             chhhCCccccHHHHHhhcCCCCCEEE--eccccCCCc-cceEEEEEchhh
Confidence            997531      11122234567765  579998755 456888888776

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.23  E-value=1.1e-09  Score=112.33  Aligned_cols=162  Identities=24%  Similarity=0.381  Sum_probs=128.5

Q ss_pred             HHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc---cCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHH
Q 012296          214 VVEEKMSALEGAE--STVIMASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (466)
Q Consensus       214 ~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all---~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~L  288 (466)
                      +++..+++|.|.+  ++-++-.|+++-.+++++..   .+.++++++..+|+.+...++..++..|+++..++..|++++
T Consensus       124 efQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~l  203 (450)
T COG0403         124 EFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDADDLDDL  203 (450)
T ss_pred             HHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccchhhhh
Confidence            4588899999974  66677788866666665542   235899999999999999999889999999999998899999


Q ss_pred             HHhhcCCCceEEEEeCCCCCCc-ccccHHHHHHHHHhcCCEEEEeCC-CCCCCcccccccCCcEEEECCccc-----cCc
Q 012296          289 EAALNNNNVSLFFTESPTNPFL-RCVDVKLVSDLCHKKGAIVCIDGT-FATPLNQKALSLGADLVLHSATKF-----IGG  361 (466)
Q Consensus       289 e~ai~~~~tklV~lesP~NPtG-~v~dl~~Ia~la~~~gillIvDea-~a~~~~~~~l~~gaDivv~S~sK~-----lgg  361 (466)
                      +++ ++..+..++++.|+ -.| ...|+++|.+.+|++|+++++=.- .+-.+...|.++|+||++.+.+.+     |||
T Consensus       204 ~~~-~~~~~~gv~vQyP~-~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGG  281 (450)
T COG0403         204 ESA-DDGDVFGVLVQYPN-TFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGG  281 (450)
T ss_pred             hhc-cccCeEEEEEecCC-CCCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCC
Confidence            998 54358999999998 567 667899999999999998877432 233456778899999999998765     666


Q ss_pred             cccceeEEEEeCHHHHHHH
Q 012296          362 HNDVLAGSISGSGKLVTQI  380 (466)
Q Consensus       362 ~gdv~gG~ivg~~eli~~l  380 (466)
                      |.   +|++..++++..++
T Consensus       282 Ph---ag~fA~~~~~~R~m  297 (450)
T COG0403         282 PH---AGYFAVKDEFKRQM  297 (450)
T ss_pred             cc---eeeeeEhHhHhhcC
Confidence            64   78888877765443

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.23  E-value=1.7e-09  Score=115.07  Aligned_cols=196  Identities=14%  Similarity=0.132  Sum_probs=119.3

Q ss_pred             CCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhcc-----c--CC
Q 012296          207 YGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP-----K--MG  274 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l~-----~--~G  274 (466)
                      +.++...+|.++|+++...   +.+.+++||++|+..++....  ....+||.....|++........-.     .  ++
T Consensus        94 ~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~  173 (451)
T PRK06918         94 MMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFG  173 (451)
T ss_pred             cccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCC
Confidence            4567888899999998753   467888999999999887442  2345788888888884322211100     0  00


Q ss_pred             ---ceEEEeCCCC-----------------HHHHHHhh----cCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcC
Q 012296          275 ---ITATVIDPAD-----------------MEGLEAAL----NNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKG  326 (466)
Q Consensus       275 ---i~v~~vd~~D-----------------le~Le~ai----~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~g  326 (466)
                         -.+..++..+                 ++.+++.+    ..+++.+|++|......|.+.+    +++|.++|++||
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~g  253 (451)
T PRK06918        174 PFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHG  253 (451)
T ss_pred             CCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcC
Confidence               0111121100                 12344333    2335889999877655565443    789999999999


Q ss_pred             CEEEEeCCCCCCCc----ccccccC--CcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 012296          327 AIVCIDGTFATPLN----QKALSLG--ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII  400 (466)
Q Consensus       327 illIvDea~a~~~~----~~~l~~g--aDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l  400 (466)
                      +++|.||++.....    .....++  .|++  +++|.+++ | ...|++++++++++.+...........++..+.+++
T Consensus       254 illI~DEV~tg~gr~g~~~a~~~~~v~pDi~--t~sK~l~~-G-~pig~v~~~~~i~~~~~~~~~~~T~~g~~l~~aaa~  329 (451)
T PRK06918        254 ILFVADEIQTGFARTGKYFAIEHFDVVPDLI--TVSKSLGA-G-VPISGVIGRKEIMDESAPGELGGTYAGSPLGCAAAL  329 (451)
T ss_pred             CEEEEeccccCcCccCceehhHhcCCCCCEE--eeehhhcC-C-CccEEEEEcHHHHhccCCCCcCcCCCcCHHHHHHHH
Confidence            99999999754211    1111223  5744  78999995 4 467889999998887653222111233555555544


Q ss_pred             HhhHHH
Q 012296          401 RGMKTL  406 (466)
Q Consensus       401 ~~L~tl  406 (466)
                      ..++.+
T Consensus       330 a~l~~i  335 (451)
T PRK06918        330 AVLDII  335 (451)
T ss_pred             HHHHHH
Confidence            444433

>PRK06149 hypothetical protein; Provisional

Probab=99.23  E-value=2.9e-09  Score=123.12  Aligned_cols=199  Identities=12%  Similarity=0.122  Sum_probs=125.9

Q ss_pred             cCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchH-HHHHh--hc-------
Q 012296          205 GRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTR-IFIET--VL-------  270 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g--~e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~-~~~~~--~l-------  270 (466)
                      +++.++...+|.++|+++..  .+.+++++||++|+..+++...  ....+||..+..|++.. ....-  ..       
T Consensus       619 ~~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~  698 (972)
T PRK06149        619 SRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQAL  698 (972)
T ss_pred             ccccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCcccccccc
Confidence            45667888899999999873  4788899999999999987321  23356888887787632 11100  00       


Q ss_pred             cc-C-CceEEEe--------CCCC-----HHHHHHhhc-----CCCceEEEEeCCCCCCccccc----HHHHHHHHHhcC
Q 012296          271 PK-M-GITATVI--------DPAD-----MEGLEAALN-----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKG  326 (466)
Q Consensus       271 ~~-~-Gi~v~~v--------d~~D-----le~Le~ai~-----~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~g  326 (466)
                      .. . ++.....        ...+     .+++++.++     ..++.+|++|......|.+.+    +++|.++|++||
T Consensus       699 ~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g  778 (972)
T PRK06149        699 ETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARG  778 (972)
T ss_pred             CCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcC
Confidence            00 0 1111100        0011     233333332     234889999988777787777    999999999999


Q ss_pred             CEEEEeCCCCCC-Cc------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhC-CCchHHHHHH
Q 012296          327 AIVCIDGTFATP-LN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG-GALNPNAAYL  398 (466)
Q Consensus       327 illIvDea~a~~-~~------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G-~~lsp~~a~l  398 (466)
                      +++|+||++.+. -.      ..-.....||++  ++|.++++  ...|++++++++++.+......++ ...+|..+.+
T Consensus       779 ~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt--~gK~lg~G--~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aa  854 (972)
T PRK06149        779 GVCIADEVQVGYGRLGHYFWGFEQQGVVPDIIT--MAKGMGNG--HPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRI  854 (972)
T ss_pred             CEEEEEeehhcCCccCccchhhhhcCCCCCEEE--ecccccCC--eeeEEEEEcHHHHhhhccCCcccCCCCCCHHHHHH
Confidence            999999996321 11      111223468874  78999864  357888999999887753111111 2346777777


Q ss_pred             HHHhhHHHH
Q 012296          399 IIRGMKTLH  407 (466)
Q Consensus       399 ~l~~L~tl~  407 (466)
                      ++..|+.++
T Consensus       855 ala~L~~i~  863 (972)
T PRK06149        855 GMAVLDVLR  863 (972)
T ss_pred             HHHHHHHHH
Confidence            766666654

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.22  E-value=2.5e-09  Score=114.25  Aligned_cols=237  Identities=15%  Similarity=0.188  Sum_probs=141.8

Q ss_pred             CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------C-CCEEEEcCCCCcchHHHHHhhcc----
Q 012296          206 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVLP----  271 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g--~e~~l~~sSGs~Ai~~al~all~-------~-Gd~Vlv~~~~y~~t~~~~~~~l~----  271 (466)
                      .+.++...+|.++|+++..  .+.+.+++||++|+..++.....       + ..+||.....|++........-.    
T Consensus        86 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~  165 (466)
T PRK07030         86 GFSHEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALF  165 (466)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccc
Confidence            3457778889999998864  36788889999999998875421       2 35788888888873211111000    


Q ss_pred             --cCC---ceEEEeCCC-----------------CHHHHHHhhcC--CCceEEEEeC-CCCCCccccc----HHHHHHHH
Q 012296          272 --KMG---ITATVIDPA-----------------DMEGLEAALNN--NNVSLFFTES-PTNPFLRCVD----VKLVSDLC  322 (466)
Q Consensus       272 --~~G---i~v~~vd~~-----------------Dle~Le~ai~~--~~tklV~les-P~NPtG~v~d----l~~Ia~la  322 (466)
                        .++   -.+..++..                 +++.+++.++.  .++.+|++|. .....|.+.+    +++|.++|
T Consensus       166 ~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc  245 (466)
T PRK07030        166 TETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREAC  245 (466)
T ss_pred             cccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHH
Confidence              000   011112111                 24566777742  3489999998 4555565543    78999999


Q ss_pred             HhcCCEEEEeCCCCCC----C--cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHH-----HHHhCC--
Q 012296          323 HKKGAIVCIDGTFATP----L--NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-----HHVLGG--  389 (466)
Q Consensus       323 ~~~gillIvDea~a~~----~--~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~-----~~~~G~--  389 (466)
                      +++|+++|+||++.+.    .  .......-.|+++  +.|.++++ -...|.+++++++++.+..-     ....+.  
T Consensus       246 ~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG-~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~  322 (466)
T PRK07030        246 DRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLC--LSKALTGG-YLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSY  322 (466)
T ss_pred             HHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEe--eehhccCC-cccceEEEecHHHHHHHhcccccccccccCCCC
Confidence            9999999999995421    1  1222333478888  58999874 22468888899998876421     001122  


Q ss_pred             CchHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc---CCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEec
Q 012296          390 ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA---HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVL  463 (466)
Q Consensus       390 ~lsp~~a~l~l~~L~tl~~--R~~~~~~na~~La~~L~~---~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~  463 (466)
                      .-+|..+.+++..|+.+..  .+++..+.-+++.+.|++   +|.|..|                  +|.|.|++||+.
T Consensus       323 ~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~v------------------rG~Gl~~gie~~  383 (466)
T PRK07030        323 TGNPLACAAALATLDIFEQDNVIENNRALARRMAEATAHLADHPHVAEV------------------RQTGMILAIEMV  383 (466)
T ss_pred             CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCEEEe------------------EeceeEEEEEec
Confidence            2356766666666665532  123333334444444443   3433333                  566677777663

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.22  E-value=2.1e-09  Score=112.61  Aligned_cols=237  Identities=17%  Similarity=0.218  Sum_probs=147.9

Q ss_pred             cCCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHHc-------cCC-CEEEEcCCCCcch-H---------
Q 012296          205 GRYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV-------PAG-GHIVTTTDCYRKT-R---------  263 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g---~e~~l~~sSGs~Ai~~al~all-------~~G-d~Vlv~~~~y~~t-~---------  263 (466)
                      +-...| ..+|.++|+++..   .+.+++..||++|+..++...+       +|. .++|.-...|++. .         
T Consensus        83 ~~t~~P-a~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~  161 (449)
T COG0161          83 GFTHEP-AIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPV  161 (449)
T ss_pred             ccCCch-HHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCch
Confidence            334567 8899999999987   3678888899999988887443       222 3488888888772 1         


Q ss_pred             HHHHhhcccCCceEEEeCC-----------------CCHHHHHHhhcC---CCceEEEEeCCCCC-Cccccc----HHHH
Q 012296          264 IFIETVLPKMGITATVIDP-----------------ADMEGLEAALNN---NNVSLFFTESPTNP-FLRCVD----VKLV  318 (466)
Q Consensus       264 ~~~~~~l~~~Gi~v~~vd~-----------------~Dle~Le~ai~~---~~tklV~lesP~NP-tG~v~d----l~~I  318 (466)
                      ...+......-..+..++.                 ...++|++.|..   +++.++++|....- .|.+.+    ++++
T Consensus       162 ~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~v  241 (449)
T COG0161         162 ALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRV  241 (449)
T ss_pred             hhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHH
Confidence            1110111111011111110                 114567777654   45899999988776 666654    8999


Q ss_pred             HHHHHhcCCEEEEeCCCCC----C--CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHH-HHHh--C-
Q 012296          319 SDLCHKKGAIVCIDGTFAT----P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-HHVL--G-  388 (466)
Q Consensus       319 a~la~~~gillIvDea~a~----~--~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~-~~~~--G-  388 (466)
                      .++|++||+++|.||+..+    +  +...-...-.||++  ++|.+.++- +..|.++.++++.+.+..- ...+  | 
T Consensus       242 r~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~--~aKGLT~GY-~Pl~a~l~~~~I~~~~~~~~~~~f~HG~  318 (449)
T COG0161         242 REICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILC--LAKGLTGGY-LPLSAVLTSDRIYEAFSDGDAGAFMHGH  318 (449)
T ss_pred             HHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeee--ecccccccc-hhhHhHhhhHHHHHHHhcccCCeeccCC
Confidence            9999999999999998432    1  11222223468887  679998754 4456666778888777643 2111  1 


Q ss_pred             -CCchHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc----CCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEE
Q 012296          389 -GALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE  461 (466)
Q Consensus       389 -~~lsp~~a~l~l~~L~tl~~--R~~~~~~na~~La~~L~~----~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfe  461 (466)
                       -+-+|.+|..++..|+-++.  .+++..+...++.+.|++    +|.|..|                  +|.|.|..+|
T Consensus       319 TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdV------------------R~~Gli~~iE  380 (449)
T COG0161         319 TYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDV------------------RGLGLIGAIE  380 (449)
T ss_pred             ccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEe------------------eccceEEEEE
Confidence             23478888888877776542  344445555555555554    4566655                  5566676666


Q ss_pred             ec
Q 012296          462 VL  463 (466)
Q Consensus       462 l~  463 (466)
                      +.
T Consensus       381 lv  382 (449)
T COG0161         381 LV  382 (449)
T ss_pred             Ee
Confidence            64

>PRK06917 hypothetical protein; Provisional

Probab=99.21  E-value=4.6e-09  Score=111.69  Aligned_cols=237  Identities=14%  Similarity=0.175  Sum_probs=142.3

Q ss_pred             CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc-------C-CCEEEEcCCCCcchHHHHHhhcc----
Q 012296          206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVLP----  271 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~-------~-Gd~Vlv~~~~y~~t~~~~~~~l~----  271 (466)
                      .+.++...+|.++|+++...  +.+++++||++|+..+++....       + ..+|+.....|++..........    
T Consensus        70 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~  149 (447)
T PRK06917         70 QFTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLR  149 (447)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccc
Confidence            35678888899999998754  4677789999999999875421       2 35788888888884322111100    


Q ss_pred             --cCC---ceEEEeC----------C-------CCHHHHHHhhcC---CCceEEEEeCCCCC-Cccccc----HHHHHHH
Q 012296          272 --KMG---ITATVID----------P-------ADMEGLEAALNN---NNVSLFFTESPTNP-FLRCVD----VKLVSDL  321 (466)
Q Consensus       272 --~~G---i~v~~vd----------~-------~Dle~Le~ai~~---~~tklV~lesP~NP-tG~v~d----l~~Ia~l  321 (466)
                        .++   -.+..++          .       .+++.+++.++.   +++.+|++|....- .|.+.+    +++|.++
T Consensus       150 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~l  229 (447)
T PRK06917        150 RQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEI  229 (447)
T ss_pred             cccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHH
Confidence              000   0011110          0       124566777752   24899999987643 344443    7899999


Q ss_pred             HHhcCCEEEEeCCCCCC------CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH--HhCC--Cc
Q 012296          322 CHKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGG--AL  391 (466)
Q Consensus       322 a~~~gillIvDea~a~~------~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--~~G~--~l  391 (466)
                      |+++|+++|+||++...      +.........|+++  ++|.++++ -...|++++++++++.+.....  ..+.  ..
T Consensus       230 c~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~--~gK~l~~G-~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~g  306 (447)
T PRK06917        230 CDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMT--LGKGLGAG-YTPIAATVVSDRVMEPILRGSRSIMSGHTLSA  306 (447)
T ss_pred             HHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEE--eeehhccC-CcceEEEEEcHHHHHHHhccCcccccccCCCC
Confidence            99999999999996531      11122233468876  68999864 1236788888998887653211  1122  23


Q ss_pred             hHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc----CCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEec
Q 012296          392 NPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVL  463 (466)
Q Consensus       392 sp~~a~l~l~~L~tl~~--R~~~~~~na~~La~~L~~----~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~  463 (466)
                      +|..+.+++..++.+..  .+++..+.-+++.+.|++    +|.|..|                  +|.|.|++|++.
T Consensus       307 npl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rG~Gl~~~ie~~  366 (447)
T PRK06917        307 NPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDV------------------RGKGLLIGVEFV  366 (447)
T ss_pred             CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEE------------------eecceEEEEEEe
Confidence            56666666666665532  234444444555555543    4444443                  566777777763

>PRK07483 hypothetical protein; Provisional

Probab=99.20  E-value=4.4e-09  Score=111.73  Aligned_cols=236  Identities=16%  Similarity=0.239  Sum_probs=140.3

Q ss_pred             CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------CC-CEEEEcCCCCcchHHHHHhh-----c-
Q 012296          207 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETV-----L-  270 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g--~e~~l~~sSGs~Ai~~al~all~-------~G-d~Vlv~~~~y~~t~~~~~~~-----l-  270 (466)
                      +.++...+|.++|+++..  .+.+.+++||++|+..++.....       +| .+||.....|++........     . 
T Consensus        70 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~  149 (443)
T PRK07483         70 FTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRR  149 (443)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccc
Confidence            457888889999999864  36788889999999988874331       23 46888888888742111010     0 


Q ss_pred             ccCC---ceEEEeCC----CC--------------HHHHHHhhc---CCCceEEEEeCCCC-CCccccc----HHHHHHH
Q 012296          271 PKMG---ITATVIDP----AD--------------MEGLEAALN---NNNVSLFFTESPTN-PFLRCVD----VKLVSDL  321 (466)
Q Consensus       271 ~~~G---i~v~~vd~----~D--------------le~Le~ai~---~~~tklV~lesP~N-PtG~v~d----l~~Ia~l  321 (466)
                      ..++   ..+..++.    .+              ++++++++.   ..++.+|++|.... ..|.+.+    +++|.++
T Consensus       150 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~l  229 (443)
T PRK07483        150 EPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREV  229 (443)
T ss_pred             cccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHH
Confidence            0010   01122211    01              256666553   23489999998764 2355543    8899999


Q ss_pred             HHhcCCEEEEeCCCCCC------CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH--HHhCCC--c
Q 012296          322 CHKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGA--L  391 (466)
Q Consensus       322 a~~~gillIvDea~a~~------~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~--~~~G~~--l  391 (466)
                      |++||+++|+||++...      +...-.....||++  ++|.++++ -...|.+++++++++.+....  ...+.+  -
T Consensus       230 c~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~gG-~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~g  306 (443)
T PRK07483        230 CDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVT--IAKGLGAG-YQPIGAVLASDRIYDAIADGSGFFQHGHTYLG  306 (443)
T ss_pred             HHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeee--ehhhhccC-ccccEEEEEcHHHHHHHhcCCCccccCCCCCC
Confidence            99999999999995432      11122233468887  58999875 123677888888887765311  011222  3


Q ss_pred             hHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH----cCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEec
Q 012296          392 NPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILE----AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVL  463 (466)
Q Consensus       392 sp~~a~l~l~~L~tl~~--R~~~~~~na~~La~~L~----~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~  463 (466)
                      +|..+.+++..++.++.  .+++..+..++|.+.|+    ++|.|..|                  +|.|.|++||+.
T Consensus       307 npl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------RG~Glm~gie~~  366 (443)
T PRK07483        307 HATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVGDI------------------RGRGLFVGVELV  366 (443)
T ss_pred             CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCeeeE------------------eecccEEEEEEe
Confidence            56666665555555432  22333344444444443    34544444                  566667776663

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=99.20  E-value=1e-09  Score=111.29  Aligned_cols=238  Identities=18%  Similarity=0.243  Sum_probs=149.0

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhh--cccC--
Q 012296          202 FEYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV--LPKM--  273 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~--l~~~--  273 (466)
                      |...-|.+|...++.++|++.+-.  ..+++++||++|+.++++...  ...-+||.-+..|++.......+  +..+  
T Consensus        84 H~t~~~~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~  163 (442)
T KOG1404|consen   84 HTTSGYLNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQ  163 (442)
T ss_pred             EeeccccCCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccc
Confidence            344556678888888888887754  567778899999999886542  22337788888888743221110  1110  


Q ss_pred             ---Cc--eEEE-eCC--------CC---------HHHHHHhhc---CCCceEEEEeCCCCCCccccc----HHHHHHHHH
Q 012296          274 ---GI--TATV-IDP--------AD---------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCH  323 (466)
Q Consensus       274 ---Gi--~v~~-vd~--------~D---------le~Le~ai~---~~~tklV~lesP~NPtG~v~d----l~~Ia~la~  323 (466)
                         +.  .+.. ..+        .+         .+++++.+.   +..+.+++.|+.....|.+..    +++..++|+
T Consensus       164 ~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~  243 (442)
T KOG1404|consen  164 NFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVR  243 (442)
T ss_pred             cCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHH
Confidence               00  0000 000        01         244444443   234788999999877777764    899999999


Q ss_pred             hcCCEEEEeCCCCCC----CcccccccC--CcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH---HHhCCCchHH
Q 012296          324 KKGAIVCIDGTFATP----LNQKALSLG--ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLGGALNPN  394 (466)
Q Consensus       324 ~~gillIvDea~a~~----~~~~~l~~g--aDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~---~~~G~~lsp~  394 (466)
                      ++|.++|.||++...    ....-..+|  .||+  ++.|.+|..  ...|.++..+|+.+.+.+..   +.+|+  +|+
T Consensus       244 k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIv--TmAKgiGnG--~Pl~AVvtt~EIa~v~~~~~~~fnTygg--nP~  317 (442)
T KOG1404|consen  244 KRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIV--TMAKGIGNG--FPLGAVVTTPEIADVLNQKSSHFNTYGG--NPV  317 (442)
T ss_pred             HcCCEEEehhhhhccccccccccccccCCCccHH--HHHhhccCC--CcceeeecCHHHHHHHHhccccccccCC--Cch
Confidence            999999999995431    111111223  3554  589999876  35688888899888776543   33344  566


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--------cCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEeccC
Q 012296          395 AAYLIIRGMKTLHLRVQQQNSTALRMAKILE--------AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLME  465 (466)
Q Consensus       395 ~a~l~l~~L~tl~~R~~~~~~na~~La~~L~--------~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~~  465 (466)
                      .+...+..|+-++  -+++++|+..+..+|.        +||.|..|                  +|.|.|+.+|+-++
T Consensus       318 a~avg~aVL~Vik--ee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdV------------------RG~GLm~GvE~V~d  376 (442)
T KOG1404|consen  318 ACAVGLAVLKVIK--EENLQENAAEVGSYLLEKLAALKDKHPIIGDV------------------RGRGLMLGVELVSD  376 (442)
T ss_pred             hHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHhhcCCceeec------------------ccceeEEEEEEecc
Confidence            6666666666553  3456666665555554        34555444                  78888999988664

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.19  E-value=5.9e-09  Score=110.24  Aligned_cols=218  Identities=13%  Similarity=0.120  Sum_probs=133.7

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc-------CC-CEEEEcCCCCcchHHHHHhhcc-----
Q 012296          207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETVLP-----  271 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~-------~G-d~Vlv~~~~y~~t~~~~~~~l~-----  271 (466)
                      ..++...++.++|+++.+.  +.+.+++||++|+..++.....       +| .+||.....|++..........     
T Consensus        85 ~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~  164 (427)
T TIGR00508        85 FTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSM  164 (427)
T ss_pred             cCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccc
Confidence            4567778888888888754  5788889999999888875431       22 5789889888874322111100     


Q ss_pred             --cC-C-c-eEEEeC-----------CCCHHHHHHhhcC--CCceEEEEeCC-CCCCccc----ccHHHHHHHHHhcCCE
Q 012296          272 --KM-G-I-TATVID-----------PADMEGLEAALNN--NNVSLFFTESP-TNPFLRC----VDVKLVSDLCHKKGAI  328 (466)
Q Consensus       272 --~~-G-i-~v~~vd-----------~~Dle~Le~ai~~--~~tklV~lesP-~NPtG~v----~dl~~Ia~la~~~gil  328 (466)
                        .+ + . .+..++           ..|++++++.+..  .++.+|++|.. .+-.|..    ..+++|.++|+++|++
T Consensus       165 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~l  244 (427)
T TIGR00508       165 HSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDIL  244 (427)
T ss_pred             cccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence              00 0 0 001111           1145677777752  24789999985 5444433    3589999999999999


Q ss_pred             EEEeCCCCCC-C-----cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH---HHhCC--CchHHHHH
Q 012296          329 VCIDGTFATP-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLGG--ALNPNAAY  397 (466)
Q Consensus       329 lIvDea~a~~-~-----~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~---~~~G~--~lsp~~a~  397 (466)
                      +|+||++.+. .     .........|+++  ++|.++|+ -...+.+++++++++.++...   ...+.  ..+|..+.
T Consensus       245 lI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~--~gK~l~gG-~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~a  321 (427)
T TIGR00508       245 LIADEIATGFGRTGKLFACEHAGVVPDILC--VGKALTGG-YMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACA  321 (427)
T ss_pred             EEEeccccCCCcCCccchhhhcCCCCCEEE--echhhhcC-cccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHH
Confidence            9999996321 1     1112233568776  79999653 234688888999988876321   01111  23566665


Q ss_pred             HHHHhhHHHH--HHHHHHHHHHHHHHHHHHcC
Q 012296          398 LIIRGMKTLH--LRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       398 l~l~~L~tl~--~R~~~~~~na~~La~~L~~~  427 (466)
                      .++..++.+.  ...++..++..+|.+.|++.
T Consensus       322 aa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l  353 (427)
T TIGR00508       322 VAEASLAILLEGEWQKQVSAIENQLKRELSPL  353 (427)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence            5555555443  23455666677777777653

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.17  E-value=3e-09  Score=113.73  Aligned_cols=215  Identities=16%  Similarity=0.179  Sum_probs=138.0

Q ss_pred             CchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhh----c-----c-cCC
Q 012296          208 GNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV----L-----P-KMG  274 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g-~e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~----l-----~-~~G  274 (466)
                      .++...+|.++|.+... .+.+.+++||++|+..+++...  ...++||.....|++....+...    .     . ..|
T Consensus       137 ~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g  216 (474)
T PLN02482        137 PCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPG  216 (474)
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCC
Confidence            56667788888888775 4778888999999999887542  23467888888888843221100    0     0 111


Q ss_pred             c------eEEEeCCCCHHHHHHhhcC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC----
Q 012296          275 I------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP----  338 (466)
Q Consensus       275 i------~v~~vd~~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~----  338 (466)
                      +      .+..++..|++++++.++.  .++.+|++|......|.+.+    +++|.++|++||+++|+||++...    
T Consensus       217 ~~~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~  296 (474)
T PLN02482        217 VPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAY  296 (474)
T ss_pred             CCCCCCCCeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCc
Confidence            1      2233455688999988853  24889999988777787765    678999999999999999996421    


Q ss_pred             -CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH-HHhCCC--chHHHHHHHHHhhHHHH--HHHHH
Q 012296          339 -LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HVLGGA--LNPNAAYLIIRGMKTLH--LRVQQ  412 (466)
Q Consensus       339 -~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~-~~~G~~--lsp~~a~l~l~~L~tl~--~R~~~  412 (466)
                       ..+.......|+++  ++|.++++  ...|.+++++++++.+.... ...+.+  .+|..+.+++..|+.+.  ..+++
T Consensus       297 ~ga~~~~gv~PDi~t--~gK~lggG--~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~  372 (474)
T PLN02482        297 GGAQEYFGITPDLTT--LGKVIGGG--LPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEY  372 (474)
T ss_pred             chHhHHhCCCCCEEE--ecchhhCC--CceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHH
Confidence             11111223467764  78999864  34566789999988775211 112222  34555555555555543  23455


Q ss_pred             HHHHHHHHHHHHHc
Q 012296          413 QNSTALRMAKILEA  426 (466)
Q Consensus       413 ~~~na~~La~~L~~  426 (466)
                      ..+..+++.+.|++
T Consensus       373 ~~~~g~~l~~~L~~  386 (474)
T PLN02482        373 LDKITKKLIQGILE  386 (474)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55556666666653

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.17  E-value=5.6e-09  Score=117.73  Aligned_cols=238  Identities=15%  Similarity=0.154  Sum_probs=141.7

Q ss_pred             CCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHHcc---------------------CCCEEEEcCCCCcc
Q 012296          206 RYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALVP---------------------AGGHIVTTTDCYRK  261 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g---~e~~l~~sSGs~Ai~~al~all~---------------------~Gd~Vlv~~~~y~~  261 (466)
                      .+.++...+|.++|.+..+   .+.+++.+||++|+..++...++                     ...+||.-...|++
T Consensus       405 ~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG  484 (817)
T PLN02974        405 ENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHG  484 (817)
T ss_pred             ccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCC
Confidence            3456777888888888664   25677888999998888764321                     12368988888887


Q ss_pred             -hHHHHHhh--------c-cc----CCceE----EE---------eCCC-------------------------------
Q 012296          262 -TRIFIETV--------L-PK----MGITA----TV---------IDPA-------------------------------  283 (466)
Q Consensus       262 -t~~~~~~~--------l-~~----~Gi~v----~~---------vd~~-------------------------------  283 (466)
                       +...+...        . ..    .+..+    .+         ++..                               
T Consensus       485 ~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~  564 (817)
T PLN02974        485 DTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKA  564 (817)
T ss_pred             CCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccccccccccccccccccccchhhhHH
Confidence             22221100        0 00    00000    00         0000                               


Q ss_pred             CHHHHHHhhc-------CCCceEEEEeCC-CCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC------Ccccccc
Q 012296          284 DMEGLEAALN-------NNNVSLFFTESP-TNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------LNQKALS  345 (466)
Q Consensus       284 Dle~Le~ai~-------~~~tklV~lesP-~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~------~~~~~l~  345 (466)
                      ..+.+++.|+       .+++.+|++|.. ..-.|.+.+    +++|.++|++||+++|.||++.+.      +......
T Consensus       565 ~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~g  644 (817)
T PLN02974        565 YRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLG  644 (817)
T ss_pred             HHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcC
Confidence            0245666664       235899999985 555676653    789999999999999999996542      1122233


Q ss_pred             cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH----HHhC--CCchHHHHHHHHHhhHHHHHH--HHHHHHHH
Q 012296          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH----HVLG--GALNPNAAYLIIRGMKTLHLR--VQQQNSTA  417 (466)
Q Consensus       346 ~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~----~~~G--~~lsp~~a~l~l~~L~tl~~R--~~~~~~na  417 (466)
                      .-.||++  +.|.++|+ -+..|.+++++++++.+..-.    ...|  .+-+|..+..++..|+.++..  .++..++.
T Consensus       645 v~PDIi~--~gKgLtgG-~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~  721 (817)
T PLN02974        645 CKPDIAC--YAKLLTGG-LVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPG  721 (817)
T ss_pred             CCCCEEe--ecccccCC-CCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            3468888  67999875 234688888999988774210    0112  234677777777666665431  11222222


Q ss_pred             H--------HHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          418 L--------RMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       418 ~--------~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      +        .+.+.|.++|.|..|                  +|.|.|++||+.+
T Consensus       722 ~~l~~~l~~~l~~~l~~~p~V~~V------------------Rg~Gl~~~iel~~  758 (817)
T PLN02974        722 SRLRELWDEELVRAISSLPNVERV------------------VSLGTVLALELDA  758 (817)
T ss_pred             HHHHHHHHHHHHHHHhhCCCeeEE------------------EeeeeEEEEEEec
Confidence            2        232344567777666                  4566777777643

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.14  E-value=1e-08  Score=109.34  Aligned_cols=232  Identities=13%  Similarity=0.119  Sum_probs=135.6

Q ss_pred             CCchhHHHHHHHHHhhhCCC----cEEEe-CCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhc---------
Q 012296          207 YGNPTTVVVEEKMSALEGAE----STVIM-ASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL---------  270 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~e----~~l~~-sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l---------  270 (466)
                      +.++...+|.++|.++....    ..+++ +||++|+..++....  ...++||.....|++........-         
T Consensus        98 ~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~  177 (459)
T PRK06931         98 LTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAV  177 (459)
T ss_pred             cCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCC
Confidence            46788888999999887532    24455 799999999887442  334678888888888432221110         


Q ss_pred             ccCCceEEEeCCC-------------CHHH----HHHhhcC-----CCceEEEEeCCCCCCccccc----HHHHHHHHHh
Q 012296          271 PKMGITATVIDPA-------------DMEG----LEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDLCHK  324 (466)
Q Consensus       271 ~~~Gi~v~~vd~~-------------Dle~----Le~ai~~-----~~tklV~lesP~NPtG~v~d----l~~Ia~la~~  324 (466)
                      ....-.+..++..             +.+.    +++.++.     .++.+|++|......|.+.+    +++|.++|++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~  257 (459)
T PRK06931        178 NGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQK  257 (459)
T ss_pred             CCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHH
Confidence            0000112222211             1222    2333321     24899999988766676553    8899999999


Q ss_pred             cCCEEEEeCCCCCC------CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCC--CchHHHH
Q 012296          325 KGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG--ALNPNAA  396 (466)
Q Consensus       325 ~gillIvDea~a~~------~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~--~lsp~~a  396 (466)
                      ||+++|.||++...      +.......-.|+++  +.|.++++  ...|++++++++ +.+...  ..+.  .-+|..+
T Consensus       258 ~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt--~gK~l~gG--~Pi~av~~~~~~-~~~~~~--~~~~T~~gnpla~  330 (459)
T PRK06931        258 HGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIV--MSKAVGGG--LPLAVLGIKKEF-DAWQPG--GHTGTFRGNQLAM  330 (459)
T ss_pred             cCCEEEEecchhcCCcCchHHHhhhcCCCCCEEE--ecccccCC--cceeeeeeHHHH-hhccCC--CCCCCCCCCHHHH
Confidence            99999999995432      11222333478887  58999875  345677777653 443211  1222  2356766


Q ss_pred             HHHHHhhHHHHH--HHHHHHHHHHHHHHHHH----cCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEec
Q 012296          397 YLIIRGMKTLHL--RVQQQNSTALRMAKILE----AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVL  463 (466)
Q Consensus       397 ~l~l~~L~tl~~--R~~~~~~na~~La~~L~----~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~  463 (466)
                      .+++..|+.+..  .+++..+.-++|.+.|+    ++|.|..|                  +|.|.|++||+.
T Consensus       331 aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~v------------------rG~Glm~giel~  385 (459)
T PRK06931        331 ATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGNV------------------RGRGLMIGIEIV  385 (459)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEeE------------------ecCceEEEEEEc
Confidence            666666665532  12333333334444443    35555444                  567777777774

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.13  E-value=1.6e-09  Score=112.42  Aligned_cols=204  Identities=14%  Similarity=0.141  Sum_probs=133.2

Q ss_pred             hhHHHHHHHHHhhhCCC--c-E-EEeCCHHHHHHHHHHHHc-cCCCEEEEcCCCCcchHHHHHhhcccCCc-eEEEeC--
Q 012296          210 PTTVVVEEKMSALEGAE--S-T-VIMASGMSASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGI-TATVID--  281 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e--~-~-l~~sSGs~Ai~~al~all-~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi-~v~~vd--  281 (466)
                      ....++++.|.++++.+  . + ++.+||+.++.+++.+++ ++|+++++.. .|+.  ++...+++.+|+ +++.++  
T Consensus        39 ~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~--r~~~eia~~~g~~~v~~l~~~  115 (374)
T TIGR01365        39 EKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGK--GWVTDVTKQLKLPDVRVLEAE  115 (374)
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHH--HHHHHHHHhcCCCCcEEEcCC
Confidence            33456688888888852  2 3 445788999999999999 5898888753 3332  334356667787 355554  


Q ss_pred             ---CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC-CcccccccCCcEEEECCcc
Q 012296          282 ---PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATK  357 (466)
Q Consensus       282 ---~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~-~~~~~l~~gaDivv~S~sK  357 (466)
                         ..++++++.  ++   . |++.+--..||...|+++|.+..  +++++|+|.+-+.+ ...+..  ++|+++.|..|
T Consensus       116 ~g~~~~~~~ve~--~~---~-v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d--~iDv~~tgsQK  185 (374)
T TIGR01365       116 YGKLPDLKKVDF--KN---D-VVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYH--KLDVVTFSWQK  185 (374)
T ss_pred             CCCCCCHHHcCC--CC---C-EEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCCChh--HCcEEEEechh
Confidence               236777762  22   2 34444444679999997666332  58999999985432 222222  49999999999


Q ss_pred             ccCccccceeEEEEeCHHHHHHHHHHH---------H----------Hh-CC---CchHHHHHHHHHhhH------HHHH
Q 012296          358 FIGGHNDVLAGSISGSGKLVTQIRNLH---------H----------VL-GG---ALNPNAAYLIIRGMK------TLHL  408 (466)
Q Consensus       358 ~lgg~gdv~gG~ivg~~eli~~l~~~~---------~----------~~-G~---~lsp~~a~l~l~~L~------tl~~  408 (466)
                      .|++++  ..++++.+++.++++....         .          .. +.   +.+-...+.++..++      -++.
T Consensus       186 ~L~~pp--Gls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~  263 (374)
T TIGR01365       186 VLGGEG--AHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKP  263 (374)
T ss_pred             ccCCCC--ceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHH
Confidence            999998  4578888888776654210         0          01 11   112223333333332      2778


Q ss_pred             HHHHHHHHHHHHHHHHHcCC
Q 012296          409 RVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       409 R~~~~~~na~~La~~L~~~p  428 (466)
                      |.+++.++++.+.+++++.+
T Consensus       264 ~~~Rh~~~a~~l~~~l~~lg  283 (374)
T TIGR01365       264 LIARADDNLAVLEAFVAKNN  283 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHCC
Confidence            89999999999999999875

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.12  E-value=1.2e-09  Score=114.34  Aligned_cols=209  Identities=20%  Similarity=0.241  Sum_probs=131.8

Q ss_pred             HHHHHHHHHhhhCCCc--EEEeCCHHHHHHHHHHH---HccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHH
Q 012296          212 TVVVEEKMSALEGAES--TVIMASGMSASTVMLLA---LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME  286 (466)
Q Consensus       212 ~~~Lee~LA~l~g~e~--~l~~sSGs~Ai~~al~a---ll~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle  286 (466)
                      .-+++..|+++.|.+-  +-+...++++-.+++++   --+++++|+++...|+.+...++..+...|+++..++..+..
T Consensus       112 lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~  191 (429)
T PF02347_consen  112 LFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDG  191 (429)
T ss_dssp             HHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTC
T ss_pred             HHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccC
Confidence            3467999999999864  24455555433333333   233456999999999999888888888889999887744211


Q ss_pred             HHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCC--CCCCCcccccccCCcEEEECCccccCcccc
Q 012296          287 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT--FATPLNQKALSLGADLVLHSATKFIGGHND  364 (466)
Q Consensus       287 ~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea--~a~~~~~~~l~~gaDivv~S~sK~lgg~gd  364 (466)
                      ...   ++ ++.+|++++|+ -.|.+.|+++|++++|++|.++++ .+  .+-.....|.++|+||++.+ +|.||.|..
T Consensus       192 ~~d---~~-~~a~v~vq~Pn-~~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~  264 (429)
T PF02347_consen  192 TTD---DD-DTAAVMVQNPN-TFGVFEDIKEIADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFGIPMG  264 (429)
T ss_dssp             SB----ST-TEEEEEEESS--TTSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT---C
T ss_pred             Ccc---cc-CeEEEEeecCC-CCceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCcccCC
Confidence            111   44 49999999997 589999999999999999999988 55  23345678889999999887 777653321


Q ss_pred             c---eeEEEEeCHHHHHHHHHH-------------------------HH-----HhCCC--ch--HHHHHHHHHhhHHHH
Q 012296          365 V---LAGSISGSGKLVTQIRNL-------------------------HH-----VLGGA--LN--PNAAYLIIRGMKTLH  407 (466)
Q Consensus       365 v---~gG~ivg~~eli~~l~~~-------------------------~~-----~~G~~--ls--p~~a~l~l~~L~tl~  407 (466)
                      .   .+|++.++++++.++-..                         ++     .++.+  +.  ....|+.+.|-+-|.
T Consensus       265 ~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~  344 (429)
T PF02347_consen  265 FGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLR  344 (429)
T ss_dssp             CC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHH
Confidence            1   268888888766554211                         00     01111  11  123556666666676


Q ss_pred             HHHHHHHHHHHHHHHHHHcC
Q 012296          408 LRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       408 ~R~~~~~~na~~La~~L~~~  427 (466)
                      .--++...++.++++.|++.
T Consensus       345 ~iA~~~~~~A~yl~~~L~~~  364 (429)
T PF02347_consen  345 EIAERIHLNAHYLAERLKKI  364 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            66778889999999999986

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.12  E-value=3.8e-09  Score=119.55  Aligned_cols=158  Identities=21%  Similarity=0.295  Sum_probs=123.5

Q ss_pred             HHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc---cCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHH
Q 012296          213 VVVEEKMSALEGAE--STVIMASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (466)
Q Consensus       213 ~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all---~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~  287 (466)
                      -+++..+++|.|.+  ++-++..++++..+++++..   +++++|++++..|+.+...++..+...|++++.++   +++
T Consensus       112 ~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~---~~~  188 (939)
T TIGR00461       112 LNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD---CSD  188 (939)
T ss_pred             HHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc---HHH
Confidence            35688999999986  55777788876666666542   23489999999999998888877888999988774   566


Q ss_pred             HHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCC-CCCcccccccCCcEEEECCcccc-----Cc
Q 012296          288 LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA-TPLNQKALSLGADLVLHSATKFI-----GG  361 (466)
Q Consensus       288 Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a-~~~~~~~l~~gaDivv~S~sK~l-----gg  361 (466)
                      |++.+  + +.++++.+|+ -+|.+.|+++|++++|++|++++++.-.. ..+...|.++|+||++.+..++-     ||
T Consensus       189 l~~~~--~-~~~v~~q~Pn-~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~GG  264 (939)
T TIGR00461       189 IKKAV--D-VFGCLLQYPA-TDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYGG  264 (939)
T ss_pred             HhhcC--C-EEEEEEECCC-CCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCCC
Confidence            77666  2 7899999996 68999999999999999999999966533 34567888999999988776663     35


Q ss_pred             cccceeEEEEeCHHHHHHH
Q 012296          362 HNDVLAGSISGSGKLVTQI  380 (466)
Q Consensus       362 ~gdv~gG~ivg~~eli~~l  380 (466)
                      |+   +|++..++++..++
T Consensus       265 P~---aG~~a~~~~l~r~l  280 (939)
T TIGR00461       265 PH---AAFFAVKDEYNRKM  280 (939)
T ss_pred             Cc---eeeeeecHhhHhhC
Confidence            53   78998888776554

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.11  E-value=4e-09  Score=104.87  Aligned_cols=209  Identities=19%  Similarity=0.216  Sum_probs=139.3

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc------c--CCC--EEEEcCCCCcc-hHH---------HHHhh
Q 012296          210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV------P--AGG--HIVTTTDCYRK-TRI---------FIETV  269 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all------~--~Gd--~Vlv~~~~y~~-t~~---------~~~~~  269 (466)
                      ....++++.+.+++|.+..+-+.+|.+|...++.-..      +  |.|  .|+.....|++ +..         .+...
T Consensus       101 d~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~f  180 (427)
T KOG1402|consen  101 DVLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGF  180 (427)
T ss_pred             hhHHHHHHHHHHhcCcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhcc
Confidence            4456789999999999999999999999998876432      1  222  45555555554 111         11111


Q ss_pred             cccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC------C
Q 012296          270 LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------L  339 (466)
Q Consensus       270 l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~------~  339 (466)
                      -.-....+..++-.|.++|+.+++..+++++++|.....-|.+.|    ++++.++|.+|++++|.||++.+-      +
T Consensus       181 gp~~P~~~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~l  260 (427)
T KOG1402|consen  181 GPFLPGVVDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLL  260 (427)
T ss_pred             CCCCCCcceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEE
Confidence            111122356677789999999998877999999999988998876    899999999999999999996531      1


Q ss_pred             cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH--HHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHH
Q 012296          340 NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTA  417 (466)
Q Consensus       340 ~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~--~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na  417 (466)
                      ..+-.....|+|+  +.|.|+|+-- ....++.+++++-.+..-.  ..+|+  +|+.+..+...|+-+.  -+++.+++
T Consensus       261 a~d~env~PDivi--lgKalSGG~~-Pvsavl~~~~im~~~~pgeHgsTygg--NpLg~~vaiAalevi~--eekL~era  333 (427)
T KOG1402|consen  261 ACDYENVRPDIVI--LGKALSGGVY-PVSAVLADDDIMLNIKPGEHGSTYGG--NPLGCAVAIAALEVIV--EEKLVERA  333 (427)
T ss_pred             EeehhhcCCCeEE--EeccccCCee-eeEEEEecHHHHhccCCCccccccCC--ChHHHHHHHHHHHHHH--HHHHHHHH
Confidence            1222334578998  7899987643 3445556777776554322  23333  5666666665665543  24556666


Q ss_pred             HHHHHHHH
Q 012296          418 LRMAKILE  425 (466)
Q Consensus       418 ~~La~~L~  425 (466)
                      ..|.+.|.
T Consensus       334 ~~lG~~l~  341 (427)
T KOG1402|consen  334 AKLGEILR  341 (427)
T ss_pred             HHHHHHHH
Confidence            66555544

>PRK06148 hypothetical protein; Provisional

Probab=99.11  E-value=1.5e-08  Score=117.42  Aligned_cols=215  Identities=16%  Similarity=0.151  Sum_probs=132.3

Q ss_pred             cCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHH-HH----hhcccCC-
Q 012296          205 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIF-IE----TVLPKMG-  274 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~-~~----~~l~~~G-  274 (466)
                      .++.++...+|.++|+++...  +.+.+++||++|+.++++...  ....+||+....|++.... +.    ..-...+ 
T Consensus       658 ~~~~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~  737 (1013)
T PRK06148        658 TRYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGK  737 (1013)
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCC
Confidence            366788889999999998753  567888999999999887543  2345788888888873211 10    0000001 


Q ss_pred             ---ceEEEe--------CC--CC-------HHHHHHhhc-----CCCceEEEEeCCCCCCccccc----HHHHHHHHHhc
Q 012296          275 ---ITATVI--------DP--AD-------MEGLEAALN-----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKK  325 (466)
Q Consensus       275 ---i~v~~v--------d~--~D-------le~Le~ai~-----~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~  325 (466)
                         -.+..+        +.  .+       .+.+++.++     ..++.+|++|......|.+.+    +++|.++|+++
T Consensus       738 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~  817 (1013)
T PRK06148        738 GRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAA  817 (1013)
T ss_pred             CCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHh
Confidence               011110        11  11       134555443     134899999988766676665    89999999999


Q ss_pred             CCEEEEeCCCCC----C--C-cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHH---HHHhCCCchHHH
Q 012296          326 GAIVCIDGTFAT----P--L-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL---HHVLGGALNPNA  395 (466)
Q Consensus       326 gillIvDea~a~----~--~-~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~---~~~~G~~lsp~~  395 (466)
                      |+++|.||++.+    +  + .+.-...-.||++  +.|.++++  ...|.+++++++++.+..-   ...++  -+|..
T Consensus       818 g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt--~gK~lggG--~Plgav~~~~ei~~~~~~g~~~~~Tf~--gnpla  891 (1013)
T PRK06148        818 GGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVT--MGKPIGNG--HPMGAVVTTREIADSFDNGMEYFNTFG--GNPVS  891 (1013)
T ss_pred             CCEEEEEecccCCCCCCCcchhhhhcCCCcceee--ecccccCC--cceEEEEEcHHHHhhccCCCccccCCC--CCHHH
Confidence            999999999642    1  1 1222233468877  68999875  3578888899998876421   11222  35666


Q ss_pred             HHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH
Q 012296          396 AYLIIRGMKTLHL--RVQQQNSTALRMAKILE  425 (466)
Q Consensus       396 a~l~l~~L~tl~~--R~~~~~~na~~La~~L~  425 (466)
                      +.+++..|+.+..  .+++..+.-++|.+.|+
T Consensus       892 ~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~  923 (1013)
T PRK06148        892 CAIGLAVLDIIEDEDLQRNALEIGNYLLAGLR  923 (1013)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            6666666665532  12333334444444443

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.09  E-value=1.5e-09  Score=107.75  Aligned_cols=162  Identities=19%  Similarity=0.277  Sum_probs=117.6

Q ss_pred             HHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHc--cCCCEEEEcCCCCcchHHHH-HhhcccCCceEEEeCCCCHH
Q 012296          212 TVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALV--PAGGHIVTTTDCYRKTRIFI-ETVLPKMGITATVIDPADME  286 (466)
Q Consensus       212 ~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~-~~~l~~~Gi~v~~vd~~Dle  286 (466)
                      -+.|-.+||-+.|+ +..++++.++ .-+..+|.+.+  ++|+.||+++..-+++-.++ .......++..+..-.+.++
T Consensus        78 p~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~~~~~~~P~  157 (407)
T COG3844          78 PERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYDLEGVIAPR  157 (407)
T ss_pred             hhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcccccceeeeChH
Confidence            35688889999998 3444444444 55555665554  34888888876555543332 22333334332222234578


Q ss_pred             HHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEECCccccCccccc
Q 012296          287 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFIGGHNDV  365 (466)
Q Consensus       287 ~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S~sK~lgg~gdv  365 (466)
                      +++++++++ +.+|++.+.+.-||...|+.+|.+++|++|++++.|=+++.+. ..+.-..|+|+-+.+.+||++|+.+.
T Consensus       158 ~~~~~~~dd-~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGa  236 (407)
T COG3844         158 ALEEAITDD-VAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGA  236 (407)
T ss_pred             HHHHhhccc-eEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCC
Confidence            999999986 9999999999899999999999999999999999999987654 35555679999999999999887766


Q ss_pred             eeEEEEeCH
Q 012296          366 LAGSISGSG  374 (466)
Q Consensus       366 ~gG~ivg~~  374 (466)
                      .+|+.+.++
T Consensus       237 pa~l~v~~~  245 (407)
T COG3844         237 PAGLFVAPR  245 (407)
T ss_pred             ceeEEeccc
Confidence            677776544

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.07  E-value=4.9e-09  Score=103.12  Aligned_cols=174  Identities=16%  Similarity=0.221  Sum_probs=111.0

Q ss_pred             chhHHHHHHHHHhhhCC---CcEEEeCCHH-HHHHHHHHHHc---cCCC--EEEEc-CCCCcchHHHH--HhhcccCCce
Q 012296          209 NPTTVVVEEKMSALEGA---ESTVIMASGM-SASTVMLLALV---PAGG--HIVTT-TDCYRKTRIFI--ETVLPKMGIT  276 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~---e~~l~~sSGs-~Ai~~al~all---~~Gd--~Vlv~-~~~y~~t~~~~--~~~l~~~Gi~  276 (466)
                      .+..+.|.+.+.+-+|.   ++.+.+|+|+ .+..-++.-+-   ..|+  +|+.+ .|.|-+.....  ...+-...-+
T Consensus        77 ~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~  156 (417)
T COG3977          77 AVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKPN  156 (417)
T ss_pred             hHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeeccCC
Confidence            34555666666666675   6799999999 55554443332   3344  45544 56665532110  0011000001


Q ss_pred             EEEeC------CCCHHHHHHhhcCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCccccc---
Q 012296          277 ATVID------PADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQKAL---  344 (466)
Q Consensus       277 v~~vd------~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~---dl~~Ia~la~~~gillIvDea~a~~~~~~~l---  344 (466)
                      ++.++      ..|.++|+  +.+ .+.+|.+.-|+||||.+.   ++.+|.++|++||+++++|++|+.+++.-.+   
T Consensus       157 iel~~~g~FKY~vDF~~l~--i~e-~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~  233 (417)
T COG3977         157 IELLPAGQFKYHVDFEHLH--IGE-STGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDA  233 (417)
T ss_pred             cccccccceeeccCHHHcc--ccc-ccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccc
Confidence            11111      23666664  344 389999999999999997   4677888899999999999999987652211   


Q ss_pred             --cc-CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHh
Q 012296          345 --SL-GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL  387 (466)
Q Consensus       345 --~~-gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~  387 (466)
                        -+ ..-+.+.|+||. |-+| .++|++++++++++.+..+....
T Consensus       234 ~~~w~~NiilC~SLSK~-GLPG-~R~GIiIane~viqaitnmn~ii  277 (417)
T COG3977         234 TPLWNENIILCMSLSKL-GLPG-SRCGIIIANEKVIQAITNMNGII  277 (417)
T ss_pred             cccCCCCEEEEeehhhc-CCCC-cceeEEEccHHHHHHHHhcccee
Confidence              12 245789999995 4454 47999999999999887765543

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.06  E-value=2e-08  Score=106.26  Aligned_cols=211  Identities=16%  Similarity=0.178  Sum_probs=122.4

Q ss_pred             hHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHHc-cCC-CEEEEc-CCCCcchHHHHHhh-cccCCc------eEEE
Q 012296          211 TTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALV-PAG-GHIVTT-TDCYRKTRIFIETV-LPKMGI------TATV  279 (466)
Q Consensus       211 ~~~~Lee~LA~l~g-~e~~l~~sSGs~Ai~~al~all-~~G-d~Vlv~-~~~y~~t~~~~~~~-l~~~Gi------~v~~  279 (466)
                      ...+|.++|+++.. .+.+.+++||++|+..++.... -.| .+|+.. ...|++....+... ....+.      .+..
T Consensus        89 ~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~  168 (431)
T PRK06209         89 IELDAAESFLELIDGADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVT  168 (431)
T ss_pred             HHHHHHHHHHHhCCccceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccc
Confidence            33467888888874 4678888999999999887432 124 355554 33333211111000 000111      1223


Q ss_pred             eCCCCHHHHHHhhcC--CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-----ccccccCCcEEE
Q 012296          280 IDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVL  352 (466)
Q Consensus       280 vd~~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-----~~~l~~gaDivv  352 (466)
                      ++..|+++++++++.  .++.+|++|......+....+++|.++|++||+++|+||++.+...     +......+|+++
T Consensus       169 ~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~~~~gv~PDi~t  248 (431)
T PRK06209        169 FRYNDIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQKLYGIVPDLSC  248 (431)
T ss_pred             cCCCCHHHHHHHHHhCCCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhhHHhCCCcceee
Confidence            445689999988852  2478999987764323333489999999999999999998632111     111222357644


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHH--HHHH--HH--HhCCCc--hHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHH
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQ--IRNL--HH--VLGGAL--NPNAAYLIIRGMKTLHL--RVQQQNSTALRMAK  422 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~--l~~~--~~--~~G~~l--sp~~a~l~l~~L~tl~~--R~~~~~~na~~La~  422 (466)
                        ++|.++++  ..+|++++++++++.  +...  ..  ..+.+.  +|..+..++..|+.+..  .+++..++.+++.+
T Consensus       249 --~gK~lggG--~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~  324 (431)
T PRK06209        249 --FGKALGNG--FAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLAA  324 (431)
T ss_pred             --ehhhhcCC--cccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence              79999974  357888899888875  2111  11  123332  44555555555555432  24444455555555


Q ss_pred             HHH
Q 012296          423 ILE  425 (466)
Q Consensus       423 ~L~  425 (466)
                      .|+
T Consensus       325 ~L~  327 (431)
T PRK06209        325 GVN  327 (431)
T ss_pred             HHH
Confidence            554

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.05  E-value=8.5e-08  Score=105.04  Aligned_cols=220  Identities=14%  Similarity=0.051  Sum_probs=139.3

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHcc---------C----------------------
Q 012296          202 FEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVP---------A----------------------  248 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all~---------~----------------------  248 (466)
                      +..+......-+++-+.+++++|.+  ...++++|+.|+..++.....         .                      
T Consensus       115 ~e~SP~~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~  194 (608)
T TIGR03811       115 YESSPATSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEI  194 (608)
T ss_pred             cccCchHHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccc
Confidence            3334333333345566777888763  578889999887766553321         0                      


Q ss_pred             ---------------------C------CEEEEcCCCCcchHHHHHhhcccCCc---eEEEeCC-----CCHHHHHHhhc
Q 012296          249 ---------------------G------GHIVTTTDCYRKTRIFIETVLPKMGI---TATVIDP-----ADMEGLEAALN  293 (466)
Q Consensus       249 ---------------------G------d~Vlv~~~~y~~t~~~~~~~l~~~Gi---~v~~vd~-----~Dle~Le~ai~  293 (466)
                                           |      -.++++...|.+..+..    ..+|+   .++.++.     .|+++|+++|+
T Consensus       195 ~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa----~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~  270 (608)
T TIGR03811       195 MDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAA----DIIGIGLDQVIPVPVDSNYRMDINELEKIIR  270 (608)
T ss_pred             cccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHH----HHcCCCcccEEEeecCCCCcCCHHHHHHHHH
Confidence                                 0      04777777777755433    33444   2333432     37899988885


Q ss_pred             CC-----CceEEEEeCCCCCCcccccHHHHHHHH---HhcCC--EEEEeCCCCCCC---ccc------c-----------
Q 012296          294 NN-----NVSLFFTESPTNPFLRCVDVKLVSDLC---HKKGA--IVCIDGTFATPL---NQK------A-----------  343 (466)
Q Consensus       294 ~~-----~tklV~lesP~NPtG~v~dl~~Ia~la---~~~gi--llIvDea~a~~~---~~~------~-----------  343 (466)
                      +.     ++-+|+....+..+|.+-|+++|+++|   +++|+  +++||++|++..   ..+      |           
T Consensus       271 ~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~  350 (608)
T TIGR03811       271 KLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEY  350 (608)
T ss_pred             HHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccc
Confidence            31     244566667777899999999999998   66887  699999988642   111      0           


Q ss_pred             -----------------c--ccCCcEEEECCccccCccccceeEEE-EeCHHHHHHHHHHHHH-----------------
Q 012296          344 -----------------L--SLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHV-----------------  386 (466)
Q Consensus       344 -----------------l--~~gaDivv~S~sK~lgg~gdv~gG~i-vg~~eli~~l~~~~~~-----------------  386 (466)
                                       +  -..+|-++..+||++..|-  .+|++ +.++.+.+.+......                 
T Consensus       351 ~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py--~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~l  428 (608)
T TIGR03811       351 GVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPY--SAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYIL  428 (608)
T ss_pred             cccccccccccHhHHHHHhcCcCceEEEeCcccccccCC--CeEEEEEeCHHHHHHHhcCcchhccccccCcccccccce
Confidence                             0  0258999999999998875  35655 4455544433221110                 


Q ss_pred             hCCCc--hHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          387 LGGAL--NPNAAYLIIRGM----KTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       387 ~G~~l--sp~~a~l~l~~L----~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      .|.-.  .....|+.++.+    +-+...+++..++++++++.|+++
T Consensus       429 egSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~  475 (608)
T TIGR03811       429 EGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL  475 (608)
T ss_pred             ecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            11111  245667776544    467888999999999999999883

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.04  E-value=2.1e-08  Score=106.13  Aligned_cols=162  Identities=13%  Similarity=0.161  Sum_probs=101.1

Q ss_pred             CCCchhHHHHHHHHHhhh---CCCcEEEeCCHHHHHHHHHHHHcc--------C------CCEEEEcCCCCcchHHHHHh
Q 012296          206 RYGNPTTVVVEEKMSALE---GAESTVIMASGMSASTVMLLALVP--------A------GGHIVTTTDCYRKTRIFIET  268 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~---g~e~~l~~sSGs~Ai~~al~all~--------~------Gd~Vlv~~~~y~~t~~~~~~  268 (466)
                      .+.++...++-++|+++.   +.+.+.+.+||++|+..++.....        .      +.+||.....|++.......
T Consensus        81 ~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als  160 (431)
T TIGR03251        81 DVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLS  160 (431)
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhh
Confidence            344666777777788774   236788889999999998875421        1      36799999888884222111


Q ss_pred             hc-----c-cCC-------ceEEEe---------C------CCCHHHHHHhhc--CCCceEEEEeCCCCCCcccc----c
Q 012296          269 VL-----P-KMG-------ITATVI---------D------PADMEGLEAALN--NNNVSLFFTESPTNPFLRCV----D  314 (466)
Q Consensus       269 ~l-----~-~~G-------i~v~~v---------d------~~Dle~Le~ai~--~~~tklV~lesP~NPtG~v~----d  314 (466)
                      .-     . ...       +...+.         +      ..+++++++.+.  ..++.+|++|......|.+.    .
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~  240 (431)
T TIGR03251       161 LTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEF  240 (431)
T ss_pred             ccCCccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHH
Confidence            10     0 000       000000         0      012445555663  23489999998887777665    3


Q ss_pred             HHHHHHHHHhcCCEEEEeCCCCCC-C-----cccccccCCcEEEECCccccCccccceeEEEEeCH
Q 012296          315 VKLVSDLCHKKGAIVCIDGTFATP-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG  374 (466)
Q Consensus       315 l~~Ia~la~~~gillIvDea~a~~-~-----~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~  374 (466)
                      +++|.++|++||+++|+||++... .     .........|+++  ++|.+  +   ++|++.+++
T Consensus       241 l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~--~gK~~--~---~~g~~~~~~  299 (431)
T TIGR03251       241 LRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVA--FGKKT--Q---VCGIMAGRR  299 (431)
T ss_pred             HHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEE--ecccC--c---cceEEecch
Confidence            899999999999999999996631 1     1122234578887  67876  2   357776654

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=3e-09  Score=107.72  Aligned_cols=211  Identities=16%  Similarity=0.141  Sum_probs=151.9

Q ss_pred             HHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHh
Q 012296          212 TVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA  291 (466)
Q Consensus       212 ~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~a  291 (466)
                      .-.+|+.||+++|.++.++.+-|-+++..++.++.+.||.|++......+...    .++...-.+.++..+|.++++..
T Consensus       141 HldlE~~iakF~G~E~aivYs~gF~ti~S~ipafsKrGDIi~~de~~nfaIq~----GlqlSRS~i~~Fkhndm~~lerl  216 (467)
T KOG1358|consen  141 HLDLEKRIAKFMGTEDAIVYSYGFSTIESAIPAFSKRGDIIFVDEAVNFAIQK----GLQLSRSTISYFKHNDMEDLERL  216 (467)
T ss_pred             ecccHHHHHHhhCCcceeeeccccchhhhcchhhhccCcEEEEehhhhHHHHH----HHhhhhheeEEecCCCHHHHHHh
Confidence            34689999999999999999999999999999999999999998777665432    23334456777888899999887


Q ss_pred             hcCCC------------ceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc----------ccccCCc
Q 012296          292 LNNNN------------VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK----------ALSLGAD  349 (466)
Q Consensus       292 i~~~~------------tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~----------~l~~gaD  349 (466)
                      +.+..            -+-|++|...-++|.+.|+.+|.++..++...+|+|+++..+....          ......|
T Consensus       217 l~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iD  296 (467)
T KOG1358|consen  217 LPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDID  296 (467)
T ss_pred             ccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCcccee
Confidence            65431            3578888888889999999999999999999999999976554321          0112368


Q ss_pred             EEEECCccccCccccceeEEEEeCHHH--HHHHHHHHHHhCCCchHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHH
Q 012296          350 LVLHSATKFIGGHNDVLAGSISGSGKL--VTQIRNLHHVLGGALNPNAAYLIIRG---MKTLHLRVQQQNSTALRMAKIL  424 (466)
Q Consensus       350 ivv~S~sK~lgg~gdv~gG~ivg~~el--i~~l~~~~~~~G~~lsp~~a~l~l~~---L~tl~~R~~~~~~na~~La~~L  424 (466)
                      +++.|+.-.++..    ||+.+|+.-+  .+++......+...+.|..+-.+...   +++-..+++........+-+.|
T Consensus       297 iv~~sm~~alas~----GgFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~~L~~k~~~~H~~l  372 (467)
T KOG1358|consen  297 IVTASMETALASG----GGFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFHAAL  372 (467)
T ss_pred             eeeeccccccccc----CceeecceeeEeeeeccccceeeeccCchhhhhhHHHHHHHHhhCcchhhhhhccccccchhh
Confidence            9999999998876    5888885432  24555555555666666654444333   3333444555555555566666


Q ss_pred             HcCCCe
Q 012296          425 EAHPKV  430 (466)
Q Consensus       425 ~~~p~V  430 (466)
                      +...+.
T Consensus       373 ~~~s~~  378 (467)
T KOG1358|consen  373 SSNSGF  378 (467)
T ss_pred             hcCCce
Confidence            655433

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=98.96  E-value=1.2e-08  Score=104.75  Aligned_cols=213  Identities=16%  Similarity=0.199  Sum_probs=140.9

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEe-CCHHHHHHH---HHHHH-ccCC----CEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          210 PTTVVVEEKMSALEGAESTVIM-ASGMSASTV---MLLAL-VPAG----GHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e~~l~~-sSGs~Ai~~---al~al-l~~G----d~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      ....+|+++|.++.|.+.+-+. .+|+++-.+   ++++. ...|    +.+|+++..|+.+..    .+...|.+|+.|
T Consensus       109 ~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPA----SAam~G~~VV~V  184 (496)
T COG1003         109 ELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPA----SAAMAGFKVVVV  184 (496)
T ss_pred             HHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChh----hHhhcCceEEEE
Confidence            3456789999999998876665 466654333   33333 2333    579999999988653    234568888888


Q ss_pred             CCC-----CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC--cccccccCCcEEEE
Q 012296          281 DPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL--NQKALSLGADLVLH  353 (466)
Q Consensus       281 d~~-----Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~--~~~~l~~gaDivv~  353 (466)
                      +.+     |+++|++++.++ +.++.+++|+.-.-.-.+|.+|+++.|++|..|..|++-...+  ..+|.+.|+|++-.
T Consensus       185 ~~~~~G~VDlddLk~k~~~~-~AalMiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV~Hl  263 (496)
T COG1003         185 KCDENGNVDLDDLRAKAEDN-LAALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDVVHL  263 (496)
T ss_pred             ecCCCCCccHHHHHHHhccc-eeEEEeccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccceEEe
Confidence            643     899999999875 9999999998432333579999999999999999999954332  36788899999999


Q ss_pred             CCccccCcccc---ceeEEEEeCHHHHHHHHH---------HH-------------HHhCCCc--hHHHHHHHHHhhHHH
Q 012296          354 SATKFIGGHND---VLAGSISGSGKLVTQIRN---------LH-------------HVLGGAL--NPNAAYLIIRGMKTL  406 (466)
Q Consensus       354 S~sK~lgg~gd---v~gG~ivg~~eli~~l~~---------~~-------------~~~G~~l--sp~~a~l~l~~L~tl  406 (466)
                      .+||+|+.|.+   -.+|-|..+.++..-+-.         +.             ..+|...  .-..+|+...|-+-|
T Consensus       264 NLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~mG~~GL  343 (496)
T COG1003         264 NLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMMGADGL  343 (496)
T ss_pred             ecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHHHHHHHHHhHHHH
Confidence            99999974432   123555555544432211         00             0111110  011233434444445


Q ss_pred             HHHHHHHHHHHHHHHHHHHcC
Q 012296          407 HLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       407 ~~R~~~~~~na~~La~~L~~~  427 (466)
                      ..--+...-|+.++++.|+.+
T Consensus       344 ~~ase~AvLNANYia~rL~~~  364 (496)
T COG1003         344 KQASEVAVLNANYIARRLKGY  364 (496)
T ss_pred             HHHHHHHHHhHHHHHHHhhhc
Confidence            544566677899999999864

>PRK08297 L-lysine aminotransferase; Provisional

Probab=98.96  E-value=6.7e-08  Score=102.72  Aligned_cols=212  Identities=12%  Similarity=0.110  Sum_probs=122.1

Q ss_pred             CCchhHHHHHHHHHhhh---CCCcEEEeCCHHHHHHHHHHHHcc--------CC------CEEEEcCCCCcchHHHHHhh
Q 012296          207 YGNPTTVVVEEKMSALE---GAESTVIMASGMSASTVMLLALVP--------AG------GHIVTTTDCYRKTRIFIETV  269 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~---g~e~~l~~sSGs~Ai~~al~all~--------~G------d~Vlv~~~~y~~t~~~~~~~  269 (466)
                      +.++...+|.++|+++.   +.+.+.+++||++|+..++.....        .|      .+||.....|++........
T Consensus        89 ~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~  168 (443)
T PRK08297         89 VYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSL  168 (443)
T ss_pred             cCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhh
Confidence            45677777888888876   236788899999999998875421        12      57999998888843221111


Q ss_pred             c--c---c--CC------ceEEEe--C--C-----------CCHHHHHHhhc--CCCceEEEEeCCCCCCcccc----cH
Q 012296          270 L--P---K--MG------ITATVI--D--P-----------ADMEGLEAALN--NNNVSLFFTESPTNPFLRCV----DV  315 (466)
Q Consensus       270 l--~---~--~G------i~v~~v--d--~-----------~Dle~Le~ai~--~~~tklV~lesP~NPtG~v~----dl  315 (466)
                      -  .   .  ..      +....+  +  .           .+++++++.+.  .+++.+|++|......|.+.    .+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl  248 (443)
T PRK08297        169 TNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFF  248 (443)
T ss_pred             cCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHH
Confidence            0  0   0  00      000001  0  0           12355566664  23589999998876667653    38


Q ss_pred             HHHHHHHHhcCCEEEEeCCCCCC-C-----cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHH-HH--HH
Q 012296          316 KLVSDLCHKKGAIVCIDGTFATP-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-LH--HV  386 (466)
Q Consensus       316 ~~Ia~la~~~gillIvDea~a~~-~-----~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~-~~--~~  386 (466)
                      ++|.++|++||+++|+||++.+. -     .........|+++  ++|.+.     ++|++.+++ +.+.+.. +.  ..
T Consensus       249 ~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~-----~~a~l~~~~-i~~~~~~~~~~~~~  320 (443)
T PRK08297        249 AAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVA--FGKKTQ-----VCGIMAGRR-VDEVEDNVFAVSSR  320 (443)
T ss_pred             HHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEE--eccccc-----ccceecchH-HHHhhhhhccCccc
Confidence            99999999999999999996532 1     1112233478887  689874     356666543 3222111 10  01


Q ss_pred             hCC--CchHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc
Q 012296          387 LGG--ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA  426 (466)
Q Consensus       387 ~G~--~lsp~~a~l~l~~L~tl~~--R~~~~~~na~~La~~L~~  426 (466)
                      .+.  ..+|..+.+++..++.+..  .+++..+..+.+.+.|++
T Consensus       321 ~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~  364 (443)
T PRK08297        321 INSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEE  364 (443)
T ss_pred             cCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            122  2356666655555554432  234444455555555543

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=98.93  E-value=5.7e-08  Score=103.64  Aligned_cols=154  Identities=14%  Similarity=0.088  Sum_probs=97.0

Q ss_pred             CCchhHHHHHHHHHh----hhC--CCcEEEeCCHHHHHHHHHHHHcc--------------------------CC---CE
Q 012296          207 YGNPTTVVVEEKMSA----LEG--AESTVIMASGMSASTVMLLALVP--------------------------AG---GH  251 (466)
Q Consensus       207 ~~np~~~~Lee~LA~----l~g--~e~~l~~sSGs~Ai~~al~all~--------------------------~G---d~  251 (466)
                      +.++...++.++|.+    +..  .+.+++.+||++|+..++.....                          +|   .+
T Consensus        98 ~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~  177 (464)
T TIGR00699        98 LGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLS  177 (464)
T ss_pred             CCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCE
Confidence            456666777777654    443  36788889999999998875421                          11   26


Q ss_pred             EEEcCCCCcchHHHHHhhc-----ccCCc---eEEEeC-------------C------CCHHHHHHhhcC--CCceEEEE
Q 012296          252 IVTTTDCYRKTRIFIETVL-----PKMGI---TATVID-------------P------ADMEGLEAALNN--NNVSLFFT  302 (466)
Q Consensus       252 Vlv~~~~y~~t~~~~~~~l-----~~~Gi---~v~~vd-------------~------~Dle~Le~ai~~--~~tklV~l  302 (466)
                      ||.....|++.........     ...+.   .+..++             .      .+++++++++++  .++.+|++
T Consensus       178 ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~  257 (464)
T TIGR00699       178 ILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIV  257 (464)
T ss_pred             EEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence            9999999988432211110     00011   001111             0      135667777752  24899999


Q ss_pred             eCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC----C--ccccccc--CCcEEEECCccccCcc
Q 012296          303 ESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP----L--NQKALSL--GADLVLHSATKFIGGH  362 (466)
Q Consensus       303 esP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~----~--~~~~l~~--gaDivv~S~sK~lgg~  362 (466)
                      |......|.+.+    +++|.++|++||+++|+||++.+.    -  .......  ..|+++  ++|.+++.
T Consensus       258 EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t--~gK~lg~g  327 (464)
T TIGR00699       258 EPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVT--FSKKFQTA  327 (464)
T ss_pred             eCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEE--ehhhhccC
Confidence            998877788876    999999999999999999996321    0  1111222  278866  68999643

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK12566 glycine dehydrogenase; Provisional

Probab=98.93  E-value=4.7e-08  Score=110.40  Aligned_cols=211  Identities=18%  Similarity=0.213  Sum_probs=142.9

Q ss_pred             HHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc-c--CCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHH
Q 012296          213 VVVEEKMSALEGAE--STVIMASGMSASTVMLLALV-P--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (466)
Q Consensus       213 ~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all-~--~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~  287 (466)
                      -+++..+++|.|.+  ++-+...++++-.+++++.. .  +..+|++++..|+.+...++..+...|++++.      ++
T Consensus       127 ~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~------~~  200 (954)
T PRK12566        127 LNFQQMTIDLTGLDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV------DA  200 (954)
T ss_pred             HHHHHHHHHHhCchhhhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE------cc
Confidence            34688999999986  55667777754444444432 2  24689999999999999998888889999875      34


Q ss_pred             HHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCC--CCCCCcccccccCCcEEEECCc-----cccC
Q 012296          288 LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT--FATPLNQKALSLGADLVLHSAT-----KFIG  360 (466)
Q Consensus       288 Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea--~a~~~~~~~l~~gaDivv~S~s-----K~lg  360 (466)
                      +++.++++ +..|++++|+ -.|.+.|+++|.+++|++|+++|+ .+  .+-.+...|.++|+||++.+..     =.||
T Consensus       201 ~~~~~~~~-~~~v~vq~P~-~~G~i~d~~~i~~~~h~~gal~~~-~~d~laL~ll~~Pge~GADI~vG~~Q~fGvp~~~G  277 (954)
T PRK12566        201 VDNLAAHA-VFGALLQYPD-THGEIRDLRPLIDQLHGQQALACV-AADLLSLLVLTPPGELGADVVLGSTQRFGVPMGYG  277 (954)
T ss_pred             hhhcCCCC-EEEEEEECCC-CceEEccHHHHHHHHHHcCCEEEE-EeCHHHHhCCCChhhcCCcEEeeCCCcCCCCCCCC
Confidence            44556554 8999999997 689999999999999999998664 33  2234567788999999998654     3456


Q ss_pred             ccccceeEEEEeCHHHHHHHHHH-------------------------HHH---hCCCch------HHHHHHHHHhhHHH
Q 012296          361 GHNDVLAGSISGSGKLVTQIRNL-------------------------HHV---LGGALN------PNAAYLIIRGMKTL  406 (466)
Q Consensus       361 g~gdv~gG~ivg~~eli~~l~~~-------------------------~~~---~G~~ls------p~~a~l~l~~L~tl  406 (466)
                      ||.   +|++.+++++..++-..                         ++.   ...+.+      ....|+...|-+-|
T Consensus       278 GP~---ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl  354 (954)
T PRK12566        278 GPH---AAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGL  354 (954)
T ss_pred             CCC---eeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHH
Confidence            664   78998888766554210                         000   000000      11234444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Q 012296          407 HLRVQQQNSTALRMAKILEAHPKVKRVHYP  436 (466)
Q Consensus       407 ~~R~~~~~~na~~La~~L~~~p~V~~V~yP  436 (466)
                      ..--++...++..+++.|.+ .+++.++-|
T Consensus       355 ~~ia~~~~~~a~~l~~~l~~-~g~~~~~~~  383 (954)
T PRK12566        355 KRIAQRVHRLTAILAAGLEA-KGIKRLNRH  383 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCccccCC
Confidence            44445567788899999988 566554444

>PLN02452 phosphoserine transaminase

Probab=98.91  E-value=4e-08  Score=101.88  Aligned_cols=205  Identities=11%  Similarity=0.016  Sum_probs=132.2

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEe-CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe---C-
Q 012296          210 PTTVVVEEKMSALEGAE---STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI---D-  281 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e---~~l~~-sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v---d-  281 (466)
                      ...+++++.|.++++.+   +++++ ++|+.++.+++..++.+||++++....+.+-+ +. +.++++|......   + 
T Consensus        52 ~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~~~~~~~l~~~~G~fg~r-~~-~~a~~~g~~~~~~~~~~~  129 (365)
T PLN02452         52 SIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLCKPGDKADFVVTGSWSKK-AA-KEAKKYCKTNVIASGKDE  129 (365)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcCCCCCeEEEEECCHHHHH-HH-HHHHHhCCCcEEEecCCC
Confidence            44567788888899863   35554 67789999999999999998887776666532 22 4455666543333   1 


Q ss_pred             ----CCCHHHHHHhhcCCCceEEEEeCCCCCCccc-ccHHHHHHHHHhcCCEEEEeCCCCCC-CcccccccCCcEEEECC
Q 012296          282 ----PADMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSA  355 (466)
Q Consensus       282 ----~~Dle~Le~ai~~~~tklV~lesP~NPtG~v-~dl~~Ia~la~~~gillIvDea~a~~-~~~~~l~~gaDivv~S~  355 (466)
                          ..++++++  .++ +.+.|++++-...+|.. .|++++.      ++++|+|.+...+ ...+..++|+|+  .|.
T Consensus       130 ~~~~~~~~~~~~--~~~-~~~~v~~~hnETstGv~~~~~~~i~------~~~lvVDa~Ss~g~~pidv~~~~v~~--~sa  198 (365)
T PLN02452        130 KYTKIPSVSEWE--LTP-DAKFVHICANETIHGVEFKDYPDVG------NVPLVADMSSNFLSKPVDVSKYGVIY--AGA  198 (365)
T ss_pred             CCCCCCChHHcC--CCC-CCcEEEECCCCCCCcEecCcccccC------CCeEEEECCccccCcccCHHHcCEEE--Eec
Confidence                12444442  123 36788876655677984 7777764      3899999996543 334455566544  699


Q ss_pred             ccccCccccceeEEEEeCHHHHHHHHHHHH-------Hh--C---CCchHHHHHHHHHhhHH------HHHHHHHHHHHH
Q 012296          356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VL--G---GALNPNAAYLIIRGMKT------LHLRVQQQNSTA  417 (466)
Q Consensus       356 sK~lgg~gdv~gG~ivg~~eli~~l~~~~~-------~~--G---~~lsp~~a~l~l~~L~t------l~~R~~~~~~na  417 (466)
                      +|.+|++|   .|+++.++++++++.....       ..  +   .+++....+.+...+++      ++.+.+++.+.+
T Consensus       199 qK~lGP~G---l~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a  275 (365)
T PLN02452        199 QKNVGPSG---VTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKA  275 (365)
T ss_pred             ccccCCCC---eEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            99998765   5888889888866532110       00  0   23333344444444443      445667788999


Q ss_pred             HHHHHHHHcCCCe
Q 012296          418 LRMAKILEAHPKV  430 (466)
Q Consensus       418 ~~La~~L~~~p~V  430 (466)
                      +.+.++|++.+++
T Consensus       276 ~~l~~~l~~~~G~  288 (365)
T PLN02452        276 DLLYDAIDESNGF  288 (365)
T ss_pred             HHHHHHHHhCCCc
Confidence            9999999987654

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.91  E-value=1.5e-07  Score=96.16  Aligned_cols=213  Identities=19%  Similarity=0.205  Sum_probs=139.8

Q ss_pred             HHHHHHHHHhhh---CCCcEEEeCCHHHHHHHHHHHHccCC--C------EEEEcCCCCcc-hHHHHHh-hcccCCc---
Q 012296          212 TVVVEEKMSALE---GAESTVIMASGMSASTVMLLALVPAG--G------HIVTTTDCYRK-TRIFIET-VLPKMGI---  275 (466)
Q Consensus       212 ~~~Lee~LA~l~---g~e~~l~~sSGs~Ai~~al~all~~G--d------~Vlv~~~~y~~-t~~~~~~-~l~~~Gi---  275 (466)
                      ...+++.|.+..   ..+.+.+..||++|+..+|....+..  +      .+|....+|++ +...+.. .-..+++   
T Consensus       100 av~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~  179 (433)
T KOG1401|consen  100 AVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFD  179 (433)
T ss_pred             HHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCC
Confidence            566788888877   45789999999999999987554321  1      48988988887 3322221 1122232   


Q ss_pred             ----eEEEeCCCCHHHHHHhhcCCC--ceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC------C
Q 012296          276 ----TATVIDPADMEGLEAALNNNN--VSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------L  339 (466)
Q Consensus       276 ----~v~~vd~~Dle~Le~ai~~~~--tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~------~  339 (466)
                          .+......|..++++.++.++  +.+|++|....-.|.+..    +..|.++|+++|+++|.||++.+.      .
T Consensus       180 p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~  259 (433)
T KOG1401|consen  180 PIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGW  259 (433)
T ss_pred             CCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHH
Confidence                233344568999999987653  789999998866666542    678999999999999999997641      1


Q ss_pred             cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH-HhCCC--chHHHHHHHHHhhHHHH--HHHHHHH
Q 012296          340 NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGGA--LNPNAAYLIIRGMKTLH--LRVQQQN  414 (466)
Q Consensus       340 ~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~-~~G~~--lsp~~a~l~l~~L~tl~--~R~~~~~  414 (466)
                      .+..+..-.||.+  +.|.++|+  +..|+..+++++.+.+..-.. ..|++  -+|+.+..+...|+++.  ..+++..
T Consensus       260 a~e~~~~~PDI~t--~aK~L~gG--lPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs  335 (433)
T KOG1401|consen  260 AQEYFGVTPDITT--VAKPLGGG--LPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVS  335 (433)
T ss_pred             HHHHhCcCCccee--ehhhccCC--ceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHH
Confidence            1233333457766  78999987  578999999999888753222 12322  25777777777776652  2333333


Q ss_pred             H----HHHHHHHHHHcCC
Q 012296          415 S----TALRMAKILEAHP  428 (466)
Q Consensus       415 ~----na~~La~~L~~~p  428 (466)
                      +    .++.+.+++.+.+
T Consensus       336 ~~~k~L~~~l~e~~~~~~  353 (433)
T KOG1401|consen  336 KIGKELRKLLDEYLKKTP  353 (433)
T ss_pred             HHHHHHHHHHHHHhccCC
Confidence            3    3444445554443

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=98.80  E-value=1e-06  Score=89.84  Aligned_cols=212  Identities=17%  Similarity=0.141  Sum_probs=131.4

Q ss_pred             hHHHHHHHHHhh-hCCC---------cEEEeCCHHHHHHHHHHHH--ccCCCEEEEcCCCCcchHHHHHhhcccCCceEE
Q 012296          211 TTVVVEEKMSAL-EGAE---------STVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (466)
Q Consensus       211 ~~~~Lee~LA~l-~g~e---------~~l~~sSGs~Ai~~al~al--l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~  278 (466)
                      ....+.+.++++ +|.+         ..+-..+|+.|+..+..-+  ..+...|.+++|+|+.....    +...|+++.
T Consensus        70 G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~I----f~~aGl~v~  145 (396)
T COG1448          70 GLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAI----FEAAGLEVE  145 (396)
T ss_pred             CcHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHH----HHhcCCcee
Confidence            345666677765 4532         2344568888887766544  34556799999999986644    445677775


Q ss_pred             EeC---C----CCHHHHHHhhcCCC-ceEEEE-eCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCC---CCcccc
Q 012296          279 VID---P----ADMEGLEAALNNNN-VSLFFT-ESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFAT---PLNQKA  343 (466)
Q Consensus       279 ~vd---~----~Dle~Le~ai~~~~-tklV~l-esP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~---~~~~~~  343 (466)
                      ..+   .    .|.+.+.+.|+.-+ ..+|++ .-.|||||.-..   .++|+++.+++|.+-++|-+|-+   ++..+.
T Consensus       146 ~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa  225 (396)
T COG1448         146 TYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDA  225 (396)
T ss_pred             eeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHH
Confidence            543   2    36677666665321 234444 445899998764   57899999999999999999643   433221


Q ss_pred             c------ccCC-cEEEECCccccCccccceeEEEEe--CHHHHHH----HHHHHHHhCCCchHHHHHHHHH---------
Q 012296          344 L------SLGA-DLVLHSATKFIGGHNDVLAGSISG--SGKLVTQ----IRNLHHVLGGALNPNAAYLIIR---------  401 (466)
Q Consensus       344 l------~~ga-Divv~S~sK~lgg~gdv~gG~ivg--~~eli~~----l~~~~~~~G~~lsp~~a~l~l~---------  401 (466)
                      .      ..+. -+|+.|+||.|+.-|.+.|++.+.  +.+...+    +....+..-.+++...+.+...         
T Consensus       226 ~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra  305 (396)
T COG1448         226 YALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRA  305 (396)
T ss_pred             HHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHH
Confidence            1      1222 478899999999999887776543  3444433    3333333223333333322211         


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHc
Q 012296          402 -GMKTLHLRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       402 -~L~tl~~R~~~~~~na~~La~~L~~  426 (466)
                       -.+.+...++++.+.++.+.+.|++
T Consensus       306 ~W~~El~~Mr~Ri~~mR~~lv~~L~~  331 (396)
T COG1448         306 EWEQELEEMRQRILEMRQALVDALKA  331 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             1233445556677778888888887

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=98.78  E-value=4.3e-07  Score=93.93  Aligned_cols=203  Identities=12%  Similarity=0.038  Sum_probs=126.0

Q ss_pred             hHHHHHHHHHhhhCCC---cEEEeC-CHHHHHHHHHHHHccCCCEEE-EcCCCCcchHHHHHhhcccCCceEEEeC----
Q 012296          211 TTVVVEEKMSALEGAE---STVIMA-SGMSASTVMLLALVPAGGHIV-TTTDCYRKTRIFIETVLPKMGITATVID----  281 (466)
Q Consensus       211 ~~~~Lee~LA~l~g~e---~~l~~s-SGs~Ai~~al~all~~Gd~Vl-v~~~~y~~t~~~~~~~l~~~Gi~v~~vd----  281 (466)
                      ..+++++.|.++++.+   +++++. +|+.++.++...++.+||+++ +....+.+.. +. ..++++| .+..+.    
T Consensus        50 i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll~~g~~~~~~~~tG~fg~r-~~-~ea~~~g-~v~~~~~~~~  126 (364)
T PRK12462         50 LLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFSRPGAAAPEYVTTGYWSRK-AI-GEASRVA-AMRVVWDGAA  126 (364)
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcCCCCCcEEEEEeCCHHHHH-HH-HHHHhcC-CceEecCcCC
Confidence            3456688888888862   355554 577999999999999999654 4444444422 23 3455555 343332    


Q ss_pred             -----CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC-CcccccccCCcEEEECC
Q 012296          282 -----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSA  355 (466)
Q Consensus       282 -----~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~-~~~~~l~~gaDivv~S~  355 (466)
                           ..+++++  .+++ +.+.|++++-...+|...+     ++.+.+++++|+|.+-..+ ...+..++  |+++.+.
T Consensus       127 ~~~~~~p~~~~~--~~~~-d~~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid~~~~--dvi~ags  196 (364)
T PRK12462        127 SGYRTLPSLAEL--DWDA-RAPFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFDVEAY--GMVYAHA  196 (364)
T ss_pred             CCCCcCCCHHHh--ccCC-CCcEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCChHHc--cEEEeec
Confidence                 1134443  2233 2677777555556788875     3333468999999984432 22333344  9999999


Q ss_pred             ccccCccccceeEEEEeCHHHHHHHHHHHH------------HhCCCchHHHHHHHHHhhHHH-------HHHHHHHHHH
Q 012296          356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHH------------VLGGALNPNAAYLIIRGMKTL-------HLRVQQQNST  416 (466)
Q Consensus       356 sK~lgg~gdv~gG~ivg~~eli~~l~~~~~------------~~G~~lsp~~a~l~l~~L~tl-------~~R~~~~~~n  416 (466)
                      .|.+|++|   .++++.+++++++......            ..-.+++.+..|++...++++       +.+.+++.+.
T Consensus       197 QKnlgP~G---ltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~k  273 (364)
T PRK12462        197 QKNLGPAG---VTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARK  273 (364)
T ss_pred             cccCCCCc---eEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            99999665   5788888888766543110            011233334445444444443       4456778889


Q ss_pred             HHHHHHHHHcCCC
Q 012296          417 ALRMAKILEAHPK  429 (466)
Q Consensus       417 a~~La~~L~~~p~  429 (466)
                      ++.+.+++++.++
T Consensus       274 a~~ly~~id~~~~  286 (364)
T PRK12462        274 AAMLYATLDALNE  286 (364)
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999998863

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=98.72  E-value=4.9e-06  Score=85.18  Aligned_cols=199  Identities=14%  Similarity=0.124  Sum_probs=109.2

Q ss_pred             hhHHHHHHHHHhhhCC--CcEEEeCCHH-HHHHHHHH-HH----cc--------CCCEEEEcCCCCcchHHHHHhhcccC
Q 012296          210 PTTVVVEEKMSALEGA--ESTVIMASGM-SASTVMLL-AL----VP--------AGGHIVTTTDCYRKTRIFIETVLPKM  273 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~--e~~l~~sSGs-~Ai~~al~-al----l~--------~Gd~Vlv~~~~y~~t~~~~~~~l~~~  273 (466)
                      ....++++.+|+++|.  ++.++..|.+ +-+.-++. ++    ..        ..-+.|++.|.|....    .+.+.+
T Consensus        69 ~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHF----ai~E~~  144 (425)
T PF12897_consen   69 DGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHF----AITEHF  144 (425)
T ss_dssp             S--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHH----HHHHHC
T ss_pred             CChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHH----HHHHhh
Confidence            4467899999999998  4566655555 33333222 21    11        1236899999998654    345678


Q ss_pred             CceEEEeC----CCCHHHHHHhhc-CCCceEEEEeCC--CCCCcccccHHHHHHHHH----hcCCEEEEeCCCCCCCcc-
Q 012296          274 GITATVID----PADMEGLEAALN-NNNVSLFFTESP--TNPFLRCVDVKLVSDLCH----KKGAIVCIDGTFATPLNQ-  341 (466)
Q Consensus       274 Gi~v~~vd----~~Dle~Le~ai~-~~~tklV~lesP--~NPtG~v~dl~~Ia~la~----~~gillIvDea~a~~~~~-  341 (466)
                      |++...|+    ..|+|.+++.+. +..+|.||+ -|  +||+|.++.-+.+.++|.    ..+..++.|++|+..... 
T Consensus       145 Giemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWc-VP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~  223 (425)
T PF12897_consen  145 GIEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWC-VPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYD  223 (425)
T ss_dssp             T-EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE--SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSS
T ss_pred             CcEEEecCCCCCCCCHHHHHHHHhcCCccceEEe-CCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccc
Confidence            99888775    348999999984 334899997 44  599999998776666663    578999999998764331 


Q ss_pred             --------ccc----ccC---CcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHH---HHHHhh
Q 012296          342 --------KAL----SLG---ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAY---LIIRGM  403 (466)
Q Consensus       342 --------~~l----~~g---aDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~---l~l~~L  403 (466)
                              +.+    +.|   .-+++.|+||.--.++  ..+++.++++-++.+++..........-.+..   ..++..
T Consensus       224 ~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~Ga--Gva~~aaS~~Nl~~~~~~~~~~tIgpdKvNQLRHvrff~d~  301 (425)
T PF12897_consen  224 EEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGA--GVAFFAASEANLAWIKKHLSVQTIGPDKVNQLRHVRFFKDA  301 (425)
T ss_dssp             SSS------HHHHHHHTT-TTSEEEEEESTTTS-TTS--S-EEEEE-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHSH
T ss_pred             cccchhhhHHHHHHHHcCCCCeEEEEecccccccCCc--ceeeeecCHHHHHHHHHHhcCceeCccHHHHHHHHHHhcCh
Confidence                    111    112   2378889999744333  25888889888877776655544433333332   223333


Q ss_pred             H-HHHHHHHHHHH
Q 012296          404 K-TLHLRVQQQNS  415 (466)
Q Consensus       404 ~-tl~~R~~~~~~  415 (466)
                      + .+...|++|.+
T Consensus       302 ~gGv~aHM~kHa~  314 (425)
T PF12897_consen  302 EGGVRAHMRKHAA  314 (425)
T ss_dssp             HTHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHH
Confidence            3 44455655543

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.68  E-value=5.8e-07  Score=90.76  Aligned_cols=222  Identities=18%  Similarity=0.154  Sum_probs=139.3

Q ss_pred             CCccccCC--CchhHHHHHHHHH----hhhCCC---cEE--EeCCHHHHHHHHHHHHccCCCEEEEcCCCCcch--HHHH
Q 012296          200 ASFEYGRY--GNPTTVVVEEKMS----ALEGAE---STV--IMASGMSASTVMLLALVPAGGHIVTTTDCYRKT--RIFI  266 (466)
Q Consensus       200 ~~~~Y~R~--~np~~~~Lee~LA----~l~g~e---~~l--~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t--~~~~  266 (466)
                      .||.-.||  +|...+++|-..-    +.++.+   +.+  -.-||+.|+..+..++++|+|+|.--+.-.++.  +.+.
T Consensus        70 EGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~  149 (477)
T KOG2467|consen   70 EGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQ  149 (477)
T ss_pred             cCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccc
Confidence            34444444  6787777654433    345542   333  345999999999999999999988655444441  1111


Q ss_pred             HhhcccCCceEEEe-------C----CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCC
Q 012296          267 ETVLPKMGITATVI-------D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF  335 (466)
Q Consensus       267 ~~~l~~~Gi~v~~v-------d----~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~  335 (466)
                      .. -++.-..-.|+       |    ..|.|.||+.-...++|+|+.-...  .-+..|..++.++|.+.|++|+.|-++
T Consensus       150 T~-~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iiaG~Sa--Y~R~~DYaR~R~Iad~~gA~Lm~DMAH  226 (477)
T KOG2467|consen  150 TP-TKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIAGTSA--YSRLIDYARFRKIADKVGAYLMADMAH  226 (477)
T ss_pred             cC-CceeeeeeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEecccc--chhhccHHHHHHHHHhcCceeehhhhh
Confidence            01 01111111111       2    1378888887666668988874433  457789999999999999999999985


Q ss_pred             CC-----CCcccccccCCcEEEECCccccCccccceeEEEEeCHH---------------HHHHHHHH--HHHhCCCchH
Q 012296          336 AT-----PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------------LVTQIRNL--HHVLGGALNP  393 (466)
Q Consensus       336 a~-----~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~e---------------li~~l~~~--~~~~G~~lsp  393 (466)
                      -+     +...+|+++ +|||..+.||.|-|+   +||+|.-++.               +-+++...  -...|+.-+-
T Consensus       227 ISgLVAA~vipsPFey-~DiVTTTTHKsLRGP---Rg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNh  302 (477)
T KOG2467|consen  227 ISGLVAAGVIPSPFEY-CDIVTTTTHKSLRGP---RGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNH  302 (477)
T ss_pred             HHHHHhcccCCCcccc-cceeeccccccccCC---cceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcc
Confidence            43     445677887 999999999999999   5888874431               22333221  1122332221


Q ss_pred             HHHH--HHHHh--hHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012296          394 NAAY--LIIRG--MKTLHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       394 ~~a~--l~l~~--L~tl~~R~~~~~~na~~La~~L~~~p  428 (466)
                      ..+.  .++..  -..+....++..+|++.+++.|.++.
T Consensus       303 tIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~G  341 (477)
T KOG2467|consen  303 TIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISRG  341 (477)
T ss_pred             hHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            1111  12222  23456667788999999999998763

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=98.67  E-value=1.5e-06  Score=88.47  Aligned_cols=214  Identities=14%  Similarity=0.199  Sum_probs=130.5

Q ss_pred             hhHHHHHHHHHhhh----CC---CcEEEeCCHH-HHHHHHHHHHc-cCCCEEEEcCCCCcchHHHHHhhcccCC-ceEEE
Q 012296          210 PTTVVVEEKMSALE----GA---ESTVIMASGM-SASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMG-ITATV  279 (466)
Q Consensus       210 p~~~~Lee~LA~l~----g~---e~~l~~sSGs-~Ai~~al~all-~~Gd~Vlv~~~~y~~t~~~~~~~l~~~G-i~v~~  279 (466)
                      ..++-+|+.+|++.    |.   .+.+++|+|. .|+..++..++ .+.+-|+++-|-|+-+-..+.    .+| ..+.|
T Consensus       113 qGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAti~----l~~~~~v~Y  188 (475)
T KOG0258|consen  113 QGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSATIS----LLGGTQVPY  188 (475)
T ss_pred             cCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHHHH----HhCCcccce
Confidence            34555666666654    32   2456667776 78888777665 567889999999986433322    222 22222


Q ss_pred             -eC-----CCCHHHHHHhhcC----CCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCccc----
Q 012296          280 -ID-----PADMEGLEAALNN----NNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQK----  342 (466)
Q Consensus       280 -vd-----~~Dle~Le~ai~~----~~tklV~lesP~NPtG~v~---dl~~Ia~la~~~gillIvDea~a~~~~~~----  342 (466)
                       .|     ..|.++|++.+++    -+++++++-||.||||.+.   .+++|.++|+++|++|+.||+|-..+...    
T Consensus       189 yLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skF  268 (475)
T KOG0258|consen  189 YLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKF  268 (475)
T ss_pred             eeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcch
Confidence             22     2377777776643    2477777789999999997   58899999999999999999964332211    


Q ss_pred             -----c-cccC---C----cEEEECCccccCccccceeEEEEe---CHHHHHHHHHHHHH------hCC-----Cc----
Q 012296          343 -----A-LSLG---A----DLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRNLHHV------LGG-----AL----  391 (466)
Q Consensus       343 -----~-l~~g---a----Divv~S~sK~lgg~gdv~gG~ivg---~~eli~~l~~~~~~------~G~-----~l----  391 (466)
                           . ..+|   .    -+.++|.||.+.|--.-+||+.=.   .++..+.+.+....      .|.     ..    
T Consensus       269 hSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~  348 (475)
T KOG0258|consen  269 HSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLVVNPPK  348 (475)
T ss_pred             HhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhhceecCCCC
Confidence                 0 1111   2    256789999988766567887631   34555444433221      110     00    


Q ss_pred             ---hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 012296          392 ---NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKR  432 (466)
Q Consensus       392 ---sp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~  432 (466)
                         .....+..     .-..-++...+.++.+.+.++..++|..
T Consensus       349 Pgd~Sy~~~~~-----Ekd~il~~l~~ra~l~~~~~ns~~gi~c  387 (475)
T KOG0258|consen  349 PGDPSYDLFSS-----EKDGILSSLRSRAKLTEDAFNSLEGISC  387 (475)
T ss_pred             CCCcchhhhhh-----hhHhHHHHHHHHhHHHHHHHhhcCceee
Confidence               11122211     1122345556778888889998887763

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=98.42  E-value=6e-06  Score=85.88  Aligned_cols=220  Identities=17%  Similarity=0.162  Sum_probs=137.1

Q ss_pred             hhHHHHH----HHHHhhhCCCc---EEEeCCHHHHHHHHHHHH---ccC--C---CEEEEcCCCCcchHHHHHhhcccCC
Q 012296          210 PTTVVVE----EKMSALEGAES---TVIMASGMSASTVMLLAL---VPA--G---GHIVTTTDCYRKTRIFIETVLPKMG  274 (466)
Q Consensus       210 p~~~~Le----e~LA~l~g~e~---~l~~sSGs~Ai~~al~al---l~~--G---d~Vlv~~~~y~~t~~~~~~~l~~~G  274 (466)
                      |..+.++    ..++.++++..   ...+++|++++.++-...   ...  |   ..++++...+.+    ++.....++
T Consensus       116 p~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a----~eK~a~yf~  191 (491)
T KOG1383|consen  116 PVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAA----FEKAARYFE  191 (491)
T ss_pred             chhHHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHH----HHHHHhhEE
Confidence            4555444    44666777632   223455567744444322   111  2   235554444433    334455566


Q ss_pred             ceEEEeCCC------CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHh-cCCEEEEeCCCCCCCc----ccc
Q 012296          275 ITATVIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCIDGTFATPLN----QKA  343 (466)
Q Consensus       275 i~v~~vd~~------Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~-~gillIvDea~a~~~~----~~~  343 (466)
                      ++++.++..      |+..+.+.++++ |.+|+.+.|+-|+|.+.|+++|.++.-+ +++.+++|.+-+.++.    ...
T Consensus       192 v~l~~V~~~~~~~~~D~~k~~~~i~eN-ti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~  270 (491)
T KOG1383|consen  192 VELREVPLDEGDYRVDPGKVVRMIDEN-TIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNE  270 (491)
T ss_pred             EEEEeeeccccceEecHHHHHHHhccc-eEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCc
Confidence            666666532      799999999986 9999999999999999999999999999 9999999999665433    111


Q ss_pred             --ccc---CCcEEEECCccccCccccceeEEEE-eCHHHH-HHHHHHHHHhCCC------------chHHHHHHHH--Hh
Q 012296          344 --LSL---GADLVLHSATKFIGGHNDVLAGSIS-GSGKLV-TQIRNLHHVLGGA------------LNPNAAYLII--RG  402 (466)
Q Consensus       344 --l~~---gaDivv~S~sK~lgg~gdv~gG~iv-g~~eli-~~l~~~~~~~G~~------------lsp~~a~l~l--~~  402 (466)
                        .++   |..-+..+.|||--.+.  ..|+++ .++++. +++.......|+.            .....+|..+  .|
T Consensus       271 ~~fdFr~p~V~Sisa~~HKYGl~~~--G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG  348 (491)
T KOG1383|consen  271 EEFDFRVPGVTSISADGHKYGLAPA--GSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLG  348 (491)
T ss_pred             cccccCCCCceeEeeccceeeeeec--CcEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhh
Confidence              222   23345667899844433  134544 445443 2332222222321            1123566554  35


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Q 012296          403 MKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYP  436 (466)
Q Consensus       403 L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yP  436 (466)
                      .+-+...+++..++++.|.+.+++.+++.-+.-|
T Consensus       349 ~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp  382 (491)
T KOG1383|consen  349 EEGYRENTQNIVETARKLREGIENIKGIKIVGKP  382 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccceecCCC
Confidence            5667888999999999999999998776544445

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.35  E-value=1.4e-05  Score=82.40  Aligned_cols=153  Identities=16%  Similarity=0.189  Sum_probs=98.3

Q ss_pred             CcEEEeCCHH-HHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC--------CCHHHHHHhhcC
Q 012296          226 ESTVIMASGM-SASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--------ADMEGLEAALNN  294 (466)
Q Consensus       226 e~~l~~sSGs-~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--------~Dle~Le~ai~~  294 (466)
                      ..+++++-.+ ..+.+.+.++.  ..++.|+.+.-.+.+.+..+    ...|+++..++.        .|.+.+++.+++
T Consensus        75 ~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai----~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~  150 (389)
T PF05889_consen   75 KSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAI----ERAGLEPVVVENVLEGDELITDLEAIEAKIEE  150 (389)
T ss_dssp             CEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHH----HHTT-EEEEE-EEEETTEEEEHHHHHHHHHHH
T ss_pred             cceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHH----HhcCCeEEEeeccCCCCeeeccHHHHHHHHHH
Confidence            4577775444 45666666664  56789999888887765433    345777666652        257777777753


Q ss_pred             C--CceEEEEeCCCCCCccccc-HHHHHHHHHhcCCEEEEeCCCCCCC------cccccccC-CcEEEECCccccCcccc
Q 012296          295 N--NVSLFFTESPTNPFLRCVD-VKLVSDLCHKKGAIVCIDGTFATPL------NQKALSLG-ADLVLHSATKFIGGHND  364 (466)
Q Consensus       295 ~--~tklV~lesP~NPtG~v~d-l~~Ia~la~~~gillIvDea~a~~~------~~~~l~~g-aDivv~S~sK~lgg~gd  364 (466)
                      .  ...+.++.+++-.-++..| +++|+++|+++|++.++-++|+--.      .+.....| .|+++.|+-|-|--|. 
T Consensus       151 ~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF~VPv-  229 (389)
T PF05889_consen  151 LGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNFMVPV-  229 (389)
T ss_dssp             HCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHHCEES-
T ss_pred             hCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceeeeecCCCEEecC-
Confidence            1  2578888888888888888 9999999999999999999998521      12223343 6999999999988774 


Q ss_pred             ceeEEEEe-CHHHHHHHHHHH
Q 012296          365 VLAGSISG-SGKLVTQIRNLH  384 (466)
Q Consensus       365 v~gG~ivg-~~eli~~l~~~~  384 (466)
                       .++.+.+ ++..+..+....
T Consensus       230 -Ggai~As~~~~~i~~vs~~Y  249 (389)
T PF05889_consen  230 -GGAIMASFDPSGILAVSKEY  249 (389)
T ss_dssp             -SHEEEEESSHHHHHHHHHTS
T ss_pred             -CCcEEEecCHHHHHHHHHHh
Confidence             2344444 356777666543

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=98.31  E-value=3.1e-05  Score=80.61  Aligned_cols=239  Identities=15%  Similarity=0.217  Sum_probs=145.2

Q ss_pred             HHHHHhcccCCccccCCCchhHHHHHHHH----HhhhCC-----------CcEEEeCCHHHHHHHHHHHHc-------cC
Q 012296          191 LIDFKEKRRASFEYGRYGNPTTVVVEEKM----SALEGA-----------ESTVIMASGMSASTVMLLALV-------PA  248 (466)
Q Consensus       191 ~~~~~~~~~~~~~Y~R~~np~~~~Lee~L----A~l~g~-----------e~~l~~sSGs~Ai~~al~all-------~~  248 (466)
                      +.++..+..+..++++..+|...+||-.+    +++.+.           .-.++..+.+++...++.+..       +.
T Consensus        90 ladmLs~~i~~vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~  169 (511)
T KOG0628|consen   90 LADMLSGGIGCVGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKS  169 (511)
T ss_pred             HHHHHhcccccccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhc
Confidence            44566666666778888999999998544    444332           347888888877666665431       22


Q ss_pred             C-----------CEE-EEcCCCCcchHHHHHhhcccCCceEEEeCCC-----CHHHHHHhhcCC----CceEEEEeCCCC
Q 012296          249 G-----------GHI-VTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNN----NVSLFFTESPTN  307 (466)
Q Consensus       249 G-----------d~V-lv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----Dle~Le~ai~~~----~tklV~lesP~N  307 (466)
                      +           +-| -.++..|.+...    .....+++.+.+..+     +.+.|+++|.++    -+-.+++-+.. 
T Consensus       170 ~~p~~~e~~~~~~lV~Y~SDqahssvek----a~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~G-  244 (511)
T KOG0628|consen  170 RPPELHESSVLARLVAYCSDQAHSSVEK----ACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLG-  244 (511)
T ss_pred             CCCcccchhhhhhheEEecCcccchHHH----hHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeec-
Confidence            2           123 344555555432    222335666665433     567777777543    13344443333 


Q ss_pred             CCccc--ccHHHHHHHHHhcCCEEEEeCCCCCCCccc----ccccC---CcEEEECCccccCccccceeEEE--------
Q 012296          308 PFLRC--VDVKLVSDLCHKKGAIVCIDGTFATPLNQK----ALSLG---ADLVLHSATKFIGGHNDVLAGSI--------  370 (466)
Q Consensus       308 PtG~v--~dl~~Ia~la~~~gillIvDea~a~~~~~~----~l~~g---aDivv~S~sK~lgg~gdv~gG~i--------  370 (466)
                      .|+.+  -++++|..+|+++|++|+||.+|++....-    .+-.|   +|-+-...|||+-.+-|.-.=|+        
T Consensus       245 TT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~  324 (511)
T KOG0628|consen  245 TTSSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSR  324 (511)
T ss_pred             CccccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeee
Confidence            34555  379999999999999999999998654321    12223   56777788998876655422222        


Q ss_pred             --EeCHHHHH-HH-------HHHHHHhCCCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe
Q 012296          371 --SGSGKLVT-QI-------RNLHHVLGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVH  434 (466)
Q Consensus       371 --vg~~eli~-~l-------~~~~~~~G~~lsp~~a~l~l~--~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~  434 (466)
                        -.++..++ ..       +.++-.+|-..-.+-.|..+|  |.+.++.+++++.+.++.+.+.+.+-+..+-+.
T Consensus       325 ~~~vdp~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~  400 (511)
T KOG0628|consen  325 AFNVDPLYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVN  400 (511)
T ss_pred             eeecChHhhcchhhccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeec
Confidence              12222221 11       112222333344556676665  678899999999999999999888877765444

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=98.08  E-value=7.5e-05  Score=77.09  Aligned_cols=208  Identities=14%  Similarity=0.132  Sum_probs=127.6

Q ss_pred             HHHHHhhhCC---CcEEEeCCHHHH-HHHHHHHHc-------cCC-----C-EEEEcCCCCcchHHHHHhhcccCC---c
Q 012296          216 EEKMSALEGA---ESTVIMASGMSA-STVMLLALV-------PAG-----G-HIVTTTDCYRKTRIFIETVLPKMG---I  275 (466)
Q Consensus       216 ee~LA~l~g~---e~~l~~sSGs~A-i~~al~all-------~~G-----d-~Vlv~~~~y~~t~~~~~~~l~~~G---i  275 (466)
                      -.++.++.|.   .+.++.++|+-+ +.++..+--       ..|     + .+.+++.+|.+....    ...+|   -
T Consensus       147 l~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~ka----Aa~lg~gtd  222 (510)
T KOG0629|consen  147 LAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKA----AAFLGLGTD  222 (510)
T ss_pred             HHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHH----HHHhccCCc
Confidence            3344445554   368888888843 333332211       112     2 244556666664432    23334   2


Q ss_pred             eEEEeCC-----CCHHHHHHhhcCCC-----ceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccccc-
Q 012296          276 TATVIDP-----ADMEGLEAALNNNN-----VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKAL-  344 (466)
Q Consensus       276 ~v~~vd~-----~Dle~Le~ai~~~~-----tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l-  344 (466)
                      .+..|+.     .++++||+.|-..+     +-+|-.+.-+...|..-||+.|+++|++|+.+++||++|++++..... 
T Consensus       223 ~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~  302 (510)
T KOG0629|consen  223 HCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKH  302 (510)
T ss_pred             eeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhh
Confidence            4444543     36888888875322     233333333456688889999999999999999999999986553221 


Q ss_pred             --c----cCCcEEEECCccccCccccceeEEEEeCH-HHHHHHHHHHH--------------H-------hCCCchHHHH
Q 012296          345 --S----LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHH--------------V-------LGGALNPNAA  396 (466)
Q Consensus       345 --~----~gaDivv~S~sK~lgg~gdv~gG~ivg~~-eli~~l~~~~~--------------~-------~G~~lsp~~a  396 (466)
                        .    ..+|-|..+.||++|.+-  .++.+..+. .++++......              .       .|--..-+--
T Consensus       303 R~kl~Giera~SvtwnpHK~~gapl--qCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKl  380 (510)
T KOG0629|consen  303 RHKLTGIERANSVTWNPHKLMGAPL--QCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKL  380 (510)
T ss_pred             HhhccCccccCceeecHHHhhcCcc--hhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHH
Confidence              1    136889999999999874  456555443 34444322110              1       1212344556


Q ss_pred             HHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012296          397 YLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPK  429 (466)
Q Consensus       397 ~l~l~--~L~tl~~R~~~~~~na~~La~~L~~~p~  429 (466)
                      |+..+  |.+-++.++++..++|+.+.+.|++.++
T Consensus       381 WlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~  415 (510)
T KOG0629|consen  381 WLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREG  415 (510)
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHHHhccc
Confidence            76654  5667888999999999999999998754

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=98.01  E-value=6.5e-05  Score=76.09  Aligned_cols=171  Identities=15%  Similarity=0.150  Sum_probs=88.7

Q ss_pred             hhHHHHHHHHHhhh---C-C---CcEEEeCCHH-HHHHHHHHHHccC--C----CEEEEcCCCCcchHHHHHhhcccCCc
Q 012296          210 PTTVVVEEKMSALE---G-A---ESTVIMASGM-SASTVMLLALVPA--G----GHIVTTTDCYRKTRIFIETVLPKMGI  275 (466)
Q Consensus       210 p~~~~Lee~LA~l~---g-~---e~~l~~sSGs-~Ai~~al~all~~--G----d~Vlv~~~~y~~t~~~~~~~l~~~Gi  275 (466)
                      -...+|++.|.+|.   | +   +.-|++++|+ +-+++++.+|...  .    -+|+...|.|+...... ..+.....
T Consensus        43 f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt-~~f~s~~y  121 (363)
T PF04864_consen   43 FISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQT-DFFDSRLY  121 (363)
T ss_dssp             TS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHC-CCT-BTTE
T ss_pred             eccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHH-HhccccCc
Confidence            33456777777765   3 2   4678888888 7888888887543  1    27999999888644322 33333222


Q ss_pred             eEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc-ccccCCcEEEEC
Q 012296          276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK-ALSLGADLVLHS  354 (466)
Q Consensus       276 ~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~-~l~~gaDivv~S  354 (466)
                      +.. -|..   .....-+. .+-+=++++||||.|.+-.  .   +++..+..+|.|-+|.-|.... +....-||++++
T Consensus       122 ~w~-Gda~---~~~~~~~~-~~~IElVTSPNNPDG~lr~--~---V~~g~~~k~I~D~AYYWPhyTpI~~~aD~DiMLFT  191 (363)
T PF04864_consen  122 KWA-GDAS---NFKNSDNP-SPYIELVTSPNNPDGQLRE--A---VLNGSSGKVIHDLAYYWPHYTPITAPADHDIMLFT  191 (363)
T ss_dssp             EEE-EECC---CGTT-S-C-CGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STTTS---S-B--SEEEEE
T ss_pred             ccc-ccHH---hhccCCCC-CCeEEEEeCCCCCcccccc--h---hcCCCCcceeeeeeeecccccccCCCCCCceEEEE
Confidence            222 1221   12111111 2556678899999998631  1   2344566789999976544321 122345899999


Q ss_pred             CccccCccccceeEEE-EeCHHHHHHHHHHHHHhCCCch
Q 012296          355 ATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALN  392 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~i-vg~~eli~~l~~~~~~~G~~ls  392 (466)
                      +||.=|-.| .+.||. +-++++.++|..+......+.+
T Consensus       192 ~SK~TGHAG-SR~GWAlVKD~~Va~kM~~y~~lnTiGvS  229 (363)
T PF04864_consen  192 LSKLTGHAG-SRFGWALVKDEEVAKKMTKYMELNTIGVS  229 (363)
T ss_dssp             HHHHCS-GG-G-EEEEEES-HHHHHHHHHHHHHHCSS--
T ss_pred             EecccCccc-cccceeeecCHHHHHHHHHHHHHhcccCc
Confidence            999866555 445655 5556777888776554433333

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=97.89  E-value=3.3e-05  Score=76.55  Aligned_cols=206  Identities=16%  Similarity=0.192  Sum_probs=119.7

Q ss_pred             HHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH---ccCCCEEEEcCCCCcchHHHHHhh----ccc-CCc-eEEEe--
Q 012296          212 TVVVEEKMSALEGAESTVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETV----LPK-MGI-TATVI--  280 (466)
Q Consensus       212 ~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al---l~~Gd~Vlv~~~~y~~t~~~~~~~----l~~-~Gi-~v~~v--  280 (466)
                      ++-.+...+.+-+..-++++.||++|+.++|+..   .+..|.| +-+..|++.....-.+    +.. -++ +.+++  
T Consensus        89 v~cA~~l~stlPeLsvc~F~NSGSEANDLALRLAR~ftkhqDvI-tldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHV  167 (452)
T KOG1403|consen   89 VQCARTLTSTLPELSVCFFVNSGSEANDLALRLARNFTKHQDVI-TLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHV  167 (452)
T ss_pred             HHHHHHHhhcCCCceEEEEecCCchhhHHHHHHHHhhcccCceE-EEechhccceeeeeeccceeccCCCCcCCCceeEe
Confidence            3334444445545567888999999999988743   3444544 4455666532111010    000 011 11222  


Q ss_pred             -C---------------CCC-----HHHHHHhhcC-----CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEE
Q 012296          281 -D---------------PAD-----MEGLEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVC  330 (466)
Q Consensus       281 -d---------------~~D-----le~Le~ai~~-----~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillI  330 (466)
                       +               ..|     .+.+++.+++     ..+.+.+.|+-..-.|.+.|    .+++++..+.+|-+.|
T Consensus       168 APcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~I  247 (452)
T KOG1403|consen  168 APCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCI  247 (452)
T ss_pred             cCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEE
Confidence             0               001     2344444432     13566677777777788876    6789999999999999


Q ss_pred             EeCCCCCC-------CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHH----HHHHhCCCchHHHHHHH
Q 012296          331 IDGTFATP-------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN----LHHVLGGALNPNAAYLI  399 (466)
Q Consensus       331 vDea~a~~-------~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~----~~~~~G~~lsp~~a~l~  399 (466)
                      .||++-++       +.......-.|||+  +.|-+|-+.  ..+.++..+++.+.+..    +-+.+|+  +|..+...
T Consensus       248 aDEVQvGFGRvG~hyWafq~y~fiPDIVt--mgKpmGNGh--PVa~VattkeIA~Af~atgv~YFNTyGG--nPVsCAv~  321 (452)
T KOG1403|consen  248 ADEVQVGFGRVGSHYWAFQTYNFIPDIVT--MGKPMGNGH--PVAAVATTKEIAQAFHATGVEYFNTYGG--NPVSCAVG  321 (452)
T ss_pred             eehhhhcccccchhhhhhhhhccccchhe--ecccCCCCC--eeeEEeccHHHHHHhccccceehhccCC--CchhHHHH
Confidence            99994321       11222334467776  778887543  46888899999888764    3345666  45666665


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHc
Q 012296          400 IRGMKTLHLRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       400 l~~L~tl~~R~~~~~~na~~La~~L~~  426 (466)
                      +.-|+.++  -+.++++++++.++|..
T Consensus       322 laVm~v~e--~E~Lq~ha~~vG~~L~~  346 (452)
T KOG1403|consen  322 LAVMRVCE--DENLQEHAQQVGEKLEV  346 (452)
T ss_pred             HHHHHHHh--hhhHHHHHHHHHHHHHH
Confidence            55555443  34556666666666653

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=97.86  E-value=5e-05  Score=81.65  Aligned_cols=137  Identities=20%  Similarity=0.359  Sum_probs=100.7

Q ss_pred             HHHHHhhhCC--CcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhh
Q 012296          216 EEKMSALEGA--ESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAAL  292 (466)
Q Consensus       216 ee~LA~l~g~--e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai  292 (466)
                      +..++++.|.  .++-++.-|++|-.++.++. ..++.++++...+|+.+...++...+.+|++++..+   +++...- 
T Consensus       169 QTmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~---~~~~~~s-  244 (1001)
T KOG2040|consen  169 QTMITDLTGLPMANASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSD---IKEADYS-  244 (1001)
T ss_pred             HHhhhhccCCcccchhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhccccccceeEEecC---HHHhhcc-
Confidence            5567777776  46677788886555544433 456778999999999999888877888888866543   4433322 


Q ss_pred             cCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCC-CCCCCcccccccCCcEEEECCccc
Q 012296          293 NNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT-FATPLNQKALSLGADLVLHSATKF  358 (466)
Q Consensus       293 ~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea-~a~~~~~~~l~~gaDivv~S~sK~  358 (466)
                      .+ .+..|++..|. --|.+.|.+++++.+++.|.++++-.- .+--+...|.++|+||++.|...+
T Consensus       245 ~~-~v~gvlvQYP~-t~G~i~d~~el~~~a~~~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQRF  309 (1001)
T KOG2040|consen  245 SK-DVSGVLVQYPD-TEGSVLDFDELVELAHANGSLVVMATDLLALTILRPPGEFGADIAVGSSQRF  309 (1001)
T ss_pred             cc-ceeEEEEEcCC-CCCcccCHHHHHHHhhccCceEEEeehhhHHHccCChhhcCceeeecccccc
Confidence            23 38899999997 469999999999999999988776432 222345677889999999998765

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=97.85  E-value=0.00021  Score=71.12  Aligned_cols=164  Identities=16%  Similarity=0.204  Sum_probs=116.6

Q ss_pred             HHHHHHHhhhCC-Cc-EEEeCCHHHHHHHHHHHHccCCC---EEEEcCCCCcchHHHHHhhcccCCceE----EEeCCC-
Q 012296          214 VVEEKMSALEGA-ES-TVIMASGMSASTVMLLALVPAGG---HIVTTTDCYRKTRIFIETVLPKMGITA----TVIDPA-  283 (466)
Q Consensus       214 ~Lee~LA~l~g~-e~-~l~~sSGs~Ai~~al~all~~Gd---~Vlv~~~~y~~t~~~~~~~l~~~Gi~v----~~vd~~-  283 (466)
                      -+-..++.+.|+ ++ +.++++=+.-+..++.++.+|-.   +|+...-.|++-+-.+...++..|+.+    +.+++. 
T Consensus       115 ~il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePRE  194 (465)
T KOG3846|consen  115 PILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPRE  194 (465)
T ss_pred             hhhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccc
Confidence            355677888888 33 34445555667777778877754   689999999886655555566666543    122211 


Q ss_pred             -----CHHHHHHhhcCC--CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC-CcccccccCCcEEEECC
Q 012296          284 -----DMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSA  355 (466)
Q Consensus       284 -----Dle~Le~ai~~~--~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~-~~~~~l~~gaDivv~S~  355 (466)
                           ..+++-+.|..+  ...+|++...+..||...|+.+|.+.-+..|+++-.|-+++.+ ++...-.+|+|+.+...
T Consensus       195 GEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCS  274 (465)
T KOG3846|consen  195 GEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCS  274 (465)
T ss_pred             cccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEee
Confidence                 245555555433  3789999999999999999999997777789999999987754 34455578999999999


Q ss_pred             ccccCccccceeEEEEeCHHHH
Q 012296          356 TKFIGGHNDVLAGSISGSGKLV  377 (466)
Q Consensus       356 sK~lgg~gdv~gG~ivg~~eli  377 (466)
                      .||++.+.+.+||+.+-.+...
T Consensus       275 YKYlnaGaGgIgGlFvHekh~~  296 (465)
T KOG3846|consen  275 YKYLNAGAGGIGGLFVHEKHTK  296 (465)
T ss_pred             ecccccCCCccceeeeehhhhc
Confidence            9999866666788888665433

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=97.80  E-value=0.0004  Score=74.91  Aligned_cols=218  Identities=19%  Similarity=0.178  Sum_probs=138.3

Q ss_pred             hHHHHHHHHHhhhCCCcEEEe-CCHHHH---HHHHHHHHc-cCCC----EEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          211 TTVVVEEKMSALEGAESTVIM-ASGMSA---STVMLLALV-PAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       211 ~~~~Lee~LA~l~g~e~~l~~-sSGs~A---i~~al~all-~~Gd----~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ....||+.|+++.|-+..-+. .||.++   =..++++.+ .+|+    ..+++...|+....    .+...|.++..|+
T Consensus       583 lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPA----SA~MagmkvvpV~  658 (1001)
T KOG2040|consen  583 LFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPA----SAAMAGMKVVPVG  658 (1001)
T ss_pred             HHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChh----hHHhcCCEEEEee
Confidence            345788899999888765554 567643   334455544 3443    46677777776542    2344577777775


Q ss_pred             CC-----CHHHHHHhhcCC--CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC--CcccccccCCcEEE
Q 012296          282 PA-----DMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP--LNQKALSLGADLVL  352 (466)
Q Consensus       282 ~~-----Dle~Le~ai~~~--~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~--~~~~~l~~gaDivv  352 (466)
                      ..     |..+|++..+++  +..++.+..|+.-.-....+++++++.|+||--+..|++-...  -..+|.++|+|+.-
T Consensus       659 ~~~~G~id~~dLk~kaekh~~~Laa~MvTYPST~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~GaDV~H  738 (1001)
T KOG2040|consen  659 CDANGNIDMVDLKAKAEKHKDNLAALMVTYPSTHGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIGADVCH  738 (1001)
T ss_pred             ccCCCCccHHHHHHHHHHhhhhhheeEEecccccccccccHHHHHHHHHhcCCEEEecCCCccceecccCCcccccccee
Confidence            32     677777766543  3678999889843333346999999999999999999994432  23678889999999


Q ss_pred             ECCccccCcccc---ceeEEEEeCHHHHHHHHHHHH------------------HhCC--CchHHHHHHHHHhhHHHHHH
Q 012296          353 HSATKFIGGHND---VLAGSISGSGKLVTQIRNLHH------------------VLGG--ALNPNAAYLIIRGMKTLHLR  409 (466)
Q Consensus       353 ~S~sK~lgg~gd---v~gG~ivg~~eli~~l~~~~~------------------~~G~--~lsp~~a~l~l~~L~tl~~R  409 (466)
                      -.+||+|+.|.+   -.+|-|..++.+..-+-..-.                  .+|.  .++--.+|+-+.|.+-|..-
T Consensus       739 LNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~a  818 (1001)
T KOG2040|consen  739 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGLKDA  818 (1001)
T ss_pred             ecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccccchh
Confidence            999999864321   123444444444332221100                  0111  11222456555565555555


Q ss_pred             HHHHHHHHHHHHHHHHcCCCeEE
Q 012296          410 VQQQNSTALRMAKILEAHPKVKR  432 (466)
Q Consensus       410 ~~~~~~na~~La~~L~~~p~V~~  432 (466)
                      -+...-|+.+++++|+.|-+|..
T Consensus       819 s~~AiLNaNYMakRLe~hYkil~  841 (1001)
T KOG2040|consen  819 SKIAILNANYMAKRLESHYKILF  841 (1001)
T ss_pred             hHHHhhhhHHHHHHHhhccceeE
Confidence            56667899999999999866543

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=97.71  E-value=0.0019  Score=65.87  Aligned_cols=225  Identities=20%  Similarity=0.196  Sum_probs=131.7

Q ss_pred             HHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccC-----CCEEEEcCCCCcchHH
Q 012296          190 ELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPA-----GGHIVTTTDCYRKTRI  264 (466)
Q Consensus       190 ~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~-----Gd~Vlv~~~~y~~t~~  264 (466)
                      ++.+++.+.+   .|+  ++-....|++.+.+.+|-+..+-+.-|-.|-+..+..++++     |.+.++..+.|..|.+
T Consensus        64 qwaamm~GDE---AYa--gsrs~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr  138 (471)
T COG3033          64 QWAAMMRGDE---AYA--GSRSYYALADAVKDIFGFQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTR  138 (471)
T ss_pred             HHHHHhccch---hhc--ccccHHHHHHHHHHhcCceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchh
Confidence            4445554432   355  45667789999999999887777777777766666666554     5566677777776544


Q ss_pred             HHHhhcccCCceEEE--eC-------------CCCHHHHHHhhcCC---CceEEEEeCCCCCC-cccc---cHHHHHHHH
Q 012296          265 FIETVLPKMGITATV--ID-------------PADMEGLEAALNNN---NVSLFFTESPTNPF-LRCV---DVKLVSDLC  322 (466)
Q Consensus       265 ~~~~~l~~~Gi~v~~--vd-------------~~Dle~Le~ai~~~---~tklV~lesP~NPt-G~v~---dl~~Ia~la  322 (466)
                      ....   ..|..++-  ++             ..|++.|++.|++-   ++..|++.-.+|.. |...   +++++.++|
T Consensus       139 ~h~~---~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia  215 (471)
T COG3033         139 GHIQ---INGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIA  215 (471)
T ss_pred             HHHH---hcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHH
Confidence            3221   22221111  11             12788999888742   35566665555543 4444   578999999


Q ss_pred             HhcCCEEEEeCC-CCCC-Cc--cc---------------ccccCCcEEEECCccccCccccceeEEEEeCHH----HHHH
Q 012296          323 HKKGAIVCIDGT-FATP-LN--QK---------------ALSLGADLVLHSATKFIGGHNDVLAGSISGSGK----LVTQ  379 (466)
Q Consensus       323 ~~~gillIvDea-~a~~-~~--~~---------------~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~e----li~~  379 (466)
                      ++|++.++.|.+ |+.. ++  ++               .+. -+|-.+.|.-|---..   +||+++.+++    +...
T Consensus       216 ~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~s-YaD~~~mS~KKD~lvn---mGGfl~~~D~~~fDvy~~  291 (471)
T COG3033         216 KKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYS-YADGCTMSAKKDGLVN---MGGFLCFKDDSFFDVYEE  291 (471)
T ss_pred             HHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHh-hhhhheeeccccceec---cccEEEecCccHHHHHHH
Confidence            999999999998 3321 11  11               011 2678888887753332   6899988765    5566


Q ss_pred             HHHHHH------HhCCCchHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHcC
Q 012296          380 IRNLHH------VLGGALNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       380 l~~~~~------~~G~~lsp~~a~l~l~~L~tl--~~R~~~~~~na~~La~~L~~~  427 (466)
                      ++...-      .+|+ +..-+...+..||+.-  ...++...+..++|++.|.+.
T Consensus       292 ~~~~~V~~eG~~tYGg-l~GrdmealAvGL~e~~~~~yl~~Rv~Qv~YL~~~l~~~  346 (471)
T COG3033         292 CRTLVVVQEGFPTYGG-LAGRDMEALAVGLREGVNFDYLAHRVAQVQYLADGLEEA  346 (471)
T ss_pred             HHhheEeeccccccCc-ccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc
Confidence            554332      2232 2222222222233321  112333334567888888875

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=97.58  E-value=0.0038  Score=62.54  Aligned_cols=146  Identities=17%  Similarity=0.177  Sum_probs=92.0

Q ss_pred             EEeCCHHHHHHHHHH---HHccCCCEEEEcCCCCcchHHHHHhhcccCCc----eEEEeCC----CCHHHHHHhhcCCCc
Q 012296          229 VIMASGMSASTVMLL---ALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI----TATVIDP----ADMEGLEAALNNNNV  297 (466)
Q Consensus       229 l~~sSGs~Ai~~al~---all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi----~v~~vd~----~Dle~Le~ai~~~~t  297 (466)
                      +-.-||+.|+.....   .++. ...|.++.|+|......+    ++.|.    ...+.|.    .|++.+...|+..+.
T Consensus       103 vQslsGTGAl~~~A~Fl~~~~~-~~~VY~SnPTW~nH~~if----~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe  177 (410)
T KOG1412|consen  103 VQSLSGTGALRIAADFLATFYN-KNTVYVSNPTWENHHAIF----EKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPE  177 (410)
T ss_pred             eeeccccchhhhhHHHHHHhcc-cceeEecCCchhHHHHHH----HHcCCceeeeeeeecCCCceecHHHHHHHHhhCCC
Confidence            444588877766543   2233 456999999998866444    34552    3344443    377777777764333


Q ss_pred             -eEEEEeCC-CCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcccc----------cccCC-cEEEECCccccCc
Q 012296          298 -SLFFTESP-TNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA----------LSLGA-DLVLHSATKFIGG  361 (466)
Q Consensus       298 -klV~lesP-~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~~----------l~~ga-Divv~S~sK~lgg  361 (466)
                       .++++... +||||.-.-   ..+|++..++++.+.+.|-+|-+....++          .+.|. -+|+.|+.|-+|.
T Consensus       178 ~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGl  257 (410)
T KOG1412|consen  178 GSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGL  257 (410)
T ss_pred             CcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhccc
Confidence             34444433 899997653   56788888999999999999654322221          12233 3788999999999


Q ss_pred             cccceeEE--EEeCHHHHHH
Q 012296          362 HNDVLAGS--ISGSGKLVTQ  379 (466)
Q Consensus       362 ~gdv~gG~--ivg~~eli~~  379 (466)
                      .+.+.|-+  ++-++..+..
T Consensus       258 YneRvGnltvv~~n~a~i~~  277 (410)
T KOG1412|consen  258 YNERVGNLTVVVNNPAVIAG  277 (410)
T ss_pred             ccccccceEEEecChhHHHH
Confidence            88876554  3334544433

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=97.42  E-value=0.0072  Score=61.36  Aligned_cols=252  Identities=15%  Similarity=0.163  Sum_probs=138.5

Q ss_pred             CCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhh-hCC------C-cEE--EeCCHHHH--HHHHHHHHccCC
Q 012296          182 AYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL-EGA------E-STV--IMASGMSA--STVMLLALVPAG  249 (466)
Q Consensus       182 t~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l-~g~------e-~~l--~~sSGs~A--i~~al~all~~G  249 (466)
                      .|+++.....+....+....-.|-..  ....++.+.-++| +|.      + ..+  -.-||+.|  +.+-+.+..-++
T Consensus        69 p~vL~~VrkAE~ql~~~~ldKEYlpI--~Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~  146 (427)
T KOG1411|consen   69 PYVLPSVRKAEQQLASLSLDKEYLPI--TGLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPS  146 (427)
T ss_pred             eeeeHHHHHHHHHHhhhcccchhccc--cchHHHHHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccc
Confidence            45566665555544343333455533  2334555555554 232      1 222  22466644  444455555678


Q ss_pred             CEEEEcCCCCcchHHHHHhhcccCCceEEEe---CC----CCHHHHHHhhcCCC-ceEEEE-eCCCCCCcccc---cHHH
Q 012296          250 GHIVTTTDCYRKTRIFIETVLPKMGITATVI---DP----ADMEGLEAALNNNN-VSLFFT-ESPTNPFLRCV---DVKL  317 (466)
Q Consensus       250 d~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v---d~----~Dle~Le~ai~~~~-tklV~l-esP~NPtG~v~---dl~~  317 (466)
                      ..|.+++|+|+...    .+.+..|+.+.++   +.    .|.+.+.+.+.... -..|++ .-.+||||.-.   ..++
T Consensus       147 ~~I~ip~PTWgNh~----~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~k  222 (427)
T KOG1411|consen  147 RDIYIPDPTWGNHK----NIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEK  222 (427)
T ss_pred             cceeecCCcccccC----ccccccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHH
Confidence            99999999999855    3445567665443   32    25555444443321 223333 34579999765   3678


Q ss_pred             HHHHHHhcCCEEEEeCCCCCCCcccc----------cccCCc-EEEECCccccCccccceeEE-EEe-CHHHHHHHH---
Q 012296          318 VSDLCHKKGAIVCIDGTFATPLNQKA----------LSLGAD-LVLHSATKFIGGHNDVLAGS-ISG-SGKLVTQIR---  381 (466)
Q Consensus       318 Ia~la~~~gillIvDea~a~~~~~~~----------l~~gaD-ivv~S~sK~lgg~gdv~gG~-ivg-~~eli~~l~---  381 (466)
                      |.++.++++.+-+.|-+|.++..-+.          .+.|.. +++.|+.|-+|.-|.+.|.+ |++ +.+...++.   
T Consensus       223 i~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQl  302 (427)
T KOG1411|consen  223 ISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQL  302 (427)
T ss_pred             HHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHH
Confidence            89999999999999999754332111          122433 67889999999888765544 233 444444433   


Q ss_pred             -HHHHHhCCCchHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHHHcCC----------CeEEEeCCCCC
Q 012296          382 -NLHHVLGGALNPNAAYLII----------RGMKTLHLRVQQQNSTALRMAKILEAHP----------KVKRVHYPGLK  439 (466)
Q Consensus       382 -~~~~~~G~~lsp~~a~l~l----------~~L~tl~~R~~~~~~na~~La~~L~~~p----------~V~~V~yPgl~  439 (466)
                       .+.+.+-.+.+-..|.++.          .-+..+....+++..-++.|.+.|++..          +|....|.||.
T Consensus       303 k~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~  381 (427)
T KOG1411|consen  303 KILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEKEGSPGNWSHITKQIGMFCFTGLN  381 (427)
T ss_pred             HHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcCCCCccHHHHHHhhheeeecCCC
Confidence             3222221111111111111          1123344455666677788888887642          34456677774

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=96.72  E-value=0.01  Score=60.52  Aligned_cols=85  Identities=14%  Similarity=0.106  Sum_probs=56.3

Q ss_pred             HHHHHHhhcC-----CCceEEEEeCCCCCCcccc----cHHHHHHHHHhcCCEEEEeCCCCCC-----Cc-c--cccccC
Q 012296          285 MEGLEAALNN-----NNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATP-----LN-Q--KALSLG  347 (466)
Q Consensus       285 le~Le~ai~~-----~~tklV~lesP~NPtG~v~----dl~~Ia~la~~~gillIvDea~a~~-----~~-~--~~l~~g  347 (466)
                      ++++|+.|.+     .++.+|++|......|.-.    =++.|.+++++||+.+||||++.++     +. .  -.+...
T Consensus       255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~P  334 (484)
T KOG1405|consen  255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSP  334 (484)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCC
Confidence            5667776642     2478999998887777553    2789999999999999999995432     11 1  123345


Q ss_pred             CcEEEECCccccCccccceeEEEEeCHHHH
Q 012296          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLV  377 (466)
Q Consensus       348 aDivv~S~sK~lgg~gdv~gG~ivg~~eli  377 (466)
                      +|+|.  +||-|-.     ||+.. +++++
T Consensus       335 pD~vT--FSKK~q~-----gGffh-~~~fr  356 (484)
T KOG1405|consen  335 PDVVT--FSKKFQT-----GGFFH-DEEFR  356 (484)
T ss_pred             cccee--hhhhhhc-----Ccccc-CcccC
Confidence            78887  5676653     46544 44443

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=96.26  E-value=0.11  Score=53.51  Aligned_cols=202  Identities=14%  Similarity=0.130  Sum_probs=111.1

Q ss_pred             hHHHHHHHHHhhhCCC---cEEEeCCH-HHHHHHHHHHHccCCCE--EEEcCCCCcchHHHHHhhcccCCceEEEeC---
Q 012296          211 TTVVVEEKMSALEGAE---STVIMASG-MSASTVMLLALVPAGGH--IVTTTDCYRKTRIFIETVLPKMGITATVID---  281 (466)
Q Consensus       211 ~~~~Lee~LA~l~g~e---~~l~~sSG-s~Ai~~al~all~~Gd~--Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd---  281 (466)
                      ...+.++.+.++++.+   +++++..| +....++.+.++.....  |.+  ..|...-  . ..++.++..+...+   
T Consensus        51 v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl~~~~~~yv~~--g~Ws~~a--~-~eA~~~~~~~~~~~~~~  125 (365)
T COG1932          51 VLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLLGKRGTDYVDT--GAWSEFA--I-KEAKKVGKQPKLIDARI  125 (365)
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhhcccCceeEee--eehhHhH--H-HHHHHhcccccccccce
Confidence            3556788888999873   34555444 47888888888865542  433  2332211  1 11222221111111   


Q ss_pred             -------CCCHHHHHHhhcCCCceEEEEeCCCCCCccccc-HHHHHHHHHhcCCEEEEeCCCCCCCccccccc-CCcEEE
Q 012296          282 -------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD-VKLVSDLCHKKGAIVCIDGTFATPLNQKALSL-GADLVL  352 (466)
Q Consensus       282 -------~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d-l~~Ia~la~~~gillIvDea~a~~~~~~~l~~-gaDivv  352 (466)
                             ..+++.+.  +.++ ...|+++.=...+|.-.+ ...+.     .+.++|+|.+-..  .-.+++. ..|++.
T Consensus       126 ~~~~~~~iP~~~~~~--~~~~-~ayv~~~~NeTi~Gv~v~~~p~~~-----~~~~~v~D~SS~i--lsr~iDvsk~dviy  195 (365)
T COG1932         126 EEAGYGSIPDLSKWD--FSDN-DAYVHFCWNETISGVEVPELPDIG-----SDGLLVADASSAI--LSRPIDVSKYDVIY  195 (365)
T ss_pred             eccCccCCCChhhcc--cCCC-ccEEEEecCCcccceEccCCCCCC-----CCceEEEecccHH--hcCCCChhHcceEE
Confidence                   11333322  3332 333555322223465443 12111     1278999987432  2122222 358999


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHHHHHH--HH-------H-hC---CCchHHHHHHHHHhhHHH------HHHHHHH
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNL--HH-------V-LG---GALNPNAAYLIIRGMKTL------HLRVQQQ  413 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~--~~-------~-~G---~~lsp~~a~l~l~~L~tl------~~R~~~~  413 (466)
                      .+..|.+|+.|   .++++.++++++++...  -.       . -|   .+++.+.-|+....++++      +...++-
T Consensus       196 agaQKnlGpaG---ltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn  272 (365)
T COG1932         196 AGAQKNLGPAG---LTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARN  272 (365)
T ss_pred             EehhhccCccc---eEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999987   58889999998887543  11       0 11   233344445554555554      3345666


Q ss_pred             HHHHHHHHHHHHcCCCe
Q 012296          414 NSTALRMAKILEAHPKV  430 (466)
Q Consensus       414 ~~na~~La~~L~~~p~V  430 (466)
                      .++++.|.+++++.+..
T Consensus       273 ~~ka~~LY~~id~s~fy  289 (365)
T COG1932         273 QAKAQLLYDWIDKSDFY  289 (365)
T ss_pred             HHHHHHHHHHHHhCCcc
Confidence            78899999999988643

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=95.96  E-value=0.022  Score=52.03  Aligned_cols=52  Identities=13%  Similarity=0.378  Sum_probs=37.5

Q ss_pred             hhHHHHHHHHHhhhC--C---CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcc
Q 012296          210 PTTVVVEEKMSALEG--A---ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRK  261 (466)
Q Consensus       210 p~~~~Lee~LA~l~g--~---e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~  261 (466)
                      ..++++.+.+.+..|  .   .+.|++++|. .|+..++.+++.+||.|++++|.|++
T Consensus        96 ~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~  153 (153)
T PLN02994         96 NFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA  153 (153)
T ss_pred             HHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            344555555555545  2   2345555555 99999999999999999999999974

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=95.84  E-value=0.04  Score=54.28  Aligned_cols=152  Identities=15%  Similarity=0.234  Sum_probs=87.3

Q ss_pred             CcEEEeC--CHHHHHHHHHHHHc--cC-CCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC--------CCHHHHHHhh
Q 012296          226 ESTVIMA--SGMSASTVMLLALV--PA-GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--------ADMEGLEAAL  292 (466)
Q Consensus       226 e~~l~~s--SGs~Ai~~al~all--~~-Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--------~Dle~Le~ai  292 (466)
                      ..+++++  +|| .+.+.+.++.  +| ..-|+..+-.-.+....    .-..|.+...++.        .|++.+++.+
T Consensus        76 ~nc~vvpl~tgm-slslc~~s~r~krpkakyiiw~ridqks~~ks----i~~agfepiiie~i~d~d~l~tdleav~~~i  150 (432)
T KOG3843|consen   76 ANCFVVPLATGM-SLSLCFLSLRHKRPKAKYIIWLRIDQKSCFKS----IIHAGFEPIIIENILDGDELITDLEAVEAII  150 (432)
T ss_pred             hceeEEeccccc-cHHHHHHHHhhcCCcccEEEEEecchHHHHHH----HHhcCCCceeeeccccchHHHHhHHHHHHHH
Confidence            5666664  555 3444555543  23 34565544433332211    1223555554432        2688888888


Q ss_pred             cCCCce-EEEEeCCCC-CCccc-ccHHHHHHHHHhcCCEEEEeCCCCCCCc------ccccccC-CcEEEECCccccCcc
Q 012296          293 NNNNVS-LFFTESPTN-PFLRC-VDVKLVSDLCHKKGAIVCIDGTFATPLN------QKALSLG-ADLVLHSATKFIGGH  362 (466)
Q Consensus       293 ~~~~tk-lV~lesP~N-PtG~v-~dl~~Ia~la~~~gillIvDea~a~~~~------~~~l~~g-aDivv~S~sK~lgg~  362 (466)
                      ++.... ++.+.+.+. ---+. ..+++|+.+|..|+++-+|.++|+....      ....+.| +|.++.|+-|.|--|
T Consensus       151 ee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~~grida~vqsldknf~vp  230 (432)
T KOG3843|consen  151 EELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAECGRIDAFVQSLDKNFMVP  230 (432)
T ss_pred             HHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhhhccHHHHHHHhhhcceee
Confidence            754333 333322221 11122 2599999999999999999999874321      1112223 588999999999887


Q ss_pred             ccceeEEEEe--CHHHHHHHHHHHH
Q 012296          363 NDVLAGSISG--SGKLVTQIRNLHH  385 (466)
Q Consensus       363 gdv~gG~ivg--~~eli~~l~~~~~  385 (466)
                         .||.++.  ++..++.+.+...
T Consensus       231 ---vggaiia~fk~n~iq~iak~yp  252 (432)
T KOG3843|consen  231 ---VGGAIIAAFKDNFIQEIAKMYP  252 (432)
T ss_pred             ---cchhHhhHhHHHHHHHHHHhCC
Confidence               4777664  4566666665443

>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin)

Probab=87.90  E-value=1.4  Score=37.62  Aligned_cols=89  Identities=18%  Similarity=0.238  Sum_probs=60.6

Q ss_pred             HHHHHhhcccCCceEEEeCCC-CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhc--CCEEEEeCCCCCCC
Q 012296          263 RIFIETVLPKMGITATVIDPA-DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPL  339 (466)
Q Consensus       263 ~~~~~~~l~~~Gi~v~~vd~~-Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~--gillIvDea~a~~~  339 (466)
                      ...+...+++.|.++.++|.. +.+++.+.+.+.++++|.+....  +.......++++..++.  ++.+++=+.+.+..
T Consensus        17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~--~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~   94 (121)
T PF02310_consen   17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSM--TPNLPEAKRLARAIKERNPNIPIVVGGPHATAD   94 (121)
T ss_dssp             HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESS--STHHHHHHHHHHHHHTTCTTSEEEEEESSSGHH
T ss_pred             HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccC--cCcHHHHHHHHHHHHhcCCCCEEEEECCchhcC
Confidence            444556678889999988765 46888777765568888885543  23444667888888776  78999887766544


Q ss_pred             cccccc--cCCcEEEE
Q 012296          340 NQKALS--LGADLVLH  353 (466)
Q Consensus       340 ~~~~l~--~gaDivv~  353 (466)
                      +...++  .++|.++.
T Consensus        95 ~~~~l~~~~~~D~vv~  110 (121)
T PF02310_consen   95 PEEILREYPGIDYVVR  110 (121)
T ss_dssp             HHHHHHHHHTSEEEEE
T ss_pred             hHHHhccCcCcceecC
Confidence            444343  57887664

Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....

>cd02067 B12-binding B12 binding domain (B12-BD)

Probab=83.06  E-value=6.7  Score=33.52  Aligned_cols=90  Identities=12%  Similarity=0.067  Sum_probs=56.7

Q ss_pred             HHHHHhhcccCCceEEEeCCC-CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhc---CCEEEEeCCCCCC
Q 012296          263 RIFIETVLPKMGITATVIDPA-DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK---GAIVCIDGTFATP  338 (466)
Q Consensus       263 ~~~~~~~l~~~Gi~v~~vd~~-Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~---gillIvDea~a~~  338 (466)
                      ..++...++..|.++.+.... .++++.+.+.+.++.+|.++...  +.....+.++.+.+++.   ++.+++=+.....
T Consensus        16 ~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~--~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~   93 (119)
T cd02067          16 KNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLL--TTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTR   93 (119)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc--cccHHHHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence            345556778889999776533 56777777766568888885442  22345677787887775   4666665554332


Q ss_pred             CcccccccCCcEEEEC
Q 012296          339 LNQKALSLGADLVLHS  354 (466)
Q Consensus       339 ~~~~~l~~gaDivv~S  354 (466)
                      ........|+|.++..
T Consensus        94 ~~~~~~~~G~D~~~~~  109 (119)
T cd02067          94 DFKFLKEIGVDAYFGP  109 (119)
T ss_pred             hHHHHHHcCCeEEECC
Confidence            2223345677877754

This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	466
1qgn_A	445	Cystathionine Gamma-Synthase From Nicotiana Tabacum		1e-170
3mkj_A	398	Methionine Gamma-Lyase From Citrobacter Freundii Wi		1e-62
3jwa_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		1e-61
3jw9_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		1e-61
2rfv_A	398	High Resolution Structure Of L-Methionine Gamma-Lya		2e-61
1y4i_A	398	Crystal Structure Of Citrobacter Freundii L-Methion		8e-61
3e6g_A	400	Crystal Structure Of Xometc, A Cystathionine C-Lyas		7e-54
1pg8_A	398	Crystal Structure Of L-Methionine Alpha-, Gamma-Lya		4e-52
3vk2_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		1e-51
1gc0_A	398	Crystal Structure Of The Pyridoxal-5'-Phosphate Dep		2e-51
3aej_A	389	Reaction Intermediate Structure Of Entamoeba Histol		7e-51
3acz_A	389	Crystal Structure Of Entamoeba Histolytica Methioni		3e-50
3ndn_A	414	Crystal Structure Of O-Succinylhomoserine Sulfhydry		5e-49
1ibj_A	464	Crystal Structure Of Cystathionine Beta-Lyase From		1e-48
2nmp_A	403	Crystal Structure Of Human Cystathionine Gamma Lyas		2e-48
3elp_B	410	Structure Of Cystationine Gamma Lyase Length = 410		2e-48
1e5e_A	404	Methionine Gamma-Lyase (Mgl) From Trichomonas Vagin		6e-48
3qhx_A	392	Crystal Structure Of Cystathionine Gamma-Synthase M		8e-47
1pff_A	331	Crystal Structure Of Homocysteine Alpha-, Gamma-Lya		3e-42
1cs1_A	386	Cystathionine Gamma-Synthase (Cgs) From Escherichia		4e-42
1n8p_A	393	Crystal Structure Of Cystathionine Gamma-lyase From		7e-41
1cl2_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		8e-34
2fq6_A	415	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		1e-33
1cl1_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		4e-33
2ctz_A	421	Crystal Structure Of O-Acetyl Homoserine Sulfhydryl		2e-32
3ri6_A	430	A Novel Mechanism Of Sulfur Transfer Catalyzed By O		6e-31
2cb1_A	412	Crystal Structure Of O-Actetyl Homoserine Sulfhydry		1e-29

>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum Length = 445

Iteration: 1
 Score =  593 bits (1530), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 286/343 (83%), Positives = 317/343 (92%), Gaps = 5/343 (1%)
Query: 124 DDIALVDGL----KNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVN 179
           +D+ALV+      +NVQ ++L  +K  ASFL+SDGS+AIHAGERLGRGIVTDAITTPVVN
Sbjct: 25  EDVALVENETCNDQNVQFDSLPSMKY-ASFLNSDGSVAIHAGERLGRGIVTDAITTPVVN 83
Query: 180 TSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSAST 239
           TSAYFF KT+ELIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAEST++MASGM AST
Sbjct: 84  TSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLMASGMCAST 143
Query: 240 VMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSL 299
           VMLLALVPAGGHIVTTTDCYRKTRIFIET+LPKMGITATVIDPAD+  LE ALN   V+L
Sbjct: 144 VMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNL 203
Query: 300 FFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFI 359
           FFTESPTNPFLRCVD++LVS LCH+KGA+VCIDGTFATPLNQKAL+LGADLVLHSATKF+
Sbjct: 204 FFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFL 263
Query: 360 GGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 419
           GGHNDVLAG ISG  KLV++IRNLHH+LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR
Sbjct: 264 GGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 323
Query: 420 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           MA+ILEAHPKV+ V+YPGL+SHPEHHIA +QMTGFGG VSFEV
Sbjct: 324 MAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEV 366

>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With Pyridoximine-5'- Phosphate Length = 398

Iteration: 1
 Score =  237 bits (604), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/307 (38%), Positives = 186/307 (60%), Gaps = 5/307 (1%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +E+
Sbjct: 14  VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
           K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI  
Sbjct: 72  KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGXTHAFLSHSMPKFGINV 131
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
           + +D A  E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF +
Sbjct: 132 SFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 395
           P  Q+ L LGAD+V+HS TK+I GH DV+ G I G  + + Q R   L  + GG ++P  
Sbjct: 191 PYXQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGXMSPFN 250
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 455
           A+L +RG+KTL +R+++    AL++A+ LE HP + RV+YPGL SHP++ +  +QM+  G
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPG 310
Query: 456 GVVSFEV 462
           G++SFE+
Sbjct: 311 GIISFEI 317

>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With Methionine Phosphinate Length = 398

Iteration: 1
 Score =  233 bits (595), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 185/307 (60%), Gaps = 5/307 (1%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +E+
Sbjct: 14  VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
           K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI  
Sbjct: 72  KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
           + +D A  E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF +
Sbjct: 132 SFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 395
           P  Q+ L LGAD+V+HS T +I GH DV+ G I G  + + Q R   L  + GG ++P  
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 455
           A+L +RG+KTL +R+++    AL++A+ LE HP + RV+YPGL SHP++ +  +QM+  G
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPG 310
Query: 456 GVVSFEV 462
           G++SFE+
Sbjct: 311 GIISFEI 317

>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With S-Ethyl-Cysteine Length = 398

Iteration: 1
 Score =  233 bits (595), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 185/307 (60%), Gaps = 5/307 (1%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +E+
Sbjct: 14  VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
           K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI  
Sbjct: 72  KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
           + +D A  E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF +
Sbjct: 132 SFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 395
           P  Q+ L LGAD+V+HS T +I GH DV+ G I G  + + Q R   L  + GG ++P  
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 455
           A+L +RG+KTL +R+++    AL++A+ LE HP + RV+YPGL SHP++ +  +QM+  G
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPG 310
Query: 456 GVVSFEV 462
           G++SFE+
Sbjct: 311 GIISFEI 317

>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii Length = 398

Iteration: 1
 Score =  233 bits (593), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 184/307 (59%), Gaps = 5/307 (1%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +E+
Sbjct: 14  VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
           K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI  
Sbjct: 72  KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
             +D A  E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF +
Sbjct: 132 RFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 395
           P  Q+ L LGAD+V+HS T +I GH DV+ G I G  + + Q R   L  + GG ++P  
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 455
           A+L +RG+KTL +R+++    AL++A+ LE HP + RV+YPGL SHP++ +  +QM+  G
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPG 310
Query: 456 GVVSFEV 462
           G++SFE+
Sbjct: 311 GIISFEI 317

>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii L-Methionine-Lyase Length = 398

Iteration: 1
 Score =  231 bits (588), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 183/307 (59%), Gaps = 5/307 (1%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +E+
Sbjct: 14  VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
           K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI  
Sbjct: 72  KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
             +D    E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF +
Sbjct: 132 RFVDAGKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 395
           P  Q+ L LGAD+V+HS T +I GH DV+ G I G  + + Q R   L  + GG ++P  
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 455
           A+L +RG+KTL +R+++    AL++A+ LE HP + RV+YPGL SHP++ +  +QM+  G
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPG 310
Query: 456 GVVSFEV 462
           G++SFE+
Sbjct: 311 GIISFEI 317

>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like Protein From Xanthomonas Oryzae Pv.Oryzae Length = 400

Iteration: 1
 Score =  207 bits (528), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 120/309 (38%), Positives = 177/309 (57%), Gaps = 17/309 (5%)
Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           +LAIH G+       T A+  P+  TS Y      E           FEY R  NPT   
Sbjct: 22  TLAIHGGQSPDPS--TGAVMPPIYATSTYAQSSPGE--------HQGFEYSRTHNPTRFA 71
Query: 215 VEEKMSALEGAESTVIMASGMSA-STVMLLALVPAGGHIVTTTDCYRKT-RIFIETVLPK 272
            E  ++ALEG       ASGM+A STVM   L+ AG H+V   D Y  T R+F       
Sbjct: 72  YERCVAALEGGTRAFAFASGMAATSTVM--ELLDAGSHVVAMDDLYGGTFRLFERVRRRT 129
Query: 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 332
            G+  + +D  D    +AA+  +   + + E+PTNP L+ VD+  ++ +  K G +  +D
Sbjct: 130 AGLDFSFVDLTDPAAFKAAIRADT-KMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVD 188
Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG--SISGSGKLVTQIRNLHHVLGGA 390
            TFA+P+ Q+ LSLGADLV+HSATK++ GH+D++ G   +  + +L  Q+  L + +GG 
Sbjct: 189 NTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGV 248
Query: 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQ 450
             P  ++L +RG+KTL LR++     AL +A+ LE HP +++V YPGL SHP+H +A +Q
Sbjct: 249 QGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQ 308
Query: 451 MTGFGGVVS 459
           M+GFGG+VS
Sbjct: 309 MSGFGGIVS 317

>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase Length = 398

Iteration: 1
 Score =  202 bits (513), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 110/293 (37%), Positives = 171/293 (58%), Gaps = 3/293 (1%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
           A+  PV  T+ + F             +A   Y R  NPT  ++E +M++LEG E+ + +
Sbjct: 27  ALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86
Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
           ASGM A T  L  L+  G  ++     Y  T  F+   + + G+    +D AD++ LEAA
Sbjct: 87  ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAA 146
Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
           +      ++F ESP NP +   D+  V+ +  K GA V +D T+ TP  Q+ L LGADLV
Sbjct: 147 MTPATRVIYF-ESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLV 205
Query: 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 409
           +HSATK++ GH D+ AG + GS  LV +IR   L  + G  L+P+ A L++RG+KTL+LR
Sbjct: 206 VHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265
Query: 410 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           + +  + A  +A+ L   P+V+ +HYPGL S P++ +A QQM+  GG+++FE+
Sbjct: 266 MDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFEL 318

>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Pseudomonas Putida C116h Mutant. Length = 398

Iteration: 1
 Score =  200 bits (509), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/293 (37%), Positives = 170/293 (58%), Gaps = 3/293 (1%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
           A+  PV  T+ + F             +A   Y R  NPT  ++E +M++LEG E+ + +
Sbjct: 27  ALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86
Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
           ASGM A T  L  L+  G  ++     Y  T  F+   + + G+    +D AD++ LEAA
Sbjct: 87  ASGMGAITSTLWTLLRPGDEVLLGNTLYGHTFAFLHHGIGEFGVKLRHVDMADLQALEAA 146
Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
           +      ++F ESP NP +   D+  V+ +  K GA V +D T+ TP  Q+ L LGADLV
Sbjct: 147 MTPATRVIYF-ESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLV 205
Query: 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 409
           +HSAT ++ GH D+ AG + GS  LV +IR   L  + G  L+P+ A L++RG+KTL+LR
Sbjct: 206 VHSATXYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265
Query: 410 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           + +  + A  +A+ L   P+V+ +HYPGL S P++ +A QQM+  GG+++FE+
Sbjct: 266 MDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFEL 318

>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida Length = 398

Iteration: 1
 Score =  199 bits (507), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/293 (37%), Positives = 170/293 (58%), Gaps = 3/293 (1%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
           A+  PV  T+ + F             +A   Y R  NPT  ++E +M++LEG E+ + +
Sbjct: 27  ALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86
Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
           ASGM A T  L  L+  G  ++     Y  T  F+   + + G+    +D AD++ LEAA
Sbjct: 87  ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAA 146
Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
           +      ++F ESP NP +   D+  V+ +  K GA V +D T+ TP  Q+ L LGADLV
Sbjct: 147 MTPATRVIYF-ESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLV 205
Query: 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 409
           +HSAT ++ GH D+ AG + GS  LV +IR   L  + G  L+P+ A L++RG+KTL+LR
Sbjct: 206 VHSATXYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265
Query: 410 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           + +  + A  +A+ L   P+V+ +HYPGL S P++ +A QQM+  GG+++FE+
Sbjct: 266 MDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFEL 318

>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Tetramer Containing Michaelis Complex And Methionine- Pyridoxal-5'-Phosphate Length = 389

Iteration: 1
 Score =  198 bits (503), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 106/288 (36%), Positives = 159/288 (55%), Gaps = 2/288 (0%)
Query: 176 PVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM 235
           P+  TS + F  T +  D    +     Y R GNPT    EE + ++EGA  +    SGM
Sbjct: 25  PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 236 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 295
            A +   LA +  G H++     Y  T       LP+ GI   +ID +D+E ++AA   N
Sbjct: 85  GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 296 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSA 355
              + + ESP NP  +  D+K ++ +CH++GA + +D TF +P   K L LGAD+ LHS 
Sbjct: 145 T-KMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSV 203
Query: 356 TKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 414
           +K+I GH DV+ G S + + + +  I+      G  + P  A+L  RGMKTL +R+Q   
Sbjct: 204 SKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHM 263
Query: 415 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
              L++AK LE H K+ +V++PGL+S P H IA +QMTG+G    FE+
Sbjct: 264 ENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEM 311

>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Length = 389

Iteration: 1
 Score =  196 bits (497), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/288 (36%), Positives = 158/288 (54%), Gaps = 2/288 (0%)
Query: 176 PVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM 235
           P+  TS + F  T +  D    +     Y R GNPT    EE + ++EGA  +    SGM
Sbjct: 25  PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 236 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 295
            A +   LA +  G H++     Y  T       LP+ GI   +ID +D+E ++AA   N
Sbjct: 85  GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 296 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSA 355
              + + ESP NP  +  D+K ++ +CH++GA + +D TF +P   K L LGAD+ LHS 
Sbjct: 145 T-KMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSV 203
Query: 356 TKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 414
           + +I GH DV+ G S + + + +  I+      G  + P  A+L  RGMKTL +R+Q   
Sbjct: 204 SXYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHM 263
Query: 415 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
              L++AK LE H K+ +V++PGL+S P H IA +QMTG+G    FE+
Sbjct: 264 ENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEM 311

>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase From Mycobacterium Tuberculosis Covalently Bound To Pyridoxal-5- Length = 414

Iteration: 1
 Score =  191 bits (486), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 99/260 (38%), Positives = 153/260 (58%), Gaps = 2/260 (0%)
Query: 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
           + Y RYGNPT  V EE++  +EGA +    ASGM+A    L AL+ AG  +V     +  
Sbjct: 73  YVYSRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGS 132
Query: 262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
             +    +LP+ G+    +D  D+   E AL+    ++FF E+P+NP    VD+  V++L
Sbjct: 133 CFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFF-ETPSNPMQSLVDIAAVTEL 191
Query: 322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QI 380
            H  GA V +D  FATPL Q+   LG D+V++S T  I G   VL G+I G  + +   +
Sbjct: 192 AHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTXHIDGQGRVLGGAILGDREYIDGPV 251
Query: 381 RNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKS 440
           + L    G A++   A+++++G++TL +RVQ  N++A R+A+ L  HP V+ V YP L S
Sbjct: 252 QKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPS 311
Query: 441 HPEHHIATQQMTGFGGVVSF 460
           HP++ +A +QM+G G VV+F
Sbjct: 312 HPQYDLAKRQMSGGGTVVTF 331

>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana Length = 464

Iteration: 1
 Score =  190 bits (483), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 167/291 (57%), Gaps = 11/291 (3%)
Query: 171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230
           DA++TP+  T+   FK+ + +          ++Y R GNPT   +E  ++ L+ A+    
Sbjct: 102 DAMSTPLYQTAT--FKQPSAI------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFC 153
Query: 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290
             SGM+A +  +  L+  G  IV   D Y  +   +  V+P+ G+    ++   ++ + A
Sbjct: 154 FTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAA 212
Query: 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 350
           A+      L + ESPTNP  +  D++ +S++ H +GA+V +D +  +P+  + L LGAD+
Sbjct: 213 AIGPQ-TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADI 271
Query: 351 VLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 409
           V+HSATKFI GH+DV+AG ++  G KL  ++  L +  G  L P   +L +RG+KT+ LR
Sbjct: 272 VMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALR 331
Query: 410 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF 460
           +++Q   A ++A  L +HP+VK+V+Y GL  HP HH+   Q  G G V SF
Sbjct: 332 IEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSF 382

>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase Length = 403

Iteration: 1
 Score =  189 bits (481), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 182/308 (59%), Gaps = 13/308 (4%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
           AIH G+   +   + A+  P+  ++   FK+ A        + + FEY R GNPT   +E
Sbjct: 23  AIHVGQDPEQW-TSRAVVPPISLSTT--FKQGAP------GQHSGFEYSRSGNPTRNCLE 73
Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
           + ++AL+GA+  +  ASG++A TV +  L+ AG  I+   D Y  T  +   V  + G+ 
Sbjct: 74  KAVAALDGAKYCLAFASGLAA-TVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLK 132
Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV-CIDGTF 335
            + +D + ++ LEAA+      L + E+PTNP  + +D++  + + HK G I+  +D TF
Sbjct: 133 ISFVDCSKIKLLEAAITPET-KLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTF 191
Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPN 394
            +P  Q+ L+LGAD+ ++SATK++ GH+DV+ G +S     L  ++R L + LG   +P 
Sbjct: 192 MSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPI 251
Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 454
             YL  RG+KTLH+R+++     + +A+ LE++P V++V YPGL SHP+H +  +Q TG 
Sbjct: 252 DCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGC 311
Query: 455 GGVVSFEV 462
            G+V+F +
Sbjct: 312 TGMVTFYI 319

>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase Length = 410

Iteration: 1
 Score =  189 bits (481), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 182/308 (59%), Gaps = 13/308 (4%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
           AIH G+   +   + A+  P+  ++   FK+ A        + + FEY R GNPT   +E
Sbjct: 27  AIHVGQDPEQ-WTSRAVVPPISLSTT--FKQGAP------GQHSGFEYSRSGNPTRNCLE 77
Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
           + ++AL+GA+  +  ASG++A TV +  L+ AG  I+   D Y  T  +   V  + G+ 
Sbjct: 78  KAVAALDGAKYCLAFASGLAA-TVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLK 136
Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV-CIDGTF 335
            + +D + ++ LEAA+      L + E+PTNP  + +D++  + + HK G I+  +D TF
Sbjct: 137 ISFVDCSKIKLLEAAITPE-TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTF 195
Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPN 394
            +P  Q+ L+LGAD+ ++SATK++ GH+DV+ G +S     L  ++R L + LG   +P 
Sbjct: 196 MSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPI 255
Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 454
             YL  RG+KTLH+R+++     + +A+ LE++P V++V YPGL SHP+H +  +Q TG 
Sbjct: 256 DCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGC 315
Query: 455 GGVVSFEV 462
            G+V+F +
Sbjct: 316 TGMVTFYI 323

>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In Complex With Propargylglycine Length = 404

Iteration: 1
 Score =  188 bits (477), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 166/288 (57%), Gaps = 4/288 (1%)
Query: 176 PVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM 235
           P+  TS + F    +  +    + + + Y R GNPT   +E K++ LE  E+ V  +SGM
Sbjct: 28  PIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVATSSGM 87
Query: 236 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 295
            A    +L ++ AG H+++    Y  T    E  L K GI    I+ A    ++  +  N
Sbjct: 88  GAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPN 147
Query: 296 NVSLFFTESPTNPFLRCVDVKLVSDLCH-KKGAIVCIDGTFATPLNQKALSLGADLVLHS 354
              ++F E+P NP L+ +D++ V    H ++G +V  D TF +P+    +  G D+V+HS
Sbjct: 148 TKIVYF-ETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHS 206
Query: 355 ATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQ 412
           ATK+I GH DV+AG I G   L+ QIR   +  + G  ++P+ A+LI RG+ TL++R++ 
Sbjct: 207 ATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLNIRMKA 266
Query: 413 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF 460
           ++  A+++A+ L++HP V++V+YPG + H  H IA +QM  +G +++F
Sbjct: 267 ESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF 314

>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes Length = 392

Iteration: 1
 Score =  184 bits (468), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 166/307 (54%), Gaps = 11/307 (3%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
           AIH+G R      T A+  P+  +S +       L       R  +EY R GNPT   +E
Sbjct: 22  AIHSGYR--PDPATGAVNAPIYASSTFAQDGVGGL-------RGGYEYARTGNPTRTALE 72
Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
             ++A+E A      +SGM+A+   L A++  G H+V   D Y  T   I+ V     + 
Sbjct: 73  AALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVE 132
Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
            T +  AD++ + AA+      L + E+PTNP L   D+  ++ L     A V +D TFA
Sbjct: 133 YTPVALADLDAVRAAIRPTT-RLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFA 191
Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNA 395
           +P  Q+ LSLGAD+VLHS T +IGGH+DV+ G+ ++   +L      L +  G    P  
Sbjct: 192 SPALQQPLSLGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFD 251
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 455
           AYL +RG+KTL LR+Q+ +  A  +A+ L  HP +  V YPGL SHP H +A +QM GFG
Sbjct: 252 AYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFG 311
Query: 456 GVVSFEV 462
           G+VS  +
Sbjct: 312 GMVSVRM 318

>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At 1.8 Angstroms Length = 331

Iteration: 1
 Score =  169 bits (428), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/251 (36%), Positives = 144/251 (57%), Gaps = 4/251 (1%)
Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +E K++ LE AE+    ASGM A    +   + AG H+++    Y  T    E  L K G
Sbjct: 3   LEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFG 62
Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVK-LVSDLCHKKGAIVCIDG 333
           +    ID A    +E  L  N   ++F E+P NP L+ +D++  V     +K  +V +D 
Sbjct: 63  VEVDFIDMAVPGNIEKHLKPNTRIVYF-ETPANPTLKVIDIEDAVKQARKQKDILVIVDN 121
Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHHVLGGAL 391
           TFA+P+    L LG D+V+HSATK+I GH DV+AG +     ++ ++++  +  + G  +
Sbjct: 122 TFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAII 181
Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM 451
           +P+ A+LI RG  TL +RV++    A ++A+ L  H  VK+V+YPGL  HP H IA +QM
Sbjct: 182 SPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM 241
Query: 452 TGFGGVVSFEV 462
             FG +++F+V
Sbjct: 242 KMFGSMIAFDV 252

>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli Length = 386

Iteration: 1
 Score =  169 bits (427), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 158/294 (53%), Gaps = 16/294 (5%)
Query: 173 ITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232
           +  P+  +S Y F        F E R  + +Y R GNPT  VV+  ++ LEG    V+  
Sbjct: 23  VVPPIHLSSTYNFTG------FNEPR--AHDYSRRGNPTRDVVQRALAELEGGAGAVLTN 74
Query: 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAAL 292
           +GMSA  ++    +  G  +V   DCY  +    +++  +       +D  D + L AAL
Sbjct: 75  TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAAL 134
Query: 293 NNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVL 352
                 L   ESP+NP LR VD+  +  L  + GA+  +D TF +P  Q  L+LGADLVL
Sbjct: 135 AEKP-KLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVL 193
Query: 353 HSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHH---VLGGALNPNAAYLIIRGMKTLHL 408
           HS T ++ GH+DV+AG  I+    +VT++    +   V GGA +   +YL++RG++TL  
Sbjct: 194 HSCTXYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFD---SYLLLRGLRTLVP 250
Query: 409 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           R++     A  + K L+  P VK++++P L  +  H IA +Q  GFG ++SFE+
Sbjct: 251 RMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFEL 304

>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast Length = 393

Iteration: 1
 Score =  164 bits (416), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 107/314 (34%), Positives = 171/314 (54%), Gaps = 21/314 (6%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
           AIHAGE +    V  ++  P+  ++ +     A  I        ++EY R  NP    +E
Sbjct: 12  AIHAGEHVD---VHGSVIEPISLSTTFKQSSPANPI-------GTYEYSRSQNPNRENLE 61
Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
             ++ALE A+  +  +SG SA+T  +L  +P G H V+  D Y  T  +   V    G+ 
Sbjct: 62  RAVAALENAQYGLAFSSG-SATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120
Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA----IVCID 332
            +  +  D+      L   N  L + E+PTNP L+  D++ V+DL  K  A    I+ +D
Sbjct: 121 TSFTN--DLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVD 178
Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGAL 391
            TF +P     L+ GAD+V+HSATK+I GH+DV+ G ++ + K L  +++ L + +G   
Sbjct: 179 NTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIP 238
Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK-VKRVHYPGLKSHPEHHIATQQ 450
           +P  A+L  RG+KTLHLRV+Q   +A ++A+ L A  + V  V+YPGLK+HP + +  +Q
Sbjct: 239 SPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQ 298
Query: 451 MTGF--GGVVSFEV 462
                 GG++SF +
Sbjct: 299 HRDALGGGMISFRI 312

>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With Aminoethoxyvinylglycine Length = 395

Iteration: 1
 Score =  141 bits (355), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 140/268 (52%), Gaps = 5/268 (1%)
Query: 197 KRRASFE--YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVT 254
           + RA+ E  YGR G  T   +++ M  LEG    V+   G +A    +LA +  G H++ 
Sbjct: 47  RNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLM 106
Query: 255 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD 314
           T   Y  ++ F   +L K+G+T +  DP     +   L  N   + F ESP +  +   D
Sbjct: 107 TNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNT-KIVFLESPGSITMEVHD 165
Query: 315 VKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 372
           V  +          AI+ ID T+A  +  KAL  G D+ + +ATK++ GH+D + G+   
Sbjct: 166 VPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVC 225
Query: 373 SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKR 432
           + +   Q+R   +++G  ++ + AY+  RG++TL +R++Q + ++L++A+ L  HP+V R
Sbjct: 226 NARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVAR 285
Query: 433 VHYPGLKSHPEHHIATQQMTGFGGVVSF 460
           V++P L     H    +  TG  G+ SF
Sbjct: 286 VNHPALPGSKGHEFWKRDFTGSSGLFSF 313

>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide Length = 415

Iteration: 1
 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 140/268 (52%), Gaps = 5/268 (1%)
Query: 197 KRRASFE--YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVT 254
           + RA+ E  YGR G  T   +++ M  LEG    V+   G +A    +LA +  G H++ 
Sbjct: 67  RNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLM 126
Query: 255 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD 314
           T   Y  ++ F   +L K+G+T +  DP     +   L  N   + F ESP +  +   D
Sbjct: 127 TNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNT-KIVFLESPGSITMEVHD 185
Query: 315 VKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 372
           V  +          AI+ ID T+A  +  KAL  G D+ + +ATK++ GH+D + G+   
Sbjct: 186 VPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVC 245
Query: 373 SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKR 432
           + +   Q+R   +++G  ++ + AY+  RG++TL +R++Q + ++L++A+ L  HP+V R
Sbjct: 246 NARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVAR 305
Query: 433 VHYPGLKSHPEHHIATQQMTGFGGVVSF 460
           V++P L     H    +  TG  G+ SF
Sbjct: 306 VNHPALPGSKGHEFWKRDFTGSSGLFSF 333

>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli Length = 395

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 139/268 (51%), Gaps = 5/268 (1%)
Query: 197 KRRASFE--YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVT 254
           + RA+ E  YGR G  T   +++ M  LEG    V+   G +A    +LA +  G H++ 
Sbjct: 47  RNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLM 106
Query: 255 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD 314
           T   Y  ++ F   +L K+G+T +  DP     +   L  N   + F ESP +  +   D
Sbjct: 107 TNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNT-KIVFLESPGSITMEVHD 165
Query: 315 VKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 372
           V  +          AI+ ID T+A  +  KAL  G D+ + +AT ++ GH+D + G+   
Sbjct: 166 VPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMIGTAVC 225
Query: 373 SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKR 432
           + +   Q+R   +++G  ++ + AY+  RG++TL +R++Q + ++L++A+ L  HP+V R
Sbjct: 226 NARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVAR 285
Query: 433 VHYPGLKSHPEHHIATQQMTGFGGVVSF 460
           V++P L     H    +  TG  G+ SF
Sbjct: 286 VNHPALPGSKGHEFWKRDFTGSSGLFSF 313

>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8 Length = 421

Iteration: 1
 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 156/337 (46%), Gaps = 35/337 (10%)
Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           +L +HAG       ++  +  P+  T++Y FK      +    +     Y R  NPT  V
Sbjct: 5   TLQLHAGYEPEPTTLSRQV--PIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDV 62
Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +E++++ALEG ++ +  ASG +A  + L  L  AG +IV+T + Y  T    +  L ++G
Sbjct: 63  LEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLG 122
Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
           I        +      AL +     ++ ES  NP L   D++ ++    +KG  + +D T
Sbjct: 123 IEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNT 182
Query: 335 FATP-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------LVTQIRNLH 384
           F       + L+ GA LV HS TK++GGH  V+AG+I   G          L+T+ +  +
Sbjct: 183 FGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGY 242
Query: 385 HVL-----------------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 421
           H L                       G AL P  A++++ GM+TL LR ++     L +A
Sbjct: 243 HGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLA 302
Query: 422 KILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVV 458
             L   P+V  V+YPGL  HP H  A +   G  G V
Sbjct: 303 HWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAV 339

>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By O-Acetylhomoserine Sulfhydrylase In Methionine Biosynthetic Pathway Of Wolinella Succinogenes Length = 430

Iteration: 1
 Score =  132 bits (331), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 152/315 (48%), Gaps = 22/315 (6%)
Query: 169 VTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAEST 228
           V  A+ TPV + +A+ F+ + E+      R     Y R  NPT   +E+++  L GA   
Sbjct: 41  VHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALGV 100
Query: 229 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288
           + + SGM+A +  +L L  AG  +VTT   +  T    +  LP  GI    +D  D   +
Sbjct: 101 LALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAV 160
Query: 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 348
           E A +     L F E+ +NP L+  D++ +S + H KG  + +D T   P   +A  LG 
Sbjct: 161 EHACDETT-KLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGV 219
Query: 349 DLVLHSATKFIGGHNDV------------------LAGSISGSGKLVTQIRNLHHV---L 387
           D+ + S+TKFI G                      LA   + +G +    +    V   L
Sbjct: 220 DIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNL 279
Query: 388 GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIA 447
           G +L+P+ AYL   G++T+ LR+++    A  +A  L + P+VK V++P L   P + IA
Sbjct: 280 GPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIA 339
Query: 448 TQQMTGFGGVVSFEV 462
            +Q    G +++FE+
Sbjct: 340 KRQFRYAGSILTFEL 354

>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8,Oah2 Length = 412

Iteration: 1
 Score =  127 bits (319), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 162/323 (50%), Gaps = 38/323 (11%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFE---YGRYGNPTTVVVEEKMSALEGAEST 228
           A+  P+   +AY FK   E     ++R A+ E   Y R  +PT   +EE++ ALEGA   
Sbjct: 19  AVGLPIYAVAAYGFKTLEE----GQERFATGEGYVYARQKDPTAKALEERLKALEGALEA 74
Query: 229 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288
           V++ASG +A+   LLAL+  G  +V     + +T      VL  MG+T   +DP + E +
Sbjct: 75  VVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEAV 133
Query: 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-ATPLNQKALSLG 347
             AL+    ++ F E+  NP L   D++ ++ L  + G  + +D TF A     + L+ G
Sbjct: 134 REALSAKTRAV-FVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWG 192
Query: 348 ADLVLHSATKFIGGHNDVLAGSISG-----------------SGKLVTQ----------I 380
           A +V+ S T +  GH  VL G++                    G++  +          +
Sbjct: 193 AHVVVESLTXWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERV 252
Query: 381 RNLHHVLGG-ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK 439
           R L   L G AL+P  AYL+ +G++T+ LRV + + TA  +A+ L+ HPKVK + YPGL 
Sbjct: 253 RTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLP 312
Query: 440 SHPEHHIATQQMTGFGGVVSFEV 462
             P H  A + +   G +++ ++
Sbjct: 313 EDPAHRNARKYLASGGPILTLDL 335

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	466
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	1e-162
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	1e-120
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	1e-119
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	1e-119
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	1e-119
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	1e-118
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	1e-117
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	1e-115
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	1e-114
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	1e-110
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	1e-110
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	1e-108
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	1e-104
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	1e-101
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	2e-81
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	3e-76
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	5e-74
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	2e-62
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	8e-56
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	2e-55
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	7e-51
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	2e-42
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	8e-05
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	9e-05
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	1e-04
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	4e-04
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	8e-04

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Length = 445

 Score =  464 bits (1196), Expect = e-162
 Identities = 292/366 (79%), Positives = 326/366 (89%), Gaps = 6/366 (1%)

Query: 102 SAAATAASAAPAPPAPVEITSGDDIALVDGL-----KNVQLEALADLKNEASFLSSDGSL 156
           + A  AA+AA A  APV+ T  ++   +        +NVQ ++L  +K  ASFL+SDGS+
Sbjct: 2   AKAVDAAAAAAAAIAPVDTTVVNEDVALVENETCNDQNVQFDSLPSMK-YASFLNSDGSV 60

Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
           AIHAGERLGRGIVTDAITTPVVNTSAYFF KT+ELIDFKEKRRASFEYGRYGNPTTVV+E
Sbjct: 61  AIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLE 120

Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
           EK+SALEGAEST++MASGM ASTVMLLALVPAGGHIVTTTDCYRKTRIFIET+LPKMGIT
Sbjct: 121 EKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGIT 180

Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
           ATVIDPAD+  LE ALN   V+LFFTESPTNPFLRCVD++LVS LCH+KGA+VCIDGTFA
Sbjct: 181 ATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFA 240

Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAA 396
           TPLNQKAL+LGADLVLHSATKF+GGHNDVLAG ISG  KLV++IRNLHH+LGGALNPNAA
Sbjct: 241 TPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAA 300

Query: 397 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 456
           YLIIRGMKTLHLRVQQQNSTALRMA+ILEAHPKV+ V+YPGL+SHPEHHIA +QMTGFGG
Sbjct: 301 YLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGG 360

Query: 457 VVSFEV 462
            VSFEV
Sbjct: 361 AVSFEV 366

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398

 Score =  356 bits (916), Expect = e-120
 Identities = 118/309 (38%), Positives = 185/309 (59%), Gaps = 5/309 (1%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
             +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +
Sbjct: 12  QIVHAGQQ--PDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDAL 69

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           E+K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI
Sbjct: 70  EKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGI 129

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
               +D A  E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF
Sbjct: 130 NVRFVDAAKPEEIRAAMRPE-TKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTF 188

Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNP 393
            +P  Q+ L LGAD+V+HS TK+I GH DV+ G I G  + + Q R   L  + GG ++P
Sbjct: 189 MSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSP 248

Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 453
             A+L +RG+KTL +R+++    AL++A+ LE HP + RV+YPGL SHP++ +  +QM+ 
Sbjct: 249 FNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSL 308

Query: 454 FGGVVSFEV 462
            GG++SFE+
Sbjct: 309 PGGIISFEI 317

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415

 Score =  354 bits (912), Expect = e-119
 Identities = 83/309 (26%), Positives = 149/309 (48%), Gaps = 6/309 (1%)

Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELID-FKEKRRASFEYGRYGNPTTVVV 215
            ++AG          A+ + +   S+  F          + +      YGR G  T   +
Sbjct: 30  LVNAGRSKKYT--LGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSL 87

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           ++ M  LEG    V+   G +A    +LA +  G H++ T   Y  ++ F   +L K+G+
Sbjct: 88  QQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGV 147

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDG 333
           T +  DP     +   L  N   + F ESP +  +   DV  +          AI+ ID 
Sbjct: 148 TTSWFDPLIGADIVKHLQPN-TKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDN 206

Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP 393
           T+A  +  KAL  G D+ + +ATK++ GH+D + G+   + +   Q+R   +++G  ++ 
Sbjct: 207 TWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDA 266

Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 453
           + AY+  RG++TL +R++Q + ++L++A+ L  HP+V RV++P L     H    +  TG
Sbjct: 267 DTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTG 326

Query: 454 FGGVVSFEV 462
             G+ SF +
Sbjct: 327 SSGLFSFVL 335

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* Length = 389

 Score =  353 bits (909), Expect = e-119
 Identities = 108/310 (34%), Positives = 161/310 (51%), Gaps = 6/310 (1%)

Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
            +  +H         V  +   P+  TS + F  T +  D    +     Y R GNPT  
Sbjct: 7   TTTLLHPKGDH----VLHSHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVE 62

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
             EE + ++EGA  +    SGM A +   LA +  G H++     Y  T       LP+ 
Sbjct: 63  QFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRF 122

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
           GI   +ID +D+E ++AA   N   + + ESP NP  +  D+K ++ +CH++GA + +D 
Sbjct: 123 GIEVDLIDTSDVEKVKAAWKPN-TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDA 181

Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALN 392
           TF +P   K L LGAD+ LHS +K+I GH DV+ G  S      +  I+      G  + 
Sbjct: 182 TFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMA 241

Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 452
           P  A+L  RGMKTL +R+Q      L++AK LE H K+ +V++PGL+S P H IA +QMT
Sbjct: 242 PMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMT 301

Query: 453 GFGGVVSFEV 462
           G+G    FE+
Sbjct: 302 GYGSTFLFEM 311

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Length = 398

 Score =  353 bits (909), Expect = e-119
 Identities = 113/309 (36%), Positives = 174/309 (56%), Gaps = 5/309 (1%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
            AIH G          A+  PV  T+ + F             +A   Y R  NPT  ++
Sbjct: 13  RAIHHGYD--PQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLL 70

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           E +M++LEG E+ + +ASGM A T  L  L+  G  ++     Y  T  F+   + + G+
Sbjct: 71  EARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGV 130

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
               +D AD++ LEAA+      + + ESP NP +   D+  V+ +  K GA V +D T+
Sbjct: 131 KLRHVDMADLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTY 189

Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNP 393
            TP  Q+ L LGADLV+HSATK++ GH D+ AG + GS  LV +IR   L  + G  L+P
Sbjct: 190 CTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSP 249

Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 453
           + A L++RG+KTL+LR+ +  + A  +A+ L   P+V+ +HYPGL S P++ +A QQM+ 
Sbjct: 250 HDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQ 309

Query: 454 FGGVVSFEV 462
            GG+++FE+
Sbjct: 310 PGGMIAFEL 318

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414

 Score =  350 bits (901), Expect = e-118
 Identities = 104/308 (33%), Positives = 160/308 (51%), Gaps = 5/308 (1%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
           + +  G         +     +  TS Y +   A            + Y RYGNPT  V 
Sbjct: 30  VGVRGGMLRSG---FEETAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVF 86

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           EE++  +EGA +    ASGM+A    L AL+ AG  +V     +    +    +LP+ G+
Sbjct: 87  EERLRLIEGAPAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGV 146

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
               +D  D+   E AL+       F E+P+NP    VD+  V++L H  GA V +D  F
Sbjct: 147 QTVFVDGDDLSQWERALSVP-TQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVF 205

Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR-NLHHVLGGALNPN 394
           ATPL Q+   LG D+V++S TK I G   VL G+I G  + +      L    G A++  
Sbjct: 206 ATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAF 265

Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 454
            A+++++G++TL +RVQ  N++A R+A+ L  HP V+ V YP L SHP++ +A +QM+G 
Sbjct: 266 NAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGG 325

Query: 455 GGVVSFEV 462
           G VV+F +
Sbjct: 326 GTVVTFAL 333

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Length = 404

 Score =  349 bits (899), Expect = e-117
 Identities = 101/310 (32%), Positives = 171/310 (55%), Gaps = 7/310 (2%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
             IHA  +  +     A   P+  TS + F    +  +    + + + Y R GNPT   +
Sbjct: 11  ACIHANPQKDQ---FGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNL 67

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           E K++ LE  E+ V  +SGM A    +L ++ AG H+++    Y  T    E  L K GI
Sbjct: 68  EGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGI 127

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK-GAIVCIDGT 334
               I+ A    ++  +  N   + + E+P NP L+ +D++ V    H + G +V  D T
Sbjct: 128 QVDFINTAIPGEVKKHMKPN-TKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNT 186

Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALN 392
           F +P+    +  G D+V+HSATK+I GH DV+AG I G   L+ QIR   +  + G  ++
Sbjct: 187 FCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVIS 246

Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 452
           P+ A+LI RG+ TL++R++ ++  A+++A+ L++HP V++V+YPG + H  H IA +QM 
Sbjct: 247 PHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMR 306

Query: 453 GFGGVVSFEV 462
            +G +++F +
Sbjct: 307 MYGSMITFIL 316

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} PDB: 3qi6_A* Length = 392

 Score =  342 bits (881), Expect = e-115
 Identities = 115/310 (37%), Positives = 168/310 (54%), Gaps = 11/310 (3%)

Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
            + AIH+G R      T A+  P+  +S +       L       R  +EY R GNPT  
Sbjct: 19  ATRAIHSGYRPDP--ATGAVNAPIYASSTFAQDGVGGL-------RGGYEYARTGNPTRT 69

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
            +E  ++A+E A      +SGM+A+   L A++  G H+V   D Y  T   I+ V    
Sbjct: 70  ALEAALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGW 129

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
            +  T +  AD++ + AA+      L + E+PTNP L   D+  ++ L     A V +D 
Sbjct: 130 NVEYTPVALADLDAVRAAIRPT-TRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDN 188

Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALN 392
           TFA+P  Q+ LSLGAD+VLHS TK+IGGH+DV+ G++  + + L      L +  G    
Sbjct: 189 TFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPG 248

Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 452
           P  AYL +RG+KTL LR+Q+ +  A  +A+ L  HP +  V YPGL SHP H +A +QM 
Sbjct: 249 PFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMR 308

Query: 453 GFGGVVSFEV 462
           GFGG+VS  +
Sbjct: 309 GFGGMVSVRM 318

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 Length = 386

 Score =  339 bits (873), Expect = e-114
 Identities = 98/310 (31%), Positives = 159/310 (51%), Gaps = 12/310 (3%)

Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
            ++A+ +G           +  P+  +S Y F    E          + +Y R GNPT  
Sbjct: 6   ATIAVRSGLNDDE--QYGCVVPPIHLSSTYNFTGFNEP--------RAHDYSRRGNPTRD 55

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
           VV+  ++ LEG    V+  +GMSA  ++    +  G  +V   DCY  +    +++  + 
Sbjct: 56  VVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRG 115

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
                 +D  D + L AAL      L   ESP+NP LR VD+  +  L  + GA+  +D 
Sbjct: 116 CYRVLFVDQGDEQALRAALAEK-PKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDN 174

Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALN 392
           TF +P  Q  L+LGADLVLHS TK++ GH+DV+AG +      +VT++    + +G    
Sbjct: 175 TFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGG 234

Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 452
              +YL++RG++TL  R++     A  + K L+  P VK++++P L  +  H IA +Q  
Sbjct: 235 AFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQK 294

Query: 453 GFGGVVSFEV 462
           GFG ++SFE+
Sbjct: 295 GFGAMLSFEL 304

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} PDB: 3e6g_A* 3nnp_A* Length = 400

 Score =  331 bits (850), Expect = e-110
 Identities = 116/312 (37%), Positives = 178/312 (57%), Gaps = 15/312 (4%)

Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
            +LAIH G+       T A+  P+  TS Y      E           FEY R  NPT  
Sbjct: 21  ATLAIHGGQSPDP--STGAVMPPIYATSTYAQSSPGE--------HQGFEYSRTHNPTRF 70

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK- 272
             E  ++ALEG       ASGM+A++  ++ L+ AG H+V   D Y  T    E V  + 
Sbjct: 71  AYERCVAALEGGTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRT 129

Query: 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 332
            G+  + +D  D    +AA+  +   + + E+PTNP L+ VD+  ++ +  K G +  +D
Sbjct: 130 AGLDFSFVDLTDPAAFKAAIRAD-TKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVD 188

Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS--ISGSGKLVTQIRNLHHVLGGA 390
            TFA+P+ Q+ LSLGADLV+HSATK++ GH+D++ G   +  + +L  Q+  L + +GG 
Sbjct: 189 NTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGV 248

Query: 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQ 450
             P  ++L +RG+KTL LR++     AL +A+ LE HP +++V YPGL SHP+H +A +Q
Sbjct: 249 QGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQ 308

Query: 451 MTGFGGVVSFEV 462
           M+GFGG+VS  +
Sbjct: 309 MSGFGGIVSIVL 320

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B Length = 403

 Score =  331 bits (850), Expect = e-110
 Identities = 103/311 (33%), Positives = 180/311 (57%), Gaps = 13/311 (4%)

Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
            + AIH G+       + A+  P+  ++ +      +         + FEY R GNPT  
Sbjct: 20  ATQAIHVGQD-PEQWTSRAVVPPISLSTTFKQGAPGQ--------HSGFEYSRSGNPTRN 70

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
            +E+ ++AL+GA+  +  ASG++A+   +  L+ AG  I+   D Y  T  +   V  + 
Sbjct: 71  CLEKAVAALDGAKYCLAFASGLAATVT-ITHLLKAGDQIICMDDVYGGTNRYFRQVASEF 129

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-AIVCID 332
           G+  + +D + ++ LEAA+      L + E+PTNP  + +D++  + + HK G  I+ +D
Sbjct: 130 GLKISFVDCSKIKLLEAAITPE-TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVD 188

Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGAL 391
            TF +P  Q+ L+LGAD+ ++SATK++ GH+DV+ G +S + + L  ++R L + LG   
Sbjct: 189 NTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVP 248

Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM 451
           +P   YL  RG+KTLH+R+++     + +A+ LE++P V++V YPGL SHP+H +  +Q 
Sbjct: 249 SPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQC 308

Query: 452 TGFGGVVSFEV 462
           TG  G+V+F +
Sbjct: 309 TGCTGMVTFYI 319

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 Length = 464

 Score =  328 bits (843), Expect = e-108
 Identities = 104/322 (32%), Positives = 175/322 (54%), Gaps = 18/322 (5%)

Query: 142 DLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRAS 201
           ++K EAS      +L ++   +       DA++TP+  T+ +      E           
Sbjct: 80  NIKEEASV----STLLVNLDNKFDP---FDAMSTPLYQTATFKQPSAIE--------NGP 124

Query: 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
           ++Y R GNPT   +E  ++ L+ A+      SGM+A +  +  L+  G  IV   D Y  
Sbjct: 125 YDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGG 183

Query: 262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
           +   +  V+P+ G+    ++   ++ + AA+      L + ESPTNP  +  D++ +S++
Sbjct: 184 SDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ-TKLVWLESPTNPRQQISDIRKISEM 242

Query: 322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQI 380
            H +GA+V +D +  +P+  + L LGAD+V+HSATKFI GH+DV+AG ++  G+ L  ++
Sbjct: 243 AHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEV 302

Query: 381 RNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKS 440
             L +  G  L P   +L +RG+KT+ LR+++Q   A ++A  L +HP+VK+V+Y GL  
Sbjct: 303 YFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPD 362

Query: 441 HPEHHIATQQMTGFGGVVSFEV 462
           HP HH+   Q  G G V SF  
Sbjct: 363 HPGHHLHFSQAKGAGSVFSFIT 384

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Length = 393

 Score =  314 bits (806), Expect = e-104
 Identities = 102/317 (32%), Positives = 169/317 (53%), Gaps = 21/317 (6%)

Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
            + AIHAGE +    V  ++  P+  ++ +     A           ++EY R  NP   
Sbjct: 9   ATKAIHAGEHVD---VHGSVIEPISLSTTFKQSSPANP-------IGTYEYSRSQNPNRE 58

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
            +E  ++ALE A+  +  +SG + +   +L  +P G H V+  D Y  T  +   V    
Sbjct: 59  NLERAVAALENAQYGLAFSSGSATTAT-ILQSLPQGSHAVSIGDVYGGTHRYFTKVANAH 117

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA----IV 329
           G+  +  +   +  L   +  N   L + E+PTNP L+  D++ V+DL  K  A    I+
Sbjct: 118 GVETSFTN-DLLNDLPQLIKEN-TKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVIL 175

Query: 330 CIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLG 388
            +D TF +P     L+ GAD+V+HSATK+I GH+DV+ G ++ + K L  +++ L + +G
Sbjct: 176 VVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIG 235

Query: 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK-VKRVHYPGLKSHPEHHIA 447
              +P  A+L  RG+KTLHLRV+Q   +A ++A+ L A  + V  V+YPGLK+HP + + 
Sbjct: 236 AIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVV 295

Query: 448 TQQMTGF--GGVVSFEV 462
            +Q      GG++SF +
Sbjct: 296 LKQHRDALGGGMISFRI 312

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 Length = 331

 Score =  306 bits (786), Expect = e-101
 Identities = 90/252 (35%), Positives = 141/252 (55%), Gaps = 4/252 (1%)

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
            +E K++ LE AE+    ASGM A    +   + AG H+++    Y  T    E  L K 
Sbjct: 2   ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF 61

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCID 332
           G+    ID A    +E  L  N   + + E+P NP L+ +D++       K K  +V +D
Sbjct: 62  GVEVDFIDMAVPGNIEKHLKPN-TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVD 120

Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGA 390
            TFA+P+    L LG D+V+HSATK+I GH DV+AG +     ++ +++   +  + G  
Sbjct: 121 NTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAI 180

Query: 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQ 450
           ++P+ A+LI RG  TL +RV++    A ++A+ L  H  VK+V+YPGL  HP H IA +Q
Sbjct: 181 ISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQ 240

Query: 451 MTGFGGVVSFEV 462
           M  FG +++F+V
Sbjct: 241 MKMFGSMIAFDV 252

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} Length = 430

 Score =  257 bits (660), Expect = 2e-81
 Identities = 93/335 (27%), Positives = 155/335 (46%), Gaps = 38/335 (11%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT---AELIDFKEKRRASFEYGRYGNPTT 212
            A+H  +      V  A+ TPV + +A+ F+ +   A++   +        Y R  NPT 
Sbjct: 30  RALHVPKAKRD--VHGALRTPVYDNAAFEFENSDEIAQVSLGRA---LGHVYSRSSNPTV 84

Query: 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 272
             +E+++  L GA   + + SGM+A +  +L L  AG  +VTT   +  T    +  LP 
Sbjct: 85  EDLEQRLKNLTGALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPS 144

Query: 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 332
            GI    +D  D   +E A +     L F E+ +NP L+  D++ +S + H KG  + +D
Sbjct: 145 FGIEVRFVDVMDSLAVEHACDET-TKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVD 203

Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL---------------- 376
            T   P   +A  LG D+ + S+TKFI G    + G +   G                  
Sbjct: 204 TTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAG 263

Query: 377 ---------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAH 427
                        +N    LG +L+P+ AYL   G++T+ LR+++    A  +A  L + 
Sbjct: 264 PMAFLYKARKEVFQN----LGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSI 319

Query: 428 PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           P+VK V++P L   P + IA +Q    G +++FE+
Sbjct: 320 PQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFEL 354

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Length = 412

 Score =  243 bits (623), Expect = 3e-76
 Identities = 98/343 (28%), Positives = 155/343 (45%), Gaps = 49/343 (14%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT---AELIDFKEKRRASFEYGRYGNPTT 212
           LA+ AG          A+  P+   +AY FK      E     E     + Y R  +PT 
Sbjct: 6   LAVLAGLPEDP---HGAVGLPIYAVAAYGFKTLEEGQERFATGE----GYVYARQKDPTA 58

Query: 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 272
             +EE++ ALEGA   V++ASG +A+   LLAL+  G  +V     + +T      VL  
Sbjct: 59  KALEERLKALEGALEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSL 118

Query: 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 332
           MG+T   +DP + E +  AL +      F E+  NP L   D++ ++ L  + G  + +D
Sbjct: 119 MGVTVRYVDP-EPEAVREAL-SAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVD 176

Query: 333 GTF-ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL--------------- 376
            TF A     + L+ GA +V+ S TK+  GH  VL G++                     
Sbjct: 177 NTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKG 236

Query: 377 -----------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 419
                               +       G AL+P  AYL+ +G++T+ LRV + + TA  
Sbjct: 237 QIPWEALRARCFPERVRTLGLSL----CGMALSPFNAYLLFQGLETVALRVARMSETARF 292

Query: 420 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
           +A+ L+ HPKVK + YPGL   P H  A + +   G +++ ++
Sbjct: 293 LAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL 335

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 Length = 421

 Score =  238 bits (609), Expect = 5e-74
 Identities = 101/349 (28%), Positives = 155/349 (44%), Gaps = 52/349 (14%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT---AELIDFKEKRRASFEYGRYGNPTT 212
           L +HAG        T +   P+  T++Y FK     A L   KE       Y R  NPT 
Sbjct: 6   LQLHAGYEPEP--TTLSRQVPIYPTTSYVFKSPEHAANLFALKE---FGNIYSRIMNPTV 60

Query: 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 272
            V+E++++ALEG ++ +  ASG +A  + L  L  AG +IV+T + Y  T    +  L +
Sbjct: 61  DVLEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKR 120

Query: 273 MGITATVIDPADM-EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 331
           +GI        +  E   A   +     ++ ES  NP L   D++ ++    +KG  + +
Sbjct: 121 LGIEVRFTSREERPEEFLALT-DEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIV 179

Query: 332 DGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-------------- 376
           D TF       + L+ GA LV HS TK++GGH  V+AG+I   G                
Sbjct: 180 DNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQ 239

Query: 377 ----------------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 414
                                 V  +R+     G AL P  A++++ GM+TL LR ++  
Sbjct: 240 PGYHGLRLTEAFGELAFIVKARVDGLRD----QGQALGPFEAWVVLLGMETLSLRAERHV 295

Query: 415 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT-GFGGVVSFEV 462
              L +A  L   P+V  V+YPGL  HP H  A +      G V++F +
Sbjct: 296 ENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGL 344

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431

 Score =  208 bits (530), Expect = 2e-62
 Identities = 49/282 (17%), Positives = 85/282 (30%), Gaps = 21/282 (7%)

Query: 199 RASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDC 258
              + Y   G  T   V   +   E       + SG  A +  L  ++  G  ++  T  
Sbjct: 57  TTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGK 116

Query: 259 Y-------RKTRIFIETVLPKMGITATVID-----PADMEGLEAALNNNNVSLFFTESP- 305
                      R        +  I    +        D E + AA+++N   +   +   
Sbjct: 117 PYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSN-TKMIGIQRSK 175

Query: 306 ---TNPFLRCVDVKLVSDLCH--KKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI 359
              T P      +K +       K   +V +D  +   +  Q+   +GADL+  S  K  
Sbjct: 176 GYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNP 235

Query: 360 GGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 419
           GG      G I G  + V          G      A+   ++ M             AL+
Sbjct: 236 GGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALK 295

Query: 420 MAKILEAH-PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF 460
            A    A   K+     P   +     I + Q      +++F
Sbjct: 296 GAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDKDRMIAF 337

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Length = 427

 Score =  190 bits (484), Expect = 8e-56
 Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 31/286 (10%)

Query: 201 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIV------- 253
            + Y   G  +   V   +   E A       +G  A    L   +     ++       
Sbjct: 68  GYGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPY 127

Query: 254 -TTTDCYRKTRIFIETVLPKMGITATVID----PADMEGLEAALN-NNNVSLFFTESPTN 307
            T  D            L + G+   ++D      D+  ++  L  ++++ L   +  T 
Sbjct: 128 DTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTG 187

Query: 308 ----PFLRCVDVKLVSDLCH--KKGAIVCIDGTFATPLNQKA-LSLGADLVLHSATKFIG 360
                 LR  ++  +        +  IV +D  +   + +K    +GAD++  S  K IG
Sbjct: 188 YGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIG 247

Query: 361 GHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRM 420
           G      G I+G  + VTQ      V G      + + ++R +             A++ 
Sbjct: 248 GGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVTIEAVKG 307

Query: 421 AKILEAHPKVKRVHYPGLKSHPEHH------IATQQMTGFGGVVSF 460
           A       ++      G    P+++      I   +      ++ F
Sbjct: 308 AVFCARIMEL-----AGFDVLPKYNDKRTDIIQAIKFNDEKKLIDF 348

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374

 Score =  187 bits (477), Expect = 2e-55
 Identities = 50/288 (17%), Positives = 91/288 (31%), Gaps = 34/288 (11%)

Query: 194 FKEKRRASFEYGRYGNPTTVVVEEKMSAL-------EGAESTVIMASGMSASTVMLLALV 246
           F    +       Y   +     EK++         +  +  V      SA    +LAL 
Sbjct: 40  FLIDEKDKALLNTYIGSS--YFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK 97

Query: 247 PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPT 306
           P    I    +      I     +    + A   +   +  +   ++ +   +  T S  
Sbjct: 98  P-KKVIHYLPELPGHPSIERSCKI----VNAKYFESDKVGEILNKIDKD-TLVIITGSTM 151

Query: 307 N-PFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIG 360
           +   +   + K V +    K AIV +D      +        AL LGADLV+ S  K + 
Sbjct: 152 DLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLME 211

Query: 361 GHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL-RVQQQNSTALR 419
           G      G ++G  +LV +I       G    P     I R +K  +L R+++    A  
Sbjct: 212 GP---RGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKN 268

Query: 420 MA----KILEAHPK-VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462
                 + L    K +        +  P   +  +         +  +
Sbjct: 269 FDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVY----KDDTINI 312

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427

 Score =  177 bits (450), Expect = 7e-51
 Identities = 49/279 (17%), Positives = 98/279 (35%), Gaps = 26/279 (9%)

Query: 187 KTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV 246
           +   + +      + + YG  G  +   V  ++   E A       +G  A    L   +
Sbjct: 53  QEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNL 112

Query: 247 PAGGHIV--------TTTDCYRKTRIFIETVLPKMGITATVID-----PADMEGLEAALN 293
             G  ++        T  D    T       L + GI    +D       ++E +E  L 
Sbjct: 113 RPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLK 172

Query: 294 NN-NVSLFFTESPTN----PFLRCVDVKLVSDLCH--KKGAIVCIDGTFATPLN-QKALS 345
            + +++L   +  T       L   D+K + D     +K  I  +D  +   ++ ++   
Sbjct: 173 EDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTD 232

Query: 346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT 405
           +GADL+  S  K IGG      G ++G+   + +      V G      + + ++R M  
Sbjct: 233 VGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQ 292

Query: 406 LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEH 444
                   +  AL+ A +         +   G +  P++
Sbjct: 293 GLFLAPHISMEALKGAILCSRI-----MELAGFEVMPKY 326

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Length = 409

 Score =  154 bits (391), Expect = 2e-42
 Identities = 42/270 (15%), Positives = 77/270 (28%), Gaps = 37/270 (13%)

Query: 201 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIV------- 253
            + Y   G  T   V   +   E A     + SG  A + +L  ++     ++       
Sbjct: 53  GYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPY 112

Query: 254 -TTTDCYRKTRIFIETVLPKMGITATVID-----PADMEGLEAALNNNNVSLFFTES--- 304
            T  +     +    + L    I  + +        D   +   +      +    S   
Sbjct: 113 DTLEEIVGIRKQGQGS-LKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGY 171

Query: 305 PTNPFLRCVDVKLVSDLCHKKG--AIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGG 361
              P      +K +           IV +D  +   +  Q+   +GAD++  S  K  GG
Sbjct: 172 ADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGG 231

Query: 362 HNDVLAGSISGSGKLVTQIRN------LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNS 415
                 G I+G   LV           +    G +L       + +G         Q   
Sbjct: 232 GLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSL--LEMYQGFFLAPHVTAQAIK 289

Query: 416 TALRMAKILEAHPKVKRVHYPGLKSHPEHH 445
            A   A +L            G+++ P   
Sbjct: 290 GARFTAAMLAEF---------GVEADPVWD 310

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 8e-10
 Identities = 54/452 (11%), Positives = 119/452 (26%), Gaps = 148/452 (32%)

Query: 62  RFPPNFV-R-QLSTKARRNCSNIGVAQIVAASWSNSV----GSGSNSAAATAASAAP--- 112
            F    V R Q   K R+    +  A+ V       +    GSG    A     +     
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVL------IDGVLGSGKTWVALDVCLSYKVQC 178

Query: 113 APPAPVE-ITSG---DDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAG-ERLGRG 167
                +  +          +++ L+ +  +   +  + +   SS+  L IH+    L R 
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRL 237

Query: 168 ----------IVTDAITTPVVNTSAYFFKKTAELIDFKEK-----RRAS-FEYGRYGNPT 211
                     +V   +             K     +   K     R     ++      T
Sbjct: 238 LKSKPYENCLLVLLNVQNA----------KAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 212 TVVVEEKMSALEGAESTVIMAS--GMSASTV---------MLLALVPAGGHI-VTTTDCY 259
            + ++     L   E   ++          +           L+++       + T D +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 260 RKTRIFIETVLPKMGITATVIDPADMEGL--EAALNNNNV-------SLFFTESPTNPFL 310
           +   +  + +   +  +  V++PA+   +    ++   +        SL + +   +   
Sbjct: 348 KH--VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS--- 402

Query: 311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI 370
              DV +V +  HK   +             K  ++                        
Sbjct: 403 ---DVMVVVNKLHKYSLVEK---------QPKESTIS----------------------- 427

Query: 371 SGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKV 430
                       +  +                   L L+V+ +N  AL    I++ +   
Sbjct: 428 ------------IPSIY------------------LELKVKLENEYALH-RSIVDHYNIP 456

Query: 431 KRVHYPGLK---------SHPEHHIATQQMTG 453
           K      L          SH  HH+   +   
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 23/158 (14%), Positives = 55/158 (34%), Gaps = 16/158 (10%)

Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +  ++    G +   +      A   ++ +L      +V   +C+  + +  E    + G
Sbjct: 59  IHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE----RAG 114

Query: 275 ITATVIDPAD-------MEGLEAALNNN----NVSLFFTESPTNPFLRCVDVKLVSDLCH 323
           +   ++   D        E     +        V L     P   +    DVK ++ +C 
Sbjct: 115 LNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCS 174

Query: 324 KKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIG 360
           +    + ++G +A   +      +GAD ++ S  K + 
Sbjct: 175 EYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMA 212

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Length = 755

 Score = 43.9 bits (103), Expect = 9e-05
 Identities = 28/182 (15%), Positives = 56/182 (30%), Gaps = 38/182 (20%)

Query: 216 EEKMSALEGAESTVIMASGMSAS-TVMLLALVPAGGHIVTTTDCYRKTR----------I 264
           E+  + + GA+ +  +  G S S   ++ A +     +V   +C++             +
Sbjct: 211 EKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPV 270

Query: 265 FIETVLPKMGITATVIDPADM--EGLEAALNNN---------NVSLFFTESPTNPFLRCV 313
           ++     + GI    I P +M  E L+  ++ +           S     + T     C 
Sbjct: 271 YMVPSRNRYGIIGP-IYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCY 328

Query: 314 DVKLVSDLCHKKGAIVCID--------------GTFATPLNQKALSLGADLVLHSATKFI 359
           + K   DL  K    +  D                +A        +       HS  K +
Sbjct: 329 NAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL 388

Query: 360 GG 361
             
Sbjct: 389 NA 390

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 27/171 (15%)

Query: 209 NPTTVVVE-EKMSALEGAESTVIMASGMSAS-TVMLLALVPAGGHIVTTTDCYRKTR--- 263
           +P  V+++  K            + +G ++    ++ +     G I+   + ++      
Sbjct: 54  HPEEVILKSMKQVEKHSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHAL 113

Query: 264 -------IFIET-VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV 315
                   FIET   P       V          + LNN+   L     P   +    +V
Sbjct: 114 DISQQEGHFIETHQSPLTNHYNKV--------NLSRLNNDGHKLVVLTYPN-YYGETFNV 164

Query: 316 KLVSDLCHKKGAIVCID---GTFAT--PLNQKALSLGADLVLHSATKFIGG 361
           + V    H+    V ID   G            L+  AD V+ S  K +  
Sbjct: 165 EEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPA 215

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* Length = 715

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 19/173 (10%), Positives = 50/173 (28%), Gaps = 29/173 (16%)

Query: 216 EEKMSALEGAESTVIMASGMSAS-TVMLLALVPAGGHIVTTTDCYR----------KTRI 264
           E+ ++ +  A+ + ++ +G S +  ++ +   PAG  I+   +C++           T I
Sbjct: 201 EQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPI 260

Query: 265 FIETVLPKMGITATVIDPADMEG------LEAALNNNNVSLFFTESPTNPFLRCVDVKLV 318
           +        GI    I  ++ +       ++   N          + T       +   +
Sbjct: 261 YFRPTRNAYGI-LGGIPQSEFQHATIAKRVKETPNATWPVHAVITNST-YDGLLYNTDFI 318

Query: 319 SDLCHKKGAIV-CIDGTFA---------TPLNQKALSLGADLVLHSATKFIGG 361
                 K          +            ++   +         S  K +  
Sbjct: 319 KKTLDVKSIHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA 371

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* Length = 730

 Score = 40.8 bits (95), Expect = 8e-04
 Identities = 23/182 (12%), Positives = 48/182 (26%), Gaps = 37/182 (20%)

Query: 216 EEKMSALEGAESTVIMASGMSAS-TVMLLALVPAGGHIVTTTDCYRKTR----------- 263
           E+  + +  A+ T  +  G S +   +  ALV  G  ++   + ++              
Sbjct: 179 EKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRP 238

Query: 264 IFIETVLPKMGITATVIDPADME----------GLEAALNNNNVSLFFTESPTNPFLRCV 313
           ++++T     G    + D    E            E A       L   +  T       
Sbjct: 239 VYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT-YDGTIY 297

Query: 314 DVKLVSDLCHKKGAIVCID--------------GTFATPLNQKALSLGADLVLHSATKFI 359
           +   V          +  D               +    ++         +V+ S  K  
Sbjct: 298 NAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ 357

Query: 360 GG 361
            G
Sbjct: 358 AG 359

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	466
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	100.0
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	100.0
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	100.0
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	100.0
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	100.0
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	100.0
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	100.0
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	100.0
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	100.0
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	100.0
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	100.0
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	100.0
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	100.0
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	100.0
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	100.0
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	100.0
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	100.0
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	100.0
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	100.0
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	100.0
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.95
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.93
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.92
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.92
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.92
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.92
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.92
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.92
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.92
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.92
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.92
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.92
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.91
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.91
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.91
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.91
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.91
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.91
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.91
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.91
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.91
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.91
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.91
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.9
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.9
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.9
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.9
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.9
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.9
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.9
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.9
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.9
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.9
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.9
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.9
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.9
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.9
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.9
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.9
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.9
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.9
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.9
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.9
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.9
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.89
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.89
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.89
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.89
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.89
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.89
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.89
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.89
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.89
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.89
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.89
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.89
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.89
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.89
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.89
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.89
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.89
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.89
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.88
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.88
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.88
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.88
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.88
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.88
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.88
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.88
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.88
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.88
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.88
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.88
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.87
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.87
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.87
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.87
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.87
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.87
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.87
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.87
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.87
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.87
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.87
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.87
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.87
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.87
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.87
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.87
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.87
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.87
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.86
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.86
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.86
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.86
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.86
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.86
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.86
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.86
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.86
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.86
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.85
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.85
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.85
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.85
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.85
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.85
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.85
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.85
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.85
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.85
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.84
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.84
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.84
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.84
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.84
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.84
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.84
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.84
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.84
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.84
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.83
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.83
1svv_A	359	Threonine aldolase; structural genomics, structura	99.83
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.83
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.83
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.83
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.83
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.83
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.83
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.83
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.83
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.83
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.83
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.83
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.82
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.82
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.82
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.82
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.82
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.81
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.81
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.81
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.81
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.81
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.81
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.81
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.81
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.81
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.8
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.8
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.8
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.79
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.79
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.79
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.79
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.79
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.79
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.79
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.66
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.78
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.78
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.78
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.78
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.78
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.78
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.78
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.77
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.77
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.77
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.77
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.76
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.76
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.76
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.76
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.76
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.75
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.75
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.75
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.75
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.75
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.75
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.75
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.75
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.74
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.74
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.74
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.74
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.73
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.73
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.73
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.73
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.73
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.73
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.73
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.73
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.72
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.72
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.72
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.71
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.7
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.69
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.64
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.43
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.6
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.59
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.53
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.52
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.5
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.48
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.44
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.42
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.38
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.35
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.15

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=100.00  E-value=6e-52  Score=436.56  Aligned_cols=320  Identities=86%  Similarity=1.277  Sum_probs=294.4

Q ss_pred             hhccccCCCcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhh
Q 012296          144 KNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALE  223 (466)
Q Consensus       144 ~~~~~~~~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~  223 (466)
                      .++++|++..+|++||+|+.+++...++++.+|||+|+||.|++.++..+.+.++..+|.|+|+++|+.+++|++|++++
T Consensus        48 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~Pi~~t~t~~~~~~~~~~~~~~~~~~~~~y~r~~~~~~~~l~~~lA~l~  127 (445)
T 1qgn_A           48 MKYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALE  127 (445)
T ss_dssp             -CCCTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHH
T ss_pred             ccccccCCCcccEEEecCCCCCcCCCCCCcCCCcccCCceecCCHHHHHhhhccccCCccccCCCChHHHHHHHHHHHHh
Confidence            36677776559999999987531145889999999999999999988777777777789999999999999999999999


Q ss_pred             CCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCc-eEEEE
Q 012296          224 GAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNV-SLFFT  302 (466)
Q Consensus       224 g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~t-klV~l  302 (466)
                      |+++.++++||++|+.+++.+++++||+||++++.|++++..+...++..|+++++++..|+++|+++++++ + ++|++
T Consensus       128 g~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~-tv~lV~l  206 (445)
T 1qgn_A          128 GAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQK-KVNLFFT  206 (445)
T ss_dssp             TCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHS-CEEEEEE
T ss_pred             CCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccC-CCCEEEE
Confidence            999999999999999999999999999999999999998877766677889999999988999999999875 7 99999


Q ss_pred             eCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHH
Q 012296          303 ESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN  382 (466)
Q Consensus       303 esP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~  382 (466)
                      |+|+||+|.+.|+++|+++|+++|+++|+|++|+.++...++.+|+|++++|+||+++|++++++|+++++++++++++.
T Consensus       207 e~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~  286 (445)
T 1qgn_A          207 ESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRN  286 (445)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHH
T ss_pred             eCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHH
Confidence            99999999999999999999999999999999998877778888999999999999999998889999999999999988


Q ss_pred             HHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEe
Q 012296          383 LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV  462 (466)
Q Consensus       383 ~~~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel  462 (466)
                      .+..+|+.++++.+|+++++++++..|++++.+++++++++|+++|+|.+|+||++++||+|+++++|++|+|+|++|++
T Consensus       287 ~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l  366 (445)
T 1qgn_A          287 LHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEV  366 (445)
T ss_dssp             HHHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEE
T ss_pred             HHHHhCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEE
Confidence            88888988999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc
Q 012296          463 LM  464 (466)
Q Consensus       463 ~~  464 (466)
                      ++
T Consensus       367 ~~  368 (445)
T 1qgn_A          367 DG  368 (445)
T ss_dssp             SS
T ss_pred             CC
Confidence            75

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=100.00  E-value=6e-53  Score=442.26  Aligned_cols=310  Identities=30%  Similarity=0.468  Sum_probs=245.6

Q ss_pred             CCcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 012296          151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (466)
Q Consensus       151 ~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~  230 (466)
                      ++++|++||+|+.+  +..+++++||||+|+||.|++.+++.+.+.+...+|.|+|+++|+.++||++|++++|.+.+++
T Consensus        25 ~~~~t~~~h~~~~~--~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v~  102 (430)
T 3ri6_A           25 RGFTTRALHVPKAK--RDVHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALGVLA  102 (430)
T ss_dssp             CCHHHHHHCCC----------------------------------------------CCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCcchhheeCCCCC--CCCCCCcCCCcccccccccCCHHHHHHHhhcccCCccccCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            35899999999765  3458899999999999999999887777777777899999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCc
Q 012296          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (466)
Q Consensus       231 ~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG  310 (466)
                      ++||++|+.+++.+++++||+|+++++.|+++...+...+...|+++.+++..|+++|+++++++ +++|++|+|+||+|
T Consensus       103 ~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~~-t~~v~~e~p~NptG  181 (430)
T 3ri6_A          103 LGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDET-TKLLFLETISNPQL  181 (430)
T ss_dssp             ESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCTT-EEEEEEESSCTTTC
T ss_pred             ECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCCC-CeEEEEECCCCCCC
Confidence            99999999999999999999999999999998887766777889999999999999999999885 99999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEe--CHHH------------
Q 012296          311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG--SGKL------------  376 (466)
Q Consensus       311 ~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg--~~el------------  376 (466)
                      .+.|+++|+++|+++|+++|+|++|+.+..+++..+|+|++++|+||+++|+|+++||+++.  +.++            
T Consensus       182 ~~~dl~~i~~la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~  261 (430)
T 3ri6_A          182 QVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAK  261 (430)
T ss_dssp             CCCCHHHHHHHHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHH
T ss_pred             eecCHHHHHHHHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhh
Confidence            99999999999999999999999999988888999999999999999999999999999994  3222            


Q ss_pred             ------HHHHHH-HHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHh
Q 012296          377 ------VTQIRN-LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQ  449 (466)
Q Consensus       377 ------i~~l~~-~~~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~  449 (466)
                            +.+++. ....+|..++++.+|+++++++++..|++++.+|+++++++|+++|.|++|+||+|++||+|+++++
T Consensus       262 ~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~  341 (430)
T 3ri6_A          262 AGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKR  341 (430)
T ss_dssp             HGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHH
T ss_pred             hchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHH
Confidence                  333332 3456788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCcce-EEEEEecc
Q 012296          450 QMTGFGG-VVSFEVLM  464 (466)
Q Consensus       450 ~~~g~Gg-~vsfel~~  464 (466)
                      || |+|| |++|++++
T Consensus       342 ~~-g~Gg~~lsf~l~~  356 (430)
T 3ri6_A          342 QF-RYAGSILTFELES  356 (430)
T ss_dssp             HC-SSCCSEEEEECSS
T ss_pred             hC-CCCceEEEEEECC
Confidence            99 9999 99999974

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3.7e-51  Score=426.32  Aligned_cols=309  Identities=34%  Similarity=0.551  Sum_probs=288.8

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|++||+|..+   +.++++.+|||+|++|.|++.+++.+.+.++..+|.|+|+++|+.++|++++++++|.++++++
T Consensus        26 ~~~t~~~~~~~~~---~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~~~g~~~~~~~  102 (414)
T 3ndn_A           26 SQATVGVRGGMLR---SGFEETAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFAT  102 (414)
T ss_dssp             CHHHHHHHTTCCC---CTTCBSSCCBCCCSBBCCSSHHHHHHHHTTSSCCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccceeeecCCCC---CCCCCcCCCcccCCceecCChHHHHHHHhCCcCCcCcCCCCChHHHHHHHHHHHHHCCCcEEEE
Confidence            5899999999774   2478999999999999999998888888887788999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +||++|+.+++.+++++||+|+++++.|+++...+...+...|+++.+++..|+++|+++++++ +++|++|+|+||+|.
T Consensus       103 ~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai~~~-t~~v~le~p~NptG~  181 (414)
T 3ndn_A          103 ASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVP-TQAVFFETPSNPMQS  181 (414)
T ss_dssp             SSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHTSSC-CSEEEEESSCTTTCC
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCCC-CeEEEEECCCCCCCc
Confidence            9999999999999999999999999999998877766677789999999999999999999885 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHH-HHHHHHHHhCCC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVLGGA  390 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~-~l~~~~~~~G~~  390 (466)
                      +.|+++|+++|+++|++||+|++|+.+....++.+|+|+++.|+||+++++|++++|+++++++.+. .++.....+|..
T Consensus       182 ~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~  261 (414)
T 3ndn_A          182 LVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPA  261 (414)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCC
T ss_pred             cccHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999877777888899999999999999999888999999998876 777777788999


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++++.+|+++++++++..|++++.+|+++++++|+++|.|.+|+||+++++|+|+++++|++|+|+|++|++++
T Consensus       262 ~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~  335 (414)
T 3ndn_A          262 MSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDC  335 (414)
T ss_dssp             CCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999975

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=100.00  E-value=5.2e-51  Score=425.59  Aligned_cols=310  Identities=27%  Similarity=0.463  Sum_probs=288.0

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcc-cCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR-RASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~-~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~  230 (466)
                      +++|++||+|..+  +..++++++|||+|+||.|++.+++.+.+.+. ..+|.|+|+++|+.+++|++||+++|++++++
T Consensus        25 ~~~t~~~~~~~~~--~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~  102 (415)
T 2fq6_A           25 KLDTQLVNAGRSK--KYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVL  102 (415)
T ss_dssp             CHHHHHHHTTCCH--HHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTSCCCTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CcCceeEeCCCCC--CCCCCCEeCCeecccceeeCCHHHHHHhhccccCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Confidence            5789999999764  23478999999999999999998887777655 56799999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCc
Q 012296          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (466)
Q Consensus       231 ~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG  310 (466)
                      +++|++|+.+++.+++++||+||++++.|+++...+...++..|+++++++..|+++|+++|+++ |++|++++|+||+|
T Consensus       103 ~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~le~ai~~~-tklV~~e~~~NptG  181 (415)
T 2fq6_A          103 FPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPN-TKIVFLESPGSITM  181 (415)
T ss_dssp             ESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGGCCTT-EEEEEEESSCTTTC
T ss_pred             eCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhhccC-CcEEEEECCCCCCC
Confidence            99999999999999999999999999999998888776778889999999999999999999885 99999999999999


Q ss_pred             ccccHHHHHHHHHh--cCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhC
Q 012296          311 RCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG  388 (466)
Q Consensus       311 ~v~dl~~Ia~la~~--~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G  388 (466)
                      .+.|+++|+++|++  +|+++|+|++|+.++...++.+|+|++++|+||++++++++++|+++++++++++++..+...|
T Consensus       182 ~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G  261 (415)
T 2fq6_A          182 EVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMG  261 (415)
T ss_dssp             CCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTT
T ss_pred             EeecHHHHHHHHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcC
Confidence            99999999999999  9999999999998877788889999999999999999998889999999988888888777788


Q ss_pred             CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       389 ~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ..++++.+|+++++++++..|++++.+|++.++++|+++|.|.+|+||+++++|+|++++++++|+|+|++|++++
T Consensus       262 ~~~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g  337 (415)
T 2fq6_A          262 QMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKK  337 (415)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS
T ss_pred             CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC
Confidence            8889999999999999999999999999999999999999999999999999999999999999999999999976

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=100.00  E-value=3.3e-50  Score=417.37  Aligned_cols=301  Identities=39%  Similarity=0.666  Sum_probs=277.8

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|++||+|+.+  +..++++++|||++++|.|++.+        ...+|.|+|+++|+.++|+++|++++|.++++++
T Consensus        19 ~~~t~~~~~~~~~--~~~~~~~~~pi~~~s~~~~~~~~--------~~~~~~y~r~~~p~~~~l~~~la~l~g~~~~~~~   88 (400)
T 3nmy_A           19 SLATLAIHGGQSP--DPSTGAVMPPIYATSTYAQSSPG--------EHQGFEYSRTHNPTRFAYERCVAALEGGTRAFAF   88 (400)
T ss_dssp             CHHHHHHHTTCCC--CTTTCBSSCCBCCCSBBBCSBTT--------BSSSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CcchheeeCCCCC--CCCCCCcCCCccccceeeccCcc--------ccCCcccccCCCHHHHHHHHHHHHHhCCCCEEEe
Confidence            5899999999875  34589999999999999998753        3457999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhh-cccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV-LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~-l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG  310 (466)
                      +||++|+.+ +..++++||+|+++++.|++++..+... ++..|+++.+++..|+++|+++++++ +++|++|+|+||+|
T Consensus        89 ~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-~~~v~~e~~~np~G  166 (400)
T 3nmy_A           89 ASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAIRAD-TKMVWIETPTNPML  166 (400)
T ss_dssp             SSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSHHHHHHHCCTT-EEEEEEESSCTTTC
T ss_pred             cCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCHHHHHHHhccC-CCEEEEECCCCCCC
Confidence            999999988 5678899999999999999988777666 67789999999999999999999875 99999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeE-EEE-eCHHHHHHHHHHHHHhC
Q 012296          311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG-SIS-GSGKLVTQIRNLHHVLG  388 (466)
Q Consensus       311 ~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG-~iv-g~~eli~~l~~~~~~~G  388 (466)
                      .+.|+++|+++|+++|+++|+|++|++++...++.+|+|++++|++|+++|++++++| +++ .+++++++++.....+|
T Consensus       167 ~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g  246 (400)
T 3nmy_A          167 KLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIG  246 (400)
T ss_dssp             CCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHC
T ss_pred             eeecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999987777888899999999999999999988889 554 57788899998888899


Q ss_pred             CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       389 ~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ..++++.+|+++++++++..|++++.+|++.++++|+++|.|.+|+||++++||+|+++++|++|+|+|++|+|++
T Consensus       247 ~~~~~~~a~~~l~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~  322 (400)
T 3nmy_A          247 GVQGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKG  322 (400)
T ss_dssp             CBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred             CCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999975

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=100.00  E-value=6e-48  Score=398.20  Aligned_cols=303  Identities=38%  Similarity=0.604  Sum_probs=281.9

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|+|..+  +..++++.+|||++++|.+++.+       +...+|.|+|+++|+.++|+++|++++|.++++++
T Consensus        17 ~~~t~~~~~~~~~--~~~~~~~~~pi~~~~~~~~~~~~-------~~~~~~~y~r~~~~~~~~l~~~la~~~g~~~~~~~   87 (392)
T 3qhx_A           17 GLATRAIHSGYRP--DPATGAVNAPIYASSTFAQDGVG-------GLRGGYEYARTGNPTRTALEAALAAVEDAAFGRAF   87 (392)
T ss_dssp             CHHHHHHHSSCCC--CTTTCBSSCCBCCCSBBCCSSTT-------CCBTTBCBTTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CcchhheeCCCCC--CCCCCCccCCcccCcceEecCcc-------cccCCccccCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence            4799999999875  34588999999999999998753       23457999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +||++|+.+++.+++++||+|+++.+.|+++...+...+...|+++.+++..|+++|+++++++ +++|++++|+||+|.
T Consensus        88 ~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~  166 (392)
T 3qhx_A           88 SSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRPT-TRLIWVETPTNPLLS  166 (392)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTT-EEEEEEESSCTTTCC
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHHHHhhCCC-CeEEEEECCCCCCcE
Confidence            9999999999999999999999999999998887777778889999999999999999999885 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhCCC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA  390 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G~~  390 (466)
                      +.|+++|+++|+++|+++|+|++|+.++...+..+|+|++++|+||++++++++++|+++++ +++++.++......|..
T Consensus       167 ~~~l~~i~~la~~~g~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~  246 (392)
T 3qhx_A          167 IADIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAV  246 (392)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCC
T ss_pred             EecHHHHHHHHHHcCCEEEEECCCcccccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999998888888889999999999999999998889999987 68889998888888999


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      .+++.+++++++++++..|++++.++++.++++|+++|.|.+|+||+++++|+|+++++|++|+|+|++|++++
T Consensus       247 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~  320 (392)
T 3qhx_A          247 PGPFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRA  320 (392)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred             CCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999976

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=100.00  E-value=7.6e-47  Score=389.03  Aligned_cols=308  Identities=35%  Similarity=0.577  Sum_probs=284.1

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|+| .   +..++++.+|||+++||.|++.+++.+.+.+...+|.|+|+++|..++|++.|++++|.++++++
T Consensus         5 ~~~t~~~~~~-~---~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~~   80 (389)
T 3acz_A            5 DITTTLLHPK-G---DHVLHSHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAF   80 (389)
T ss_dssp             CHHHHHHSCS-S---CCSTTBSSCCBCCCSBBCCSSHHHHHHHHTTCSSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CcceeEEecC-C---CCCCCCCCCCcccCCceecCChHHHHHhhcCCCCCcccCCCCChHHHHHHHHHHHHhCCCeEEEe
Confidence            4789999999 3   23478999999999999999998888877766678999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +||++|+.+++.+++++||+|+++++.|++++..+...++..|+++.+++..|+++++++++++ +++|++++|+||+|.
T Consensus        81 ~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~  159 (389)
T 3acz_A           81 GSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN-TKMVYLESPANPTCK  159 (389)
T ss_dssp             SSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCHHHHHHTCCTT-EEEEEEESSCTTTCC
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCC-CeEEEEECCCCCCCe
Confidence            9999999999998899999999999999998777665567789999999999999999999875 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCH-HHHHHHHHHHHHhCCC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGA  390 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~-eli~~l~~~~~~~G~~  390 (466)
                      +.|+++|.++|+++|+++|+|++|+.+....++.+++|++++|++|++++++++++|++++++ +++++++.....+|..
T Consensus       160 ~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~  239 (389)
T 3acz_A          160 VSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSL  239 (389)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCC
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999987766777889999999999999999977679999998 9999998877778888


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      .++..+++++++++++..|++++.++++.++++|++++.+.++.||+|+++|++++++++++|+|+|++|++++
T Consensus       240 ~~~~~~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~  313 (389)
T 3acz_A          240 MAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS  313 (389)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS
T ss_pred             CCHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999964

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=100.00  E-value=1.1e-45  Score=383.22  Aligned_cols=301  Identities=35%  Similarity=0.603  Sum_probs=265.7

Q ss_pred             CcccceeccCCcCCCCCCC-CcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 012296          152 SDGSLAIHAGERLGRGIVT-DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~-~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~  230 (466)
                      +++|+++|+|...+  ..+ +++.+|||+++||.+++..+        ..+|.|+|++||+..+||+.|++++|.++.++
T Consensus        18 ~~~t~~~h~g~~~~--~~~~~~~~~pi~~stt~~~~~~~~--------~~~~~y~r~~~p~~~~l~~~la~~~g~~~~i~   87 (403)
T 3cog_A           18 HFATQAIHVGQDPE--QWTSRAVVPPISLSTTFKQGAPGQ--------HSGFEYSRSGNPTRNCLEKAVAALDGAKYCLA   87 (403)
T ss_dssp             THHHHHHHTTCCGG--GSTTCBSSCCBCCCSCBCCC----------------------CHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CcccEEEeCCCCCC--cCCCCCccCCeeccceeecCCccc--------cCCCcccCCCCchHHHHHHHHHHHhCCCcEEE
Confidence            47899999997642  246 89999999999999987532        13588999999999999999999999989999


Q ss_pred             eCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCc
Q 012296          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (466)
Q Consensus       231 ~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG  310 (466)
                      ++||++|+.+++. ++++||+|+++++.|++++..+...++..|+++.+++..|+++|+++++++ +++|++++|+||+|
T Consensus        88 ~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~-t~~v~~~~p~nptG  165 (403)
T 3cog_A           88 FASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPE-TKLVWIETPTNPTQ  165 (403)
T ss_dssp             ESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHHHHCCTT-EEEEEEESSCTTTC
T ss_pred             ECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCcC-CeEEEEECCCCCCC
Confidence            9999999999998 899999999999999998877766677889999999988999999999875 99999999999999


Q ss_pred             ccccHHHHHHHHHhcC-CEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhC
Q 012296          311 RCVDVKLVSDLCHKKG-AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG  388 (466)
Q Consensus       311 ~v~dl~~Ia~la~~~g-illIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G  388 (466)
                      .+.|+++|+++|+++| +++|+|++|+.+....++.+++|++++|+||+++|++++++|+++++ ++++++++.....+|
T Consensus       166 ~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g  245 (403)
T 3cog_A          166 KVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLG  245 (403)
T ss_dssp             CCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHC
T ss_pred             eeeCHHHHHHHHHHcCCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcC
Confidence            9999999999999999 99999999998876677788999999999999999988778999984 789899988888888


Q ss_pred             CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       389 ~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ...+++.+++++++++++..|++++.+|++.++++|+++|.|+++.||+|+++|++++++++++|+|+|++|++++
T Consensus       246 ~~~~~~~~~~~~~~l~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~  321 (403)
T 3cog_A          246 AVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKG  321 (403)
T ss_dssp             CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS
T ss_pred             CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecC
Confidence            8889999999999999999999999999999999999999999999999999999999999999999999999974

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=100.00  E-value=1.1e-44  Score=377.29  Aligned_cols=310  Identities=30%  Similarity=0.439  Sum_probs=273.8

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|+|...+  ..++++.+|||+|+||.+++.++..+.+.++..+|.|+|+.+|..++++++|++++|.+.++++
T Consensus         2 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~v~~   79 (421)
T 2ctz_A            2 RFETLQLHAGYEPE--PTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALAT   79 (421)
T ss_dssp             CHHHHHHHTTCCCC--TTTCBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CcceeeeeCCCCCC--cCCCCccCCeeccceeeeCCHHHHHHhhccccCCCcccCCCChHHHHHHHHHHHHhCCCceEEe
Confidence            36799999997652  3478999999999999999998887777666678999999999999999999999999889999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe-CCCCHHHHHHhhcCCCceEEEEeCCCCCCc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI-DPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v-d~~Dle~Le~ai~~~~tklV~lesP~NPtG  310 (466)
                      +||++|+.+++.+++++||+|+++.+.|+++...+...+...|+++.++ +..|+++|+++++++ +++|++++|+||+|
T Consensus        80 ~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~n~~G  158 (421)
T 2ctz_A           80 ASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEK-TRAWWVESIGNPAL  158 (421)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTT-EEEEEEESSCTTTC
T ss_pred             cCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHhhccC-CeEEEEECCCCCCC
Confidence            9999999999999999999999999999998776655556789999999 888999999999875 99999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEeCCC-CCCCcccccccCCcEEEECCccccCccccceeEEEEeC--HHH----HHHHH--
Q 012296          311 RCVDVKLVSDLCHKKGAIVCIDGTF-ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS--GKL----VTQIR--  381 (466)
Q Consensus       311 ~v~dl~~Ia~la~~~gillIvDea~-a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~--~el----i~~l~--  381 (466)
                      .+.|+++|.++|+++|+++|+|+++ +.++...++..++|++++|++|+++++++.+||+++.+  +++    ++.++  
T Consensus       159 ~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~  238 (421)
T 2ctz_A          159 NIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEP  238 (421)
T ss_dssp             CCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSC
T ss_pred             cccCHHHHHHHHHHcCCEEEEECCcccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccc
Confidence            9999999999999999999999999 76665677788999999999999999987778888873  222    11111  


Q ss_pred             -----------------------H-HHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCC
Q 012296          382 -----------------------N-LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPG  437 (466)
Q Consensus       382 -----------------------~-~~~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPg  437 (466)
                                             . ....+|..++++.+|+++++++++..|++++.++++++.++|+++|+|+.+.||+
T Consensus       239 ~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~  318 (421)
T 2ctz_A          239 QPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPG  318 (421)
T ss_dssp             BGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTT
T ss_pred             cchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCC
Confidence                                   0 1234677889999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHhhc-CCcceEEEEEecc
Q 012296          438 LKSHPEHHIATQQM-TGFGGVVSFEVLM  464 (466)
Q Consensus       438 l~s~p~~~~~~~~~-~g~Gg~vsfel~~  464 (466)
                      ++++|+|+++++++ +|+|+|++|++++
T Consensus       319 ~~~~~~~~~~~~~~~~~~g~ivsf~l~~  346 (421)
T 2ctz_A          319 LPHHPHHDRAQKYFKGKPGAVLTFGLKG  346 (421)
T ss_dssp             STTCTTHHHHHHHHTTCCCSEEEEEETT
T ss_pred             CCCCCCHHHHHHhccCCCceEEEEEeCC
Confidence            99999999999999 7999999999975

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=100.00  E-value=4.4e-44  Score=368.96  Aligned_cols=310  Identities=35%  Similarity=0.547  Sum_probs=248.1

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|+|..+  +..++++.+|+|+++||.+++..+....+.++..+|.|+|+++|..+++++.+++++|.++++++
T Consensus         9 ~~~t~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~~~i~~   86 (398)
T 1gc0_A            9 GFATRAIHHGYDP--QDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL   86 (398)
T ss_dssp             CHHHHHHHTTCCG--GGGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CcCceeEeCCCCC--CCCCCCcCCCccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence            5789999999764  23478999999999999999887666556666678999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +||++|+..++.+++++||+|+++++.|+++...+...+...|+++.+++..|+++++++++++ +++|++++|+||+|.
T Consensus        87 ~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~  165 (398)
T 1gc0_A           87 ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPA-TRVIYFESPANPNMH  165 (398)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTT-EEEEEEESSCTTTCC
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCC-CeEEEEECCCCCCcc
Confidence            9999999999999999999999999999998777655567789999999988999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHH-HHHHHHHH-hCC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHV-LGG  389 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~-~l~~~~~~-~G~  389 (466)
                      +.|+++|.++|+++|+++|+|++|+.+....++.+++|+++.|+||+++++++.++|++++++++++ .++..... +|+
T Consensus       166 ~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~  245 (398)
T 1gc0_A          166 MADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGA  245 (398)
T ss_dssp             CCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCC
T ss_pred             cccHHHHHHHHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCC
Confidence            9999999999999999999999998766556677899999999999999998777899999988766 56666665 778


Q ss_pred             CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       390 ~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      .+++..+++++++++++..|++++.+|++.+.++|+++|.+.+++||+|+++|+++++.+++++.|+|++|++++
T Consensus       246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  320 (398)
T 1gc0_A          246 VLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG  320 (398)
T ss_dssp             CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT
T ss_pred             CCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC
Confidence            889999999999999999999999999999999999999999999999999999999999999999999999974

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=100.00  E-value=1.6e-42  Score=358.99  Aligned_cols=309  Identities=32%  Similarity=0.554  Sum_probs=278.1

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|+|.. +  ..++++.+|+|.++++.++...+..+.+.++...|.|++.++|..++|++.+++++|.++++++
T Consensus         7 ~~~t~~~~~~~~-~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~l~~~ia~~~g~~~~i~~   83 (404)
T 1e5e_A            7 TPATACIHANPQ-K--DQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVAT   83 (404)
T ss_dssp             CHHHHHHHSSCC-C--CTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccceeeecCCC-C--CCCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccCCcChHHHHHHHHHHHHhCCCcEEEe
Confidence            368999999975 2  2368999999999999999987666656566678999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      ++|++|+.+++.+++++||+|+++++.|+++...+...++..|+++.+++..|+++|+++++++ +++|++++|+||+|.
T Consensus        84 ~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-t~~v~l~~p~NptG~  162 (404)
T 1e5e_A           84 SSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPN-TKIVYFETPANPTLK  162 (404)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTT-EEEEEEESSCTTTCC
T ss_pred             CChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCC-CcEEEEECCCCCCCc
Confidence            9999999999999999999999999999998776555567789999999988999999999875 999999999999999


Q ss_pred             cccHHHHHHHHHh-cCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHH-HHHHHHHHh-C
Q 012296          312 CVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVL-G  388 (466)
Q Consensus       312 v~dl~~Ia~la~~-~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~-~l~~~~~~~-G  388 (466)
                      +.|+++|+++|++ +|+++|+|++|+.+....++.+|+|+++.|+||++++++++++|++++++++++ +++.....+ |
T Consensus       163 v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g  242 (404)
T 1e5e_A          163 IIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITG  242 (404)
T ss_dssp             CCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCC
T ss_pred             ccCHHHHHHHHHhhcCCEEEEECCCchhhhCCccccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCC
Confidence            9999999999999 999999999999876656677899999999999999998765799999999888 787766655 7


Q ss_pred             CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       389 ~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ...+++.+++++++++++..|++++.+|++.+.++|++++.+.++.||+|.++|++++++.+++|.|++++|++++
T Consensus       243 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~  318 (404)
T 1e5e_A          243 SVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS  318 (404)
T ss_dssp             CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred             CCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC
Confidence            7788999999999999999999999999999999999999999999999999999999999999999999999864

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=100.00  E-value=7.3e-43  Score=360.56  Aligned_cols=300  Identities=33%  Similarity=0.573  Sum_probs=269.6

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|.|...  + .++++.+|||+++||.|++.+       ....+|.|+|++++..+++++.||+++|.++.+++
T Consensus         7 ~~~t~~~~~~~~~--~-~~~~~~~pi~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~lr~~la~~~g~~~~i~~   76 (393)
T 1n8p_A            7 KFATKAIHAGEHV--D-VHGSVIEPISLSTTFKQSSPA-------NPIGTYEYSRSQNPNRENLERAVAALENAQYGLAF   76 (393)
T ss_dssp             CHHHHHHHTTCCC--C-SSCCSSCCBCCCSBCCBSSSS-------SBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CccceEEecCCCc--c-CCCCcCCCcccccceeecccc-------ccccCcceecCCChhHHHHHHHHHHHhCCCcEEEE
Confidence            4789999999764  2 478999999999999997642       12257999999999999999999999999899999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +||++|+.+++. ++++||+|+++.+.|++++..+...++..|+++.+++..| ++|+++++++ +++|++++|+||+|.
T Consensus        77 ~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d-~~l~~~i~~~-t~lv~~~~~~nptG~  153 (393)
T 1n8p_A           77 SSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLL-NDLPQLIKEN-TKLVWIETPTNPTLK  153 (393)
T ss_dssp             SCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHH-HHHHHHSCSS-EEEEEECSSCTTTCC
T ss_pred             CChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCCh-HHHHHhcccC-ceEEEEECCCCCcce
Confidence            999999999999 9999999999999999887766556778899999998878 9999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhc----CCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHH
Q 012296          312 CVDVKLVSDLCHKK----GAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHV  386 (466)
Q Consensus       312 v~dl~~Ia~la~~~----gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~  386 (466)
                      +.|+++|.++|+++    |+++|+|++|+.+...++..+|+|+++.|+||+++++|++++|+++++ +++++.++..+..
T Consensus       154 ~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~  233 (393)
T 1n8p_A          154 VTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA  233 (393)
T ss_dssp             CCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH
T ss_pred             ecCHHHHHHHHHHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHh
Confidence            99999999999999    999999999987655567777999999999999999998778999985 7899988887777


Q ss_pred             hCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCCCCCCCchHHHHHhhcCC-c-ceEEEEEec
Q 012296          387 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK-VKRVHYPGLKSHPEHHIATQQMTG-F-GGVVSFEVL  463 (466)
Q Consensus       387 ~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~-V~~V~yPgl~s~p~~~~~~~~~~g-~-Gg~vsfel~  463 (466)
                      +|..+++..+++++++++++..|++++.+|++.+.++|+++|. +.++.||++.++|+++++.++++| . |+|++|+++
T Consensus       234 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~  313 (393)
T 1n8p_A          234 IGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIK  313 (393)
T ss_dssp             HCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEES
T ss_pred             cCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeC
Confidence            8888889999988899999999999999999999999999998 999999999999999999999987 8 999999997


Q ss_pred             c
Q 012296          464 M  464 (466)
Q Consensus       464 ~  464 (466)
                      +
T Consensus       314 ~  314 (393)
T 1n8p_A          314 G  314 (393)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=100.00  E-value=6.8e-42  Score=354.43  Aligned_cols=304  Identities=32%  Similarity=0.513  Sum_probs=270.4

Q ss_pred             cccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 012296          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (466)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~s  232 (466)
                      ++|+++|+|....   .++++++|||++++|.|++.+++.+.+. ...+|.|+++.++..+++++++++++|.+++++++
T Consensus         3 ~~t~~~~~~~~~~---~~~~~~~pi~~s~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~   78 (412)
T 2cb1_A            3 YTTLAVLAGLPED---PHGAVGLPIYAVAAYGFKTLEEGQERFA-TGEGYVYARQKDPTAKALEERLKALEGALEAVVLA   78 (412)
T ss_dssp             HHHHHHHTTCCCC---TTCCSSCCCCCCSBCCCSSHHHHHHHHH-HCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             ccceeeecCCCcC---CCCCcCCCccccceeecCChHHHHHHhc-cccCcCcCCCCChHHHHHHHHHHHHhCCCcEEEEC
Confidence            6799999997642   4789999999999999999988777665 44679999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccc
Q 012296          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  312 (466)
Q Consensus       233 SGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v  312 (466)
                      +|++|+.+++.+++++||+|+++.+.|++++..+...++..|+++.+++. |+++|+++++++ +++|++++|+||+|.+
T Consensus        79 ~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~l~~~i~~~-~~~v~~~~~~n~~G~~  156 (412)
T 2cb1_A           79 SGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEAVREALSAK-TRAVFVETVANPALLV  156 (412)
T ss_dssp             SHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECS-SHHHHHHHCCTT-EEEEEEESSCTTTCCC
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC-CHHHHHHHhccC-CeEEEEeCCCCCCccc
Confidence            99999999999999999999999999998777665556778999998886 499999999875 9999999999999999


Q ss_pred             ccHHHHHHHHHhcCCEEEEeCCCCCC-CcccccccCCcEEEECCccccCccccceeEEEEeCH-----------------
Q 012296          313 VDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-----------------  374 (466)
Q Consensus       313 ~dl~~Ia~la~~~gillIvDea~a~~-~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~-----------------  374 (466)
                      .|+++|.++|+++|+++|+|++++.+ ....+...++|+++.|+||+++++++.+||+++.++                 
T Consensus       157 ~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g  236 (412)
T 2cb1_A          157 PDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKG  236 (412)
T ss_dssp             CCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC----
T ss_pred             ccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccc
Confidence            99999999999999999999999877 656677788999999999999999876788888773                 


Q ss_pred             ----------HHHHHHHHHH-HHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCch
Q 012296          375 ----------KLVTQIRNLH-HVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPE  443 (466)
Q Consensus       375 ----------eli~~l~~~~-~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~  443 (466)
                                ++.+.++... +..|..+++..+++++.+++.+..+++++.++++.+.++|+++|+|..|++|++.+||+
T Consensus       237 ~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~  316 (412)
T 2cb1_A          237 QIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPA  316 (412)
T ss_dssp             ---HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTT
T ss_pred             cchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcc
Confidence                      4555665544 44566778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCcceEEEEEe
Q 012296          444 HHIATQQMTGFGGVVSFEV  462 (466)
Q Consensus       444 ~~~~~~~~~g~Gg~vsfel  462 (466)
                      |+++++|++|.|++++|++
T Consensus       317 ~~~~~~~~~~~~~iv~~~~  335 (412)
T 2cb1_A          317 HRNARKYLASGGPILTLDL  335 (412)
T ss_dssp             HHHHHHHCSSSCSEEEEEC
T ss_pred             HHHHHHhCCCCceEEEEEe
Confidence            9999999999999999998

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=100.00  E-value=2.8e-40  Score=339.95  Aligned_cols=310  Identities=37%  Similarity=0.643  Sum_probs=273.8

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      ++.|+++|+|...  +..+.++..|++.++++.++...+....+.+....|.|+++.++..+++++++++++|.++.+++
T Consensus         8 ~~~t~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~i~~   85 (398)
T 2rfv_A            8 GFNTQIVHAGQQP--DPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLAT   85 (398)
T ss_dssp             CHHHHHHHTTCCC--CTTTCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCceeEeecCCcC--ccCCCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence            4689999999764  23467899999999999999887665555555678999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      ++|++|+.+++.+++++||+|+++++.|+++...+...+...|+++.+++..|+++++++++++ +++|++++|+||+|.
T Consensus        86 ~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~  164 (398)
T 2rfv_A           86 ASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPE-TKVVYIETPANPTLS  164 (398)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTT-EEEEEEESSBTTTTB
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCCC-CeEEEEECCCCCCCc
Confidence            9999999999999999999999999999998776655556779999999988999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHH-HHHHHHHHh-CC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVL-GG  389 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~-~l~~~~~~~-G~  389 (466)
                      +.|+++|.++|+++|+++|+|++|+.+....+..+++|+++.|+||+++++++.++|++++++++++ .++.....+ |.
T Consensus       165 ~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~  244 (398)
T 2rfv_A          165 LVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGG  244 (398)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCC
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999998776666777889999999999999988666799999999887 677666666 77


Q ss_pred             CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       390 ~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ..++..+++++..++.+..|++++.+|++.+.++|++++.+..+.||+|+++|++++...++++.|+|++|++++
T Consensus       245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~  319 (398)
T 2rfv_A          245 CMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG  319 (398)
T ss_dssp             CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred             CCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence            888888998889999999999999999999999999999999999999999999999999888999999999864

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=6.6e-40  Score=335.48  Aligned_cols=302  Identities=32%  Similarity=0.545  Sum_probs=268.7

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|.|...  +..++++.+|||++++|.|++..        ...+|.|+|++++...++++.|+++++.++.+++
T Consensus         4 ~~~t~~~~~~~~~--~~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~   73 (386)
T 1cs1_A            4 KQATIAVRSGLND--DEQYGCVVPPIHLSSTYNFTGFN--------EPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLT   73 (386)
T ss_dssp             CHHHHHHHTTTTC--CTTTCBSSCCBCCCSBBCCSBTT--------BCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CcceeEEecCCCc--cccCCCCCCCccccceeeccccC--------CCCCcceeCCCCccHHHHHHHHHHHhCCCcEEEe
Confidence            4679999999764  23478999999999999997532        2357999999999999999999999999889999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      ++|++|+.+++.+++++||+|+++.+.|++++..+...++..|+++.+++..|+++|+++++++ +++|++++|+||+|.
T Consensus        74 ~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~  152 (386)
T 1cs1_A           74 NTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEK-PKLVLVESPSNPLLR  152 (386)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTC-CSEEEEECSCTTTCC
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhccC-CcEEEEeCCCCCCCc
Confidence            9999999999999999999999999999987766655557789999999988999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCH-HHHHHHHHHHHHhCCC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGA  390 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~-eli~~l~~~~~~~G~~  390 (466)
                      +.|+++|.++|+++|+++|+|++++.+....+...++|+++.|++|++++++.+++|++++++ +++++++.....++..
T Consensus       153 ~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~  232 (386)
T 1cs1_A          153 VVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVT  232 (386)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCB
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999877655566788999999999999998866679999886 8888888877777777


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      .++..+++++++++++..++++..++++.+.++|++++.+..+.+|++.++|.+++...+++|.|++++|++++
T Consensus       233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (386)
T 1cs1_A          233 GGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG  306 (386)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS
T ss_pred             CCHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC
Confidence            78888888888899888899999999999999999999999999999999999999999889999999999874

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=100.00  E-value=6.4e-38  Score=331.29  Aligned_cols=300  Identities=34%  Similarity=0.601  Sum_probs=264.8

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|..+|.+...   +..+++.+||+.++++.+++..        ....|.|+++++|..+++++++++++|.++++++
T Consensus        86 ~~~~~~i~l~~g~---~~~~~~~~~i~~a~~~~~~~~~--------~~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i~~  154 (464)
T 1ibj_A           86 SVSTLLVNLDNKF---DPFDAMSTPLYQTATFKQPSAI--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFCF  154 (464)
T ss_dssp             CHHHHHTCCCCSS---CTTCCSSCCCCCCSBCCCSSSS--------CCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CcCCeEEECCCCC---CCCCCCCccHHhhhhhhhhccc--------ccCCccccCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            3678888987641   1256899999999998865431        2346889999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      ++|++|+.+++. ++++||+|+++++.|+++...+....+..|+++.+++..|+++|+++++++ +++|++++|+||+|.
T Consensus       155 ~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~-tk~v~l~~p~NptG~  232 (464)
T 1ibj_A          155 TSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ-TKLVWLESPTNPRQQ  232 (464)
T ss_dssp             SSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSS-EEEEEECSSCTTTCC
T ss_pred             CCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccC-ceEEEEeCCCCCCCE
Confidence            999999988775 789999999999999998766655677789999999988999999999875 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCH-HHHHHHHHHHHHhCCC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGA  390 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~-eli~~l~~~~~~~G~~  390 (466)
                      +.|+++|+++|+++|+++|+|++|+.+....++.+|+|++++|+||++++++++++|++++++ +++++++..+...|..
T Consensus       233 v~~l~~i~~la~~~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~  312 (464)
T 1ibj_A          233 ISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSG  312 (464)
T ss_dssp             CCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCB
T ss_pred             eecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999877666677789999999999999998767789999984 8888888877777888


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++++.+++++++++++..|+++..++++.++++|++++.+..+.|++|.++|+++++..+.+|+|++++|++++
T Consensus       313 ~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~  386 (464)
T 1ibj_A          313 LAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS  386 (464)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC
T ss_pred             CCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECC
Confidence            88999999999999999999999999999999999999999999999999999999999989999999999853

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=100.00  E-value=6e-34  Score=298.04  Aligned_cols=248  Identities=19%  Similarity=0.267  Sum_probs=216.8

Q ss_pred             cCCccccCCCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHHccCCCEEEEcC-CCCcchHHHH-------H
Q 012296          199 RASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFI-------E  267 (466)
Q Consensus       199 ~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~---~sSGs~Ai~~al~all~~Gd~Vlv~~-~~y~~t~~~~-------~  267 (466)
                      ..+|.|+|.   ..++||+.+|+++|++.+++   ++||++|+.+++.+++++||+|++++ +.|+++...+       .
T Consensus        65 ~~gy~y~~~---~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~  141 (427)
T 3i16_A           65 SSGYGYGDI---GRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNM  141 (427)
T ss_dssp             CCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSS
T ss_pred             CCCCCCCHH---HHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchH
Confidence            345777764   58999999999999998888   89999999999999999999999999 9999887665       1


Q ss_pred             hhcccCCceEEEeCC-----CCHHHHHHhhc--CCCceEEEEeC----CCCCCcccccHHHHHHHHHh--cCCEEEEeCC
Q 012296          268 TVLPKMGITATVIDP-----ADMEGLEAALN--NNNVSLFFTES----PTNPFLRCVDVKLVSDLCHK--KGAIVCIDGT  334 (466)
Q Consensus       268 ~~l~~~Gi~v~~vd~-----~Dle~Le~ai~--~~~tklV~les----P~NPtG~v~dl~~Ia~la~~--~gillIvDea  334 (466)
                      ..+...|+++++++.     .|+++|+++++  + ++++|++++    |+||+|.+.|+++|+++|++  +|+++++|++
T Consensus       142 ~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~-~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a  220 (427)
T 3i16_A          142 GSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDE-SITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNC  220 (427)
T ss_dssp             CCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCT-TEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred             HHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCC-CCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            446677999999886     58999999998  5 499999999    99999999999999999999  9999999999


Q ss_pred             CCCCC-cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH--HHhCCCchH-HH-HHHHHHhhHHHHHH
Q 012296          335 FATPL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNP-NA-AYLIIRGMKTLHLR  409 (466)
Q Consensus       335 ~a~~~-~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~--~~~G~~lsp-~~-a~l~l~~L~tl~~R  409 (466)
                      |+.+. ...+..+|+|++++|+||+++|+++.+||+++++++++++++...  ..+|..+++ +. +++++++++++..|
T Consensus       221 ~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~~~r  300 (427)
T 3i16_A          221 YGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLAPHI  300 (427)
T ss_dssp             TTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHH
T ss_pred             CccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHHHHHHHHHHHHHHHHH
Confidence            99877 577888899999999999999998888999999999999988743  344444444 44 88999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          410 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       410 ~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++++.+|+..++++|++++.  +| ||+ ++||.|++          |++|++++
T Consensus       301 ~~~~~~~a~~la~~L~~~g~--~V-~p~-~~~~~~~~----------i~~i~l~~  341 (427)
T 3i16_A          301 SMEALKGAILCSRIMELAGF--EV-MPK-YDEKRSDI----------IQSIKFND  341 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC--EE-ESC-TTSCCSSS----------CEEEECSS
T ss_pred             HHHHHHHHHHHHHHHHhCCC--ee-cCC-CCCCCccE----------EEEEEECC
Confidence            99999999999999999987  67 898 88887765          89998875

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=5.4e-33  Score=290.82  Aligned_cols=248  Identities=17%  Similarity=0.241  Sum_probs=214.7

Q ss_pred             cCCccccCCCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHHccCCCEEEEcC-CCCcchHHHHH-------
Q 012296          199 RASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE-------  267 (466)
Q Consensus       199 ~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~---~sSGs~Ai~~al~all~~Gd~Vlv~~-~~y~~t~~~~~-------  267 (466)
                      ..+|.|+|+   ..++||+.+|+++|++.+++   ++||++|+.+++.+++++||+|++.+ +.|+++..++.       
T Consensus        66 ~~gy~Y~~~---g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~  142 (427)
T 3hvy_A           66 SSGYGYNDI---GRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKV  142 (427)
T ss_dssp             CCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCS
T ss_pred             CcCCCCCch---hHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhh
Confidence            346777765   58999999999999998888   79999999999999999999999999 99998775551       


Q ss_pred             hhcccCCceEEEeCC----CCHHHHHHhhc--CCCceEEEEeC----CCCCCcccccHHHHHHHHHh--cCCEEEEeCCC
Q 012296          268 TVLPKMGITATVIDP----ADMEGLEAALN--NNNVSLFFTES----PTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTF  335 (466)
Q Consensus       268 ~~l~~~Gi~v~~vd~----~Dle~Le~ai~--~~~tklV~les----P~NPtG~v~dl~~Ia~la~~--~gillIvDea~  335 (466)
                      ..++..|+++..++.    .|+++|+++++  + ++|+|++++    |+||+|.+.|+++|+++|++  +|+++++|++|
T Consensus       143 ~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~-~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~  221 (427)
T 3hvy_A          143 GSLREYGVKYKMVDLKDGKVDINTVKEELKKDD-SIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCY  221 (427)
T ss_dssp             CCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCT-TEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred             hHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCC-CCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCc
Confidence            446667999999987    79999999998  5 499999999    99999999999999999999  89999999999


Q ss_pred             CCCC-cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH--HhCCCch--HHHHHHHHHhhHHHHHHH
Q 012296          336 ATPL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALN--PNAAYLIIRGMKTLHLRV  410 (466)
Q Consensus       336 a~~~-~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--~~G~~ls--p~~a~l~l~~L~tl~~R~  410 (466)
                      +.+. ...+...|+|+++.|+||+++|+++.+||+++++++++++++....  .+|...+  ...+++++++++++..|+
T Consensus       222 ~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~~~r~  301 (427)
T 3hvy_A          222 GEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVT  301 (427)
T ss_dssp             CTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHH
T ss_pred             cccccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHHHHHH
Confidence            9877 5778888999999999999999988889999999999999887543  3332222  234788899999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          411 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       411 ~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      +++.+|+..++++|++++.  +| ||+ +++|.|++          |++|++++
T Consensus       302 ~~~~~~a~~la~~L~~~g~--~V-~p~-~~~~~~~l----------i~~~~l~~  341 (427)
T 3hvy_A          302 IEAVKGAVFCARIMELAGF--DV-LPK-YNDKRTDI----------IQAIKFND  341 (427)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--EE-ESC-TTSCCSSS----------EEEEECSS
T ss_pred             HHHHHHHHHHHHHHHhCCC--ee-cCC-CCCCCceE----------EEEEeCCC
Confidence            9999999999999999986  67 888 88877655          88888865

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=100.00  E-value=1.5e-32  Score=273.85  Aligned_cols=249  Identities=36%  Similarity=0.591  Sum_probs=222.6

Q ss_pred             HHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhc
Q 012296          214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALN  293 (466)
Q Consensus       214 ~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~  293 (466)
                      +|++.+++++|.++.+++++|++|+.+++.+++++||+|+++++.|+++...+...++..|+++.+++..|+++++++++
T Consensus         2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~   81 (331)
T 1pff_A            2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK   81 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred             hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhc
Confidence            68999999999999999999999999999999999999999999999977665444456799999999889999999998


Q ss_pred             CCCceEEEEeCCCCCCcccccHHHHHHHHHh-cCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEe
Q 012296          294 NNNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG  372 (466)
Q Consensus       294 ~~~tklV~lesP~NPtG~v~dl~~Ia~la~~-~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg  372 (466)
                      ++ +++|++++|+||+|.+.|+++|.++|++ +|+++|+|++|+.+....+...++|+++.|+||+++++++.++|++++
T Consensus        82 ~~-~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~~~r~~G~~~~  160 (331)
T 1pff_A           82 PN-TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCS  160 (331)
T ss_dssp             TT-EEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEE
T ss_pred             CC-CeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChhhcCCcEEEEECccccCCCCCceEEEEEe
Confidence            74 9999999999999999999999999999 999999999998765444556789999999999999988655899999


Q ss_pred             CH-HHHHHHHHHHHH-hCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhh
Q 012296          373 SG-KLVTQIRNLHHV-LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQ  450 (466)
Q Consensus       373 ~~-eli~~l~~~~~~-~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~  450 (466)
                      ++ +++++++..... .|...++..++.+..+++++..|+++..++++.+.++|++++.+..+++++|.+.|.+.+...+
T Consensus       161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~  240 (331)
T 1pff_A          161 RADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQ  240 (331)
T ss_dssp             CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhh
Confidence            98 898888876665 5667788888888888999998999999999999999999999999999999999999999988


Q ss_pred             cCCcceEEEEEec
Q 012296          451 MTGFGGVVSFEVL  463 (466)
Q Consensus       451 ~~g~Gg~vsfel~  463 (466)
                      .++.|++++|+++
T Consensus       241 ~~~~~~~~~~~~~  253 (331)
T 1pff_A          241 MKMFGSMIAFDVD  253 (331)
T ss_dssp             CSSCCSEEEEECS
T ss_pred             CCCCceEEEEEEC
Confidence            8899999999986

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=100.00  E-value=1.1e-32  Score=287.03  Aligned_cols=246  Identities=16%  Similarity=0.201  Sum_probs=211.4

Q ss_pred             cCCccccCCCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHHccCCCEEEEcC-CCCcchHHHHH------h
Q 012296          199 RASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE------T  268 (466)
Q Consensus       199 ~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~---~sSGs~Ai~~al~all~~Gd~Vlv~~-~~y~~t~~~~~------~  268 (466)
                      ..+|.|+|   +..++||+.+|+++|.+.+++   ++||++|+.+++.+++++||+|++++ +.|.++...+.      .
T Consensus        51 ~~~~~y~~---~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~  127 (409)
T 3jzl_A           51 STGYGYDD---EGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQG  127 (409)
T ss_dssp             CCTTCTTC---HHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSS
T ss_pred             CcCCCCCh---hHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhh
Confidence            34566665   468999999999999998888   78999999999999999999999998 99998775552      3


Q ss_pred             hcccCCceEEEeCC-----CCHHHHHHhhcCCCceEEEEeC----CCCCCcccccHHHHHHHHHh--cCCEEEEeCCCCC
Q 012296          269 VLPKMGITATVIDP-----ADMEGLEAALNNNNVSLFFTES----PTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFAT  337 (466)
Q Consensus       269 ~l~~~Gi~v~~vd~-----~Dle~Le~ai~~~~tklV~les----P~NPtG~v~dl~~Ia~la~~--~gillIvDea~a~  337 (466)
                      .++..|+++++++.     .|+++|+++++++ +++|++++    |+||+|.+.|+++|+++|++  +|+++++|++|+.
T Consensus       128 ~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~-tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~  206 (409)
T 3jzl_A          128 SLKDFHIGYSSVPLLENGDVDFPRIAKKMTPK-TKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGE  206 (409)
T ss_dssp             CTGGGTCEEEECCCCTTSCCCHHHHHHHCCTT-EEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCT
T ss_pred             HHHHcCCEEEEeCCCCCCCcCHHHHHHhccCC-CeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCccc
Confidence            56678999999987     6899999999875 99999999    99999999999999999999  9999999999998


Q ss_pred             CC-cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHH------hCCCchHHHHHHHHHhhHHHHHHH
Q 012296          338 PL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV------LGGALNPNAAYLIIRGMKTLHLRV  410 (466)
Q Consensus       338 ~~-~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~------~G~~lsp~~a~l~l~~L~tl~~R~  410 (466)
                      +. ...+...|+|++++|+||+++|+++.+||+++++++++++++..+..      .|..+.  .+++++++++++..|+
T Consensus       207 ~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~--~~~~~l~gl~~~~~r~  284 (409)
T 3jzl_A          207 FVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLY--SLLEMYQGFFLAPHVT  284 (409)
T ss_dssp             TTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTT--CHHHHHHHHHHHHHHH
T ss_pred             ccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHH--HHHHHHHHHhhHHHHH
Confidence            76 46788889999999999999999888899999999999998875432      222222  2466789999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          411 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       411 ~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      +++.+|++.++++|++++.  +| ||+ ++||.|++          |++|++++
T Consensus       285 ~~~~~~a~~la~~L~~~g~--~v-~p~-~~~~~~~~----------i~~i~l~~  324 (409)
T 3jzl_A          285 AQAIKGARFTAAMLAEFGV--EA-DPV-WDAPRTDL----------IQSVSFHN  324 (409)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--EE-ESC-TTSCCSSS----------CCEEECSC
T ss_pred             HHHHHHHHHHHHHHHhCCC--cc-cCC-CCCCCccE----------EEEEEeCC
Confidence            9999999999999999986  67 888 78877654          88888764

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.95  E-value=3.7e-27  Score=246.80  Aligned_cols=242  Identities=18%  Similarity=0.191  Sum_probs=196.7

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHHccCCCEEEEcC-CCCcchHHHHH------hhcccCCceE
Q 012296          208 GNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE------TVLPKMGITA  277 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~---~sSGs~Ai~~al~all~~Gd~Vlv~~-~~y~~t~~~~~------~~l~~~Gi~v  277 (466)
                      +++..+++++.+++++|.+..++   ++||++|+..++.+++++||+|++++ +.|..+...+.      ..++..|+++
T Consensus        63 ~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~  142 (431)
T 3ht4_A           63 DDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGY  142 (431)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEE
T ss_pred             ChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEE
Confidence            35678999999999999987776   88999999999999999999999998 99998765542      3456679999


Q ss_pred             EEeCC-----CCHHHHHHhhcCCCceEEEEeC-CCCCC---cccccHHHHHHHHHh--cCCEEEEeCCCCCCC-cccccc
Q 012296          278 TVIDP-----ADMEGLEAALNNNNVSLFFTES-PTNPF---LRCVDVKLVSDLCHK--KGAIVCIDGTFATPL-NQKALS  345 (466)
Q Consensus       278 ~~vd~-----~Dle~Le~ai~~~~tklV~les-P~NPt---G~v~dl~~Ia~la~~--~gillIvDea~a~~~-~~~~l~  345 (466)
                      ++++.     .|+++|+++++++ +++|++++ |+||+   |.+.|+++|+++|++  +|+++|+|++|+.+. ...+..
T Consensus       143 ~~v~~~~~~~~d~e~l~~~l~~~-tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~~  221 (431)
T 3ht4_A          143 NAVPLTEGGLVDFEAVAAAIHSN-TKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCH  221 (431)
T ss_dssp             EECCBCTTSSBCHHHHHHHCCTT-EEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGGG
T ss_pred             EEeCCCCCCCcCHHHHHhhcCCC-CeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCccc
Confidence            99886     4899999999875 99999995 55555   555678999999999  999999999998876 366778


Q ss_pred             cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHh--CCCch--HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 012296          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL--GGALN--PNAAYLIIRGMKTLHLRVQQQNSTALRMA  421 (466)
Q Consensus       346 ~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~--G~~ls--p~~a~l~l~~L~tl~~R~~~~~~na~~La  421 (466)
                      .|+|+++.|++|+++|+....||+++++++++++++......  |....  ...+++++++++++..|++++.++++.++
T Consensus       222 ~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~l~  301 (431)
T 3ht4_A          222 VGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALKGAIFTA  301 (431)
T ss_dssp             TTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Confidence            899999999999999876667899999999999988755432  22222  22356678899999999999999999999


Q ss_pred             HHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          422 KILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       422 ~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++|++++.  .| +|. ++++          +.+.|++|++++
T Consensus       302 ~~L~~~g~--~v-~p~-~~~~----------~~~li~~i~l~~  330 (431)
T 3ht4_A          302 AFLEKLGM--NT-SPA-WNAP----------RTDLIQSVQFDD  330 (431)
T ss_dssp             HHHHHHTC--CE-ESC-TTSC----------CSSSCCEEECCC
T ss_pred             HHHHhCcC--Ee-cCC-CCCC----------CccEEEEEEeCC
Confidence            99999875  45 676 4543          345588887764

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.93  E-value=2.7e-24  Score=217.56  Aligned_cols=224  Identities=13%  Similarity=0.185  Sum_probs=173.4

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEE
Q 012296          202 FEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~  278 (466)
                      +.|+  ..+...+|++.++++++.   ++++++++|++|+.+++.+++++||+|+++.+.|.++...    +...|.++.
T Consensus        57 ~~y~--~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~  130 (375)
T 3op7_A           57 LNYG--WIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDI----PKSLGAEVD  130 (375)
T ss_dssp             CSSC--CTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHH----HHHTTCEEE
T ss_pred             cCCC--CCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHH----HHHcCCEEE
Confidence            4444  345567899999998742   6777777888999999999999999999999999986644    345677776


Q ss_pred             EeCC-------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----cc
Q 012296          279 VIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----AL  344 (466)
Q Consensus       279 ~vd~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----~l  344 (466)
                      .++.       .|+++|+++++++ +++|++++|+||+|.+.+   +++|.++|++||+++|+|++|+......    ..
T Consensus       131 ~v~~~~~~~~~~d~~~l~~~l~~~-~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~  209 (375)
T 3op7_A          131 LWQIEEENGWLPDLEKLRQLIRPT-TKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIE  209 (375)
T ss_dssp             EEEEEGGGTTEECHHHHHHHCCTT-CCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHH
T ss_pred             EEeccccCCCCCCHHHHHHhhccC-CeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhh
Confidence            6653       2899999999874 999999999999999999   9999999999999999999987633211    11


Q ss_pred             ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHH----HHHHHHHHHHHHHH
Q 012296          345 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL----HLRVQQQNSTALRM  420 (466)
Q Consensus       345 ~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl----~~R~~~~~~na~~L  420 (466)
                      ..+.++++.|++|.++.+| .++|++++++++++.++..+...+...++..++++...++..    ..+.++..++++.+
T Consensus       210 ~~~~~i~~~s~sK~~~~~G-~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l  288 (375)
T 3op7_A          210 VYDKGIAVNSLSKTYSLPG-IRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAIL  288 (375)
T ss_dssp             HCTTEEEEEESSSSSSCGG-GCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeEChhhcCCcc-cceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            2356799999999998676 457999999999999887776655555666655555544433    33344457888999


Q ss_pred             HHHHHcCCCeEEE
Q 012296          421 AKILEAHPKVKRV  433 (466)
Q Consensus       421 a~~L~~~p~V~~V  433 (466)
                      .+.|+++|++..+
T Consensus       289 ~~~l~~~~~~~~~  301 (375)
T 3op7_A          289 DQWIEEEPLVSYI  301 (375)
T ss_dssp             HHHHHHCTTEEEC
T ss_pred             HHHHhhCCCceEe
Confidence            9999998887644

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.92  E-value=4.7e-24  Score=217.83  Aligned_cols=227  Identities=15%  Similarity=0.163  Sum_probs=174.2

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHH----ccCCCEEEEcCCCCcchHHHHHhhcccCC
Q 012296          202 FEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMG  274 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~al----l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~G  274 (466)
                      +.|+....+...++++.++++++.   ++++++++|++|+.+++.++    +++||+|+++.+.|+++...+.......|
T Consensus        64 ~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g  143 (420)
T 1t3i_A           64 HQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTG  143 (420)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcC
Confidence            345433346688999999999998   67888888889999999999    89999999999999996544444455568


Q ss_pred             ceEEEeCC-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-cccccCC
Q 012296          275 ITATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-KALSLGA  348 (466)
Q Consensus       275 i~v~~vd~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~-~~l~~ga  348 (466)
                      +++..++.     .|+++|+++++++ +++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+... ....+++
T Consensus       144 ~~~~~v~~~~~~~~d~~~l~~~l~~~-~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~  222 (420)
T 1t3i_A          144 AVLKFVQLDEQESFDLEHFKTLLSEK-TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDC  222 (420)
T ss_dssp             CEEEEECBCTTSSBCHHHHHHHCCTT-EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTC
T ss_pred             cEEEEeccCCCCCcCHHHHHHhhCCC-ceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCC
Confidence            88888764     4799999999874 999999999999999999999999999999999999998765432 3345579


Q ss_pred             cEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHH--------------------hCCCchHHHHHHH----HHhhH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--------------------LGGALNPNAAYLI----IRGMK  404 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~--------------------~G~~lsp~~a~l~----l~~L~  404 (466)
                      |+++.|+||.++++|   +|+++++++++++++.....                    +....++..++++    +..++
T Consensus       223 di~~~s~sK~~~~~g---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~  299 (420)
T 1t3i_A          223 DWLVASGHKMCAPTG---IGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT  299 (420)
T ss_dssp             SEEEEEGGGTTSCTT---CEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH
T ss_pred             CEEEEehhhhcCCCc---eEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH
Confidence            999999999887765   69999999988877543321                    1111222333332    22232


Q ss_pred             H--HHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 012296          405 T--LHLRVQQQNSTALRMAKILEAHPKVKR  432 (466)
Q Consensus       405 t--l~~R~~~~~~na~~La~~L~~~p~V~~  432 (466)
                      .  ++...++..++++.+.+.|+++|++..
T Consensus       300 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  329 (420)
T 1t3i_A          300 DLGMENIHNYEVELTHYLWQGLGQIPQLRL  329 (420)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence            2  355667778899999999999888753

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.92  E-value=2.8e-23  Score=210.74  Aligned_cols=211  Identities=11%  Similarity=0.101  Sum_probs=171.0

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHH
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~L  288 (466)
                      .+...++++.|++++|.++.+++++|++|+..++.+++++||+|+++.+.|+.+...    +...|.++..++..|+++|
T Consensus        83 ~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~----~~~~g~~~~~~~~~d~~~l  158 (384)
T 1bs0_A           83 SVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEA----ASLSPSQLRRFAHNDVTHL  158 (384)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHTSSSEEEEECTTCHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCcEEEEcccccHHHHHH----HHHcCCCEEEeCCCCHHHH
Confidence            478899999999999998899999999999999999999999999999999976543    3446889888988899999


Q ss_pred             HHhhcCC--CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-------cccccCCcEEEECCcccc
Q 012296          289 EAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------KALSLGADLVLHSATKFI  359 (466)
Q Consensus       289 e~ai~~~--~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~-------~~l~~gaDivv~S~sK~l  359 (466)
                      ++++++.  ++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+...       .....+.|+++.|+||++
T Consensus       159 ~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~  238 (384)
T 1bs0_A          159 ARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGF  238 (384)
T ss_dssp             HHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTT
T ss_pred             HHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchh
Confidence            9998753  2789999999999999999999999999999999999998765321       112245899999999999


Q ss_pred             CccccceeEEEEeCHHHHHHHHHHHHHh--CCCchHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHcC
Q 012296          360 GGHNDVLAGSISGSGKLVTQIRNLHHVL--GGALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       360 gg~gdv~gG~ivg~~eli~~l~~~~~~~--G~~lsp~~a~l~l~~L~-----tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      +++    ||++++++++++.++.....+  +...++..+..+...++     .++.+.++..++++.+.+.|+++
T Consensus       239 ~~~----GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  309 (384)
T 1bs0_A          239 GVS----GAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL  309 (384)
T ss_dssp             SSC----CEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             hcc----CcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence            854    499999999998887653222  23456665554444444     34456777888999999999987

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.92  E-value=1.4e-23  Score=213.05  Aligned_cols=213  Identities=17%  Similarity=0.159  Sum_probs=172.5

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHH
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~  287 (466)
                      ..+...++++.+++++|.++.+++++|++|+..++.+++++||+|+++.+.|+++..    .++..|.++..++..|+++
T Consensus        86 ~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~  161 (399)
T 3tqx_A           86 TQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASIID----GIRLCKAQRYRYKNNAMGD  161 (399)
T ss_dssp             CBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHH----HHHSCCSEEEEECTTCTTH
T ss_pred             CchHHHHHHHHHHHHHCCCcEEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHHH----HHHHcCCceeEeCCCCHHH
Confidence            457789999999999999999999999999999999999999999999999998654    3455788888888888999


Q ss_pred             HHHhhcCC-----CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-------cccc--cCCcEEEE
Q 012296          288 LEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------KALS--LGADLVLH  353 (466)
Q Consensus       288 Le~ai~~~-----~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~-------~~l~--~gaDivv~  353 (466)
                      |++++++.     ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.++..       ....  .+.|+++.
T Consensus       162 l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~  241 (399)
T 3tqx_A          162 LEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTG  241 (399)
T ss_dssp             HHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEE
T ss_pred             HHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEe
Confidence            99988751     4899999999999999999999999999999999999998644321       1112  26799999


Q ss_pred             CCccccCccccceeEEEEeCHHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHcC
Q 012296          354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       354 S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--~~G~~lsp~~a~l~l~~L~t----l~~R~~~~~~na~~La~~L~~~  427 (466)
                      |+||+++|.   .||++++++++++.+.....  .+.+..++..+..++..++.    +....++..++++.+.+.|+++
T Consensus       242 s~sK~~~g~---~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  318 (399)
T 3tqx_A          242 TLGKALGGA---SGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKL  318 (399)
T ss_dssp             ESSSSSCSS---CCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHhcccC---ceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            999999943   36999999999998877533  23445666655555544444    3556677788899999999876

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.92  E-value=1.5e-23  Score=214.04  Aligned_cols=212  Identities=18%  Similarity=0.187  Sum_probs=173.4

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHH
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~L  288 (466)
                      .+...++++.|++++|.++.+++++|++|+..++.+++++||+|+++.+.|+++..    .+...|+++..++..|+++|
T Consensus        89 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~l  164 (401)
T 1fc4_A           89 QDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIID----GVRLCKAKRYRYANNDMQEL  164 (401)
T ss_dssp             BHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHH----HHHTSCSEEEEECTTCHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHcCCCCEEEEcchhHHHHHH----HHHHcCCceEEECCCCHHHH
Confidence            67889999999999999888999999999999999999999999999999987653    34567889988888899999


Q ss_pred             HHhhcCC-----CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-c--------cccccCCcEEEEC
Q 012296          289 EAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-Q--------KALSLGADLVLHS  354 (466)
Q Consensus       289 e~ai~~~-----~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~--------~~l~~gaDivv~S  354 (466)
                      ++++++.     ++++|++++|+||+|.+.++++|.++|+++|+++|+|++|+.++. .        ..+..+.|+++.|
T Consensus       165 ~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s  244 (401)
T 1fc4_A          165 EARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGT  244 (401)
T ss_dssp             HHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEE
T ss_pred             HHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEec
Confidence            9988641     389999999999999999999999999999999999999963322 1        1112357999999


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--~~G~~lsp~~a~l~l~~L~tl---~~R~~~~~~na~~La~~L~~~  427 (466)
                      +||+++++.   ||++++++++++.++....  .+....++..++.+...++.+   ..+.++..++++.+.+.|+++
T Consensus       245 ~sK~~~~~~---gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  319 (401)
T 1fc4_A          245 LGKALGGAS---GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA  319 (401)
T ss_dssp             SSSTTCSSS---CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chhhccCCC---CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            999995442   5999999999998876542  235566777766666666655   356777888999999999886

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.92  E-value=4.3e-24  Score=213.52  Aligned_cols=216  Identities=19%  Similarity=0.218  Sum_probs=165.1

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC----C
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----A  283 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----~  283 (466)
                      .++...+|++.|++++|.++.+++++|++|+.+++.+++++||+|+++++.|..++... ......|+++.+++.    .
T Consensus        36 ~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~  114 (347)
T 1jg8_A           36 EDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVG-AMAVLSGVMPHPVPGKNGAM  114 (347)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTT-HHHHHTCCEEEEECEETTEE
T ss_pred             CChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhcccc-chhhccCeEEEEecCCCCcc
Confidence            57888999999999999998999999999999999999999999999999997654211 122345777766621    3


Q ss_pred             CHHHHHHhhcCC-----CceEEEEeCCCCCC-ccccc---HHHHHHHHHhcCCEEEEeCCCCC------CCcccccccCC
Q 012296          284 DMEGLEAALNNN-----NVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT------PLNQKALSLGA  348 (466)
Q Consensus       284 Dle~Le~ai~~~-----~tklV~lesP~NPt-G~v~d---l~~Ia~la~~~gillIvDea~a~------~~~~~~l~~ga  348 (466)
                      |+++|++++++.     ++++|++++|+||| |.+.+   +++|.++|+++|+++|+|+++..      +.....+..+.
T Consensus       115 d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~  194 (347)
T 1jg8_A          115 DPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYA  194 (347)
T ss_dssp             CHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTC
T ss_pred             CHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccc
Confidence            899999999751     48999999999999 99876   56889999999999999998531      11122233468


Q ss_pred             cEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~l--sp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~  426 (466)
                      |.++.|+||+++++   +||+++++++++++++.++..+|...  +...++++..+++....++++..++++.+.+.|++
T Consensus       195 d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~  271 (347)
T 1jg8_A          195 DSVMFCLSKGLCAP---VGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKE  271 (347)
T ss_dssp             SEEEEESSSTTCCS---SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEecccccCCC---ceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88889999999875   46678889999988887766666443  34455555556665444566666788888888876


Q ss_pred             C
Q 012296          427 H  427 (466)
Q Consensus       427 ~  427 (466)
                      +
T Consensus       272 ~  272 (347)
T 1jg8_A          272 I  272 (347)
T ss_dssp             H
T ss_pred             c
Confidence            5

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.92  E-value=4.2e-23  Score=207.84  Aligned_cols=220  Identities=12%  Similarity=0.148  Sum_probs=171.5

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      +.+|+++...++++.++++++.  ++++++++|++|+.+++.+++++||+|+++.+.|.+....    +...|.++..++
T Consensus        61 ~~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~  136 (363)
T 3ffh_A           61 TEIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQN----ALIEGAEVREIP  136 (363)
T ss_dssp             CCBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHH----HHHHTCEEEEEE
T ss_pred             hhcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHH----HHHcCCEEEEec
Confidence            4455677788999999999996  5677777888999999999999999999999999885543    344688888876


Q ss_pred             CC-----CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhc--CCEEEEeCCCCCCCc-------ccccccC
Q 012296          282 PA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLN-------QKALSLG  347 (466)
Q Consensus       282 ~~-----Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~--gillIvDea~a~~~~-------~~~l~~g  347 (466)
                      ..     |+++|+++++++ +++|++++|+||||.+.|+++|.++++.+  |+++|+|++|+....       ......+
T Consensus       137 ~~~~~~~d~~~l~~~i~~~-~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  215 (363)
T 3ffh_A          137 LLQDGEHDLEGMLNAIDEK-TTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYK  215 (363)
T ss_dssp             CCTTSCCCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCT
T ss_pred             CCCCCCcCHHHHHHhcccC-CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCC
Confidence            55     899999999875 99999999999999999999999999887  999999999873221       1111234


Q ss_pred             CcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHH
Q 012296          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKIL  424 (466)
Q Consensus       348 aDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~L  424 (466)
                      .++++.|++|.++.+| .+.|+++++++++++++.....+  ..++..++.+...+   +.+..+.++..++++.+.+.|
T Consensus       216 ~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l  292 (363)
T 3ffh_A          216 NLIITRTFSKIYGLAS-ARVGYGIADKEIIRQLNIVRPPF--NTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFA  292 (363)
T ss_dssp             TEEEEEESSSTTCCSS-CCCEEEEECHHHHHHHHHTCCSC--CCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeechhhhcCch-hceeeeecCHHHHHHHHHhCCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5688999999998776 35788889999999888766533  34555555444444   566777788889999999999


Q ss_pred             HcCCCeE
Q 012296          425 EAHPKVK  431 (466)
Q Consensus       425 ~~~p~V~  431 (466)
                      ++++++.
T Consensus       293 ~~~~g~~  299 (363)
T 3ffh_A          293 KRFEKVK  299 (363)
T ss_dssp             HHCTTCE
T ss_pred             hhCCCce
Confidence            9977764

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.92  E-value=7.4e-24  Score=216.30  Aligned_cols=225  Identities=15%  Similarity=0.110  Sum_probs=169.7

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHH---ccCCCEEEEcCCCCcchHHHHHhhcccCCce
Q 012296          202 FEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~al---l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~  276 (466)
                      |.|++...+..+++++.+++++|.+  +.+++++|++++.+++.++   +++||+|+++.+.|+++...+....+..|.+
T Consensus        61 ~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~  140 (406)
T 3cai_A           61 HPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAK  140 (406)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCe
Confidence            4455445678899999999999984  5666667779999988887   7899999999999998765554433446888


Q ss_pred             EEEeCCC------CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCc
Q 012296          277 ATVIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGAD  349 (466)
Q Consensus       277 v~~vd~~------Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaD  349 (466)
                      +.+++..      |+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .....+++|
T Consensus       141 v~~v~~~~~~~~~d~~~l~~~l~~~-~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d  219 (406)
T 3cai_A          141 VKWAEVDIETGELPTWQWESLISKS-TRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDAD  219 (406)
T ss_dssp             EEEECCCTTTCCCCGGGHHHHCCTT-EEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCS
T ss_pred             EEEEecCcccCCcCHHHHHHHhCCC-ceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCC
Confidence            8888754      899999999874 99999999999999999999999999999999999999875433 333346899


Q ss_pred             EEEECCccccCccccceeE-EEEeCHHHHHHHHHHHH---------HhCCCchHHHHH---HHHHhhH------------
Q 012296          350 LVLHSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHH---------VLGGALNPNAAY---LIIRGMK------------  404 (466)
Q Consensus       350 ivv~S~sK~lgg~gdv~gG-~ivg~~eli~~l~~~~~---------~~G~~lsp~~a~---l~l~~L~------------  404 (466)
                      +++.|++|++++ +   +| +++++++++++++....         ...++.++....   .++..+.            
T Consensus       220 ~~~~s~~K~~g~-~---~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~  295 (406)
T 3cai_A          220 VVTVNAHAWGGP-P---IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRE  295 (406)
T ss_dssp             EEEEEGGGGTSC-S---CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHH
T ss_pred             EEEeehhhhcCC-C---cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhh
Confidence            999999998863 3   45 99999988877654321         112233333221   1222222            


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 012296          405 ----TLHLRVQQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       405 ----tl~~R~~~~~~na~~La~~L~~~p~V~  431 (466)
                          .++...++..++++.+.+.|+++|++.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  326 (406)
T 3cai_A          296 RLAVSMQSADAYLNRVFDYLMVSLRSLPLVM  326 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence                245556677788999999999988774

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.92  E-value=1.4e-23  Score=215.37  Aligned_cols=224  Identities=18%  Similarity=0.237  Sum_probs=170.5

Q ss_pred             cCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHcc----CCCEEEEcCCCCcchHHHHHhhcccCCceEE
Q 012296          205 GRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVP----AGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all~----~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~  278 (466)
                      ++...+..+++++.++++++.+  +++++++|++|+.+++.+++.    +||+|+++.+.|+++...+.. +...|+++.
T Consensus        63 ~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~~  141 (423)
T 3lvm_A           63 GWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQ-LEREGFEVT  141 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHH-HHHTTCEEE
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHH-HHHcCCEEE
Confidence            3334566789999999999985  788888889999999988874    799999999999987665533 356688888


Q ss_pred             EeCCC-----CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEE
Q 012296          279 VIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVL  352 (466)
Q Consensus       279 ~vd~~-----Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv  352 (466)
                      +++..     |+++|+++++++ +++|++++|+||+|.+.|+++|.++|+++|++||+|++++.+.. ......++|+++
T Consensus       142 ~v~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~  220 (423)
T 3lvm_A          142 YLAPQRNGIIDLKELEAAMRDD-TILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS  220 (423)
T ss_dssp             EECCCTTSCCCHHHHHHHCCTT-EEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEE
T ss_pred             EeccCCCCccCHHHHHHhcCCC-cEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEE
Confidence            88754     899999999875 99999999999999999999999999999999999999876543 344456899999


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHHHHHHHH-------HhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHHHHHH
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMA  421 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~-------~~G~~lsp~~a~l~l~~L~----tl~~R~~~~~~na~~La  421 (466)
                      .|+||++++++   .|++++++++++.+.....       ...+..+......+...++    .++...++..++++.+.
T Consensus       221 ~s~sK~~g~~g---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~  297 (423)
T 3lvm_A          221 FSGHKIYGPKG---IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLW  297 (423)
T ss_dssp             EESTTTTSCSS---CEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             echHHhcCCCC---eEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999887765   5888888766555433221       1112233333222222222    24556677788899999


Q ss_pred             HHHHcCCCeEEE
Q 012296          422 KILEAHPKVKRV  433 (466)
Q Consensus       422 ~~L~~~p~V~~V  433 (466)
                      +.|+++|++..+
T Consensus       298 ~~L~~~~~~~~~  309 (423)
T 3lvm_A          298 NGIKDIEEVYLN  309 (423)
T ss_dssp             HHHTTSTTEEEE
T ss_pred             HHHhcCCCEEEe
Confidence            999988887544

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.92  E-value=2.9e-24  Score=216.13  Aligned_cols=221  Identities=14%  Similarity=0.228  Sum_probs=167.7

Q ss_pred             cccCCCchhHHHHHHH-HHhhhCCCcEEEeCCH-HHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          203 EYGRYGNPTTVVVEEK-MSALEGAESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       203 ~Y~R~~np~~~~Lee~-LA~l~g~e~~l~~sSG-s~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      .++++..+...++++. +++++|.+ .+++++| ++|+.+++.+++++||+|++++++|++....    +...|+++..+
T Consensus        46 ~~~~~~~~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v  120 (371)
T 2e7j_A           46 RLDEIKTPPIHDFIHNQLPKFLGCD-VARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVA----AERAGLNIALV  120 (371)
T ss_dssp             -------CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHHTTCEEEEE
T ss_pred             cchhhHHHHHHHHHHHHHHHHcCCC-EEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHH----HHHcCCeEEEe
Confidence            3455567889999999 99999988 5555555 6999999999999999999999999987644    44568888888


Q ss_pred             C--CC-----CHHHHHHhhc-----CCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccC
Q 012296          281 D--PA-----DMEGLEAALN-----NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLG  347 (466)
Q Consensus       281 d--~~-----Dle~Le~ai~-----~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~g  347 (466)
                      +  ..     |+++|+++++     + ++++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+.. .....++
T Consensus       121 ~~~~~~~~~~d~~~l~~~l~~~~~~~-~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~  199 (371)
T 2e7j_A          121 PKTDYPDYAITPENFAQTIEETKKRG-EVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIG  199 (371)
T ss_dssp             CCCCTTTCCCCHHHHHHHHHHHTTTS-CEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHT
T ss_pred             ecccCCCCCcCHHHHHHHHHhhcccC-CeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcC
Confidence            7  44     7999999997     5 499999999999999999999999999999999999999887543 3344557


Q ss_pred             CcEEEECCccccCccccceeEEEEeCHHHHHH-HHHHHH--Hh-----CCCchHHHHHHHHHhhHHHH-HHHHHH--HHH
Q 012296          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ-IRNLHH--VL-----GGALNPNAAYLIIRGMKTLH-LRVQQQ--NST  416 (466)
Q Consensus       348 aDivv~S~sK~lgg~gdv~gG~ivg~~eli~~-l~~~~~--~~-----G~~lsp~~a~l~l~~L~tl~-~R~~~~--~~n  416 (466)
                      +|+++.|++|+++++.  .+|+++++++++++ ++....  ..     .+..++...+.+...++.+. ...++.  .++
T Consensus       200 ~di~~~s~sK~~~~~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  277 (371)
T 2e7j_A          200 ADFIVGSGHKSMAASG--PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEK  277 (371)
T ss_dssp             CSEEEEEHHHHSSCCS--SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHH
T ss_pred             CCEEEecCCcCCCCCC--CcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999998875  57999999888776 654332  11     23334444444444455444 344556  788


Q ss_pred             HHHHHHHHHcCCCeEE
Q 012296          417 ALRMAKILEAHPKVKR  432 (466)
Q Consensus       417 a~~La~~L~~~p~V~~  432 (466)
                      ++.+.+.|+++ ++..
T Consensus       278 ~~~l~~~L~~~-~~~~  292 (371)
T 2e7j_A          278 ARRFAAEMEKL-GIKQ  292 (371)
T ss_dssp             HHHHHHHHHHT-TCEE
T ss_pred             HHHHHHHHHHc-CcEE
Confidence            99999999987 6643

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.92  E-value=1.5e-23  Score=212.72  Aligned_cols=221  Identities=16%  Similarity=0.175  Sum_probs=168.6

Q ss_pred             CchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHH----ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          208 GNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~al----l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      ..+...++++.++++++.   ++.+++++|++|+.+++.++    +++||+|+++.+.|++....+.......|.++..+
T Consensus        65 ~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~  144 (406)
T 1kmj_A           65 ATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVI  144 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEE
Confidence            456688999999999998   45666777779999999998    89999999999999987655545555668888877


Q ss_pred             CC-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEEC
Q 012296          281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHS  354 (466)
Q Consensus       281 d~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S  354 (466)
                      +.     .|+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......++|+++.|
T Consensus       145 ~~~~~~~~d~~~l~~~l~~~-~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s  223 (406)
T 1kmj_A          145 PLNPDGTLQLETLPTLFDEK-TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFS  223 (406)
T ss_dssp             CBCTTSCBCGGGHHHHCCTT-EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEE
T ss_pred             ecCCCCCcCHHHHHHHhccC-CeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEE
Confidence            64     3789999999874 99999999999999999999999999999999999999876432 22234579999999


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHHHH---------------------HhCCCchHHHHHHHH-HhhHH-----HH
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLII-RGMKT-----LH  407 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~---------------------~~G~~lsp~~a~l~l-~~L~t-----l~  407 (466)
                      ++|.++++|   .|+++++++++++++....                     .+....++..+++++ ..++.     ++
T Consensus       224 ~~K~~g~~G---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~  300 (406)
T 1kmj_A          224 GHKLYGPTG---IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLN  300 (406)
T ss_dssp             GGGTTSCTT---CEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             chhccCCCC---cEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHH
Confidence            999997665   5999999998887654321                     011111222222222 22332     33


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCeEE
Q 012296          408 LRVQQQNSTALRMAKILEAHPKVKR  432 (466)
Q Consensus       408 ~R~~~~~~na~~La~~L~~~p~V~~  432 (466)
                      ...++..++++.+.+.|+++|++..
T Consensus       301 ~~~~~~~~~~~~l~~~L~~~~~~~~  325 (406)
T 1kmj_A          301 NIAEYEQNLMHYALSQLESVPDLTL  325 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            4556677889999999999887753

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.91  E-value=3.5e-23  Score=208.55  Aligned_cols=218  Identities=12%  Similarity=0.186  Sum_probs=170.3

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      +.+|+++...++++.+++++|.  ++.+++++|++|+.+++.+++++||+|+++.+.|.+....    +...|.++..++
T Consensus        59 ~~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~  134 (365)
T 3get_A           59 AHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIY----AKQCGAKCYKTQ  134 (365)
T ss_dssp             TTSCCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHH----HHHHTCEEEECS
T ss_pred             hccCCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHH----HHHcCCEEEEEe
Confidence            3444555557999999999995  5677778888999999999999999999999999976543    345688888887


Q ss_pred             C-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHH--hcCCEEEEeCCCCCCC---c----ccc----
Q 012296          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH--KKGAIVCIDGTFATPL---N----QKA----  343 (466)
Q Consensus       282 ~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~--~~gillIvDea~a~~~---~----~~~----  343 (466)
                      .     .|+++|+++++++ +++|++++|+||||.+.++++|.++++  ++|+++|+|++|+...   .    ...    
T Consensus       135 ~~~~~~~d~~~l~~~l~~~-~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  213 (365)
T 3get_A          135 SITHNLDEFKKLYETHKDE-IKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELI  213 (365)
T ss_dssp             SSSCCHHHHHHHHHHTTTT-EEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHH
T ss_pred             cCCCCCCCHHHHHHHhCCC-CCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHh
Confidence            5     4689999999864 999999999999999999999888888  6799999999987322   1    111    


Q ss_pred             cccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHh---hHHHHHHHHHHHHHHHHH
Q 012296          344 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG---MKTLHLRVQQQNSTALRM  420 (466)
Q Consensus       344 l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~---L~tl~~R~~~~~~na~~L  420 (466)
                      ...+.++++.|+||+++.+| .+.|+++++++++++++.....++  .++...+.+...   .+.+..+.++..++++.+
T Consensus       214 ~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l  290 (365)
T 3get_A          214 KEFDNVLYLGTFSKLYGLGG-LRIGYGIANANIISAFYKLRAPFN--VSNLALKAAVAAMDDDEFTEKTLENNFSQMELY  290 (365)
T ss_dssp             HHCTTEEEEEESSSTTSCTT-TCCEEEEECHHHHHHHHHHSCTTC--SCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeecchHhcCcc-hheEEEEcCHHHHHHHHHhcCCCC--cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            12367799999999998776 357888899999999887766554  344444433333   345677778888999999


Q ss_pred             HHHHHcCCCe
Q 012296          421 AKILEAHPKV  430 (466)
Q Consensus       421 a~~L~~~p~V  430 (466)
                      .+.|+++ ++
T Consensus       291 ~~~l~~~-g~  299 (365)
T 3get_A          291 KEFAKKH-NI  299 (365)
T ss_dssp             HHHHHHT-TC
T ss_pred             HHHHHhC-CC
Confidence            9999987 44

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.91  E-value=3.9e-23  Score=207.12  Aligned_cols=217  Identities=15%  Similarity=0.196  Sum_probs=170.2

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      +.+|+++...++++.++++++.  ++.+++++|++|+.+++.+++++||+|+++.+.|.+....    +...|.++.+++
T Consensus        45 ~~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~  120 (354)
T 3ly1_A           45 ANRYAKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHF----AKIAGMKVTKVK  120 (354)
T ss_dssp             TTSCCHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEEC
T ss_pred             CcCCCCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHHH----HHHcCCEEEEec
Confidence            3455678889999999999996  4566666777999999999999999999999999986543    445688888887


Q ss_pred             CC-----CHHHHHHhhcC-CCceEEEEeCCCCCCcccccHHHHHHHHHh--cCCEEEEeCCCCCCCcc----ccc----c
Q 012296          282 PA-----DMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ----KAL----S  345 (466)
Q Consensus       282 ~~-----Dle~Le~ai~~-~~tklV~lesP~NPtG~v~dl~~Ia~la~~--~gillIvDea~a~~~~~----~~l----~  345 (466)
                      ..     |+++|++++++ .++++|++++|+||||.+.+++++.++++.  +|+++|+|++|+.....    ...    .
T Consensus       121 ~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  200 (354)
T 3ly1_A          121 MLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQ  200 (354)
T ss_dssp             CCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHT
T ss_pred             CCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhh
Confidence            65     89999999983 249999999999999999999888888887  99999999998743221    111    2


Q ss_pred             c-CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHH
Q 012296          346 L-GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMA  421 (466)
Q Consensus       346 ~-gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La  421 (466)
                      . +.++++.|+||+++.+| .+.|++++++++++.++.....+  ..++...+++...+   +.+..+.++..++++.+.
T Consensus       201 ~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~  277 (354)
T 3ly1_A          201 GAENIILLKTFSKIHAMAG-MRVGYAVAHPTVIALMGRYVAGE--KINFSGVDAALASMNDSAFITYSKKSNDVSRQILL  277 (354)
T ss_dssp             TCSSEEEEEESSSTTCCGG-GCCEEEECCHHHHHHHGGGTTCS--CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeeChhhccChh-hhheeeecCHHHHHHHHHhcCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            2 56799999999998666 45799999999999887765543  34455444444333   446667778888999999


Q ss_pred             HHHHcC
Q 012296          422 KILEAH  427 (466)
Q Consensus       422 ~~L~~~  427 (466)
                      +.|+++
T Consensus       278 ~~l~~~  283 (354)
T 3ly1_A          278 KALEDL  283 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHC
Confidence            999875

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.91  E-value=1.2e-22  Score=207.39  Aligned_cols=212  Identities=15%  Similarity=0.160  Sum_probs=169.0

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHH
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~  287 (466)
                      ..+..+++++.+++++|.++++++++|++|+..++.+++++||+|+++.+.|+.+...    +...|.++..++..|+++
T Consensus        86 ~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~----~~~~g~~~~~v~~~d~~~  161 (398)
T 3a2b_A           86 TLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDG----SRLSFSKVIKYGHNNMED  161 (398)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHH----HHHSSSEEEEECTTCHHH
T ss_pred             CcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHH----HHHcCCceEEeCCCCHHH
Confidence            4578899999999999998888999999999999999999999999999999987643    345688888898889999


Q ss_pred             HHHhhcCC---CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc----ccccc-c----CCcEEEECC
Q 012296          288 LEAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----QKALS-L----GADLVLHSA  355 (466)
Q Consensus       288 Le~ai~~~---~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~----~~~l~-~----gaDivv~S~  355 (466)
                      |++++++.   ++++|++++|+||||.+.++++|.++|+++|+++|+|++|+.+..    ..... .    ++|+++.|+
T Consensus       162 l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~  241 (398)
T 3a2b_A          162 LRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTF  241 (398)
T ss_dssp             HHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEES
T ss_pred             HHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecc
Confidence            99999762   489999999999999999999999999999999999999876532    11111 1    269999999


Q ss_pred             ccccCccccceeEEEEeCHHHHHHHHHHH--HHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          356 TKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       356 sK~lgg~gdv~gG~ivg~~eli~~l~~~~--~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      ||+++++|    |++++++++++.++...  .......++..+..+...+   +.+..+.++..++++.+.+.|+++
T Consensus       242 sK~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  314 (398)
T 3a2b_A          242 SKSLASLG----GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH  314 (398)
T ss_dssp             SSTTCSSC----EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccCCC----cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc
Confidence            99999653    99999999998887642  2233344444433333333   333456677788899999999876

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.91  E-value=8e-23  Score=211.87  Aligned_cols=212  Identities=16%  Similarity=0.178  Sum_probs=173.0

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHH
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~  287 (466)
                      ..+...+|++.|++++|.+++++++||++|+..++.+++++||.|+++.+.|.++...+    ...|.++..++..|+++
T Consensus       107 ~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~----~~~g~~~~~~~~~d~~~  182 (427)
T 2w8t_A          107 TFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGC----QQGNAEIVRFRHNSVED  182 (427)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHH----HHSCSEEEEECTTCHHH
T ss_pred             CcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHH----HHcCCeeEEeCCCCHHH
Confidence            35778999999999999999999999999999999999999999999999999866443    34588888888889999


Q ss_pred             HHHhhcCC---CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc---------cccccCCcEEEECC
Q 012296          288 LEAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---------KALSLGADLVLHSA  355 (466)
Q Consensus       288 Le~ai~~~---~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~---------~~l~~gaDivv~S~  355 (466)
                      |++++++.   ++++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+...         ..+..++|+++.|+
T Consensus       183 le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~  262 (427)
T 2w8t_A          183 LDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTF  262 (427)
T ss_dssp             HHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEES
T ss_pred             HHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecc
Confidence            99999762   4899999999999999999999999999999999999998765332         11123579999999


Q ss_pred             ccccCccccceeEEEEeCHHHHHHHHHHH--HHhCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 012296          356 TKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       356 sK~lgg~gdv~gG~ivg~~eli~~l~~~~--~~~G~~lsp~~a~l~l~~L~tl---~~R~~~~~~na~~La~~L~~~  427 (466)
                      +|+++.+    ||++++++++++.++...  ..++...++..+..+...++.+   ..+.++..++++.+.+.|+++
T Consensus       263 sK~~g~~----gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  335 (427)
T 2w8t_A          263 SKSVGTV----GGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM  335 (427)
T ss_dssp             SSTTCSC----CEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccC----CCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            9999854    599999998888776542  2334556666655555555554   567788889999999999876

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.91  E-value=7.8e-23  Score=207.09  Aligned_cols=226  Identities=19%  Similarity=0.180  Sum_probs=170.3

Q ss_pred             CccccCCCchhHHHHHHHHHhhhC----CCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCce
Q 012296          201 SFEYGRYGNPTTVVVEEKMSALEG----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (466)
Q Consensus       201 ~~~Y~R~~np~~~~Lee~LA~l~g----~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~  276 (466)
                      .+.|+....+..+++++.+++.+|    .++.+++++|++|+.+++.+++++||+|+++.+.|.+....+    ...|.+
T Consensus        57 ~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~----~~~g~~  132 (391)
T 3dzz_A           57 AFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVI----EGNGRR  132 (391)
T ss_dssp             CCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHH----HHTTCE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHH----HHcCCE
Confidence            456666556677788888888877    246667777789999999999999999999999999866443    456777


Q ss_pred             EEEeCC--------CCHHHHHHhhcCCCceEEEEeCCCCCCccc---ccHHHHHHHHHhcCCEEEEeCCCCCCCc-----
Q 012296          277 ATVIDP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRC---VDVKLVSDLCHKKGAIVCIDGTFATPLN-----  340 (466)
Q Consensus       277 v~~vd~--------~Dle~Le~ai~~~~tklV~lesP~NPtG~v---~dl~~Ia~la~~~gillIvDea~a~~~~-----  340 (466)
                      +..++.        .|+++|++++++.++++|++++|+||+|.+   .++++|+++|+++|+++|+|++|+....     
T Consensus       133 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~  212 (391)
T 3dzz_A          133 VISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDI  212 (391)
T ss_dssp             EEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC
T ss_pred             EEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCc
Confidence            777664        589999999984459999999999999999   5689999999999999999999875322     


Q ss_pred             ccccccC---Cc--EEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhC-CCchHHHHHHHHHhh----HHHHHH
Q 012296          341 QKALSLG---AD--LVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG-GALNPNAAYLIIRGM----KTLHLR  409 (466)
Q Consensus       341 ~~~l~~g---aD--ivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G-~~lsp~~a~l~l~~L----~tl~~R  409 (466)
                      .....++   .|  +++.|+||+++.+| .+.|+++++ +++++.++......+ ...++...+.+...+    +.++.+
T Consensus       213 ~~~~~~~~~~~d~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  291 (391)
T 3dzz_A          213 TPAFTVDWDAKNWVVSLISPSKTFNLAA-LHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLREL  291 (391)
T ss_dssp             CCGGGSCTTTGGGEEEEECSHHHHTCTT-TCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHH
T ss_pred             eehhhcCccccCcEEEEEeChhhccccc-hhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHH
Confidence            1122222   45  99999999998666 357888886 889988887654333 233333333333333    336667


Q ss_pred             HHHHHHHHHHHHHHHHc-CCCeE
Q 012296          410 VQQQNSTALRMAKILEA-HPKVK  431 (466)
Q Consensus       410 ~~~~~~na~~La~~L~~-~p~V~  431 (466)
                      .++..++++.+.+.|++ .|++.
T Consensus       292 ~~~~~~~~~~l~~~l~~~~~~~~  314 (391)
T 3dzz_A          292 KQVLRDNFAYAREFLAKEVPEVK  314 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSE
T ss_pred             HHHHHHHHHHHHHHHHhhCCCcE
Confidence            77788899999999998 77764

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.91  E-value=2.6e-23  Score=209.68  Aligned_cols=220  Identities=15%  Similarity=0.238  Sum_probs=169.5

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      +.+|+++...++++.+++++|.   ++.+++++|++|+.+++.+++++||+|+++.+.|.+....    +...|.++..+
T Consensus        61 ~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v  136 (367)
T 3euc_A           61 LNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMS----AQFAGLEFVGV  136 (367)
T ss_dssp             TTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHH----HHTTTCEEEEE
T ss_pred             hhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHH----HHHcCCeEEEe
Confidence            3445567788999999999997   4455555666999999999999999999999999986643    34568888777


Q ss_pred             CC-----CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhc--CCEEEEeCCCCCCCcc----ccccc
Q 012296          281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKK--GAIVCIDGTFATPLNQ----KALSL  346 (466)
Q Consensus       281 d~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~--gillIvDea~a~~~~~----~~l~~  346 (466)
                      +.     .|+++|++++++.++++|++++|+||||.+.+   +++|+++|++|  |+++|+|++|+.....    .....
T Consensus       137 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~  216 (367)
T 3euc_A          137 PLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDF  216 (367)
T ss_dssp             ECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTC
T ss_pred             cCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhC
Confidence            53     48999999998734899999999999999974   67788889999  9999999998753221    11234


Q ss_pred             CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHH
Q 012296          347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKI  423 (466)
Q Consensus       347 gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~  423 (466)
                      +.++++.|+||+ +.+| .+.|++++++++++.++.....++  .++..++.+...+   +.+..+.++..++++.+.+.
T Consensus       217 ~~~i~~~s~sK~-~~~G-~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~  292 (367)
T 3euc_A          217 GNLLVMRTVSKL-GLAG-IRLGYVAGDPQWLEQLDKVRPPYN--VNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEG  292 (367)
T ss_dssp             TTEEEEEECCCT-TSCS-CCEEEEEECHHHHHHHGGGCCSSC--CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecchhh-cccc-cCceeeeeCHHHHHHHHHhCCCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            567999999999 6665 468999999999988876554333  3444444444333   44677778888999999999


Q ss_pred             HHcCCCeE
Q 012296          424 LEAHPKVK  431 (466)
Q Consensus       424 L~~~p~V~  431 (466)
                      |+++|++.
T Consensus       293 l~~~~g~~  300 (367)
T 3euc_A          293 MAAHGGVT  300 (367)
T ss_dssp             HHTSTTCE
T ss_pred             HHhCCCcE
Confidence            99998876

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.91  E-value=1.1e-22  Score=205.27  Aligned_cols=215  Identities=15%  Similarity=0.097  Sum_probs=164.7

Q ss_pred             chhHHHHHHHHHhhhCCC--c-EEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC---
Q 012296          209 NPTTVVVEEKMSALEGAE--S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e--~-~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---  282 (466)
                      .+..+++++.+++++|.+  + .+++++|++|+.+++.+++++||+|+++++.|++..  +...+...|.++..++.   
T Consensus        52 ~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  129 (386)
T 2dr1_A           52 RKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKR--YKEVVESNGRKAVVLEYEPG  129 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHH--HHHHHHHhCCceEEEecCCC
Confidence            577889999999999986  5 445567779999999999999999999999998731  22344556888877764   


Q ss_pred             --CCHHHHHHhhcC-CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECCccc
Q 012296          283 --ADMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKF  358 (466)
Q Consensus       283 --~Dle~Le~ai~~-~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~sK~  358 (466)
                        .|+++|++++++ .++++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+.. .....+++|+++.|+||+
T Consensus       130 ~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~  209 (386)
T 2dr1_A          130 KAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKA  209 (386)
T ss_dssp             CCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTST
T ss_pred             CCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEecccc
Confidence              589999999942 2489999999999999999999999999999999999999876543 233345789999999999


Q ss_pred             cCccccceeEEEEeCHHHHHHHH----------------HHH--HHhCCCchHHHHHHHHHhhHH------HHHHHHHHH
Q 012296          359 IGGHNDVLAGSISGSGKLVTQIR----------------NLH--HVLGGALNPNAAYLIIRGMKT------LHLRVQQQN  414 (466)
Q Consensus       359 lgg~gdv~gG~ivg~~eli~~l~----------------~~~--~~~G~~lsp~~a~l~l~~L~t------l~~R~~~~~  414 (466)
                      ++++++  +|+++++++++++++                ...  .....+.++...+.+...++.      ++.+.++..
T Consensus       210 ~~~~~g--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~  287 (386)
T 2dr1_A          210 FGVPPG--LAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYE  287 (386)
T ss_dssp             TCCCSS--CEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccCCCc--eEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            998742  699999999887762                121  122234444444444334433      445677788


Q ss_pred             HHHHHHHHHHHcC
Q 012296          415 STALRMAKILEAH  427 (466)
Q Consensus       415 ~na~~La~~L~~~  427 (466)
                      ++++.+.+.|+++
T Consensus       288 ~~~~~l~~~L~~~  300 (386)
T 2dr1_A          288 KRAKMVREGVREI  300 (386)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc
Confidence            8999999999876

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.91  E-value=1.6e-22  Score=204.76  Aligned_cols=224  Identities=15%  Similarity=0.137  Sum_probs=172.0

Q ss_pred             CccccCCCchhHHHHHHHHHhhhC--C--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCce
Q 012296          201 SFEYGRYGNPTTVVVEEKMSALEG--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (466)
Q Consensus       201 ~~~Y~R~~np~~~~Lee~LA~l~g--~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~  276 (466)
                      .+.|+....+..+++++.+++++|  .  ++.+++++|++|+.+++.+++++||+|+++.+.|.+....+    ...|.+
T Consensus        62 ~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~----~~~g~~  137 (391)
T 4dq6_A           62 IYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVV----KNNNRE  137 (391)
T ss_dssp             CCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHH----HHTTCE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHH----HHcCCe
Confidence            466777777888999999999988  3  56777788889999999999999999999999999866433    456788


Q ss_pred             EEEeCCC---------CHHHHHHhhcCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCcc---
Q 012296          277 ATVIDPA---------DMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ---  341 (466)
Q Consensus       277 v~~vd~~---------Dle~Le~ai~~~~tklV~lesP~NPtG~v~---dl~~Ia~la~~~gillIvDea~a~~~~~---  341 (466)
                      +..++..         |+++|++++++  +++|++++|+||||.+.   ++++|+++|+++|+++|+|++|+.....   
T Consensus       138 ~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~  215 (391)
T 4dq6_A          138 LIISPLQKLENGNYIMDYEDIENKIKD--VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHK  215 (391)
T ss_dssp             EEECCCEECTTSCEECCHHHHHHHCTT--EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC
T ss_pred             EEeeeeeecCCCceEeeHHHHHHHhhc--CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCC
Confidence            7777543         89999999976  89999999999999994   6888999999999999999998753221   


Q ss_pred             --ccccc-----CCcEEEECCccccCccccceeEEEEeCH-HHHHHHHHHHHHhCC-CchHHHHHHHHHhh----HHHHH
Q 012296          342 --KALSL-----GADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGG-ALNPNAAYLIIRGM----KTLHL  408 (466)
Q Consensus       342 --~~l~~-----gaDivv~S~sK~lgg~gdv~gG~ivg~~-eli~~l~~~~~~~G~-~lsp~~a~l~l~~L----~tl~~  408 (466)
                        ....+     +.++++.|+||.++.+| .+.|++++++ ++++.++......+. +.++..+..+...+    +.++.
T Consensus       216 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  294 (391)
T 4dq6_A          216 HIPMASISKEFEKNTITCMAPTKTFNIAG-LQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLES  294 (391)
T ss_dssp             CCCGGGSCHHHHHTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHH
T ss_pred             ccCHHHcCccccCcEEEEEechhhccCcc-cceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHH
Confidence              11122     23489999999998666 3578888775 888888876554432 44554444333333    33566


Q ss_pred             HHHHHHHHHHHHHHHHHc-CCCeE
Q 012296          409 RVQQQNSTALRMAKILEA-HPKVK  431 (466)
Q Consensus       409 R~~~~~~na~~La~~L~~-~p~V~  431 (466)
                      +.++..++++.+.+.|++ .|++.
T Consensus       295 ~~~~~~~~~~~l~~~l~~~~~~~~  318 (391)
T 4dq6_A          295 FLEYLESNIDFAIKYINENMPKLK  318 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTSE
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCE
Confidence            677788899999999988 57764

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.91  E-value=5.5e-23  Score=209.63  Aligned_cols=219  Identities=15%  Similarity=0.180  Sum_probs=172.6

Q ss_pred             CCchhHHHHHHHHHhhhCC-----CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          207 YGNPTTVVVEEKMSALEGA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~-----e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ...+..+++++.+++++|.     ++++++++|++|+..++.+++++||+|+++.+.|.+....    +...|.++..++
T Consensus        79 g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~  154 (407)
T 3nra_A           79 GDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKL----VEFFEGEMVPVQ  154 (407)
T ss_dssp             CCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHH----HHHTTCEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHH----HHHcCCEEEEee
Confidence            3456788889999998886     4666767777999999999999999999999999986543    344677776665


Q ss_pred             C-----------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc-------
Q 012296          282 P-----------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-------  340 (466)
Q Consensus       282 ~-----------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~-------  340 (466)
                      .           .|+++|+++++++ +++|++++|+||||.+.+   +++|+++|++||+++|+|++|+....       
T Consensus       155 ~~~~~~~~~~~~~d~~~l~~~l~~~-~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~  233 (407)
T 3nra_A          155 LDYVSADETRAGLDLTGLEEAFKAG-ARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTH  233 (407)
T ss_dssp             BCCCSSCCSSCCBCHHHHHHHHHTT-CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCC
T ss_pred             cccccccCcCCCcCHHHHHHHHhhC-CcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCC
Confidence            4           2799999999874 899999999999999998   89999999999999999999875321       


Q ss_pred             cccc---ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHH
Q 012296          341 QKAL---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQ  413 (466)
Q Consensus       341 ~~~l---~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~  413 (466)
                      ...+   ..+.++++.|+||.++.+| .+.|++++++++++.++.....+....++..++++...+    +.++.++++.
T Consensus       234 ~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  312 (407)
T 3nra_A          234 LRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARH  312 (407)
T ss_dssp             GGGCTTSCGGGEEEEECSSSTTCCGG-GCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHH
T ss_pred             hhhcCcccCCcEEEEeCcccccCCCe-eeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccchHHHHHHHHH
Confidence            1111   1345799999999998666 357899999999999988777666655666555444433    3467777888


Q ss_pred             HHHHHHHHHHHHcCCCeE
Q 012296          414 NSTALRMAKILEAHPKVK  431 (466)
Q Consensus       414 ~~na~~La~~L~~~p~V~  431 (466)
                      .++++.+.+.|+++|++.
T Consensus       313 ~~~~~~l~~~L~~~~~~~  330 (407)
T 3nra_A          313 QAIRDELLHVLRGCEGVF  330 (407)
T ss_dssp             HHHHHHHHHHHHTSTTCB
T ss_pred             HHHHHHHHHHHhcCCCce
Confidence            899999999999887664

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.91  E-value=3e-23  Score=208.27  Aligned_cols=223  Identities=15%  Similarity=0.153  Sum_probs=165.3

Q ss_pred             CccccCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc----cCCCEEEEcCCCCcchHHHHHhhcccCC
Q 012296          201 SFEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMG  274 (466)
Q Consensus       201 ~~~Y~R~~np~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all----~~Gd~Vlv~~~~y~~t~~~~~~~l~~~G  274 (466)
                      .|.|++...+..+++++.+++++|.+  +.+++++|++|+.+++.+++    ++||+|+++++.|++....+. .+...|
T Consensus        34 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~-~~~~~g  112 (382)
T 4hvk_A           34 VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQG  112 (382)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHHHTT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHH-HHHhcC
Confidence            35555566788889999999999984  35566667799999999887    999999999999998766553 345568


Q ss_pred             ceEEEeCCC-----CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCC
Q 012296          275 ITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGA  348 (466)
Q Consensus       275 i~v~~vd~~-----Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~ga  348 (466)
                      +++.+++..     |+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|+ +|+|++++.+.. ......++
T Consensus       113 ~~~~~v~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~  190 (382)
T 4hvk_A          113 FEVEYIPVGKYGEVDVSFIDQKLRDD-TILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKIGA  190 (382)
T ss_dssp             CEEEEECBCTTSCBCHHHHHHHCCTT-EEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHHTC
T ss_pred             CEEEEeccCCCCCcCHHHHHHHhccC-ceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhcCC
Confidence            888888753     899999999875 9999999999999999999999999999999 999999876543 23334579


Q ss_pred             cEEEECCccccCccccceeEEEEeCHHHHHHHHHHH-------HHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-------HVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTA  417 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~-------~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~na  417 (466)
                      |+++.|+||+++++|   .|+++.+++.  .++...       ....+..+....+.+...+    +.++.+.++..+++
T Consensus       191 d~~~~s~~K~~g~~g---~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~  265 (382)
T 4hvk_A          191 DMLTISSNDIYGPKG---VGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLR  265 (382)
T ss_dssp             SEEEEESGGGTSCTT---CEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeHHHhcCCCc---eEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            999999999887665   4666555443  111111       0112223333332222222    34456667788889


Q ss_pred             HHHHHHHHcCCCeE
Q 012296          418 LRMAKILEAHPKVK  431 (466)
Q Consensus       418 ~~La~~L~~~p~V~  431 (466)
                      +.+.+.|+++|++.
T Consensus       266 ~~l~~~L~~~~~~~  279 (382)
T 4hvk_A          266 DRIIDNVLKIEESY  279 (382)
T ss_dssp             HHHHHHHTTSTTEE
T ss_pred             HHHHHHHhcCCCeE
Confidence            99999999888875

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.91  E-value=2e-23  Score=213.39  Aligned_cols=204  Identities=22%  Similarity=0.199  Sum_probs=165.9

Q ss_pred             HHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHH
Q 012296          212 TVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (466)
Q Consensus       212 ~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~L  288 (466)
                      .+.+++.+++++|.   ++++++++|++|+.+++.++  +||+|+++++.|+++...+. .+...|+++.++  .|+++|
T Consensus        60 ~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v--~d~~~l  134 (374)
T 2aeu_A           60 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIER-SCKIVNAKYFES--DKVGEI  134 (374)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHH-HHHHTTCEEEEE--SCHHHH
T ss_pred             HHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHH-HHHHcCcEEEEe--CCHHHH
Confidence            45677778888898   67888899999999999887  99999999999988665543 456678888888  689999


Q ss_pred             HHhhcCCCceE-EEEeCCCCCCc-ccccHHHHHHHHHhcCCEEEEeCCCCCCC---ccc--ccccCCcEEEECCccccCc
Q 012296          289 EAALNNNNVSL-FFTESPTNPFL-RCVDVKLVSDLCHKKGAIVCIDGTFATPL---NQK--ALSLGADLVLHSATKFIGG  361 (466)
Q Consensus       289 e~ai~~~~tkl-V~lesP~NPtG-~v~dl~~Ia~la~~~gillIvDea~a~~~---~~~--~l~~gaDivv~S~sK~lgg  361 (466)
                      +++ ++ ++++ |++++|+||+| ...++++|.++|+++|+++|+|++++...   ...  +...+.|+++.|+||+++|
T Consensus       135 ~~~-~~-~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g  212 (374)
T 2aeu_A          135 LNK-ID-KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG  212 (374)
T ss_dssp             HTT-CC-TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS
T ss_pred             Hhc-CC-CccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccC
Confidence            988 65 4999 99999999999 88899999999999999999999986543   111  4556889999999999887


Q ss_pred             cccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHH-HHHHHHHHHHHH----HHHHH
Q 012296          362 HNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL-RVQQQNSTALRM----AKILE  425 (466)
Q Consensus       362 ~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~~-R~~~~~~na~~L----a~~L~  425 (466)
                      +   ++|+++++++++++++.....++...++..++++...++.+.. +++++.++++.+    .+.|+
T Consensus       213 ~---~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~  278 (374)
T 2aeu_A          213 P---RGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLN  278 (374)
T ss_dssp             C---SCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             c---ceEEEEECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5   4799999999999998877777777788887777777776544 667777777666    45554

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.90  E-value=6.4e-22  Score=199.95  Aligned_cols=209  Identities=15%  Similarity=0.266  Sum_probs=166.2

Q ss_pred             hHHHHHHHHHhhhC------C--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          211 TTVVVEEKMSALEG------A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       211 ~~~~Lee~LA~l~g------~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ...++++.++++++      .  ++++++++|++|+.+++.+++++||+|+++++.|++....    +...|.++..++ 
T Consensus        67 ~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~-  141 (370)
T 2z61_A           67 GILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNF----IRFLGAKPVFCD-  141 (370)
T ss_dssp             CCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHH----HHHTTCEEEEEC-
T ss_pred             CCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHH----HHHcCCEEEEeC-
Confidence            35678888887763      2  5677778888999999999999999999999999986543    345688888888 


Q ss_pred             CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc----ccccc----cCCcEEEEC
Q 012296          283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----QKALS----LGADLVLHS  354 (466)
Q Consensus       283 ~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~----~~~l~----~gaDivv~S  354 (466)
                      .|+++|+++++++ +++|++++|+||+|.+.+++ |.++|+++|+++|+|++|.....    .....    .+.|+++.|
T Consensus       142 ~d~~~l~~~l~~~-~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s  219 (370)
T 2z61_A          142 FTVESLEEALSDK-TKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILING  219 (370)
T ss_dssp             SSHHHHHHHCCSS-EEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEE
T ss_pred             CCHHHHHHhcccC-ceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEec
Confidence            7899999999874 99999999999999999999 99999999999999999875432    11222    367899999


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHcC
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~-----tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      +||+++.+| .+.|++++++++++.++........+.++...+.+...++     .++...++..++++.+.+.|+++
T Consensus       220 ~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  296 (370)
T 2z61_A          220 FSKLYAMTG-WRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF  296 (370)
T ss_dssp             STTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ChhccCCcc-ceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999998666 4579999999999998877666555556666555554443     34445666778888999999876

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.90  E-value=2.1e-22  Score=203.68  Aligned_cols=218  Identities=17%  Similarity=0.245  Sum_probs=163.9

Q ss_pred             cCCCchhHHHHHHHHHhhhCCC-cEEEeCCH-HHHHHHHHHHHccCC-CEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          205 GRYGNPTTVVVEEKMSALEGAE-STVIMASG-MSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~e-~~l~~sSG-s~Ai~~al~all~~G-d~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      .+|+++...++++.+|++++.+ +.+++++| ++++.+++.+++++| |+|+++.|+|++....+    ...|.++..++
T Consensus        53 ~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~----~~~g~~~~~v~  128 (356)
T 1fg7_A           53 NRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSA----ETIGVECRTVP  128 (356)
T ss_dssp             TSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHH----HHHTCEEEECC
T ss_pred             ccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHH----HHcCCEEEEee
Confidence            4455556789999999999874 44555555 599999999999999 99999999999866443    34577777775


Q ss_pred             C-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHH---HHHHHhcCCEEEEeCCCCCCCc-ccc----cccCC
Q 012296          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLV---SDLCHKKGAIVCIDGTFATPLN-QKA----LSLGA  348 (466)
Q Consensus       282 ~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~I---a~la~~~gillIvDea~a~~~~-~~~----l~~ga  348 (466)
                      .     .|+++++++++  ++++|++++|+||||.+.+.++|   +++|+ +|+++|+|++|..... ...    ...+.
T Consensus       129 ~~~~~~~d~~~l~~~i~--~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~  205 (356)
T 1fg7_A          129 TLDNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPH  205 (356)
T ss_dssp             CCTTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTT
T ss_pred             CCCCCCCCHHHHHHHhc--CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCC
Confidence            3     47899999887  49999999999999999986555   45555 8999999999875431 111    12356


Q ss_pred             cEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAKI  423 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~t-----l~~R~~~~~~na~~La~~  423 (466)
                      ++++.|+||+++.+| .+.|++++++++++.++..+..+  +.++..+.++...++.     +..+.++..++++.+.+.
T Consensus       206 ~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  282 (356)
T 1fg7_A          206 LAILRTLSKAFALAG-LRCGFTLANEEVINLLMKVIAPY--PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAA  282 (356)
T ss_dssp             EEEEEESSSTTCCGG-GCCEEEEECHHHHHHHHHHSCSS--CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecchHhhcCch-hhhEEEEeCHHHHHHHHHhcCCC--CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999998776 35789999999999888765544  3455555444444432     556667788889999999


Q ss_pred             HHcCCCeEE
Q 012296          424 LEAHPKVKR  432 (466)
Q Consensus       424 L~~~p~V~~  432 (466)
                      |++++++..
T Consensus       283 L~~~~~~~~  291 (356)
T 1fg7_A          283 LKEIPCVEQ  291 (356)
T ss_dssp             HHHSTTEEE
T ss_pred             HHhCCCceE
Confidence            999886543

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.90  E-value=1.4e-22  Score=208.02  Aligned_cols=210  Identities=11%  Similarity=0.116  Sum_probs=168.9

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHH
Q 012296          210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE  289 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le  289 (466)
                      +..+++++++++++|.+..+++++|++|+..++.+++++||.|+++++.|+++...+    ...|.++..++..|+++|+
T Consensus       104 ~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~~~d~~~le  179 (409)
T 3kki_A          104 YDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGA----RYANAQAHPFMHNNCDHLR  179 (409)
T ss_dssp             TTSCHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHH----HHTTCEEEEECTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCeEEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHH----HHcCCeEEEecCCCHHHHH
Confidence            556789999999999999999999999999999999999999999999999866433    3457888888888999999


Q ss_pred             HhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-------c--ccccCCcEEEECCccccC
Q 012296          290 AALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------K--ALSLGADLVLHSATKFIG  360 (466)
Q Consensus       290 ~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~-------~--~l~~gaDivv~S~sK~lg  360 (466)
                      ++++++++++|++++|+||+|.+.++++|.++|+++|++||+|++|+.+...       .  ....++|+++.|++|+++
T Consensus       180 ~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~  259 (409)
T 3kki_A          180 MLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFA  259 (409)
T ss_dssp             HHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC
T ss_pred             HHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhC
Confidence            9998644899999999999999999999999999999999999998754321       0  112257899999999999


Q ss_pred             ccccceeEEEEeCHHHHHHHHHHH--HHhCCCchHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 012296          361 GHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       361 g~gdv~gG~ivg~~eli~~l~~~~--~~~G~~lsp~~a~l~l~~L~tl---~~R~~~~~~na~~La~~L~~~  427 (466)
                      ++    +|++++++++++.++...  ..++...++..+..++..++.+   ....++..++++.+.+.|++.
T Consensus       260 ~~----gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~  327 (409)
T 3kki_A          260 YR----AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL  327 (409)
T ss_dssp             SS----CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CC----ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            76    499999998888776532  2345555665554444444443   455667788899999999876

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.90  E-value=2e-22  Score=203.73  Aligned_cols=219  Identities=13%  Similarity=0.091  Sum_probs=167.6

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC----
Q 012296          210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----  282 (466)
                      +...++++.|++++|.+  +++++++|++|+.+++.++ +++||+|+++.+.|++....+....+..|.++..++.    
T Consensus        59 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  138 (390)
T 1elu_A           59 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATL  138 (390)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGS
T ss_pred             HHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCC
Confidence            67889999999999974  6777788889999999999 8999999999999998765444444556888888765    


Q ss_pred             ---CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHH----hcCCEEEEeCCCCCCCc-ccccccCCcEEEEC
Q 012296          283 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH----KKGAIVCIDGTFATPLN-QKALSLGADLVLHS  354 (466)
Q Consensus       283 ---~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~----~~gillIvDea~a~~~~-~~~l~~gaDivv~S  354 (466)
                         .|+++|+++++++ +++|++++|+||+|.+.|+++|.++|+    ++|+++|+|++++.+.. ......++|+++.|
T Consensus       139 ~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s  217 (390)
T 1elu_A          139 NQGDAAAVLANHLGPK-TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFT  217 (390)
T ss_dssp             SSSCHHHHHHTTCCTT-EEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEE
T ss_pred             CccchHHHHHHhcCCC-ceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEcc
Confidence               3689999999874 999999999999999999999999999    99999999999875432 12224578999999


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHHH----------------------HHhCCCchHHHHH---HHHHhhHH---H
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLH----------------------HVLGGALNPNAAY---LIIRGMKT---L  406 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~~----------------------~~~G~~lsp~~a~---l~l~~L~t---l  406 (466)
                      ++|++.++.  ..|+++++++++++++...                      ....++.++....   .++..++.   +
T Consensus       218 ~~K~~~~~~--g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~  295 (390)
T 1elu_A          218 GHKWFAGPA--GVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTA  295 (390)
T ss_dssp             SSSTTCCCT--TCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCH
T ss_pred             ccccccCCC--ceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCH
Confidence            999665553  2589999988877654321                      1112233333222   23333333   5


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCeE
Q 012296          407 HLRVQQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       407 ~~R~~~~~~na~~La~~L~~~p~V~  431 (466)
                      ..+.++..++++.+.+.|+++|++.
T Consensus       296 ~~~~~~~~~~~~~l~~~L~~~~g~~  320 (390)
T 1elu_A          296 EERYQAICQRSEFLWRGLNQLPHVH  320 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcE
Confidence            6677888899999999999988764

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.90  E-value=1.3e-22  Score=205.51  Aligned_cols=211  Identities=20%  Similarity=0.274  Sum_probs=174.9

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC---
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  283 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---  283 (466)
                      .++...++|+.+++++|.+++++++||++|+..++.++ +++||+|+++.+.|.++...+    ...|.++.+++..   
T Consensus        33 ~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~----~~~G~~~~~~~~~~~~  108 (367)
T 3nyt_A           33 LGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETV----ALLGAKPVYVDIDPRT  108 (367)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECBCTTT
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHH----HHcCCEEEEEecCCcc
Confidence            56889999999999999999999999999999999999 899999999999999876443    4568888887643   


Q ss_pred             ---CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCC--cEEEECC--c
Q 012296          284 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA--DLVLHSA--T  356 (466)
Q Consensus       284 ---Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~ga--Divv~S~--s  356 (466)
                         |+++|+++++++ +++|+   |+||+|...|+++|.++|+++|+++|+|++++.+........+.  |+++.|+  +
T Consensus       109 ~~~d~~~l~~~i~~~-~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~~  184 (367)
T 3nyt_A          109 YNLDPQLLEAAITPR-TKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPS  184 (367)
T ss_dssp             CSBCGGGTGGGCCTT-EEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEECCTT
T ss_pred             CCcCHHHHHHhcCcC-CcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEECCCC
Confidence               789999999874 88888   78899999999999999999999999999988654433333333  9999996  8


Q ss_pred             cccCccccceeEEEEe-CHHHHHHHHHHHHH------------hCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012296          357 KFIGGHNDVLAGSISG-SGKLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKI  423 (466)
Q Consensus       357 K~lgg~gdv~gG~ivg-~~eli~~l~~~~~~------------~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~  423 (466)
                      |++++.|.  +|++++ ++++.++++..+..            ++..+++..+.+++..++.++.+.++..++++.+.+.
T Consensus       185 K~l~~~g~--gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~  262 (367)
T 3nyt_A          185 APLGCYGD--GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLS  262 (367)
T ss_dssp             SSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCcCc--eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998663  788887 57788887765432            2345678888888888888888888889999999999


Q ss_pred             HHcCC
Q 012296          424 LEAHP  428 (466)
Q Consensus       424 L~~~p  428 (466)
                      |++.+
T Consensus       263 L~~~~  267 (367)
T 3nyt_A          263 LKQVG  267 (367)
T ss_dssp             HHHTT
T ss_pred             hccCC
Confidence            99874

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.90  E-value=1.2e-22  Score=204.65  Aligned_cols=214  Identities=17%  Similarity=0.171  Sum_probs=162.8

Q ss_pred             chhHHHHHHHHHhhhCCCc----EEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC-
Q 012296          209 NPTTVVVEEKMSALEGAES----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-  283 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~----~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-  283 (466)
                      .+..+++++++++++|.+.    ++++++|++|+. ++.+++++||+|+++++.|.+.  .+...+...|.++..++.. 
T Consensus        34 ~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~  110 (384)
T 3zrp_A           34 VEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVSNGVFGD--RWEQIFKRYPVNVKVLRPSP  110 (384)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEECSSHHHH--HHHHHHTTSSCEEEEECCST
T ss_pred             HHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEecCCcchH--HHHHHHHHcCCcEEEecCCC
Confidence            5667889999999999854    666677789999 9989999999999999998763  2334456678888888743 


Q ss_pred             ----CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECCccc
Q 012296          284 ----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKF  358 (466)
Q Consensus       284 ----Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~sK~  358 (466)
                          |+++|++++++.++++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+.. ......++|+++.|+||+
T Consensus       111 ~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~  190 (384)
T 3zrp_A          111 GDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKA  190 (384)
T ss_dssp             TCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTST
T ss_pred             CCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCccc
Confidence                899999999874499999999999999999999999999999999999999875443 233456799999999999


Q ss_pred             cCccccceeEEEEeCHHHHHHH-------------HHHHHHh-------C---CCchHHHHHHHHHhhHH-----HHHHH
Q 012296          359 IGGHNDVLAGSISGSGKLVTQI-------------RNLHHVL-------G---GALNPNAAYLIIRGMKT-----LHLRV  410 (466)
Q Consensus       359 lgg~gdv~gG~ivg~~eli~~l-------------~~~~~~~-------G---~~lsp~~a~l~l~~L~t-----l~~R~  410 (466)
                      ++++.  .+|++++++++++++             ..+....       +   ++.+......+...++.     ++...
T Consensus       191 ~~~~~--g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~  268 (384)
T 3zrp_A          191 LGSAA--GLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRI  268 (384)
T ss_dssp             TCCCS--SEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             ccCCC--ceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence            97654  268999999988776             3222111       0   13333332222222222     45566


Q ss_pred             HHHHHHHHHHHHHHHcC
Q 012296          411 QQQNSTALRMAKILEAH  427 (466)
Q Consensus       411 ~~~~~na~~La~~L~~~  427 (466)
                      ++..++++.+.+.|+++
T Consensus       269 ~~~~~~~~~l~~~L~~~  285 (384)
T 3zrp_A          269 KRHTMVASAIRAGLEAL  285 (384)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHC
Confidence            77788899999999876

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.90  E-value=2.3e-22  Score=202.66  Aligned_cols=219  Identities=12%  Similarity=0.130  Sum_probs=165.3

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      +.+|+++...++++.+++++|.  ++++++++|++|+.+++.+++++||+|+++.+.|.+....    +...|.++..++
T Consensus        59 ~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~v~  134 (360)
T 3hdo_A           59 LRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTL----AEVQGARVRTFG  134 (360)
T ss_dssp             GGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHH----HHHHTCEEEEEC
T ss_pred             hhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHH----HHHCCCEEEEee
Confidence            4455666678999999999985  5778888888999999999999999999999999986643    345688888876


Q ss_pred             CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccc----cccCCcEEEECCcc
Q 012296          282 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA----LSLGADLVLHSATK  357 (466)
Q Consensus       282 ~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~----l~~gaDivv~S~sK  357 (466)
                      ..+...+++.++..++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.......    ...+.++++.|++|
T Consensus       135 ~~~~~~~~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK  214 (360)
T 3hdo_A          135 LTGDFRIAGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSK  214 (360)
T ss_dssp             BCTTSSBTTCCSSBCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTT
T ss_pred             CCCCCCHHHHHhhcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchH
Confidence            54321222222222368999999999999999999999999999999999999874211111    12356799999999


Q ss_pred             ccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHcCCCe
Q 012296          358 FIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII---RGMKTLHLRVQQQNSTALRMAKILEAHPKV  430 (466)
Q Consensus       358 ~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l---~~L~tl~~R~~~~~~na~~La~~L~~~p~V  430 (466)
                      .++.+| .+.|++++++++++.++.....++  .++..++++.   ...+.+..+.++..++++.+.+.|+++ ++
T Consensus       215 ~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~  286 (360)
T 3hdo_A          215 SYSLAG-MRIGLAIARPEVIAALDKIRDHYN--LDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI-GY  286 (360)
T ss_dssp             TTSCTT-SCCEEEECCHHHHHHHHHHSCSCC--SCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             hhcCCc-cceeeEeeCHHHHHHHHHhCCCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            998776 457999999999998887665433  4444444433   333446677788889999999999887 44

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.90  E-value=4.1e-22  Score=201.16  Aligned_cols=216  Identities=14%  Similarity=0.124  Sum_probs=164.2

Q ss_pred             CCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC
Q 012296          206 RYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  283 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~  283 (466)
                      +|+++...++++.++++++.+  +.+++++|++++.+++..+  +||+|++..|.|++....+    ...|.++..++..
T Consensus        55 ~y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~--~gd~vl~~~p~y~~~~~~~----~~~g~~~~~v~~~  128 (364)
T 1lc5_A           55 RYPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRAL----AQSGCEIRRWSLR  128 (364)
T ss_dssp             SCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHH----HHTTCEEEEEECC
T ss_pred             cCCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc--CCCeEEEeCCCcHHHHHHH----HHcCCeEEEEeCC
Confidence            344556789999999999873  5666666779999999888  7899999999999865433    4457777776543


Q ss_pred             -----C-HHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc-----ccc-cccCC
Q 012296          284 -----D-MEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKA-LSLGA  348 (466)
Q Consensus       284 -----D-le~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~-----~~~-l~~ga  348 (466)
                           + ++++.+.+++ ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.....     ... ...+.
T Consensus       129 ~~~~~~~l~~~~~~~~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  207 (364)
T 1lc5_A          129 EADGWQLTDAILEALTP-DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPH  207 (364)
T ss_dssp             GGGTTCCCTTHHHHCCT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTT
T ss_pred             cccccchhHHHHHhccC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCC
Confidence                 1 3556666655 4899999999999999998   89999999999999999999865321     111 12467


Q ss_pred             cEEEECCccccCccccceeEEEE-eCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKIL  424 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~iv-g~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~---tl~~R~~~~~~na~~La~~L  424 (466)
                      ++++.|+||+++.+| .+.|+++ ++++++++++.....+  ..++..++.+...++   .++.+.++..++++.+.+.|
T Consensus       208 ~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L  284 (364)
T 1lc5_A          208 IWVLRSLTKFYAIPG-LRLGYLVNSDDAAMARMRRQQMPW--SVNALAALAGEVALQDSAWQQATWHWLREEGARFYQAL  284 (364)
T ss_dssp             EEEEEESTTTTTCTT-TCCEEEECCCHHHHHHHHHHSCTT--CSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECchhhcCCc-cceEEEEECCHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999998766 3578998 9999998887765433  445666666555554   35556677788899999999


Q ss_pred             HcCCCeE
Q 012296          425 EAHPKVK  431 (466)
Q Consensus       425 ~~~p~V~  431 (466)
                      +++|++.
T Consensus       285 ~~~~~~~  291 (364)
T 1lc5_A          285 CQLPLLT  291 (364)
T ss_dssp             HTSTTEE
T ss_pred             hcCCCCE
Confidence            9888775

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.90  E-value=8.2e-22  Score=200.17  Aligned_cols=214  Identities=14%  Similarity=0.181  Sum_probs=162.5

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          212 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~----e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      ..++++.+++++    |.    ++.+++++|++|+.+++.+++++||+|+++++.|++....    +...|.++..++. 
T Consensus        69 ~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~~~  144 (388)
T 1j32_A           69 EPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEM----VKLAEGTPVILPTT  144 (388)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHH----HHHTTCEEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHHcCCEEEEecCC
Confidence            456666666655    42    4455556667999999999999999999999999986543    3456788777753 


Q ss_pred             ------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----cccc---
Q 012296          283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS---  345 (466)
Q Consensus       283 ------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----~~l~---  345 (466)
                            .|+++|+++++++ +++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+.....     ....   
T Consensus       145 ~~~~~~~d~~~l~~~l~~~-~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  223 (388)
T 1j32_A          145 VETQFKVSPEQIRQAITPK-TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASP  223 (388)
T ss_dssp             GGGTTCCCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCH
T ss_pred             cccCCCCCHHHHHHhcCcC-ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccc
Confidence                  2789999999874 999999999999999965   899999999999999999998753221     1111   


Q ss_pred             --cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHH
Q 012296          346 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALR  419 (466)
Q Consensus       346 --~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~na~~  419 (466)
                        .+.|+++.|+||+++.+| .+.|++++++++++.++..........++..++++...+    +.+....++..++++.
T Consensus       224 ~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  302 (388)
T 1j32_A          224 EAYERSVVCSGFAKTYAMTG-WRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRY  302 (388)
T ss_dssp             HHHHTEEEEEESTTTTTCTT-TCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEeechhccCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence              457899999999998676 357999999999998887665444444555444433333    3456667778889999


Q ss_pred             HHHHHHcCCCeE
Q 012296          420 MAKILEAHPKVK  431 (466)
Q Consensus       420 La~~L~~~p~V~  431 (466)
                      +.+.|+++|++.
T Consensus       303 l~~~L~~~~g~~  314 (388)
T 1j32_A          303 MLDALNAMPGLE  314 (388)
T ss_dssp             HHHHHHTCTTCB
T ss_pred             HHHHHhhCCCCc
Confidence            999999887764

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.90  E-value=3.8e-22  Score=206.01  Aligned_cols=228  Identities=19%  Similarity=0.156  Sum_probs=171.2

Q ss_pred             CccccCCCchhHHHHHHHHHhhhCC----CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCce
Q 012296          201 SFEYGRYGNPTTVVVEEKMSALEGA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (466)
Q Consensus       201 ~~~Y~R~~np~~~~Lee~LA~l~g~----e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~  276 (466)
                      .+.|+....+..+++.+.+++.++.    +..+++++|++|+.+++..++++||+|++..+.|++....+    ...|.+
T Consensus        91 ~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~----~~~g~~  166 (421)
T 3l8a_A           91 IFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTI----RLNDHR  166 (421)
T ss_dssp             CSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHH----HHTTEE
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHH----HHCCCE
Confidence            4677777777788888888888872    45666677779999999999999999999999999866443    345666


Q ss_pred             EEEeCC--------CCHHHHHHhhcCCCceEEEEeCCCCCCccc---ccHHHHHHHHHhcCCEEEEeCCCCCCCc-----
Q 012296          277 ATVIDP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRC---VDVKLVSDLCHKKGAIVCIDGTFATPLN-----  340 (466)
Q Consensus       277 v~~vd~--------~Dle~Le~ai~~~~tklV~lesP~NPtG~v---~dl~~Ia~la~~~gillIvDea~a~~~~-----  340 (466)
                      +..++.        .|+++|++++++.++++|++++|+||+|.+   .++++|.++|+++|++||+|++|.....     
T Consensus       167 ~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~  246 (421)
T 3l8a_A          167 LVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTH  246 (421)
T ss_dssp             EEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC
T ss_pred             EEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC
Confidence            665543        389999999983249999999999999998   4689999999999999999999865321     


Q ss_pred             ccccc-----cCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhCC-CchHHHHHHHHH----hhHHHHHH
Q 012296          341 QKALS-----LGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG-ALNPNAAYLIIR----GMKTLHLR  409 (466)
Q Consensus       341 ~~~l~-----~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G~-~lsp~~a~l~l~----~L~tl~~R  409 (466)
                      .....     .+.++++.|++|+++.+| ...|+++++ +++++.++......+. +.++..+..+..    ..+.++.+
T Consensus       247 ~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~  325 (421)
T 3l8a_A          247 HSLNTLDASYKDFTIILSSATKTFNIAG-TKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEEL  325 (421)
T ss_dssp             CCGGGSCTTGGGTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ccHHHcCchhcCcEEEEEeChhhccCch-hheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHH
Confidence            11111     245699999999998666 457888887 8898888776544332 445554433333    33446667


Q ss_pred             HHHHHHHHHHHHHHHHcCCCeEEE
Q 012296          410 VQQQNSTALRMAKILEAHPKVKRV  433 (466)
Q Consensus       410 ~~~~~~na~~La~~L~~~p~V~~V  433 (466)
                      .++..++++.+.+.|+++|++..+
T Consensus       326 ~~~~~~~~~~l~~~L~~~~~i~~~  349 (421)
T 3l8a_A          326 KTVIEGNIKLVIKELEAKTKIKVM  349 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSCEEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCceEe
Confidence            778888999999999887776543

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.90  E-value=2.7e-22  Score=204.96  Aligned_cols=210  Identities=15%  Similarity=0.209  Sum_probs=159.8

Q ss_pred             HHHHHHHHHhhhC------C---CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          212 TVVVEEKMSALEG------A---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       212 ~~~Lee~LA~l~g------~---e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ..++++.++++++      .   ++++++++|++|+..++.+++++||+|+++.|.|.+....+    ...|.++..++.
T Consensus        63 ~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~  138 (410)
T 3e2y_A           63 HPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMV----RMAGAVPVFIPL  138 (410)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEEC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHH----HHcCCEEEEEec
Confidence            4567777777654      2   35566566669999999999999999999999999866443    345666666543


Q ss_pred             ----------------CCHHHHHHhhcCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCcc--
Q 012296          283 ----------------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ--  341 (466)
Q Consensus       283 ----------------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~---dl~~Ia~la~~~gillIvDea~a~~~~~--  341 (466)
                                      .|+++|+++++++ +++|++++|+||||.++   ++++|+++|+++|+++|+|++|......  
T Consensus       139 ~~~~~~g~~~~~~~~~~d~~~l~~~~~~~-~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~  217 (410)
T 3e2y_A          139 RSKPTDGMKWTSSDWTFDPRELESKFSSK-TKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGH  217 (410)
T ss_dssp             EECCCCSSCCBGGGEECCHHHHHTTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC
T ss_pred             cccccccccccccCCcCCHHHHHhhcCCC-ceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC
Confidence                            3899999999874 99999999999999996   6899999999999999999998743211  


Q ss_pred             ---cccc----cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH----------
Q 012296          342 ---KALS----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----------  404 (466)
Q Consensus       342 ---~~l~----~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~----------  404 (466)
                         ....    .+.++++.|+||.++.+| .+.|++++++++++.++..........++..+.++...++          
T Consensus       218 ~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  296 (410)
T 3e2y_A          218 THVKIATLPGMWERTITIGSAGKTFSVTG-WKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPE  296 (410)
T ss_dssp             CCCCGGGSTTCGGGEEEEEEHHHHSSCGG-GCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTT
T ss_pred             CCCCHHHcCCccCeEEEEecchhhcCCCC-ceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchH
Confidence               1111    234599999999998776 4679999999999988877665444555555554444443          


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHcC
Q 012296          405 -TLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       405 -tl~~R~~~~~~na~~La~~L~~~  427 (466)
                       .+..+.++..++++.+.+.|+++
T Consensus       297 ~~~~~~~~~~~~~~~~l~~~L~~~  320 (410)
T 3e2y_A          297 CYFNSLPKELEVKRDRMVRLLNSV  320 (410)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC
Confidence             35666777888999999999987

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.90  E-value=8.7e-22  Score=200.73  Aligned_cols=210  Identities=13%  Similarity=0.159  Sum_probs=156.8

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          212 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~----e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      ..++++.+++++    |.    ++.+++++|++|+.+++.+++++||+|+++.|+|.+....    ++..|.++..++. 
T Consensus        70 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~  145 (385)
T 1b5p_A           70 IPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEM----VRFAGGVVVEVETL  145 (385)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHH----HHHTTCEEEEEECC
T ss_pred             CHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHH----HHHcCCEEEEeecC
Confidence            456666666665    42    3555556666999999999999999999999999876543    3456777777653 


Q ss_pred             ------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----ccccc--C
Q 012296          283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALSL--G  347 (466)
Q Consensus       283 ------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~~l~~--g  347 (466)
                            .|+++|+++++++ +++|++++|+||||.+++   +++|+++|+++|++||+|++|+.....    ....+  +
T Consensus       146 ~~~~~~~d~~~l~~~l~~~-~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  224 (385)
T 1b5p_A          146 PEEGFVPDPERVRRAITPR-TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPE  224 (385)
T ss_dssp             GGGTTCCCHHHHHTTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTT
T ss_pred             cccCCCCCHHHHHHhcCCC-CEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCC
Confidence                  3789999999875 999999999999999976   889999999999999999998764321    11222  5


Q ss_pred             CcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHh-------hHHHHHHHHHHHHHHHHH
Q 012296          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG-------MKTLHLRVQQQNSTALRM  420 (466)
Q Consensus       348 aDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~-------L~tl~~R~~~~~~na~~L  420 (466)
                      .++++.|+||.++.+| .+.|+++++++++++++..+.....+.+....+++...       .+.++...+++.++++.+
T Consensus       225 ~~i~~~s~SK~~~~~G-~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  303 (385)
T 1b5p_A          225 HTLTVNGAAKAFAMTG-WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLL  303 (385)
T ss_dssp             TEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEechhhcCCcc-cceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Confidence            6899999999999877 45799999999999888766544334444433333222       334555666777888888


Q ss_pred             HHHHHcC
Q 012296          421 AKILEAH  427 (466)
Q Consensus       421 a~~L~~~  427 (466)
                      .+.|+++
T Consensus       304 ~~~L~~~  310 (385)
T 1b5p_A          304 LEGLTAL  310 (385)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHC
Confidence            8888865

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.90  E-value=2.7e-22  Score=201.47  Aligned_cols=218  Identities=17%  Similarity=0.168  Sum_probs=164.6

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCC--EEEEcCCCCcchHHHHHhhcccCCceEEEeCC----
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGG--HIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd--~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----  282 (466)
                      ++...+|+++|++++|.+..+++++|++|+.+++.+++.+||  .|+++.+.|...+... ......|+++..++.    
T Consensus        46 ~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~  124 (357)
T 3lws_A           46 GAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQD-GLKELHPIETILVGAADRL  124 (357)
T ss_dssp             ETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT-HHHHHSSCEEEECSCTTSC
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccc-hhhhccCcEEEEecCCCCC
Confidence            588999999999999998889999999999999999999988  6777666655432210 012234777777763    


Q ss_pred             CCHHHHHHhhcCCCceEEEEeCCCCCC-ccccc---HHHHHHHHHhcCCEEEEeCCCCC------CCcccccccCCcEEE
Q 012296          283 ADMEGLEAALNNNNVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT------PLNQKALSLGADLVL  352 (466)
Q Consensus       283 ~Dle~Le~ai~~~~tklV~lesP~NPt-G~v~d---l~~Ia~la~~~gillIvDea~a~------~~~~~~l~~gaDivv  352 (466)
                      .|+++|+++.  + +++|++++|+||+ |.+.+   +++|+++|++||++||+|++|..      +.....+..+.|+++
T Consensus       125 ~d~~~l~~~~--~-~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~  201 (357)
T 3lws_A          125 MTLDEIKALP--D-IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIY  201 (357)
T ss_dssp             CCHHHHHTCC--S-CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEE
T ss_pred             cCHHHHhcCc--C-cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEE
Confidence            3789998873  3 8999999999998 88875   88999999999999999999751      111122234578999


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCe
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKV  430 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~l--sp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V  430 (466)
                      .|+||+++++.   +|+++++++++++++..+..++..+  ....+..++..++....++++..++++.+.+.|+++|++
T Consensus       202 ~s~sK~~~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~  278 (357)
T 3lws_A          202 ISFYKGLGGIA---GAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGV  278 (357)
T ss_dssp             EESSSTTCCSS---CEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTE
T ss_pred             EeccccCCCCc---eEEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999997764   5999999999999987776665432  122233334556655566777788999999999999888


Q ss_pred             EEE
Q 012296          431 KRV  433 (466)
Q Consensus       431 ~~V  433 (466)
                      ...
T Consensus       279 ~~~  281 (357)
T 3lws_A          279 HTT  281 (357)
T ss_dssp             EEE
T ss_pred             eec
Confidence            643

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.90  E-value=5.9e-22  Score=200.61  Aligned_cols=216  Identities=16%  Similarity=0.158  Sum_probs=164.5

Q ss_pred             CCCc-hhHHHHHHHHHhhh----CCC-----cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCc
Q 012296          206 RYGN-PTTVVVEEKMSALE----GAE-----STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  275 (466)
Q Consensus       206 R~~n-p~~~~Lee~LA~l~----g~e-----~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi  275 (466)
                      +|+. +...++++.+++++    |.+     +.+++++|++|+.+++.+++++||+|+++.|.|++....+    ...|.
T Consensus        58 ~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~----~~~g~  133 (376)
T 2dou_A           58 GYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAA----RVASL  133 (376)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHH----HHTTC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHH----HHcCC
Confidence            3444 46788999999987    763     5666666679999999999999999999999999865443    34677


Q ss_pred             eEEEeCC-----CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc----ccc
Q 012296          276 TATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKA  343 (466)
Q Consensus       276 ~v~~vd~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~----~~~  343 (466)
                      ++..++.     .|+++|+++++++ +++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.....    ...
T Consensus       134 ~~~~~~~~~~~~~d~~~l~~~l~~~-~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~  212 (376)
T 2dou_A          134 RTFLIPLREDGLADLKAVPEGVWRE-AKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSP  212 (376)
T ss_dssp             EEEEECBCTTSSBCGGGSCHHHHHH-EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCG
T ss_pred             EEEEeeCCCCCCCCHHHHHHhhccC-ceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCh
Confidence            7777763     3788888888754 899999999999999986   67889999999999999999875321    112


Q ss_pred             cc----cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH----HHHHHHHHHHH
Q 012296          344 LS----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNS  415 (466)
Q Consensus       344 l~----~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~----tl~~R~~~~~~  415 (466)
                      ..    .+.++++.|+||+++.+| .+.|++++++++++.++......+.+.++..+..+...++    .+....++..+
T Consensus       213 ~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  291 (376)
T 2dou_A          213 LALPGAKERVVELFSLSKSYNLAG-FRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRE  291 (376)
T ss_dssp             GGSTTGGGTEEEEEEHHHHHTCGG-GCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             hhcCCCCCcEEEEecchhhcCChh-heeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            22    246799999999998766 3579999999999998877666554455555444444443    35556667788


Q ss_pred             HHHHHHHHHHcC
Q 012296          416 TALRMAKILEAH  427 (466)
Q Consensus       416 na~~La~~L~~~  427 (466)
                      +++.+.+.|+++
T Consensus       292 ~~~~l~~~L~~~  303 (376)
T 2dou_A          292 RALGMAEALKGV  303 (376)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHh
Confidence            899999999876

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.90  E-value=1.3e-22  Score=208.17  Aligned_cols=211  Identities=16%  Similarity=0.171  Sum_probs=173.3

Q ss_pred             chhHHHHHHHH-HhhhC-CCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC--
Q 012296          209 NPTTVVVEEKM-SALEG-AESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  283 (466)
Q Consensus       209 np~~~~Lee~L-A~l~g-~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~--  283 (466)
                      .|...+||+.+ |+++| .+++++++||++|+.+++.++ +++||+|+++.+.|.++...+    ...|+++++++..  
T Consensus        35 ~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~----~~~G~~~~~v~~~~~  110 (377)
T 3ju7_A           35 GPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAA----IWCGLEPYFIDISID  110 (377)
T ss_dssp             CHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHH----HHTTCEEEEECBCTT
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEEecCCc
Confidence            48899999999 99999 789999999999999999998 899999999999999876443    4568888888643  


Q ss_pred             ----CHHHHHHhhcCCC--ceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccccccc---CCcEEEEC
Q 012296          284 ----DMEGLEAALNNNN--VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSL---GADLVLHS  354 (466)
Q Consensus       284 ----Dle~Le~ai~~~~--tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~---gaDivv~S  354 (466)
                          |++++++++...+  |++|+   |+||+|.+.|+++|.++|+ +|++||+|++++.+........   ..|+.++|
T Consensus       111 ~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S  186 (377)
T 3ju7_A          111 DWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYS  186 (377)
T ss_dssp             TCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEE
T ss_pred             cCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEE
Confidence                7999999883224  88887   7889999999999999999 9999999999876543332223   26888888


Q ss_pred             C--ccccCccccceeEEEEe-CHHHHHHHHHHHHH------------hCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 012296          355 A--TKFIGGHNDVLAGSISG-SGKLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR  419 (466)
Q Consensus       355 ~--sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~------------~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~  419 (466)
                      +  +|++++ +  .||+++. ++++.++++.++..            ++..++++.+++++..+++++.+++++.++++.
T Consensus       187 ~~~~K~l~~-g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~~  263 (377)
T 3ju7_A          187 FHATKPFGI-G--EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISEW  263 (377)
T ss_dssp             CBTTSSSCC-B--SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CCCCCcCCC-C--CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5  699997 4  3677766 56788888776542            234578888988899999999999999999999


Q ss_pred             HHHHHHcCCCe
Q 012296          420 MAKILEAHPKV  430 (466)
Q Consensus       420 La~~L~~~p~V  430 (466)
                      +.+.|++++++
T Consensus       264 ~~~~L~~~~~~  274 (377)
T 3ju7_A          264 YKQLLQSNGLM  274 (377)
T ss_dssp             HHHHHHHTTTT
T ss_pred             HHHHhcCCCCc
Confidence            99999998753

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.90  E-value=1.8e-22  Score=205.25  Aligned_cols=217  Identities=16%  Similarity=0.204  Sum_probs=171.8

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      |+++..+...++++.+++++|.++.++++||++|+.+++.++ +++||+|+++.+.|+++...+    ...|.++.+++.
T Consensus        32 ~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~----~~~g~~~~~v~~  107 (388)
T 1b9h_A           32 WWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAA----QRLGAVTVPVDV  107 (388)
T ss_dssp             CBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECB
T ss_pred             eeecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHHHHHHH----HHcCCEEEEEec
Confidence            445567889999999999999988999999999999999999 899999999999999876443    456888887763


Q ss_pred             ------CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc---cccccCCcEEEE
Q 012296          283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---KALSLGADLVLH  353 (466)
Q Consensus       283 ------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~---~~l~~gaDivv~  353 (466)
                            .|+++|+++++++ +++|+   |+||+|.+.|+++|.++|+++|++||+|++++.+...   ....++ |+++.
T Consensus       108 ~~~~~~~d~~~l~~~i~~~-~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~  182 (388)
T 1b9h_A          108 DAATYNLDPEAVAAAVTPR-TKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELD-SIATF  182 (388)
T ss_dssp             CTTTCCBCHHHHHHHCCTT-EEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSS-SCEEE
T ss_pred             CCCcCCCCHHHHHHhcCcC-ceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeeccccc-ceEEE
Confidence                  2799999999874 88887   9999999999999999999999999999999865432   122333 67777


Q ss_pred             CCc--cccCccccceeEEEEeCHH-H--HHHHHHHHHH-------------hCC--CchHHHHHHHHHhhHHHHHHHHHH
Q 012296          354 SAT--KFIGGHNDVLAGSISGSGK-L--VTQIRNLHHV-------------LGG--ALNPNAAYLIIRGMKTLHLRVQQQ  413 (466)
Q Consensus       354 S~s--K~lgg~gdv~gG~ivg~~e-l--i~~l~~~~~~-------------~G~--~lsp~~a~l~l~~L~tl~~R~~~~  413 (466)
                      |++  |+++|+   .+|+++++++ +  +++++.....             .|.  .+++..+++++..++.+..+++++
T Consensus       183 S~s~~K~l~g~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~  259 (388)
T 1b9h_A          183 SFQNGKLMTAG---EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVR  259 (388)
T ss_dssp             ECCTTSSSCSS---SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHH
T ss_pred             EccCCCcccCC---CeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            766  777663   4799988875 5  5555443221             022  256677776677788888888889


Q ss_pred             HHHHHHHHHHHHcCCCeEE
Q 012296          414 NSTALRMAKILEAHPKVKR  432 (466)
Q Consensus       414 ~~na~~La~~L~~~p~V~~  432 (466)
                      .++++.+.+.|+++|++..
T Consensus       260 ~~~~~~l~~~L~~~~~~~~  278 (388)
T 1b9h_A          260 DERWTLLSRLLGAIDGVVP  278 (388)
T ss_dssp             HHHHHHHHHHHHTSTTCEE
T ss_pred             HHHHHHHHHHhccCCCccc
Confidence            9999999999999887753

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.90  E-value=1.1e-22  Score=206.96  Aligned_cols=224  Identities=15%  Similarity=0.139  Sum_probs=164.4

Q ss_pred             CccccCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc----cCCC-EEEEcCCCCcchHHHHHhhcccC
Q 012296          201 SFEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGG-HIVTTTDCYRKTRIFIETVLPKM  273 (466)
Q Consensus       201 ~~~Y~R~~np~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all----~~Gd-~Vlv~~~~y~~t~~~~~~~l~~~  273 (466)
                      .|.|+++..+..+++++++++++|.+  +++++++|++|+.+++.+++    ++|| +|+++++.|+++...+.. +...
T Consensus        54 ~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~-~~~~  132 (400)
T 3vax_A           54 RHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEH-LAGR  132 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHH-HHTT
T ss_pred             cchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHH-HHhc
Confidence            35566666778899999999999984  57777777899999999887    8999 999999999987666543 3567


Q ss_pred             CceEEEeCCC-----CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-cccccC
Q 012296          274 GITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-KALSLG  347 (466)
Q Consensus       274 Gi~v~~vd~~-----Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~-~~l~~g  347 (466)
                      |+++.+++..     |+++|+++++++ +++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+... ..... 
T Consensus       133 g~~~~~v~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-  210 (400)
T 3vax_A          133 GFEVDFLTPGPSGRISVEGVMERLRPD-TLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-  210 (400)
T ss_dssp             TCEEEEECCCTTCCCCHHHHHTTCCTT-EEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-
T ss_pred             CCeEEEEccCCCCCcCHHHHHHhcCCC-ceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-
Confidence            8898888754     899999999875 999999999999999999999999999999999999998765432 22234 


Q ss_pred             CcEEEECCccccCccccceeEEEE-eCH-HHH---HHHHHHH-------HHhCCCchHHHHHHHHHhhHH----HHHHHH
Q 012296          348 ADLVLHSATKFIGGHNDVLAGSIS-GSG-KLV---TQIRNLH-------HVLGGALNPNAAYLIIRGMKT----LHLRVQ  411 (466)
Q Consensus       348 aDivv~S~sK~lgg~gdv~gG~iv-g~~-eli---~~l~~~~-------~~~G~~lsp~~a~l~l~~L~t----l~~R~~  411 (466)
                      +|+++.|++|.+++.|   .|+++ .++ ++.   ..++...       ....++.+....+.+...++.    ++...+
T Consensus       211 ~d~~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~  287 (400)
T 3vax_A          211 IDMISISGHKIGAPKG---VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQV  287 (400)
T ss_dssp             CSEEEEETGGGTSCSS---CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred             CcEEEEeHHHhCCCCc---eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHH
Confidence            8999999999776554   45555 544 221   1111111       111233344333333333332    455566


Q ss_pred             HHHHHHHHHHHHHHcCCCeE
Q 012296          412 QQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       412 ~~~~na~~La~~L~~~p~V~  431 (466)
                      +..++++.+.+.|+ .+++.
T Consensus       288 ~~~~~~~~l~~~L~-~~~~~  306 (400)
T 3vax_A          288 AAQDLRSRLLAGLA-STSFQ  306 (400)
T ss_dssp             HHHHHHHHHHHHHT-TTTCE
T ss_pred             HHHHHHHHHHHhhC-CCCEE
Confidence            77788888999998 77764

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.90  E-value=5.8e-22  Score=202.29  Aligned_cols=211  Identities=15%  Similarity=0.173  Sum_probs=162.2

Q ss_pred             hHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          211 TTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       211 ~~~~Lee~LA~l~----g~----e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ...++++.+++++    |.    ++.+++++|++|+.+++.+++++||+|+++++.|++....+    ...|.++..++.
T Consensus        79 g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~  154 (389)
T 1o4s_A           79 GIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQI----ILAGGTVNVVET  154 (389)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHH----HHcCCEEEEEec
Confidence            4567788888776    53    45666666779999999999999999999999999866443    446777776653


Q ss_pred             -------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----cccc---
Q 012296          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALS---  345 (466)
Q Consensus       283 -------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~~l~---  345 (466)
                             .|+++|+++++++ +++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+.....    ....   
T Consensus       155 ~~~~~~~~d~~~l~~~l~~~-~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~  233 (389)
T 1o4s_A          155 FMSKNFQPSLEEVEGLLVGK-TKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSE  233 (389)
T ss_dssp             CGGGTTCCCHHHHHHTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCS
T ss_pred             CCccCCCCCHHHHHHhcccC-ceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCC
Confidence                   2789999999874 999999999999999987   899999999999999999998754321    1111   


Q ss_pred             -cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHH
Q 012296          346 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-LHLRVQQQNSTALRMAKI  423 (466)
Q Consensus       346 -~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~t-l~~R~~~~~~na~~La~~  423 (466)
                       .+.|+++.|++|+++.+| .+.|++++++++++.++..........++...+.+...++. +....++..++++.+.+.
T Consensus       234 ~~~~~i~~~s~sK~~~~~G-~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~l~~~  312 (389)
T 1o4s_A          234 GFDRIVYINGFSKSHSMTG-WRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVER  312 (389)
T ss_dssp             SSTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEeechhhcCCcc-cceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence             368999999999998666 45799999999999888766654444455555544444432 444566677888889999


Q ss_pred             HHcC
Q 012296          424 LEAH  427 (466)
Q Consensus       424 L~~~  427 (466)
                      |+++
T Consensus       313 L~~~  316 (389)
T 1o4s_A          313 LKKM  316 (389)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            9875

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.90  E-value=1.8e-21  Score=197.69  Aligned_cols=210  Identities=14%  Similarity=0.109  Sum_probs=159.1

Q ss_pred             HHHHHHHHHhh----hCC----C-cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          212 TVVVEEKMSAL----EGA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       212 ~~~Lee~LA~l----~g~----e-~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ..++++.++++    +|.    + +.+++++|++|+.+++.+++++||+|+++++.|++....    +...|.++..++.
T Consensus        69 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~~  144 (386)
T 1u08_A           69 VQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPA----IALSGGIVKRMAL  144 (386)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHH----HHHcCCEEEEeec
Confidence            45666777666    353    4 677777778999999999999999999999999986643    3456777776643


Q ss_pred             ------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc-------cccc--
Q 012296          283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-------QKAL--  344 (466)
Q Consensus       283 ------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~-------~~~l--  344 (466)
                            .|+++|+++++++ +++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.....       ...+  
T Consensus       145 ~~~~~~~d~~~l~~~l~~~-~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~  223 (386)
T 1u08_A          145 QPPHFRVDWQEFAALLSER-TRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQ  223 (386)
T ss_dssp             CTTTCCCCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHH
T ss_pred             CcccCcCCHHHHHHhhccc-CEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccC
Confidence                  4799999999764 999999999999999985   68899999999999999999875321       1111  


Q ss_pred             ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHHHHH
Q 012296          345 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRM  420 (466)
Q Consensus       345 ~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~----tl~~R~~~~~~na~~L  420 (466)
                      ..+.|+++.|+||+++++| .+.|+++++++++++++..........++..+.++...++    .+....++..++++.+
T Consensus       224 ~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l  302 (386)
T 1u08_A          224 LRERAVAVSSFGKTYHMTG-WKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDIL  302 (386)
T ss_dssp             HHTTEEEEEEHHHHTTCGG-GCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHH
T ss_pred             ccCcEEEEecchhhcCCcc-cceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            2468999999999999776 3579999999999988876654443444444333333333    3555566777888999


Q ss_pred             HHHHHcC
Q 012296          421 AKILEAH  427 (466)
Q Consensus       421 a~~L~~~  427 (466)
                      .+.|+++
T Consensus       303 ~~~L~~~  309 (386)
T 1u08_A          303 VNALNES  309 (386)
T ss_dssp             HHHTTSS
T ss_pred             HHHHHHC
Confidence            9999876

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.90  E-value=6.4e-22  Score=200.73  Aligned_cols=211  Identities=16%  Similarity=0.145  Sum_probs=164.4

Q ss_pred             hHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC------
Q 012296          211 TTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------  282 (466)
Q Consensus       211 ~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~------  282 (466)
                      ...+|++.++++++.  ++++++++|++|+.+++.+++++||+|+++++.|++....    ++..|.++..++.      
T Consensus        62 ~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~~~  137 (381)
T 1v2d_A           62 GLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPD----AFLAGAKARLVRLDLTPEG  137 (381)
T ss_dssp             CCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEECEEETTE
T ss_pred             CCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHH----HHHcCCEEEEEeCCCCCcc
Confidence            467899999999987  4677777888999999999999999999999999986543    3456777766653      


Q ss_pred             --CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc----cccc--ccCCcEE
Q 012296          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKAL--SLGADLV  351 (466)
Q Consensus       283 --~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~----~~~l--~~gaDiv  351 (466)
                        .|+++|+++++++ +++|++++|+||||.+.+   +++|.++|+++|+++|+|++|.....    ....  ..+.|++
T Consensus       138 ~~~d~~~l~~~l~~~-~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~  216 (381)
T 1v2d_A          138 FRLDLSALEKALTPR-TRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFT  216 (381)
T ss_dssp             EECCHHHHHTTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEE
T ss_pred             CCcCHHHHHHhcCcC-CEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEE
Confidence              3799999999874 999999999999999986   88999999999999999999875432    1112  3478999


Q ss_pred             EECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHH
Q 012296          352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK------TLHLRVQQQNSTALRMAKILE  425 (466)
Q Consensus       352 v~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~------tl~~R~~~~~~na~~La~~L~  425 (466)
                      +.|+||+++.+| .+.|++++++++++.++........+.++...+.+...++      .++...++..++++.+.+.|+
T Consensus       217 ~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~  295 (381)
T 1v2d_A          217 VGSAGKRLEATG-YRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLR  295 (381)
T ss_dssp             EEEHHHHTTCGG-GCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeechhhcCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998776 4579999999999888776654444444444333333333      345566777888999999998


Q ss_pred             cC
Q 012296          426 AH  427 (466)
Q Consensus       426 ~~  427 (466)
                      +.
T Consensus       296 ~~  297 (381)
T 1v2d_A          296 AM  297 (381)
T ss_dssp             HT
T ss_pred             HC
Confidence            74

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.89  E-value=2.9e-22  Score=202.22  Aligned_cols=214  Identities=16%  Similarity=0.194  Sum_probs=173.2

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC---
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  283 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---  283 (466)
                      .++...++++.++++++.++++++++|++|+.+++.++ +++||+|+++.+.|+++...    +...|+++.+++..   
T Consensus        36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~  111 (374)
T 3uwc_A           36 LGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASVGA----IVQAGATPVLVDSENGY  111 (374)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHH----HHHTTCEEEEECBCTTS
T ss_pred             cChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHH----HHHcCCEEEEEecCCCC
Confidence            57889999999999999999999999999999999999 99999999999999986643    44568888888754   


Q ss_pred             --CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccC--CcEEEECCc--c
Q 012296          284 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT--K  357 (466)
Q Consensus       284 --Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~g--aDivv~S~s--K  357 (466)
                        |+++++++++++ +++|+   |+||+|.+.|+++|.++|+++|+++|+|++++.+........+  .|+++.|+|  |
T Consensus       112 ~~d~~~l~~~~~~~-~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~K  187 (374)
T 3uwc_A          112 VIDPEKIEAAITDK-TKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPLK  187 (374)
T ss_dssp             SBCGGGTGGGCCTT-EEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECSSSS
T ss_pred             CcCHHHHHHhCCCC-ceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeCCCCC
Confidence              899999999874 88888   8999999999999999999999999999998865433322333  799999977  9


Q ss_pred             ccCccccceeEEEEeC-HHHHHHHHHHHHH------------hCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 012296          358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKIL  424 (466)
Q Consensus       358 ~lgg~gdv~gG~ivg~-~eli~~l~~~~~~------------~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L  424 (466)
                      +++++|  .+|+++++ +++.++++..+..            ....+.++.+.+.+..++.++.+.++..++++.+.+.|
T Consensus       188 ~l~~~g--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l  265 (374)
T 3uwc_A          188 NLNVWS--DAGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSF  265 (374)
T ss_dssp             SSCCSS--CCEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCccc--eeEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999866  37887765 5677777665421            11224566666666667777778888889999999999


Q ss_pred             HcCCC-eE
Q 012296          425 EAHPK-VK  431 (466)
Q Consensus       425 ~~~p~-V~  431 (466)
                      ++.++ +.
T Consensus       266 ~~~~~~~~  273 (374)
T 3uwc_A          266 VDLSEFID  273 (374)
T ss_dssp             GGGTTTEE
T ss_pred             ccCCCeEE
Confidence            98876 54

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.89  E-value=1.7e-22  Score=203.72  Aligned_cols=218  Identities=15%  Similarity=0.139  Sum_probs=159.5

Q ss_pred             CchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc----cCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          208 GNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all----~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ..+..+++++.+++++|.+  +++++++|++|+.+++.++.    ++||+|+++++.|+++...+. .+...|+++.+++
T Consensus        41 ~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~  119 (382)
T 4eb5_A           41 AREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQGFEVEYIP  119 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHTTTTCEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHH-HHHhCCcEEEEec
Confidence            3567889999999999985  55666677899999999987    899999999999998765553 3445788888887


Q ss_pred             C-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECC
Q 012296          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSA  355 (466)
Q Consensus       282 ~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~  355 (466)
                      .     .|+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|++ |+|++++.+.. .....+++|+++.|+
T Consensus       120 ~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~  197 (382)
T 4eb5_A          120 VGKYGEVDVSFIDQKLRDD-TILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISS  197 (382)
T ss_dssp             BCTTSCBCHHHHHHHCCTT-EEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEET
T ss_pred             cCCCCccCHHHHHHHhcCC-CeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEeeh
Confidence            4     4799999999874 99999999999999999999999999999999 99999874322 122234789999999


Q ss_pred             ccccCccccceeEEEEeCHHH-HHHHHH----HHHHhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHc
Q 012296          356 TKFIGGHNDVLAGSISGSGKL-VTQIRN----LHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       356 sK~lgg~gdv~gG~ivg~~el-i~~l~~----~~~~~G~~lsp~~a~l~l~~L~----tl~~R~~~~~~na~~La~~L~~  426 (466)
                      ||+++..|   .|+++++++. +..+..    ......++.+......+...++    .++.++++..++++.+.+.|++
T Consensus       198 sK~~g~~g---~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~  274 (382)
T 4eb5_A          198 NDIYGPKG---VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK  274 (382)
T ss_dssp             GGGTCCSS---CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhcCCCc---eEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence            99977554   3666665542 111100    0111122333332222222222    3455677788899999999998


Q ss_pred             CCCeE
Q 012296          427 HPKVK  431 (466)
Q Consensus       427 ~p~V~  431 (466)
                      +|++.
T Consensus       275 ~~~~~  279 (382)
T 4eb5_A          275 IEESY  279 (382)
T ss_dssp             STTEE
T ss_pred             CCCeE
Confidence            88764

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.89  E-value=2.7e-22  Score=203.23  Aligned_cols=211  Identities=14%  Similarity=0.181  Sum_probs=171.1

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC---
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  283 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---  283 (466)
                      ..+..+++|+.+++++|.+++++++||++|+.+++.++ +++||+|+++.+.|.++...+    ...|.++.+++..   
T Consensus        34 ~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~  109 (373)
T 3frk_A           34 LGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAV----SYTGAKPIFVEPDIRT  109 (373)
T ss_dssp             SSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHH----HHHSCEEEEECEETTT
T ss_pred             CCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEEeccccc
Confidence            56889999999999999999999999999999999999 899999999999999876443    4458888877643   


Q ss_pred             ---CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccC--CcEEEECCc--
Q 012296          284 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT--  356 (466)
Q Consensus       284 ---Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~g--aDivv~S~s--  356 (466)
                         |+++|+++++++ +++|+   |+||+|.+.|+++|.++|+++|+++|+|++++.+........+  .|+++.|++  
T Consensus       110 ~~~d~~~l~~~l~~~-~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~  185 (373)
T 3frk_A          110 YNIDPSLIESAITEK-TKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFSFYPA  185 (373)
T ss_dssp             TEECGGGTGGGCCTT-EEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred             cCcCHHHHHHhcCCC-CeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccccccEEEEeCcCC
Confidence               899999999874 89888   6789999999999999999999999999998865544333444  799999966  


Q ss_pred             cccCccccceeEEEEeC-HHHHHHHHHHHHHh------------CCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012296          357 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKI  423 (466)
Q Consensus       357 K~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~------------G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~  423 (466)
                      |++++++  .+|+++++ +++.++++..+...            ...+.++.+.+.+..++.++...++..++++.+.+.
T Consensus       186 K~l~~~g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (373)
T 3frk_A          186 KNLGSLG--DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAG  263 (373)
T ss_dssp             SSSCCSS--SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CccCccc--eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998855  37888876 56777776654311            123466766666666777777788888899999999


Q ss_pred             HHcCC
Q 012296          424 LEAHP  428 (466)
Q Consensus       424 L~~~p  428 (466)
                      |++.+
T Consensus       264 l~~~~  268 (373)
T 3frk_A          264 INNPN  268 (373)
T ss_dssp             CCCTT
T ss_pred             hccCc
Confidence            98876

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.89  E-value=8.1e-22  Score=200.72  Aligned_cols=222  Identities=16%  Similarity=0.129  Sum_probs=165.7

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccC----------CCEEEEcCCCCcchHHHHHhhcc
Q 012296          202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPA----------GGHIVTTTDCYRKTRIFIETVLP  271 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~----------Gd~Vlv~~~~y~~t~~~~~~~l~  271 (466)
                      +.+..+.++..++++++|++++|.++++++++|++|+.+++..+..+          +|+|++..+.|++..........
T Consensus        70 ~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~  149 (392)
T 3ruy_A           70 LTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSS  149 (392)
T ss_dssp             CCCTTSEETTHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCS
T ss_pred             ccccccCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccC
Confidence            44445678999999999999999888999999999999999877654          68999999999875433322111


Q ss_pred             c---------CCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC
Q 012296          272 K---------MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP  338 (466)
Q Consensus       272 ~---------~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~  338 (466)
                      .         ....+..++..|+++|+++++++ +++|++++|+||+|.+.+    +++|.++|++||+++|+|+++...
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~-~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~  228 (392)
T 3ruy_A          150 NEEYKRGFGPMLPGIIVIPYGDLEALKAAITPN-TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGL  228 (392)
T ss_dssp             CTTTTTTCCSCCSSEEEECTTCHHHHHHHCCTT-EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT
T ss_pred             ChhhccccCCCCCCCeeeCcccHHHHHHHhccC-eEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCC
Confidence            1         11235556667999999999864 999999999999999998    999999999999999999998632


Q ss_pred             C------cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHH--HHHH
Q 012296          339 L------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL--HLRV  410 (466)
Q Consensus       339 ~------~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl--~~R~  410 (466)
                      .      .........|+++  ++|.++| |...+|++++++++++.++..........++..+..+...++.+  +...
T Consensus       229 ~~~g~~~~~~~~~~~~d~~~--~SK~l~g-G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  305 (392)
T 3ruy_A          229 GRTGKVFACDWDNVTPDMYI--LGKALGG-GVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLT  305 (392)
T ss_dssp             TTTSSSSGGGGGTCCCSEEE--ECGGGGT-TTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred             CccccchhhhccCCCCCEEE--EchhhhC-ChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHH
Confidence            1      1122233467775  5699887 32357999999988877665443334455666666666666554  3456


Q ss_pred             HHHHHHHHHHHHHHHcC
Q 012296          411 QQQNSTALRMAKILEAH  427 (466)
Q Consensus       411 ~~~~~na~~La~~L~~~  427 (466)
                      ++..++++.+.+.|++.
T Consensus       306 ~~~~~~~~~l~~~L~~~  322 (392)
T 3ruy_A          306 ERSLQLGEKLVGQLKEI  322 (392)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            67778889999999876

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.89  E-value=2.8e-21  Score=196.98  Aligned_cols=215  Identities=13%  Similarity=0.105  Sum_probs=161.6

Q ss_pred             HHHHHHHHHhh----hC--C--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          212 TVVVEEKMSAL----EG--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       212 ~~~Lee~LA~l----~g--~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      ..++++.++++    +|  .  ++.+++++|++|+.+++.+++++||+|++..|.|++....+    ...|.++..++. 
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~  143 (399)
T 1c7n_A           68 TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAI----KNQERKIIECELL  143 (399)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHH----HTTTCEEEECCCE
T ss_pred             cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHH----HHcCCEEEecccc
Confidence            55677777776    35  2  46677777789999999999999999999999999866443    345777766653 


Q ss_pred             -------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc-----ccccc--
Q 012296          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALS--  345 (466)
Q Consensus       283 -------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~-----~~~l~--  345 (466)
                             .|+++|++++++.++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.....     .....  
T Consensus       144 ~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~  223 (399)
T 1c7n_A          144 EKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSID  223 (399)
T ss_dssp             EETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred             cCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcC
Confidence                   57999999998435999999999999999998   89999999999999999999875321     11111  


Q ss_pred             ---cCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhCC-CchHHHHHHHHHhh----HHHHHHHHHHHHH
Q 012296          346 ---LGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG-ALNPNAAYLIIRGM----KTLHLRVQQQNST  416 (466)
Q Consensus       346 ---~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G~-~lsp~~a~l~l~~L----~tl~~R~~~~~~n  416 (466)
                         .+.++++.|+||+++.+| .+.|+++++ ++++++++.....++. +.++..++++...+    +.++...++..++
T Consensus       224 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  302 (399)
T 1c7n_A          224 EQLADKTITFTAPSKTFNIAG-MGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKN  302 (399)
T ss_dssp             HHHHTTEEEEECSHHHHTCGG-GCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ccccCcEEEEEeChhhccccc-hheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence               246799999999998766 357888886 6798888877665532 34555444443333    3455566677888


Q ss_pred             HHHHHHHHHc-CCCeE
Q 012296          417 ALRMAKILEA-HPKVK  431 (466)
Q Consensus       417 a~~La~~L~~-~p~V~  431 (466)
                      ++.+.+.|++ +|++.
T Consensus       303 ~~~l~~~L~~~~~~~~  318 (399)
T 1c7n_A          303 QRIVKDFFEVNHPEIK  318 (399)
T ss_dssp             HHHHHHHHHHHCTTSB
T ss_pred             HHHHHHHHHhhCCCCe
Confidence            9999999988 66653

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.89  E-value=3.1e-22  Score=201.62  Aligned_cols=218  Identities=17%  Similarity=0.122  Sum_probs=162.0

Q ss_pred             CchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc----cCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          208 GNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all----~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ..+...++++.+++++|.+  +.+++++|++|+.+++.++.    ++||+|+++.+.|++....+. .+...|.++..++
T Consensus        42 ~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~  120 (384)
T 1eg5_A           42 ANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMK-YLSMKGFKVKYVP  120 (384)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHH-HHHHTTCEEEECC
T ss_pred             HHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHH-HHHhcCCEEEEEc
Confidence            3456788999999999974  67777788899999999987    799999999999998665542 2355688888876


Q ss_pred             C-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcC--CEEEEeCCCCCCCc-ccccccCCcEEEE
Q 012296          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG--AIVCIDGTFATPLN-QKALSLGADLVLH  353 (466)
Q Consensus       282 ~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~g--illIvDea~a~~~~-~~~l~~gaDivv~  353 (466)
                      .     .|+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|  +++|+|++++.+.. .....+++|+++.
T Consensus       121 ~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~  199 (384)
T 1eg5_A          121 VDSRGVVKLEELEKLVDED-TFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASF  199 (384)
T ss_dssp             BCTTSCBCHHHHHHHCCTT-EEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEE
T ss_pred             cCCCCccCHHHHHHHhCCC-CeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEe
Confidence            4     4799999999874 999999999999999999999999999999  99999999763221 1222347899999


Q ss_pred             CCccccCccccceeEEEEeCHHH--HHHHHHH---HHHhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHH
Q 012296          354 SATKFIGGHNDVLAGSISGSGKL--VTQIRNL---HHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAKIL  424 (466)
Q Consensus       354 S~sK~lgg~gdv~gG~ivg~~el--i~~l~~~---~~~~G~~lsp~~a~l~l~~L~----tl~~R~~~~~~na~~La~~L  424 (466)
                      |+||+++.+|   .|++++++++  ...+...   .....+..+......+...++    .+....++..++++.+.+.|
T Consensus       200 s~sK~~g~~G---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L  276 (384)
T 1eg5_A          200 SAHKFHGPKG---VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGL  276 (384)
T ss_dssp             EGGGGTSCTT---CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHhcCCCc---eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence            9999988765   4888888875  2221110   001122334443333333333    34556677788899999999


Q ss_pred             HcCCCeE
Q 012296          425 EAHPKVK  431 (466)
Q Consensus       425 ~~~p~V~  431 (466)
                      ++ +++.
T Consensus       277 ~~-~g~~  282 (384)
T 1eg5_A          277 MN-LGAH  282 (384)
T ss_dssp             HT-TTCE
T ss_pred             CC-CCeE
Confidence            87 5553

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.89  E-value=7.8e-22  Score=197.98  Aligned_cols=220  Identities=18%  Similarity=0.177  Sum_probs=163.0

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCE--EEEcCCCCcchHHHHHhhcccCCceEEEeCCC--
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGH--IVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  283 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~--Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~--  283 (466)
                      .++..++|++++++++|.+..+++++|++|+.+++.+++.+||+  |+++.+.|...+... ......|.++..++..  
T Consensus        46 ~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~  124 (359)
T 3pj0_A           46 NGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQD-GLKELQQITPLLLGTANQ  124 (359)
T ss_dssp             BSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT-HHHHHHCCEEEECSCTTS
T ss_pred             CCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcc-hHHHhcCceEEecCCcCC
Confidence            46889999999999999988899999999999999999988887  555555543321110 0112347788777643  


Q ss_pred             --CHHHHHHhhcCCCceEEEEeCCCCCC-cccccHHH---HHHHHHhcCCEEEEeCCCCCCC------cccccccCCcEE
Q 012296          284 --DMEGLEAALNNNNVSLFFTESPTNPF-LRCVDVKL---VSDLCHKKGAIVCIDGTFATPL------NQKALSLGADLV  351 (466)
Q Consensus       284 --Dle~Le~ai~~~~tklV~lesP~NPt-G~v~dl~~---Ia~la~~~gillIvDea~a~~~------~~~~l~~gaDiv  351 (466)
                        |+++|+++ .+ ++++|++++|+||+ |.+.++++   |.++|++||++||+|+++....      ....+..+.|++
T Consensus       125 ~~d~~~l~~~-~~-~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~  202 (359)
T 3pj0_A          125 LLTIDDIKSL-RE-PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSV  202 (359)
T ss_dssp             CCCHHHHHTC-SS-CCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEE
T ss_pred             CcCHHHHHhc-cC-CceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEE
Confidence              79999988 55 49999999999998 78887554   5999999999999999865321      112233468999


Q ss_pred             EECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012296          352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK  429 (466)
Q Consensus       352 v~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~l--sp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~  429 (466)
                      +.|+||+++++.   +|+++++++++++++..+..++...  ....+..+...++....++++..++++.+.+.|+++|+
T Consensus       203 ~~s~sK~~~~~~---gg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g  279 (359)
T 3pj0_A          203 YVSFYKGIGGIA---GAILAGNDDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKRIGKMAEYFEAAKGLAERFNSCSG  279 (359)
T ss_dssp             EEESSSTTCCSS---CEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHTSTT
T ss_pred             EEeccccCCCcc---eEEEECCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCC
Confidence            999999998874   5899999999999988766655432  12222222344555556777888999999999999988


Q ss_pred             eEEE
Q 012296          430 VKRV  433 (466)
Q Consensus       430 V~~V  433 (466)
                      +...
T Consensus       280 ~~~~  283 (359)
T 3pj0_A          280 VKTV  283 (359)
T ss_dssp             EEEE
T ss_pred             ceee
Confidence            8643

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.89  E-value=7.8e-22  Score=202.24  Aligned_cols=213  Identities=18%  Similarity=0.259  Sum_probs=173.1

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-----
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----  282 (466)
                      .+...++++.+++++|.++.+++++|++|+..++.++ +++||+|+++.+.|+++...    +...|+++.+++.     
T Consensus        62 ~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~  137 (399)
T 2oga_A           62 GPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLA----VSATGATPVPVEPHEDHP  137 (399)
T ss_dssp             SHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEECBCSSSS
T ss_pred             chhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHH----HHHCCCEEEEEecCCCCC
Confidence            4778999999999999988999999999999999999 89999999999999986543    3456888877753     


Q ss_pred             -CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccC--CcEEEECC--cc
Q 012296          283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSA--TK  357 (466)
Q Consensus       283 -~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~g--aDivv~S~--sK  357 (466)
                       .|+++|+++++++ +++|+   |+||+|.+.|+++|.++|+++|+++|+|++++.+...+...++  .|+++.|+  +|
T Consensus       138 ~~d~~~l~~~i~~~-~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~sK  213 (399)
T 2oga_A          138 TLDPLLVEKAITPR-TRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGK  213 (399)
T ss_dssp             SBCHHHHHHHCCTT-EEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTTS
T ss_pred             CcCHHHHHHhcCCC-CeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeCCCCc
Confidence             3799999999874 88887   5789999999999999999999999999999865332222233  69999999  69


Q ss_pred             ccCccccceeEEEEeC-HHHHHHHHHHHHHh----------C--CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 012296          358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHVL----------G--GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKIL  424 (466)
Q Consensus       358 ~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~----------G--~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L  424 (466)
                      +++++|  .+|+++.+ ++++++++......          |  ..+++..++++...++.++...++..++++.+.+.|
T Consensus       214 ~~~~~G--~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L  291 (399)
T 2oga_A          214 NLGCFG--DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGL  291 (399)
T ss_dssp             SSCCSS--CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCcCC--ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999876  47888875 88888887654321          1  245677777777788888777888888899999999


Q ss_pred             HcCCCeE
Q 012296          425 EAHPKVK  431 (466)
Q Consensus       425 ~~~p~V~  431 (466)
                      +++|++.
T Consensus       292 ~~~~g~~  298 (399)
T 2oga_A          292 AGLPGIG  298 (399)
T ss_dssp             TTCTTCB
T ss_pred             ccCCCcc
Confidence            9887654

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.89  E-value=2e-21  Score=197.31  Aligned_cols=210  Identities=12%  Similarity=0.159  Sum_probs=160.6

Q ss_pred             HHHHHHHHHhhh----CC----Cc-EEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          212 TVVVEEKMSALE----GA----ES-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~----e~-~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ..++++.+++++    |.    ++ .+++++|++|+.+++.+++++||+|++++++|++....+    ...|.++..++.
T Consensus        65 ~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~v~~  140 (389)
T 1gd9_A           65 LLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAV----ILAGGKPVEVPT  140 (389)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHH----HHHTCEEEEEEC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHH----HHCCCEEEEecc
Confidence            456777777766    62    46 777777889999999999999999999999999866443    345777766642


Q ss_pred             -------CCHHHHHHhhcCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCcc-----cccc--
Q 012296          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS--  345 (466)
Q Consensus       283 -------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~---dl~~Ia~la~~~gillIvDea~a~~~~~-----~~l~--  345 (466)
                             .|+++|+++++++ +++|++++|+||||.+.   ++++|+++|+++|+++|+|++|+.....     ....  
T Consensus       141 ~~~~~~~~d~~~l~~~l~~~-~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~  219 (389)
T 1gd9_A          141 YEEDEFRLNVDELKKYVTDK-TRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLD  219 (389)
T ss_dssp             CGGGTTCCCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGST
T ss_pred             CCccCCCCCHHHHHHhcCcC-ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhcc
Confidence                   2789999999874 99999999999999998   4899999999999999999998764321     1122  


Q ss_pred             --cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH------HHHHHHHHHHHHH
Q 012296          346 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK------TLHLRVQQQNSTA  417 (466)
Q Consensus       346 --~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~------tl~~R~~~~~~na  417 (466)
                        .+.|+++.|+||+++.+| .+.|+++++++++++++........+.++...+++...++      .++.+.++..+++
T Consensus       220 ~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  298 (389)
T 1gd9_A          220 GMFERTITVNGFSKTFAMTG-WRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRR  298 (389)
T ss_dssp             TCGGGEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEecChhhcCCcc-cceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence              356899999999998776 3579999999999988876654444445554444433333      3455566778888


Q ss_pred             HHHHHHHHcC
Q 012296          418 LRMAKILEAH  427 (466)
Q Consensus       418 ~~La~~L~~~  427 (466)
                      +.+.+.|+++
T Consensus       299 ~~l~~~L~~~  308 (389)
T 1gd9_A          299 KLVWKRLNEM  308 (389)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999999876

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.89  E-value=1.2e-21  Score=197.63  Aligned_cols=213  Identities=13%  Similarity=0.125  Sum_probs=159.9

Q ss_pred             HHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC-
Q 012296          213 VVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-  283 (466)
Q Consensus       213 ~~Lee~LA~l~g--------~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-  283 (466)
                      .++++.++++++        .++.+++++|++|+..++.+++++||+|+++.+.|.+....    +...|.++..++.. 
T Consensus        61 ~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~  136 (377)
T 3fdb_A           61 SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHL----LSATQREGIFIDATG  136 (377)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHH----HHHHTCCEEEEECTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHH----HHHcCCEEEEccCCC
Confidence            455566665544        25677778888999999999999999999999999986643    34457777777654 


Q ss_pred             --CHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc-----cc----ccCCc
Q 012296          284 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-----AL----SLGAD  349 (466)
Q Consensus       284 --Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~-----~l----~~gaD  349 (466)
                        |+++|+++++++ +++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.......     ++    ..+.+
T Consensus       137 ~~d~~~l~~~l~~~-~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~  215 (377)
T 3fdb_A          137 GINLHDVEKGFQAG-ARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVC  215 (377)
T ss_dssp             SCCHHHHHHHHHTT-CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHE
T ss_pred             CCCHHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcE
Confidence              899999999885 899999999999999985   6778888999999999999987532211     11    12345


Q ss_pred             EEEECCccccCccccceeEEEE-eCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHH
Q 012296          350 LVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAKIL  424 (466)
Q Consensus       350 ivv~S~sK~lgg~gdv~gG~iv-g~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~----tl~~R~~~~~~na~~La~~L  424 (466)
                      +++.|+||.+|.+|. +.|+++ +++++++.++........+.++..++++...++    .+..+.++..++++.+.+.|
T Consensus       216 i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  294 (377)
T 3fdb_A          216 ITITAPSKAWNIAGL-KCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEI  294 (377)
T ss_dssp             EEEECSTTTTTCGGG-CCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeChHhccCcch-hheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999987764 467655 478898888876655444555555544444433    35666778888999999999


Q ss_pred             Hc-CCCeE
Q 012296          425 EA-HPKVK  431 (466)
Q Consensus       425 ~~-~p~V~  431 (466)
                      ++ +|++.
T Consensus       295 ~~~~~~~~  302 (377)
T 3fdb_A          295 PKRIPGAK  302 (377)
T ss_dssp             HHHSTTCE
T ss_pred             HhhCCCce
Confidence            88 66654

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.89  E-value=8.3e-22  Score=197.66  Aligned_cols=218  Identities=15%  Similarity=0.156  Sum_probs=164.9

Q ss_pred             cCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          205 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      .+|+++...++++.++++++.  ++.+++++|++|+.+++..+    |+|+++.+.|.+....    +...|.++..++.
T Consensus        56 ~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~----d~vi~~~~~~~~~~~~----~~~~g~~~~~~~~  127 (361)
T 3ftb_A           56 GVYPDVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF----EKILIIVPSYAEYEIN----AKKHGVSVVFSYL  127 (361)
T ss_dssp             GSCCCTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC----SEEEEEESCCTHHHHH----HHHTTCEEEEEEC
T ss_pred             cCCCCccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc----CcEEEecCChHHHHHH----HHHcCCeEEEeec
Confidence            444667788999999999986  45566667779999988776    9999999999986543    3446888777753


Q ss_pred             -----CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc---cccc----ccC
Q 012296          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN---QKAL----SLG  347 (466)
Q Consensus       283 -----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~---~~~l----~~g  347 (466)
                           .+++++++++++  +++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+....   ....    ..+
T Consensus       128 ~~~~~~~~~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  205 (361)
T 3ftb_A          128 DENMCIDYEDIISKIDD--VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYS  205 (361)
T ss_dssp             CTTSCCCHHHHHHHTTT--CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCS
T ss_pred             CcccCCCHHHHHHhccC--CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCC
Confidence                 367899999976  899999999999999986   66788888899999999999864322   1111    224


Q ss_pred             CcEEEECCccccCccccceeEEEE-eCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHH
Q 012296          348 ADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKI  423 (466)
Q Consensus       348 aDivv~S~sK~lgg~gdv~gG~iv-g~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~  423 (466)
                      .++++.|+||.++.+|. ..|+++ +++++++.++.....+  +.++..++.+...+   +.+..+.++..++++.+.+.
T Consensus       206 ~~i~~~s~sK~~~~~G~-r~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~  282 (361)
T 3ftb_A          206 CLFIIRAMTKFFAMPGI-RFGYGITNNKEIAAKIKAKQNPW--NINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEE  282 (361)
T ss_dssp             SEEEEEESSSTTSCGGG-CCEEEEESCHHHHHHHHTTSCTT--CSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeeChhhcCCCCc-ceeEEEeCCHHHHHHHHhhCCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            45889999999987763 467777 8999999887655433  34555555444443   45666777888999999999


Q ss_pred             HHcCCCeEEEeC
Q 012296          424 LEAHPKVKRVHY  435 (466)
Q Consensus       424 L~~~p~V~~V~y  435 (466)
                      |+++|++.++..
T Consensus       283 l~~~~~~~~~~~  294 (361)
T 3ftb_A          283 LNKIGFIKRVFS  294 (361)
T ss_dssp             HHHSSSEEEEEC
T ss_pred             HHhCCCCceecC
Confidence            999998863443

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.89  E-value=9.3e-22  Score=202.22  Aligned_cols=211  Identities=9%  Similarity=0.078  Sum_probs=160.7

Q ss_pred             hHHHHHHHHHhhh----CC-----CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          211 TTVVVEEKMSALE----GA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       211 ~~~~Lee~LA~l~----g~-----e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ...++++.+++++    |.     ++.+++++|++|+.+++.+++++||+|+++.|.|.+....+    ...|.++..++
T Consensus        86 g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~v~  161 (404)
T 2o1b_A           86 GKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGV----LLADGKPVPLN  161 (404)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHH----HHTTCEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHH----HHCCCEEEEec
Confidence            4567888888876    75     24555566679999999999999999999999999976443    34577766664


Q ss_pred             C------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc----cccccc--
Q 012296          282 P------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALSL--  346 (466)
Q Consensus       282 ~------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~----~~~l~~--  346 (466)
                      .      .|+++|+++++++ +++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.....    .....+  
T Consensus       162 ~~~~~~~~d~~~l~~~l~~~-~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~  240 (404)
T 2o1b_A          162 LEPPHYLPDWSKVDSQIIDK-TKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASEN  240 (404)
T ss_dssp             CCTTTCCCCGGGSCHHHHHH-EEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTT
T ss_pred             cCcccCcCCHHHHHHhhccC-ceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCC
Confidence            2      3688888888754 899999999999999985   78899999999999999999876432    112222  


Q ss_pred             --CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH----HHHHHHHHHHHHHHH
Q 012296          347 --GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRM  420 (466)
Q Consensus       347 --gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~t----l~~R~~~~~~na~~L  420 (466)
                        +.++++.|+||+++.+| .+.|+++++++++++++........+.++...+.+...++.    +....++..++++.+
T Consensus       241 ~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l  319 (404)
T 2o1b_A          241 GKDVAIEIYSLSKGYNMSG-FRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRF  319 (404)
T ss_dssp             HHHHEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEecchhccCch-hheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence              45799999999998766 45799999999999988776665555566555554444433    555566677888999


Q ss_pred             HHHHHcC
Q 012296          421 AKILEAH  427 (466)
Q Consensus       421 a~~L~~~  427 (466)
                      .+.|+++
T Consensus       320 ~~~L~~~  326 (404)
T 2o1b_A          320 EAMLAKA  326 (404)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9999876

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.89  E-value=1.9e-21  Score=199.71  Aligned_cols=212  Identities=15%  Similarity=0.206  Sum_probs=159.2

Q ss_pred             HHHHHHHHhhh----CC-----CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          213 VVVEEKMSALE----GA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       213 ~~Lee~LA~l~----g~-----e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      ..+++.+++++    |.     ++++++++|++|+.+++..++++||+|++..|.|.+....+    ...|.++..++. 
T Consensus        70 ~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~  145 (422)
T 3fvs_A           70 PPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMT----MMAGGRPVFVSLK  145 (422)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECB
T ss_pred             HHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHH----HHcCCEEEEEecc
Confidence            45555555554    32     24566666669999999999999999999999999866433    345777666542 


Q ss_pred             ----------------CCHHHHHHhhcCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCc---
Q 012296          283 ----------------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN---  340 (466)
Q Consensus       283 ----------------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~---dl~~Ia~la~~~gillIvDea~a~~~~---  340 (466)
                                      .|+++|+++++++ +++|++++|+||||.+.   ++++|+++|+++|+++|+|++|+....   
T Consensus       146 ~~~~~~G~~~~~~~~~~d~~~l~~~~~~~-~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~  224 (422)
T 3fvs_A          146 PGPIQNGELGSSSNWQLDPMELAGKFTSR-TKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH  224 (422)
T ss_dssp             CCCCCSSSCCBGGGSBCCHHHHHTTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC
T ss_pred             cccccccccccccCCCCCHHHHHhhcCCC-ceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC
Confidence                            4899999999874 99999999999999999   689999999999999999999875321   


Q ss_pred             --ccccc----cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH----------
Q 012296          341 --QKALS----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----------  404 (466)
Q Consensus       341 --~~~l~----~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~----------  404 (466)
                        .....    .+.++++.|+||.++.+| .+.|++++++++++.+...........++...+++...++          
T Consensus       225 ~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  303 (422)
T 3fvs_A          225 QHISIASLPGMWERTLTIGSAGKTFSATG-WKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPS  303 (422)
T ss_dssp             CCCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTT
T ss_pred             CCCChhhcccccCcEEEEecchhccCCcc-ceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchH
Confidence              11111    245699999999998776 4579999999999988876654444455555544444443          


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 012296          405 -TLHLRVQQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       405 -tl~~R~~~~~~na~~La~~L~~~p~V~  431 (466)
                       .+..+.++..++++.+.+.|+++ ++.
T Consensus       304 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~  330 (422)
T 3fvs_A          304 SYFVQFPQAMQRCRDHMIRSLQSV-GLK  330 (422)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTT-TCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc-CCe
Confidence             35666777888999999999987 454

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.89  E-value=2e-21  Score=201.34  Aligned_cols=218  Identities=14%  Similarity=0.136  Sum_probs=164.5

Q ss_pred             chhHHHHHHHHHhhhC-------CCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          209 NPTTVVVEEKMSALEG-------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       209 np~~~~Lee~LA~l~g-------~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      .+...++++.++++++       .++.+++++|++|+.+++..++++||+|+++.|.|.+....    +...|+++..++
T Consensus        95 ~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~~~  170 (427)
T 3dyd_A           95 SIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTL----AESMGIEVKLYN  170 (427)
T ss_dssp             TTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHH----HHHTTCEEEEEE
T ss_pred             CCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHH----HHHcCCEEEEEe
Confidence            3557789999999988       25677778888999999999999999999999999875533    445677776654


Q ss_pred             C-------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc-----cccccc
Q 012296          282 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSL  346 (466)
Q Consensus       282 ~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~-----~~~l~~  346 (466)
                      .       .|+++|+++++++ +++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.....     .....+
T Consensus       171 ~~~~~~~~~d~~~l~~~l~~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~  249 (427)
T 3dyd_A          171 LLPEKSWEIDLKQLEYLIDEK-TACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATL  249 (427)
T ss_dssp             EEGGGTTEECHHHHHSSCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGG
T ss_pred             cccccCCCCCHHHHHHHhccC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHh
Confidence            2       2899999999875 999999999999999999   99999999999999999999875321     111222


Q ss_pred             CCc---EEEECCccccCccccceeEEEEeC-------HHHHHHHHHHHHHhCCCchHHHHHHHHHhh-----HHHHHHHH
Q 012296          347 GAD---LVLHSATKFIGGHNDVLAGSISGS-------GKLVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQ  411 (466)
Q Consensus       347 gaD---ivv~S~sK~lgg~gdv~gG~ivg~-------~eli~~l~~~~~~~G~~lsp~~a~l~l~~L-----~tl~~R~~  411 (466)
                      +.+   +++.|+||.++++|. +.|+++++       +++++.+....... .+.++..+..+...+     +.+..+.+
T Consensus       250 ~~~~~vi~~~S~sK~~~~~G~-riG~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~a~~~~L~~~~~~~~~~~~~  327 (427)
T 3dyd_A          250 STDVPILSCGGLAKRWLVPGW-RLGWILIHDRRDIFGNEIRDGLVKLSQRI-LGPCTIVQGALKSILCRTPGEFYHNTLS  327 (427)
T ss_dssp             CSSCCEEEEEESTTTSSCGGG-CCEEEEEECSTTSSHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             CCCCcEEEEeeccccCCCcCc-ceEEEEecCcchhhHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            333   778999999988875 46777665       46777776654332 223444444333333     34666778


Q ss_pred             HHHHHHHHHHHHHHcCCCeEEE
Q 012296          412 QQNSTALRMAKILEAHPKVKRV  433 (466)
Q Consensus       412 ~~~~na~~La~~L~~~p~V~~V  433 (466)
                      +..++++.+.+.|+++|++..+
T Consensus       328 ~~~~~~~~l~~~L~~~~g~~~~  349 (427)
T 3dyd_A          328 FLKSNADLCYGALAAIPGLRPV  349 (427)
T ss_dssp             HHHHHHHHHHHHHHHSTTEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCceec
Confidence            8889999999999999887543

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.89  E-value=2e-21  Score=197.73  Aligned_cols=208  Identities=15%  Similarity=0.155  Sum_probs=160.8

Q ss_pred             HHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC
Q 012296          212 TVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  283 (466)
Q Consensus       212 ~~~Lee~LA~l~----g----~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~  283 (466)
                      ..++++.+++++    |    .++++++++|++|+.+++.+++++||+|+++.|.|.+....    +...|.++..++..
T Consensus        70 ~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~~~  145 (391)
T 3h14_A           70 LPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQI----LRALGLVPVDLPTA  145 (391)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHHTTCEEEEEECC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHH----HHHcCCEEEEeecC
Confidence            456777777765    3    25677778888999999999999999999999999986643    34568887777543


Q ss_pred             -------CHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc----cccccc-CC
Q 012296          284 -------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALSL-GA  348 (466)
Q Consensus       284 -------Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~----~~~l~~-ga  348 (466)
                             |+++|+++    ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+....    ...... +.
T Consensus       146 ~~~~~~~d~~~l~~~----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  221 (391)
T 3h14_A          146 PENRLQPVPADFAGL----DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDE  221 (391)
T ss_dssp             GGGTTSCCHHHHTTS----CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSS
T ss_pred             cccCCCCCHHHHHhc----CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCC
Confidence                   77888766    3899999999999999997   88899999999999999999875332    122222 46


Q ss_pred             cEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII---RGMKTLHLRVQQQNSTALRMAKILE  425 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l---~~L~tl~~R~~~~~~na~~La~~L~  425 (466)
                      ++++.|+||.++.+| .+.|++++++++++.++........+.++..++++.   ...+.+..+.++..++++.+.+.|+
T Consensus       222 ~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~  300 (391)
T 3h14_A          222 CYVINSFSKYFSMTG-WRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLP  300 (391)
T ss_dssp             SEEEEESSSTTCCTT-SCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEechhccCCcc-ceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999998666 457999999999999888777666565665544433   3445667777888889999999998


Q ss_pred             cCC
Q 012296          426 AHP  428 (466)
Q Consensus       426 ~~p  428 (466)
                      +++
T Consensus       301 ~~~  303 (391)
T 3h14_A          301 KAG  303 (391)
T ss_dssp             HHT
T ss_pred             HcC
Confidence            764

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.89  E-value=2.8e-21  Score=198.49  Aligned_cols=212  Identities=13%  Similarity=0.123  Sum_probs=161.2

Q ss_pred             hhHHHHHHHHHhhh----CC-----CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          210 PTTVVVEEKMSALE----GA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       210 p~~~~Lee~LA~l~----g~-----e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      +...++++.+++++    |.     ++++++++|++|+.+++.+++++||+|+++.+.|++....+    ...|.++..+
T Consensus        75 ~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~  150 (412)
T 2x5d_A           75 RGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGA----VIAGAQVRSV  150 (412)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HHHTCEEEEE
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHH----HHcCCEEEEe
Confidence            34567888888877    63     36777778889999999999999999999999999866443    3457777666


Q ss_pred             CCC-------CHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----cccc
Q 012296          281 DPA-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS  345 (466)
Q Consensus       281 d~~-------Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----~~l~  345 (466)
                      +..       |+++|+++++++ +++|++++|+||||.+++   +++|.++|+++|+++|+|++|......     ....
T Consensus       151 ~~~~~~~~~~d~~~l~~~i~~~-~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~  229 (412)
T 2x5d_A          151 PLVPGIDFFNELERAIRESIPK-PRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQ  229 (412)
T ss_dssp             ECSTTSCHHHHHHHHHHTEESC-CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGG
T ss_pred             ecCCccCCCCCHHHHHHhcccC-ceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhh
Confidence            432       568899998864 899999999999999986   688999999999999999998764321     1112


Q ss_pred             ----cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHH
Q 012296          346 ----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTA  417 (466)
Q Consensus       346 ----~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~----tl~~R~~~~~~na  417 (466)
                          .+.|+++.|+||+++.+| .+.|++++++++++.++........+.++...+.+...++    .+....++..+++
T Consensus       230 ~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  308 (412)
T 2x5d_A          230 VPGAKDIAVEFFTLSKSYNMAG-WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRR  308 (412)
T ss_dssp             STTGGGTEEEEEECC-CCSCTT-SCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHH
T ss_pred             ccCccCcEEEEecCccccCCcc-cceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence                357899999999998776 3579999999999988877665555555555544444443    3556667777888


Q ss_pred             HHHHHHHHcC
Q 012296          418 LRMAKILEAH  427 (466)
Q Consensus       418 ~~La~~L~~~  427 (466)
                      +.+.+.|+++
T Consensus       309 ~~l~~~L~~~  318 (412)
T 2x5d_A          309 DVLVKGLREA  318 (412)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHC
Confidence            8899988864

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.89  E-value=6.7e-21  Score=195.59  Aligned_cols=210  Identities=14%  Similarity=0.187  Sum_probs=155.1

Q ss_pred             HHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          212 TVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~----e-~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ..++++.+++++    |.    + +++++++|++|+.+++.+++++||+|+++++.|++....    +...|.++..++.
T Consensus        64 ~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~----~~~~g~~~~~v~~  139 (411)
T 2o0r_A           64 SAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPV----VAMAGAHRVTVPL  139 (411)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHH----HHHcCCEEEEeec
Confidence            456666666664    53    3 566666667999999999999999999999999986543    3445777666643


Q ss_pred             --------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----ccc--
Q 012296          283 --------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL--  344 (466)
Q Consensus       283 --------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----~~l--  344 (466)
                              .|+++|+++++++ +++|++++|+||+|.+.+   +++|+++|+++|+++|+|++|+.....     ...  
T Consensus       140 ~~~~~~~~~d~~~l~~~l~~~-~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~  218 (411)
T 2o0r_A          140 VPDGRGFALDADALRRAVTPR-TRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGF  218 (411)
T ss_dssp             EEETTEEECCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred             cccccCCCCCHHHHHHhhccC-ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhc
Confidence                    4899999999874 999999999999999986   589999999999999999998753221     111  


Q ss_pred             --ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHH
Q 012296          345 --SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTAL  418 (466)
Q Consensus       345 --~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~na~  418 (466)
                        ..+.|+++.|++|+++.+| .+.|++++++++++.++......+.+.++.....+...+    +.+....++..++++
T Consensus       219 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  297 (411)
T 2o0r_A          219 DGMAERTITISSAAKMFNCTG-WKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRD  297 (411)
T ss_dssp             TTTGGGEEEEEEHHHHTTCTT-TCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeechhhcCCcc-ceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence              1467999999999998776 457999999999988877655433332222222222222    335555666778888


Q ss_pred             HHHHHHHcC
Q 012296          419 RMAKILEAH  427 (466)
Q Consensus       419 ~La~~L~~~  427 (466)
                      .+.+.|+++
T Consensus       298 ~l~~~L~~~  306 (411)
T 2o0r_A          298 RLAAGLTEI  306 (411)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            888888875

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.89  E-value=7.8e-22  Score=203.49  Aligned_cols=213  Identities=16%  Similarity=0.157  Sum_probs=161.2

Q ss_pred             HHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHHc--cCCC--EEEEcCCCCcchHHHHHhhcccCCceEEE
Q 012296          212 TVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALV--PAGG--HIVTTTDCYRKTRIFIETVLPKMGITATV  279 (466)
Q Consensus       212 ~~~Lee~LA~l~g--------~e~~l~~sSGs~Ai~~al~all--~~Gd--~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~  279 (466)
                      ..++++.++++++        .++.+++++|++|+.+++.+++  ++||  +|+++.+.|.+....+    ...|.++..
T Consensus        84 ~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~----~~~g~~~~~  159 (437)
T 3g0t_A           84 LPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQC----RILGQKFES  159 (437)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHH----HHHTCCCEE
T ss_pred             hHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHH----HHcCCEEEE
Confidence            4678888888776        2466666667799999999998  9999  9999999999866443    345666666


Q ss_pred             eCC------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc---------
Q 012296          280 IDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---------  341 (466)
Q Consensus       280 vd~------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~---------  341 (466)
                      ++.      .|+++|+++++..++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+.....         
T Consensus       160 v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~  239 (437)
T 3g0t_A          160 FDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEP  239 (437)
T ss_dssp             EEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSS
T ss_pred             EeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCccccc
Confidence            653      27899999994335999999999999999986   777899999999999999998642211         


Q ss_pred             ----ccc-ccCCcEEEECCccccCccccceeEEEEeCHHHHH-H-----------------HHHHHHHhCCCchHHHHHH
Q 012296          342 ----KAL-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-Q-----------------IRNLHHVLGGALNPNAAYL  398 (466)
Q Consensus       342 ----~~l-~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~-~-----------------l~~~~~~~G~~lsp~~a~l  398 (466)
                          ... ..+.++++.|+||+++.+| .+.|++++++++++ .                 +...........++...++
T Consensus       240 ~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  318 (437)
T 3g0t_A          240 LYQPSVANYTDNYILALSSSKAFSYAG-QRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWG  318 (437)
T ss_dssp             CCCCCGGGTCSCEEEEEESTTTTSCGG-GCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHH
T ss_pred             chhhccCCCCCcEEEEEcCccCCCCcc-ceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHH
Confidence                111 2466799999999998666 35799999999888 7                 6655554444555555555


Q ss_pred             HHHhhHH-------HHHHHHHHHHHHHHHHHHHHcCCCe
Q 012296          399 IIRGMKT-------LHLRVQQQNSTALRMAKILEAHPKV  430 (466)
Q Consensus       399 ~l~~L~t-------l~~R~~~~~~na~~La~~L~~~p~V  430 (466)
                      +...++.       +..+.+++.++++.+.+.|+++ ++
T Consensus       319 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  356 (437)
T 3g0t_A          319 MAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GF  356 (437)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TE
T ss_pred             HHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence            5444443       5566778889999999999987 44

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.88  E-value=1.2e-21  Score=194.55  Aligned_cols=211  Identities=15%  Similarity=0.177  Sum_probs=159.4

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          204 YGRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~e-~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      +.+|+++...+|++.++++++.+ +.+++++|+ +++.+++..+  +||+|++++|.|.+...    .++..|+++..++
T Consensus        45 ~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~----~~~~~g~~~~~v~  118 (337)
T 3p1t_A           45 INRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRA----RIAVSGLRHFEIG  118 (337)
T ss_dssp             TTSCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHHH----HHTTSCCEEEEEC
T ss_pred             hccCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHHH----HHHHcCCEEEEec
Confidence            45567888999999999999984 355566665 8888888776  99999999999998653    3456788888876


Q ss_pred             C-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc---ccccCCcEEEE
Q 012296          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---ALSLGADLVLH  353 (466)
Q Consensus       282 ~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~---~l~~gaDivv~  353 (466)
                      .     .|+++|+++  . ++++|++++|+||||.+.|+++|.++|+++++ +|+|++|.......   ....+.++++.
T Consensus       119 ~~~~~~~d~~~l~~~--~-~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~  194 (337)
T 3p1t_A          119 LTDDLLLDPNDLAQV--S-RDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFR  194 (337)
T ss_dssp             BCTTSSBCHHHHTTC--C-TTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEE
T ss_pred             CCCCCCCCHHHHHhh--c-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEe
Confidence            3     378888876  2 37999999999999999999999999999997 56699987432211   12235679999


Q ss_pred             CCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL---IIRGMKTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       354 S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l---~l~~L~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      |+||+++.+| .+.|++++++++++.++.....++  .++.....   +++..+.+..++++..++++.+.+.|+++
T Consensus       195 S~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  268 (337)
T 3p1t_A          195 SFSKSYGLAG-LRLGALFGPSELIAAMKRKQWFCN--VGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL  268 (337)
T ss_dssp             ESSSTTCCTT-TCCEEEECCHHHHHHHHTTSCTTC--SCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eCchhccCcc-hheEEEEeCHHHHHHHHhhcCCCC--CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999998666 357999999999998876544333  23333222   23333456667778888889999999886

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.88  E-value=8.8e-22  Score=200.67  Aligned_cols=170  Identities=14%  Similarity=0.136  Sum_probs=138.8

Q ss_pred             hhHHHHHHHHHhhhCCC--c-EEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC---
Q 012296          210 PTTVVVEEKMSALEGAE--S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  283 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e--~-~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---  283 (466)
                      +..++++++++++++.+  + .+++++|++|+.+++.+++++||+|+++++.|.+..  +...+...|+++..++..   
T Consensus        46 ~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  123 (411)
T 3nnk_A           46 HYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHL--LCEIARRCRAEVHTIEVPWGE  123 (411)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHH--HHHHHHHcCCeEEEEecCCCC
Confidence            45688999999999974  3 345567889999999999999999999999997732  224455678888877644   


Q ss_pred             --CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECCccccC
Q 012296          284 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIG  360 (466)
Q Consensus       284 --Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~sK~lg  360 (466)
                        |+++|++++++.++++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+.. ......++|+++.|++|+++
T Consensus       124 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~  203 (411)
T 3nnk_A          124 VFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLG  203 (411)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTC
T ss_pred             CCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccC
Confidence              899999999753489999999999999999999999999999999999999765432 33345679999999999866


Q ss_pred             ccccceeEEEEeCHHHHHHHHHH
Q 012296          361 GHNDVLAGSISGSGKLVTQIRNL  383 (466)
Q Consensus       361 g~gdv~gG~ivg~~eli~~l~~~  383 (466)
                      ++.  ..|+++.+++++++++..
T Consensus       204 ~~~--g~g~~~~~~~~~~~~~~~  224 (411)
T 3nnk_A          204 GPS--GTSPITLSARMEEAIRRR  224 (411)
T ss_dssp             CCS--SEEEEEECHHHHHHHHTT
T ss_pred             CCC--ceEEEEECHHHHHHHhhc
Confidence            654  369999999998887754

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.88  E-value=1.3e-21  Score=198.72  Aligned_cols=215  Identities=14%  Similarity=0.142  Sum_probs=162.8

Q ss_pred             chhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC---
Q 012296          209 NPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e---~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---  282 (466)
                      .+..+++++.+++++|.+   +++++++|++|+.+++.+++++||+|+++++.|++.  .+...+...|.++..++.   
T Consensus        66 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~  143 (393)
T 1vjo_A           66 LALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGN--RLVDMAGRYGADVRTISKPWG  143 (393)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHH--HHHHHHHHcCCceEEEecCCC
Confidence            467788999999999984   355556777999999999999999999999999872  122334556888777763   


Q ss_pred             --CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECCcccc
Q 012296          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI  359 (466)
Q Consensus       283 --~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~sK~l  359 (466)
                        .|+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+.. ......++|+++.|+||++
T Consensus       144 ~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l  223 (393)
T 1vjo_A          144 EVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGL  223 (393)
T ss_dssp             CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTT
T ss_pred             CCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccc
Confidence              5899999999761389999999999999999999999999999999999999874321 2223457899999999999


Q ss_pred             CccccceeEEEEeCHHHHHHHHHHH--------------------HHhCCCchHHHHHHHHHhhHH-----HHHHHHHHH
Q 012296          360 GGHNDVLAGSISGSGKLVTQIRNLH--------------------HVLGGALNPNAAYLIIRGMKT-----LHLRVQQQN  414 (466)
Q Consensus       360 gg~gdv~gG~ivg~~eli~~l~~~~--------------------~~~G~~lsp~~a~l~l~~L~t-----l~~R~~~~~  414 (466)
                      ++++  ..|+++++++++++++...                    ...+++.++.....+...++.     +....++..
T Consensus       224 ~~~~--~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~  301 (393)
T 1vjo_A          224 GCSP--GASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQ  301 (393)
T ss_dssp             CSCS--SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             cCCC--ceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            9886  4599999999888774320                    001114455444444444443     345667778


Q ss_pred             HHHHHHHHHHHcC
Q 012296          415 STALRMAKILEAH  427 (466)
Q Consensus       415 ~na~~La~~L~~~  427 (466)
                      ++++.+.+.|++.
T Consensus       302 ~~~~~l~~~L~~~  314 (393)
T 1vjo_A          302 KNVEYLWERLEDI  314 (393)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc
Confidence            8899999999876

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.88  E-value=4.5e-21  Score=195.83  Aligned_cols=212  Identities=18%  Similarity=0.136  Sum_probs=162.3

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCH
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM  285 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dl  285 (466)
                      ..+...++++.|++++|.++.+++++|+.++..++..+.  .+||+|+++.+.|+++...+    ...|.++..++..|+
T Consensus        89 ~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~d~  164 (401)
T 2bwn_A           89 TTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGI----KRNAGPKRIFRHNDV  164 (401)
T ss_dssp             CBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHH----HHSCCCEEEECTTCH
T ss_pred             ChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHHHHHhcCCCCCEEEECchhhHHHHHHH----HHcCCeEEEEcCCCH
Confidence            346789999999999999889999999997777766654  48999999999999876443    346888888888889


Q ss_pred             HHHHHhhcC---CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-------cccc--cCCcEEEE
Q 012296          286 EGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------KALS--LGADLVLH  353 (466)
Q Consensus       286 e~Le~ai~~---~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~-------~~l~--~gaDivv~  353 (466)
                      ++|+++++.   .++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+...       ....  .+.|+++.
T Consensus       165 ~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~  244 (401)
T 2bwn_A          165 AHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNG  244 (401)
T ss_dssp             HHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEE
T ss_pred             HHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEe
Confidence            999988861   24899999999999999999999999999999999999998743221       0011  13589999


Q ss_pred             CCccccCccccceeEEEEeCHHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHc
Q 012296          354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       354 S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--~~G~~lsp~~a~l~l~~L~tl-----~~R~~~~~~na~~La~~L~~  426 (466)
                      |++|.++++|    |++++++++++.++....  .+....++..+..+...++.+     ....++..++++.+.+.|++
T Consensus       245 s~sK~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  320 (401)
T 2bwn_A          245 TLAKAYGVFG----GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKA  320 (401)
T ss_dssp             ESSSTTCSCC----EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             echhhccCCC----CEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999764    899999999888765432  222223344443333344332     45567778888999999987


Q ss_pred             C
Q 012296          427 H  427 (466)
Q Consensus       427 ~  427 (466)
                      +
T Consensus       321 ~  321 (401)
T 2bwn_A          321 L  321 (401)
T ss_dssp             H
T ss_pred             C
Confidence            5

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.88  E-value=1.1e-20  Score=195.51  Aligned_cols=221  Identities=14%  Similarity=0.142  Sum_probs=158.0

Q ss_pred             hhHHHHHHHHHhhhCCC----------cEEEeCCH-HHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEE
Q 012296          210 PTTVVVEEKMSALEGAE----------STVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e----------~~l~~sSG-s~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~  278 (466)
                      +.++.+.+.+++..|.+          +.+++++| ++|+.+++.+++++||+|++++|.|.+....    +...|.++.
T Consensus        82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~  157 (425)
T 2r2n_A           82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQS----LHPLGCNII  157 (425)
T ss_dssp             HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH----HGGGTCEEE
T ss_pred             HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHH----HHHcCCEEE
Confidence            34555666666656652          35655555 5999999999999999999999999986533    455677777


Q ss_pred             EeCC----CCHHHHHHhhcC-----------CCceEEEE-eCCCCCCcccccHH---HHHHHHHhcCCEEEEeCCCCCCC
Q 012296          279 VIDP----ADMEGLEAALNN-----------NNVSLFFT-ESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPL  339 (466)
Q Consensus       279 ~vd~----~Dle~Le~ai~~-----------~~tklV~l-esP~NPtG~v~dl~---~Ia~la~~~gillIvDea~a~~~  339 (466)
                      .++.    .|+++|+++++.           .++++|++ ++|+||||.+++.+   +|+++|+++|+++|+|++|....
T Consensus       158 ~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~  237 (425)
T 2r2n_A          158 NVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQ  237 (425)
T ss_dssp             EECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGB
T ss_pred             EeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCccccc
Confidence            7653    378999998872           24788877 68999999999755   89999999999999999986321


Q ss_pred             c-----ccccc---cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH------
Q 012296          340 N-----QKALS---LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------  405 (466)
Q Consensus       340 ~-----~~~l~---~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~t------  405 (466)
                      .     .....   .+.++++.|+||+++ +| .+.|+++++++++++++........+.++...+++...++.      
T Consensus       238 ~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~G-lRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~  315 (425)
T 2r2n_A          238 FNKFRVPTFLSMDVDGRVIRADSFSKIIS-SG-LRIGFLTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGF  315 (425)
T ss_dssp             SSSSCCCCTGGGCTTSCEEEEEESTTTTC-ST-TCCEEEEEEHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCccccCCCCCEEEEccchhhcc-Cc-cceEEEecCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchH
Confidence            1     11111   245699999999998 65 45799999999999988776655555566555444444432      


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHc-CCCeEEEeCC
Q 012296          406 ---LHLRVQQQNSTALRMAKILEA-HPKVKRVHYP  436 (466)
Q Consensus       406 ---l~~R~~~~~~na~~La~~L~~-~p~V~~V~yP  436 (466)
                         +....+++.++++.+.+.|++ .|++..+..|
T Consensus       316 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p  350 (425)
T 2r2n_A          316 MAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVP  350 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCC
Confidence               333445667788888899987 4665333333

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.88  E-value=4.1e-21  Score=196.86  Aligned_cols=213  Identities=15%  Similarity=0.148  Sum_probs=159.0

Q ss_pred             HHHHHHHHHhhh----C--C--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          212 TVVVEEKMSALE----G--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       212 ~~~Lee~LA~l~----g--~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      ..++++.+++++    |  .  ++++++++|++|+.+++.+++++||+|+++++.|++....+    ...|.++..++. 
T Consensus        80 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~  155 (406)
T 1xi9_A           80 LPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLV----KFYGGKPVEYRTI  155 (406)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HHTTCEEEEEEEE
T ss_pred             cHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHH----HHcCCEEEEeecC
Confidence            456777777765    2  2  45666666779999999999999999999999998865433    345777666542 


Q ss_pred             ------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc----ccccc--cC
Q 012296          283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALS--LG  347 (466)
Q Consensus       283 ------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~----~~~l~--~g  347 (466)
                            .|+++|+++++++ +++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+....    .....  .+
T Consensus       156 ~~~~~~~d~~~l~~~l~~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  234 (406)
T 1xi9_A          156 EEEDWQPDIDDIRKKITDR-TKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKD  234 (406)
T ss_dssp             GGGTSEECHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSS
T ss_pred             CCcCCcCCHHHHHHhhCcC-ceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCC
Confidence                  2799999999874 999999999999999986   89999999999999999999876432    11112  35


Q ss_pred             C-cEEEECCccccCccccceeEEEE--eCH----HHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHH
Q 012296          348 A-DLVLHSATKFIGGHNDVLAGSIS--GSG----KLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNST  416 (466)
Q Consensus       348 a-Divv~S~sK~lgg~gdv~gG~iv--g~~----eli~~l~~~~~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~n  416 (466)
                      . |+++.|+||+++++|. +.|+++  +++    +++++++...... .+.++..++.+...+    +.+....++..++
T Consensus       235 ~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  312 (406)
T 1xi9_A          235 VPVIVMNGLSKVYFATGW-RLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKER  312 (406)
T ss_dssp             SCEEEEEESTTTTCCGGG-CCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred             ceEEEEeccccccCCCcc-EEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            6 8999999999986663 468887  888    9999888766543 333444333333333    3355556777888


Q ss_pred             HHHHHHHHHcCCCeE
Q 012296          417 ALRMAKILEAHPKVK  431 (466)
Q Consensus       417 a~~La~~L~~~p~V~  431 (466)
                      ++.+.+.|+++|++.
T Consensus       313 ~~~l~~~L~~~~~~~  327 (406)
T 1xi9_A          313 RDYIYKRLNEIPGIS  327 (406)
T ss_dssp             HHHHHHHHHTSTTEE
T ss_pred             HHHHHHHHHhCCCCe
Confidence            899999999887664

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.88  E-value=8.9e-21  Score=195.55  Aligned_cols=210  Identities=17%  Similarity=0.191  Sum_probs=155.8

Q ss_pred             HHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          212 TVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~----e-~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ..++++.+++++    |.    + +.+++++|++|+.+++.+++++||+|++..+.|++....+    ...|.++..++.
T Consensus        79 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~  154 (429)
T 1yiz_A           79 HPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMV----KAAGGIPRFIPL  154 (429)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEEC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHH----HHcCCEEEEEeC
Confidence            456666666664    52    3 5566566679999999999999999999999999866443    345766666542


Q ss_pred             ---------------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc----
Q 012296          283 ---------------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----  340 (466)
Q Consensus       283 ---------------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~----  340 (466)
                                     .|+++|+++++++ +++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.....    
T Consensus       155 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~-~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~  233 (429)
T 1yiz_A          155 KPNKTGGTISSADWVLDNNELEALFNEK-TKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFE  233 (429)
T ss_dssp             BCCCSSSSEEGGGCBCCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSC
T ss_pred             CcccccccccccCcccCHHHHHHHhccC-ceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCC
Confidence                           4789999999864 999999999999999984   89999999999999999999875321    


Q ss_pred             ---cccc--ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH----------
Q 012296          341 ---QKAL--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----------  405 (466)
Q Consensus       341 ---~~~l--~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~t----------  405 (466)
                         ...+  ..+.|+++.|+||+++++| .+.|++++++++++.++..........++.....+...++.          
T Consensus       234 ~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  312 (429)
T 1yiz_A          234 HIRICTLPGMWERTITIGSAGKTFSLTG-WKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPEC  312 (429)
T ss_dssp             CCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTS
T ss_pred             CcChhhccCCcCceEEEecchhccCCCC-cceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHH
Confidence               1112  2467999999999999776 45799999999999887765433333444443333333333          


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHcC
Q 012296          406 -LHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       406 -l~~R~~~~~~na~~La~~L~~~  427 (466)
                       +....++..++++.+.+.|+++
T Consensus       313 ~~~~~~~~~~~~~~~l~~~L~~~  335 (429)
T 1yiz_A          313 YFNSISGELMAKRDYMASFLAEV  335 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC
Confidence             4555566778888888888875

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.88  E-value=9.1e-22  Score=198.44  Aligned_cols=216  Identities=13%  Similarity=0.077  Sum_probs=159.3

Q ss_pred             chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHccC-------------CCEEEEcCCCCcchHHHHHhhcccC
Q 012296          209 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPA-------------GGHIVTTTDCYRKTRIFIETVLPKM  273 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all~~-------------Gd~Vlv~~~~y~~t~~~~~~~l~~~  273 (466)
                      ....+++++++++++|.+  +.+++++|++|+.+++.+++.+             ||+|+++.+.|.++...+    ...
T Consensus        68 ~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~----~~~  143 (397)
T 3f9t_A           68 KLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGR----EMM  143 (397)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHH----HHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHH----HHc
Confidence            345668899999999874  4577788889999999988776             999999999999866443    345


Q ss_pred             CceEEEeCCC-----CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc--------
Q 012296          274 GITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN--------  340 (466)
Q Consensus       274 Gi~v~~vd~~-----Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~--------  340 (466)
                      |+++..++..     |+++|++++++.++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+..        
T Consensus       144 g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~  223 (397)
T 3f9t_A          144 DLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYK  223 (397)
T ss_dssp             TCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGC
T ss_pred             CceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccc
Confidence            8888888754     899999999872389999999999999999999999999999999999999874321        


Q ss_pred             -------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHh---------CC--CchHHHHHHHHH-
Q 012296          341 -------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL---------GG--ALNPNAAYLIIR-  401 (466)
Q Consensus       341 -------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~---------G~--~lsp~~a~l~l~-  401 (466)
                             ..... ++|+++.|++|+++++.. +|++++.++.+.+.++.....+         |.  ..+...++.++. 
T Consensus       224 ~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  301 (397)
T 3f9t_A          224 KKGVNYKFDFSL-GVDSITIDPHKMGHCPIP-SGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRY  301 (397)
T ss_dssp             CTTCCCCCSGGG-TCSEEECCTTTTTCCCSS-CEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHH
T ss_pred             cccccccccccc-cCCeEEEccccccCCCCC-ceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHH
Confidence                   11123 789999999999976652 3444445555555443222211         11  123344444443 


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 012296          402 -GMKTLHLRVQQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       402 -~L~tl~~R~~~~~~na~~La~~L~~~p~V~  431 (466)
                       ....+..++++..++++.+.+.|+++ ++.
T Consensus       302 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  331 (397)
T 3f9t_A          302 LGREGQRKIVNECMENTLYLYKKLKEN-NFK  331 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHC-CCE
Confidence             33455677788889999999999987 443

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.88  E-value=2.3e-21  Score=196.55  Aligned_cols=214  Identities=9%  Similarity=0.017  Sum_probs=158.0

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-----
Q 012296          210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----  282 (466)
                      +..+++++.+++++|.+  ..+++++|++|+.+++.+++++||+|+++++.|++..  +...+...|.++..++.     
T Consensus        42 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~  119 (392)
T 2z9v_A           42 LLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKG--FGYWAKRYSPHLLEIEVPYNEA  119 (392)
T ss_dssp             HHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHH--HHHHHHHHCSCEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHH--HHHHHHHcCCceEEeeCCCCCC
Confidence            45788999999999974  5666677789999999999999999999999998753  22334455777777653     


Q ss_pred             CCHHHHHHhhcC-CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECCccccC
Q 012296          283 ADMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIG  360 (466)
Q Consensus       283 ~Dle~Le~ai~~-~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~sK~lg  360 (466)
                      .|+++|++++++ .++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .....+++|+++.|+||+++
T Consensus       120 ~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~  199 (392)
T 2z9v_A          120 IDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLG  199 (392)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTC
T ss_pred             CCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCccccc
Confidence            479999999942 2489999999999999999999999999999999999999875432 22234578999999999877


Q ss_pred             ccccceeEEEEeCHHHHHHHHHHH--------------------HHhCCCchHHHHHHHHHhhHH-----HHHHHHHHHH
Q 012296          361 GHNDVLAGSISGSGKLVTQIRNLH--------------------HVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNS  415 (466)
Q Consensus       361 g~gdv~gG~ivg~~eli~~l~~~~--------------------~~~G~~lsp~~a~l~l~~L~t-----l~~R~~~~~~  415 (466)
                      ++..  .|+++++++++++++...                    ....++.+......+...++.     ++...++..+
T Consensus       200 ~~~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~  277 (392)
T 2z9v_A          200 APPG--LTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHAL  277 (392)
T ss_dssp             CCSC--CEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             CCCc--eeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            6432  389999999888776421                    011122333322222222222     4455677788


Q ss_pred             HHHHHHHHHHcC
Q 012296          416 TALRMAKILEAH  427 (466)
Q Consensus       416 na~~La~~L~~~  427 (466)
                      +++.+.+.|+++
T Consensus       278 ~~~~l~~~L~~~  289 (392)
T 2z9v_A          278 TAKAMRAGVTAM  289 (392)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            888899998875

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.88  E-value=5.8e-21  Score=194.15  Aligned_cols=210  Identities=17%  Similarity=0.126  Sum_probs=158.4

Q ss_pred             HHHHHHHHHhhhC-----CC-cEEEeCCHHHHHHHHHHHHccCC-----CEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          212 TVVVEEKMSALEG-----AE-STVIMASGMSASTVMLLALVPAG-----GHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       212 ~~~Lee~LA~l~g-----~e-~~l~~sSGs~Ai~~al~all~~G-----d~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      .+++.+.+.+.+|     .+ +.+++++|++|+.+++.+++++|     |+|+++.|.|.+....    +...|.++..+
T Consensus        72 r~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~----~~~~g~~~~~v  147 (396)
T 3jtx_A           72 RQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGA----TLLGGGEIHFA  147 (396)
T ss_dssp             HHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHH----HHHTTCEEEEE
T ss_pred             HHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHH----HHHcCCEEEEe
Confidence            3444444444445     24 66677777799999999999997     7999999999886543    34567777776


Q ss_pred             CC------CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHH---HHHHHHHhcCCEEEEeCCCCCCCccc--c---c--
Q 012296          281 DP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLNQK--A---L--  344 (466)
Q Consensus       281 d~------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~---~Ia~la~~~gillIvDea~a~~~~~~--~---l--  344 (466)
                      +.      .|+++|+++++++ +++|++++|+||||.+++.+   +|+++|+++|+++|+|++|.......  +   .  
T Consensus       148 ~~~~~g~~~d~~~l~~~~~~~-~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~  226 (396)
T 3jtx_A          148 NCPAPSFNPDWRSISEEVWKR-TKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQA  226 (396)
T ss_dssp             ECCTTTCCCCGGGSCHHHHHT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHH
T ss_pred             ecCCCCCccCHHHHHHhhccC-cEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhh
Confidence            53      2788999988774 99999999999999998755   59999999999999999987533211  1   1  


Q ss_pred             ------ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHH
Q 012296          345 ------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNS  415 (466)
Q Consensus       345 ------~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~  415 (466)
                            ..+.++++.|+||.++.+| .+.|++++++++++.++......+.+.++....++...+   +.+..+.++..+
T Consensus       227 ~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  305 (396)
T 3jtx_A          227 AAQLGRSRQKLLMFTSLSKRSNVPG-LRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQE  305 (396)
T ss_dssp             HHHTTCCCTTEEEEEESTTTSSCGG-GCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             hhhcccccCcEEEEeccccccCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                  2567899999999988776 457899999999999988777666666666555544444   456666777888


Q ss_pred             HHHHHHHHHHcC
Q 012296          416 TALRMAKILEAH  427 (466)
Q Consensus       416 na~~La~~L~~~  427 (466)
                      +++.+.+.|+++
T Consensus       306 ~~~~l~~~l~~~  317 (396)
T 3jtx_A          306 KFERVIPILQQV  317 (396)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhc
Confidence            888999999875

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.88  E-value=2.8e-21  Score=195.60  Aligned_cols=214  Identities=15%  Similarity=0.146  Sum_probs=159.9

Q ss_pred             CCchhHHHHHHHHHhh------hCC-CcEEEeCCH-HHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEE
Q 012296          207 YGNPTTVVVEEKMSAL------EGA-ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l------~g~-e~~l~~sSG-s~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~  278 (466)
                      |+++...++++.++++      .+. .+.+++++| ++++.+++.+++++||+|+++++.|++....    +...|.++.
T Consensus        66 y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~----~~~~g~~~~  141 (369)
T 3cq5_A           66 YPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPIL----AKGTHTEFI  141 (369)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCSTTCEEEEEESSCTHHHHH----HHHTTCEEE
T ss_pred             CCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcCCCCEEEEcCCChHHHHHH----HHHcCCEEE
Confidence            3344346888888888      443 344555555 5899999999999999999999999986543    344677777


Q ss_pred             EeC-----CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cccc----ccC-
Q 012296          279 VID-----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKAL----SLG-  347 (466)
Q Consensus       279 ~vd-----~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l----~~g-  347 (466)
                      .++     ..|+++|++++++.++++|++++|+||||.+.|++++.++++.+++++|+|++|+.+.. ....    ..+ 
T Consensus       142 ~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  221 (369)
T 3cq5_A          142 AVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPT  221 (369)
T ss_dssp             EEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTT
T ss_pred             EecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCC
Confidence            664     23789999998762389999999999999999999999999999999999999875432 1112    234 


Q ss_pred             CcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHH
Q 012296          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKIL  424 (466)
Q Consensus       348 aDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~L  424 (466)
                      .++++.|+||+++.+| .+.|++++++++++.++.....++  .++..++++...+   +.+..+.++..++++.+.+.|
T Consensus       222 ~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L  298 (369)
T 3cq5_A          222 KLVVSRTMSKAFDFAG-GRLGYFVANPAFIDAVMLVRLPYH--LSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARL  298 (369)
T ss_dssp             TEEEEEESSSTTSCGG-GCCEEEEECTHHHHHHHTTSCTTC--SCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEechHhcCCcc-cceEEEEeCHHHHHHHHHcCCCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6799999999998666 457999999999888876554443  4455444444433   345666777888899999999


Q ss_pred             HcC
Q 012296          425 EAH  427 (466)
Q Consensus       425 ~~~  427 (466)
                      ++.
T Consensus       299 ~~~  301 (369)
T 3cq5_A          299 EEL  301 (369)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            873

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.88  E-value=1.2e-21  Score=199.91  Aligned_cols=170  Identities=10%  Similarity=0.090  Sum_probs=139.5

Q ss_pred             chhHHHHHHHHHhhhCCCc--EE-EeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC--
Q 012296          209 NPTTVVVEEKMSALEGAES--TV-IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  283 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~--~l-~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~--  283 (466)
                      .+..+++++.+++++|.+.  .+ ++++|++|+.+++.+++++||+|+++++.|.+..  +...+...|+++..++..  
T Consensus        43 ~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  120 (416)
T 3isl_A           43 TGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYL--LTEIAERYGANVHMLECEWG  120 (416)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHH--HHHHHHhcCCeeEEEecCCC
Confidence            4568899999999999843  34 5578889999999999999999999999998732  234456678888887654  


Q ss_pred             ---CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECCcccc
Q 012296          284 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI  359 (466)
Q Consensus       284 ---Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~sK~l  359 (466)
                         |+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .+....++|+++.|+||++
T Consensus       121 ~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l  200 (416)
T 3isl_A          121 TVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCL  200 (416)
T ss_dssp             CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTT
T ss_pred             CCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCcccc
Confidence               899999999832489999999999999999999999999999999999999875432 3334568999999999986


Q ss_pred             CccccceeEEEEeCHHHHHHHHH
Q 012296          360 GGHNDVLAGSISGSGKLVTQIRN  382 (466)
Q Consensus       360 gg~gdv~gG~ivg~~eli~~l~~  382 (466)
                      +++.  ..|+++.+++++++++.
T Consensus       201 ~g~~--g~g~~~~~~~~~~~~~~  221 (416)
T 3isl_A          201 SVPS--GMAPITYNERVADVIAA  221 (416)
T ss_dssp             CCCS--SEEEEEECHHHHHHHHT
T ss_pred             CCCC--CeEEEEECHHHHHHhhc
Confidence            6654  36899999999888763

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.87  E-value=2.3e-20  Score=192.78  Aligned_cols=212  Identities=17%  Similarity=0.190  Sum_probs=168.3

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC-----
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----  283 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----  283 (466)
                      .+...+|++.++++++.++++++++|++|+.+++.++. +||+|+++++.|.+....    +...|+++.+++..     
T Consensus        51 ~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~----~~~~G~~~~~v~~~~~~~~  125 (424)
T 2po3_A           51 GPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG-LTGEVIMPSMTFAATPHA----LRWIGLTPVFADIDPDTGN  125 (424)
T ss_dssp             CHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT-CCSEEEEESSSCTHHHHH----HHHTTCEEEEECBCTTTSS
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC-CCCEEEECCCccHHHHHH----HHHcCCEEEEEecCCCcCC
Confidence            37889999999999999888888999999999998875 789999999999987643    34568888877632     


Q ss_pred             -CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc--cccccCCcEEEECCc--cc
Q 012296          284 -DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--KALSLGADLVLHSAT--KF  358 (466)
Q Consensus       284 -Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~--~~l~~gaDivv~S~s--K~  358 (466)
                       |+++|+++++++ +++|+++   ||+|.+.++++|.++|+++|+++|+|++++.+...  .++....|+++.|++  |+
T Consensus       126 ~d~~~l~~~i~~~-~~~v~~~---~~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~sk~K~  201 (424)
T 2po3_A          126 LDPDQVAAAVTPR-TSAVVGV---HLWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATKA  201 (424)
T ss_dssp             BCHHHHGGGCCTT-EEEEEEE---CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSS
T ss_pred             cCHHHHHHhhCcC-CcEEEEE---CCCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecccccCEEEEeCCCCCC
Confidence             789999999874 9999984   47899999999999999999999999998853322  222222589999998  87


Q ss_pred             cCccccceeEEEEeC-HHHHHHHHHHHHHhC------------CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 012296          359 IGGHNDVLAGSISGS-GKLVTQIRNLHHVLG------------GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILE  425 (466)
Q Consensus       359 lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G------------~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~  425 (466)
                      +++ +  .+|+++++ ++++++++.......            ..+++..+.+++..++.++...++..++++.+.+.|+
T Consensus       202 l~~-~--~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~~~L~  278 (424)
T 2po3_A          202 VNA-F--EGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLA  278 (424)
T ss_dssp             SCC-S--SCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccC-C--CCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            776 3  57999998 888888876543211            1345667777677777777778888888999999998


Q ss_pred             cCCCeEE
Q 012296          426 AHPKVKR  432 (466)
Q Consensus       426 ~~p~V~~  432 (466)
                      ++|++..
T Consensus       279 ~~~g~~~  285 (424)
T 2po3_A          279 DLPGVLV  285 (424)
T ss_dssp             SCTTEEE
T ss_pred             cCCCccc
Confidence            8877643

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.87  E-value=3.5e-21  Score=195.35  Aligned_cols=220  Identities=16%  Similarity=0.149  Sum_probs=161.1

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCCc--EE-EeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          204 YGRYGNPTTVVVEEKMSALEGAES--TV-IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~e~--~l-~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      |+.+..+..+++++.+++++|.+.  .+ ++++|++|+.+++.+++++||+|+++++.|++..  +...++..|.++.++
T Consensus        46 ~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v  123 (393)
T 2huf_A           46 LHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDR--SADMATRYGADVRVV  123 (393)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHH--HHHHHHHcCCeeEEE
Confidence            333345678899999999999842  44 5567779999999999999999999999998742  223345568888777


Q ss_pred             CC-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEEC
Q 012296          281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHS  354 (466)
Q Consensus       281 d~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S  354 (466)
                      +.     .|+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|+++..+.. .....+++|+++.|
T Consensus       124 ~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s  203 (393)
T 2huf_A          124 KSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTG  203 (393)
T ss_dssp             ECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECC
T ss_pred             eCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEEC
Confidence            63     5899999999762389999999999999999999999999999999999999764322 22224578999999


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHHH----H-H---------hC---------CCchHHHHHH---HHHhhH--HH
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLH----H-V---------LG---------GALNPNAAYL---IIRGMK--TL  406 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~~----~-~---------~G---------~~lsp~~a~l---~l~~L~--tl  406 (466)
                      +||+++++..  .|+++++++++++++...    . .         ++         ++.+......   ++..+.  .+
T Consensus       204 ~sK~l~g~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~  281 (393)
T 2huf_A          204 SQKVLGAPPG--ITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGL  281 (393)
T ss_dssp             SSSTTCCCSS--CEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             CCcccccCCC--eEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCH
Confidence            9998765432  388899999988876531    1 1         11         1223332222   222222  14


Q ss_pred             HHHHHHHHHHHHHHHHHHHcC
Q 012296          407 HLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       407 ~~R~~~~~~na~~La~~L~~~  427 (466)
                      ....++..++++.+.+.|+++
T Consensus       282 ~~~~~~~~~~~~~l~~~L~~~  302 (393)
T 2huf_A          282 PALIARHEDCAKRLYRGLQDA  302 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHc
Confidence            556677788899999999875

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.87  E-value=5.8e-21  Score=196.15  Aligned_cols=210  Identities=15%  Similarity=0.187  Sum_probs=158.7

Q ss_pred             hHHHHHHHHHhhhC------C--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          211 TTVVVEEKMSALEG------A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       211 ~~~~Lee~LA~l~g------~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ...++++.++++++      .  ++++++++|++|+.+++.+++++||+|+++.+.|++....    +...|.++..++.
T Consensus        80 g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~  155 (409)
T 2gb3_A           80 GIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAF----AKIAGVKLIPVTR  155 (409)
T ss_dssp             CCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHH----HHHHTCEEEEEEC
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHH----HHHcCCEEEEecc
Confidence            35677888887763      2  5677777778999999999999999999999999986543    3345777777654


Q ss_pred             C-----C-HHHHHHhhcCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCc----ccccc--cC
Q 012296          283 A-----D-MEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN----QKALS--LG  347 (466)
Q Consensus       283 ~-----D-le~Le~ai~~~~tklV~lesP~NPtG~v~---dl~~Ia~la~~~gillIvDea~a~~~~----~~~l~--~g  347 (466)
                      .     + +++|+++++++ +++|++++|+||+|.+.   ++++|.++|+++|+++|+|++|+....    ...+.  .+
T Consensus       156 ~~~~~~~~~~~l~~~l~~~-~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~  234 (409)
T 2gb3_A          156 RMEEGFAIPQNLESFINER-TKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESD  234 (409)
T ss_dssp             CGGGTSCCCTTGGGGCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCT
T ss_pred             CCCCCCccHHHHHHhhCcC-CeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCC
Confidence            3     2 68888888774 99999999999999987   488999999999999999999875432    11121  35


Q ss_pred             CcEEEECCccccCccccceeEEEEeCH-HHHHHHHHHHHHhCCCchHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHH
Q 012296          348 ADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRMAK  422 (466)
Q Consensus       348 aDivv~S~sK~lgg~gdv~gG~ivg~~-eli~~l~~~~~~~G~~lsp~~a~l~l~~L----~tl~~R~~~~~~na~~La~  422 (466)
                      .|+++.|++|+++.+| .+.|++++++ ++++.++....... ..++...+.+...+    +.++...++..++++.+.+
T Consensus       235 ~~i~~~s~sK~~g~~G-~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~  312 (409)
T 2gb3_A          235 KVVVIDSVSKKFSACG-ARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLK  312 (409)
T ss_dssp             TEEEEEESTTTTTCGG-GCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEecchhccCCcc-ceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999998766 3579999988 99998887665553 44555444443333    3355556677788888999


Q ss_pred             HHHcC
Q 012296          423 ILEAH  427 (466)
Q Consensus       423 ~L~~~  427 (466)
                      .|+++
T Consensus       313 ~L~~~  317 (409)
T 2gb3_A          313 KLEEH  317 (409)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            99875

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.87  E-value=2.3e-20  Score=189.80  Aligned_cols=210  Identities=17%  Similarity=0.099  Sum_probs=154.3

Q ss_pred             HHHHHHhhh----C--C--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC----
Q 012296          215 VEEKMSALE----G--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (466)
Q Consensus       215 Lee~LA~l~----g--~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----  282 (466)
                      +++.+++++    |  .  ++.+++++|++|+.+++.+++++||+|+++.|.|++....+    ...|.++..++.    
T Consensus        69 lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~v~~~~~~  144 (390)
T 1d2f_A           69 FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAI----EGNQRTVMPVALEKQA  144 (390)
T ss_dssp             HHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHH----HHTTCEEEEEECEECS
T ss_pred             HHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHH----HHCCCEEEEeecccCC
Confidence            666666654    5  2  45666677779999999999999999999999999866443    345777666542    


Q ss_pred             ----CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc-----ccccccC--C
Q 012296          283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLG--A  348 (466)
Q Consensus       283 ----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~-----~~~l~~g--a  348 (466)
                          .|+++|++++++.++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.....     .....+.  .
T Consensus       145 ~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~  224 (390)
T 1d2f_A          145 DGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGD  224 (390)
T ss_dssp             SSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSS
T ss_pred             CccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhh
Confidence                58999999998645899999999999999987   88999999999999999999875432     1112222  2


Q ss_pred             -cEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHH-HhC-CCchHHHHHHHHHhh----HHHHHHHHHHHHHHHHH
Q 012296          349 -DLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHH-VLG-GALNPNAAYLIIRGM----KTLHLRVQQQNSTALRM  420 (466)
Q Consensus       349 -Divv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~-~~G-~~lsp~~a~l~l~~L----~tl~~R~~~~~~na~~L  420 (466)
                       |. +.|+||+++.+| .+.|++++ ++++++.++.... ... .+.++...+++...+    +.++...++..++++.+
T Consensus       225 ~d~-~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l  302 (390)
T 1d2f_A          225 WAL-LTSGSKSFNIPA-LTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYI  302 (390)
T ss_dssp             EEE-EECSHHHHTCGG-GCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             Hhh-ccCccHhhcccC-hhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence             67 999999998666 35788887 4788888877654 233 244555444433333    34555566778888999


Q ss_pred             HHHHHc-CCCe
Q 012296          421 AKILEA-HPKV  430 (466)
Q Consensus       421 a~~L~~-~p~V  430 (466)
                      .+.|++ +|++
T Consensus       303 ~~~L~~~~~~~  313 (390)
T 1d2f_A          303 ADKMNAAFPEL  313 (390)
T ss_dssp             HHHHHHHCSSC
T ss_pred             HHHHHhhCCCC
Confidence            999988 6654

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.87  E-value=3.8e-21  Score=194.20  Aligned_cols=208  Identities=13%  Similarity=0.096  Sum_probs=155.0

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHHccC--CCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          212 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~----e~~l~~sSGs~Ai~~al~all~~--Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ..++++.+++++    |.    ++.+++++|++++.+++.+++++  ||+|+++.+.|.+....    +...|.++..++
T Consensus        61 ~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~~~  136 (376)
T 3ezs_A           61 EESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGA----AKFIKAKSLLMP  136 (376)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHH----HHHTTCEEEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHH----HHHcCCEEEEcc
Confidence            345566666554    63    56777778889999999999999  99999999999986543    445688887776


Q ss_pred             CCCHH----HHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----ccc------
Q 012296          282 PADME----GLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL------  344 (466)
Q Consensus       282 ~~Dle----~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~~l------  344 (466)
                      ..+.+    +++++++++ +++|++++|+||||.+.+   +++|+++|+++|+++|+|++|......    ...      
T Consensus       137 ~~~~~~~~~~l~~~~~~~-~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  215 (376)
T 3ezs_A          137 LTKENDFTPSLNEKELQE-VDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLA  215 (376)
T ss_dssp             CCGGGTSCCCCCHHHHHH-CSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHT
T ss_pred             cCCCCCcchhHHhhhccC-CCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccc
Confidence            43221    566666654 899999999999999987   667888899999999999998763221    111      


Q ss_pred             ---ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHH
Q 012296          345 ---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTAL  418 (466)
Q Consensus       345 ---~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~  418 (466)
                         ..+.++++.|+||++|.+| .+.|++++++++++.++......+.+.++..+..+...+   +.+..+.++..++++
T Consensus       216 ~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  294 (376)
T 3ezs_A          216 GNEAFKNVLVIHSLSKRSSAPG-LRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLK  294 (376)
T ss_dssp             TCTTCTTEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred             cccccCcEEEEecchhccCCcc-ceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence               3567899999999998666 457899999999999988766555555665554444433   345666677778888


Q ss_pred             HHHHHHH
Q 012296          419 RMAKILE  425 (466)
Q Consensus       419 ~La~~L~  425 (466)
                      .+.+.|+
T Consensus       295 ~l~~~l~  301 (376)
T 3ezs_A          295 LARKIFK  301 (376)
T ss_dssp             HHHHHST
T ss_pred             HHHHHhc
Confidence            8888876

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.87  E-value=9.6e-21  Score=197.52  Aligned_cols=210  Identities=14%  Similarity=0.167  Sum_probs=155.0

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC--
Q 012296          212 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--  281 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~----e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd--  281 (466)
                      ..+|++.+++++    |.    ++++++++|++|+.+++.+++++||+|++.+|.|++....+    ...|.++..++  
T Consensus        97 ~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~  172 (447)
T 3b46_A           97 RPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNI----ELCGGKVVYVPIN  172 (447)
T ss_dssp             CHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHH----HHcCCEEEEEeCC
Confidence            456777777765    43    34555555579999999999999999999999999866443    34566655543  


Q ss_pred             ---------------CCCHHHHHHhhcCCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCcc--
Q 012296          282 ---------------PADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ--  341 (466)
Q Consensus       282 ---------------~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~---dl~~Ia~la~~~gillIvDea~a~~~~~--  341 (466)
                                     ..|+++|+++++++ +++|++++|+||||.++   ++++|+++|++||+++|+|++|......  
T Consensus       173 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~~-~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~  251 (447)
T 3b46_A          173 PPKELDQRNTRGEEWTIDFEQFEKAITSK-TKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS  251 (447)
T ss_dssp             CCGGGGTSCBCSTTSEECHHHHHTTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC
T ss_pred             CccccccccccccCcccCHHHHHHhhccC-CeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCC
Confidence                           14789999999864 99999999999999997   5889999999999999999998753211  


Q ss_pred             --cc--c---ccCCcEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH------HH
Q 012296          342 --KA--L---SLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LH  407 (466)
Q Consensus       342 --~~--l---~~gaDivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~t------l~  407 (466)
                        ..  +   ..+.|+++.|+||+++.+|. +.|++++ ++++++.++........+.++...+++...++.      +.
T Consensus       252 ~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~-riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~  330 (447)
T 3b46_A          252 FTRIATLSPEIGQLTLTVGSAGKSFAATGW-RIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFE  330 (447)
T ss_dssp             CCCGGGSCHHHHTTEEEEEEHHHHTTCTTS-CCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred             CcCHHHcCCCCCCcEEEEecCchhcCCcch-hhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHH
Confidence              11  1   24789999999999997774 4799999 999999888765444433344433333333332      44


Q ss_pred             HHHHHHHHHHHHHHHHHHcC
Q 012296          408 LRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       408 ~R~~~~~~na~~La~~L~~~  427 (466)
                      ...++..++++.+.+.|+++
T Consensus       331 ~~~~~~~~~~~~l~~~L~~~  350 (447)
T 3b46_A          331 KMRQEYINKFKIFTSIFDEL  350 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHC
Confidence            45566778888888988875

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.87  E-value=4.1e-21  Score=192.57  Aligned_cols=215  Identities=11%  Similarity=0.120  Sum_probs=161.0

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          204 YGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      +.+|+++...+|+++++++++.+  +.+++++|++|+.+++..+.  ||+|+++.|.|.+...    .+...|.++..++
T Consensus        44 ~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~----~~~~~g~~~~~v~  117 (350)
T 3fkd_A           44 IRHYPEPDAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYED----ACRMYEHEVCFYP  117 (350)
T ss_dssp             GGSCCCTTCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT--TCEEEEEESCCHHHHH----HHHHTTCEEEEEE
T ss_pred             HhcCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC--CCEEEEeCCCcHHHHH----HHHHcCCeEEEEe
Confidence            44555666689999999999873  56666666699999998887  9999999999998653    3445788888887


Q ss_pred             C-CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcC-CEEEEeCCCCCCCccc------ccccCCcEEEE
Q 012296          282 P-ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-AIVCIDGTFATPLNQK------ALSLGADLVLH  353 (466)
Q Consensus       282 ~-~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~g-illIvDea~a~~~~~~------~l~~gaDivv~  353 (466)
                      . .+.+.+    +..++++|++++|+||||.+.++++|.++++.++ .++|+|++|.......      ....+.++++.
T Consensus       118 ~~~~~~~~----~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~  193 (350)
T 3fkd_A          118 SNEDIGEA----DFSNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVY  193 (350)
T ss_dssp             TTSCGGGS----CCTTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEE
T ss_pred             cCCccccC----ccCCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEe
Confidence            6 433333    2134899999999999999999999999998876 7999999987533211      11235569999


Q ss_pred             CCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHcCCCe
Q 012296          354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKILEAHPKV  430 (466)
Q Consensus       354 S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~t---l~~R~~~~~~na~~La~~L~~~p~V  430 (466)
                      |+||+++.+| .+.|+++++++++++++.....+  ..++..++++...++.   +..+++++.++++.+.+.|+++|++
T Consensus       194 S~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  270 (350)
T 3fkd_A          194 SFSHAYGIPG-LRIGYIVANKDFMKRVAAFSTPW--AVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGV  270 (350)
T ss_dssp             ESHHHHSCGG-GCCEEEECCHHHHHHHHTTCCTT--CSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTE
T ss_pred             cCchhccCcc-hheEeEEeCHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            9999998666 45799999999999887765433  3455555555555443   3345666668899999999998877


Q ss_pred             E
Q 012296          431 K  431 (466)
Q Consensus       431 ~  431 (466)
                      .
T Consensus       271 ~  271 (350)
T 3fkd_A          271 E  271 (350)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.87  E-value=9.7e-21  Score=195.56  Aligned_cols=210  Identities=10%  Similarity=0.039  Sum_probs=159.4

Q ss_pred             hHHHHHHHHHhhh-----CC--Cc---EEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhccc-CCceEEE
Q 012296          211 TTVVVEEKMSALE-----GA--ES---TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK-MGITATV  279 (466)
Q Consensus       211 ~~~~Lee~LA~l~-----g~--e~---~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~-~Gi~v~~  279 (466)
                      ...++++.+++++     +.  ++   .+++++|++|+.+++.+++++||+|+++.|.|++...    .+.. .|.++..
T Consensus        89 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~~g~~~~~  164 (430)
T 2x5f_A           89 GIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKL----VFNTRNGANLQT  164 (430)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHH----HHTTTTCCEEEE
T ss_pred             CCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHH----HHHHhcCCeEEE
Confidence            3678999999988     65  45   5555566699999999999999999999999998653    3445 6887777


Q ss_pred             eCC------CCHHHHHHhhcCC--CceEEEEeCCCCCCccccc---HHHHHHHHHh-----cCCEEEEeCCCCCCCcc--
Q 012296          280 IDP------ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHK-----KGAIVCIDGTFATPLNQ--  341 (466)
Q Consensus       280 vd~------~Dle~Le~ai~~~--~tklV~lesP~NPtG~v~d---l~~Ia~la~~-----~gillIvDea~a~~~~~--  341 (466)
                      ++.      .|+++|++++++.  ++++|++++|+||||.+.+   +++|.++|++     +|+++|+|++|......  
T Consensus       165 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~  244 (430)
T 2x5f_A          165 YPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDV  244 (430)
T ss_dssp             ECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSS
T ss_pred             EeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcc
Confidence            653      3789999998751  3899999999999999998   8899999999     99999999998753221  


Q ss_pred             ---c---cc-c-cCC---cEEEECCccccCccccceeEEEEe---CHHHHHHHHHHHHH----hCCCchHHHHHHHHHhh
Q 012296          342 ---K---AL-S-LGA---DLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRNLHHV----LGGALNPNAAYLIIRGM  403 (466)
Q Consensus       342 ---~---~l-~-~ga---Divv~S~sK~lgg~gdv~gG~ivg---~~eli~~l~~~~~~----~G~~lsp~~a~l~l~~L  403 (466)
                         .   .+ . .+.   ++++.|+||+++.+|. +.|++++   ++++++.++.....    ...+.++..++++...+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l  323 (430)
T 2x5f_A          245 YTQSLFTALTNLHSNAILPIRLDGATKEFFAWGF-RVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVL  323 (430)
T ss_dssp             CCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGG-CCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred             cchHHHHHHhhccCCcceEEEEEecccCCCCCCC-CeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHH
Confidence               1   11 2 345   7889999999987764 4788888   99999888776544    33445566555555545


Q ss_pred             H----HHHH---HHHHHHHHHHHHHHHHH
Q 012296          404 K----TLHL---RVQQQNSTALRMAKILE  425 (466)
Q Consensus       404 ~----tl~~---R~~~~~~na~~La~~L~  425 (466)
                      +    .++.   ..+++.++++.+.+.|+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  352 (430)
T 2x5f_A          324 KNNKQFDKEIEQNIQTLKERYEVTKEVVY  352 (430)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4    3333   66667788899999998

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.87  E-value=1.8e-20  Score=190.90  Aligned_cols=212  Identities=15%  Similarity=0.184  Sum_probs=166.7

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC---
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  283 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---  283 (466)
                      .++...+|++.++++++.++++++++|++|+.+++.++ +++||+|+++.+.|.++...+    ...|.++.+++..   
T Consensus        54 ~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~  129 (391)
T 3dr4_A           54 VGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSV----TYCGATPVLVDNDPRT  129 (391)
T ss_dssp             CSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECBCTTT
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHH----HHCCCEEEEEecCccc
Confidence            46889999999999999999999999999999999999 899999999999999876443    4568888887643   


Q ss_pred             ---CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccC--CcEEEECCc--
Q 012296          284 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT--  356 (466)
Q Consensus       284 ---Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~g--aDivv~S~s--  356 (466)
                         |+++|+++++++ +++|+   |+||+|.+.|+++|.++|+++|+++|+|++|+.+........+  .|+++.|++  
T Consensus       130 ~~~d~~~l~~~~~~~-~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~  205 (391)
T 3dr4_A          130 FNLDAAKLEALITPR-TKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGN  205 (391)
T ss_dssp             CSBCGGGSGGGCCTT-EEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBTT
T ss_pred             cCcCHHHHHHhcCCC-ceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCCC
Confidence               789999999874 88888   5789999999999999999999999999998865443222222  488888855  


Q ss_pred             cccCccccceeEEEEeC-HHHHHHHHHHHHHhC--------------CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 012296          357 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG--------------GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA  421 (466)
Q Consensus       357 K~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G--------------~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La  421 (466)
                      |++++ +  .+|+++.+ +++.++++.......              ..+.++.+.+.+..++.++..+++..++++.+.
T Consensus       206 K~l~~-g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~  282 (391)
T 3dr4_A          206 AIITT-G--EGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYE  282 (391)
T ss_dssp             SSSCC-B--SCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CcCCc-C--CeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99987 4  36777665 567777765542110              234566666666666777777888888999999


Q ss_pred             HHHHcCCCeE
Q 012296          422 KILEAHPKVK  431 (466)
Q Consensus       422 ~~L~~~p~V~  431 (466)
                      +.|++. ++.
T Consensus       283 ~~L~~~-g~~  291 (391)
T 3dr4_A          283 QKLARL-GNR  291 (391)
T ss_dssp             HHHGGG-TTS
T ss_pred             HHhhcC-Ccc
Confidence            999887 543

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.87  E-value=2.3e-20  Score=192.31  Aligned_cols=212  Identities=14%  Similarity=0.156  Sum_probs=167.3

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC-----
Q 012296          210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----  283 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----  283 (466)
                      ...+++++.+++++|.++++++++|++|+.+++.++ +++||+|+++.+.|.++...+    ...|.++.+++..     
T Consensus        42 ~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~  117 (418)
T 2c81_A           42 SMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATAV----LNVNALPVFVDVEADTYC  117 (418)
T ss_dssp             CHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECBCTTTCS
T ss_pred             HHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHH----HHcCCEEEEEecCCCCCC
Confidence            348999999999999988999999999999999999 899999999999999876443    3568888877642     


Q ss_pred             -CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc--cccccCCcEEEECC--ccc
Q 012296          284 -DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--KALSLGADLVLHSA--TKF  358 (466)
Q Consensus       284 -Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~--~~l~~gaDivv~S~--sK~  358 (466)
                       |+++|+++++++ +++|++   +||+|.+.++++|.++|+++|+++|+|++++.+...  .+...-.|+++.|+  +|+
T Consensus       118 ~d~~~l~~~i~~~-~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~  193 (418)
T 2c81_A          118 IDPQLIKSAITDK-TKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKV  193 (418)
T ss_dssp             BCHHHHGGGCCTT-EEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSS
T ss_pred             cCHHHHHHhhCCC-CeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEEeccCCcc
Confidence             799999999874 899886   468899999999999999999999999998876421  22221247888888  999


Q ss_pred             cCccccceeEEEEe-CHHHHHHHHHHHHH--------------hC------------CCchHHHHHHHHHhhHHHHHHHH
Q 012296          359 IGGHNDVLAGSISG-SGKLVTQIRNLHHV--------------LG------------GALNPNAAYLIIRGMKTLHLRVQ  411 (466)
Q Consensus       359 lgg~gdv~gG~ivg-~~eli~~l~~~~~~--------------~G------------~~lsp~~a~l~l~~L~tl~~R~~  411 (466)
                      +++ |  .+|++++ +++++++++..+..              +.            ..+.++.+.+.+..++.++.+++
T Consensus       194 ~~~-g--~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~  270 (418)
T 2c81_A          194 LTA-G--EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNA  270 (418)
T ss_dssp             SCS-S--SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHH
T ss_pred             cCC-C--CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            988 5  4799988 47888877754422              10            01345555555566777888888


Q ss_pred             HHHHHHHHHHHHHHcCCCeEE
Q 012296          412 QQNSTALRMAKILEAHPKVKR  432 (466)
Q Consensus       412 ~~~~na~~La~~L~~~p~V~~  432 (466)
                      +..++++.+.+.|+++|++..
T Consensus       271 ~~~~~~~~l~~~L~~~~g~~~  291 (418)
T 2c81_A          271 IREKNAMFLNDALSKIDGIKV  291 (418)
T ss_dssp             HHHHHHHHHHHHHTTSTTEEE
T ss_pred             HHHHHHHHHHHHhccCCCccc
Confidence            888999999999998887653

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.87  E-value=4.5e-21  Score=193.60  Aligned_cols=218  Identities=12%  Similarity=0.074  Sum_probs=159.6

Q ss_pred             CCCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHH---Hc---cCC-CEEEEcCCCCcchHHHHHhhccc----C
Q 012296          206 RYGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLA---LV---PAG-GHIVTTTDCYRKTRIFIETVLPK----M  273 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g~-e~~l~~sSGs~Ai~~al~a---ll---~~G-d~Vlv~~~~y~~t~~~~~~~l~~----~  273 (466)
                      +|+++...++++.|++++|. ++++++++|++|+.+++..   +.   ++| |+|++.++.|++...........    .
T Consensus        66 ~y~~~~~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~  145 (375)
T 2eh6_A           66 LYENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHK  145 (375)
T ss_dssp             TBCCHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTT
T ss_pred             ccCCHHHHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccC
Confidence            34567788999999999998 7778888888999988865   34   678 99999999998854333221111    1


Q ss_pred             Cce-----EEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCc----
Q 012296          274 GIT-----ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN----  340 (466)
Q Consensus       274 Gi~-----v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~~----  340 (466)
                      +..     +..++..|+++|+++++++ +++|++++|+||||.+.+    +++|.++|+++|+++|+|++|+....    
T Consensus       146 ~~~~~~~~~~~~~~~d~~~l~~~l~~~-~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~  224 (375)
T 2eh6_A          146 GFEPLVPGFSYAKLNDIDSVYKLLDEE-TAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEF  224 (375)
T ss_dssp             TTCSCCSSEEEECTTCHHHHHTTCCTT-EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred             CCCCCCCCceeCCCchHHHHHHHhcCC-eEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc
Confidence            222     5566667999999999874 999999999999999988    99999999999999999999884211    


Q ss_pred             ccccccC--CcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 012296          341 QKALSLG--ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTAL  418 (466)
Q Consensus       341 ~~~l~~g--aDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~  418 (466)
                      .....+|  .|++  |+||++++ | .+.|+++++++++++++..........++..+..+...++.+....++..++++
T Consensus       225 ~~~~~~~~~~d~~--s~SK~~~~-g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  300 (375)
T 2eh6_A          225 YAYQHFNLKPDVI--ALAKGLGG-G-VPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVEKLLPHVREVGN  300 (375)
T ss_dssp             SGGGGGTCCCSEE--EECGGGGT-T-SCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcCCCCCEE--EEcccccC-C-CCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1112335  7877  56699996 4 356888888888776654211112233566666666666666556677788889


Q ss_pred             HHHHHHHcCC
Q 012296          419 RMAKILEAHP  428 (466)
Q Consensus       419 ~La~~L~~~p  428 (466)
                      .+.+.|++++
T Consensus       301 ~l~~~L~~~~  310 (375)
T 2eh6_A          301 YFKEKLKELG  310 (375)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999998765

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.87  E-value=9.1e-21  Score=190.79  Aligned_cols=212  Identities=19%  Similarity=0.227  Sum_probs=167.6

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH---ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC---
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al---l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---  282 (466)
                      .+...++++.|++++|.++++++++|++|+.+++.++   +++||+|+++.+.|+++...+    ...|+++.+++.   
T Consensus        31 ~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~  106 (375)
T 2fnu_A           31 GKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANML----LESGYTPVFAGIKND  106 (375)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHH----HHTTCEEEECCBCTT
T ss_pred             ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHH----HHCCCEEEEeccCCC
Confidence            5788999999999999988888899999999999999   899999999999999876544    346888888764   


Q ss_pred             --CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccC--CcEEEECCc--
Q 012296          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT--  356 (466)
Q Consensus       283 --~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~g--aDivv~S~s--  356 (466)
                        .|+++|+++++++ +++|++++|   +|.+.|+++|.++|+++|+++|+|++++.+........+  .|+++.|++  
T Consensus       107 ~~~d~~~l~~~i~~~-~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~  182 (375)
T 2fnu_A          107 GNIDELALEKLINER-TKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAI  182 (375)
T ss_dssp             SSBCGGGSGGGCCTT-EEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred             CCCCHHHHHhhcCcC-ceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCCC
Confidence              3789999999874 899888766   899999999999999999999999998765432211122  378888888  


Q ss_pred             cccCccccceeEEEEeC-HHHHHHHHHHHHHh--------------C--CCchHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 012296          357 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL--------------G--GALNPNAAYLIIRGMKTLHLRVQQQNSTALR  419 (466)
Q Consensus       357 K~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~--------------G--~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~  419 (466)
                      |++++ |  .||+++.+ ++++++++......              +  ..+.+..+.+.+..++.++.++++..++++.
T Consensus       183 K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  259 (375)
T 2fnu_A          183 KPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALT  259 (375)
T ss_dssp             SSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             CCccc-c--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99976 5  46666654 77888877654211              1  1356666666666677788888889999999


Q ss_pred             HHHHHHcCCCeE
Q 012296          420 MAKILEAHPKVK  431 (466)
Q Consensus       420 La~~L~~~p~V~  431 (466)
                      +.+.|+++|++.
T Consensus       260 l~~~L~~~~~~~  271 (375)
T 2fnu_A          260 YDRIFKDNPYFT  271 (375)
T ss_dssp             HHHHHTTCSSEE
T ss_pred             HHHHhhcCCCcc
Confidence            999999988764

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.87  E-value=4.9e-21  Score=195.53  Aligned_cols=216  Identities=13%  Similarity=0.140  Sum_probs=158.6

Q ss_pred             hhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC----C
Q 012296          210 PTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----A  283 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----~  283 (466)
                      +...++++.+++++|.  ++.+++++|++|+.+++.+++++||+|++..+.|++....+    ...|.++..++.    .
T Consensus        74 ~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~~~~~~  149 (397)
T 2zyj_A           74 EGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAF----RLQGPRFLTVPAGEEGP  149 (397)
T ss_dssp             TCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HTTCCEEEEEEEETTEE
T ss_pred             CCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHH----HHcCCEEEecCcCCCCC
Confidence            3467899999999986  34555555558999999999999999999999999866443    346777666643    3


Q ss_pred             CHHHHHHhhcCCCceEEE-EeCCCCCCcccccH---HHHHHHHHhcCCEEEEeCCCCCCCc-----cccccc------CC
Q 012296          284 DMEGLEAALNNNNVSLFF-TESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLN-----QKALSL------GA  348 (466)
Q Consensus       284 Dle~Le~ai~~~~tklV~-lesP~NPtG~v~dl---~~Ia~la~~~gillIvDea~a~~~~-----~~~l~~------ga  348 (466)
                      |+++|++++++.++++|+ +++|+||||.+.+.   ++|+++|+++|+++|+|++|.....     .....+      +.
T Consensus       150 d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~  229 (397)
T 2zyj_A          150 DLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPG  229 (397)
T ss_dssp             CHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCC
T ss_pred             CHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCe
Confidence            799999999753488874 68999999999875   4899999999999999999876432     111222      34


Q ss_pred             cEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQQQNSTALRMAKI  423 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L-----~tl~~R~~~~~~na~~La~~  423 (466)
                      ++++.|+||+++ +| .+.|++++++++++.++..........++..+.++...+     +.+....+++.++++.+.+.
T Consensus       230 ~i~~~s~sK~~~-~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  307 (397)
T 2zyj_A          230 VIYLGSFSKVLS-PG-LRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHA  307 (397)
T ss_dssp             EEEEEESTTTTC-GG-GCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccccc-cc-ceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999 55 457999999999998877654433223455444444433     23455566677888889999


Q ss_pred             HHc-CC-CeE
Q 012296          424 LEA-HP-KVK  431 (466)
Q Consensus       424 L~~-~p-~V~  431 (466)
                      |++ .| ++.
T Consensus       308 L~~~~~~g~~  317 (397)
T 2zyj_A          308 LDREVPKEVR  317 (397)
T ss_dssp             HHHHSCTTSE
T ss_pred             HHHHCCCCeE
Confidence            987 46 354

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.87  E-value=7.9e-21  Score=192.96  Aligned_cols=210  Identities=19%  Similarity=0.230  Sum_probs=169.7

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC----
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----  282 (466)
                      ..+...++++.++++++.++++++++|++|+.+++.++ +++||+|+++.++|+++...    +...|+++.+++.    
T Consensus        37 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~  112 (393)
T 1mdo_A           37 TGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNM----IVLLGANPVMVDVDRDT  112 (393)
T ss_dssp             SSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHH----HHHTTCEEEEECBCTTT
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHH----HHHCCCEEEEEeccCCc
Confidence            45888999999999999998999999999999999999 89999999999999987643    3456888887763    


Q ss_pred             --CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccC-CcEEEECCc--c
Q 012296          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG-ADLVLHSAT--K  357 (466)
Q Consensus       283 --~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~g-aDivv~S~s--K  357 (466)
                        .|+++|+++++++ +++|+++   ||+|.+.++++|.++|+++|+++|+|++++.+.......++ .|+++.|++  |
T Consensus       113 ~~~d~~~l~~~l~~~-~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~k~K  188 (393)
T 1mdo_A          113 LMVTPEHIEAAITPQ-TKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIK  188 (393)
T ss_dssp             CCBCHHHHHHHCCTT-EEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTS
T ss_pred             CCCCHHHHHHhcCCC-ceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCeecCCCCeEEEeCCCCC
Confidence              3799999999874 8999874   57899999999999999999999999999865332222345 899999999  9


Q ss_pred             ccCccccceeEEEEeC-HHHHHHHHHHHHHh----------------------C--CCchHHHHHHHHHhhHHHHHHHHH
Q 012296          358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHVL----------------------G--GALNPNAAYLIIRGMKTLHLRVQQ  412 (466)
Q Consensus       358 ~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~----------------------G--~~lsp~~a~l~l~~L~tl~~R~~~  412 (466)
                      +++++   .+|+++++ ++++++++......                      |  ..+++..+.+++..++.++..+++
T Consensus       189 ~l~~~---~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~  265 (393)
T 1mdo_A          189 NITCA---EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNAR  265 (393)
T ss_dssp             SSCSS---SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHH
T ss_pred             ccccc---cceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99763   47898886 78888877643210                      1  124666666666677777778888


Q ss_pred             HHHHHHHHHHHHHcCC
Q 012296          413 QNSTALRMAKILEAHP  428 (466)
Q Consensus       413 ~~~na~~La~~L~~~p  428 (466)
                      ..++++.+.+.|++++
T Consensus       266 ~~~~~~~l~~~L~~~~  281 (393)
T 1mdo_A          266 RAAIAAQYHQAMADLP  281 (393)
T ss_dssp             HHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            8889999999999876

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.87  E-value=6.6e-21  Score=194.40  Aligned_cols=220  Identities=14%  Similarity=0.141  Sum_probs=164.0

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc-------CC-CEEEEcCCCCcchHHHHHhh----
Q 012296          202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETV----  269 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~-------~G-d~Vlv~~~~y~~t~~~~~~~----  269 (466)
                      +.+.++.++...+++++++++++.++++++++|++|+.+++..++.       +| |+|++.++.|++........    
T Consensus        73 ~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~  152 (406)
T 4adb_A           73 HTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQP  152 (406)
T ss_dssp             CCCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCG
T ss_pred             cccCCcCCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCc
Confidence            3345567888999999999999999899999999999999988765       66 99999999999864332221    


Q ss_pred             -----cccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccc-----cHHHHHHHHHhcCCEEEEeCCCCCCC
Q 012296          270 -----LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV-----DVKLVSDLCHKKGAIVCIDGTFATPL  339 (466)
Q Consensus       270 -----l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~-----dl~~Ia~la~~~gillIvDea~a~~~  339 (466)
                           +...+..+..++..|+++|+++++++ +++|+++ |+||+|.+.     ++++|.++|++||++||+|++|....
T Consensus       153 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~-~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~  230 (406)
T 4adb_A          153 AYSQDFAPLPADIRHAAYNDINSASALIDDS-TCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVG  230 (406)
T ss_dssp             GGTGGGCSCCSSEEEECTTCHHHHHTTCSTT-EEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             cccccCCCCCCCceEeCCCcHHHHHHHhcCC-eEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence                 11122456667778999999999864 9999998 999999765     68999999999999999999986321


Q ss_pred             c------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHH--HHHHH
Q 012296          340 N------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL--HLRVQ  411 (466)
Q Consensus       340 ~------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl--~~R~~  411 (466)
                      .      ........|++  +++|.++ +| .++|++++++++++.++..........++..+..+...++.+  +...+
T Consensus       231 ~~g~~~~~~~~~~~~d~~--t~sK~~~-~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  306 (406)
T 4adb_A          231 RTGELYAYMHYGVTPDLL--TTAKALG-GG-FPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLN  306 (406)
T ss_dssp             TTSSSSHHHHHTCCCSEE--EECGGGG-TT-SCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHH
T ss_pred             ccchhHHHHhcCCCCCEE--Eechhhc-CC-CCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence            1      12223456777  5699999 44 468999999999887765433333445666666666666554  45566


Q ss_pred             HHHHHHHHHHHHHHcC
Q 012296          412 QQNSTALRMAKILEAH  427 (466)
Q Consensus       412 ~~~~na~~La~~L~~~  427 (466)
                      +..++++.+.+.|++.
T Consensus       307 ~~~~~~~~l~~~l~~~  322 (406)
T 4adb_A          307 GVKQRHDWFVERLNTI  322 (406)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6777788888877754

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.87  E-value=1.6e-20  Score=196.51  Aligned_cols=216  Identities=16%  Similarity=0.131  Sum_probs=158.0

Q ss_pred             hHHHHHHHHHhhh----CC---CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          211 TTVVVEEKMSALE----GA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       211 ~~~~Lee~LA~l~----g~---e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      ...+|++.|++++    |.   ++++++++|++|+.+++.+++++||+|+++.|.|.+....+    ...|.++..++. 
T Consensus       119 g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~  194 (448)
T 3aow_A          119 GFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAF----NFYEPQYIQIPLD  194 (448)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HTTCCEEEEEEEE
T ss_pred             CcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHH----HHcCCEEEEeccC
Confidence            3567888888877    75   44555566669999999999999999999999999866443    346777666643 


Q ss_pred             ---CCHHHHHHhhc----C-CCceEEE-EeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----cccc
Q 012296          283 ---ADMEGLEAALN----N-NNVSLFF-TESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS  345 (466)
Q Consensus       283 ---~Dle~Le~ai~----~-~~tklV~-lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----~~l~  345 (466)
                         .|+++|+++++    + .++++|+ +++|+||||.+++   +++|.++|+++|+++|+|++|......     ....
T Consensus       195 ~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~  274 (448)
T 3aow_A          195 DEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKA  274 (448)
T ss_dssp             TTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGG
T ss_pred             CCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHh
Confidence               47999999987    5 2489985 6899999999986   568999999999999999998754321     1112


Q ss_pred             ---cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH------HHHHHHHHHHHH
Q 012296          346 ---LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK------TLHLRVQQQNST  416 (466)
Q Consensus       346 ---~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~------tl~~R~~~~~~n  416 (466)
                         .+.++++.|+||+++ +| .+.|++++++++++++.........+.++...+++...++      .+....+++.++
T Consensus       275 ~~~~~~vi~~~S~SK~~~-~G-lriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~  352 (448)
T 3aow_A          275 LDNEGRVIYLGTFSKILA-PG-FRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPR  352 (448)
T ss_dssp             GCTTSCEEEEEESTTTTC-GG-GCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEccchhhcc-cc-ccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence               246799999999998 65 4689999999999988876554333334444444333332      344455566688


Q ss_pred             HHHHHHHHHc-CC-CeEE
Q 012296          417 ALRMAKILEA-HP-KVKR  432 (466)
Q Consensus       417 a~~La~~L~~-~p-~V~~  432 (466)
                      ++.+.+.|++ .| ++..
T Consensus       353 ~~~l~~~L~~~~~~g~~~  370 (448)
T 3aow_A          353 RDAMLEALEEFMPEGVKW  370 (448)
T ss_dssp             HHHHHHHHHHHCCTTCEE
T ss_pred             HHHHHHHHHHhCCCCeEE
Confidence            8899999987 46 4543

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.87  E-value=1.3e-20  Score=194.66  Aligned_cols=211  Identities=14%  Similarity=0.154  Sum_probs=155.5

Q ss_pred             hHHHHHHHHHhhh----C---C--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          211 TTVVVEEKMSALE----G---A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       211 ~~~~Lee~LA~l~----g---~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ...++++.+++++    |   .  ++.+++++|++|+.+++.+++++||+|+++.|.|.+....+    ...|.++..++
T Consensus        86 g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~v~  161 (425)
T 1vp4_A           86 GDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAF----RQYLANFVVVP  161 (425)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HTTTCEEEEEE
T ss_pred             CCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHH----HHcCCEEEEec
Confidence            4567788888877    7   3  34555555569999999999999999999999999866443    34677776664


Q ss_pred             C----CCHHHHHHhhcC-------CCceEEE-EeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc-----c
Q 012296          282 P----ADMEGLEAALNN-------NNVSLFF-TESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----Q  341 (466)
Q Consensus       282 ~----~Dle~Le~ai~~-------~~tklV~-lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~-----~  341 (466)
                      .    .|+++|++++++       .++++|+ +++|+||||.+.+   +++|+++|+++|+++|+|++|+....     .
T Consensus       162 ~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~  241 (425)
T 1vp4_A          162 LEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVD  241 (425)
T ss_dssp             EETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCC
T ss_pred             cCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCc
Confidence            3    379999998875       2489984 7899999999986   57899999999999999999875432     1


Q ss_pred             cc--c-ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH------HHHHHHH
Q 012296          342 KA--L-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQQ  412 (466)
Q Consensus       342 ~~--l-~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~t------l~~R~~~  412 (466)
                      ..  + ..+.++++.|+||+++ +| .+.|++++++++++.++........+.++..++++...++.      +....++
T Consensus       242 ~~~~~~~~~~~i~~~s~sK~~~-~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  319 (425)
T 1vp4_A          242 PIFKIGGPERVVLLNTFSKVLA-PG-LRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIEL  319 (425)
T ss_dssp             CHHHHHCTTTEEEEEESTTTTC-GG-GCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHH
T ss_pred             CHHHhCCCCCEEEEeccccccc-cc-cceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            11  1 2256799999999999 65 46899999999999888766544333455555555444433      3445556


Q ss_pred             HHHHHHHHHHHHHcC
Q 012296          413 QNSTALRMAKILEAH  427 (466)
Q Consensus       413 ~~~na~~La~~L~~~  427 (466)
                      +.++++.+.+.|+++
T Consensus       320 ~~~~~~~l~~~L~~~  334 (425)
T 1vp4_A          320 YRRKRTVMLNALEEY  334 (425)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            678888898888874

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.87  E-value=9.2e-21  Score=188.83  Aligned_cols=212  Identities=10%  Similarity=0.041  Sum_probs=154.9

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-----
Q 012296          210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----  282 (466)
                      +...++++.+++++|.+  +.+++++|++|+.+++.+++++||+|+++++.|++..  +...+...|.++..++.     
T Consensus        34 ~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~  111 (352)
T 1iug_A           34 EVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDT  111 (352)
T ss_dssp             HHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCC
Confidence            45688999999999985  4556667889999999999999999999999999864  22344556888877754     


Q ss_pred             CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhc--CCEEEEeCCCCCCCc-ccccccCCcEEEECCcccc
Q 012296          283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI  359 (466)
Q Consensus       283 ~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~--gillIvDea~a~~~~-~~~l~~gaDivv~S~sK~l  359 (466)
                      .|+++|++   + ++++|++++|+||||.+.|+++|.++|+++  |+++|+|++++.+.. ......++|+++.|+||++
T Consensus       112 ~d~~~l~~---~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~  187 (352)
T 1iug_A          112 PRPEDVAK---E-GYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGL  187 (352)
T ss_dssp             CCTTTSCC---S-SCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTT
T ss_pred             CCHHHHhc---c-CCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccc
Confidence            25666655   3 489999999999999999999999999999  999999999864322 2223357899999999977


Q ss_pred             CccccceeEEEEeCHHHHHH---------HHHHH-----HHhCCCchHHHHHHHHHhhH----HHHHHHHHHHHHHHHHH
Q 012296          360 GGHNDVLAGSISGSGKLVTQ---------IRNLH-----HVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMA  421 (466)
Q Consensus       360 gg~gdv~gG~ivg~~eli~~---------l~~~~-----~~~G~~lsp~~a~l~l~~L~----tl~~R~~~~~~na~~La  421 (466)
                      +++.  ..|+++.+++++++         ++...     ....++.+......+...++    .++...++..++++.+.
T Consensus       188 ~~~~--g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~  265 (352)
T 1iug_A          188 MCPP--GLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLY  265 (352)
T ss_dssp             CCCS--CEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred             cCCC--ceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7653  25888889887755         32111     11123334333322222222    25566777888999999


Q ss_pred             HHHHcCCCe
Q 012296          422 KILEAHPKV  430 (466)
Q Consensus       422 ~~L~~~p~V  430 (466)
                      +.|+++ ++
T Consensus       266 ~~L~~~-g~  273 (352)
T 1iug_A          266 GVGEEG-GL  273 (352)
T ss_dssp             HHHHHT-TC
T ss_pred             HHHHHC-CC
Confidence            999876 44

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.86  E-value=5.3e-21  Score=193.17  Aligned_cols=215  Identities=14%  Similarity=0.149  Sum_probs=160.7

Q ss_pred             chhHHHHHHHHHhhhCCC--c-EEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC---
Q 012296          209 NPTTVVVEEKMSALEGAE--S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e--~-~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---  282 (466)
                      .+...+++++++++++.+  + .+++++|++|+..++.+++++||+|+++.+.|.+..  +...+...|.++..++.   
T Consensus        55 ~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~  132 (393)
T 3kgw_A           55 LQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMR--AAEIADRIGARVHQMIKKPG  132 (393)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCC
Confidence            456788999999999874  2 455677789999999999999999999988876431  22345566888777652   


Q ss_pred             --CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEECCcccc
Q 012296          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI  359 (466)
Q Consensus       283 --~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S~sK~l  359 (466)
                        .|+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+. .......++|+++.|+||++
T Consensus       133 ~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~  212 (393)
T 3kgw_A          133 EHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVL  212 (393)
T ss_dssp             CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTT
T ss_pred             CCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccc
Confidence              489999999986348999999999999999999999999999999999999987432 23334567899999999988


Q ss_pred             CccccceeEEEEeCHHHHHHHHHHHH--------------Hh---------CCCchHHHHHHHHHhhH---H--HHHHHH
Q 012296          360 GGHNDVLAGSISGSGKLVTQIRNLHH--------------VL---------GGALNPNAAYLIIRGMK---T--LHLRVQ  411 (466)
Q Consensus       360 gg~gdv~gG~ivg~~eli~~l~~~~~--------------~~---------G~~lsp~~a~l~l~~L~---t--l~~R~~  411 (466)
                      +++.  ..|++++++++++++.....              .+         ..+.+......+...++   .  ++...+
T Consensus       213 ~~~~--g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~  290 (393)
T 3kgw_A          213 NAPP--GISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWR  290 (393)
T ss_dssp             CCCS--SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cCCC--ceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            6554  26899999999888764221              11         12233333332222222   2  456677


Q ss_pred             HHHHHHHHHHHHHHcC
Q 012296          412 QQNSTALRMAKILEAH  427 (466)
Q Consensus       412 ~~~~na~~La~~L~~~  427 (466)
                      +..++++.+.+.|+++
T Consensus       291 ~~~~~~~~l~~~L~~~  306 (393)
T 3kgw_A          291 RHREATAHLHKHLQEM  306 (393)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            7888999999999876

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.86  E-value=1.6e-20  Score=187.62  Aligned_cols=213  Identities=11%  Similarity=0.075  Sum_probs=154.7

Q ss_pred             hhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC----
Q 012296          210 PTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----  282 (466)
                      +..+++++.+++++|.   ++++++++|++|+.+++.+++++ +.+++..+.|. .  .+...+...|+++.+++.    
T Consensus        43 ~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~-~--~~~~~~~~~g~~~~~v~~~~~~  118 (362)
T 3ffr_A           43 EVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFS-K--RFYEFAGELGREAYKEEAAFGK  118 (362)
T ss_dssp             HHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHH-H--HHHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHH-H--HHHHHHHHhCCCeEEEecCCCC
Confidence            5567899999999986   23666677889999999999987 55555555554 1  122345566888887753    


Q ss_pred             -CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhc-CCEEEEeCCCCCCCcccccccCCcEEEECCccccC
Q 012296          283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK-GAIVCIDGTFATPLNQKALSLGADLVLHSATKFIG  360 (466)
Q Consensus       283 -~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~-gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lg  360 (466)
                       .|+++|+  +++ ++++|++++|+||||.+.|+++|.++|+++ |+++|+|++++.+........ +|+++.|+||+++
T Consensus       119 ~~d~~~l~--~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~~-~d~~~~s~~K~~~  194 (362)
T 3ffr_A          119 GFYPADIT--VPA-DAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWTK-IDSVFFSVQKCFG  194 (362)
T ss_dssp             CCCGGGCC--CCT-TCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTTS-CSEEEEETTSTTC
T ss_pred             CCCHHHHh--ccC-CccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccChhH-CcEEEEecccccC
Confidence             2788887  555 499999999999999999999999999999 999999999875442222222 8999999999999


Q ss_pred             ccccceeEEEEeCHHHHHHHHHHHHH---------------------hCCCchHHHHHHHHHhhHH-----HHHHHHHHH
Q 012296          361 GHNDVLAGSISGSGKLVTQIRNLHHV---------------------LGGALNPNAAYLIIRGMKT-----LHLRVQQQN  414 (466)
Q Consensus       361 g~gdv~gG~ivg~~eli~~l~~~~~~---------------------~G~~lsp~~a~l~l~~L~t-----l~~R~~~~~  414 (466)
                      ++.+  +|+++.+++++++++.....                     ...+.+....+.+...++.     ++.++++..
T Consensus       195 ~~~G--~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  272 (362)
T 3ffr_A          195 LPAG--LGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTE  272 (362)
T ss_dssp             CCSC--CEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             CCCc--eEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            4432  58888999998887765430                     0222333332222223321     466778888


Q ss_pred             HHHHHHHHHHHcCCCeEE
Q 012296          415 STALRMAKILEAHPKVKR  432 (466)
Q Consensus       415 ~na~~La~~L~~~p~V~~  432 (466)
                      ++++.+.+.|+++|++..
T Consensus       273 ~~~~~l~~~L~~~~g~~~  290 (362)
T 3ffr_A          273 EKAALINTYIESSKVFSF  290 (362)
T ss_dssp             HHHHHHHHHHHHCSSEEE
T ss_pred             HHHHHHHHHHHHccCcee
Confidence            999999999999988753

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.86  E-value=1.1e-20  Score=191.97  Aligned_cols=220  Identities=16%  Similarity=0.162  Sum_probs=159.8

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCC-c--EEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          204 YGRYGNPTTVVVEEKMSALEGAE-S--TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~e-~--~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      |+.+..+...++++.+++++|.+ +  .+++++|++|+.+++.+++++||+|+++++.|.+..  +...+...|+++..+
T Consensus        45 ~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v  122 (396)
T 2ch1_A           45 FHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAER--AVEMSERYGADVRTI  122 (396)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEE
T ss_pred             CChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHH--HHHHHHHcCCceEEe
Confidence            44333456789999999999984 3  445566779999999999999999999999999853  112345668888777


Q ss_pred             CC-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEEC
Q 012296          281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHS  354 (466)
Q Consensus       281 d~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S  354 (466)
                      +.     .|+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+.. .....+++|+++.|
T Consensus       123 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s  202 (396)
T 2ch1_A          123 EGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTG  202 (396)
T ss_dssp             ECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECC
T ss_pred             cCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEc
Confidence            63     5899999999762389999999999999999999999999999999999999874321 12234568999999


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHH--------------HHHhC---------CCchHHHHHHHHHhhH-----HH
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNL--------------HHVLG---------GALNPNAAYLIIRGMK-----TL  406 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~--------------~~~~G---------~~lsp~~a~l~l~~L~-----tl  406 (466)
                      ++|+++++..  .|+++.++++++.++..              +..++         ++.+......+...++     .+
T Consensus       203 ~~K~~~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~  280 (396)
T 2ch1_A          203 AQKVLGAPPG--ITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGL  280 (396)
T ss_dssp             CC-CCCCCSS--CEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             CCccccCCCC--eEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhH
Confidence            9998887642  48999999888776431              00111         2223332222222232     24


Q ss_pred             HHHHHHHHHHHHHHHHHHHcC
Q 012296          407 HLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       407 ~~R~~~~~~na~~La~~L~~~  427 (466)
                      +.+.++..++++.+.+.|+++
T Consensus       281 ~~~~~~~~~~~~~l~~~L~~~  301 (396)
T 2ch1_A          281 ENQIKRRIECAQILYEGLGKM  301 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHC
Confidence            456677788889999998865

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.86  E-value=3.3e-20  Score=190.28  Aligned_cols=214  Identities=11%  Similarity=0.099  Sum_probs=155.2

Q ss_pred             hHHHHHHHHHhhhC------------C--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCce
Q 012296          211 TTVVVEEKMSALEG------------A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (466)
Q Consensus       211 ~~~~Lee~LA~l~g------------~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~  276 (466)
                      ...++++.++++++            .  ++++++++|++|+.+++.+++++||+|+++.+.|++....    +...|++
T Consensus        76 ~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~----~~~~g~~  151 (416)
T 1bw0_A           76 GSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETV----CKAYGIG  151 (416)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHH----HHHTTCE
T ss_pred             CCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHH----HHHcCcE
Confidence            45678888888877            2  4566666667999999999999999999999999986543    3456777


Q ss_pred             EEEeCC-------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc--c---
Q 012296          277 ATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN--Q---  341 (466)
Q Consensus       277 v~~vd~-------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~--~---  341 (466)
                      +..++.       .|+++|+++++++ +++|++++|+||||.+.+   +++|+++|+++|++||+|++|.....  .   
T Consensus       152 ~~~v~~~~~~~~~~d~~~l~~~l~~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~  230 (416)
T 1bw0_A          152 MHFYNCRPENDWEADLDEIRRLKDDK-TKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPN  230 (416)
T ss_dssp             EEEEEEEGGGTTEECHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTT
T ss_pred             EEEeecCcccCCCCCHHHHHHHhccC-CeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Confidence            666542       3799999999875 899999999999999998   89999999999999999999875321  1   


Q ss_pred             ----ccccc---CCcEEEECCccccCccccceeEEEEeCH--HHHHHHH----HHHHHhCCCchHHHHHHHHHhh-----
Q 012296          342 ----KALSL---GADLVLHSATKFIGGHNDVLAGSISGSG--KLVTQIR----NLHHVLGGALNPNAAYLIIRGM-----  403 (466)
Q Consensus       342 ----~~l~~---gaDivv~S~sK~lgg~gdv~gG~ivg~~--eli~~l~----~~~~~~G~~lsp~~a~l~l~~L-----  403 (466)
                          ....+   +.++++.|+||+++++|. +.|++++++  ++++.+.    ...... .+.++...+.+...+     
T Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~Gl-r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~  308 (416)
T 1bw0_A          231 ATFTSVADFETTVPRVILGGTAKNLVVPGW-RLGWLLYVDPHGNGPSFLEGLKRVGMLV-CGPCTVVQAALGEALLNTPQ  308 (416)
T ss_dssp             CCCCCTTSSCCSCCEEEEEESTTTTSCGGG-CCEEEEEECTTCSCHHHHHHHHHHHHHH-TCSCHHHHHHHHHHHHSSCH
T ss_pred             CCccCHHHccCCCcEEEEecchhhCCCCCc-eEEEEEeeCchhhHHHHHHHHHHHhccc-cCCCcHHHHHHHHHHhcccH
Confidence                11111   235889999999988773 467877654  3444333    322111 233444444433333     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 012296          404 KTLHLRVQQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       404 ~tl~~R~~~~~~na~~La~~L~~~p~V~  431 (466)
                      +.++...++..++++.+.+.|+++|++.
T Consensus       309 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~  336 (416)
T 1bw0_A          309 EHLDQIVAKIEESAMYLYNHIGECIGLA  336 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            3456667778889999999999887765

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.86  E-value=1e-20  Score=187.97  Aligned_cols=214  Identities=13%  Similarity=0.138  Sum_probs=156.2

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEe-CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC---
Q 012296          210 PTTVVVEEKMSALEGAE---STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e---~~l~~-sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---  282 (466)
                      +..+++++.+++++|.+   +.+++ ++|++|+.+++.++++  |+|+++++.|++. . +...+...|+++..++.   
T Consensus        33 ~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~~~~~-~-~~~~~~~~g~~~~~v~~~~~  108 (353)
T 2yrr_A           33 RVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR--GPVLVLVNGAFSQ-R-VAEMAALHGLDPEVLDFPPG  108 (353)
T ss_dssp             HHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEEECSHHHH-H-HHHHHHHTTCCEEEEECCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEEcCCCchH-H-HHHHHHHcCCceEEEeCCCC
Confidence            44788999999999973   44555 5667999999988876  8999999999875 2 22344566888777763   


Q ss_pred             --CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECCcccc
Q 012296          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI  359 (466)
Q Consensus       283 --~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~sK~l  359 (466)
                        .|+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+.. .....++.|+++.|++|++
T Consensus       109 ~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~  188 (353)
T 2yrr_A          109 EPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCL  188 (353)
T ss_dssp             SCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTT
T ss_pred             CCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccc
Confidence              4799999999762389999999999999999999999999999999999999864322 2223357899999999987


Q ss_pred             CccccceeEEEEeCHHHHHHHHH----------H-----HHHhCCCchHHHHHHHHHhhHH-----HHHHHHHHHHHHHH
Q 012296          360 GGHNDVLAGSISGSGKLVTQIRN----------L-----HHVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALR  419 (466)
Q Consensus       360 gg~gdv~gG~ivg~~eli~~l~~----------~-----~~~~G~~lsp~~a~l~l~~L~t-----l~~R~~~~~~na~~  419 (466)
                      +++.+  .|+++++++++++++.          .     .....++.+......+...++.     ++..+++..++++.
T Consensus       189 ~~~~g--~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~  266 (353)
T 2yrr_A          189 SAPPG--LAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAW  266 (353)
T ss_dssp             CCCSS--CEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             cCCCc--eEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            66432  4999999998876641          0     0112233344333322223322     44566777888999


Q ss_pred             HHHHHHcCCCe
Q 012296          420 MAKILEAHPKV  430 (466)
Q Consensus       420 La~~L~~~p~V  430 (466)
                      +.+.|++. ++
T Consensus       267 l~~~L~~~-g~  276 (353)
T 2yrr_A          267 VLEELKAR-GF  276 (353)
T ss_dssp             HHHHHHHT-TC
T ss_pred             HHHHHHHC-CC
Confidence            99999876 44

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.86  E-value=1.5e-20  Score=193.94  Aligned_cols=217  Identities=15%  Similarity=0.197  Sum_probs=157.0

Q ss_pred             cCCCchh-HHHHHHHHHhhhC--------C-CcEEEeCCH-HHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccC
Q 012296          205 GRYGNPT-TVVVEEKMSALEG--------A-ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM  273 (466)
Q Consensus       205 ~R~~np~-~~~Lee~LA~l~g--------~-e~~l~~sSG-s~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~  273 (466)
                      .+|+++. ..+|++.++++++        . .+.+++++| ++++.+++.+++++||+|++++|.|++....   .....
T Consensus        77 ~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~---~~~~~  153 (428)
T 1iay_A           77 ANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRD---LRWRT  153 (428)
T ss_dssp             HHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHH---TTTTT
T ss_pred             cCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHH---HHHhc
Confidence            4555554 6788999998875        3 234445555 5999999999999999999999999985432   23356


Q ss_pred             CceEEEeCC-------CCHHHHHHhhcC-----CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCC
Q 012296          274 GITATVIDP-------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP  338 (466)
Q Consensus       274 Gi~v~~vd~-------~Dle~Le~ai~~-----~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~  338 (466)
                      |+++..++.       .|+++|++++++     .++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|...
T Consensus       154 g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~  233 (428)
T 1iay_A          154 GVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAAT  233 (428)
T ss_dssp             CCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGG
T ss_pred             CCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEecccccc
Confidence            888877753       278999998863     24899999999999999999   899999999999999999998752


Q ss_pred             Ccc-----c--ccccC-------Cc--EEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 012296          339 LNQ-----K--ALSLG-------AD--LVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIR  401 (466)
Q Consensus       339 ~~~-----~--~l~~g-------aD--ivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~lsp~~a~l~l~  401 (466)
                      ...     .  .+..+       .|  +++.|+||+++.+| .+.|++++ ++++++.++.....++  .++....++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~G-lr~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~  310 (428)
T 1iay_A          234 VFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG-FRVGIIYSFNDDVVNCARKMSSFGL--VSTQTQYFLAA  310 (428)
T ss_dssp             CCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG-GCEEEEEESCHHHHHHHHHHHTTSC--CCHHHHHHHHH
T ss_pred             ccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCC-ceEEEEEeCCHHHHHHHHHHHhccc--CCHHHHHHHHH
Confidence            211     1  11112       57  89999999998776 35688887 6888888876554332  23443333333


Q ss_pred             hhH-------HHHHHHHHHHHHHHHHHHHHHcC
Q 012296          402 GMK-------TLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       402 ~L~-------tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      .++       .+....++..++++.+.+.|+++
T Consensus       311 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  343 (428)
T 1iay_A          311 MLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV  343 (428)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            332       23445566778888999999876

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.86  E-value=3.8e-20  Score=188.82  Aligned_cols=227  Identities=12%  Similarity=0.107  Sum_probs=161.8

Q ss_pred             CccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc-------cCCCEEEEcCCCCcchHHHH-------
Q 012296          201 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV-------PAGGHIVTTTDCYRKTRIFI-------  266 (466)
Q Consensus       201 ~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all-------~~Gd~Vlv~~~~y~~t~~~~-------  266 (466)
                      .+.|+++.++..++++++++++++.++++++++|++|+..++..+.       .++|+|++.++.|++.....       
T Consensus        69 ~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~  148 (395)
T 3nx3_A           69 LHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANE  148 (395)
T ss_dssp             SCCCTTSBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCH
T ss_pred             cccccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCc
Confidence            4556777899999999999999998889999999999999988765       34799999999998743221       


Q ss_pred             --HhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCC-
Q 012296          267 --ETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL-  339 (466)
Q Consensus       267 --~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~-  339 (466)
                        ...+...+..+..++..|+++|+++++++ +++|+++.++|++|.+.+    +++|.++|++||++||+||++.... 
T Consensus       149 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~-~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~  227 (395)
T 3nx3_A          149 KYQKPFKPLISGVKFAKYNDISSVEKLVNEK-TCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGR  227 (395)
T ss_dssp             HHHGGGCSCCSCEEEECTTCHHHHHTTCCTT-EEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred             ccccccCCCCCCcEEeCCCCHHHHHHhccCC-eEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCc
Confidence              12223344567777878999999999874 999999999999998877    9999999999999999999976321 


Q ss_pred             -----cccccccCCcEEEECCccccCccccceeEEEEeCHHH-HHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHH
Q 012296          340 -----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQ  411 (466)
Q Consensus       340 -----~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~el-i~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~--~R~~  411 (466)
                           .........|++  +++|.+++ | ...|++++++++ ++.++..........++..+.+++..++.+.  ..++
T Consensus       228 ~g~~~~~~~~~~~~d~~--t~sK~~~~-G-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~  303 (395)
T 3nx3_A          228 SGKFFAYEHAQILPDIM--TSAKALGC-G-LSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILE  303 (395)
T ss_dssp             TSSSSGGGGGTCCCSEE--EECGGGTT-T-SCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHH
T ss_pred             CCcchhHHhcCCCCCEE--EecccccC-C-CceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHH
Confidence                 122223345665  57799987 4 467899999998 7776543222223446666665555555432  2344


Q ss_pred             HHHHHHHHHHHHHH----cCCCeEE
Q 012296          412 QQNSTALRMAKILE----AHPKVKR  432 (466)
Q Consensus       412 ~~~~na~~La~~L~----~~p~V~~  432 (466)
                      +..++.+++.+.|+    ++|.+..
T Consensus       304 ~~~~~~~~~~~~l~~~~~~~~~~~~  328 (395)
T 3nx3_A          304 NVNKLTPYLEQSLDELINEFDFCKK  328 (395)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeEE
Confidence            44455555554444    4565543

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.86  E-value=1.5e-20  Score=191.95  Aligned_cols=214  Identities=17%  Similarity=0.233  Sum_probs=156.3

Q ss_pred             hHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          211 TTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       211 ~~~~Lee~LA~l~----g~----e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      ...++++.+++++    |.    ++.+++++|++|+.+++.+++++||+|+++.++|.+....    +...|.++..++.
T Consensus        76 ~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~~  151 (407)
T 2zc0_A           76 GIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLA----FEQLGAKIEGVPV  151 (407)
T ss_dssp             CCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHTTTCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHH----HHHcCCEEEEccc
Confidence            4567888888887    72    3455555557999999999999999999999999986543    3456777766653


Q ss_pred             ----CCHHHHHHhhc----C-CCceEE-EEeCCCCCCcccccHH---HHHHHHHhcCCEEEEeCCCCCCCcc-----ccc
Q 012296          283 ----ADMEGLEAALN----N-NNVSLF-FTESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLNQ-----KAL  344 (466)
Q Consensus       283 ----~Dle~Le~ai~----~-~~tklV-~lesP~NPtG~v~dl~---~Ia~la~~~gillIvDea~a~~~~~-----~~l  344 (466)
                          .|+++|+++++    + .++++| ++++|+||||.+.+++   +|+++|+++|+++|+|++|+.....     ...
T Consensus       152 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~  231 (407)
T 2zc0_A          152 DNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLK  231 (407)
T ss_dssp             ETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGG
T ss_pred             CCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChh
Confidence                37999999987    5 248887 4789999999999876   9999999999999999998754321     111


Q ss_pred             cc---CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH-------HHHHHHHHH
Q 012296          345 SL---GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-------LHLRVQQQN  414 (466)
Q Consensus       345 ~~---gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~t-------l~~R~~~~~  414 (466)
                      .+   +.++++.|+||+++ +| .++|++++++++++.++......+...++....++...++.       +....++..
T Consensus       232 ~~~~~~~~i~~~s~sK~~~-~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  309 (407)
T 2zc0_A          232 ALDNEGRVIVAGTLSKVLG-TG-FRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYK  309 (407)
T ss_dssp             GGCSSCCEEEEEESTTTTC-TT-SCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHH
T ss_pred             hcCCCCCEEEEcccccccC-CC-cceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            22   45689999999999 55 45899999999999888766554433445444443333332       333455667


Q ss_pred             HHHHHHHHHHHc-CCCe
Q 012296          415 STALRMAKILEA-HPKV  430 (466)
Q Consensus       415 ~na~~La~~L~~-~p~V  430 (466)
                      ++++.+.+.|++ .|++
T Consensus       310 ~~~~~l~~~L~~~~~~~  326 (407)
T 2zc0_A          310 EKRDIMLKALENHLPNA  326 (407)
T ss_dssp             HHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            788888888876 3543

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.86  E-value=2.1e-20  Score=191.23  Aligned_cols=218  Identities=16%  Similarity=0.177  Sum_probs=156.6

Q ss_pred             chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc------cCCCE-EEEcCCCCcchHHHHHhhcccC--CceE
Q 012296          209 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV------PAGGH-IVTTTDCYRKTRIFIETVLPKM--GITA  277 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all------~~Gd~-Vlv~~~~y~~t~~~~~~~l~~~--Gi~v  277 (466)
                      .+..+++++.+++++|.+  +++++++|++++.+++.+++      ++||+ |+++.+.|+++...+.......  |.++
T Consensus        70 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~  149 (416)
T 1qz9_A           70 RDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTL  149 (416)
T ss_dssp             GGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEE
T ss_pred             HHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceE
Confidence            366789999999999974  56666677789988888776      88987 5555667776554443322333  8888


Q ss_pred             EEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECCc
Q 012296          278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSAT  356 (466)
Q Consensus       278 ~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~s  356 (466)
                      .+++.  +++|+++++++ +++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .....+++|+++.|++
T Consensus       150 ~~v~~--~~~l~~~i~~~-~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~  226 (416)
T 1qz9_A          150 RLVDS--PEELPQAIDQD-TAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTY  226 (416)
T ss_dssp             EEESS--GGGHHHHCSTT-EEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSS
T ss_pred             EEeCc--HHHHHHHhCCC-ceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCc
Confidence            88886  89999999874 99999999999999999999999999999999999999875432 2222457899999999


Q ss_pred             cccCcccccee-EEEEeCHHHHHHHHHHH-----------------------HHhCCCchHHHHHHHHHhhH-----HHH
Q 012296          357 KFIGGHNDVLA-GSISGSGKLVTQIRNLH-----------------------HVLGGALNPNAAYLIIRGMK-----TLH  407 (466)
Q Consensus       357 K~lgg~gdv~g-G~ivg~~eli~~l~~~~-----------------------~~~G~~lsp~~a~l~l~~L~-----tl~  407 (466)
                      |+++++.  .+ |+++++++++++++...                       ....++.+......+...++     .++
T Consensus       227 K~l~~g~--~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~  304 (416)
T 1qz9_A          227 KYLNGGP--GSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMA  304 (416)
T ss_dssp             STTCCCT--TCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHH
T ss_pred             ccCCCCC--CCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHH
Confidence            9985432  24 89999888776554321                       11112333333322222232     245


Q ss_pred             HHHHHHHHHHHHHHHHHHcC-C--CeE
Q 012296          408 LRVQQQNSTALRMAKILEAH-P--KVK  431 (466)
Q Consensus       408 ~R~~~~~~na~~La~~L~~~-p--~V~  431 (466)
                      ...++..++++.+.+.|+++ |  ++.
T Consensus       305 ~~~~~~~~~~~~l~~~L~~~~~~~g~~  331 (416)
T 1qz9_A          305 SLRRKSLALTDLFIELVEQRCAAHELT  331 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCCE
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCeE
Confidence            56777788889999999875 5  554

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.86  E-value=4.2e-20  Score=188.18  Aligned_cols=208  Identities=15%  Similarity=0.190  Sum_probs=149.9

Q ss_pred             HHHHHHHHhh----hC----CCcEEEeCCHHHHHHHHHHHHccCC-CEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC
Q 012296          213 VVVEEKMSAL----EG----AESTVIMASGMSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  283 (466)
Q Consensus       213 ~~Lee~LA~l----~g----~e~~l~~sSGs~Ai~~al~all~~G-d~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~  283 (466)
                      .++++.++++    +|    .++.+++++|++|+.+++.+++++| |+|+++.|.|.+....    +...|.++..++..
T Consensus        79 ~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~----~~~~g~~~~~v~~~  154 (398)
T 3ele_A           79 VETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVF----VNAAGARLVEVPAD  154 (398)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHH----HHHTTCEEEEECCC
T ss_pred             HHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHH----HHHcCCEEEEEecC
Confidence            4555555554    44    2466777777899999999999999 9999999999986543    34568888877643


Q ss_pred             ------CHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHh------cCCEEEEeCCCCCCCcc------c
Q 012296          284 ------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHK------KGAIVCIDGTFATPLNQ------K  342 (466)
Q Consensus       284 ------Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~------~gillIvDea~a~~~~~------~  342 (466)
                            |+++|+++++++ +++|++++|+||||.+.+   +++|+++|++      +|+++|+|++|......      .
T Consensus       155 ~~~~~~d~~~l~~~l~~~-~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~  233 (398)
T 3ele_A          155 TEHFQIDFDALEERINAH-TRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFV  233 (398)
T ss_dssp             TTTSSCCHHHHHHTCCTT-EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCG
T ss_pred             CcCCcCCHHHHHHHhCcC-CCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCCh
Confidence                  899999999875 999999999999999998   6777789999      99999999998753221      1


Q ss_pred             ccccCCcEEEECCccccCccccceeEEEEeCHHH------HHHHHHHHHHhC-CCchHHHHHHHHHhhHHHHHHHHHHHH
Q 012296          343 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL------VTQIRNLHHVLG-GALNPNAAYLIIRGMKTLHLRVQQQNS  415 (466)
Q Consensus       343 ~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~el------i~~l~~~~~~~G-~~lsp~~a~l~l~~L~tl~~R~~~~~~  415 (466)
                      ....+.++++.|+||.++.+| .+.|++++++++      .+.+.......+ ...++..++.+...++... ..+++.+
T Consensus       234 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~  311 (398)
T 3ele_A          234 TKYYDNTLVCYSYSKSLSLPG-ERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG-DINAYKE  311 (398)
T ss_dssp             GGTCSSEEEEEESTTTSSCTT-TCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC-CHHHHHH
T ss_pred             HhhcCCeEEEEehhhcCCCcc-ceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH-HHHHHHH
Confidence            122356799999999998776 457888888763      334444333333 3344455554444443322 3456677


Q ss_pred             HHHHHHHHHHcC
Q 012296          416 TALRMAKILEAH  427 (466)
Q Consensus       416 na~~La~~L~~~  427 (466)
                      +++.+.+.|+++
T Consensus       312 ~~~~l~~~L~~~  323 (398)
T 3ele_A          312 NRDLLYEGLTRI  323 (398)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            888888888764

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.85  E-value=2.7e-20  Score=187.71  Aligned_cols=214  Identities=14%  Similarity=0.102  Sum_probs=156.3

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEE-eCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC---
Q 012296          210 PTTVVVEEKMSALEGAE---STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e---~~l~-~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---  282 (466)
                      +..+++++++++++|.+   +.++ +++|++|+.+++.+++++||+|++.++.|.+.. .. ..+...|+++..++.   
T Consensus        52 ~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~-~~-~~~~~~g~~~~~v~~~~~  129 (376)
T 3f0h_A           52 STMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHR-FV-QLCEIHEIPYVALKLEHG  129 (376)
T ss_dssp             HHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHH-HH-HHHHHTTCCEEEEECCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHH-HH-HHHHHcCCceEEEeCCCC
Confidence            56788999999999874   4555 356689999999999999999999998777633 22 334556777766642   


Q ss_pred             --CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECCcccc
Q 012296          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI  359 (466)
Q Consensus       283 --~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~sK~l  359 (466)
                        .|+++|+++++++ +++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+.. ......|+|+++.|++|++
T Consensus       130 ~~~d~~~l~~~~~~~-~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l  208 (376)
T 3f0h_A          130 KKLTKEKLYEYDNQN-FTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVL  208 (376)
T ss_dssp             CCCCHHHHHTTTTSC-CCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTT
T ss_pred             CCCCHHHHHHhhccC-ceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcccc
Confidence              4799999988774 99999999999999999999999999999999999999775432 2333457899999999999


Q ss_pred             CccccceeEEEEeCHHHHHHHHHHHH------------H-----hCCCchHHHHHHHHHhhHH------HHHHHHHHHHH
Q 012296          360 GGHNDVLAGSISGSGKLVTQIRNLHH------------V-----LGGALNPNAAYLIIRGMKT------LHLRVQQQNST  416 (466)
Q Consensus       360 gg~gdv~gG~ivg~~eli~~l~~~~~------------~-----~G~~lsp~~a~l~l~~L~t------l~~R~~~~~~n  416 (466)
                      +++.  ..|+++.++++++++.....            .     ...+.+....+.+...++.      ++...++..++
T Consensus       209 ~~~~--G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~  286 (376)
T 3f0h_A          209 ACPP--GISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQ  286 (376)
T ss_dssp             CCCS--SCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             cCCC--ceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9543  25888999998887763210            0     0112222111222222222      45566667788


Q ss_pred             HHHHHHHHHcCC
Q 012296          417 ALRMAKILEAHP  428 (466)
Q Consensus       417 a~~La~~L~~~p  428 (466)
                      ++.+.+.|++++
T Consensus       287 ~~~l~~~L~~~~  298 (376)
T 3f0h_A          287 AADFRAKIKDLP  298 (376)
T ss_dssp             HHHHHHHTTTSS
T ss_pred             HHHHHHHHHHcC
Confidence            888888888764

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.85  E-value=7.7e-20  Score=182.44  Aligned_cols=220  Identities=16%  Similarity=0.157  Sum_probs=158.5

Q ss_pred             CchhHHHHHHHHHhhhCCCc-EEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccC--CceEEEeCCC-
Q 012296          208 GNPTTVVVEEKMSALEGAES-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM--GITATVIDPA-  283 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~-~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~--Gi~v~~vd~~-  283 (466)
                      ..+..+++++++++++|.+. .+++++|++|+.+++.+++++||+|+++.+.|.+++..  ..+...  |.++..++.. 
T Consensus        41 ~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  118 (356)
T 1v72_A           41 TDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDEC--GAPEFFSNGAKLMTVDGPA  118 (356)
T ss_dssp             CSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSST--THHHHHTTSCEEEECCCGG
T ss_pred             cchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhcCCCCEEEEcCccchhhhhc--hHHHHHhCCcEEEEecCCC
Confidence            46788999999999999655 57778999999999999899999999999988765432  002334  7777777643 


Q ss_pred             ---CHHHHHH-hhcCC------CceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCC------Cccccc
Q 012296          284 ---DMEGLEA-ALNNN------NVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATP------LNQKAL  344 (466)
Q Consensus       284 ---Dle~Le~-ai~~~------~tklV~lesP~NPtG~v~---dl~~Ia~la~~~gillIvDea~a~~------~~~~~l  344 (466)
                         |+++|++ ++++.      ++++|++++|+| +|.+.   ++++|.++|++||+++|+|++|..+      ......
T Consensus       119 ~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~  197 (356)
T 1v72_A          119 AKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEM  197 (356)
T ss_dssp             GCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTT
T ss_pred             CeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHh
Confidence               7999999 88751      489999999987 99954   5889999999999999999997531      111111


Q ss_pred             --ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHhhH--HHHHHHHHHHHHHH
Q 012296          345 --SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMK--TLHLRVQQQNSTAL  418 (466)
Q Consensus       345 --~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~l--sp~~a~l~l~~L~--tl~~R~~~~~~na~  418 (466)
                        ..+.|+++.|+||+ +++  ..+|+++++++++++++..+...|...  ....+...++.++  .....+++..++++
T Consensus       198 ~~~~~~d~~~~s~sK~-g~~--~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  274 (356)
T 1v72_A          198 TWKAGVDALSFGATKN-GVL--AAEAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQ  274 (356)
T ss_dssp             TGGGTCCEEEECCGGG-TCS--SCEEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred             hhhhcCCEEEEecccC-CCc--CccEEEEECHHHHhhHHHHhhccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence              23689999999999 443  223799889999888776554444321  2222222223232  12334666788899


Q ss_pred             HHHHHHHcCCCeEEE
Q 012296          419 RMAKILEAHPKVKRV  433 (466)
Q Consensus       419 ~La~~L~~~p~V~~V  433 (466)
                      .+.+.|+++++++.+
T Consensus       275 ~l~~~L~~~~g~~~~  289 (356)
T 1v72_A          275 RLAQGLEGLGGVEVL  289 (356)
T ss_dssp             HHHHHHTTCTTEEEE
T ss_pred             HHHHHHhhCCCcEEc
Confidence            999999988887644

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.85  E-value=4.4e-20  Score=191.11  Aligned_cols=211  Identities=15%  Similarity=0.163  Sum_probs=152.8

Q ss_pred             HHHHHHHHHhhhC----------CCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcc-cCCceEEEe
Q 012296          212 TVVVEEKMSALEG----------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP-KMGITATVI  280 (466)
Q Consensus       212 ~~~Lee~LA~l~g----------~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~-~~Gi~v~~v  280 (466)
                      ..+|++.|+++++          .++++++++|++|+.+++.+++++||+|+++.+.|.+....    +. ..|.++..+
T Consensus        88 ~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~~g~~~~~~  163 (435)
T 3piu_A           88 LPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRD----LKWRTGVEIVPI  163 (435)
T ss_dssp             CHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----TTTTTCCEEEEE
T ss_pred             cHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHH----HHHhcCCEEEEe
Confidence            5788999998876          35677777778999999999999999999999999986532    33 568887777


Q ss_pred             CC-------CCHHHHHHhhcC-----CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc-----
Q 012296          281 DP-------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----  340 (466)
Q Consensus       281 d~-------~Dle~Le~ai~~-----~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~-----  340 (466)
                      +.       .|+++|++++++     .++++|++++|+||||.+.+   +++|+++|++||+++|+|++|+....     
T Consensus       164 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~  243 (435)
T 3piu_A          164 HCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSF  243 (435)
T ss_dssp             ECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCC
T ss_pred             eCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Confidence            54       378999999875     14899999999999999986   47888889999999999999765221     


Q ss_pred             cccc----c---------cCCcEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCCc-hHHHHHHHHHhhH-
Q 012296          341 QKAL----S---------LGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGAL-NPNAAYLIIRGMK-  404 (466)
Q Consensus       341 ~~~l----~---------~gaDivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~l-sp~~a~l~l~~L~-  404 (466)
                      ....    +         .+.++++.|++|.+|.+| .+.|++++ ++++.+.++......+... ....+..++...+ 
T Consensus       244 ~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  322 (435)
T 3piu_A          244 ISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKL  322 (435)
T ss_dssp             CCHHHHHHC-------CGGGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHH
T ss_pred             cCHHHhccccccccccCCCCCEEEEEeeecccCCCc-eeEEEEEeCCHHHHHHHHHHhhcCCCCHHHHHHHHHHhcChHH
Confidence            1111    1         123388999999998666 35788888 5677777776554443322 1122222233222 


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHcC
Q 012296          405 ---TLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       405 ---tl~~R~~~~~~na~~La~~L~~~  427 (466)
                         .+..+.++..++++.+.+.|+++
T Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~L~~~  348 (435)
T 3piu_A          323 TKNYIAENHKRLKQRQKKLVSGLQKS  348 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               23445566778888999999876

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.85  E-value=1.7e-19  Score=184.18  Aligned_cols=211  Identities=12%  Similarity=0.051  Sum_probs=144.5

Q ss_pred             HHHHHHHHHhhhC--------CCcEEE--eCCHHHHHHHHHHHHc---cCCCEEEEcCCCCcchHHHHHhhcccCCceEE
Q 012296          212 TVVVEEKMSALEG--------AESTVI--MASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (466)
Q Consensus       212 ~~~Lee~LA~l~g--------~e~~l~--~sSGs~Ai~~al~all---~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~  278 (466)
                      ..++++.++++++        .++.++  +++|++|+.+++..+.   ++||+|++++|+|......+    +..|.++.
T Consensus        73 ~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~----~~~g~~~~  148 (401)
T 7aat_A           73 LADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIF----RDAGLQLQ  148 (401)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHH----HHTTCEEE
T ss_pred             CHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHH----HHcCCeeE
Confidence            4567777777664        345544  5566699998876654   89999999999999876444    34577766


Q ss_pred             EeCC-------CCHHHHHHhhcC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcccc---
Q 012296          279 VIDP-------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA---  343 (466)
Q Consensus       279 ~vd~-------~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~~---  343 (466)
                      .++.       .|++++++.+++  .++++|++++|+||||.+.+   +++|+++|++||+++|+|++|........   
T Consensus       149 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~  228 (401)
T 7aat_A          149 AYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRD  228 (401)
T ss_dssp             EEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHH
T ss_pred             eeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCcccc
Confidence            6542       267766666652  24899999999999998875   77889999999999999999876433211   


Q ss_pred             --------cccCCcEEEECCccccCccccceeEEEEe---CHH----HHHHHHHHHHHhCCCchHHHHHHHHHh------
Q 012296          344 --------LSLGADLVLHSATKFIGGHNDVLAGSISG---SGK----LVTQIRNLHHVLGGALNPNAAYLIIRG------  402 (466)
Q Consensus       344 --------l~~gaDivv~S~sK~lgg~gdv~gG~ivg---~~e----li~~l~~~~~~~G~~lsp~~a~l~l~~------  402 (466)
                              ......+++.|+||.++.+|.+ .|+++.   +++    +.+.++..........+...+.++...      
T Consensus       229 ~~~~~~~~~~~~~~i~~~S~sK~~~~~G~R-iG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  307 (401)
T 7aat_A          229 AWALRHFIEQGIDVVLSQSYAKNMGLYGER-AGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPEL  307 (401)
T ss_dssp             THHHHHHHHTTCCCEEEEECTTTSCCGGGC-EEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHhcCCcEEEEecCCcccccccCc-eEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHH
Confidence                    1224568999999999988865 566554   666    445555444433333333333333221      


Q ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          403 ----MKTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       403 ----L~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                          .+.+....++..++++.+.+.|+++
T Consensus       308 ~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  336 (401)
T 7aat_A          308 RKEWLVEVKGMADRIISMRTQLVSNLKKE  336 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                2335555667778888999999876

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.85  E-value=2.4e-20  Score=186.28  Aligned_cols=213  Identities=16%  Similarity=0.162  Sum_probs=154.9

Q ss_pred             hhHHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHHccCCCEEEEcC-CCCcchHHHHHhhcccCCceEEEeCC--
Q 012296          210 PTTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIETVLPKMGITATVIDP--  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e----~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~-~~y~~t~~~~~~~l~~~Gi~v~~vd~--  282 (466)
                      +..+++++.+++++|..    +++++++|++|+.+++.+++++||+|++.+ +.|+..+   ...+...|+++..++.  
T Consensus        37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~---~~~~~~~g~~~~~v~~~~  113 (366)
T 1m32_A           37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARM---VEMAGLMGIAHHAYDCGE  113 (366)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHH---HHHHHHHTCCEEEEECCT
T ss_pred             HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHH---HHHHHHhCCceEEEeCCC
Confidence            67889999999999852    467778888999999999999999988776 4454422   1233445777766653  


Q ss_pred             ---CCHHHHHHhhcCC-CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECCcc
Q 012296          283 ---ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK  357 (466)
Q Consensus       283 ---~Dle~Le~ai~~~-~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~sK  357 (466)
                         .|+++|+++++++ ++++|++.+|+||||.+.|+++|.++|+++|+++|+|++++.+.. .....+++|+++.|+||
T Consensus       114 ~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K  193 (366)
T 1m32_A          114 VARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANK  193 (366)
T ss_dssp             TSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSS
T ss_pred             CCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcc
Confidence               4799999999753 478999999999999999999999999999999999999875432 22223578999999999


Q ss_pred             ccCccccceeEEEEeCHHHHHHHHHHH-----------H---Hh-C---CCchHHHHHHHHHhhHH------HHHHHHHH
Q 012296          358 FIGGHNDVLAGSISGSGKLVTQIRNLH-----------H---VL-G---GALNPNAAYLIIRGMKT------LHLRVQQQ  413 (466)
Q Consensus       358 ~lgg~gdv~gG~ivg~~eli~~l~~~~-----------~---~~-G---~~lsp~~a~l~l~~L~t------l~~R~~~~  413 (466)
                      +++++.  ..|+++++++++++++...           .   .. +   .+.++...+.+...++.      +....++.
T Consensus       194 ~~~~~~--g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~  271 (366)
T 1m32_A          194 CIQGVP--GFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRY  271 (366)
T ss_dssp             TTCCCS--SEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cccCCC--ceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHH
Confidence            886553  2499999998876553210           0   00 1   23444433333333332      34566777


Q ss_pred             HHHHHHHHHHHHcC
Q 012296          414 NSTALRMAKILEAH  427 (466)
Q Consensus       414 ~~na~~La~~L~~~  427 (466)
                      .++++.+.+.|+++
T Consensus       272 ~~~~~~l~~~L~~~  285 (366)
T 1m32_A          272 QQNQRSLVAGMRAL  285 (366)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHC
Confidence            88899999999875

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.85  E-value=1.7e-19  Score=191.53  Aligned_cols=215  Identities=14%  Similarity=0.122  Sum_probs=154.9

Q ss_pred             HHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHHc-cCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC-
Q 012296          212 TVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-  281 (466)
Q Consensus       212 ~~~Lee~LA~l~----g----~e~~l~~sSGs~Ai~~al~all-~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd-  281 (466)
                      ...+++.+++++    |    .++++++++|++++.+++.+++ .+||+|+++.|.|......+    ...|.++..++ 
T Consensus       136 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~  211 (500)
T 3tcm_A          136 IHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASI----ALHGGALVPYYL  211 (500)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHH----HHTTCEEEEEEC
T ss_pred             hHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHH----HHcCCEEEEEec
Confidence            445666666654    3    2567777777899999999998 79999999999999765443    44577766664 


Q ss_pred             ------CCCHHHHHHhhcCC-----CceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc-----
Q 012296          282 ------PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-----  342 (466)
Q Consensus       282 ------~~Dle~Le~ai~~~-----~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~-----  342 (466)
                            ..|+++|++++++.     ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|.......     
T Consensus       212 ~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~  291 (500)
T 3tcm_A          212 NESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFH  291 (500)
T ss_dssp             BTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCC
T ss_pred             ccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCC
Confidence                  44899999998751     4899999999999999986   5677777999999999999987643311     


Q ss_pred             cc-----cc-----C-CcEEEECCcccc-CccccceeEEEEe---CHHHHHHHHHHHHHhCCCchHHHHHHHHH------
Q 012296          343 AL-----SL-----G-ADLVLHSATKFI-GGHNDVLAGSISG---SGKLVTQIRNLHHVLGGALNPNAAYLIIR------  401 (466)
Q Consensus       343 ~l-----~~-----g-aDivv~S~sK~l-gg~gdv~gG~ivg---~~eli~~l~~~~~~~G~~lsp~~a~l~l~------  401 (466)
                      ++     .+     . ..++++|+||.| |.+| .++|++++   ++++++.++...... .+.+.....++..      
T Consensus       292 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~q~~~~~~l~~~~  369 (500)
T 3tcm_A          292 SFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECG-KRGGYFEITGFSAPVREQIYKIASVN-LCSNITGQILASLVMNPPK  369 (500)
T ss_dssp             CHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGG-GCCEEEEEESCCTTHHHHHHHHHHTT-CCCCHHHHHHHHHHHSCCC
T ss_pred             cHHHHHHHhccccCCeEEEEEecCCccCCCCCc-cceEEEEEeCCCHHHHHHHHHHHhcc-cCCCHHHHHHHHHHhcCcc
Confidence            10     11     1 137788999999 5555 45888887   889998888766432 2333333322222      


Q ss_pred             --------hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 012296          402 --------GMKTLHLRVQQQNSTALRMAKILEAHPKVKR  432 (466)
Q Consensus       402 --------~L~tl~~R~~~~~~na~~La~~L~~~p~V~~  432 (466)
                              ..+.+..+.+++.++++.+.+.|+++|++..
T Consensus       370 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~  408 (500)
T 3tcm_A          370 ASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITC  408 (500)
T ss_dssp             SSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence                    2244556667788899999999999988754

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.85  E-value=1.4e-19  Score=182.50  Aligned_cols=215  Identities=13%  Similarity=0.160  Sum_probs=153.9

Q ss_pred             hHHHHHHHHHhhhCC------CcEEEeCCHHHHHHHHHHHHc---cCCCEEEEcCC-CCcchHHHHHhhcccCCceEEEe
Q 012296          211 TTVVVEEKMSALEGA------ESTVIMASGMSASTVMLLALV---PAGGHIVTTTD-CYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       211 ~~~~Lee~LA~l~g~------e~~l~~sSGs~Ai~~al~all---~~Gd~Vlv~~~-~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      ...++++.++++++.      ++.+++++|++|+.+++.++.   ++||+|++..+ .|+...   ...+...|.++..+
T Consensus        39 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~---~~~~~~~g~~~~~v  115 (385)
T 2bkw_A           39 IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRF---ADCLRSYGAQVDVV  115 (385)
T ss_dssp             HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHH---HHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHH---HHHHHHcCCceEEE
Confidence            356688888888775      345566677899999999997   89999988744 454432   13345568888888


Q ss_pred             CC------CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhc--CCEEEEeCCCCCCCc-ccccccCCcEE
Q 012296          281 DP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLN-QKALSLGADLV  351 (466)
Q Consensus       281 d~------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~--gillIvDea~a~~~~-~~~l~~gaDiv  351 (466)
                      +.      .|+++|++++++.++++|++++|+||||.+.|+++|.++|+++  |+++|+|++++.+.. .....+++|++
T Consensus       116 ~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~  195 (385)
T 2bkw_A          116 RPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFA  195 (385)
T ss_dssp             CCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEE
T ss_pred             ecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEE
Confidence            76      4799999999763489999999999999999999999999999  999999999875432 22334578999


Q ss_pred             EECCccccCccccceeEEEEeCHHHHH-HHH------------------HH--HHHhC-----CCchHHHHHHHHHhhHH
Q 012296          352 LHSATKFIGGHNDVLAGSISGSGKLVT-QIR------------------NL--HHVLG-----GALNPNAAYLIIRGMKT  405 (466)
Q Consensus       352 v~S~sK~lgg~gdv~gG~ivg~~eli~-~l~------------------~~--~~~~G-----~~lsp~~a~l~l~~L~t  405 (466)
                      +.|+||+++++..  .|++++++++++ +++                  ..  ....+     ++.+......+...++.
T Consensus       196 ~~s~~K~~~~~~G--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~  273 (385)
T 2bkw_A          196 LTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE  273 (385)
T ss_dssp             EEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH
T ss_pred             EecCccccccCCc--ceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHH
Confidence            9999998876432  388899988776 542                  11  11111     23344333333333332


Q ss_pred             -----HHHHHHHHHHHHHHHHHHH-HcCCCeE
Q 012296          406 -----LHLRVQQQNSTALRMAKIL-EAHPKVK  431 (466)
Q Consensus       406 -----l~~R~~~~~~na~~La~~L-~~~p~V~  431 (466)
                           ++.+.++..++++.+.+.| ++. ++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~  304 (385)
T 2bkw_A          274 ILEEGLHKRWDLHREMSDWFKDSLVNGL-QLT  304 (385)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCE
T ss_pred             HHHccHHHHHHHHHHHHHHHHHHHHHhc-Cce
Confidence                 4455677788999999999 776 543

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.85  E-value=6e-20  Score=190.17  Aligned_cols=216  Identities=13%  Similarity=0.097  Sum_probs=151.1

Q ss_pred             hHHHHHHHHHhhh------CC--CcEEEeCCHHHHHHHHHHHHccCCC--------------EEEEc-CCCCcchHHHHH
Q 012296          211 TTVVVEEKMSALE------GA--ESTVIMASGMSASTVMLLALVPAGG--------------HIVTT-TDCYRKTRIFIE  267 (466)
Q Consensus       211 ~~~~Lee~LA~l~------g~--e~~l~~sSGs~Ai~~al~all~~Gd--------------~Vlv~-~~~y~~t~~~~~  267 (466)
                      ...+|++.+|+++      +.  ++++++++|++|+.+++.+++++||              +|+++ +|.|........
T Consensus        84 g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~  163 (444)
T 3if2_A           84 GDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHV  163 (444)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCS
T ss_pred             CCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhccc
Confidence            3567888888876      22  5777777888999999999999998              78876 899987542210


Q ss_pred             --hhcccCCceEEEeC----------CCCHHHHHHh---hcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEE
Q 012296          268 --TVLPKMGITATVID----------PADMEGLEAA---LNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIV  329 (466)
Q Consensus       268 --~~l~~~Gi~v~~vd----------~~Dle~Le~a---i~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gill  329 (466)
                        ..+...|..+..++          ..|+++|+++   +++ ++++|++++|+||||.+++   +++|+++|+++|+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~l  242 (444)
T 3if2_A          164 EGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEG-RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPL  242 (444)
T ss_dssp             SSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTT-CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCE
T ss_pred             ccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCC-CceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEE
Confidence              12344566665554          2489999988   566 4999999999999999998   888999999999999


Q ss_pred             EEeCCCCCCCc------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh
Q 012296          330 CIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM  403 (466)
Q Consensus       330 IvDea~a~~~~------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L  403 (466)
                      |+|++|+.+..      ..+...+.++++.|+||+ +++| .+.|++++++++++.++......+...++....++...+
T Consensus       243 i~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G-~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l  320 (444)
T 3if2_A          243 IIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLPG-MRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLV  320 (444)
T ss_dssp             EEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCGG-GCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred             EEECCCCCcccccccccccccCCCCEEEEechhhc-cCCC-CceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            99999875322      111224678999999997 5555 467999999999998887666544333333333322222


Q ss_pred             HH------HHH-HHHHHHHHHHHHHHHHHc-CCC
Q 012296          404 KT------LHL-RVQQQNSTALRMAKILEA-HPK  429 (466)
Q Consensus       404 ~t------l~~-R~~~~~~na~~La~~L~~-~p~  429 (466)
                      +.      +.. ..+...++.+.+.+.|++ .+.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  354 (444)
T 3if2_A          321 ANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGD  354 (444)
T ss_dssp             HTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             HcCchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            21      111 233455667777777765 444

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.85  E-value=1.1e-19  Score=185.27  Aligned_cols=213  Identities=16%  Similarity=0.184  Sum_probs=167.1

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-------ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-------VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-------l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      ..+..+++++.+++++|.++++++++|++|+..++.++       +++||+|+++.++|.++...+    ...|.++.++
T Consensus        32 ~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~----~~~g~~~~~~  107 (390)
T 3b8x_A           32 MGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPL----QQYGLRVKFV  107 (390)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHH----HHTTCEEEEE
T ss_pred             CChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEE
Confidence            46889999999999999999999999999999999998       789999999999999876544    3468888877


Q ss_pred             CCC------CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCC--cEEE
Q 012296          281 DPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA--DLVL  352 (466)
Q Consensus       281 d~~------Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~ga--Divv  352 (466)
                      +.+      |+++|+++++++ +++|+++   |++|...|+++|.++|+++|+++|+|++++.+...+....|.  |+.+
T Consensus       108 ~~~~~~~~~d~~~l~~~i~~~-~~~v~~~---~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~~~~~~~  183 (390)
T 3b8x_A          108 DIDINTLNIDIESLKEAVTDS-TKAILTV---NLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGT  183 (390)
T ss_dssp             CBCTTTCSBCHHHHHHHCCTT-EEEEEEE---CGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTEETTSSSSEEE
T ss_pred             ecCccccCcCHHHHHHHhCcC-CeEEEEE---CCccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCcccccccceEE
Confidence            643      799999999874 9999986   356778999999999999999999999998654444444555  5555


Q ss_pred             ECC--ccccCccccceeEEEEeCH-HHHHHHHHHHHH-----------------------------hCC--CchHHHHHH
Q 012296          353 HSA--TKFIGGHNDVLAGSISGSG-KLVTQIRNLHHV-----------------------------LGG--ALNPNAAYL  398 (466)
Q Consensus       353 ~S~--sK~lgg~gdv~gG~ivg~~-eli~~l~~~~~~-----------------------------~G~--~lsp~~a~l  398 (466)
                      .|+  +|.++++   .||++++++ ++.++++.....                             .|.  .+++..+++
T Consensus       184 ~s~~~~k~~~~g---~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~  260 (390)
T 3b8x_A          184 FSSFYSNHIATM---EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAI  260 (390)
T ss_dssp             EECCTTSSSCSS---SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHH
T ss_pred             EEccCCCCCccC---CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHH
Confidence            442  3444432   368998875 677766654321                             111  156777777


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 012296          399 IIRGMKTLHLRVQQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       399 ~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~  431 (466)
                      ++..++.++.++++..++++.+.+.|+++|++.
T Consensus       261 ~l~~l~~l~~~~~~~~~~~~~l~~~L~~~~~~~  293 (390)
T 3b8x_A          261 GIEQLKKLPRFISVRRKNAEYFLDKFKDHPYLD  293 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            777788888889999999999999999988764

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.85  E-value=2.8e-20  Score=194.67  Aligned_cols=216  Identities=10%  Similarity=0.089  Sum_probs=154.7

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHccCCCE---EEEcCCCCcchHHHHHhhcccCCceE-----EE
Q 012296          210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGH---IVTTTDCYRKTRIFIETVLPKMGITA-----TV  279 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all~~Gd~---Vlv~~~~y~~t~~~~~~~l~~~Gi~v-----~~  279 (466)
                      +..+++++++++++|++  +.++++++++++.+++.+++++||.   |+++.+.|++....+...++..|+++     ..
T Consensus       111 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~  190 (465)
T 3e9k_A          111 TGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMI  190 (465)
T ss_dssp             GTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEE
T ss_pred             HhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEE
Confidence            45678999999999984  5666667779999999999876655   99999999987665555555666653     22


Q ss_pred             eCC-----CCHHHHHHhhcC--CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEE
Q 012296          280 IDP-----ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLV  351 (466)
Q Consensus       280 vd~-----~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDiv  351 (466)
                      .+.     .|+++|+++|++  .++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .+...+++|++
T Consensus       191 ~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~  270 (465)
T 3e9k_A          191 KPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFA  270 (465)
T ss_dssp             CCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEE
T ss_pred             ecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEE
Confidence            221     279999999962  2489999999999999999999999999999999999999886543 33345689999


Q ss_pred             EECCccccC-ccccceeEEEEeCHHHHHHHHHHHH-------------------------HhCCCchHHHHHHHHHhhHH
Q 012296          352 LHSATKFIG-GHNDVLAGSISGSGKLVTQIRNLHH-------------------------VLGGALNPNAAYLIIRGMKT  405 (466)
Q Consensus       352 v~S~sK~lg-g~gdv~gG~ivg~~eli~~l~~~~~-------------------------~~G~~lsp~~a~l~l~~L~t  405 (466)
                      +.|++|+++ |++  ..|+++.++++++.+.....                         ...++.+......+..+++.
T Consensus       271 ~~s~~K~l~~gp~--~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~  348 (465)
T 3e9k_A          271 CWCSYKYLNAGAG--GIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEI  348 (465)
T ss_dssp             EECSSSTTCCCTT--CCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHH
T ss_pred             EECcccccccCCC--ceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHH
Confidence            999999995 554  24777778877654431100                         00113333333333333333


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHcC
Q 012296          406 -----LHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       406 -----l~~R~~~~~~na~~La~~L~~~  427 (466)
                           ++...++..++++.+.+.|+++
T Consensus       349 ~~~~~~~~~~~~~~~~~~~l~~~L~~~  375 (465)
T 3e9k_A          349 FKQATMKALRKKSVLLTGYLEYLIKHN  375 (465)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHhh
Confidence                 3445566677888888888875

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.84  E-value=6.7e-20  Score=194.63  Aligned_cols=213  Identities=12%  Similarity=0.069  Sum_probs=158.6

Q ss_pred             HHHHHHHHhhhCCC----cE--EEeCCHHHHHHHHHHHHccCC--------CEEEEcCCCCcchHHHHHhhcccCCceEE
Q 012296          213 VVVEEKMSALEGAE----ST--VIMASGMSASTVMLLALVPAG--------GHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (466)
Q Consensus       213 ~~Lee~LA~l~g~e----~~--l~~sSGs~Ai~~al~all~~G--------d~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~  278 (466)
                      +++++++++++|.+    ..  +++++|++|+.+++.+++.+|        |+|+++.+.|.+....    +...|++++
T Consensus       142 ~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~----~~~~G~~v~  217 (514)
T 3mad_A          142 AEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKA----AQYFGIKLV  217 (514)
T ss_dssp             HHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHH----HHHHTCEEE
T ss_pred             HHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHH----HHHcCCeeE
Confidence            34566678888875    44  778888899999999998776        9999999999986543    344588888


Q ss_pred             EeCCC-----CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc------------c
Q 012296          279 VIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN------------Q  341 (466)
Q Consensus       279 ~vd~~-----Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~------------~  341 (466)
                      .++.+     |+++|+++++++ +++|++++|+||+|.+.|+++|.++|+++|++||+|++|+.+..            .
T Consensus       218 ~v~~~~~~~~d~~~Le~~i~~~-~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~  296 (514)
T 3mad_A          218 RTPLDADYRADVAAMREAITPN-TVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPF  296 (514)
T ss_dssp             EECBCTTSCBCHHHHHHHCCTT-EEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCC
T ss_pred             EeeeCCCCCCCHHHHHHHhccC-CEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcc
Confidence            88754     899999999875 99999999999999999999999999999999999999875432            2


Q ss_pred             cccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH--H----------hCCCc--hHHHHHHHHHhh--HH
Q 012296          342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--V----------LGGAL--NPNAAYLIIRGM--KT  405 (466)
Q Consensus       342 ~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--~----------~G~~l--sp~~a~l~l~~L--~t  405 (466)
                      .....|+|+++.|++|+++++.  ..|+++.+++.+........  .          .|...  ....++.+++.+  ..
T Consensus       297 ~~~~~g~d~~~~s~~K~l~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~  374 (514)
T 3mad_A          297 DFRLEGVTSVSADTHKYGYGAK--GTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEG  374 (514)
T ss_dssp             STTSTTCCEEEECTTTTTCCCS--SCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCcEEEECchhccCCCC--CeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHH
Confidence            2234578999999999966554  35777666654433211000  0          11111  123455555433  44


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 012296          406 LHLRVQQQNSTALRMAKILEAHPKVKR  432 (466)
Q Consensus       406 l~~R~~~~~~na~~La~~L~~~p~V~~  432 (466)
                      +..++++..++++++.+.|+++|++..
T Consensus       375 ~~~~~~~~~~~~~~l~~~L~~~~g~~~  401 (514)
T 3mad_A          375 YLDATRRILQAADRLKAGVRAIPSLKI  401 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence            677888899999999999999887753

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.84  E-value=6.6e-20  Score=189.33  Aligned_cols=211  Identities=13%  Similarity=0.072  Sum_probs=151.2

Q ss_pred             hhHHHHHHHHHhhhCCC-cEEEeC-CHHHHH--HHHHHHHcc--C----------CCEEEEcCCCCcchHHHHHhhcccC
Q 012296          210 PTTVVVEEKMSALEGAE-STVIMA-SGMSAS--TVMLLALVP--A----------GGHIVTTTDCYRKTRIFIETVLPKM  273 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e-~~l~~s-SGs~Ai--~~al~all~--~----------Gd~Vlv~~~~y~~t~~~~~~~l~~~  273 (466)
                      ....+|++.|+++++.+ +.++++ ++++++  .+++.+++.  +          ||+|++++|+|.+....+    ...
T Consensus        78 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~----~~~  153 (427)
T 3ppl_A           78 DGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSIT----ERF  153 (427)
T ss_dssp             SCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHH----HHT
T ss_pred             CCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHH----HHc
Confidence            34678999999999873 444455 555888  478888877  6          999999999999866443    446


Q ss_pred             CceEEEeCC----CCHHHHHHhhcCCCceEEEEe-CCCCCCcccccHH---HHHHHH-HhcCCEEEEeCCCCCCCcc---
Q 012296          274 GITATVIDP----ADMEGLEAALNNNNVSLFFTE-SPTNPFLRCVDVK---LVSDLC-HKKGAIVCIDGTFATPLNQ---  341 (466)
Q Consensus       274 Gi~v~~vd~----~Dle~Le~ai~~~~tklV~le-sP~NPtG~v~dl~---~Ia~la-~~~gillIvDea~a~~~~~---  341 (466)
                      |.++..++.    .|+++|+++++..++++|++. +|+||||.+++.+   +|+++| +++|+++|+|++|....+.   
T Consensus       154 g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~  233 (427)
T 3ppl_A          154 GFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEF  233 (427)
T ss_dssp             TCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCC
Confidence            777766643    389999999954458999876 8899999999876   888888 9999999999998752211   


Q ss_pred             ----ccc-------ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH-----
Q 012296          342 ----KAL-------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-----  405 (466)
Q Consensus       342 ----~~l-------~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~t-----  405 (466)
                          +..       ..+.++++.|+||+ +++| .+.|++++++++++.++......+...++....++...++.     
T Consensus       234 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G-~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~  311 (427)
T 3ppl_A          234 PEVIDIVGLGEAAGNPNRFWAFTSTSKI-TLAG-AGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVR  311 (427)
T ss_dssp             CCCCCHHHHHHHTTCTTSEEEEEESTTT-SCTT-SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHH
T ss_pred             CCccchhhhhhccCCCCcEEEEechhhc-cCcC-ccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHH
Confidence                111       33567999999999 5555 45799999999999998877666655555554444333322     


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHc
Q 012296          406 --LHLRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       406 --l~~R~~~~~~na~~La~~L~~  426 (466)
                        +....+...++.+.+.+.|++
T Consensus       312 ~~~~~~~~~~~~~~~~l~~~L~~  334 (427)
T 3ppl_A          312 AVMRKHAASLAPKFNKVLEILDS  334 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence              233334445566666666654

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.84  E-value=1.7e-19  Score=184.66  Aligned_cols=209  Identities=13%  Similarity=0.111  Sum_probs=164.3

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-----
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----  282 (466)
                      .+...++++.+++++|.++++++++|++|+.+++.++ +++||+|+++.+.|.++...+    ...|+++.+++.     
T Consensus        31 g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~  106 (394)
T 1o69_A           31 GEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPI----CYLKAKPVFIDCDETYN  106 (394)
T ss_dssp             THHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHH----HHTTCEEEEECBCTTSS
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHH----HHcCCEEEEEEeCCCCC
Confidence            4778999999999999988899999999999999999 899999999999999976544    336888887763     


Q ss_pred             CCHHHHHHhhcCC--CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccccc---c-cCCcEEEECCc
Q 012296          283 ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKAL---S-LGADLVLHSAT  356 (466)
Q Consensus       283 ~Dle~Le~ai~~~--~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l---~-~gaDivv~S~s  356 (466)
                      .|+++|++++++.  ++++|++++   |+|...++++|.++|+++|+++|+|++++.+......   . .++|+...|.+
T Consensus       107 ~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~  183 (394)
T 1o69_A          107 IDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGN  183 (394)
T ss_dssp             BCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred             cCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCC
Confidence            3789999998752  389999975   7899999999999999999999999999853322111   1 23566666779


Q ss_pred             cccCccccceeEEEEeC-HHHHHHHHHHHHHhC-C-------------CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 012296          357 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG-G-------------ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA  421 (466)
Q Consensus       357 K~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G-~-------------~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La  421 (466)
                      |.+++.   .+|+++++ ++++++++....... .             .+++..+.+++..++.++.++++..++++.+.
T Consensus       184 K~l~~~---~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~  260 (394)
T 1o69_A          184 KIITTS---GGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYK  260 (394)
T ss_dssp             SSSCCS---SCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ccCCCC---CceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999865   37999995 788888876533210 0             03456666665567778888899999999999


Q ss_pred             HHHHcC
Q 012296          422 KILEAH  427 (466)
Q Consensus       422 ~~L~~~  427 (466)
                      +.|++.
T Consensus       261 ~~L~~~  266 (394)
T 1o69_A          261 EFLGEY  266 (394)
T ss_dssp             HHHTTT
T ss_pred             HHhccc
Confidence            999875

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.84  E-value=2.3e-19  Score=190.61  Aligned_cols=217  Identities=12%  Similarity=0.125  Sum_probs=154.8

Q ss_pred             hhHHHHHHHHHhhhC-C----CcEEEeCCHHHHHHHHHHHHccCCC----EEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          210 PTTVVVEEKMSALEG-A----ESTVIMASGMSASTVMLLALVPAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       210 p~~~~Lee~LA~l~g-~----e~~l~~sSGs~Ai~~al~all~~Gd----~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      +.++.+.+.+++..| .    ++.++++++++++.+++..++.+||    +|+++.|.|+.....+    ...|.++..+
T Consensus       133 ~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~----~~~g~~~v~~  208 (498)
T 3ihj_A          133 CIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVI----SELDAIQVNY  208 (498)
T ss_dssp             HHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHH----HHTTCEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHHH----HHcCCEEEEe
Confidence            445555555555553 2    4666666777999999999998875    9999999999765433    4457776666


Q ss_pred             CC-------CCHHHHHHhhcCC----CceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----
Q 012296          281 DP-------ADMEGLEAALNNN----NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----  342 (466)
Q Consensus       281 d~-------~Dle~Le~ai~~~----~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----  342 (466)
                      +.       .|+++|++++++.    ++++|++++|+||||.+++   +++|+++|+++|++||+|++|.......    
T Consensus       209 ~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~  288 (498)
T 3ihj_A          209 YLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRF  288 (498)
T ss_dssp             ECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCC
T ss_pred             eccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCc
Confidence            43       2899999998752    3899999999999999976   6679999999999999999987643321    


Q ss_pred             -cc-c----cC-------CcEEEECCccccCc-cccceeEEEE---eCHHHHHHHHHHHHHhCCCchHHHHHHHHHh---
Q 012296          343 -AL-S----LG-------ADLVLHSATKFIGG-HNDVLAGSIS---GSGKLVTQIRNLHHVLGGALNPNAAYLIIRG---  402 (466)
Q Consensus       343 -~l-~----~g-------aDivv~S~sK~lgg-~gdv~gG~iv---g~~eli~~l~~~~~~~G~~lsp~~a~l~l~~---  402 (466)
                       ++ .    .+       ..++++|+||.+.| +| .++||++   +++++++.+......... .+.....++...   
T Consensus       289 ~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G-~R~G~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~q~a~~~~l~~  366 (498)
T 3ihj_A          289 HSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECG-YRGGYMEVINLHPEIKGQLVKLLSVRLC-PPVSGQAAMDIVVNP  366 (498)
T ss_dssp             CCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSS-SCCEEEEEESCCHHHHHHHHHHHHHSCC-CCHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHhcccccCceeEEEEeccccccccCcc-cceEEEEEecCCHHHHHHHHHHHhccCC-CCHHHHHHHHHHhcC
Confidence             11 0    11       13788999999943 55 4688887   688999988877654332 233322222221   


Q ss_pred             -----------hHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 012296          403 -----------MKTLHLRVQQQNSTALRMAKILEAHPKVKR  432 (466)
Q Consensus       403 -----------L~tl~~R~~~~~~na~~La~~L~~~p~V~~  432 (466)
                                 ++.+..+.+++.++++.+.+.|+++|++..
T Consensus       367 ~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~  407 (498)
T 3ihj_A          367 PVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHC  407 (498)
T ss_dssp             CCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred             CccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEe
Confidence                       233455667788999999999999988754

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.84  E-value=7e-20  Score=186.59  Aligned_cols=216  Identities=15%  Similarity=0.122  Sum_probs=155.4

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHH-HHHhhcc---------c
Q 012296          207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRI-FIETVLP---------K  272 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~-~~~~~l~---------~  272 (466)
                      |..+..+++++.++++++.  ++++++++|++|+.+++.++.  .+||+||+.++.|++... .+. ...         .
T Consensus        84 ~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~-~~g~~~~~~~~~p  162 (395)
T 1vef_A           84 LPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLS-VTWEPKYREPFLP  162 (395)
T ss_dssp             SCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHH-TCCCHHHHGGGCS
T ss_pred             cCCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhh-hcCCcccccccCC
Confidence            4678899999999999954  667788888999999998764  689999999999976432 221 111         0


Q ss_pred             CCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCc------cc
Q 012296          273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN------QK  342 (466)
Q Consensus       273 ~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~~------~~  342 (466)
                      ....+..++..|+++|+++++++ +++|+++.++||||.+.+    +++|.++|+++|++||+|++|+....      ..
T Consensus       163 ~~~~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~  241 (395)
T 1vef_A          163 LVEPVEFIPYNDVEALKRAVDEE-TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFE  241 (395)
T ss_dssp             CSSCEEEECTTCHHHHHHHCCTT-EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHH
T ss_pred             CCCCeeEeCCCcHHHHHHHhccC-EEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhh
Confidence            11125555667999999999874 999999888899999888    99999999999999999999883211      12


Q ss_pred             ccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHHHHHH
Q 012296          343 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRM  420 (466)
Q Consensus       343 ~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~--~R~~~~~~na~~L  420 (466)
                      ....+.|++  |++|++++ | .+.|+++++++++++++..........++..+..+...++.+.  ...++..++++.+
T Consensus       242 ~~~~~~d~~--s~sK~~~~-g-~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l  317 (395)
T 1vef_A          242 HFGIVPDIL--TLAKALGG-G-VPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWF  317 (395)
T ss_dssp             HHTCCCSEE--EECGGGGT-T-SSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             hcCCCCCEE--EEcccccC-C-CceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            223457876  78999997 4 3468888888877765441111122345666555555555543  2456677888889


Q ss_pred             HHHHHcCC
Q 012296          421 AKILEAHP  428 (466)
Q Consensus       421 a~~L~~~p  428 (466)
                      .+.|++.+
T Consensus       318 ~~~l~~~~  325 (395)
T 1vef_A          318 MEKLRAIP  325 (395)
T ss_dssp             HHHHHTSC
T ss_pred             HHHHHHhh
Confidence            99998764

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.84  E-value=3.6e-19  Score=182.17  Aligned_cols=215  Identities=13%  Similarity=0.141  Sum_probs=148.8

Q ss_pred             hhHHHHHHHHHhhh------CC--CcEEEeCCHHHHHHHHHHHHccCCC-----EEEEc-CCCCcchHHHHHh--hcccC
Q 012296          210 PTTVVVEEKMSALE------GA--ESTVIMASGMSASTVMLLALVPAGG-----HIVTT-TDCYRKTRIFIET--VLPKM  273 (466)
Q Consensus       210 p~~~~Lee~LA~l~------g~--e~~l~~sSGs~Ai~~al~all~~Gd-----~Vlv~-~~~y~~t~~~~~~--~l~~~  273 (466)
                      ....+|++.+++++      +.  ++++++++|++|+.+++.+++++||     +|+++ .|.|++.......  .....
T Consensus        75 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~  154 (417)
T 3g7q_A           75 QGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSA  154 (417)
T ss_dssp             TSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEEC
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccc
Confidence            44668888888875      23  5677777778999999999999987     89997 9999875433211  12233


Q ss_pred             CceEEEeCC------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc----
Q 012296          274 GITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----  340 (466)
Q Consensus       274 Gi~v~~vd~------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~----  340 (466)
                      +..+..++.      .|+++|+  +++ ++++|++++|+||||.+++   +++|+++|++||+++|+|++|+.+..    
T Consensus       155 ~~~~~~~~~~~~~~~~d~~~l~--~~~-~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~  231 (417)
T 3g7q_A          155 RPNIELLPEGQFKYHVDFEHLH--IGE-ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIF  231 (417)
T ss_dssp             CCEEEEEGGGEEEEECCGGGCC--CCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBC
T ss_pred             cCcccccCCcccccccCHHHhc--ccc-CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccc
Confidence            455554442      3778887  555 4999999999999999998   88899999999999999999875321    


Q ss_pred             --ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH------HHH-HHH
Q 012296          341 --QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHL-RVQ  411 (466)
Q Consensus       341 --~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~t------l~~-R~~  411 (466)
                        ..+...+.++++.|+|| ++++| .+.|+++++++++++++......+...++..+.++...++.      +.. ..+
T Consensus       232 ~~~~~~~~~~~i~~~s~sK-~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  309 (417)
T 3g7q_A          232 SEARPLWNPNIILCMSLSK-LGLPG-SRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKP  309 (417)
T ss_dssp             SCCCCCCCTTEEEEEESGG-GTCTT-SCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHH
T ss_pred             cccccCCCCCEEEEEechh-ccCCC-cceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHH
Confidence              11223467899999999 46665 45789999999999998877666554444444333333321      111 234


Q ss_pred             HHHHHHHHHHHHHHc-CCC
Q 012296          412 QQNSTALRMAKILEA-HPK  429 (466)
Q Consensus       412 ~~~~na~~La~~L~~-~p~  429 (466)
                      +..++++.+.+.|++ .+.
T Consensus       310 ~~~~~~~~~~~~l~~~l~~  328 (417)
T 3g7q_A          310 FYYQRVQQTIAIIRRYLSE  328 (417)
T ss_dssp             HHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHHHhccc
Confidence            456677777788876 443

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.84  E-value=3.1e-19  Score=186.45  Aligned_cols=224  Identities=14%  Similarity=0.112  Sum_probs=154.2

Q ss_pred             CccccCCCchhHHHHHHHHHhhh-CCC-------cEEE--eCCHHHHHHH--HHHHHccCCCEEEEcCCCCcchHHHHHh
Q 012296          201 SFEYGRYGNPTTVVVEEKMSALE-GAE-------STVI--MASGMSASTV--MLLALVPAGGHIVTTTDCYRKTRIFIET  268 (466)
Q Consensus       201 ~~~Y~R~~np~~~~Lee~LA~l~-g~e-------~~l~--~sSGs~Ai~~--al~all~~Gd~Vlv~~~~y~~t~~~~~~  268 (466)
                      .+.|.  +.....++++.+++++ |.+       +.++  +++|++|+.+  .+.+++.+||+|++++|+|......+..
T Consensus        87 ~~~Y~--~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~  164 (448)
T 3meb_A           87 NKEYP--PVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDK  164 (448)
T ss_dssp             CCSCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHH
T ss_pred             CCCCC--CCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHh
Confidence            34454  2344668889999886 653       4555  6666789877  5567788999999999999987655542


Q ss_pred             hcccCCceEEEeCC---C-----CHHHHHHhhcC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCC
Q 012296          269 VLPKMGITATVIDP---A-----DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF  335 (466)
Q Consensus       269 ~l~~~Gi~v~~vd~---~-----Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~  335 (466)
                      .++..|.++..++.   .     |+++|++++++  .+++++++++|+||||.+.+   +++|+++|+++|+++|+|++|
T Consensus       165 ~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay  244 (448)
T 3meb_A          165 VFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAY  244 (448)
T ss_dssp             HHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             hHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEeccc
Confidence            22356776666543   2     78999999874  23789999999999999987   456999999999999999998


Q ss_pred             CCCCccc------cc----ccC-CcEEEECCccccCccccceeEEE--Ee---------CH----HHHHHHHHHHHHhCC
Q 012296          336 ATPLNQK------AL----SLG-ADLVLHSATKFIGGHNDVLAGSI--SG---------SG----KLVTQIRNLHHVLGG  389 (466)
Q Consensus       336 a~~~~~~------~l----~~g-aDivv~S~sK~lgg~gdv~gG~i--vg---------~~----eli~~l~~~~~~~G~  389 (466)
                      .......      ..    ..+ ..+++.|+||.++.+|.. .|++  ++         ++    ++++.+.........
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R-iG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  323 (448)
T 3meb_A          245 QGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGER-IGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWS  323 (448)
T ss_dssp             TTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGC-CEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             ccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCcccc-ceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccC
Confidence            7543221      01    123 347899999999988754 5665  54         45    555666554443333


Q ss_pred             CchHHHHHHHHHhh----------HHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          390 ALNPNAAYLIIRGM----------KTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       390 ~lsp~~a~l~l~~L----------~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      ..+...++++...+          +.+....+++.++++.+.+.|+++
T Consensus       324 ~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  371 (448)
T 3meb_A          324 MSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKR  371 (448)
T ss_dssp             SCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444444333332          235555667788889999999876

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.84  E-value=2.9e-19  Score=189.97  Aligned_cols=215  Identities=15%  Similarity=0.035  Sum_probs=157.8

Q ss_pred             HHHHHHHhhhCCC-------cEEEeCCHHHHHHHHHHHHccC--------CC-----EEEEcCCCCcchHHHHHhhcccC
Q 012296          214 VVEEKMSALEGAE-------STVIMASGMSASTVMLLALVPA--------GG-----HIVTTTDCYRKTRIFIETVLPKM  273 (466)
Q Consensus       214 ~Lee~LA~l~g~e-------~~l~~sSGs~Ai~~al~all~~--------Gd-----~Vlv~~~~y~~t~~~~~~~l~~~  273 (466)
                      ++++++++++|.+       ..+++++|++|+.+++.++..+        |+     +|+++.+.|.....    .+...
T Consensus        99 ~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~----~~~~~  174 (502)
T 3hbx_A           99 RCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEK----FARYF  174 (502)
T ss_dssp             HHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHH----HHHHT
T ss_pred             HHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHH----HHHHc
Confidence            4566788888876       3456888889999888887655        77     99999999987553    34456


Q ss_pred             CceEEEeCC------CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhc------CCEEEEeCCCCCCCc-
Q 012296          274 GITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK------GAIVCIDGTFATPLN-  340 (466)
Q Consensus       274 Gi~v~~vd~------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~------gillIvDea~a~~~~-  340 (466)
                      |+++++++.      .|+++|+++++++ +++|++++|+||+|.+.|+++|.++|+++      |+++++|++|+.+.. 
T Consensus       175 G~~~~~v~~~~~~~~~d~~~l~~~i~~~-t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p  253 (502)
T 3hbx_A          175 EVELKEVKLSEGYYVMDPQQAVDMVDEN-TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAP  253 (502)
T ss_dssp             TCEEEEECCBTTBCSCCHHHHHHHCCTT-EEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHH
T ss_pred             CceeEEEecCCCcCcCCHHHHHHHHhhC-CEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhh
Confidence            888888763      2899999999985 99999999999999999999999999999      999999999874321 


Q ss_pred             --cccc-----ccCCcEEEECCccccCccccceeEEE-EeCHHHHHHHHH-HHHHhCCC------------chHHHHHHH
Q 012296          341 --QKAL-----SLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRN-LHHVLGGA------------LNPNAAYLI  399 (466)
Q Consensus       341 --~~~l-----~~gaDivv~S~sK~lgg~gdv~gG~i-vg~~eli~~l~~-~~~~~G~~------------lsp~~a~l~  399 (466)
                        ....     ..++|++..|++|+++++.+  +|++ +.+++++..... ....++..            ......|.+
T Consensus       254 ~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g--~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~a  331 (502)
T 3hbx_A          254 FLYPELEWDFRLPLVKSINVSGHKYGLVYAG--IGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQ  331 (502)
T ss_dssp             HHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHH
T ss_pred             hhCcccccccCCCCceEEEECcccccCCCCC--eEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHH
Confidence              1111     23789999999999977753  3554 445554422111 11111111            123445555


Q ss_pred             HH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeC
Q 012296          400 IR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHY  435 (466)
Q Consensus       400 l~--~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~y  435 (466)
                      ++  +.+.+..++++..++++++.+.|+++++++.+..
T Consensus       332 l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~  369 (502)
T 3hbx_A          332 LIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSK  369 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence            54  4566788899999999999999999998765543

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.83  E-value=3.1e-19  Score=183.70  Aligned_cols=211  Identities=10%  Similarity=0.100  Sum_probs=149.1

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHH--HHHHHHcc--C---------CCEEEEcCCCCcchHHHHHhhcccCC
Q 012296          210 PTTVVVEEKMSALEGAE--STVIMASGMSAST--VMLLALVP--A---------GGHIVTTTDCYRKTRIFIETVLPKMG  274 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~--~al~all~--~---------Gd~Vlv~~~~y~~t~~~~~~~l~~~G  274 (466)
                      +...+|++.|+++++.+  +.+++++|++++.  +++.+++.  +         ||+|++++|+|.+....+    ...|
T Consensus        70 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g  145 (423)
T 3ez1_A           70 AGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLL----QTLG  145 (423)
T ss_dssp             TCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHH----HHHT
T ss_pred             CChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHH----HHcC
Confidence            44678999999999873  4555555568987  88888887  7         599999999998866443    3457


Q ss_pred             ceEEEeCC----CCHHHHHHhhc-CCCceEEEEe-CCCCCCcccccHH---HHHHHH-HhcCCEEEEeCCCCCCCcc---
Q 012296          275 ITATVIDP----ADMEGLEAALN-NNNVSLFFTE-SPTNPFLRCVDVK---LVSDLC-HKKGAIVCIDGTFATPLNQ---  341 (466)
Q Consensus       275 i~v~~vd~----~Dle~Le~ai~-~~~tklV~le-sP~NPtG~v~dl~---~Ia~la-~~~gillIvDea~a~~~~~---  341 (466)
                      .++..++.    .|+++|+++++ ..++++|++. +|+||||.+++.+   +|+++| +++|+++|+|++|......   
T Consensus       146 ~~~~~v~~~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~  225 (423)
T 3ez1_A          146 FELLTVDMQSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEED  225 (423)
T ss_dssp             CEEEEEEEETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSS
T ss_pred             CEEEeccCCCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCC
Confidence            77666543    38999999994 2248999865 8999999999876   788888 8999999999998742111   


Q ss_pred             -----ccc-------ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH----
Q 012296          342 -----KAL-------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----  405 (466)
Q Consensus       342 -----~~l-------~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~t----  405 (466)
                           ...       ..+.++++.|+||+ +++| .+.|++++++++++.++......+...++....++...++.    
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  303 (423)
T 3ez1_A          226 RAEPVNFVVLARDAGYPDRAFVFASTSKI-TFAG-AGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGG  303 (423)
T ss_dssp             CCCCCCHHHHHHHHTCTTSEEEEEESTTT-SCSS-SSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTH
T ss_pred             CCCCcchhhhhhccCCCCeEEEEeCchhh-ccCC-cceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccch
Confidence                 111       23567999999998 4444 35799999999999998877766655566555444433333    


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHc
Q 012296          406 ----LHLRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       406 ----l~~R~~~~~~na~~La~~L~~  426 (466)
                          +....+...++.+.+.+.|.+
T Consensus       304 ~~~~~~~~~~~~~~~~~~l~~~l~~  328 (423)
T 3ez1_A          304 LEGLMRDHAAIIAPKFRAVDEVLRA  328 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                222233344455555555543

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.83  E-value=2.9e-19  Score=183.59  Aligned_cols=210  Identities=13%  Similarity=0.123  Sum_probs=145.4

Q ss_pred             HHHHHHHHHhhh----CCC---cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC--
Q 012296          212 TVVVEEKMSALE----GAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~e---~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--  282 (466)
                      ..+|++.+++++    +.+   +++++++|++|+..++.+++++||+|++++|.|.+....    +...|.++..++.  
T Consensus        82 ~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~v~~~~  157 (418)
T 3rq1_A           82 IPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVI----CSDTGRTLVTYSLFD  157 (418)
T ss_dssp             CHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHH----HHHTTCEEEEECSBC
T ss_pred             hHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHH----HHHcCCEEEEEeeeC
Confidence            345666666643    445   566666666999999999999999999999999886543    4456888877763  


Q ss_pred             ----CCHHHHHHhhcC----CCce-EEEEeCC-CCCCcccccHHH---HHHHHH------hcCCEEEEeCCCCCCCccc-
Q 012296          283 ----ADMEGLEAALNN----NNVS-LFFTESP-TNPFLRCVDVKL---VSDLCH------KKGAIVCIDGTFATPLNQK-  342 (466)
Q Consensus       283 ----~Dle~Le~ai~~----~~tk-lV~lesP-~NPtG~v~dl~~---Ia~la~------~~gillIvDea~a~~~~~~-  342 (466)
                          .|+++|++++++    + ++ +|++++| +||||.+.+.++   |+++|+      ++|+++|+|++|....... 
T Consensus       158 ~~~~~d~~~l~~~l~~~~~~~-~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~  236 (418)
T 3rq1_A          158 EHNNFNHEAFQNRVNELAAKQ-TNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKD  236 (418)
T ss_dssp             TTSSBCHHHHHHHHHHHHHHC-SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHH
T ss_pred             CCCCcCHHHHHHHHHHhhccC-CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChH
Confidence                378999999874    3 45 8999999 999999998655   555565      8999999999986432211 


Q ss_pred             ---c-c----ccCCc---EEEECCccccCccccceeEEEEe---CHHHHHHHHHHHHHhC----CCchHHHHHHHHHhhH
Q 012296          343 ---A-L----SLGAD---LVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRNLHHVLG----GALNPNAAYLIIRGMK  404 (466)
Q Consensus       343 ---~-l----~~gaD---ivv~S~sK~lgg~gdv~gG~ivg---~~eli~~l~~~~~~~G----~~lsp~~a~l~l~~L~  404 (466)
                         . .    ....+   +++.|+||.++.+|. +.|++++   ++++++.++..+....    ...+...+.++...++
T Consensus       237 ~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~  315 (418)
T 3rq1_A          237 EVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQ-RVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVA  315 (418)
T ss_dssp             HHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSS-CCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCC-cceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhC
Confidence               1 1    11223   788999999998774 5788888   8999988876554321    2334444443333332


Q ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHcC
Q 012296          405 ----------TLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       405 ----------tl~~R~~~~~~na~~La~~L~~~  427 (466)
                                .+....++..++++.+.+.|+++
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  348 (418)
T 3rq1_A          316 DPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV  348 (418)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                      12233455667778888888765

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.83  E-value=1.7e-19  Score=179.88  Aligned_cols=222  Identities=14%  Similarity=0.077  Sum_probs=160.0

Q ss_pred             CccccCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEE
Q 012296          201 SFEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (466)
Q Consensus       201 ~~~Y~R~~np~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~  278 (466)
                      .|.+++...+..+++++++++++|.+  +.+++++|++|+..++..++++||+|+++++.|++....  ..+...|.++.
T Consensus        40 ~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~--~~~~~~g~~~~  117 (359)
T 1svv_A           40 TQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHET--GAIEATGHKVV  117 (359)
T ss_dssp             CCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSST--THHHHTTCCEE
T ss_pred             hccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhCCCCEEEEcccchHHHHHH--HHHhcCCCeeE
Confidence            35555666788999999999999873  466777888999999999999999999999999875431  02345688888


Q ss_pred             EeCCC----CHHHHHHhhcCC------CceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCC---CCC---C
Q 012296          279 VIDPA----DMEGLEAALNNN------NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF---ATP---L  339 (466)
Q Consensus       279 ~vd~~----Dle~Le~ai~~~------~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~---a~~---~  339 (466)
                      .++..    |+++|+++++++      ++++|++++| ||+|.+.+   +++|.++|+++|+++|+|+++   ..+   .
T Consensus       118 ~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~  196 (359)
T 1svv_A          118 TAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVN  196 (359)
T ss_dssp             EECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTC
T ss_pred             EEeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCc
Confidence            77643    589999998764      2899999999 79999998   889999999999999999997   211   1


Q ss_pred             ccccc--ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCC----CchHHHHHHHHHhh--HHHHHHHH
Q 012296          340 NQKAL--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG----ALNPNAAYLIIRGM--KTLHLRVQ  411 (466)
Q Consensus       340 ~~~~l--~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~----~lsp~~a~l~l~~L--~tl~~R~~  411 (466)
                      .....  ..+.|+++.|++|+.+..   ..|+++.+++++++++......+.    ......+.  ...+  ..+....+
T Consensus       197 ~~~~~~~~~~~d~~~~s~~K~g~~~---~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~  271 (359)
T 1svv_A          197 DLTLADIARLTDMFYIGATKAGGMF---GEALIILNDALKPNARHLIKQRGALMAKGWLLGIQF--EVLMKDNLFFELGA  271 (359)
T ss_dssp             CCCHHHHHHHCSEEEEECTTTTCSS---CEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHH--HHHTSTTHHHHHHH
T ss_pred             chhhhhhhhcCCEEEEecccCCCCC---ceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHH--HHHHhhhhHHHHHH
Confidence            11111  135799999999974432   358999999888777654322222    11112221  1112  23455667


Q ss_pred             HHHHHHHHHHHHHHcCCCeE
Q 012296          412 QQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       412 ~~~~na~~La~~L~~~p~V~  431 (466)
                      +..++++.+.+.| +.+++.
T Consensus       272 ~~~~~~~~l~~~L-~~~~~~  290 (359)
T 1svv_A          272 HSNKMAAILKAGL-EACGIR  290 (359)
T ss_dssp             HHHHHHHHHHHHH-HHTTCC
T ss_pred             HHHHHHHHHHHHh-ccCCeE
Confidence            7788889999999 456653

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.83  E-value=2.6e-19  Score=178.84  Aligned_cols=203  Identities=13%  Similarity=0.131  Sum_probs=151.0

Q ss_pred             CCchhHHHHHHHHHhhhC---C--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          207 YGNPTTVVVEEKMSALEG---A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g---~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      |+.+...++++.++++++   .  ++.+++++|++++.+++.++   ||+|+++ |.|++....    +...|.++..++
T Consensus        53 y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~---gd~Vl~~-p~y~~~~~~----~~~~g~~~~~v~  124 (335)
T 1uu1_A           53 YYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF---DRSVFFP-PTYSCYRIF----AKAVGAKFLEVP  124 (335)
T ss_dssp             CCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS---SEEEECS-SSCHHHHHH----HHHHTCEEEECC
T ss_pred             CCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh---CCcEEEC-CCcHHHHHH----HHHcCCeEEEec
Confidence            344457899999999998   4  45666666679999998887   8999999 999886543    344577877775


Q ss_pred             CC-----CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc---cc-ccccCCcEEE
Q 012296          282 PA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---QK-ALSLGADLVL  352 (466)
Q Consensus       282 ~~-----Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~---~~-~l~~gaDivv  352 (466)
                      ..     |+++|     + ++++|++++|+||||.+.+.++|.++++..| ++|+|++|.....   .. ....+.++++
T Consensus       125 ~~~~~~~d~~~l-----~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~  197 (335)
T 1uu1_A          125 LTKDLRIPEVNV-----G-EGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVI  197 (335)
T ss_dssp             CCTTSCCCCCCC-----C-TTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEE
T ss_pred             cCCCCCCCHHHc-----C-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEE
Confidence            32     34444     3 4899999999999999999999999999989 9999999864211   11 1224568999


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L---~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      .|+||+++.+| .+.|+++++++++++++.....+  +.++...+++...+   +.++.+.++..++++.+.+.|+++
T Consensus       198 ~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  272 (335)
T 1uu1_A          198 RTFSKAFSLAA-QRVGYVVASEKFIDAYNRVRLPF--NVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM  272 (335)
T ss_dssp             EESTTTTTCGG-GCCEEEEECHHHHHHHHHHSCTT--CSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecchhhcCCcc-cCeEEEEeCHHHHHHHHHhcCCC--CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999998666 45799999999998887765443  34444444443333   345666777888899999999876

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.83  E-value=1.3e-19  Score=188.22  Aligned_cols=212  Identities=12%  Similarity=0.090  Sum_probs=146.3

Q ss_pred             hhHHHHHHHHHhhh----CC--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCce-------
Q 012296          210 PTTVVVEEKMSALE----GA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT-------  276 (466)
Q Consensus       210 p~~~~Lee~LA~l~----g~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~-------  276 (466)
                      +...+|++.+++++    +.  ++.++++++++++..+ .+++++||+|++++|.|.+....+.    ..|.+       
T Consensus       111 ~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~g~~~~~~  185 (449)
T 3qgu_A          111 QGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVDTSV----MMGMTGDHNGTG  185 (449)
T ss_dssp             TCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHHHHH----HHTCSCCBCSSS
T ss_pred             CCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHHHHH----HcCCcccccccc
Confidence            44678999999987    43  4555666666888887 8889999999999999998665443    33444       


Q ss_pred             ---EEEeCCCCHHHHHHhhcC-CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----ccc
Q 012296          277 ---ATVIDPADMEGLEAALNN-NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL  344 (466)
Q Consensus       277 ---v~~vd~~Dle~Le~ai~~-~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----~~l  344 (466)
                         +..++..+.+.+...+.+ .++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|......     ...
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~  265 (449)
T 3qgu_A          186 FDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIY  265 (449)
T ss_dssp             BTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGG
T ss_pred             cceeEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHh
Confidence               555544322122111211 24899999999999999986   778888899999999999998752211     111


Q ss_pred             c----cCCcEEEECCccccCccccceeEEEEeCHHHHH--------HHHHHHHHhCCCchHHHHHHHHHh-----hHHHH
Q 012296          345 S----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVT--------QIRNLHHVLGGALNPNAAYLIIRG-----MKTLH  407 (466)
Q Consensus       345 ~----~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~--------~l~~~~~~~G~~lsp~~a~l~l~~-----L~tl~  407 (466)
                      .    .+.++++.|++|.+|.+| .+.|++++++++++        .+...........++....++...     .+.+.
T Consensus       266 ~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  344 (449)
T 3qgu_A          266 EIPGADEVAIETCSFSKYAGFTG-VRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMN  344 (449)
T ss_dssp             GSTTGGGTEEEEEECSGGGTCTT-CCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHH
T ss_pred             hccCCCCcEEEEecchhhcCCcc-ceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHH
Confidence            1    246799999999998666 35799999887764        344333333233444444433333     34466


Q ss_pred             HHHHHHHHHHHHHHHHHHcC
Q 012296          408 LRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       408 ~R~~~~~~na~~La~~L~~~  427 (466)
                      .+.++..++++.+.+.|+++
T Consensus       345 ~~~~~~~~~~~~l~~~L~~~  364 (449)
T 3qgu_A          345 AMIKFYKENAQILKTTFTEM  364 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHC
Confidence            66777888999999999876

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.5e-19  Score=190.59  Aligned_cols=214  Identities=12%  Similarity=0.102  Sum_probs=157.7

Q ss_pred             HHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHHcc-----CC---CEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          213 VVVEEKMSALEGAE----STVIMASGMSASTVMLLALVP-----AG---GHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       213 ~~Lee~LA~l~g~e----~~l~~sSGs~Ai~~al~all~-----~G---d~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      +++++++++++|.+    ..+++++|++|+.+++.+++.     +|   |+|+++.+.|.+....    +...|++++.+
T Consensus       110 ~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~----~~~~G~~~~~v  185 (497)
T 3mc6_A          110 SEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKA----AYYFGMKLRHV  185 (497)
T ss_dssp             HHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHH----HHHSCCEEEEE
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHH----HHHcCCeEEEE
Confidence            45667788888875    577778888999999988865     56   8999999999986543    34468888877


Q ss_pred             CC------CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-------------cc
Q 012296          281 DP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-------------NQ  341 (466)
Q Consensus       281 d~------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-------------~~  341 (466)
                      +.      .|+++|+++++++ +++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+.             ..
T Consensus       186 ~~~~~~~~~d~~~l~~~i~~~-~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~  264 (497)
T 3mc6_A          186 ELDPTTYQVDLGKVKKFINKN-TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLL  264 (497)
T ss_dssp             CBCTTTCSBCTTTTGGGCCSS-EEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCC
T ss_pred             ecCcccCcCCHHHHHHHHhhC-CEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccc
Confidence            53      2589999999885 9999999999999999999999999999999999999987321             12


Q ss_pred             cccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHH-H-HHhCCC----------ch--HHHHHHHHHhh--HH
Q 012296          342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-H-HVLGGA----------LN--PNAAYLIIRGM--KT  405 (466)
Q Consensus       342 ~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~-~-~~~G~~----------ls--p~~a~l~l~~L--~t  405 (466)
                      .....|+|+++.|++|+++++.  .+|+++.+++.+...... . ...+..          ..  ...+|++++.+  ..
T Consensus       265 ~~~~~g~d~~~~s~~K~l~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~  342 (497)
T 3mc6_A          265 DFRVPGVTSISCDTHKYGFAPK--GSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENG  342 (497)
T ss_dssp             STTSTTCCEEEEETTTTTCCCS--SCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCcEEEECchhhcCCCC--CceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHH
Confidence            3334689999999999976654  358877776554432111 0 111110          00  23355555544  34


Q ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCCeEEE
Q 012296          406 LHLRVQQQNSTALRMAKILEA-HPKVKRV  433 (466)
Q Consensus       406 l~~R~~~~~~na~~La~~L~~-~p~V~~V  433 (466)
                      +..++++..++++++.+.|++ .|++..+
T Consensus       343 ~~~~~~~~~~~~~~l~~~L~~~~~g~~~~  371 (497)
T 3mc6_A          343 YIESCQEIVGAAMKFKKYIQENIPDLDIM  371 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCTTCEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence            566788889999999999999 5887644

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.83  E-value=1.9e-19  Score=187.93  Aligned_cols=214  Identities=13%  Similarity=-0.035  Sum_probs=155.1

Q ss_pred             HHHHHHHHHhhhCCC--c-----EEEeCCHHHHHHHHHHHHcc--------CC-----CEEEEcCCCCcchHHHHHhhcc
Q 012296          212 TVVVEEKMSALEGAE--S-----TVIMASGMSASTVMLLALVP--------AG-----GHIVTTTDCYRKTRIFIETVLP  271 (466)
Q Consensus       212 ~~~Lee~LA~l~g~e--~-----~l~~sSGs~Ai~~al~all~--------~G-----d~Vlv~~~~y~~t~~~~~~~l~  271 (466)
                      .+++++.+++++|.+  .     ++++++|++|+.+++.+++.        +|     ++|++++ .|.....    .+.
T Consensus        83 ~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~----~~~  157 (452)
T 2dgk_A           83 DLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHK----FAR  157 (452)
T ss_dssp             HHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHH----HHH
T ss_pred             HHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHH----HHH
Confidence            345667778899874  2     67788888999998887754        55     5899998 7766443    344


Q ss_pred             cCCceEEEeCCC------CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhc------CCEEEEeCCCCCCC
Q 012296          272 KMGITATVIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK------GAIVCIDGTFATPL  339 (466)
Q Consensus       272 ~~Gi~v~~vd~~------Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~------gillIvDea~a~~~  339 (466)
                      ..|++++.++..      |+++|+++|+++ |++|++++|+||||.+.|+++|+++|+++      |+++++|++|+.+.
T Consensus       158 ~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~-t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~  236 (452)
T 2dgk_A          158 YWDVELREIPMRPGQLFMDPKRMIEACDEN-TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFL  236 (452)
T ss_dssp             HTTCEEEECCCBTTBCSCCHHHHHHHCCTT-EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGT
T ss_pred             HcCceEEEEecCCCCCeECHHHHHHHHhhC-CEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHH
Confidence            568888888642      799999999885 99999999999999999999999999995      99999999987643


Q ss_pred             c---cc--cc---ccCCcEEEECCccccCccccceeEEEEeCH-HHH-HHHHHHHHHhCCC----------c--hHHHHH
Q 012296          340 N---QK--AL---SLGADLVLHSATKFIGGHNDVLAGSISGSG-KLV-TQIRNLHHVLGGA----------L--NPNAAY  397 (466)
Q Consensus       340 ~---~~--~l---~~gaDivv~S~sK~lgg~gdv~gG~ivg~~-eli-~~l~~~~~~~G~~----------l--sp~~a~  397 (466)
                      .   ..  +.   ..++|+++.|+||++.++.  .+|+++.++ +++ +.+.......+..          .  .....|
T Consensus       237 ~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  314 (452)
T 2dgk_A          237 APFVAPDIVWDFRLPRVKSISASGHKFGLAPL--GCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQY  314 (452)
T ss_dssp             HHHHCTTCCCSTTSTTEEEEEEETTTTTCCCS--SCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHH
T ss_pred             HHhhCccchhhcCCCCCcEEEECcccccCCCC--CeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHH
Confidence            2   11  11   2378999999999886654  368877754 343 3332111111111          1  233445


Q ss_pred             HHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 012296          398 LIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRV  433 (466)
Q Consensus       398 l~l~--~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V  433 (466)
                      .+++  +.+.+..++++..++++++.+.|+++++++.+
T Consensus       315 aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~  352 (452)
T 2dgk_A          315 YEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFI  352 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe
Confidence            5444  34557778888999999999999999877544

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.83  E-value=1.3e-18  Score=181.64  Aligned_cols=218  Identities=16%  Similarity=0.120  Sum_probs=155.9

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc---------cCC-CEEEEcCCCCcchHHHHHhhcc-----
Q 012296          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV---------PAG-GHIVTTTDCYRKTRIFIETVLP-----  271 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all---------~~G-d~Vlv~~~~y~~t~~~~~~~l~-----  271 (466)
                      +.++...++++.|++++|.+.++++++|++|+..++..++         .+| |+||+.++.|++..........     
T Consensus       115 ~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~  194 (439)
T 2oat_A          115 FYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSY  194 (439)
T ss_dssp             SEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcc
Confidence            4567899999999999998888899999999999998765         357 8999999999874322211111     


Q ss_pred             ----cCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccc----cHHHHHHHHHhcCCEEEEeCCCCCCCc---
Q 012296          272 ----KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATPLN---  340 (466)
Q Consensus       272 ----~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~----dl~~Ia~la~~~gillIvDea~a~~~~---  340 (466)
                          .....+..++..|+++|+++++..++++|+++..+|++|.+.    ++++|.++|++||++||+||++.....   
T Consensus       195 ~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~  274 (439)
T 2oat_A          195 DGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR  274 (439)
T ss_dssp             TTSCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred             cCCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc
Confidence                111355667777999999999533489999987777889876    799999999999999999999853211   


Q ss_pred             ---ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHH
Q 012296          341 ---QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNS  415 (466)
Q Consensus       341 ---~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~--~R~~~~~~  415 (466)
                         ........|++  |++|.+++ |...+|++++++++++.+...........++..+..++..++.+.  ...++..+
T Consensus       275 ~~~~~~~~~~~Di~--t~sK~l~~-G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~  351 (439)
T 2oat_A          275 WLAVDYENVRPDIV--LLGKALSG-GLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADK  351 (439)
T ss_dssp             SSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             chhHHHhCCCCcEE--EecccccC-CCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence               12223346876  78899996 323579999999888766432111112345666666655665543  24566777


Q ss_pred             HHHHHHHHHHcC
Q 012296          416 TALRMAKILEAH  427 (466)
Q Consensus       416 na~~La~~L~~~  427 (466)
                      +.+.+.+.|++.
T Consensus       352 ~~~~l~~~L~~l  363 (439)
T 2oat_A          352 LGIILRNELMKL  363 (439)
T ss_dssp             HHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHh
Confidence            888888888764

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.83  E-value=3.5e-19  Score=184.38  Aligned_cols=216  Identities=14%  Similarity=0.138  Sum_probs=153.6

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc-------CC-CEEEEcCCCCcchHHHHHhhcc-------
Q 012296          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETVLP-------  271 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~-------~G-d~Vlv~~~~y~~t~~~~~~~l~-------  271 (466)
                      +.++..++|+++|++++|.++++++++|++|+.+++..+..       +| ++||+.++.|++..........       
T Consensus        96 ~~~~~~~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~  175 (420)
T 2pb2_A           96 FTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDG  175 (420)
T ss_dssp             SCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTT
T ss_pred             cCCHHHHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCcccccc
Confidence            56788999999999999988888999999999999988765       67 4999999999874322211111       


Q ss_pred             --cCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc----cccHHHHHHHHHhcCCEEEEeCCCCCCCc-----
Q 012296          272 --KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR----CVDVKLVSDLCHKKGAIVCIDGTFATPLN-----  340 (466)
Q Consensus       272 --~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~----v~dl~~Ia~la~~~gillIvDea~a~~~~-----  340 (466)
                        .....+..++..|+++|+++++++ +++|++++++|++|.    ..++++|.++|+++|++||+||++.....     
T Consensus       176 ~~p~~~~~~~~~~~d~~~le~~i~~~-~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~  254 (420)
T 2pb2_A          176 FGPKPADIIHVPFNDLHAVKAVMDDH-TCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLF  254 (420)
T ss_dssp             SSSCCSCEEEECTTCHHHHHHHCCTT-EEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred             CCCCCCCeEEecCCCHHHHHHHhccC-ceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHH
Confidence              111235666667999999999874 999999999888785    24689999999999999999999853211     


Q ss_pred             -ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHH--HHHHHHHHHHH
Q 012296          341 -QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL--HLRVQQQNSTA  417 (466)
Q Consensus       341 -~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl--~~R~~~~~~na  417 (466)
                       ........|++  |++|++++ | ...|++++++++++.++..........++..+..++..++.+  +..+++..+++
T Consensus       255 ~~~~~~~~~dii--t~sK~l~~-G-~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~  330 (420)
T 2pb2_A          255 AYMHYGVTPDIL--TSAKALGG-G-FPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKR  330 (420)
T ss_dssp             HHHHHTCCCSEE--EECGGGGT-T-SCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHH
T ss_pred             HHHhcCCCCCeE--EecccccC-C-CceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence             11223457877  57899994 4 357888888888776654211111234666666666556554  24456667777


Q ss_pred             HHHHHHHHcC
Q 012296          418 LRMAKILEAH  427 (466)
Q Consensus       418 ~~La~~L~~~  427 (466)
                      +.+.+.|++.
T Consensus       331 ~~l~~~L~~~  340 (420)
T 2pb2_A          331 QQFVQHLQAI  340 (420)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888877654

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.83  E-value=7.4e-19  Score=182.95  Aligned_cols=217  Identities=16%  Similarity=0.175  Sum_probs=147.9

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc---------cCC-CEEEEcCCCCcchHHHHHhhcc-----
Q 012296          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV---------PAG-GHIVTTTDCYRKTRIFIETVLP-----  271 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all---------~~G-d~Vlv~~~~y~~t~~~~~~~l~-----  271 (466)
                      +.++...+|+++|++++|.+++++++||++|+.+++..+.         .+| |+||+.++.|++..........     
T Consensus       104 ~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~  183 (433)
T 1z7d_A          104 FFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCT  183 (433)
T ss_dssp             SEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC------------------
T ss_pred             cCCHHHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCcccc
Confidence            4678889999999999998888999999999999988754         367 9999999999874321111111     


Q ss_pred             ----cCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccc----cHHHHHHHHHhcCCEEEEeCCCCCCCc---
Q 012296          272 ----KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATPLN---  340 (466)
Q Consensus       272 ----~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~----dl~~Ia~la~~~gillIvDea~a~~~~---  340 (466)
                          .....+..++..|+++|+++++..++++|+++..+|++|.+.    ++++|.++|+++|++||+||++.....   
T Consensus       184 ~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~  263 (433)
T 1z7d_A          184 SNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK  263 (433)
T ss_dssp             --------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred             ccCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc
Confidence                011345566667999999999433489999987777889876    799999999999999999999863211   


Q ss_pred             ---ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHHH
Q 012296          341 ---QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNS  415 (466)
Q Consensus       341 ---~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~--~R~~~~~~  415 (466)
                         ........|++  |++|.+++ |...+|++++++++++.+...........++..+.+++..++.+.  ...++..+
T Consensus       264 ~~~~~~~~~~~di~--t~sK~l~~-G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~  340 (433)
T 1z7d_A          264 LLCVHHYNVKPDVI--LLGKALSG-GHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEK  340 (433)
T ss_dssp             SSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             chhhHhcCCCCCEE--EECccccC-CCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence               12223356876  78899995 323579999999888766432111112345666666665665543  24556667


Q ss_pred             HHHHHHHHHHc
Q 012296          416 TALRMAKILEA  426 (466)
Q Consensus       416 na~~La~~L~~  426 (466)
                      +.+.+.+.|++
T Consensus       341 ~~~~l~~~L~~  351 (433)
T 1z7d_A          341 LGGPFLENLKR  351 (433)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777777764

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.83  E-value=4.5e-19  Score=181.21  Aligned_cols=207  Identities=17%  Similarity=0.140  Sum_probs=142.2

Q ss_pred             HHHHHHHhhhCCCcE-EEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHh-hcccCCceEEEeCC-----CCHH
Q 012296          214 VVEEKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVIDP-----ADME  286 (466)
Q Consensus       214 ~Lee~LA~l~g~e~~-l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~-~l~~~Gi~v~~vd~-----~Dle  286 (466)
                      .+++.+++++|.+.. +++++|++|+.+++.+++++||+|+++++.|++....... .....++.+..++.     .|++
T Consensus        75 ~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~  154 (417)
T 3n0l_A           75 LAIERCKKLFNCKFANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYE  154 (417)
T ss_dssp             HHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHH
T ss_pred             HHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHH
Confidence            344588999998655 8889999999999999999999999999999875432111 11123344444432     4899


Q ss_pred             HHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-----ccccccCCcEEEECCccccCc
Q 012296          287 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIGG  361 (466)
Q Consensus       287 ~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-----~~~l~~gaDivv~S~sK~lgg  361 (466)
                      +|++++++.++++|++++|+|  |.+.|+++|.++|++||+++|+|+++..+..     ..+.. +.|+++.|+||+|+|
T Consensus       155 ~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g  231 (417)
T 3n0l_A          155 KVREIAKKEKPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-YAHVVSSTTHKTLRG  231 (417)
T ss_dssp             HHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-TCSEEEEESSTTTCS
T ss_pred             HHHHHHHhcCCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-cceEEEeeCccccCC
Confidence            999999833489999888876  8899999999999999999999999643221     11222 479999999999966


Q ss_pred             cccceeEEEEeC-HHHHHHHHHHHHHh--CCCchHH-HH-HHHHHh--hHHHHHHHHHHHHHHHHHHHHHHc
Q 012296          362 HNDVLAGSISGS-GKLVTQIRNLHHVL--GGALNPN-AA-YLIIRG--MKTLHLRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       362 ~gdv~gG~ivg~-~eli~~l~~~~~~~--G~~lsp~-~a-~l~l~~--L~tl~~R~~~~~~na~~La~~L~~  426 (466)
                      +   ++|+++++ +++++.++......  +...... .+ ..++..  .+.+..+.++..++++.+.+.|++
T Consensus       232 ~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  300 (417)
T 3n0l_A          232 P---RGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD  300 (417)
T ss_dssp             C---SCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C---CeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            5   37999998 78888887654322  1222222 11 112221  245567777888899999999987

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.83  E-value=8.5e-20  Score=188.14  Aligned_cols=214  Identities=14%  Similarity=0.127  Sum_probs=141.8

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc--------cCCCEEEEcCCCCcc-------------hHHHH
Q 012296          210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRK-------------TRIFI  266 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all--------~~Gd~Vlv~~~~y~~-------------t~~~~  266 (466)
                      +..+++++++++++|.+  +.+++++|++|+.+++.+++        ++||+|++..|.|.+             +...+
T Consensus        61 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~  140 (432)
T 3a9z_A           61 DIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPL  140 (432)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHH
Confidence            45689999999999973  56666666799999998876        589877777777754             22333


Q ss_pred             HhhcccCCceEEEeCC------CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcC----------CEEE
Q 012296          267 ETVLPKMGITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG----------AIVC  330 (466)
Q Consensus       267 ~~~l~~~Gi~v~~vd~------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~g----------illI  330 (466)
                      .......|.++..++.      .|+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|          +++|
T Consensus       141 ~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~li  219 (432)
T 3a9z_A          141 EHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPT-TCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVH  219 (432)
T ss_dssp             HHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTT-EEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred             HHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCC-ceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEE
Confidence            3334456888888764      3789999999874 999999999999999999999999999999          9999


Q ss_pred             EeCCCCCCCc-ccccccCCcEEEECCccccCccccceeEEEEeCHHH-HHHHHHH-------HHHhCCCchHHHHHHHHH
Q 012296          331 IDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNL-------HHVLGGALNPNAAYLIIR  401 (466)
Q Consensus       331 vDea~a~~~~-~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~el-i~~l~~~-------~~~~G~~lsp~~a~l~l~  401 (466)
                      +|++|+.+.. ......+.|+++.|+||++| +  . +|++++++++ ...++..       .....++.++...+.+..
T Consensus       220 vDea~~~~~~~~~~~~~~~d~~~~s~~K~~g-~--~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a  295 (432)
T 3a9z_A          220 TDAAQALGKRRVDVEDLGVDFLTIVGHKFYG-P--R-IGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGK  295 (432)
T ss_dssp             EECTTTTTTSCCCHHHHCCSEEEEEGGGTTC-C--S-CEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHH
T ss_pred             EEchhhhCCcccChhhcCCCEEEEehhHhcC-C--c-ceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHH
Confidence            9999876432 22233578999999999885 3  2 6888888765 2222211       111112333333333323


Q ss_pred             hhHH----HHHHHHHHHHHHHHHHHHHHcCC
Q 012296          402 GMKT----LHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       402 ~L~t----l~~R~~~~~~na~~La~~L~~~p  428 (466)
                      .++.    ++...++..++++.+.+.|++++
T Consensus       296 al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  326 (432)
T 3a9z_A          296 AADLVSENCETYEAHMRDIRDYLEERLEAEF  326 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3332    34455666778888888887754

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.83  E-value=2.1e-19  Score=183.07  Aligned_cols=215  Identities=19%  Similarity=0.153  Sum_probs=153.6

Q ss_pred             CchhHHHHH----HHHHhhhCCCcE-EEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCc--eEEEe
Q 012296          208 GNPTTVVVE----EKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI--TATVI  280 (466)
Q Consensus       208 ~np~~~~Le----e~LA~l~g~e~~-l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi--~v~~v  280 (466)
                      +++..+.++    +.+++++|.+.. +++++|++|+.+++.+++++||+|+++++.|+++.... ..+...|.  ....+
T Consensus        63 g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~~~~  141 (407)
T 2dkj_A           63 GCEVIDRVESLAIERAKALFGAAWANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHG-SRVNFSGKLYKVVSY  141 (407)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGT-CTTSHHHHHSEEEEE
T ss_pred             CchHHHHHHHHHHHHHHHHhCCCcceEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchH-HHHHhcCceEEEEec
Confidence            456544555    499999998655 66799999999999999999999999999998753100 11222232  33333


Q ss_pred             C------CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-----ccccccCCc
Q 012296          281 D------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGAD  349 (466)
Q Consensus       281 d------~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-----~~~l~~gaD  349 (466)
                      +      ..|+++|++++++.++++|++++|+||  .+.|+++|.++|+++|+++|+|++|+.+..     ..+.. ..|
T Consensus       142 ~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~d  218 (407)
T 2dkj_A          142 GVRPDTELIDLEEVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAH  218 (407)
T ss_dssp             CCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCS
T ss_pred             CCCcccCccCHHHHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-ccc
Confidence            2      247999999997424899999999997  678999999999999999999999875221     11122 379


Q ss_pred             EEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhC-CCchHHHH---HHHHHh--hHHHHHHHHHHHHHHHHHHH
Q 012296          350 LVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG-GALNPNAA---YLIIRG--MKTLHLRVQQQNSTALRMAK  422 (466)
Q Consensus       350 ivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G-~~lsp~~a---~l~l~~--L~tl~~R~~~~~~na~~La~  422 (466)
                      +++.|+||+++|+   .+|+++++ +++++.++.....+. ++.++...   ..++..  .+.++.+.++..++++.+.+
T Consensus       219 i~~~s~sK~l~g~---~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~  295 (407)
T 2dkj_A          219 VVTSTTHKTLRGP---RGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAE  295 (407)
T ss_dssp             EEEEESSGGGCCC---SCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccCCCC---CceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            9999999999865   36999999 799888876553332 22333222   122222  23456677888889999999


Q ss_pred             HHHcCCCe
Q 012296          423 ILEAHPKV  430 (466)
Q Consensus       423 ~L~~~p~V  430 (466)
                      .|+++ ++
T Consensus       296 ~L~~~-g~  302 (407)
T 2dkj_A          296 ELARR-GY  302 (407)
T ss_dssp             HHHHT-TC
T ss_pred             HHHhC-Cc
Confidence            99887 44

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.83  E-value=6.3e-20  Score=187.29  Aligned_cols=211  Identities=15%  Similarity=0.142  Sum_probs=151.6

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc------C-CCEEEEcCCCCcchHH-HHHhhcccCCce--
Q 012296          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP------A-GGHIVTTTDCYRKTRI-FIETVLPKMGIT--  276 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~------~-Gd~Vlv~~~~y~~t~~-~~~~~l~~~Gi~--  276 (466)
                      +.++..+++++.|++++|.++++++++|++|+.+++..+..      + +++|++.++.|++... .+..    .|.+  
T Consensus        79 ~~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~----~g~~~~  154 (397)
T 2ord_A           79 FWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTA----TGQPKY  154 (397)
T ss_dssp             SEEHHHHHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHH----SBCHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhc----cCChhh
Confidence            45788999999999999988888899999999999988763      5 4789999999976433 2221    2222  


Q ss_pred             ----------EEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc-c---ccHHHHHHHHHhcCCEEEEeCCCCCCCcc-
Q 012296          277 ----------ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR-C---VDVKLVSDLCHKKGAIVCIDGTFATPLNQ-  341 (466)
Q Consensus       277 ----------v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~-v---~dl~~Ia~la~~~gillIvDea~a~~~~~-  341 (466)
                                +..++..|+++|++++++ ++++|++++|+||||. +   .++++|.++|+++|++||+|++|...... 
T Consensus       155 ~~~~~p~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g  233 (397)
T 2ord_A          155 QKPFEPLVPGFEYFEFNNVEDLRRKMSE-DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG  233 (397)
T ss_dssp             HGGGCSCCTTEEEECTTCHHHHHHHCCT-TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred             ccccCCCCCCeeEecCCCHHHHHHHhhc-CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCc
Confidence                      666777799999999987 4999999999999998 4   46899999999999999999998732111 


Q ss_pred             cc---cccC--CcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH--HHHHHHH
Q 012296          342 KA---LSLG--ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQN  414 (466)
Q Consensus       342 ~~---l~~g--aDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~--~R~~~~~  414 (466)
                      .+   ..++  .|++  |++|++++ | .+.|+++++++++ .++..........++..++.+...++.+.  ...++..
T Consensus       234 ~~~~~~~~~~~~d~~--s~sK~~~~-G-~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  308 (397)
T 2ord_A          234 KLFAYQKYGVVPDVL--TTAKGLGG-G-VPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVE  308 (397)
T ss_dssp             SSSHHHHHTCCCSEE--EECGGGGT-T-SCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHH
T ss_pred             cchhhhhhCCCCCee--eeccccCC-C-cCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            11   1223  6866  67899994 4 3568888887766 54321111222346666666555665543  3456667


Q ss_pred             HHHHHHHHHHHcC
Q 012296          415 STALRMAKILEAH  427 (466)
Q Consensus       415 ~na~~La~~L~~~  427 (466)
                      ++++.+.+.|++.
T Consensus       309 ~~~~~l~~~L~~~  321 (397)
T 2ord_A          309 EKGNYLMKKLQEM  321 (397)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7788888877653

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.82  E-value=1.9e-19  Score=186.03  Aligned_cols=214  Identities=12%  Similarity=0.085  Sum_probs=150.1

Q ss_pred             CCchh-HHHHHHHHHhhhCCC-cEEEeCCHH-HHH--HHHHHHHccC------------CCEEEEcCCCCcchHHHHHhh
Q 012296          207 YGNPT-TVVVEEKMSALEGAE-STVIMASGM-SAS--TVMLLALVPA------------GGHIVTTTDCYRKTRIFIETV  269 (466)
Q Consensus       207 ~~np~-~~~Lee~LA~l~g~e-~~l~~sSGs-~Ai--~~al~all~~------------Gd~Vlv~~~~y~~t~~~~~~~  269 (466)
                      |+.+. ..+|++.++++++.+ +.+++++|+ +++  .+++..+.++            ||+|++++|+|.+....+   
T Consensus        72 Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~---  148 (422)
T 3d6k_A           72 YGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTIT---  148 (422)
T ss_dssp             SCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHH---
T ss_pred             CCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHH---
Confidence            33443 678999999999873 455555555 676  5666777666            347999999999866443   


Q ss_pred             cccCCceEEEeCC----CCHHHHHHhhcCCCceEEE-EeCCCCCCcccccHH---HHHHHHH-hcCCEEEEeCCCCC-CC
Q 012296          270 LPKMGITATVIDP----ADMEGLEAALNNNNVSLFF-TESPTNPFLRCVDVK---LVSDLCH-KKGAIVCIDGTFAT-PL  339 (466)
Q Consensus       270 l~~~Gi~v~~vd~----~Dle~Le~ai~~~~tklV~-lesP~NPtG~v~dl~---~Ia~la~-~~gillIvDea~a~-~~  339 (466)
                       +..|.++..++.    .|+++|++++++.++++|+ +++|+||||.+++.+   +|+++|+ ++|+++|+|++|.. .+
T Consensus       149 -~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~  227 (422)
T 3d6k_A          149 -EHFGFEMINVPMTDEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTL  227 (422)
T ss_dssp             -HHHTCEEEEEEEETTEECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBS
T ss_pred             -HHcCCEEEecCCCCCCCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCcccccc
Confidence             345777666543    4799999999764589988 689999999999876   7777787 89999999999863 11


Q ss_pred             -c----cccc--------ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH--
Q 012296          340 -N----QKAL--------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK--  404 (466)
Q Consensus       340 -~----~~~l--------~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~--  404 (466)
                       .    ..++        ..+.++++.|+||+ +++| .+.|++++++++++.+.........+.++....++...++  
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G-lriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~  305 (422)
T 3d6k_A          228 SDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAG-SGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDV  305 (422)
T ss_dssp             SSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTT-SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSH
T ss_pred             CCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcc-cceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCc
Confidence             1    1111        23567999999998 5565 4579999999999999887766655555555444443332  


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHc
Q 012296          405 -----TLHLRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       405 -----tl~~R~~~~~~na~~La~~L~~  426 (466)
                           .+....+.+.++++.+.+.|++
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~l~~~L~~  332 (422)
T 3d6k_A          306 AGLKAHMLKHAASLAPKFERVLEILDS  332 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 2333334455666677676654

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.82  E-value=1.2e-18  Score=178.41  Aligned_cols=215  Identities=14%  Similarity=0.091  Sum_probs=149.5

Q ss_pred             chhHHHHHHHHHhhh-CC-------CcEEE--eCCHHHHHHHHHH--HHccCC-----CEEEEcCCCCcchHHHHHhhcc
Q 012296          209 NPTTVVVEEKMSALE-GA-------ESTVI--MASGMSASTVMLL--ALVPAG-----GHIVTTTDCYRKTRIFIETVLP  271 (466)
Q Consensus       209 np~~~~Lee~LA~l~-g~-------e~~l~--~sSGs~Ai~~al~--all~~G-----d~Vlv~~~~y~~t~~~~~~~l~  271 (466)
                      .+...+|++.+++++ +.       ++.++  +++|++|+.+++.  .++.+|     |+|+++.|.|++....+    .
T Consensus        73 ~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~----~  148 (412)
T 1ajs_A           73 ILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVF----T  148 (412)
T ss_dssp             TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHH----H
T ss_pred             CCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHH----H
Confidence            445678999999887 42       56666  6777799998853  556899     99999999999865433    3


Q ss_pred             cCCce-EEEeCC-------CCHHHHHHhhcCC--CceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCC
Q 012296          272 KMGIT-ATVIDP-------ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP  338 (466)
Q Consensus       272 ~~Gi~-v~~vd~-------~Dle~Le~ai~~~--~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~  338 (466)
                      ..|.+ +..++.       .|+++|++++++.  ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|...
T Consensus       149 ~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~  228 (412)
T 1ajs_A          149 TAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGF  228 (412)
T ss_dssp             HTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTT
T ss_pred             HcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence            45666 666543       2789999988641  3788889999999999975   568999999999999999997654


Q ss_pred             Ccc----c--ccc-----cCCcEEEECCccccCccccceeEEEEe---CHHH----HHHHHHHHHHhCCCchHHHHHHHH
Q 012296          339 LNQ----K--ALS-----LGADLVLHSATKFIGGHNDVLAGSISG---SGKL----VTQIRNLHHVLGGALNPNAAYLII  400 (466)
Q Consensus       339 ~~~----~--~l~-----~gaDivv~S~sK~lgg~gdv~gG~ivg---~~el----i~~l~~~~~~~G~~lsp~~a~l~l  400 (466)
                      ...    .  +..     ...++++.|+||.++++|. +.|++++   ++++    ++.++..........++..++++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  307 (412)
T 1ajs_A          229 ASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNE-RVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVA  307 (412)
T ss_dssp             TTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHH
T ss_pred             cCCcccccchHHHHHhccCCcEEEEEecccccCCCCc-ceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHH
Confidence            321    1  111     1234889999999998774 4688887   8874    444444222222222333333333


Q ss_pred             HhhH----------HHHHHHHHHHHHHHHHHHHHHcCC
Q 012296          401 RGMK----------TLHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       401 ~~L~----------tl~~R~~~~~~na~~La~~L~~~p  428 (466)
                      ..++          .+....++..++++.+.+.|++++
T Consensus       308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (412)
T 1ajs_A          308 RTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALK  345 (412)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3332          345556677788889999998864

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.82  E-value=6.2e-19  Score=180.81  Aligned_cols=220  Identities=17%  Similarity=0.179  Sum_probs=150.4

Q ss_pred             ccccCCCchhHHHHHHHHHhhh-CCC-------cE--EEeCCHHHHHHHH---HHHHccCCCEEEEcCCCCcchHHHHHh
Q 012296          202 FEYGRYGNPTTVVVEEKMSALE-GAE-------ST--VIMASGMSASTVM---LLALVPAGGHIVTTTDCYRKTRIFIET  268 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~-g~e-------~~--l~~sSGs~Ai~~a---l~all~~Gd~Vlv~~~~y~~t~~~~~~  268 (466)
                      +.|+.  .+...+|++.+++++ |.+       +.  +.+.+|+.++.++   +..++++||+|++++|.|.+....   
T Consensus        73 ~~y~~--~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~---  147 (409)
T 4eu1_A           73 MDYAP--VTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESI---  147 (409)
T ss_dssp             CCCCC--TTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHH---
T ss_pred             ccCCC--CCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHH---
Confidence            44542  344568889999875 432       23  3356666777654   345568999999999999986544   


Q ss_pred             hcccCCceEEEeCC-------CCHHHHHHhhc--CCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCC
Q 012296          269 VLPKMGITATVIDP-------ADMEGLEAALN--NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFA  336 (466)
Q Consensus       269 ~l~~~Gi~v~~vd~-------~Dle~Le~ai~--~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a  336 (466)
                       ++..|.++..++.       .|+++|+++++  +.+++++++++|+||||.+.+   +++|+++|+++|+++|+|++|.
T Consensus       148 -~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~  226 (409)
T 4eu1_A          148 -FAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQ  226 (409)
T ss_dssp             -HHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             -HHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccc
Confidence             3456778777753       27899999986  223678888999999999997   4559999999999999999987


Q ss_pred             CCCccc------c---c-c-cCCcEEEECCccccCccccceeEE---EEeCHH----HHHHHHHHHHHhCCCchHHHHHH
Q 012296          337 TPLNQK------A---L-S-LGADLVLHSATKFIGGHNDVLAGS---ISGSGK----LVTQIRNLHHVLGGALNPNAAYL  398 (466)
Q Consensus       337 ~~~~~~------~---l-~-~gaDivv~S~sK~lgg~gdv~gG~---ivg~~e----li~~l~~~~~~~G~~lsp~~a~l  398 (466)
                      ......      +   + . ....+++.|+||.++.+|.. .|+   ++++++    +++.++..........++..+++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r-iG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  305 (409)
T 4eu1_A          227 GFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHR-CGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWV  305 (409)
T ss_dssp             TTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGC-CEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             ccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCC-ceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHH
Confidence            643221      1   1 1 12348899999999988754 566   467777    55666554433333334444443


Q ss_pred             HHHhh----------HHHHHHHHHHHHHHHHHHHHHHcCC
Q 012296          399 IIRGM----------KTLHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       399 ~l~~L----------~tl~~R~~~~~~na~~La~~L~~~p  428 (466)
                      +...+          +.+..+.++..++++.+.+.|++++
T Consensus       306 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  345 (409)
T 4eu1_A          306 VSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACG  345 (409)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33332          2345566777888899999998764

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.82  E-value=4.2e-19  Score=187.04  Aligned_cols=213  Identities=18%  Similarity=0.203  Sum_probs=156.3

Q ss_pred             hHHHHHHHHHhhhCCCcEEEe-CCHHHHHHHHHHHH----ccCCC-----EEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          211 TTVVVEEKMSALEGAESTVIM-ASGMSASTVMLLAL----VPAGG-----HIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       211 ~~~~Lee~LA~l~g~e~~l~~-sSGs~Ai~~al~al----l~~Gd-----~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      ..+++++.+++++|.+..+++ ++|++|+.+++.++    .++||     +|+++.+.|+.+...    +...|++++.+
T Consensus       108 l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~----~~~~G~~vv~v  183 (474)
T 1wyu_B          108 LMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPAT----ASMAGYQVREI  183 (474)
T ss_dssp             HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHH----HHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHH----HHHCCCEEEEe
Confidence            467889999999998766655 67778888766554    36888     999999999876643    34568888888


Q ss_pred             CCC-----CHHHHHHhhcCCCceEEEEeCCCCCCccc-ccHHHHHHHHHhcCCEEEEeCCCCCCC--cccccccCCcEEE
Q 012296          281 DPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATPL--NQKALSLGADLVL  352 (466)
Q Consensus       281 d~~-----Dle~Le~ai~~~~tklV~lesP~NPtG~v-~dl~~Ia~la~~~gillIvDea~a~~~--~~~~l~~gaDivv  352 (466)
                      +..     |+++|+++++++ +++|++++| ||+|.+ .++++|+++|+++|+++|+|++++.+.  ...+..+|+|+++
T Consensus       184 ~~~~~~~~d~~~L~~~i~~~-t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~  261 (474)
T 1wyu_B          184 PSGPEGEVDLEALKRELGPH-VAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVH  261 (474)
T ss_dssp             CBCTTSSBCHHHHHHHCSTT-EEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEE
T ss_pred             cCCCCCCcCHHHHHHhhCCC-ceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEE
Confidence            753     899999999875 999999998 589998 699999999999999999999985433  2344556899999


Q ss_pred             ECCccccCcc-c--cceeEEEEeCHHHHHHHHH-HH------------------HHhCCCchHH---HHHHHHH--hhHH
Q 012296          353 HSATKFIGGH-N--DVLAGSISGSGKLVTQIRN-LH------------------HVLGGALNPN---AAYLIIR--GMKT  405 (466)
Q Consensus       353 ~S~sK~lgg~-g--dv~gG~ivg~~eli~~l~~-~~------------------~~~G~~lsp~---~a~l~l~--~L~t  405 (466)
                      .|+||+|+++ |  ...+|++++++++++.+.. ..                  .......++.   .++..+.  +.+.
T Consensus       262 ~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~  341 (474)
T 1wyu_B          262 LNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEG  341 (474)
T ss_dssp             CCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHH
Confidence            9999999866 2  2346899999887766541 00                  0000112222   2232222  3345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCe
Q 012296          406 LHLRVQQQNSTALRMAKILEAHPKV  430 (466)
Q Consensus       406 l~~R~~~~~~na~~La~~L~~~p~V  430 (466)
                      +..+.++..++++++.+.|++. ++
T Consensus       342 l~~~~~~~~~~~~~l~~~L~~~-g~  365 (474)
T 1wyu_B          342 LKKAAALAVLNARYLKELLKEK-GY  365 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc-Cc
Confidence            6666788889999999999886 44

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.82  E-value=2.1e-18  Score=177.80  Aligned_cols=211  Identities=12%  Similarity=0.104  Sum_probs=143.5

Q ss_pred             HHHHHHHHHhhhCC--------C--cEEEeCCHHHHHHHH--HHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEE
Q 012296          212 TVVVEEKMSALEGA--------E--STVIMASGMSASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (466)
Q Consensus       212 ~~~Lee~LA~l~g~--------e--~~l~~sSGs~Ai~~a--l~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~  279 (466)
                      ..++++.+++++..        +  +.+++++|++|+.++  +.+++.+||+|++++|.|.+....    +...|.++..
T Consensus        94 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~----~~~~g~~~~~  169 (420)
T 4f4e_A           94 IAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRAL----FDMAGFEVVA  169 (420)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHH----HHHTTCCEEE
T ss_pred             cHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHH----HHHcCCeEEE
Confidence            45666666666522        2  344455556999988  456789999999999999986543    3446777766


Q ss_pred             eCC----C---CHHHHHHhhcC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----c
Q 012296          280 IDP----A---DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----K  342 (466)
Q Consensus       280 vd~----~---Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----~  342 (466)
                      ++.    .   |+++|++++++  .+++++++++|+||||.+.+   +++|+++|+++|+++|+|++|......     .
T Consensus       170 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~  249 (420)
T 4f4e_A          170 YPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAA  249 (420)
T ss_dssp             EECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGH
T ss_pred             eeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhH
Confidence            654    2   79999999973  24899999999999999975   668899999999999999998654321     0


Q ss_pred             c-----cccCCcEEEECCccccCccccceeEEEE---eCHHHHHHHH----HHHHHhCCCchHHHHHHHH---Hh-----
Q 012296          343 A-----LSLGADLVLHSATKFIGGHNDVLAGSIS---GSGKLVTQIR----NLHHVLGGALNPNAAYLII---RG-----  402 (466)
Q Consensus       343 ~-----l~~gaDivv~S~sK~lgg~gdv~gG~iv---g~~eli~~l~----~~~~~~G~~lsp~~a~l~l---~~-----  402 (466)
                      .     ...+.++++.|+||.++.+|.. .|+++   .++++++++.    ..........+...+.++.   ..     
T Consensus       250 ~~~~~~~~~~~~i~~~S~SK~~~~~G~R-iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  328 (420)
T 4f4e_A          250 AVRLFAAANLNVFVSSSFSKSFSLYGER-VGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRA  328 (420)
T ss_dssp             HHHHHHHTTCCEEEEEECTTTTTCGGGC-EEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHhcCCCEEEEEeCCccCcCcCCC-cEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHH
Confidence            1     1235679999999999987754 56654   3566665432    2211111222333332222   21     


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          403 --MKTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       403 --L~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                        .+.+....++..++++.+.+.|+++
T Consensus       329 ~~~~~~~~~~~~~~~~~~~l~~~L~~~  355 (420)
T 4f4e_A          329 SWVQELGEMRDRIRAMRNGLVERLKAA  355 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              2335556677788899999999876

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.81  E-value=2.3e-18  Score=174.95  Aligned_cols=215  Identities=13%  Similarity=0.085  Sum_probs=148.5

Q ss_pred             chhHHHHHHHHHhhh---C-----CCcEEE--eCCHHHHHHHHHHHH--ccCCCEEEEcCCCCcchHHHHHhhcccCCce
Q 012296          209 NPTTVVVEEKMSALE---G-----AESTVI--MASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (466)
Q Consensus       209 np~~~~Lee~LA~l~---g-----~e~~l~--~sSGs~Ai~~al~al--l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~  276 (466)
                      .+...+|++.+++++   +     .++.++  +++|++|+.+++..+  +.+||+|+++.|.|++....    +...|.+
T Consensus        68 ~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~----~~~~g~~  143 (396)
T 2q7w_A           68 IDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSV----FNSAGLE  143 (396)
T ss_dssp             TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHH----HHHTTCE
T ss_pred             CCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHH----HHHcCCc
Confidence            445678889999887   2     245555  666679999988765  46999999999999986543    3446777


Q ss_pred             EEEeCC---C----CHHHHHHhhcCC--CceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc---
Q 012296          277 ATVIDP---A----DMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---  341 (466)
Q Consensus       277 v~~vd~---~----Dle~Le~ai~~~--~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~---  341 (466)
                      +..++.   .    |+++|++++++.  +++++++++|+||||.+.+   +++|+++|+++|+++|+|++|......   
T Consensus       144 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~  223 (396)
T 2q7w_A          144 VREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEE  223 (396)
T ss_dssp             EEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHH
T ss_pred             eEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccc
Confidence            776654   2    799999999753  3788999999999999985   568999999999999999998754321   


Q ss_pred             c--cc----cc-CCcEEEECCccccCccccceeEEEEe---CHH----HHHHHHHHHHHhCCCchHHHHHHHHHhhH---
Q 012296          342 K--AL----SL-GADLVLHSATKFIGGHNDVLAGSISG---SGK----LVTQIRNLHHVLGGALNPNAAYLIIRGMK---  404 (466)
Q Consensus       342 ~--~l----~~-gaDivv~S~sK~lgg~gdv~gG~ivg---~~e----li~~l~~~~~~~G~~lsp~~a~l~l~~L~---  404 (466)
                      .  +.    .. ..++++.|+||.++.+|. +.|++++   +++    +++.+...........++..+.++...++   
T Consensus       224 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  302 (396)
T 2q7w_A          224 DAEGLRAFAAMHKELIVASSYSXNFGLYNE-RVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDA  302 (396)
T ss_dssp             HTHHHHHHHHHCSCEEEEEECTTTTTCGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHH
T ss_pred             hhHHHHHHHhcCCcEEEEEecccccccccc-ccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChh
Confidence            1  11    11 346889999999997764 4677775   564    44444433222222334544444443332   


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHHcCC
Q 012296          405 -------TLHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       405 -------tl~~R~~~~~~na~~La~~L~~~p  428 (466)
                             .++...++..++++.+.+.|+++.
T Consensus       303 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  333 (396)
T 2q7w_A          303 LRAIWEQELTDMRQRIQRMRQLFVNTLQEKG  333 (396)
T ss_dssp             HHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                   334445566788888999998764

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.81  E-value=8.4e-19  Score=182.38  Aligned_cols=210  Identities=19%  Similarity=0.198  Sum_probs=152.7

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCC-cchHHHHHhhcccCCceEEEeCC----
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCY-RKTRIFIETVLPKMGITATVIDP----  282 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y-~~t~~~~~~~l~~~Gi~v~~vd~----  282 (466)
                      .++...+|++.|+++++.++++++++|++|+.+++.+++++||  +++.+.| +.+..    .+...|.++..++.    
T Consensus        73 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~----~~~~~G~~~~~v~~~~~~  146 (456)
T 2ez2_A           73 GSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRY----HQEKNGAVFVDIVRDEAH  146 (456)
T ss_dssp             SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHH----HHHHTTCEEEECBCGGGG
T ss_pred             cChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhHH----HHHHcCCEEEEecccccc
Confidence            4678899999999999999999999999999999999999999  7778888 44332    23456777776642    


Q ss_pred             -----------CCHHHHHHhhcCCC---ceEEEEeCCCC-CCccccc---HHHHHHHHHhcCCEEEEeCCCCCC------
Q 012296          283 -----------ADMEGLEAALNNNN---VSLFFTESPTN-PFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP------  338 (466)
Q Consensus       283 -----------~Dle~Le~ai~~~~---tklV~lesP~N-PtG~v~d---l~~Ia~la~~~gillIvDea~a~~------  338 (466)
                                 .|+++|+++++++.   +++|++++|+| |+|.+.+   +++|.++|++||++||+|++|+.+      
T Consensus       147 ~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~  226 (456)
T 2ez2_A          147 DAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIK  226 (456)
T ss_dssp             CTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHH
T ss_pred             cccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEcccccccccccc
Confidence                       27899999997641   38999999999 9999887   999999999999999999997642      


Q ss_pred             -----Ccccc-------cccCCcEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHh-C----CCch--HHHHHH
Q 012296          339 -----LNQKA-------LSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVL-G----GALN--PNAAYL  398 (466)
Q Consensus       339 -----~~~~~-------l~~gaDivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~-G----~~ls--p~~a~l  398 (466)
                           +....       .....|+++.|++|+++ .+  ++|++++ +++++++++..+... |    ...+  ...+ +
T Consensus       227 ~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~-~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~  302 (456)
T 2ez2_A          227 EQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL-VN--IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEA-M  302 (456)
T ss_dssp             HHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC-CS--SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHH-H
T ss_pred             ccccccCCcchhhhhhhhcccCCEEEEeCcccCC-CC--ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHH-H
Confidence                 11111       12236888888888765 43  4799998 688888877655432 1    1112  2222 1


Q ss_pred             HHHhhHHH-HHHHHHHHHHHHHHHHHHHcC
Q 012296          399 IIRGMKTL-HLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       399 ~l~~L~tl-~~R~~~~~~na~~La~~L~~~  427 (466)
                      ++..++.+ ...+++..++.+.+.+.|++.
T Consensus       303 a~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  332 (456)
T 2ez2_A          303 AIGLREAMQYEYIEHRVKQVRYLGDKLKAA  332 (456)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence            22223333 355666677788888888763

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.81  E-value=1.7e-18  Score=176.59  Aligned_cols=213  Identities=15%  Similarity=0.192  Sum_probs=155.0

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEe-CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCC--ceEEEeC-----
Q 012296          210 PTTVVVEEKMSALEGAESTVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG--ITATVID-----  281 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e~~l~~-sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~G--i~v~~vd-----  281 (466)
                      ...+++++.+++++|.++.+++ +||++|+.+++. ++.+||+||+.++.|++..  +...+...|  .++.+++     
T Consensus        35 ~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~-~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~g  111 (379)
T 3ke3_A           35 EVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVAR-QLTIDEDCLIIRNGWFSYR--WTQILEKGKFAKSSTVLTAERTE  111 (379)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH-HHCTTCEEEEEECSHHHHH--HHHHHHHHCCSSEEEEEECEESS
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHH-hCCCCCeEEEEeCCchhHH--HHHHHHHhCCCCceEEEeccccc
Confidence            5677889999999998765555 688899998874 4579999999999988742  212333334  3554443     


Q ss_pred             ---------CCCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCc
Q 012296          282 ---------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGAD  349 (466)
Q Consensus       282 ---------~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaD  349 (466)
                               ..|++++++++++.++++|++.+++|++|.+.|   +++|.++|+++|+++|+|++++.........+|+|
T Consensus       112 ~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~g~~~~~~~~~~~d  191 (379)
T 3ke3_A          112 DTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIASGCVWLDMKELGID  191 (379)
T ss_dssp             CCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTCTTCCCCHHHHTCS
T ss_pred             cccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEecccCCccccccccCCC
Confidence                     358999999995424899999999999999999   99999999999999999999873333444456899


Q ss_pred             EEEECCccccCccccceeEEEEeCHHHHHHHHHHH-----------------HHhC-----CCchHHHHHHHHHhhHH--
Q 012296          350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----------------HVLG-----GALNPNAAYLIIRGMKT--  405 (466)
Q Consensus       350 ivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~-----------------~~~G-----~~lsp~~a~l~l~~L~t--  405 (466)
                      +++.|++|+++++.  .+|++++++++++.+....                 ...|     .+.++...+.+...++.  
T Consensus       192 ~~~~s~~K~l~~~~--g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~  269 (379)
T 3ke3_A          192 VLISAPQKGWSSTP--CAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAK  269 (379)
T ss_dssp             EEEECTTTTTCSCC--CEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred             EEEecchhhcCCCC--ceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999998875  3689999999888765310                 0011     23444433333333332  


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHcC
Q 012296          406 ---LHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       406 ---l~~R~~~~~~na~~La~~L~~~  427 (466)
                         ++.+.++..++++.+.+.|+++
T Consensus       270 ~~g~~~~~~~~~~l~~~l~~~l~~~  294 (379)
T 3ke3_A          270 EIGFDILRDAQWELGNRVRKVLTDK  294 (379)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHc
Confidence               3455667778888898988876

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.81  E-value=7.5e-19  Score=187.28  Aligned_cols=222  Identities=14%  Similarity=0.156  Sum_probs=159.2

Q ss_pred             CchhHHHHHH----HHHhhhCCC----cEEEeCCHHHHHHHHHHHHcc--------------CCCEEEEcCCCCcchHHH
Q 012296          208 GNPTTVVVEE----KMSALEGAE----STVIMASGMSASTVMLLALVP--------------AGGHIVTTTDCYRKTRIF  265 (466)
Q Consensus       208 ~np~~~~Lee----~LA~l~g~e----~~l~~sSGs~Ai~~al~all~--------------~Gd~Vlv~~~~y~~t~~~  265 (466)
                      ..|...++|+    ++++++|.+    ..+++++|++|+..++.++..              +++.|+++...|.+....
T Consensus       129 ~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~  208 (511)
T 3vp6_A          129 IAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKA  208 (511)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHH
Confidence            5676666655    556677764    567788888998888877654              467899999999886644


Q ss_pred             HHhhcccCCc---eEEEeCCC-----CHHHHHHhhcCCC-----ceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEe
Q 012296          266 IETVLPKMGI---TATVIDPA-----DMEGLEAALNNNN-----VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID  332 (466)
Q Consensus       266 ~~~~l~~~Gi---~v~~vd~~-----Dle~Le~ai~~~~-----tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvD  332 (466)
                      +    ...|+   +++.++.+     |+++|+++|++.+     +++|++++++|++|.+.|+++|+++|++||+++++|
T Consensus       209 ~----~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD  284 (511)
T 3vp6_A          209 G----AALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVD  284 (511)
T ss_dssp             H----HHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEE
T ss_pred             H----HHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEE
Confidence            4    33444   67666643     8999999997531     789999999999999999999999999999999999


Q ss_pred             CCCCCCCcccc-----c--ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH-HHh-----------------
Q 012296          333 GTFATPLNQKA-----L--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HVL-----------------  387 (466)
Q Consensus       333 ea~a~~~~~~~-----l--~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~-~~~-----------------  387 (466)
                      ++|+.+....+     +  ..++|+++.++||+++++.+. +++++.+++++....... ..+                 
T Consensus       285 ~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~-g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~  363 (511)
T 3vp6_A          285 AAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQC-SAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKA  363 (511)
T ss_dssp             ETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCC-EEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGS
T ss_pred             ccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCe-EEEEEeCHHHHHHHhccCCccccCcccccccccCccCCC
Confidence            99887544211     1  125799999999999887532 344444555555432110 000                 


Q ss_pred             ---CCCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe
Q 012296          388 ---GGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVH  434 (466)
Q Consensus       388 ---G~~lsp~~a~l~l~--~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~  434 (466)
                         +.....+..|.+++  +.+.+..+++++.++++++.+.|+++|+++.+.
T Consensus       364 ~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~  415 (511)
T 3vp6_A          364 IQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVF  415 (511)
T ss_dssp             SCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESS
T ss_pred             CCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence               11123344555443  567788899999999999999999998876544

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.81  E-value=1.1e-18  Score=180.28  Aligned_cols=212  Identities=11%  Similarity=0.107  Sum_probs=144.5

Q ss_pred             hhHHHHHHHHHhhh----CC--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCC---------
Q 012296          210 PTTVVVEEKMSALE----GA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG---------  274 (466)
Q Consensus       210 p~~~~Lee~LA~l~----g~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~G---------  274 (466)
                      ....+|++.+++++    +.  ++.++++++++++.+ +..++++||+|++++|.|++....+.. ....+         
T Consensus        98 ~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~-l~~l~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~~~  175 (432)
T 3ei9_A           98 QGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISR-LQVMFGSNVTIAVQDPSYPAYVDSSVI-MGQTGQFNTDVQKY  175 (432)
T ss_dssp             TCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHH-HHHHHCTTCCEEEEESCCTHHHHHHHH-HTCSCCEETTTTEE
T ss_pred             CCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHH-HHHHcCCCCEEEEeCCCCHHHHHHHHH-cCCccccccccccc
Confidence            44578899999885    44  345554555578776 578889999999999999987655532 22212         


Q ss_pred             ceEEEeCCCCH----HHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----cc
Q 012296          275 ITATVIDPADM----EGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA  343 (466)
Q Consensus       275 i~v~~vd~~Dl----e~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~~  343 (466)
                      .++.+++..+.    .++++  .+ ++++|++++|+||||.+.+   +++|+++|+++|++||+|++|+.....    ..
T Consensus       176 ~~~~~~~~~~~~~~~~~l~~--~~-~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~  252 (432)
T 3ei9_A          176 GNIEYMRCTPENGFFPDLST--VG-RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSI  252 (432)
T ss_dssp             TTCEEEECCGGGTTSCCGGG--CC-CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSG
T ss_pred             CceEEeccCcccCCcCChhh--CC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCCh
Confidence            23444433211    12222  23 4899999999999999986   667777799999999999998743211    11


Q ss_pred             c----ccCCcEEEECCccccCccccceeEEEEeCHHH--------HHHHHHHHHHhCCCchHHHHHHHHH-----hhHHH
Q 012296          344 L----SLGADLVLHSATKFIGGHNDVLAGSISGSGKL--------VTQIRNLHHVLGGALNPNAAYLIIR-----GMKTL  406 (466)
Q Consensus       344 l----~~gaDivv~S~sK~lgg~gdv~gG~ivg~~el--------i~~l~~~~~~~G~~lsp~~a~l~l~-----~L~tl  406 (466)
                      .    ..+.++++.|+||.+|.+|. +.|++++++++        ++.+...........++....++..     +.+++
T Consensus       253 ~~~~~~~~~~i~~~S~SK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  331 (432)
T 3ei9_A          253 FEIPGAEEVAMETASFSNYAGFTGV-RLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAM  331 (432)
T ss_dssp             GGSTTGGGTEEEEEESHHHHCTTTT-CCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHH
T ss_pred             hhcCCCCCeEEEEecchhccCCccc-ceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHH
Confidence            1    12457999999999997763 57899988887        6777665544444444444333322     33456


Q ss_pred             HHHHHHHHHHHHHHHHHHHcC
Q 012296          407 HLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       407 ~~R~~~~~~na~~La~~L~~~  427 (466)
                      ..+.+++.++++.+.+.|+++
T Consensus       332 ~~~~~~~~~~~~~l~~~L~~~  352 (432)
T 3ei9_A          332 HKVIGFYKENTNIIIDTFTSL  352 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHC
Confidence            677788889999999999876

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.81  E-value=6.5e-19  Score=184.68  Aligned_cols=210  Identities=14%  Similarity=0.141  Sum_probs=153.0

Q ss_pred             hHHHHHHHHHhhhCCCc-EEEeCCHH-HHHHHHHHHHcc--CCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC----
Q 012296          211 TTVVVEEKMSALEGAES-TVIMASGM-SASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (466)
Q Consensus       211 ~~~~Lee~LA~l~g~e~-~l~~sSGs-~Ai~~al~all~--~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----  282 (466)
                      ..+++++++++++|.+. ++++++|+ .++.+++.++..  +|++||++++.|.+....    +...|++++.++.    
T Consensus       134 ~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~----~~~~G~~~~~v~~~~~~  209 (456)
T 2z67_A          134 LTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKA----VSFVGMNMRLVETVLDG  209 (456)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHH----HHHTTCEEEEECCEEET
T ss_pred             HHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHH----HHHcCCCceEEEEeccC
Confidence            45678999999999864 56666677 566656665543  678899999999885533    3446888877653    


Q ss_pred             ----CCHHHHHHhh-cC---CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-cccc---cc--CC
Q 012296          283 ----ADMEGLEAAL-NN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKAL---SL--GA  348 (466)
Q Consensus       283 ----~Dle~Le~ai-~~---~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l---~~--ga  348 (466)
                          .|+++|+++| ++   .++.+|++++|+||+|.+.|+++|.++|+++|+++++|++|+.... ..+.   .+  ++
T Consensus       210 ~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~  289 (456)
T 2z67_A          210 DRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRV  289 (456)
T ss_dssp             TEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCC
T ss_pred             CCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCC
Confidence                3799999999 42   2478898999999999999999999999999999999999875433 1111   12  79


Q ss_pred             cEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCC--chHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA--LNPNAAYLIIRG--MKTLHLRVQQQNSTALRMAKI  423 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~--lsp~~a~l~l~~--L~tl~~R~~~~~~na~~La~~  423 (466)
                      |+++.|+||+++++.  .+|+++. ++++++.+...  ..|..  .....++.++..  .+.+..++++..++++++.+.
T Consensus       290 D~~~~s~hK~~~~p~--g~G~l~~~~~~~~~~l~~~--~~g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~  365 (456)
T 2z67_A          290 DAVVSSSDKNLLTPI--GGGLVYSTDAEFIKEISLS--YPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDEL  365 (456)
T ss_dssp             SEEEEEHHHHHCCCS--SCEEEEESCHHHHHHHHTT--SCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCcCCCC--CeEEEEEcCHHHHhhcCcC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999977664  4688888 57787776322  22321  123334444433  345667778888999999999


Q ss_pred             HHcCC
Q 012296          424 LEAHP  428 (466)
Q Consensus       424 L~~~p  428 (466)
                      |++++
T Consensus       366 L~~~~  370 (456)
T 2z67_A          366 LNDLS  370 (456)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            98874

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.81  E-value=3.4e-18  Score=175.22  Aligned_cols=214  Identities=11%  Similarity=0.086  Sum_probs=146.7

Q ss_pred             hhHHHHHHHHHhhh-C-------CCcEEE--eCCHHHHHHHH--HHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceE
Q 012296          210 PTTVVVEEKMSALE-G-------AESTVI--MASGMSASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA  277 (466)
Q Consensus       210 p~~~~Lee~LA~l~-g-------~e~~l~--~sSGs~Ai~~a--l~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v  277 (466)
                      ....++++.+++++ +       .++.++  +++|++|+.++  +..++.+||+|++++|.|.+....    +...|.++
T Consensus        73 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~  148 (412)
T 1yaa_A           73 TGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAI----FENQGLKT  148 (412)
T ss_dssp             TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHH----HHTTTCCE
T ss_pred             CCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHH----HHHcCceE
Confidence            44667888888877 3       245666  66677898887  345567999999999999986543    34457776


Q ss_pred             EEeCC-------CCHHHHHHhhcCC--CceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----
Q 012296          278 TVIDP-------ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----  341 (466)
Q Consensus       278 ~~vd~-------~Dle~Le~ai~~~--~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----  341 (466)
                      ..++.       .|+++|++++++.  ++.++++++|+||||.+++   +++|+++|+++|+++|+|++|......    
T Consensus       149 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~  228 (412)
T 1yaa_A          149 ATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDK  228 (412)
T ss_dssp             EEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHH
T ss_pred             EEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccc
Confidence            66654       3789999988653  2455555999999999975   667899999999999999998643221    


Q ss_pred             c--cc----ccC----CcEEEECCccccCccccceeEEEE--e-----CHH----HHHHHHHHHHHhCCCchHHHHHHHH
Q 012296          342 K--AL----SLG----ADLVLHSATKFIGGHNDVLAGSIS--G-----SGK----LVTQIRNLHHVLGGALNPNAAYLII  400 (466)
Q Consensus       342 ~--~l----~~g----aDivv~S~sK~lgg~gdv~gG~iv--g-----~~e----li~~l~~~~~~~G~~lsp~~a~l~l  400 (466)
                      .  ++    ..+    .++++.|+||.++++|. +.|+++  +     +++    ++++++..........++...+++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Gl-riG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~  307 (412)
T 1yaa_A          229 DAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGE-RVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVA  307 (412)
T ss_dssp             HTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGG-CEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred             hhHHHHHHHhcCCCCcceEEEeccCCCCCCcCC-cceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHH
Confidence            1  11    123    46889999999998774 467777  6     566    6777766433322233344333333


Q ss_pred             HhhH----------HHHHHHHHHHHHHHHHHHHHHcCC
Q 012296          401 RGMK----------TLHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       401 ~~L~----------tl~~R~~~~~~na~~La~~L~~~p  428 (466)
                      ..++          .+....++..++++.+.+.|++++
T Consensus       308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (412)
T 1yaa_A          308 KLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLG  345 (412)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3332          345556667788888989888764

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.81  E-value=3.5e-18  Score=173.62  Aligned_cols=213  Identities=12%  Similarity=0.058  Sum_probs=145.3

Q ss_pred             hHHHHHHHHHhhhCC--------C--cEEEeCCHHHHHHHHH--HHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEE
Q 012296          211 TTVVVEEKMSALEGA--------E--STVIMASGMSASTVML--LALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (466)
Q Consensus       211 ~~~~Lee~LA~l~g~--------e--~~l~~sSGs~Ai~~al--~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~  278 (466)
                      ...++++.++++++.        +  +.+++++|++|+.+++  .+++++||+|+++.|+|.+....    ++..|.++.
T Consensus        71 g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~  146 (397)
T 3fsl_A           71 GLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAI----FAGAGFEVS  146 (397)
T ss_dssp             CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHH----HHHTTCCEE
T ss_pred             chHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHH----HHHcCCceE
Confidence            345677777776532        3  3445555559998884  46689999999999999986543    345677777


Q ss_pred             EeCC----C---CHHHHHHhhcC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----
Q 012296          279 VIDP----A---DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----  341 (466)
Q Consensus       279 ~vd~----~---Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----  341 (466)
                      .++.    .   |+++|++++++  .+++++++++|+||||.+.+   +++|+++|+++|+++|+|++|......     
T Consensus       147 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~  226 (397)
T 3fsl_A          147 TYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDA  226 (397)
T ss_dssp             EECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGG
T ss_pred             EEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCccccc
Confidence            7765    2   79999999973  24899999999999999975   558999999999999999998754321     


Q ss_pred             cc-----cccCCcEEEECCccccCccccceeEEEEe---CHHHHHHHHHH-HH---HhCCCchHHHHHHH---HHh----
Q 012296          342 KA-----LSLGADLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRNL-HH---VLGGALNPNAAYLI---IRG----  402 (466)
Q Consensus       342 ~~-----l~~gaDivv~S~sK~lgg~gdv~gG~ivg---~~eli~~l~~~-~~---~~G~~lsp~~a~l~---l~~----  402 (466)
                      ..     ...+.++++.|+||.++.+|. +.|++++   ++++++++... ..   ......+...+..+   +..    
T Consensus       227 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  305 (397)
T 3fsl_A          227 YAIRAIASAGLPALVSNSFSKIFSLYGE-RVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALK  305 (397)
T ss_dssp             HHHHHHHHTTCCEEEEEECTTTTTCGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHhcCCCEEEEecccccccCcCC-CeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHH
Confidence            11     123456899999999997764 4677653   56666544322 11   11112122222221   221    


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012296          403 ---MKTLHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       403 ---L~tl~~R~~~~~~na~~La~~L~~~p  428 (466)
                         .+.+..+.++..++++.+.+.|++++
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  334 (397)
T 3fsl_A          306 ASWLKEVEEMRTRILAMRQELVKVLSTEM  334 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               23455666777888999999998764

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.81  E-value=5.9e-19  Score=181.18  Aligned_cols=206  Identities=12%  Similarity=0.121  Sum_probs=143.5

Q ss_pred             HHHHHHHHhhhC-------CCcEEEeCCHH-HHHHHHHHHHccCCC----EEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          213 VVVEEKMSALEG-------AESTVIMASGM-SASTVMLLALVPAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       213 ~~Lee~LA~l~g-------~e~~l~~sSGs-~Ai~~al~all~~Gd----~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      .+|++.+|++++       .++.+++++|+ +++.+++.+++++||    +|++++|+|......+    +..|.++..+
T Consensus        71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~~  146 (391)
T 3bwn_A           71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEET----TYVRSGMYKW  146 (391)
T ss_dssp             HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHH----HTTCBTTEEE
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHH----HHcCCeEEEe
Confidence            789999999876       23467777776 899999999999999    9999999999866444    3455554444


Q ss_pred             CCCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccccc--ccCCcEEEECCccc
Q 012296          281 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKAL--SLGADLVLHSATKF  358 (466)
Q Consensus       281 d~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l--~~gaDivv~S~sK~  358 (466)
                      +. |.+.++   .+ ++++|++++|+||||.+++  +|++.++.+++++|+|++|..+. ..++  ..+.++++.|+||.
T Consensus       147 ~~-d~~~l~---~~-~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~-~~~l~~~~~~~i~~~S~SK~  218 (391)
T 3bwn_A          147 EG-DAWGFD---KK-GPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPH-YTPITRRQDHDIMLFTFSKI  218 (391)
T ss_dssp             EE-ESTTCC---CC-SCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTT-TSCCCCCBCCSEEEEEHHHH
T ss_pred             cC-CHHHcC---CC-CCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCC-CCccccCCCCeEEEEechhh
Confidence            32 223332   23 4899999999999999986  45443233349999999987421 1112  34678999999999


Q ss_pred             cCccccceeEEEEe-CHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH--------------HHHHHHHHHHHHHHHHHHH
Q 012296          359 IGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK--------------TLHLRVQQQNSTALRMAKI  423 (466)
Q Consensus       359 lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~--------------tl~~R~~~~~~na~~La~~  423 (466)
                      ++.+|. +.|++++ ++++++++...+.....+.+.....++...++              .+....+...++++.+.+.
T Consensus       219 ~g~~Gl-RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  297 (391)
T 3bwn_A          219 TGHAGS-RIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREV  297 (391)
T ss_dssp             HSCGGG-CEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcc-ceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            998874 4688886 88999988887664334444444433333333              3444556677888999999


Q ss_pred             HHcCCCeE
Q 012296          424 LEAHPKVK  431 (466)
Q Consensus       424 L~~~p~V~  431 (466)
                      |+++|++.
T Consensus       298 L~~~~~~~  305 (391)
T 3bwn_A          298 VKESDAFT  305 (391)
T ss_dssp             HHTCSSEE
T ss_pred             HHhCCCcc
Confidence            99987653

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.80  E-value=2.2e-18  Score=178.60  Aligned_cols=225  Identities=13%  Similarity=0.073  Sum_probs=152.6

Q ss_pred             ccccCCCchhHHHHHHHHHhhh--CC-CcEEEeCCHHHHHHHHHHHH--ccCCCEEEEcCCCCcchHHHHHhhccc----
Q 012296          202 FEYGRYGNPTTVVVEEKMSALE--GA-ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPK----  272 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~--g~-e~~l~~sSGs~Ai~~al~al--l~~Gd~Vlv~~~~y~~t~~~~~~~l~~----  272 (466)
                      +.+.++.++...+|+++|++++  +. ++++++++|++|+..++..+  ..++++||+.++.|++...........    
T Consensus        78 ~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~  157 (439)
T 3dxv_A           78 ATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQA  157 (439)
T ss_dssp             SCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------
T ss_pred             ccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchh
Confidence            4456778899999999999998  44 57888889999999999875  346788888898887744322111000    


Q ss_pred             -------CCceEEEeCCC----------CHHHHHHhhc---CCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCE
Q 012296          273 -------MGITATVIDPA----------DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAI  328 (466)
Q Consensus       273 -------~Gi~v~~vd~~----------Dle~Le~ai~---~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gil  328 (466)
                             ....+..++..          |+++|+++++   ..++++|+++.++|++|.+.+    +++|.++|++||++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~  237 (439)
T 3dxv_A          158 DAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGIL  237 (439)
T ss_dssp             ------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCE
T ss_pred             hccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence                   00011222322          5899999993   334899999999999999988    99999999999999


Q ss_pred             EEEeCCCCCCC------cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHh
Q 012296          329 VCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG  402 (466)
Q Consensus       329 lIvDea~a~~~------~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~  402 (466)
                      ||+||+|....      .........|++  |++|.+++ |. +.|++++++++++.+......... .++..+..++..
T Consensus       238 li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G~-riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aa  312 (439)
T 3dxv_A          238 VVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGG-GL-PLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAV  312 (439)
T ss_dssp             EEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TS-CCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHH
T ss_pred             EEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcC-Cc-ceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHH
Confidence            99999987321      112222345766  78999996 54 679999999988876543222223 456665555555


Q ss_pred             hHHHH--HHHHHHHHHHHHHHHHHHc----CCCeE
Q 012296          403 MKTLH--LRVQQQNSTALRMAKILEA----HPKVK  431 (466)
Q Consensus       403 L~tl~--~R~~~~~~na~~La~~L~~----~p~V~  431 (466)
                      ++.+.  ..+++..++.+.+.+.|++    +|.+.
T Consensus       313 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  347 (439)
T 3dxv_A          313 LETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIG  347 (439)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence            55332  2355556666666666654    55543

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.80  E-value=2.4e-18  Score=190.70  Aligned_cols=218  Identities=12%  Similarity=0.033  Sum_probs=159.4

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC----
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----  282 (466)
                      +.+...++|+.+|+++|++.++++++|+ +++.+++.+++++||+||++.++|.+.+..   .+...|+++++++.    
T Consensus       171 ~~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~---~~~l~Ga~~v~v~~~~~~  247 (730)
T 1c4k_A          171 HEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNS---ALAMAGGRPVYLQTNRNP  247 (730)
T ss_dssp             TBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH---HTTTTCCEEEEECEEECT
T ss_pred             ChHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHH---HHHHCCCEEEEEeCCccc
Confidence            4567899999999999999899999998 899999999999999999999999986643   14456887776642    


Q ss_pred             ------CCHHHH-----HHhhcCCC-----c----eEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-
Q 012296          283 ------ADMEGL-----EAALNNNN-----V----SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-  341 (466)
Q Consensus       283 ------~Dle~L-----e~ai~~~~-----t----klV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~-  341 (466)
                            .|+++|     ++++++++     +    ++|++++| |++|.+.|+++|+++|+++|++|++|++|+..+.. 
T Consensus       248 ~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~  326 (730)
T 1c4k_A          248 YGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFI  326 (730)
T ss_dssp             TCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSS
T ss_pred             cCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccccC
Confidence                  267777     88887641     3    89999998 58999999999999999999999999998753211 


Q ss_pred             ------ccccc---CCc----EEEECCccccCccccceeEEEEeCHHH---------HHHHHHHHHHhC-CCchHHHHHH
Q 012296          342 ------KALSL---GAD----LVLHSATKFIGGHNDVLAGSISGSGKL---------VTQIRNLHHVLG-GALNPNAAYL  398 (466)
Q Consensus       342 ------~~l~~---gaD----ivv~S~sK~lgg~gdv~gG~ivg~~el---------i~~l~~~~~~~G-~~lsp~~a~l  398 (466)
                            .++..   |+|    +++.|+||+++|+.  .+|+++.+++.         ..++......+. +.++......
T Consensus       327 ~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~--~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~iaa  404 (730)
T 1c4k_A          327 PMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAA  404 (730)
T ss_dssp             GGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred             cccCCcCcccccccCCCCCCEEEEECCCCCCCCCC--CEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHHHH
Confidence                  22333   788    99999999999875  46777543322         123333322222 2333322111


Q ss_pred             ---HHHhhH--HHHHHHHHHHHHHHHHHHHHHc-CCCeE
Q 012296          399 ---IIRGMK--TLHLRVQQQNSTALRMAKILEA-HPKVK  431 (466)
Q Consensus       399 ---~l~~L~--tl~~R~~~~~~na~~La~~L~~-~p~V~  431 (466)
                         +.+.+.  ....++++..++++.+.+.|++ .+++.
T Consensus       405 l~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~  443 (730)
T 1c4k_A          405 LDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFR  443 (730)
T ss_dssp             HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSE
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeE
Confidence               122222  2455778889999999999998 67775

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.80  E-value=6.6e-19  Score=179.85  Aligned_cols=211  Identities=16%  Similarity=0.178  Sum_probs=143.7

Q ss_pred             hHHHHHHHHHhhhCCCcE-EEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHh-hcccCCceEEEe--C---CC
Q 012296          211 TTVVVEEKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVI--D---PA  283 (466)
Q Consensus       211 ~~~~Lee~LA~l~g~e~~-l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~-~l~~~Gi~v~~v--d---~~  283 (466)
                      ..+.+++.+++++|.+.. +++++|++|+..++.+++++||+|+++.+.|++....... .+...++....+  +   ..
T Consensus        77 ~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  156 (420)
T 3gbx_A           77 VEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKI  156 (420)
T ss_dssp             HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSC
T ss_pred             HHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCc
Confidence            344566899999998654 5589999999999999999999999999999873311111 111112222222  2   25


Q ss_pred             CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-----ccccccCCcEEEECCccc
Q 012296          284 DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKF  358 (466)
Q Consensus       284 Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-----~~~l~~gaDivv~S~sK~  358 (466)
                      |+++|+++++++++++|++++|+||  ...|+++|.++|++||+++|+|+++..+..     ..... .+|+++.|+||+
T Consensus       157 d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-~~di~~~s~sK~  233 (420)
T 3gbx_A          157 DYDEMAKLAKEHKPKMIIGGFSAYS--GVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP-HAHVVTTTTHKT  233 (420)
T ss_dssp             CHHHHHHHHHHHCCSEEEECCTTCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT-TSSEEEEESSGG
T ss_pred             CHHHHHHHHHhcCCeEEEEecCccC--CccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccc-cCCEEEeecccC
Confidence            8999999997644899999999986  478999999999999999999999754322     22222 389999999999


Q ss_pred             cCccccceeEEEEeCH---HHHHHHHHHHHH--hCCCchHHHH--HHHH-Hh-hHHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          359 IGGHNDVLAGSISGSG---KLVTQIRNLHHV--LGGALNPNAA--YLII-RG-MKTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       359 lgg~gdv~gG~ivg~~---eli~~l~~~~~~--~G~~lsp~~a--~l~l-~~-L~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      ++|+.   ||++++++   ++.+.++.....  .+....+..+  .+++ .. .+.+..+.++..++++.+.+.|++.
T Consensus       234 ~~g~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  308 (420)
T 3gbx_A          234 LAGPR---GGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR  308 (420)
T ss_dssp             GCSCS---CEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCC---ceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Confidence            98653   69999987   777777654332  2232222221  2122 22 2455667788889999999999873

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.79  E-value=3.5e-18  Score=178.41  Aligned_cols=205  Identities=20%  Similarity=0.186  Sum_probs=149.1

Q ss_pred             HHHHhhhCCCcEEE-eCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHh-hcccCCceEEEeC------CCCHHHH
Q 012296          217 EKMSALEGAESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVID------PADMEGL  288 (466)
Q Consensus       217 e~LA~l~g~e~~l~-~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~-~l~~~Gi~v~~vd------~~Dle~L  288 (466)
                      +++++++|.+...+ ++||++|+..++.+++++||+|++.++.|++....... .+...+..+..++      ..|+++|
T Consensus        98 ~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l  177 (447)
T 3h7f_A           98 DRAKALFGAEFANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAV  177 (447)
T ss_dssp             HHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHH
T ss_pred             HHHHHHcCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHH
Confidence            89999999987776 89999999999999999999999999998772211000 0111123333333      2489999


Q ss_pred             HHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-----cccccccCCcEEEECCccccCccc
Q 012296          289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----NQKALSLGADLVLHSATKFIGGHN  363 (466)
Q Consensus       289 e~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-----~~~~l~~gaDivv~S~sK~lgg~g  363 (466)
                      +++++..++++|++++|+||++.  ++++|.++|+++|++||+|+++..++     ...+. .++|+++.|++|+++|+ 
T Consensus       178 ~~~i~~~~~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~-  253 (447)
T 3h7f_A          178 RATALEFRPKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGG-  253 (447)
T ss_dssp             HHHHHHHCCSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCC-
T ss_pred             HHHHHhcCCeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCC-
Confidence            99986434899999999998876  99999999999999999999965421     22223 25799999999999875 


Q ss_pred             cceeEEEEeCHHHHHHHHHHHHH--hCCCchHHHH--HHHHH-hh-HHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          364 DVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAA--YLIIR-GM-KTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       364 dv~gG~ivg~~eli~~l~~~~~~--~G~~lsp~~a--~l~l~-~L-~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                        ++|++++++++++.++.....  .|+...+..+  ..++. .+ +.+..++++..++++++.+.|+++
T Consensus       254 --~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  321 (447)
T 3h7f_A          254 --RSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAP  321 (447)
T ss_dssp             --SCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred             --CeEEEEECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              479999999998888765432  2333333221  22222 12 256678888999999999999876

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.79  E-value=3.2e-18  Score=181.42  Aligned_cols=215  Identities=13%  Similarity=0.111  Sum_probs=154.4

Q ss_pred             HHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHHcc--------CC-----C-EEEEcCCCCcchHHHHHhhcccCCc
Q 012296          214 VVEEKMSALEGAE----STVIMASGMSASTVMLLALVP--------AG-----G-HIVTTTDCYRKTRIFIETVLPKMGI  275 (466)
Q Consensus       214 ~Lee~LA~l~g~e----~~l~~sSGs~Ai~~al~all~--------~G-----d-~Vlv~~~~y~~t~~~~~~~l~~~Gi  275 (466)
                      ++.+++++++|.+    ..+++++|++|+.+++.++..        +|     + +|+++.+.|.+....+.. +. .|.
T Consensus       136 ~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~-~g-~g~  213 (504)
T 2okj_A          136 ITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAA-LG-FGT  213 (504)
T ss_dssp             HHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHH-TT-SCG
T ss_pred             HHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHH-cC-CCc
Confidence            3446668888864    467778888999998887753        57     6 799999999887655432 21 243


Q ss_pred             -eEEEeCCC-----CHHHHHHhhcCC-----CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc---
Q 012296          276 -TATVIDPA-----DMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---  341 (466)
Q Consensus       276 -~v~~vd~~-----Dle~Le~ai~~~-----~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~---  341 (466)
                       +++.++.+     |+++|+++|++.     ++++|++++|+|++|.+.|+++|+++|+++|+++++|++|+.+...   
T Consensus       214 ~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~  293 (504)
T 2okj_A          214 DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRK  293 (504)
T ss_dssp             GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTT
T ss_pred             ccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHh
Confidence             67777643     899999998751     3899999999999999999999999999999999999998765432   


Q ss_pred             --cccc--cCCcEEEECCccccCccccceeEEEEeCH-HHHHHHHH-HHHHh-CC-------------------CchHHH
Q 012296          342 --KALS--LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRN-LHHVL-GG-------------------ALNPNA  395 (466)
Q Consensus       342 --~~l~--~gaDivv~S~sK~lgg~gdv~gG~ivg~~-eli~~l~~-~~~~~-G~-------------------~lsp~~  395 (466)
                        ..+.  .++|+++.|+||+++++.  .+|+++.++ ++++.... ....+ +.                   ......
T Consensus       294 ~~~~~~g~~~~D~i~~~~hK~~~~p~--~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~  371 (504)
T 2okj_A          294 HRHKLNGIERANSVTWNPHKMMGVLL--QCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFK  371 (504)
T ss_dssp             TGGGGTTGGGCSEEEECTTSTTCCCS--CCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHH
T ss_pred             hHhhcCCcccCCEEEECchhhcCCCc--ceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHH
Confidence              1222  268999999999999775  367777765 56554221 11111 11                   012444


Q ss_pred             HHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 012296          396 AYLIIRG--MKTLHLRVQQQNSTALRMAKILEAHPKVKR  432 (466)
Q Consensus       396 a~l~l~~--L~tl~~R~~~~~~na~~La~~L~~~p~V~~  432 (466)
                      .|++++.  .+.+..++++..++++++.+.|+++|+++.
T Consensus       372 ~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~  410 (504)
T 2okj_A          372 FWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEM  410 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            5555443  345667788889999999999999888753

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.79  E-value=3e-18  Score=180.49  Aligned_cols=221  Identities=14%  Similarity=0.145  Sum_probs=154.6

Q ss_pred             chhHHHHH----HHHHhhhCCCc-----------EEEeCCHHHHHHHHHHHHccC---------CC--------E--EEE
Q 012296          209 NPTTVVVE----EKMSALEGAES-----------TVIMASGMSASTVMLLALVPA---------GG--------H--IVT  254 (466)
Q Consensus       209 np~~~~Le----e~LA~l~g~e~-----------~l~~sSGs~Ai~~al~all~~---------Gd--------~--Vlv  254 (466)
                      .|...++|    +++++++|.+.           .+++++|++|+..++.++..+         ||        +  |++
T Consensus       108 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~  187 (486)
T 1js3_A          108 SPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYA  187 (486)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEE
T ss_pred             ChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEE
Confidence            45555554    45677778752           678889999988888765321         43        3  778


Q ss_pred             cCCCCcchHHHHHhhcccCCceEEEeCC-----CCHHHHHHhhcCCCc------eEEEEeCCCCCCcccccHHHHHHHHH
Q 012296          255 TTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNNV------SLFFTESPTNPFLRCVDVKLVSDLCH  323 (466)
Q Consensus       255 ~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~Dle~Le~ai~~~~t------klV~lesP~NPtG~v~dl~~Ia~la~  323 (466)
                      +.+.|.+....    +...|++++.++.     .|+++|+++|+++ +      .+|++++|+|++|.+.|+++|+++|+
T Consensus       188 s~~~h~s~~~~----~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~-~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~  262 (486)
T 1js3_A          188 SDQAHSSVERA----GLIGGVKLKAIPSDGKFAMRASALQEALERD-KAAGLIPFFVVATLGTTSCCSFDNLLEVGPICH  262 (486)
T ss_dssp             ETTCCHHHHHH----HHHHTCEEEEECCCTTSCCCHHHHHHHHHHH-HHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred             CCCCcHHHHHH----HHhCCCceEEeecCCCCCCCHHHHHHHHHHH-HhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            99999876543    3445888888864     3899999999764 4      38999999999999999999999999


Q ss_pred             hcCCEEEEeCCCCCCCcccc-c-----c-cCCcEEEECCccccCccccceeEEEEeC-HHH-HHHHHH---HHHH-----
Q 012296          324 KKGAIVCIDGTFATPLNQKA-L-----S-LGADLVLHSATKFIGGHNDVLAGSISGS-GKL-VTQIRN---LHHV-----  386 (466)
Q Consensus       324 ~~gillIvDea~a~~~~~~~-l-----~-~gaDivv~S~sK~lgg~gdv~gG~ivg~-~el-i~~l~~---~~~~-----  386 (466)
                      ++|+++++|++|+.+....+ .     . .++|+++.++||+++++.  .+|+++.+ +++ .+.+..   +...     
T Consensus       263 ~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~--~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~  340 (486)
T 1js3_A          263 EEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF--DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS  340 (486)
T ss_dssp             HTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS--SCEEEEESCHHHHHGGGC------------C
T ss_pred             HcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCc--ceEEEEEeCHHHHHHHhcCCchhhCCCcccc
Confidence            99999999999886432111 1     1 268999999999999864  35777665 443 333311   0000     


Q ss_pred             ------------hCCCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Q 012296          387 ------------LGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYP  436 (466)
Q Consensus       387 ------------~G~~lsp~~a~l~l~--~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yP  436 (466)
                                  .+........|.+++  +.+.+..++++..++++.+.+.|++.|+++.+..|
T Consensus       341 ~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~  404 (486)
T 1js3_A          341 GLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV  404 (486)
T ss_dssp             CSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC
T ss_pred             cCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC
Confidence                        011123344555443  45678888889999999999999999887654333

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.79  E-value=3.8e-18  Score=173.48  Aligned_cols=213  Identities=15%  Similarity=0.111  Sum_probs=145.1

Q ss_pred             hhHHHHHHHHHhhh-CC----CcEEE--eCCHHHHHHHHHHHHcc--CCCEEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          210 PTTVVVEEKMSALE-GA----ESTVI--MASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       210 p~~~~Lee~LA~l~-g~----e~~l~--~sSGs~Ai~~al~all~--~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      ....++++.+++++ +.    ++.++  +++|++|+.+++..+..  +||+|+++.|.|++....+    ...|.++..+
T Consensus        69 ~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~  144 (394)
T 2ay1_A           69 SGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIM----NFMGLPVQTY  144 (394)
T ss_dssp             SCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHH----HHHTCCEEEE
T ss_pred             CCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----HHcCCceEEE
Confidence            34568889999886 43    45665  67777999999887754  9999999999999865443    3456666666


Q ss_pred             CC---C----CHHHHHHhhcCC--CceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-------
Q 012296          281 DP---A----DMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-------  341 (466)
Q Consensus       281 d~---~----Dle~Le~ai~~~--~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-------  341 (466)
                      +.   .    |++++++++++.  +++++++++|+||||.+++   +++|.++|+++|+++|+|++|......       
T Consensus       145 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~  224 (394)
T 2ay1_A          145 RYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAG  224 (394)
T ss_dssp             ECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHH
T ss_pred             ecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHH
Confidence            54   2    789999998753  3678888999999999986   567899999999999999998764321       


Q ss_pred             -ccc-ccC-CcEEEECCccccCccccceeEEEEe---CHHHHHHHHH----HHHHhCCCchHHHHHHHHHhh--------
Q 012296          342 -KAL-SLG-ADLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRN----LHHVLGGALNPNAAYLIIRGM--------  403 (466)
Q Consensus       342 -~~l-~~g-aDivv~S~sK~lgg~gdv~gG~ivg---~~eli~~l~~----~~~~~G~~lsp~~a~l~l~~L--------  403 (466)
                       ..+ ..+ .++++.|+||+++.+|. +.|++++   ++++++.+..    .........++..++++...+        
T Consensus       225 ~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~  303 (394)
T 2ay1_A          225 TRLIASRIPEVLIAASCSKNFGIYRE-RTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRAD  303 (394)
T ss_dssp             HHHHHHHCSSEEEEEECTTTTTCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHH
T ss_pred             HHHHhhcCCCEEEEEeccCCCcCcCC-ccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHH
Confidence             111 123 34789999999987763 4688877   6766544332    211111122333333333222        


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          404 --KTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       404 --~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                        +.+....+++.++++.+.+.|+++
T Consensus       304 ~~~~~~~~~~~~~~~~~~l~~~L~~~  329 (394)
T 2ay1_A          304 WMAELEAVRSGMLRLREQLAGELRDL  329 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              234445566677778888888765

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.79  E-value=3.5e-18  Score=174.92  Aligned_cols=212  Identities=12%  Similarity=0.097  Sum_probs=141.3

Q ss_pred             hhHHHHHHHHHhh--hC-C--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCce-EEEeCCC
Q 012296          210 PTTVVVEEKMSAL--EG-A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT-ATVIDPA  283 (466)
Q Consensus       210 p~~~~Lee~LA~l--~g-~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~-v~~vd~~  283 (466)
                      +...+|++.++++  .| .  ++.++++++++++.+++ .++++||+|+++.|.|++....    +...|.+ +..++..
T Consensus        75 ~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~-~~~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~~~~~~  149 (400)
T 3asa_A           75 FGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLL-SFFGPNQTVAIQDPSYPAYLDI----ARLTGAKEIIALPCL  149 (400)
T ss_dssp             TCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHH-HHHCSSCEEEEEESCCHHHHHH----HHHTTCSEEEEEECC
T ss_pred             CCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHH-HHcCCCCEEEECCCCcHHHHHH----HHHcCCcceEecccc
Confidence            4567899999998  46 3  45555556668888754 5668999999999999986543    3345766 6666543


Q ss_pred             CHHHHHHhhcC-CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc-----cccccc----CCcE
Q 012296          284 DMEGLEAALNN-NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSL----GADL  350 (466)
Q Consensus       284 Dle~Le~ai~~-~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~-----~~~l~~----gaDi  350 (466)
                      +.+.+...+++ .++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.....     .....+    +.++
T Consensus       150 ~~~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i  229 (400)
T 3asa_A          150 QENAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAI  229 (400)
T ss_dssp             GGGTTCCCCCTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEE
T ss_pred             hhcCcccChhhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceE
Confidence            11111111111 24899999999999999987   56788999999999999999874211     112222    2458


Q ss_pred             EEECCccccCccccceeEEEEeCHHH-------HHHHHHHHH-HhCCCchHHHHHHHHHhhHH--HHHHHHHHHHHHHHH
Q 012296          351 VLHSATKFIGGHNDVLAGSISGSGKL-------VTQIRNLHH-VLGGALNPNAAYLIIRGMKT--LHLRVQQQNSTALRM  420 (466)
Q Consensus       351 vv~S~sK~lgg~gdv~gG~ivg~~el-------i~~l~~~~~-~~G~~lsp~~a~l~l~~L~t--l~~R~~~~~~na~~L  420 (466)
                      ++.|+||+++.+| .+.|++++++++       ++.+..... ....+.++.....+...++.  +....++..++++.+
T Consensus       230 ~~~s~sK~~g~~G-lriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l  308 (400)
T 3asa_A          230 EINSFSKPLGFAG-IRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLL  308 (400)
T ss_dssp             EEEECCGGGTTTT-CCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             EEecchhhcCCcc-hheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            8999999998776 357899998887       665543222 21122344433333333332  444556677888889


Q ss_pred             HHHHHcC
Q 012296          421 AKILEAH  427 (466)
Q Consensus       421 a~~L~~~  427 (466)
                      .+.|++.
T Consensus       309 ~~~L~~~  315 (400)
T 3asa_A          309 RKALLAT  315 (400)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
Confidence            9999875

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.79  E-value=2.3e-18  Score=184.42  Aligned_cols=157  Identities=13%  Similarity=0.148  Sum_probs=116.8

Q ss_pred             HHHHHHHHhhh----CC-------CcEEEeCCHHHHHHHHHHH-----HccCCCEEEEcCCCCcchHHHHHhhcccCCce
Q 012296          213 VVVEEKMSALE----GA-------ESTVIMASGMSASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (466)
Q Consensus       213 ~~Lee~LA~l~----g~-------e~~l~~sSGs~Ai~~al~a-----ll~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~  276 (466)
                      ..+++.+++++    +.       ++.+++++|++|+..++.+     ++++||+|++++|.|.+..    ..+...|..
T Consensus       141 ~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~----~~~~~~g~~  216 (533)
T 3f6t_A          141 VNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYL----RIPELKDYE  216 (533)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHH----TSGGGGGSE
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHH----HHHHHcCCe
Confidence            45556665554    32       2444445555999999988     7899999999999998754    344455667


Q ss_pred             EEEeCCC---------CHHHHHHhhcCCCceEEEEeCCCCCCcccccHH---HHHHHHH-hcCCEEEEeCCCCCCCcc--
Q 012296          277 ATVIDPA---------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVK---LVSDLCH-KKGAIVCIDGTFATPLNQ--  341 (466)
Q Consensus       277 v~~vd~~---------Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~---~Ia~la~-~~gillIvDea~a~~~~~--  341 (466)
                      +..++..         |+++|+++++++ +++|++++|+||||.+.+.+   +|+++|+ ++|+++|+|++|+.....  
T Consensus       217 ~~~v~~~~~~~~~~~~d~~~l~~~l~~~-~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~  295 (533)
T 3f6t_A          217 LVEVDLHSYEKNDWEIEPNEIEKLKDPS-IKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFK  295 (533)
T ss_dssp             EEEECCCEETTTTSEECHHHHHHHSCTT-EEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCC
T ss_pred             EEEEEecCCcccCCCCCHHHHHHHhCCC-CeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCcc
Confidence            6666532         799999999874 99999999999999998765   7888888 689999999998753221  


Q ss_pred             cc--cccCCcEEEECCccccCccccceeEEEEeCHH
Q 012296          342 KA--LSLGADLVLHSATKFIGGHNDVLAGSISGSGK  375 (466)
Q Consensus       342 ~~--l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~e  375 (466)
                      ..  ...+.++++.|+||.+|.+|. +.|+++++++
T Consensus       296 ~~~~~~~~~~i~~~S~SK~~g~~G~-RiG~l~~~~~  330 (533)
T 3f6t_A          296 SIYSVVPYNTMLVYSYSKLFGCTGW-RLGVIALNEK  330 (533)
T ss_dssp             CHHHHSGGGEEEEEESHHHHTCGGG-CEEEEEEESS
T ss_pred             CHhhcCCCCEEEEecCcccCCCccc-ceEEEEECcH
Confidence            11  122456999999999998874 4678877654

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.79  E-value=3.5e-18  Score=177.98  Aligned_cols=212  Identities=16%  Similarity=0.170  Sum_probs=148.0

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc----CCCE---EEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP----AGGH---IVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~----~Gd~---Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      ..+...+|+++++++++.++++++++|++|+.+++.+++.    +||+   |+++.+.|..+...+    ...|.++..+
T Consensus        74 ~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~----~~~g~~~~~~  149 (467)
T 1ax4_A           74 GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHV----ELNGCKAINI  149 (467)
T ss_dssp             SCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHH----HHTTCEEEEC
T ss_pred             cCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHH----hccCCceecc
Confidence            3577889999999999998888889999999999999988    9998   888855444433322    2345554433


Q ss_pred             C---------------CCCHHHHHHhhcC---CCceEEEEeCCCCCC-ccccc---HHHHHHHHHhcCCEEEEeCCCCC-
Q 012296          281 D---------------PADMEGLEAALNN---NNVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT-  337 (466)
Q Consensus       281 d---------------~~Dle~Le~ai~~---~~tklV~lesP~NPt-G~v~d---l~~Ia~la~~~gillIvDea~a~-  337 (466)
                      +               ..|+++|++++++   .++++|++++|+||+ |.+.+   +++|+++|++||++||+|+++.. 
T Consensus       150 ~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~  229 (467)
T 1ax4_A          150 VTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCE  229 (467)
T ss_dssp             BCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHH
T ss_pred             cccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhh
Confidence            1               1378999999974   148999999999999 78764   67999999999999999998442 


Q ss_pred             ----------CC-cccccc------cCCcEEEECCccccCccccceeEEEEeC-H-HHHHHHHHHHHHhCC-----CchH
Q 012296          338 ----------PL-NQKALS------LGADLVLHSATKFIGGHNDVLAGSISGS-G-KLVTQIRNLHHVLGG-----ALNP  393 (466)
Q Consensus       338 ----------~~-~~~~l~------~gaDivv~S~sK~lgg~gdv~gG~ivg~-~-eli~~l~~~~~~~G~-----~lsp  393 (466)
                                .. ......      ..+|+++.|+||+++.+   +||+++++ + ++++++......+++     ..+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~  306 (467)
T 1ax4_A          230 NAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN---IGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAG  306 (467)
T ss_dssp             HHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCS---SCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCH
T ss_pred             cchhccccccccCCCchhhhhhhhccccceEEEeccccCCCC---cceEEEeCCHHHHHHHHHhhccccccccccCCccc
Confidence                      11 111111      23789999999999865   36888887 7 888887765443221     1121


Q ss_pred             HHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHc
Q 012296          394 NAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       394 ~~a~l~l~~L~tl--~~R~~~~~~na~~La~~L~~  426 (466)
                      .....+..+++.+  ..++++..++++.+.+.|++
T Consensus       307 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~  341 (467)
T 1ax4_A          307 RDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLRE  341 (467)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            1111111123322  12555666788889999986

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.66  E-value=8.1e-21  Score=193.79  Aligned_cols=215  Identities=17%  Similarity=0.125  Sum_probs=150.7

Q ss_pred             HHHHHHHHHhhh----C--C--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          212 TVVVEEKMSALE----G--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       212 ~~~Lee~LA~l~----g--~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      ..++++.+++++    |  .  ++.+++++|++|+.+++.+++++||+|++..+.|++....    +...|.++..++. 
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~~~~~  143 (392)
T 3b1d_A           68 SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARS----VRLNNRKLVSNSLK  143 (392)
Confidence            556667766654    4  2  3445555556999999999999999999999999986543    3344655554432 


Q ss_pred             -------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----ccc---
Q 012296          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL---  344 (466)
Q Consensus       283 -------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----~~l---  344 (466)
                             .|+++|++++++.++++|++++|+||+|.+.+   +++|.++|+++|+++|+|++|......     ...   
T Consensus       144 ~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~  223 (392)
T 3b1d_A          144 EENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVS  223 (392)
Confidence                   47888999887335899999999999999986   889999999999999999998753221     111   


Q ss_pred             c--cCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhC-CCchHHHHHHHHHhh----HHHHHHHHHHHHH
Q 012296          345 S--LGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG-GALNPNAAYLIIRGM----KTLHLRVQQQNST  416 (466)
Q Consensus       345 ~--~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G-~~lsp~~a~l~l~~L----~tl~~R~~~~~~n  416 (466)
                      .  .+.++++.|+||.++.+| .+.|+++++ +++++.++.....++ ...++..++++...+    +.+....++..++
T Consensus       224 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  302 (392)
T 3b1d_A          224 PDFKDFALVLSSATKTFNIAG-TKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEEN  302 (392)
Confidence            1  345689999999998666 357888876 458888877655443 123444333333333    2344455666778


Q ss_pred             HHHHHHHHHc-CCCeE
Q 012296          417 ALRMAKILEA-HPKVK  431 (466)
Q Consensus       417 a~~La~~L~~-~p~V~  431 (466)
                      ++.+.+.|++ +|++.
T Consensus       303 ~~~l~~~l~~~~~~~~  318 (392)
T 3b1d_A          303 IQFAVEYFAQEAPRLK  318 (392)
Confidence            8888888887 56654

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.78  E-value=7.5e-18  Score=179.26  Aligned_cols=217  Identities=16%  Similarity=0.178  Sum_probs=154.2

Q ss_pred             HHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc-------c-CCC------EEEEcCCCCcchHHHHHhhcccCCc
Q 012296          212 TVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV-------P-AGG------HIVTTTDCYRKTRIFIETVLPKMGI  275 (466)
Q Consensus       212 ~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all-------~-~Gd------~Vlv~~~~y~~t~~~~~~~l~~~Gi  275 (466)
                      .+++++++++++|.+  .++++++|++|+.+++.++.       + +||      +|+++...|.+....+.. +. .|.
T Consensus       150 e~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~-~g-~g~  227 (515)
T 2jis_A          150 EEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAF-LG-LGT  227 (515)
T ss_dssp             HHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHH-TT-SCG
T ss_pred             HHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHH-cC-CCC
Confidence            355677899999974  57777888899888887763       2 576      899999999887654432 21 232


Q ss_pred             -eEEEeCCC-----CHHHHHHhhcCC-----CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccc-
Q 012296          276 -TATVIDPA-----DMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA-  343 (466)
Q Consensus       276 -~v~~vd~~-----Dle~Le~ai~~~-----~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~-  343 (466)
                       +++.++.+     |+++|+++|++.     ++++|++++|+|++|.+.|+++|+++|+++|+++|+|++|+.+....+ 
T Consensus       228 ~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~  307 (515)
T 2jis_A          228 DSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQT  307 (515)
T ss_dssp             GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTT
T ss_pred             CcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChh
Confidence             67777643     799999999752     389999999999999999999999999999999999999876543221 


Q ss_pred             ----c-cc-CCcEEEECCccccCccccceeEEEEeCHH--HHHHHH----HHHHH----------h-------CCCchHH
Q 012296          344 ----L-SL-GADLVLHSATKFIGGHNDVLAGSISGSGK--LVTQIR----NLHHV----------L-------GGALNPN  394 (466)
Q Consensus       344 ----l-~~-gaDivv~S~sK~lgg~gdv~gG~ivg~~e--li~~l~----~~~~~----------~-------G~~lsp~  394 (466)
                          + .. ++|+++.|+||+++++.  .+|+++.+++  ++++..    .+...          .       +.....+
T Consensus       308 ~~~~~~g~~~aD~v~~s~hK~l~~p~--g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al  385 (515)
T 2jis_A          308 HRHLLDGIQRADSVAWNPHKLLAAGL--QCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCL  385 (515)
T ss_dssp             TGGGGTTGGGCSEEEECTTSTTCCCS--CCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHH
T ss_pred             hHhhcCCCccCCEEEECcccccCCCC--CeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHH
Confidence                2 22 68999999999998775  2577776654  655421    11100          0       0011234


Q ss_pred             HHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 012296          395 AAYLIIRG--MKTLHLRVQQQNSTALRMAKILEAHPKVKR  432 (466)
Q Consensus       395 ~a~l~l~~--L~tl~~R~~~~~~na~~La~~L~~~p~V~~  432 (466)
                      ..|++++.  .+.+...+++..++++++.+.|++.|+++.
T Consensus       386 ~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  425 (515)
T 2jis_A          386 KLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFEL  425 (515)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEE
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            44544443  345667788888999999999999887653

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.78  E-value=1.1e-17  Score=171.05  Aligned_cols=210  Identities=17%  Similarity=0.181  Sum_probs=139.8

Q ss_pred             HHHHHHHHHhhhCCCcEE-EeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHh-hcccCCceEEEeCC------C
Q 012296          212 TVVVEEKMSALEGAESTV-IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVIDP------A  283 (466)
Q Consensus       212 ~~~Lee~LA~l~g~e~~l-~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~-~l~~~Gi~v~~vd~------~  283 (466)
                      .+..++.+++++|.+... ++++|++|+..++.+++++||+|++.++.|++....... .....++.+..++.      .
T Consensus        80 ~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  159 (425)
T 3ecd_A           80 EALAIERVKRLFNAGHANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLI  159 (425)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCTTTSSC
T ss_pred             HHHHHHHHHHHhCCCCceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCcc
Confidence            333458889999987764 488999999999999999999999999999873211111 11222334445542      3


Q ss_pred             CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-----cccccccCCcEEEECCccc
Q 012296          284 DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----NQKALSLGADLVLHSATKF  358 (466)
Q Consensus       284 Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-----~~~~l~~gaDivv~S~sK~  358 (466)
                      |+++|++++++.++++|++++|+||  ...++++|.++|+++|++||+|+++..+.     ...... .+|+++.|+||+
T Consensus       160 d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~  236 (425)
T 3ecd_A          160 DYDQVEALAQQHKPSLIIAGFSAYP--RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKT  236 (425)
T ss_dssp             CHHHHHHHHHHHCCSEEEEECSCCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGG
T ss_pred             CHHHHHHHHhhcCCcEEEEccccCC--CcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh-cCcEEEecCCcc
Confidence            8999999997434899999999985  57799999999999999999999954322     122233 279999999999


Q ss_pred             cCccccceeEEEEeC-HHHHHHHHHHHHHh--CCCchHHHH--HHHH-Hh-hHHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          359 IGGHNDVLAGSISGS-GKLVTQIRNLHHVL--GGALNPNAA--YLII-RG-MKTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       359 lgg~gdv~gG~ivg~-~eli~~l~~~~~~~--G~~lsp~~a--~l~l-~~-L~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      ++|+   ++|+++++ +++.+.++......  +....+..+  .+++ .. .+.+....++..++++.+.+.|++.
T Consensus       237 l~g~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  309 (425)
T 3ecd_A          237 LRGP---RGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG  309 (425)
T ss_dssp             GCCC---SCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCC---CcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence            9765   37998887 56777666543321  122222222  1122 11 2455667778888899999999874

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.78  E-value=2.3e-17  Score=171.60  Aligned_cols=218  Identities=15%  Similarity=0.188  Sum_probs=149.2

Q ss_pred             CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc--------CCCEEEEcCCCCcchHH-HHHhhcc---
Q 012296          206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRI-FIETVLP---  271 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~--------~Gd~Vlv~~~~y~~t~~-~~~~~l~---  271 (466)
                      ++..+...++++.|+++++.  ++++++++|++|+.+++..++.        +||+||+.++.|++... .+. ...   
T Consensus        89 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~-~~g~~~  167 (449)
T 3a8u_X           89 QYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTS-LGGVNG  167 (449)
T ss_dssp             SCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHH-HCCCHH
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhh-ccCChh
Confidence            56678889999999999854  5677888899999999987764        68999999999987532 221 111   


Q ss_pred             --------cCCceEEEeCC--------CC--------HHHHHHhhcC---CCceEEEEeCCCCCCccccc----HHHHHH
Q 012296          272 --------KMGITATVIDP--------AD--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSD  320 (466)
Q Consensus       272 --------~~Gi~v~~vd~--------~D--------le~Le~ai~~---~~tklV~lesP~NPtG~v~d----l~~Ia~  320 (466)
                              ..++....++.        .|        +++|++++++   .++++|+++..+|++|.+.+    +++|.+
T Consensus       168 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~  247 (449)
T 3a8u_X          168 NRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNRE  247 (449)
T ss_dssp             HHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred             hccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHH
Confidence                    01233222221        15        8999999872   24788888766678998888    999999


Q ss_pred             HHHhcCCEEEEeCCCCCC-Cc-----ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH-------Hh
Q 012296          321 LCHKKGAIVCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VL  387 (466)
Q Consensus       321 la~~~gillIvDea~a~~-~~-----~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~-------~~  387 (466)
                      +|++||++||+||++... ..     ........|++  |++|.+++ |....|++++++++++.+.....       ..
T Consensus       248 l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~  324 (449)
T 3a8u_X          248 ICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTN-GAIPMGAVIASTEIYQTFMNQPTPEYAVEFPH  324 (449)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCC
T ss_pred             HHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccC-CCCceEEEEECHHHHHHhhccCcccccccccc
Confidence            999999999999998532 11     11122346766  77899986 32346778888888888765310       11


Q ss_pred             C--CCchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHcC
Q 012296          388 G--GALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       388 G--~~lsp~~a~l~l~~L~tl~--~R~~~~~~na~~La~~L~~~  427 (466)
                      +  ...++..+..++..++.+.  ..+++..++.+.+.+.|++.
T Consensus       325 ~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l  368 (449)
T 3a8u_X          325 GYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGI  368 (449)
T ss_dssp             CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            2  2335665555555555443  24666777888888888763

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.78  E-value=3.3e-18  Score=181.71  Aligned_cols=214  Identities=17%  Similarity=0.109  Sum_probs=137.3

Q ss_pred             CchhHHHHH----HHHHhhhCCCc----E-EEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHH----hhcccCC
Q 012296          208 GNPTTVVVE----EKMSALEGAES----T-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIE----TVLPKMG  274 (466)
Q Consensus       208 ~np~~~~Le----e~LA~l~g~e~----~-l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~----~~l~~~G  274 (466)
                      ++++.++||    +++++++|.+.    + ++++||+.|+.+++.+++++||+|++.++.|++......    ..+...|
T Consensus        94 G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g  173 (490)
T 2a7v_A           94 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATS  173 (490)
T ss_dssp             ----CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC------------------------
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcC
Confidence            456666777    99999999975    3 445699999999999999999999999999876321100    0111223


Q ss_pred             c--eEEEe--C----CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCC-----CCcc
Q 012296          275 I--TATVI--D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT-----PLNQ  341 (466)
Q Consensus       275 i--~v~~v--d----~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~-----~~~~  341 (466)
                      .  .+..+  +    ..|+++|++++++.++++|+++.++||  .+.|+++|.++|+++|++|++|+++..     +...
T Consensus       174 ~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~--~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~  251 (490)
T 2a7v_A          174 IFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIP  251 (490)
T ss_dssp             -------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC
T ss_pred             CeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC--CcccHHHHHHHHHHcCCEEEEccccccccccCCcCC
Confidence            2  22222  2    348999999986434899999888876  467999999999999999999999642     2223


Q ss_pred             cccccCCcEEEECCccccCccccceeEEEEeCHH---------------HHHHHHHHHHH--hCCCchH-HHHHH-HHH-
Q 012296          342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------------LVTQIRNLHHV--LGGALNP-NAAYL-IIR-  401 (466)
Q Consensus       342 ~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~e---------------li~~l~~~~~~--~G~~lsp-~~a~l-~l~-  401 (466)
                      .++. ++|+++.|+||+|+|+   .||+++++++               +.++++.....  .|+.... ..+.. ++. 
T Consensus       252 ~~~~-~aDiv~~S~hK~l~Gp---~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~  327 (490)
T 2a7v_A          252 SPFK-HADIVTTTTHKTLRGA---RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQ  327 (490)
T ss_dssp             CGGG-TCSEEEEESSGGGCSC---SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHH
T ss_pred             CCCC-CCCEEEECCcccCccc---cchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Confidence            4444 6999999999999877   3799988764               45666554322  1222222 22211 122 


Q ss_pred             hh-HHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          402 GM-KTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       402 ~L-~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      .+ +.+..+.++..+|++.+++.|++.
T Consensus       328 ~~~~~~~~~~~~~~~na~~L~~~L~~~  354 (490)
T 2a7v_A          328 ACTPMFREYSLQVLKNARAMADALLER  354 (490)
T ss_dssp             HHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            22 345667888899999999999986

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.78  E-value=1.8e-17  Score=171.12  Aligned_cols=221  Identities=15%  Similarity=0.141  Sum_probs=147.8

Q ss_pred             ccCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHc---c----CCCEEEEcCCCCcchHHHHHhhcc---
Q 012296          204 YGRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV---P----AGGHIVTTTDCYRKTRIFIETVLP---  271 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g--~e~~l~~sSGs~Ai~~al~all---~----~Gd~Vlv~~~~y~~t~~~~~~~l~---  271 (466)
                      +++|.++...++++.++++++  .++++++++|++|+.+++..+.   +    +||+||+.++.|++..........   
T Consensus        80 ~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~  159 (429)
T 1s0a_A           80 FGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDN  159 (429)
T ss_dssp             CSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTT
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCch
Confidence            345667788899999999996  3667777888899999987653   2    589999999999874322211100   


Q ss_pred             ---------cCCceEEEeC---------CCCHHHHHHhhcC--CCceEEEEeCC-CCCCccccc----HHHHHHHHHhcC
Q 012296          272 ---------KMGITATVID---------PADMEGLEAALNN--NNVSLFFTESP-TNPFLRCVD----VKLVSDLCHKKG  326 (466)
Q Consensus       272 ---------~~Gi~v~~vd---------~~Dle~Le~ai~~--~~tklV~lesP-~NPtG~v~d----l~~Ia~la~~~g  326 (466)
                               ..++....++         ..|+++|++++++  .++++|+++.+ +||+|.+.+    +++|.++|+++|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~  239 (429)
T 1s0a_A          160 SMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREG  239 (429)
T ss_dssp             TTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHT
T ss_pred             hhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcC
Confidence                     0123332222         2478999998872  24788887666 799998777    999999999999


Q ss_pred             CEEEEeCCCCCCC------cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH--H-HhC--CCchHHH
Q 012296          327 AIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--H-VLG--GALNPNA  395 (466)
Q Consensus       327 illIvDea~a~~~------~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~--~-~~G--~~lsp~~  395 (466)
                      ++||+||+|....      .........|++  |++|.+++ |....|++++++++++.+....  . ..+  ...++..
T Consensus       240 ~~li~De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~l~~-G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~  316 (429)
T 1s0a_A          240 ILLIADEIATGFGRTGKLFACEHAEIAPDIL--CLGKALTG-GTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA  316 (429)
T ss_dssp             CEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-SSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHH
T ss_pred             CEEEEeehhhCCcccchHHHhhhcCCCCCEE--EecccccC-CCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHH
Confidence            9999999986321      112223356766  57799986 3134788889999888776421  0 011  1234555


Q ss_pred             HHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHcC
Q 012296          396 AYLIIRGMKTLH--LRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       396 a~l~l~~L~tl~--~R~~~~~~na~~La~~L~~~  427 (466)
                      +..+...++.+.  ...++..++++.+.+.|++.
T Consensus       317 ~~a~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l  350 (429)
T 1s0a_A          317 CAAANASLAILESGDWQQQVADIEVQLREQLAPA  350 (429)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            544444444332  34566677788888888764

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.78  E-value=7.5e-18  Score=178.16  Aligned_cols=216  Identities=17%  Similarity=0.119  Sum_probs=150.1

Q ss_pred             chhHHHHH----HHHHhhhCCC-----cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHh----hcccCC-
Q 012296          209 NPTTVVVE----EKMSALEGAE-----STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET----VLPKMG-  274 (466)
Q Consensus       209 np~~~~Le----e~LA~l~g~e-----~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~----~l~~~G-  274 (466)
                      .+...+++    +++++++|++     ..++++||++|+.+++.+++++||+|+++++.|++.......    .+...| 
T Consensus        85 ~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~  164 (483)
T 1rv3_A           85 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSI  164 (483)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccc
Confidence            34444444    8999999985     348899999988888999999999999999999875421100    011112 


Q ss_pred             -ceEEEe--C----CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-----ccc
Q 012296          275 -ITATVI--D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----NQK  342 (466)
Q Consensus       275 -i~v~~v--d----~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-----~~~  342 (466)
                       +.+..+  +    ..|+++|++++++.++|+|++ +++|++ .+.|+++|.++|+++|++||+|+++..+.     ...
T Consensus       165 ~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~  242 (483)
T 1rv3_A          165 FFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPS  242 (483)
T ss_dssp             HSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCC
T ss_pred             eEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCC
Confidence             344433  3    248999999998324899999 999998 89999999999999999999999976322     223


Q ss_pred             ccccCCcEEEECCccccCccccceeEEEEeCHH---------------HHHHHHHHHH--HhCCCchH-HHHH-HHHHhh
Q 012296          343 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------------LVTQIRNLHH--VLGGALNP-NAAY-LIIRGM  403 (466)
Q Consensus       343 ~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~e---------------li~~l~~~~~--~~G~~lsp-~~a~-l~l~~L  403 (466)
                      ++. ++|+++.|+||+|+|+.   +|+++++++               +.+++.....  ..|+.... ..+. .++..+
T Consensus       243 p~~-~~div~~s~~K~l~Gpr---gG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~  318 (483)
T 1rv3_A          243 PFE-HCHVVTTTTHKTLRGCR---AGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA  318 (483)
T ss_dssp             GGG-TCSEEEEESSGGGCCCS---CEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH
T ss_pred             CCC-CCcEEEecCcccCCCCC---ceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHH
Confidence            333 68999999999998763   699988764               3334433211  12222222 2221 122222


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 012296          404 --KTLHLRVQQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       404 --~tl~~R~~~~~~na~~La~~L~~~p~V~  431 (466)
                        ..++.+.++..++++.+.+.|+++ ++.
T Consensus       319 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  347 (483)
T 1rv3_A          319 MTPEFKEYQRQVVANCRALSAALVEL-GYK  347 (483)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred             hChhHHHHHHHHHHHHHHHHHHHHhc-CCE
Confidence              346677888899999999999987 553

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.78  E-value=3.8e-17  Score=171.03  Aligned_cols=227  Identities=14%  Similarity=0.108  Sum_probs=150.2

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc--------CCCEEEEcCCCCcchHHHHHhh--
Q 012296          202 FEYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV--  269 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~--------~Gd~Vlv~~~~y~~t~~~~~~~--  269 (466)
                      +.+.++.++...+|+++|+++++.  +.++++++|++|+..++..++.        ++++||+.++.|++........  
T Consensus        86 ~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~  165 (459)
T 4a6r_A           86 NTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGG  165 (459)
T ss_dssp             CTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSC
T ss_pred             ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcC
Confidence            444567889999999999999854  6778888899999999988875        5789999999999843222111  


Q ss_pred             -------cccCCceEEEeCCC---------C--------HHHHHHhhcC---CCceEEEEeCCCCCCccccc----HHHH
Q 012296          270 -------LPKMGITATVIDPA---------D--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLV  318 (466)
Q Consensus       270 -------l~~~Gi~v~~vd~~---------D--------le~Le~ai~~---~~tklV~lesP~NPtG~v~d----l~~I  318 (466)
                             .......+..++..         |        +++|+++++.   .++++|++|.++|++|.+.+    +++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l  245 (459)
T 4a6r_A          166 MKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEI  245 (459)
T ss_dssp             CTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHH
T ss_pred             ChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHH
Confidence                   01111123333311         2        7888888862   34788888887777888776    9999


Q ss_pred             HHHHHhcCCEEEEeCCCCCCCc------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHH-----HHHHh
Q 012296          319 SDLCHKKGAIVCIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-----LHHVL  387 (466)
Q Consensus       319 a~la~~~gillIvDea~a~~~~------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~-----~~~~~  387 (466)
                      .++|++||++||+||++.....      ........|+++  ++|.+++++ ...|++++++++++.+..     ....+
T Consensus       246 ~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t--~sK~l~gg~-~~lg~v~~~~~i~~~~~~~~~~~~~~t~  322 (459)
T 4a6r_A          246 ERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFT--AAKGLSSGY-LPIGAVFVGKRVAEGLIAGGDFNHGFTY  322 (459)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTS-SCCEEEEECHHHHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeee--hhhhhcCCC-CCccceeeCHHHHHHhhcCCCcccCCCC
Confidence            9999999999999999764211      111223457765  679998754 346888899999988872     22233


Q ss_pred             CCCchHHHHHHHHHhhHHHH--HHHHHHH-HHHHHHHHHH----HcCCCeEEE
Q 012296          388 GGALNPNAAYLIIRGMKTLH--LRVQQQN-STALRMAKIL----EAHPKVKRV  433 (466)
Q Consensus       388 G~~lsp~~a~l~l~~L~tl~--~R~~~~~-~na~~La~~L----~~~p~V~~V  433 (466)
                      +  .++..+.+++..++.+.  ..+++.. ++.+++.+.|    .++|.+..+
T Consensus       323 ~--~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  373 (459)
T 4a6r_A          323 S--GHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDV  373 (459)
T ss_dssp             C--SCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEE
T ss_pred             C--CCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            3  35565555555555432  2244444 4445554444    556655443

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.77  E-value=9.2e-18  Score=186.95  Aligned_cols=214  Identities=14%  Similarity=0.096  Sum_probs=157.4

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC----
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----  282 (466)
                      +......+++.+++++|.+..+++++|+ +|+.+++.+++++||+|++++++|.+.+..+    ...|+++.+++.    
T Consensus       203 ~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~----~~~G~~~v~v~~~~~~  278 (755)
T 2vyc_A          203 HTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGL----MLTGAKPVYMVPSRNR  278 (755)
T ss_dssp             TCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHH----HHHCCEEEEECCCBCT
T ss_pred             CccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHH----HHcCCEEEEEeCCCCc
Confidence            4566889999999999999888999997 8899999999999999999999999876543    335788777753    


Q ss_pred             ------C-----CHHHHHHhhcCC-Cce--------EEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc-
Q 012296          283 ------A-----DMEGLEAALNNN-NVS--------LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-  341 (466)
Q Consensus       283 ------~-----Dle~Le~ai~~~-~tk--------lV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~-  341 (466)
                            .     |+++|+++++++ +++        ++++++| ||+|.+.|+++|+++|+++|++|++|++|+..... 
T Consensus       279 ~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~  357 (755)
T 2vyc_A          279 YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFN  357 (755)
T ss_dssp             TSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGC
T ss_pred             cccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhcccC
Confidence                  2     799999998642 244        8999998 69999999999999999999999999998754322 


Q ss_pred             ------cccccC--CcE------EEECCccccCccccceeEEEEeCHH---H-HHHHHHHHHHhC-CCchHHHHHH---H
Q 012296          342 ------KALSLG--ADL------VLHSATKFIGGHNDVLAGSISGSGK---L-VTQIRNLHHVLG-GALNPNAAYL---I  399 (466)
Q Consensus       342 ------~~l~~g--aDi------vv~S~sK~lgg~gdv~gG~ivg~~e---l-i~~l~~~~~~~G-~~lsp~~a~l---~  399 (466)
                            .++ .|  +|+      ++.|+||+++|+.  .+|+++.+++   + ..++......+. ++.+......   +
T Consensus       358 ~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~~--~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~aA  434 (755)
T 2vyc_A          358 PIYADHYAM-RGEPGDHNGPTVFATHSTHKLLNALS--QASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVA  434 (755)
T ss_dssp             GGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSSCCT--TCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHHHH
T ss_pred             cccCCcchh-cCCcCCccCCCeEEEECccccccCcC--CeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                  222 56  676      9999999999875  4677766543   2 233333322232 2333222111   1


Q ss_pred             HHhhHH--HHHHHHHHHHHHHHHHHHHHcCCC
Q 012296          400 IRGMKT--LHLRVQQQNSTALRMAKILEAHPK  429 (466)
Q Consensus       400 l~~L~t--l~~R~~~~~~na~~La~~L~~~p~  429 (466)
                      ++.+..  ...++++..++++.+.+.|+++++
T Consensus       435 ~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~  466 (755)
T 2vyc_A          435 VSMMDGNSGLSLTQEVIDEAVDFRQAMARLYK  466 (755)
T ss_dssp             HHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            222221  356788888999999999988765

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.77  E-value=2.4e-18  Score=180.16  Aligned_cols=166  Identities=13%  Similarity=0.142  Sum_probs=125.2

Q ss_pred             CccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEE
Q 012296          201 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (466)
Q Consensus       201 ~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~  279 (466)
                      +++.-.++.+...++++.+++ +|.++.+++++|+ +|+.+++.+++++||+|++++++|.++...+.    ..|.++.+
T Consensus        48 ~~d~~~~~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~----~~G~~~~~  122 (446)
T 2x3l_A           48 GLDDLHHPEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALD----ISQQEGHF  122 (446)
T ss_dssp             TSCCTTSCSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHH----HHTCCEEE
T ss_pred             CCccccCcchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHH----HcCCeEEE
Confidence            344444567788999999999 9987777888776 89999999999999999999999998765443    24555555


Q ss_pred             eCC--C---------CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-----cccc
Q 012296          280 IDP--A---------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----NQKA  343 (466)
Q Consensus       280 vd~--~---------Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-----~~~~  343 (466)
                      ++.  +         |+++|   +++ ++++|++++| |++|.+.|+++|.++|+++|+++|+|++++..+     ....
T Consensus       123 v~~~~~~~~~~~~~~d~~~l---~~~-~~~~v~~~~~-n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~  197 (446)
T 2x3l_A          123 IETHQSPLTNHYNKVNLSRL---NND-GHKLVVLTYP-NYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDST  197 (446)
T ss_dssp             CEEEECTTTSSEEEEEC-----------CCEEEEESS-CTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCG
T ss_pred             EeCeeccccCcCCCCCHHHH---cCC-CceEEEEECC-CCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCCh
Confidence            443  1         45555   344 4899999995 569999999999999999999999999987622     2234


Q ss_pred             cccCCcEEEECCccccCccccceeEEEEeCHHHHH
Q 012296          344 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT  378 (466)
Q Consensus       344 l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~  378 (466)
                      ...|+|+++.|+||+++++.  .+|++++++++++
T Consensus       198 ~~~g~Di~~~S~~K~l~~~~--g~g~l~~~~~~i~  230 (446)
T 2x3l_A          198 LNYQADYVVQSFHKTLPALT--MGSVLYIHKNAPY  230 (446)
T ss_dssp             GGGTCSEEEECHHHHSSSCT--TCEEEEEETTCTT
T ss_pred             HHcCCCEEEECCcccccccc--ccEEEEEcCCcCC
Confidence            45689999999999877654  3688888776644

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.77  E-value=6.1e-17  Score=169.48  Aligned_cols=229  Identities=11%  Similarity=0.078  Sum_probs=149.7

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc--------CCCEEEEcCCCCcchHHHHHhh--
Q 012296          202 FEYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV--  269 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~--------~Gd~Vlv~~~~y~~t~~~~~~~--  269 (466)
                      +.+..+.++...+|+++|+++.+.  ++++++++|++|+..++..++.        ++++||+.++.|++........  
T Consensus        87 ~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~  166 (460)
T 3gju_A           87 HAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTG  166 (460)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCC
T ss_pred             ccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccC
Confidence            334466788899999999998743  6788888999999999988774        4689999999998743222111  


Q ss_pred             -------cccCCceEEEeC--C----CC------------HHHHHHhhcC---CCceEEEEeCCCCCCccccc----HHH
Q 012296          270 -------LPKMGITATVID--P----AD------------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKL  317 (466)
Q Consensus       270 -------l~~~Gi~v~~vd--~----~D------------le~Le~ai~~---~~tklV~lesP~NPtG~v~d----l~~  317 (466)
                             +......+..++  .    .|            +++|++++++   .++++|++|.++|++|.+.+    +++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~  246 (460)
T 3gju_A          167 LDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEK  246 (460)
T ss_dssp             CGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHH
T ss_pred             CcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHH
Confidence                   111111233333  1    12            6889988862   24899999988888888665    999


Q ss_pred             HHHHHHhcCCEEEEeCCCCCCCc------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHH----HH-H
Q 012296          318 VSDLCHKKGAIVCIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL----HH-V  386 (466)
Q Consensus       318 Ia~la~~~gillIvDea~a~~~~------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~----~~-~  386 (466)
                      |.++|++||++||+||+|.....      ........|+++  ++|.++++. ...|++++++++++.+...    .. .
T Consensus       247 l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~l~gG~-~~lg~v~~~~~i~~~~~~~~~~~~~~~  323 (460)
T 3gju_A          247 IQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLIT--IAKGLTSAY-APLSGVIVADRVWQVLVQGSDKLGSLG  323 (460)
T ss_dssp             HHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--ECGGGTTTS-SCCEEEEEEHHHHHHHHHHHHHHCSCS
T ss_pred             HHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeee--eehhhcCCC-CCeEEEEECHHHHHHHhcccccccccc
Confidence            99999999999999999774211      111223356664  679998742 3468889999999888632    11 1


Q ss_pred             hC--CCchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHH----HHHHcCCCeEEE
Q 012296          387 LG--GALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMA----KILEAHPKVKRV  433 (466)
Q Consensus       387 ~G--~~lsp~~a~l~l~~L~tl~--~R~~~~~~na~~La----~~L~~~p~V~~V  433 (466)
                      .+  ...++..+.+++..++.+.  ..+++..++.+++.    +.|+++|.+..+
T Consensus       324 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  378 (460)
T 3gju_A          324 HGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEV  378 (460)
T ss_dssp             CCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            11  2345666666555555432  22344444444444    445566766543

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.77  E-value=1e-17  Score=170.37  Aligned_cols=216  Identities=16%  Similarity=0.134  Sum_probs=149.6

Q ss_pred             CchhHHHHH----HHHHhhhCCCcEE-EeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCC--ceEEEe
Q 012296          208 GNPTTVVVE----EKMSALEGAESTV-IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG--ITATVI  280 (466)
Q Consensus       208 ~np~~~~Le----e~LA~l~g~e~~l-~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~G--i~v~~v  280 (466)
                      +++...+++    +++++++|.+... ++++|++|+.+++.+++++||+|+++.+.|+++..... .+...|  +++..+
T Consensus        63 ~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~~~~  141 (405)
T 2vi8_A           63 GCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGS-PVNFSGVQYNFVAY  141 (405)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTC-TTSHHHHHSEEEEE
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccc-hhhhccceeEEEec
Confidence            345555665    6999999987654 46899999999999999999999999999987532100 001112  244444


Q ss_pred             CC------CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc---ccccc-cCCcE
Q 012296          281 DP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---QKALS-LGADL  350 (466)
Q Consensus       281 d~------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~---~~~l~-~gaDi  350 (466)
                      +.      .|+++|++++++.++++|++ +|+|. |...++++|.++|+++|+++|+|++++.+..   ..... .+.|+
T Consensus       142 ~~~~~~~~~d~~~l~~~i~~~~~~~v~~-~~~~~-~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di  219 (405)
T 2vi8_A          142 GVDPETHVIDYDDVREKARLHRPKLIVA-AAAAY-PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHF  219 (405)
T ss_dssp             CBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSC-CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSE
T ss_pred             ccccccCCcCHHHHHHHHHhcCCeEEEE-eCCCC-CccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCE
Confidence            32      47999999997523888888 55553 5677899999999999999999999873211   11111 15799


Q ss_pred             EEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhC-CCchHHHHH---HHHHhh--HHHHHHHHHHHHHHHHHHHHH
Q 012296          351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG-GALNPNAAY---LIIRGM--KTLHLRVQQQNSTALRMAKIL  424 (466)
Q Consensus       351 vv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G-~~lsp~~a~---l~l~~L--~tl~~R~~~~~~na~~La~~L  424 (466)
                      ++.|+||+++|+.   ||++++++++++.++.....+. ++.++....   .++..+  +.++..+++..++++.+.+.|
T Consensus       220 ~~~s~sK~~~g~~---gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L  296 (405)
T 2vi8_A          220 VTTTTHKTLRGPR---GGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASAL  296 (405)
T ss_dssp             EEEESSSTTCCCS---CEEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccccCCCCC---CeEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999998653   4999999999888876543221 222232221   222221  345667778888999999999


Q ss_pred             HcCCCe
Q 012296          425 EAHPKV  430 (466)
Q Consensus       425 ~~~p~V  430 (466)
                      +++ ++
T Consensus       297 ~~~-g~  301 (405)
T 2vi8_A          297 QNE-GF  301 (405)
T ss_dssp             HHT-TC
T ss_pred             HhC-CC
Confidence            876 44

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.76  E-value=1.6e-17  Score=175.80  Aligned_cols=226  Identities=12%  Similarity=0.147  Sum_probs=152.3

Q ss_pred             CccccCCCchhHHHH----HHHHHhhhCC---CcEEEeCCHHHHHHHHHHHH----c---------cC------CC-EEE
Q 012296          201 SFEYGRYGNPTTVVV----EEKMSALEGA---ESTVIMASGMSASTVMLLAL----V---------PA------GG-HIV  253 (466)
Q Consensus       201 ~~~Y~R~~np~~~~L----ee~LA~l~g~---e~~l~~sSGs~Ai~~al~al----l---------~~------Gd-~Vl  253 (466)
                      .+.|..  .|...++    +++|++++|.   +..+++++|++|+..++.+.    +         .+      |+ +|+
T Consensus       129 ~~~~~~--~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~  206 (497)
T 2qma_A          129 MDSWDQ--ASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIV  206 (497)
T ss_dssp             TTCGGG--CHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEE
T ss_pred             ccchhh--ChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEE
Confidence            344543  3455454    4559999987   45777788889998888763    3         13      46 799


Q ss_pred             EcCCCCcchHHHHHhhcccCCc-eEEEeCCC-----CHHHHHHhhcCC---C--ceEEEEeCCCCCCcccccHHHHHHHH
Q 012296          254 TTTDCYRKTRIFIETVLPKMGI-TATVIDPA-----DMEGLEAALNNN---N--VSLFFTESPTNPFLRCVDVKLVSDLC  322 (466)
Q Consensus       254 v~~~~y~~t~~~~~~~l~~~Gi-~v~~vd~~-----Dle~Le~ai~~~---~--tklV~lesP~NPtG~v~dl~~Ia~la  322 (466)
                      ++...|.+....+.. +. .|. +++.++.+     |+++|+++|+++   .  +.+|+++.++|++|.+.|+++|+++|
T Consensus       207 ~s~~~h~s~~~~~~~-~g-~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~  284 (497)
T 2qma_A          207 CSKKSHFTVQKSASW-MG-LGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMA  284 (497)
T ss_dssp             EETTSCTHHHHHHHH-TT-SCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHH
T ss_pred             ECCCchHHHHHHHHH-cC-CCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHH
Confidence            999999886654432 21 233 56666643     789999988652   1  34888899999999999999999999


Q ss_pred             HhcCCEEEEeCCCCCCCcccc----c-cc-CCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHh-C------
Q 012296          323 HKKGAIVCIDGTFATPLNQKA----L-SL-GADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL-G------  388 (466)
Q Consensus       323 ~~~gillIvDea~a~~~~~~~----l-~~-gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~-G------  388 (466)
                      +++|+++|+|++|+.+....+    + .. ++|+++.|+||+++++.  .+|+++.+ +.+++.+......+ +      
T Consensus       285 ~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~--~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~  362 (497)
T 2qma_A          285 VKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTI--SCGALLVNDKSNFKFLLHHADYLNREHDELP  362 (497)
T ss_dssp             HHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCS--SCEEEEESCGGGGGGGCC-------------
T ss_pred             HHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCc--ceEEEEEeCHHHHHHhcCCchhcCCccccCC
Confidence            999999999999876543221    1 12 67999999999999885  34666554 44443332100000 0      


Q ss_pred             ----CC------chHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 012296          389 ----GA------LNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKR  432 (466)
Q Consensus       389 ----~~------lsp~~a~l~l~--~L~tl~~R~~~~~~na~~La~~L~~~p~V~~  432 (466)
                          ..      ......|.+++  +.+.+..++++..++++++.+.|+++|+++.
T Consensus       363 ~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~  418 (497)
T 2qma_A          363 NLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFEL  418 (497)
T ss_dssp             -------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred             CccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence                00      11233444444  3355677888889999999999999888754

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.76  E-value=1.3e-17  Score=175.16  Aligned_cols=227  Identities=13%  Similarity=0.140  Sum_probs=154.9

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc-------CC-CEEEEcCCCCcchHHHHHhh----
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETV----  269 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~-------~G-d~Vlv~~~~y~~t~~~~~~~----  269 (466)
                      ++++.++...+|+++|+++++.  +++++++||++|+..++..++.       +| ++||+.++.|++........    
T Consensus       112 ~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~  191 (457)
T 3tfu_A          112 FGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPH  191 (457)
T ss_dssp             SSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCc
Confidence            4667788999999999999953  6788888999999999988765       55 48999999998743221111    


Q ss_pred             ------cccCCceEEEeCC-------CCHHHHHHhhcC--CCceEEEEeC-CCCCCccccc----HHHHHHHHHhcCCEE
Q 012296          270 ------LPKMGITATVIDP-------ADMEGLEAALNN--NNVSLFFTES-PTNPFLRCVD----VKLVSDLCHKKGAIV  329 (466)
Q Consensus       270 ------l~~~Gi~v~~vd~-------~Dle~Le~ai~~--~~tklV~les-P~NPtG~v~d----l~~Ia~la~~~gill  329 (466)
                            .......+.+++.       .|+++|++++++  .++++|++|. ++|++|.+.+    +++|.++|++||++|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gill  271 (457)
T 3tfu_A          192 GGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLL  271 (457)
T ss_dssp             ----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEE
T ss_pred             ccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence                  0111112223332       378899999872  2489999999 9999998875    999999999999999


Q ss_pred             EEeCCCCCCC------cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHH--H-HHhC--CCchHHHHHH
Q 012296          330 CIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL--H-HVLG--GALNPNAAYL  398 (466)
Q Consensus       330 IvDea~a~~~------~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~--~-~~~G--~~lsp~~a~l  398 (466)
                      |+||++....      .........|++  +++|.++|+. ...|++++++++++.+...  . ...+  ...++..+..
T Consensus       272 I~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~gG~-~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aa  348 (457)
T 3tfu_A          272 IFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTGGY-LSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAV  348 (457)
T ss_dssp             EEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTS-SCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHH
T ss_pred             EEEcCccCCccccchhHhHhcCCCceEE--EEChhhhCCC-cceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHH
Confidence            9999976321      112223346777  6889998742 3478999999999887522  1 0112  2346666666


Q ss_pred             HHHhhHHHH--HHHHHHHHHHHHHHHHHHc---CCCeEEE
Q 012296          399 IIRGMKTLH--LRVQQQNSTALRMAKILEA---HPKVKRV  433 (466)
Q Consensus       399 ~l~~L~tl~--~R~~~~~~na~~La~~L~~---~p~V~~V  433 (466)
                      ++..++.+.  ..+++..++.+++.+.|++   +|.+..+
T Consensus       349 a~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v  388 (457)
T 3tfu_A          349 SVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDV  388 (457)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGGGSTTEEEE
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCCeeee
Confidence            666666542  2355666777777777765   3555444

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.76  E-value=6.7e-17  Score=166.87  Aligned_cols=218  Identities=13%  Similarity=0.035  Sum_probs=145.6

Q ss_pred             cCCCchhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHHcc-CCCEEEEcCCCCcchHHHHHhh----------c
Q 012296          205 GRYGNPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVP-AGGHIVTTTDCYRKTRIFIETV----------L  270 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~e---~~l~~sSGs~Ai~~al~all~-~Gd~Vlv~~~~y~~t~~~~~~~----------l  270 (466)
                      .+|.++...++++.|++++|.+   +++++++|++|+..++..+.. +||+||+.+|.|++........          .
T Consensus        81 ~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~  160 (419)
T 2eo5_A           81 NDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIV  160 (419)
T ss_dssp             SCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSS
T ss_pred             cccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCcccccccc
Confidence            4577888999999999999863   566667788999999987653 4999999999998643322111          0


Q ss_pred             ccCCceEEEeCCC---------------------CHHHHH-HhhcC----CCceEEEEeCCCCCCccccc----HHHHHH
Q 012296          271 PKMGITATVIDPA---------------------DMEGLE-AALNN----NNVSLFFTESPTNPFLRCVD----VKLVSD  320 (466)
Q Consensus       271 ~~~Gi~v~~vd~~---------------------Dle~Le-~ai~~----~~tklV~lesP~NPtG~v~d----l~~Ia~  320 (466)
                      ......+..++..                     |+++|+ +++++    .++++|+++..+||+|.+.+    +++|.+
T Consensus       161 ~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~  240 (419)
T 2eo5_A          161 GPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQK  240 (419)
T ss_dssp             CCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred             CCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHH
Confidence            0111234444322                     367888 88863    23677777655567898766    999999


Q ss_pred             HHHhcCCEEEEeCCCCCCCc------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHH
Q 012296          321 LCHKKGAIVCIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN  394 (466)
Q Consensus       321 la~~~gillIvDea~a~~~~------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~  394 (466)
                      +|++||++||+||+|.....      ........|++  |++|.+++ |-.+.|+++++++++ .+ ..........++.
T Consensus       241 l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~-G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~  315 (419)
T 2eo5_A          241 LAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVI--TLAKALGG-GIMPIGATIFRKDLD-FK-PGMHSNTFGGNAL  315 (419)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TTSCCEEEEEEGGGC-CC-------CCCCCHH
T ss_pred             HHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEE--EecccccC-CccceEEEEEchHhh-cC-CcccCCCCCCCHH
Confidence            99999999999999864211      11122345665  68899996 413568888888877 65 2111112234566


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          395 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       395 ~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      .+..+...++.+....++..++++.+.+.|++.
T Consensus       316 ~~~aa~aal~~~~~~~~~~~~~~~~l~~~L~~~  348 (419)
T 2eo5_A          316 ACAIGSKVIDIVKDLLPHVNEIGKIFAEELQGL  348 (419)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            665555666655556677788889999999875

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.76  E-value=2.1e-17  Score=170.96  Aligned_cols=216  Identities=19%  Similarity=0.245  Sum_probs=147.4

Q ss_pred             CCchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHHcc--CCCEEEEcCCCCcchHHHHHhh---------cc-cC
Q 012296          207 YGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETV---------LP-KM  273 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g-~e~~l~~sSGs~Ai~~al~all~--~Gd~Vlv~~~~y~~t~~~~~~~---------l~-~~  273 (466)
                      ++++...+|+++|+++++ .++++++++|++|+..++..+..  ++++||+.++.|++........         .. ..
T Consensus        92 ~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~  171 (434)
T 3l44_A           92 TPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSA  171 (434)
T ss_dssp             SCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSST
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcC
Confidence            567889999999999984 57788888999999999987654  7789999999998743111000         00 00


Q ss_pred             Cc------eEEEeCCCCHHHHHHhhcC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCC--
Q 012296          274 GI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL--  339 (466)
Q Consensus       274 Gi------~v~~vd~~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~--  339 (466)
                      ++      .+..++..|+++|++++++  .++++|+++.++|++|.+.+    +++|.++|++||++||+||+|....  
T Consensus       172 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g  251 (434)
T 3l44_A          172 GVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFM  251 (434)
T ss_dssp             TCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSS
T ss_pred             CCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceecc
Confidence            11      3445566689999999873  24788888877778888887    9999999999999999999987431  


Q ss_pred             -c--ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHH-hC--CCchHHHHHHHHHhhHHH--HHHHH
Q 012296          340 -N--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV-LG--GALNPNAAYLIIRGMKTL--HLRVQ  411 (466)
Q Consensus       340 -~--~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~-~G--~~lsp~~a~l~l~~L~tl--~~R~~  411 (466)
                       .  ........|++  +++|.+++ | ...|++++++++++.+...... .+  ...++..+..++..++.+  +..++
T Consensus       252 ~~~~~~~~~~~~di~--t~sK~~~~-G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~  327 (434)
T 3l44_A          252 YGGAQDLLGVTPDLT--ALGKVIGG-G-LPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYE  327 (434)
T ss_dssp             SSCHHHHHTCCCSEE--EEEGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHH
T ss_pred             ccHHHHHcCCCCCee--ehhhhhcC-C-cCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHH
Confidence             1  11122335654  57899984 4 4578889999998876542111 11  234566555555555533  23455


Q ss_pred             HHHHHHHHHHHHHHc
Q 012296          412 QQNSTALRMAKILEA  426 (466)
Q Consensus       412 ~~~~na~~La~~L~~  426 (466)
                      +..++.+++.+.|++
T Consensus       328 ~~~~~~~~l~~~L~~  342 (434)
T 3l44_A          328 KLDELGATLEKGILE  342 (434)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666666666666654

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.76  E-value=9.9e-18  Score=173.53  Aligned_cols=217  Identities=15%  Similarity=0.193  Sum_probs=151.1

Q ss_pred             CCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHHH--ccCCCEEEEcCCCCcchHHHHHhhc----------ccC
Q 012296          207 YGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVL----------PKM  273 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~-g~e~~l~~sSGs~Ai~~al~al--l~~Gd~Vlv~~~~y~~t~~~~~~~l----------~~~  273 (466)
                      +.++...+++++|++++ +.+.++++++|++|+.+++...  +.++++||+.++.|++.........          ...
T Consensus        93 ~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~  172 (434)
T 2epj_A           93 APGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSA  172 (434)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESST
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCC
Confidence            56788899999999999 6778888899999999998862  4556788888899987332110000          012


Q ss_pred             Cc------eEEEeCCCCHHHHHHhhcC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCcc
Q 012296          274 GI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLNQ  341 (466)
Q Consensus       274 Gi------~v~~vd~~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~~~  341 (466)
                      |+      .+..++..|+++|++++++  .++++|+++..+|++|.+.+    +++|.++|++||++||+||++......
T Consensus       173 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g  252 (434)
T 2epj_A          173 GVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLG  252 (434)
T ss_dssp             TCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSS
T ss_pred             CCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCC
Confidence            33      2444555789999999873  24888888877788999888    999999999999999999998732111


Q ss_pred             -----cccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH-HhCC--CchHHHHHHHHHhhHHHH--HHHH
Q 012296          342 -----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGG--ALNPNAAYLIIRGMKTLH--LRVQ  411 (466)
Q Consensus       342 -----~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~-~~G~--~lsp~~a~l~l~~L~tl~--~R~~  411 (466)
                           .......|++  |++|.+++ | ..+|++++++++++.+..... ..+.  ..++..+.+++..++.+.  ...+
T Consensus       253 ~~~~~~~~~~~~di~--s~sK~l~~-G-~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~  328 (434)
T 2epj_A          253 LEGAQGYFNIEGDII--VLGKIIGG-G-FPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYS  328 (434)
T ss_dssp             TTHHHHHHTCCCSEE--EEEGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHH
T ss_pred             cchhhHHhCCCCCee--eecchhcC-C-cceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHH
Confidence                 1122346765  78899997 4 457999999988876654111 1122  345666665555555443  3456


Q ss_pred             HHHHHHHHHHHHHHcC
Q 012296          412 QQNSTALRMAKILEAH  427 (466)
Q Consensus       412 ~~~~na~~La~~L~~~  427 (466)
                      +..++.+.+.+.|++.
T Consensus       329 ~~~~~~~~l~~~L~~~  344 (434)
T 2epj_A          329 VSREAAKALEEAASEV  344 (434)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6677777777777653

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.75  E-value=2.5e-17  Score=169.19  Aligned_cols=215  Identities=14%  Similarity=0.158  Sum_probs=142.6

Q ss_pred             CCCchhHHHHHHHHHhhh-C-C-CcEEEeCCHHHHHHHHHH---HHccCCCEEEEcCCCCcchHHHHHhhcc-------c
Q 012296          206 RYGNPTTVVVEEKMSALE-G-A-ESTVIMASGMSASTVMLL---ALVPAGGHIVTTTDCYRKTRIFIETVLP-------K  272 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~-g-~-e~~l~~sSGs~Ai~~al~---all~~Gd~Vlv~~~~y~~t~~~~~~~l~-------~  272 (466)
                      ++.++...+|++.|++++ + . ++++++++|++|+.+++.   .+.++| +|++.++.|++..........       .
T Consensus        80 ~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~  158 (426)
T 1sff_A           80 VLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAG  158 (426)
T ss_dssp             TEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTT
T ss_pred             ccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccc
Confidence            445788899999999999 5 3 456666777899999987   666776 899999999875432212111       1


Q ss_pred             CCc---eEEEeCC----------CCHHHHHHhhcC----CCceEEEEe-CCCCCCccccc----HHHHHHHHHhcCCEEE
Q 012296          273 MGI---TATVIDP----------ADMEGLEAALNN----NNVSLFFTE-SPTNPFLRCVD----VKLVSDLCHKKGAIVC  330 (466)
Q Consensus       273 ~Gi---~v~~vd~----------~Dle~Le~ai~~----~~tklV~le-sP~NPtG~v~d----l~~Ia~la~~~gillI  330 (466)
                      ++.   .+..++.          .|+++|++++++    .++++|+++ +++| ||.+.+    +++|.++|++||++||
T Consensus       159 ~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li  237 (426)
T 1sff_A          159 MGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLI  237 (426)
T ss_dssp             SCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEE
T ss_pred             cCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEE
Confidence            110   1333432          168899988862    247888885 4567 997777    9999999999999999


Q ss_pred             EeCCCCCCCc------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH
Q 012296          331 IDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK  404 (466)
Q Consensus       331 vDea~a~~~~------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~  404 (466)
                      +||+|.....      .......+|++  |++|++++ | .+.|++++++++++.+...........++..+..+...++
T Consensus       238 ~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-G-lriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~  313 (426)
T 1sff_A          238 ADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-G-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLK  313 (426)
T ss_dssp             EECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGT-S-SCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHH
T ss_pred             EechhhccCcccchhhhhhcCCCCCEE--EEcccccC-C-CceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHH
Confidence            9999874211      11122235655  78899997 5 4579999999888766532211222345665555555555


Q ss_pred             HHHH--HHHHHHHHHHHHHHHHHc
Q 012296          405 TLHL--RVQQQNSTALRMAKILEA  426 (466)
Q Consensus       405 tl~~--R~~~~~~na~~La~~L~~  426 (466)
                      .+..  ..++..++++.+.+.|++
T Consensus       314 ~~~~~~~~~~~~~~~~~l~~~l~~  337 (426)
T 1sff_A          314 VFEQENLLQKANDLGQKLKDGLLA  337 (426)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHH
Confidence            4432  345566777777777765

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.75  E-value=8.7e-18  Score=174.90  Aligned_cols=205  Identities=13%  Similarity=0.151  Sum_probs=146.7

Q ss_pred             HHHHHHHHHhhhC------C-CcEEEeCCHH-HHHHHHHHHH--------ccCCCEEEEcCCCCcchHHHHHhhcccCCc
Q 012296          212 TVVVEEKMSALEG------A-ESTVIMASGM-SASTVMLLAL--------VPAGGHIVTTTDCYRKTRIFIETVLPKMGI  275 (466)
Q Consensus       212 ~~~Lee~LA~l~g------~-e~~l~~sSGs-~Ai~~al~al--------l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi  275 (466)
                      ..+|++.|+++++      . ++.+++++|+ +++.+++.++        +++||+|+++.|.|......+.    ..|.
T Consensus       102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~----~~g~  177 (427)
T 2hox_A          102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTK----YFDK  177 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHH----HSCB
T ss_pred             hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHH----HcCC
Confidence            5788999998875      2 3455555555 9999999999        8999999999999987654443    3454


Q ss_pred             eEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEEC
Q 012296          276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHS  354 (466)
Q Consensus       276 ~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S  354 (466)
                      ++.... .|+++|+++++++ +++|++++|+||||.+.+ + +   ++  ++..+.|+++.... ....+..+.++++.|
T Consensus       178 ~~~~~~-~d~~~l~~~~~~~-~k~v~l~~p~NPtG~~~~-~-~---l~--~~~~i~d~~~~~~~~s~~~~~~~~~i~~~S  248 (427)
T 2hox_A          178 KGYVWA-GNAANYVNVSNPE-QYIEMVTSPNNPEGLLRH-A-V---IK--GCKSIYDMVYYWPHYTPIKYKADEDILLFT  248 (427)
T ss_dssp             TTEEEE-EEGGGGTTCSCGG-GEEEEEESSCTTTCCCCC-C-S---ST--TCEEEEECTTCSTTTSCCCSCBCCSEEEEE
T ss_pred             eeeeec-CCHHHHHHhhcCC-ceEEEEcCCCCCcccccH-H-H---Hc--CCCEEEeecccCCCCCccccCCCceEEEEe
Confidence            433222 3678888888764 899999999999999999 4 2   32  56789999865321 111122467999999


Q ss_pred             CccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHH---------------HHHHHHHHHHHHH
Q 012296          355 ATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---------------LHLRVQQQNSTAL  418 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~t---------------l~~R~~~~~~na~  418 (466)
                      +||.++.+|. +.|++++ +++++++++..+.......+....+++...|+.               +....+++.++++
T Consensus       249 ~SK~~g~~G~-RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  327 (427)
T 2hox_A          249 MSKFTGHSGS-RFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWV  327 (427)
T ss_dssp             HHHHTSCGGG-CCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHH
T ss_pred             ChhcCCCCCc-eEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHH
Confidence            9999998874 5788888 589999998877665444555544443333332               2334466778889


Q ss_pred             HHHHHHHcCCCe
Q 012296          419 RMAKILEAHPKV  430 (466)
Q Consensus       419 ~La~~L~~~p~V  430 (466)
                      .+.+.|+++|++
T Consensus       328 ~l~~~L~~~~g~  339 (427)
T 2hox_A          328 NITALLDQSDRF  339 (427)
T ss_dssp             HHHHHHTTSSSE
T ss_pred             HHHHHHHhCcCc
Confidence            999999988665

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.75  E-value=4.3e-17  Score=172.22  Aligned_cols=225  Identities=16%  Similarity=0.195  Sum_probs=159.1

Q ss_pred             CccccCCCchhHHHHHHHH----HhhhCCC------------cEEEeCCHHHHHHHHHHHHcc-----------------
Q 012296          201 SFEYGRYGNPTTVVVEEKM----SALEGAE------------STVIMASGMSASTVMLLALVP-----------------  247 (466)
Q Consensus       201 ~~~Y~R~~np~~~~Lee~L----A~l~g~e------------~~l~~sSGs~Ai~~al~all~-----------------  247 (466)
                      .+.|.  ..|...++|+.+    ++++|.+            ..+++++|++|+..++.+...                 
T Consensus       107 ~~~~~--~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~  184 (481)
T 4e1o_A          107 GFTWA--SSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESS  184 (481)
T ss_dssp             CSSTT--TCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHH
T ss_pred             cCCcC--CCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCccccccc
Confidence            34454  467777776655    5667764            457888999988887776532                 


Q ss_pred             --CCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-----CCHHHHHHhhcCCC-----ceEEEEeCCCCCCcccccH
Q 012296          248 --AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNN-----VSLFFTESPTNPFLRCVDV  315 (466)
Q Consensus       248 --~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~Dle~Le~ai~~~~-----tklV~lesP~NPtG~v~dl  315 (466)
                        +++.|+++...|.+......    ..|++++.++.     .|+++|+++|++++     +.+|+++.++|++|.+.|+
T Consensus       185 ~~~~~~v~~s~~~H~s~~~~~~----~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l  260 (481)
T 4e1o_A          185 LNARLVAYASDQAHSSVEKAGL----ISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCL  260 (481)
T ss_dssp             HHTTEEEEEETTSCHHHHHHHH----HHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCH
T ss_pred             ccCCeEEEEcCcchHHHHHHHH----hCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCH
Confidence              56799999999998665442    35778888874     38999999997531     6788889999999999999


Q ss_pred             HHHHHHHHhcCCEEEEeCCCCCCCcc----cccccC---CcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH-HHh
Q 012296          316 KLVSDLCHKKGAIVCIDGTFATPLNQ----KALSLG---ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HVL  387 (466)
Q Consensus       316 ~~Ia~la~~~gillIvDea~a~~~~~----~~l~~g---aDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~-~~~  387 (466)
                      ++|+++|++||+++++|++|+.....    .....|   +|.++.++||+++++.+. +++++.+++++.+..... ..+
T Consensus       261 ~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~-g~l~~~~~~~l~~~~~~~~~yl  339 (481)
T 4e1o_A          261 SELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDC-TGFWVKDKYKLQQTFSVNPIYL  339 (481)
T ss_dssp             HHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSC-EEEEESBHHHHHTTTCCCCGGG
T ss_pred             HHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCce-EEEEEeCHHHHHHHhcCCchhc
Confidence            99999999999999999998765321    112224   599999999999988643 444555555543211100 000


Q ss_pred             ------------------CCCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 012296          388 ------------------GGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKR  432 (466)
Q Consensus       388 ------------------G~~lsp~~a~l~l~--~L~tl~~R~~~~~~na~~La~~L~~~p~V~~  432 (466)
                                        +........|.+++  +.+.+..++++..++++.+.+.|++.|+++.
T Consensus       340 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  404 (481)
T 4e1o_A          340 RHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEI  404 (481)
T ss_dssp             CCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEC
T ss_pred             cCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence                              11112344555444  5567788899999999999999999988754

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.75  E-value=8.5e-17  Score=166.12  Aligned_cols=225  Identities=13%  Similarity=0.122  Sum_probs=142.5

Q ss_pred             CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc--------cCCCEEEEcCCCCcchHHHHHhhccc---
Q 012296          206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRKTRIFIETVLPK---  272 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all--------~~Gd~Vlv~~~~y~~t~~~~~~~l~~---  272 (466)
                      ++.++...+|+++|+++++.  ++++++++|++|+..++..++        .++|+||+.++.|++........-..   
T Consensus        68 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~  147 (430)
T 3i4j_A           68 QFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGAR  147 (430)
T ss_dssp             TCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-----------------
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCcccc
Confidence            56788899999999999864  677777888999999998876        34789999999998743221110000   


Q ss_pred             ------CCc--eEEEeCCC--------CHHHHHHhhcC---CCceEEEEeCCCC-CCccccc----HHHHHHHHHhcCCE
Q 012296          273 ------MGI--TATVIDPA--------DMEGLEAALNN---NNVSLFFTESPTN-PFLRCVD----VKLVSDLCHKKGAI  328 (466)
Q Consensus       273 ------~Gi--~v~~vd~~--------Dle~Le~ai~~---~~tklV~lesP~N-PtG~v~d----l~~Ia~la~~~gil  328 (466)
                            ...  .+..++..        |+++|++++++   .++++|+++.++| ++|.+.+    +++|.++|++||++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~  227 (430)
T 3i4j_A          148 RELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGII  227 (430)
T ss_dssp             --------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCE
T ss_pred             ccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence                  000  22233332        34888888862   3478888888788 8898776    99999999999999


Q ss_pred             EEEeCCCCCCCc------cccc-ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHH----HHHhCCCchHHHHH
Q 012296          329 VCIDGTFATPLN------QKAL-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL----HHVLGGALNPNAAY  397 (466)
Q Consensus       329 lIvDea~a~~~~------~~~l-~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~----~~~~G~~lsp~~a~  397 (466)
                      ||+||+|.....      .... ....|++  +++|.+++ |-.+.|++++++++++.+...    ........++..+.
T Consensus       228 li~DEv~~~~~~~g~~~~~~~~~~~~~di~--t~sK~l~~-G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~a  304 (430)
T 3i4j_A          228 FIADEVMSGMGRCGSPLALSRWSGVTPDIA--VLGKGLAA-GYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVA  304 (430)
T ss_dssp             EEEECTTTTTTTTSSSSGGGGTTTCCCSEE--EECGGGTT-TSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHH
T ss_pred             EEEechhhCCCcccchhhhhhhcCCCCcEE--EEcccccC-CccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHH
Confidence            999999764211      1112 2235666  47799986 413568889999999988763    11112234566555


Q ss_pred             HHHHhhHHHH--HHHHHHHHHHHHHHHHHH----cCCCeEEE
Q 012296          398 LIIRGMKTLH--LRVQQQNSTALRMAKILE----AHPKVKRV  433 (466)
Q Consensus       398 l~l~~L~tl~--~R~~~~~~na~~La~~L~----~~p~V~~V  433 (466)
                      +++..++.+.  ..+++..++.+.+.+.|+    ++|.+..+
T Consensus       305 aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  346 (430)
T 3i4j_A          305 AGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQV  346 (430)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            5555555332  234445555555555444    56665443

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.75  E-value=2.6e-17  Score=171.58  Aligned_cols=225  Identities=15%  Similarity=0.118  Sum_probs=142.4

Q ss_pred             cCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc----CC----CEEEEcCCCCcchHHHHHhh-----
Q 012296          205 GRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP----AG----GHIVTTTDCYRKTRIFIETV-----  269 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g--~e~~l~~sSGs~Ai~~al~all~----~G----d~Vlv~~~~y~~t~~~~~~~-----  269 (466)
                      .++.++...+|+++|+++++  .+.+++++||++|+..++..++.    +|    |+||+.++.|++........     
T Consensus        82 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~  161 (448)
T 3dod_A           82 LGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIEL  161 (448)
T ss_dssp             SSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC------------------
T ss_pred             cccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCcc
Confidence            45667889999999999985  36788889999999999988765    45    99999999998743211100     


Q ss_pred             ----cccCCceEEEeCCC----------------CHHHHHHhhc--CCCceEEEEeCCC-CCCccccc----HHHHHHHH
Q 012296          270 ----LPKMGITATVIDPA----------------DMEGLEAALN--NNNVSLFFTESPT-NPFLRCVD----VKLVSDLC  322 (466)
Q Consensus       270 ----l~~~Gi~v~~vd~~----------------Dle~Le~ai~--~~~tklV~lesP~-NPtG~v~d----l~~Ia~la  322 (466)
                          .......+..++..                |+++|+++++  ..++++|++|.++ |++|.+.+    +++|.++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~  241 (448)
T 3dod_A          162 FHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELC  241 (448)
T ss_dssp             -----------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHH
T ss_pred             ccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHH
Confidence                00001122233322                3788999886  2347899999888 88987765    99999999


Q ss_pred             HhcCCEEEEeCCCCCCC------cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHH-------HHHHhCC
Q 012296          323 HKKGAIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-------LHHVLGG  389 (466)
Q Consensus       323 ~~~gillIvDea~a~~~------~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~-------~~~~~G~  389 (466)
                      ++||++||+||++....      .........|++  +++|.+++ |....|++++++++++.+..       .......
T Consensus       242 ~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~--t~sK~l~~-G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~  318 (448)
T 3dod_A          242 TTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLM--AAGKGITG-GYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSY  318 (448)
T ss_dssp             HHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTT
T ss_pred             HHhCCEEEEeccccCCCcccchhhhhhcCCCCCEE--EecccccC-CcCceEEEEECHHHHHHhhhccccCCcccccCCC
Confidence            99999999999976321      112222335666  46799986 43357899999999887754       2111122


Q ss_pred             CchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHH---cCCCeEE
Q 012296          390 ALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILE---AHPKVKR  432 (466)
Q Consensus       390 ~lsp~~a~l~l~~L~tl~--~R~~~~~~na~~La~~L~---~~p~V~~  432 (466)
                      ..++..+.+++..++.+.  ..+++..++.+++.+.|+   ++|.+..
T Consensus       319 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  366 (448)
T 3dod_A          319 TGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGD  366 (448)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred             CcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            345666666666665442  234555555555555554   4555443

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.75  E-value=4.5e-17  Score=169.66  Aligned_cols=216  Identities=18%  Similarity=0.214  Sum_probs=141.7

Q ss_pred             CCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHH---HccCCCEEEEcCCCCcchHHHHHhhc------c-cCCc
Q 012296          207 YGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLA---LVPAGGHIVTTTDCYRKTRIFIETVL------P-KMGI  275 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~-g~e~~l~~sSGs~Ai~~al~a---ll~~Gd~Vlv~~~~y~~t~~~~~~~l------~-~~Gi  275 (466)
                      +.++..+++.+++++++ +.++++++++|++|+.+++..   +. .+++||+.++.|++.........      . ..|+
T Consensus        94 ~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~  172 (453)
T 2cy8_A           94 ASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFT-GRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGV  172 (453)
T ss_dssp             SSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHH-CCCEEEEECC-------------------------
T ss_pred             CCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhh-CCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCC
Confidence            46778888898988887 457788888999999999887   44 45788888899986432211100      0 0133


Q ss_pred             ------eEEEeCCCCHHHHHHhhcC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCc---
Q 012296          276 ------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN---  340 (466)
Q Consensus       276 ------~v~~vd~~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~~---  340 (466)
                            .+..++..|+++|++++++  .++++|+++..+|++|.+.+    +++|.++|++||++||+||++.....   
T Consensus       173 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~  252 (453)
T 2cy8_A          173 LPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNH  252 (453)
T ss_dssp             ---CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTT
T ss_pred             CccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCch
Confidence                  2444555789999999873  24788888777778998887    99999999999999999999874311   


Q ss_pred             --ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHH---HHHHhC--CCchHHHHHHHHHhhHH-H-HHHHH
Q 012296          341 --QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---LHHVLG--GALNPNAAYLIIRGMKT-L-HLRVQ  411 (466)
Q Consensus       341 --~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~---~~~~~G--~~lsp~~a~l~l~~L~t-l-~~R~~  411 (466)
                        ........|++  |++|++++ | ..+|++++++++++.+..   .....+  ...++..+.+++..++. + +..++
T Consensus       253 ~~~~~~~~~~di~--s~sK~l~~-G-~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~~~~~~~  328 (453)
T 2cy8_A          253 GMQALLDVQPDLT--CLAKASAG-G-LPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCA  328 (453)
T ss_dssp             HHHHHHTCCCSEE--EEEGGGGT-T-SSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHHHTTHHH
T ss_pred             hhhHHhCCCCcEE--EEChhhhC-C-cceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHhhhhHHH
Confidence              11122346765  78899997 4 358999999998876654   111111  23456666666666665 3 33456


Q ss_pred             HHHHHHHHHHHHHHcC
Q 012296          412 QQNSTALRMAKILEAH  427 (466)
Q Consensus       412 ~~~~na~~La~~L~~~  427 (466)
                      +..++.+.+.+.|++.
T Consensus       329 ~~~~~~~~l~~~L~~~  344 (453)
T 2cy8_A          329 KINDLGQFAREAMNHL  344 (453)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6677777787777653

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.75  E-value=2.2e-17  Score=182.20  Aligned_cols=212  Identities=13%  Similarity=0.142  Sum_probs=156.5

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC---
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  283 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---  283 (466)
                      +.....++|+.+|+++|+++++++++|+ .|+.+++.+++++||+|++++++|.+....    +...|.++.+++..   
T Consensus       193 ~~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~----l~lsGa~pv~v~~~~~~  268 (715)
T 3n75_A          193 HSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHL----MMMSDVTPIYFRPTRNA  268 (715)
T ss_dssp             TBTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH----HHHSCCEEEEECCCBCT
T ss_pred             CcHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHH----HHHcCCEEEEEeccccc
Confidence            4566889999999999999999999996 899999999999999999999999987754    34568888877632   


Q ss_pred             ------------CHHHHHHhhcCC-Cce---EEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc------
Q 012296          284 ------------DMEGLEAALNNN-NVS---LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ------  341 (466)
Q Consensus       284 ------------Dle~Le~ai~~~-~tk---lV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~------  341 (466)
                                  |+++|+++++++ +++   +|++++| |++|.+.|+++|+++|++++  +++|++|+.++..      
T Consensus       269 ~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~  345 (715)
T 3n75_A          269 YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEG  345 (715)
T ss_dssp             TCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTT
T ss_pred             cccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCcccc
Confidence                        789999999743 244   8999999 89999999999999998764  7999998865421      


Q ss_pred             -cccccC--CcEE---EECCccccCccccceeEEEEeCHHH-HHHHHHHHHHhC-CCchHHHHHH---HHHhhH--HHHH
Q 012296          342 -KALSLG--ADLV---LHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLG-GALNPNAAYL---IIRGMK--TLHL  408 (466)
Q Consensus       342 -~~l~~g--aDiv---v~S~sK~lgg~gdv~gG~ivg~~el-i~~l~~~~~~~G-~~lsp~~a~l---~l~~L~--tl~~  408 (466)
                       ..+..|  +|++   ++|+||++++..  .+|++..++++ .+++......+. +.+++.....   +.+.++  .-..
T Consensus       346 ~~al~~g~~aD~vii~~~S~hKtL~glt--qgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~  423 (715)
T 3n75_A          346 KCGMSGGRVEGKVIYETQSTHKLLAAFS--QASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKR  423 (715)
T ss_dssp             SSTTSSSCCTTCEEEEEECHHHHSSCCT--TCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHH
T ss_pred             ccccccCcCCCEEEEEEecccccccCCC--CeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccHH
Confidence             123333  6766   999999999864  46887775542 234444444443 3344332221   122232  2345


Q ss_pred             HHHHHHHHHHHHHHHHHcCC
Q 012296          409 RVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       409 R~~~~~~na~~La~~L~~~p  428 (466)
                      ++++..++++.+.+.|++++
T Consensus       424 ~~~~l~~~a~~~r~~L~~i~  443 (715)
T 3n75_A          424 LINGSIERAIKFRKEIKRLR  443 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            67888889999999888765

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.75  E-value=1.1e-17  Score=168.39  Aligned_cols=204  Identities=12%  Similarity=0.069  Sum_probs=140.6

Q ss_pred             hHHHHHHHHHhhhCCC---cEEEeC-CHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC---
Q 012296          211 TTVVVEEKMSALEGAE---STVIMA-SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  283 (466)
Q Consensus       211 ~~~~Lee~LA~l~g~e---~~l~~s-SGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---  283 (466)
                      ..+++++.+++++|.+   ++++++ +|++++.+++.+++++||+|++..+.|.+.+  +...++..| ++++++..   
T Consensus        50 ~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g-~~~~v~~~~~~  126 (362)
T 2c0r_A           50 VHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASK--ALKEAKLIG-DTHVAASSEAS  126 (362)
T ss_dssp             HHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHHS-CEEEEEECGGG
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHH--HHHHHHHhC-CeEEEeccccc
Confidence            4678999999999985   445665 5569999999999999999998876655432  112334456 66655321   


Q ss_pred             ------CHHHHHHhhcCCCceEEEEeCCCCCCccc-ccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCc
Q 012296          284 ------DMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSAT  356 (466)
Q Consensus       284 ------Dle~Le~ai~~~~tklV~lesP~NPtG~v-~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~s  356 (466)
                            |.++++  +++ +|++|++++|+||||.+ .|+++|      +|+++|+|++|+.+.....+. ..|+++.|+|
T Consensus       127 ~~~~~~~~~~~~--i~~-~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~~~-~~d~~~~s~~  196 (362)
T 2c0r_A          127 NYMTLPKLQEIQ--LQD-NAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRPFDLN-QFGLVYAGAQ  196 (362)
T ss_dssp             TTCSCCCGGGCC--CCT-TEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSCCCGG-GCSEEEEETT
T ss_pred             ccccCCCHHHcc--cCC-CcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCCccchh-HCcEEEEecc
Confidence                  334432  565 49999999999999996 677776      899999999987653321122 2489999999


Q ss_pred             cccCccccceeEEEEeCHHHHHHHHHH------------HHHhCCCchHHHHHHHHHhhH------HHHHHHHHHHHHHH
Q 012296          357 KFIGGHNDVLAGSISGSGKLVTQIRNL------------HHVLGGALNPNAAYLIIRGMK------TLHLRVQQQNSTAL  418 (466)
Q Consensus       357 K~lgg~gdv~gG~ivg~~eli~~l~~~------------~~~~G~~lsp~~a~l~l~~L~------tl~~R~~~~~~na~  418 (466)
                      |+++++|   .|+++++++++++++..            .....++.+....+.+...++      .++.+.++..++++
T Consensus       197 K~~g~~G---~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~  273 (362)
T 2c0r_A          197 KNLGPSG---VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKAS  273 (362)
T ss_dssp             TTTCCSS---CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             ccccCcC---cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            9998665   58999888876554321            111223444444333333333      25667778888999


Q ss_pred             HHHHHHHcCCCe
Q 012296          419 RMAKILEAHPKV  430 (466)
Q Consensus       419 ~La~~L~~~p~V  430 (466)
                      .+.+.|++++++
T Consensus       274 ~l~~~L~~~~~~  285 (362)
T 2c0r_A          274 LIYDAIDQSGGF  285 (362)
T ss_dssp             HHHHHHHTSTTS
T ss_pred             HHHHHHHHcCCc
Confidence            999999988633

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.74  E-value=1.2e-16  Score=165.07  Aligned_cols=218  Identities=11%  Similarity=0.125  Sum_probs=144.4

Q ss_pred             cCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhc----------
Q 012296          205 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL----------  270 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l----------  270 (466)
                      ..+.++...++++.|+++++.  ++++++++|++|+..++..+.  ..+|+||+.++.|++.........          
T Consensus        80 ~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~  159 (433)
T 1zod_A           80 SEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGP  159 (433)
T ss_dssp             TTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCC
T ss_pred             cccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCC
Confidence            355677889999999999974  567777788999999988653  346899999999987432221110          


Q ss_pred             ccCCceEEEeCC------C---------CHHHHHHhhcC---CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCE
Q 012296          271 PKMGITATVIDP------A---------DMEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAI  328 (466)
Q Consensus       271 ~~~Gi~v~~vd~------~---------Dle~Le~ai~~---~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gil  328 (466)
                      ...|+....++.      .         |+++|++++++   .++++|+++..+||+|.+.+    +++|.++|++||++
T Consensus       160 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~  239 (433)
T 1zod_A          160 AAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGML  239 (433)
T ss_dssp             CCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCE
T ss_pred             CCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCE
Confidence            011333322221      1         48899998873   34788888666688997665    99999999999999


Q ss_pred             EEEeCCCCCCCc------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHH--hCCCchHHHHHHHH
Q 012296          329 VCIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLII  400 (466)
Q Consensus       329 lIvDea~a~~~~------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~--~G~~lsp~~a~l~l  400 (466)
                      ||+||+|.....      ........|++  |++|.+++ | ...|++++++++++.+......  .....++..+.+++
T Consensus       240 li~DEv~~~~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G-~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~  315 (433)
T 1zod_A          240 LILDEAQTGVGRTGTMFACQRDGVTPDIL--TLSKTLGA-G-LPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGL  315 (433)
T ss_dssp             EEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECHHHHT-T-SSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHH
T ss_pred             EEEeccccCCCcCchHhHHhhcCCCCCEE--EecccccC-C-CCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHH
Confidence            999999874211      11122345654  78899997 4 4579999999998888653211  11223555555444


Q ss_pred             HhhHHHH--HHHHHHHHHHHHHHHHHHc
Q 012296          401 RGMKTLH--LRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       401 ~~L~tl~--~R~~~~~~na~~La~~L~~  426 (466)
                      ..++.+.  ..+++..++.+.+.+.|++
T Consensus       316 aal~~~~~~~~~~~~~~~~~~l~~~l~~  343 (433)
T 1zod_A          316 RVLDVVQRDGLVARANVMGDRLRRGLLD  343 (433)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            4444332  2345566667777776654

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.74  E-value=5.2e-17  Score=167.89  Aligned_cols=216  Identities=16%  Similarity=0.158  Sum_probs=144.4

Q ss_pred             CCchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHH----------hhcccC
Q 012296          207 YGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIE----------TVLPKM  273 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g-~e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~----------~~l~~~  273 (466)
                      +.++...+|+++|+++++ .++++++++|++|+..++....  ..+++||+.++.|++......          ......
T Consensus        90 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  169 (429)
T 4e77_A           90 APTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSP  169 (429)
T ss_dssp             SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCT
T ss_pred             CCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcC
Confidence            567889999999999984 5778888899999999987543  467789999999987542110          000011


Q ss_pred             C------ceEEEeCCCCHHHHHHhhcC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC---
Q 012296          274 G------ITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP---  338 (466)
Q Consensus       274 G------i~v~~vd~~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~---  338 (466)
                      +      ..+..++..|+++|++++++  .++++|+++..++.+|.+.+    +++|.++|++||++||+||++...   
T Consensus       170 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g  249 (429)
T 4e77_A          170 GVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVA  249 (429)
T ss_dssp             TSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTB
T ss_pred             CCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccC
Confidence            1      13445566789999999873  24777777655555677777    999999999999999999998732   


Q ss_pred             Cc--ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH-HhC--CCchHHHHHHHHHhhHHH--HHHHH
Q 012296          339 LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLG--GALNPNAAYLIIRGMKTL--HLRVQ  411 (466)
Q Consensus       339 ~~--~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~-~~G--~~lsp~~a~l~l~~L~tl--~~R~~  411 (466)
                      ..  ........|++  |++|.+++ | ..+|++++++++++.+..... ..+  ...++..+..++..++.+  +..++
T Consensus       250 ~~~~~~~~~~~pdi~--t~sK~~~~-G-~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~  325 (429)
T 4e77_A          250 LAGAQDYYHVIPDLT--CLGKIIGG-G-MPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYE  325 (429)
T ss_dssp             TTCHHHHTTCCCSEE--EEEGGGGT-T-SCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHH
T ss_pred             cchHHHhcCCCCCee--eecccccC-C-CCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence            11  11222335665  78899995 4 467899999999887654211 111  245666666666666544  33455


Q ss_pred             HHHHHHHHHHHHHHc
Q 012296          412 QQNSTALRMAKILEA  426 (466)
Q Consensus       412 ~~~~na~~La~~L~~  426 (466)
                      +..++.+++.+.|++
T Consensus       326 ~~~~~~~~l~~~L~~  340 (429)
T 4e77_A          326 TLTELTDSLATGLRH  340 (429)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            566666666666654

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.74  E-value=1.1e-16  Score=166.57  Aligned_cols=225  Identities=13%  Similarity=0.166  Sum_probs=149.2

Q ss_pred             cCCCchhHHHHHHHHHhhhCCC-cEEEeCCHHHHHHHHHHHHc-----c---CCCEEEEcCCCCcchHHHHHhhc-----
Q 012296          205 GRYGNPTTVVVEEKMSALEGAE-STVIMASGMSASTVMLLALV-----P---AGGHIVTTTDCYRKTRIFIETVL-----  270 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~e-~~l~~sSGs~Ai~~al~all-----~---~Gd~Vlv~~~~y~~t~~~~~~~l-----  270 (466)
                      ..+.++...+|+++|+++++.+ +++++++|++|+..++..++     .   ++|+|++.++.|++........-     
T Consensus        86 ~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~  165 (452)
T 3n5m_A           86 MSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQR  165 (452)
T ss_dssp             TTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGG
T ss_pred             cccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhh
Confidence            4567788999999999998752 37777888899999998876     4   78999999999987432221110     


Q ss_pred             ----ccCCceEEEeCC--------CC---------HHHHHHhhc---CCCceEEEEeCC-CCCCccccc----HHHHHHH
Q 012296          271 ----PKMGITATVIDP--------AD---------MEGLEAALN---NNNVSLFFTESP-TNPFLRCVD----VKLVSDL  321 (466)
Q Consensus       271 ----~~~Gi~v~~vd~--------~D---------le~Le~ai~---~~~tklV~lesP-~NPtG~v~d----l~~Ia~l  321 (466)
                          ......+..++.        .|         +++|+++++   ..++++|++|.+ +| +|.+.+    +++|.++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l  244 (452)
T 3n5m_A          166 RYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHET  244 (452)
T ss_dssp             TTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHH
T ss_pred             ccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHH
Confidence                001112333332        23         899999987   234899999998 89 998886    9999999


Q ss_pred             HHhcCCEEEEeCCCCCCC------cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHH---HHH-HhC--C
Q 012296          322 CHKKGAIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---LHH-VLG--G  389 (466)
Q Consensus       322 a~~~gillIvDea~a~~~------~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~---~~~-~~G--~  389 (466)
                      |++||++||+||++....      .........|++  +++|.+++ |-...|++++++++++.+..   ... ..+  .
T Consensus       245 ~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~-G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~  321 (452)
T 3n5m_A          245 CQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDII--TMAKGITS-AYLPLSATAVKREIYEAFKGKGEYEFFRHINTF  321 (452)
T ss_dssp             HHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSS
T ss_pred             HHHcCCEEEEecchhCCCcccccchhhhcCCCCCEE--eecccccC-CCcceEEEEECHHHHHHHhhccCCCCccccCCC
Confidence            999999999999976421      111222235666  47899987 42356888899999887743   111 112  2


Q ss_pred             CchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHH----cCCCeEEE
Q 012296          390 ALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILE----AHPKVKRV  433 (466)
Q Consensus       390 ~lsp~~a~l~l~~L~tl~--~R~~~~~~na~~La~~L~----~~p~V~~V  433 (466)
                      ..++..+..++..++.+.  ..+++..++.+.+.+.|+    ++|.+..+
T Consensus       322 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  371 (452)
T 3n5m_A          322 GGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDI  371 (452)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            346666666555555432  234555555555555554    45655443

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.74  E-value=8.8e-17  Score=169.73  Aligned_cols=221  Identities=13%  Similarity=0.078  Sum_probs=154.2

Q ss_pred             CchhHHHHHHH----HHhhhCCC-----------cEEEeCCHHHHHHHHHHHHc-------------------cCCCEEE
Q 012296          208 GNPTTVVVEEK----MSALEGAE-----------STVIMASGMSASTVMLLALV-------------------PAGGHIV  253 (466)
Q Consensus       208 ~np~~~~Lee~----LA~l~g~e-----------~~l~~sSGs~Ai~~al~all-------------------~~Gd~Vl  253 (466)
                      ..|...++|+.    +++++|.+           ..+++++|++|+..++.+..                   .+++.|+
T Consensus       107 ~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi  186 (475)
T 3k40_A          107 ASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGY  186 (475)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEE
T ss_pred             CCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEE
Confidence            46777777765    46777775           47888999988887776652                   1346899


Q ss_pred             EcCCCCcchHHHHHhhcccCCceEEEeCC----CCHHHHHHhhcCC-----CceEEEEeCCCCCCcccccHHHHHHHHHh
Q 012296          254 TTTDCYRKTRIFIETVLPKMGITATVIDP----ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHK  324 (466)
Q Consensus       254 v~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----~Dle~Le~ai~~~-----~tklV~lesP~NPtG~v~dl~~Ia~la~~  324 (466)
                      ++...|.+.....    ...|++++.++.    .|+++|+++|+++     .+.+|++..++|++|.+.|+++|+++|++
T Consensus       187 ~s~~~H~s~~~~~----~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~  262 (475)
T 3k40_A          187 CSDQAHSSVERAG----LLGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNK  262 (475)
T ss_dssp             EETTSCHHHHHHH----HHHTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH
T ss_pred             ECCCchHHHHHHH----HHcCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHH
Confidence            9999999866544    335788888876    4899999998753     15788889999999999999999999999


Q ss_pred             cCCEEEEeCCCCCCCccc----cccc---CCcEEEECCccccCccccceeEEEEeCHHHH-HHHHHHHHHh-----C---
Q 012296          325 KGAIVCIDGTFATPLNQK----ALSL---GADLVLHSATKFIGGHNDVLAGSISGSGKLV-TQIRNLHHVL-----G---  388 (466)
Q Consensus       325 ~gillIvDea~a~~~~~~----~l~~---gaDivv~S~sK~lgg~gdv~gG~ivg~~eli-~~l~~~~~~~-----G---  388 (466)
                      +|+++++|++|+.+....    ....   .+|.++.++||+++++.+. |++++.+++++ +.+......+     +   
T Consensus       263 ~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~-g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~  341 (475)
T 3k40_A          263 HNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDC-SAMWLKDPSWVVNAFNVDPLYLKHDMQGSAP  341 (475)
T ss_dssp             TTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSC-EEEEESSGGGC--------------------
T ss_pred             hCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCce-EEEEEeCHHHHHHHhcCCccccCCCcCCCCC
Confidence            999999999987643211    1112   3699999999999987632 34444445443 2221110000     0   


Q ss_pred             --------CC--chHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 012296          389 --------GA--LNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRV  433 (466)
Q Consensus       389 --------~~--lsp~~a~l~l~--~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V  433 (466)
                              .+  ......|.+++  +.+.+..++++..++++++.+.|++.|+++.+
T Consensus       342 ~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~  398 (475)
T 3k40_A          342 DYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELA  398 (475)
T ss_dssp             -------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEES
T ss_pred             CcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence                    00  12334454443  45567788899999999999999999887643

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.73  E-value=2.6e-16  Score=166.01  Aligned_cols=221  Identities=14%  Similarity=0.152  Sum_probs=150.1

Q ss_pred             cccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc--------CCCEEEEcCCCCcchHHHHHhh---
Q 012296          203 EYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV---  269 (466)
Q Consensus       203 ~Y~R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~--------~Gd~Vlv~~~~y~~t~~~~~~~---  269 (466)
                      .+.++.++...+|+++|+++.+.  +.+++++||++|+..++..+..        ++++||+.++.|++........   
T Consensus        92 ~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~  171 (472)
T 3hmu_A           92 TFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGM  171 (472)
T ss_dssp             SSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCC
T ss_pred             cccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCC
Confidence            34566788999999999999854  6788888999999999988764        4689999999998743221111   


Q ss_pred             ------cccCCceEEEeCCC---------C--------HHHHHHhhcC---CCceEEEEeCCCCCCccccc----HHHHH
Q 012296          270 ------LPKMGITATVIDPA---------D--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVS  319 (466)
Q Consensus       270 ------l~~~Gi~v~~vd~~---------D--------le~Le~ai~~---~~tklV~lesP~NPtG~v~d----l~~Ia  319 (466)
                            +. ....+..++..         |        +++|++++++   .++++|++|.++|++|.+.+    +++|.
T Consensus       172 ~~~~~~~~-~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~  250 (472)
T 3hmu_A          172 AGMHAQSG-LIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQ  250 (472)
T ss_dssp             HHHHHTTC-CCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHH
T ss_pred             hhhccccC-CCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHH
Confidence                  11 11123333311         2        7888888862   24889999998888898887    99999


Q ss_pred             HHHHhcCCEEEEeCCCCCCCc------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhC--CCc
Q 012296          320 DLCHKKGAIVCIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG--GAL  391 (466)
Q Consensus       320 ~la~~~gillIvDea~a~~~~------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G--~~l  391 (466)
                      ++|+++|++||+||++.....      ........|+++  ++|.+++++ ...|++++++++++.+.......+  ...
T Consensus       251 ~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t--~sK~l~gg~-~plG~v~~~~~i~~~~~~~~~~~~~t~~~  327 (472)
T 3hmu_A          251 RICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMT--IAKGLSSGY-APIGGSIVCDEVAHVIGKDEFNHGYTYSG  327 (472)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--ECGGGTTTS-SCCEEEEEEHHHHHHHTTSCBCCCCTTTT
T ss_pred             HHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceee--echhhhcCC-cceEEEEECHHHHHhcccCCccccCCCCC
Confidence            999999999999999764211      112233467775  679998764 246888899999988732111122  234


Q ss_pred             hHHHHHHHHHhhHHHH--HHHHHHH-HHHHHHHHHHHcC
Q 012296          392 NPNAAYLIIRGMKTLH--LRVQQQN-STALRMAKILEAH  427 (466)
Q Consensus       392 sp~~a~l~l~~L~tl~--~R~~~~~-~na~~La~~L~~~  427 (466)
                      ++..+..++..|+.+.  ..+++.. ++.+++.+.|++.
T Consensus       328 np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l  366 (472)
T 3hmu_A          328 HPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEAL  366 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGG
T ss_pred             CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666666666443  2355556 6677777777653

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.73  E-value=4.7e-16  Score=164.12  Aligned_cols=219  Identities=13%  Similarity=0.129  Sum_probs=150.2

Q ss_pred             CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc--------CCCEEEEcCCCCcchHHHHHhh------
Q 012296          206 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV------  269 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~g--~e~~l~~sSGs~Ai~~al~all~--------~Gd~Vlv~~~~y~~t~~~~~~~------  269 (466)
                      .+.++...+|+++|+++++  .+.+++++||++|+..++..++.        .+++||+.++.|++........      
T Consensus        93 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~  172 (476)
T 3i5t_A           93 YMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGN  172 (476)
T ss_dssp             TCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGG
T ss_pred             ccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhh
Confidence            5678899999999999985  47788889999999999988763        3679999999998843222111      


Q ss_pred             ---cccCCceEEEeCC-------C-C--------HHHHHHhhcC---CCceEEEEeCCCCCCccccc----HHHHHHHHH
Q 012296          270 ---LPKMGITATVIDP-------A-D--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCH  323 (466)
Q Consensus       270 ---l~~~Gi~v~~vd~-------~-D--------le~Le~ai~~---~~tklV~lesP~NPtG~v~d----l~~Ia~la~  323 (466)
                         .......+.+++.       . +        +++|+++++.   .++++|++|.++|++|.+.+    +++|.++|+
T Consensus       173 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~  252 (476)
T 3i5t_A          173 WPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICE  252 (476)
T ss_dssp             CTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH
T ss_pred             ccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHH
Confidence               0001112333331       1 1        7888888862   34899999999999887665    999999999


Q ss_pred             hcCCEEEEeCCCCCCC----c--cc-ccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH-----HHhC--C
Q 012296          324 KKGAIVCIDGTFATPL----N--QK-ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLG--G  389 (466)
Q Consensus       324 ~~gillIvDea~a~~~----~--~~-~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~-----~~~G--~  389 (466)
                      +||++||+||++....    .  .. ......|+++  ++|.+++ |-...|++++++++++.+....     ...+  .
T Consensus       253 ~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t--~sK~l~~-G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~  329 (476)
T 3i5t_A          253 KHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIIT--FAKGVTS-GYVPLGGLAISEAVLARISGENAKGSWFTNGYTY  329 (476)
T ss_dssp             HTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEE--ECGGGGT-TSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTT
T ss_pred             HcCCEEEEEecccCCccccCceeeecccCCCcchhh--hhhhhcC-CCcCeEEEEECHHHHHHHhcCCcccccccccCCC
Confidence            9999999999976421    1  11 2223467775  6799987 3135688889999988876431     0111  2


Q ss_pred             CchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHcC
Q 012296          390 ALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       390 ~lsp~~a~l~l~~L~tl~--~R~~~~~~na~~La~~L~~~  427 (466)
                      ..+|..+.+++..++.+.  ..+++..++.+++.+.|++.
T Consensus       330 ~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l  369 (476)
T 3i5t_A          330 SNQPVACAAALANIELMEREGIVDQAREMADYFAAALASL  369 (476)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTT
T ss_pred             CcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            346676666666666543  34566677777888877753

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.73  E-value=5.2e-17  Score=168.05  Aligned_cols=216  Identities=16%  Similarity=0.168  Sum_probs=147.7

Q ss_pred             CCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHHHcc--CCCEEEEcCCCCcchHHHHHhh---------cc-cC
Q 012296          207 YGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETV---------LP-KM  273 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~-g~e~~l~~sSGs~Ai~~al~all~--~Gd~Vlv~~~~y~~t~~~~~~~---------l~-~~  273 (466)
                      ++++...+|+++|++++ +.++++++++|++|+..++..+..  ++++|++.++.|++........         .. ..
T Consensus        90 ~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~  169 (429)
T 3k28_A           90 APTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSP  169 (429)
T ss_dssp             SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCT
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcC
Confidence            56888999999999998 457788888999999999987654  6789999999987632111000         00 00


Q ss_pred             Cc------eEEEeCCCCHHHHHHhhcC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCc-
Q 012296          274 GI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN-  340 (466)
Q Consensus       274 Gi------~v~~vd~~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~~-  340 (466)
                      ++      .+..++..|+++|++++++  .++++|+++.++|++|.+.+    +++|.++|++||++||+||+|..... 
T Consensus       170 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g  249 (429)
T 3k28_A          170 GVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVA  249 (429)
T ss_dssp             TCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSS
T ss_pred             CCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Confidence            11      3344555689999998862  24788998888888888887    99999999999999999999864310 


Q ss_pred             ----ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHH-hC--CCchHHHHHHHHHhhHHH-HHHHHH
Q 012296          341 ----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV-LG--GALNPNAAYLIIRGMKTL-HLRVQQ  412 (466)
Q Consensus       341 ----~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~-~G--~~lsp~~a~l~l~~L~tl-~~R~~~  412 (466)
                          ........|++  +++|.+++ | ...|++++++++++.+...... .+  ...++..+..++..++.+ +..+++
T Consensus       250 ~~~~~~~~~~~~di~--t~sK~~~~-G-~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~  325 (429)
T 3k28_A          250 YNCGQGYYGVTPDLT--CLGKVIGG-G-LPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVE  325 (429)
T ss_dssp             TTHHHHHHTCCCSEE--EECGGGGT-T-SCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCCHHHHHH
T ss_pred             cchHHHHhCCCCcee--hhhhhhcC-C-CCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence                11122335665  57899976 4 4678999999998876542211 12  234566555555444422 445566


Q ss_pred             HHHHHHHHHHHHHc
Q 012296          413 QNSTALRMAKILEA  426 (466)
Q Consensus       413 ~~~na~~La~~L~~  426 (466)
                      ..++.+++.+.|++
T Consensus       326 ~~~~~~~l~~~L~~  339 (429)
T 3k28_A          326 FERKAEMLEAGLRK  339 (429)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            67777777777765

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.73  E-value=5.5e-16  Score=160.68  Aligned_cols=217  Identities=16%  Similarity=0.094  Sum_probs=143.0

Q ss_pred             CccccCCCchhHHHHHHHHHhhh-C---C----Cc-EEEeC-CHHHHHHHHHHHHcc--CCCEEEEcCCCCcchHHHHHh
Q 012296          201 SFEYGRYGNPTTVVVEEKMSALE-G---A----ES-TVIMA-SGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIET  268 (466)
Q Consensus       201 ~~~Y~R~~np~~~~Lee~LA~l~-g---~----e~-~l~~s-SGs~Ai~~al~all~--~Gd~Vlv~~~~y~~t~~~~~~  268 (466)
                      .+.|+.  .....+|++.+++++ +   .    ++ .++++ +|+.|+.+++..++.  + |+|++++|.|......   
T Consensus        65 ~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~---  138 (405)
T 3k7y_A           65 EKPYLL--GNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNM---  138 (405)
T ss_dssp             CCCCCT--TSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHH---
T ss_pred             CCCCCC--CCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHH---
Confidence            345663  223346777777764 2   1    22 24444 555999999988877  8 9999999999986543   


Q ss_pred             hcccCCceEEEeCC-------CCHHHHHHhhcC-CCceEEEEeCC-CCCCccccc---HHHHHHHHHhcCCEEEEeCCCC
Q 012296          269 VLPKMGITATVIDP-------ADMEGLEAALNN-NNVSLFFTESP-TNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFA  336 (466)
Q Consensus       269 ~l~~~Gi~v~~vd~-------~Dle~Le~ai~~-~~tklV~lesP-~NPtG~v~d---l~~Ia~la~~~gillIvDea~a  336 (466)
                       ++..|.++..++.       .|+++|++++++ .++++|++.+| |||||.+++   +++|+++|++||+++|+|++|.
T Consensus       139 -~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~  217 (405)
T 3k7y_A          139 -IESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQ  217 (405)
T ss_dssp             -HHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCT
T ss_pred             -HHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcc
Confidence             4456777776643       278999999863 23688888765 899999986   5678889999999999999987


Q ss_pred             CCCccc------cc----cc-CCcEEEECCccccCccccceeEEEE---eCHHHHHHHHH----HHHHhCCCchHHHHHH
Q 012296          337 TPLNQK------AL----SL-GADLVLHSATKFIGGHNDVLAGSIS---GSGKLVTQIRN----LHHVLGGALNPNAAYL  398 (466)
Q Consensus       337 ~~~~~~------~l----~~-gaDivv~S~sK~lgg~gdv~gG~iv---g~~eli~~l~~----~~~~~G~~lsp~~a~l  398 (466)
                      ......      +.    .. ...+++.|+||.|+.+|++ .||++   .++++++++..    .....-...+.+.+.+
T Consensus       218 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR-iG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~  296 (405)
T 3k7y_A          218 GFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGER-AGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRI  296 (405)
T ss_dssp             TTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTT-EEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred             cccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCcccc-ceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Confidence            543210      11    11 2458899999999988865 67764   36777665543    2211112223333322


Q ss_pred             HHHhh----------HHHHHHHHHHHHHHHHHHHHHH
Q 012296          399 IIRGM----------KTLHLRVQQQNSTALRMAKILE  425 (466)
Q Consensus       399 ~l~~L----------~tl~~R~~~~~~na~~La~~L~  425 (466)
                      +...+          +.+....++..++++.+.+.|+
T Consensus       297 ~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~  333 (405)
T 3k7y_A          297 LCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLE  333 (405)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22211          2233344567788899999998

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.73  E-value=1.3e-16  Score=166.72  Aligned_cols=228  Identities=13%  Similarity=0.085  Sum_probs=145.2

Q ss_pred             ccccCCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHHcc--CCCEEEEcCCCCcchHHHHHhh-------
Q 012296          202 FEYGRYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETV-------  269 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~g---~e~~l~~sSGs~Ai~~al~all~--~Gd~Vlv~~~~y~~t~~~~~~~-------  269 (466)
                      +.+.++.++...+|+++|+++++   .+++++++||++|+.+++...+.  .+++|++.++.|++........       
T Consensus        96 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~  175 (451)
T 3oks_A           96 TCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPY  175 (451)
T ss_dssp             CTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred             ccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCccc
Confidence            34456778889999999999986   25788889999999999976653  4589999999998743322111       


Q ss_pred             ---cccCCceEEEeCCC------------------CHHHHHHhh----cCCCceEEEEeCCCCCCccccc----HHHHHH
Q 012296          270 ---LPKMGITATVIDPA------------------DMEGLEAAL----NNNNVSLFFTESPTNPFLRCVD----VKLVSD  320 (466)
Q Consensus       270 ---l~~~Gi~v~~vd~~------------------Dle~Le~ai----~~~~tklV~lesP~NPtG~v~d----l~~Ia~  320 (466)
                         .......+..++..                  +++.+++.+    ..+++++|++|..++..|.+.+    +++|.+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~  255 (451)
T 3oks_A          176 KDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLD  255 (451)
T ss_dssp             TTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred             ccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHH
Confidence               01111134444332                  233333443    3334677777666555666665    999999


Q ss_pred             HHHhcCCEEEEeCCCCCCC------cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHH
Q 012296          321 LCHKKGAIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN  394 (466)
Q Consensus       321 la~~~gillIvDea~a~~~------~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~  394 (466)
                      +|++||++||+||+|....      .........|++  |++|.+++ | .+.|++++++++++.+...........++.
T Consensus       256 l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~-G-~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~  331 (451)
T 3oks_A          256 WCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLI--VTAKGIAG-G-LPLSAVTGRAEIMDSPHVSGLGGTYGGNPI  331 (451)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-T-SSCEEEEEEHHHHTCSCTTSBCCSSSSCHH
T ss_pred             HHHHcCCEEEEEecccCCCccccchhhhhcCCCCCee--eehhhhhC-C-cceEEEEECHHHHhhhcCCCcCCCCCCCHH
Confidence            9999999999999976421      112222345666  67899987 4 457888899998887654332222344666


Q ss_pred             HHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHH----cCCCeEEE
Q 012296          395 AAYLIIRGMKTLH--LRVQQQNSTALRMAKILE----AHPKVKRV  433 (466)
Q Consensus       395 ~a~l~l~~L~tl~--~R~~~~~~na~~La~~L~----~~p~V~~V  433 (466)
                      .+.+++..++.+.  ..+++..++.+++.+.|+    ++|.+..+
T Consensus       332 ~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  376 (451)
T 3oks_A          332 ACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDV  376 (451)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence            6666665565432  234445555555555554    45655443

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.73  E-value=1.4e-16  Score=165.56  Aligned_cols=213  Identities=15%  Similarity=0.188  Sum_probs=146.0

Q ss_pred             hhHHHHHHHHHhhhCCCcE--EEeCCHHHHHHHHHHH-HccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC---
Q 012296          210 PTTVVVEEKMSALEGAEST--VIMASGMSASTVMLLA-LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  283 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e~~--l~~sSGs~Ai~~al~a-ll~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---  283 (466)
                      +..+++++.+++++|.+..  +++.+|++++.+++.+ .+++||+|+++.+.|+++...+....+..|+++++++..   
T Consensus       108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~  187 (438)
T 1wyu_A          108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGR  187 (438)
T ss_dssp             HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTB
T ss_pred             HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCc
Confidence            4467899999999998643  4555555444444444 357899999999999998776665556679999888742   


Q ss_pred             -CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCC-CCCCCcccccccCCcEEEECCcc----
Q 012296          284 -DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT-FATPLNQKALSLGADLVLHSATK----  357 (466)
Q Consensus       284 -Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea-~a~~~~~~~l~~gaDivv~S~sK----  357 (466)
                       |+++    +++ +|++|++++| ||+|.+.|+++|+++|+++|+++|+|.. .+.+....+..+|+|+++.|.+|    
T Consensus       188 ~d~~~----i~~-~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~~~~g~D~~~~s~kk~~~~  261 (438)
T 1wyu_A          188 TPLPE----VGE-EVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLP  261 (438)
T ss_dssp             CCCCC----CCT-TEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCC
T ss_pred             cCHHH----hCC-CeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCCccCCCCEEEECCcccCCC
Confidence             3333    666 4999999999 9999999999999999999999997744 22222233456789999999555    


Q ss_pred             -ccCccccceeEEEEeCHHHHHHHHHH-------------------------HHHhCC-Cc---hHHH---HHHHHH--h
Q 012296          358 -FIGGHNDVLAGSISGSGKLVTQIRNL-------------------------HHVLGG-AL---NPNA---AYLIIR--G  402 (466)
Q Consensus       358 -~lgg~gdv~gG~ivg~~eli~~l~~~-------------------------~~~~G~-~l---sp~~---a~l~l~--~  402 (466)
                       +++|+   .+|++++++++++.+...                         +...+. ..   ....   ++..+.  +
T Consensus       262 ~~~~Gp---~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~  338 (438)
T 1wyu_A          262 MGFGGP---HFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALG  338 (438)
T ss_dssp             CGGGCS---CCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCC---CeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhC
Confidence             45555   368999998876654210                         111121 11   2222   221122  2


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 012296          403 MKTLHLRVQQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       403 L~tl~~R~~~~~~na~~La~~L~~~p~V~  431 (466)
                      -+.+....++..++++++.+.|++.|+++
T Consensus       339 ~~g~~~~~~~~~~~~~~l~~~L~~~~g~~  367 (438)
T 1wyu_A          339 PEGLREVALKSVEMAHKLHALLLEVPGVR  367 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSTTCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence            23355566778889999999999988775

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.73  E-value=1.1e-16  Score=165.04  Aligned_cols=216  Identities=18%  Similarity=0.165  Sum_probs=147.0

Q ss_pred             CCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHH--HccCCCEEEEcCCCCcchHHHHHhhc----------ccC
Q 012296          207 YGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLA--LVPAGGHIVTTTDCYRKTRIFIETVL----------PKM  273 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~-g~e~~l~~sSGs~Ai~~al~a--ll~~Gd~Vlv~~~~y~~t~~~~~~~l----------~~~  273 (466)
                      +.++...++++.|++++ +.++++++++|++|+..++..  .+.+++.||+.++.|++.........          ...
T Consensus        89 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~  168 (424)
T 2e7u_A           89 APSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSA  168 (424)
T ss_dssp             SCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESST
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCC
Confidence            56788899999999998 567788888999999998875  24456889999999987432110000          012


Q ss_pred             Cc------eEEEeCCCCHHHHHHhhcC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCcc
Q 012296          274 GI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLNQ  341 (466)
Q Consensus       274 Gi------~v~~vd~~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~~~  341 (466)
                      |+      .+..++..|+++|++++++  .++++|+++..++++|.+.+    +++|.++ ++||++||+||++......
T Consensus       169 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g  247 (424)
T 2e7u_A          169 GVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLA  247 (424)
T ss_dssp             TCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSS
T ss_pred             CCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccc
Confidence            32      3445566789999999863  23677777544445898887    9999999 9999999999998743111


Q ss_pred             -----cccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH-HhC-C-CchHHHHHHHHHhhHHHH---HHH
Q 012296          342 -----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLG-G-ALNPNAAYLIIRGMKTLH---LRV  410 (466)
Q Consensus       342 -----~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~-~~G-~-~lsp~~a~l~l~~L~tl~---~R~  410 (466)
                           .......|++  |++|.+++ | ..+|++++++++++.++.... ..+ . ..++..+.+++..++.+.   ...
T Consensus       248 ~~~~~~~~~~~~di~--s~sK~l~~-G-~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~  323 (424)
T 2e7u_A          248 FGGATELLGLKPDLV--TLGKILGG-G-LPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYY  323 (424)
T ss_dssp             TTHHHHHHTCCCSEE--EECGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHH
T ss_pred             hhHHHHHhCCCcchh--hhhhhhhC-C-cceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence                 1112335765  78999996 4 458999999998877654211 111 1 345666555555555443   356


Q ss_pred             HHHHHHHHHHHHHHHcC
Q 012296          411 QQQNSTALRMAKILEAH  427 (466)
Q Consensus       411 ~~~~~na~~La~~L~~~  427 (466)
                      ++..++.+.+.+.|++.
T Consensus       324 ~~~~~~~~~l~~~L~~~  340 (424)
T 2e7u_A          324 AYLEDLGARLEAGLKEV  340 (424)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66777778888777653

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.73  E-value=7e-18  Score=168.93  Aligned_cols=204  Identities=10%  Similarity=0.076  Sum_probs=140.6

Q ss_pred             hHHHHHHHHHhhhCCC--cEE-EeCCH-HHHHHHHHHHHccC---CCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          211 TTVVVEEKMSALEGAE--STV-IMASG-MSASTVMLLALVPA---GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       211 ~~~~Lee~LA~l~g~e--~~l-~~sSG-s~Ai~~al~all~~---Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      ..+++++.+++++|.+  +.+ +++++ ++|+.+++.+++.+   ||+|+++.+.|...     ..+...| ++++++. 
T Consensus        49 ~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~-----~~~~~~g-~~~~v~~~  122 (360)
T 1w23_A           49 VHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL-----KEAKLLG-ETHIAAST  122 (360)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH-----HHHHTTS-EEEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHH-----HHHHHhC-CeEEeecc
Confidence            5788999999999985  344 45555 79999999998865   56677665555431     1234567 7776652 


Q ss_pred             -----CCHHHHHH-hhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCc
Q 012296          283 -----ADMEGLEA-ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSAT  356 (466)
Q Consensus       283 -----~Dle~Le~-ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~s  356 (466)
                           .|+++|++ +++++ +++|++++|+||||.+.+  +   +++++|+++|+|++++.+.....+. ..|+++.|+|
T Consensus       123 ~~~~~~d~~~l~~~~i~~~-~k~v~~~~~~nptG~~~~--~---i~~~~~~~li~D~a~~~~~~~~~~~-~~di~~~s~s  195 (360)
T 1w23_A          123 KANSYQSIPDFSEFQLNEN-DAYLHITSNNTIYGTQYQ--N---FPEINHAPLIADMSSDILSRPLKVN-QFGMIYAGAQ  195 (360)
T ss_dssp             GGGTSCSCCCGGGCCCCTT-EEEEEEESEETTTTEECS--S---CCCCCSSCEEEECTTTTTSSCCCGG-GCSEEEEETT
T ss_pred             cccCcCCccchHhhccCCC-CCEEEEeCCCCCcceecc--c---ccccCCceEEEechhhcCCCCcCcc-cCCEEEEEcc
Confidence                 36788888 88764 999999999999999987  3   3338999999999987653221122 1389999999


Q ss_pred             cccCccccceeEEEEeCHHHHHHHHHHHH------------HhCCCchHHHHHHHHHhhH------HHHHHHHHHHHHHH
Q 012296          357 KFIGGHNDVLAGSISGSGKLVTQIRNLHH------------VLGGALNPNAAYLIIRGMK------TLHLRVQQQNSTAL  418 (466)
Q Consensus       357 K~lgg~gdv~gG~ivg~~eli~~l~~~~~------------~~G~~lsp~~a~l~l~~L~------tl~~R~~~~~~na~  418 (466)
                      |+++++|   .|+++++++++++++....            ...++.+....+.+...++      .++.+.++..++++
T Consensus       196 K~~~~~G---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  272 (360)
T 1w23_A          196 KNLGPSG---VTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAK  272 (360)
T ss_dssp             TTTSCTT---CEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             cccCCCC---cEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9998664   5888888888765543210            1112334433333333333      24556777889999


Q ss_pred             HHHHHHHcCCCe
Q 012296          419 RMAKILEAHPKV  430 (466)
Q Consensus       419 ~La~~L~~~p~V  430 (466)
                      .+.+.|++++++
T Consensus       273 ~l~~~L~~~~~~  284 (360)
T 1w23_A          273 IIYDTIDESNGF  284 (360)
T ss_dssp             HHHHHHHTTTTS
T ss_pred             HHHHHHHHccCc
Confidence            999999988754

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.72  E-value=1.3e-16  Score=164.54  Aligned_cols=215  Identities=17%  Similarity=0.196  Sum_probs=146.4

Q ss_pred             CchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHH----------hhcccCC
Q 012296          208 GNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIE----------TVLPKMG  274 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g-~e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~----------~~l~~~G  274 (466)
                      .++...+|+++|+++++ .++++++++|++|+..++....  ..+++||+.++.|++......          ......+
T Consensus        90 ~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~  169 (427)
T 3fq8_A           90 PCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPG  169 (427)
T ss_dssp             CCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSS
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCC
Confidence            78889999999999985 4678888899999999885332  345789998989876321110          0000111


Q ss_pred             c------eEEEeCCCCHHHHHHhhcCC--CceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCc--
Q 012296          275 I------TATVIDPADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN--  340 (466)
Q Consensus       275 i------~v~~vd~~Dle~Le~ai~~~--~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~~--  340 (466)
                      +      .+..++..|+++|++++++.  ++++|+++.++|++|.+.+    +++|.++|++||++||+||+|.....  
T Consensus       170 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~  249 (427)
T 3fq8_A          170 VPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAY  249 (427)
T ss_dssp             SCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBT
T ss_pred             CCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCc
Confidence            1      24445566899999998752  4899999998889999998    99999999999999999999874311  


Q ss_pred             ---ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH-HhCC--CchHHHHHHHHHhhHHH--HHHHHH
Q 012296          341 ---QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGG--ALNPNAAYLIIRGMKTL--HLRVQQ  412 (466)
Q Consensus       341 ---~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~-~~G~--~lsp~~a~l~l~~L~tl--~~R~~~  412 (466)
                         ........|++  |++|.+++ | .++|++++++++++.+..... ..+.  ..++..+..++..++.+  +..+++
T Consensus       250 ~~~~~~~~~~~di~--t~sK~~~~-G-~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~  325 (427)
T 3fq8_A          250 GGVQEKFGVTPDLT--TLGKIIGG-G-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEY  325 (427)
T ss_dssp             THHHHHTTCCCSEE--EECGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHH
T ss_pred             chhhHhcCCCCChh--hhhhhhhC-C-cceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHH
Confidence               11122335654  67799995 4 467899999999887754211 1222  23666666655555543  234555


Q ss_pred             HHHHHHHHHHHHHc
Q 012296          413 QNSTALRMAKILEA  426 (466)
Q Consensus       413 ~~~na~~La~~L~~  426 (466)
                      ..++.+.+.+.|++
T Consensus       326 ~~~~~~~~~~~l~~  339 (427)
T 3fq8_A          326 LDQITKRLSDGLLA  339 (427)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666666666654

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.72  E-value=1.2e-16  Score=166.36  Aligned_cols=213  Identities=18%  Similarity=0.171  Sum_probs=139.2

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccC-----C----CEEEEcCCCCcchHHHHHhhcccCCceEE
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPA-----G----GHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~-----G----d~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~  278 (466)
                      ..+...+|+++++++++.++++++++|++|+.+++.+++.+     |    |+|++. ..|..++.....   ..|..+.
T Consensus        72 ~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~---~~~~~~~  147 (467)
T 2oqx_A           72 GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS-NYFFDTTQGHSQ---INGCTVR  147 (467)
T ss_dssp             SCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEE-SSCCHHHHHHHH---HTTCEEE
T ss_pred             cCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEec-ccccccchhhhh---ccCccee
Confidence            35778899999999999988999999999999999998888     9    998876 445443222211   1122211


Q ss_pred             E------eC---------CCCHHHHHHhhcC---CCceEEEEeCCCCCC-ccccc---HHHHHHHHHhcCCEEEEeCCCC
Q 012296          279 V------ID---------PADMEGLEAALNN---NNVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFA  336 (466)
Q Consensus       279 ~------vd---------~~Dle~Le~ai~~---~~tklV~lesP~NPt-G~v~d---l~~Ia~la~~~gillIvDea~a  336 (466)
                      .      ++         ..|+++|++++++   .++++|++++|+||+ |.+.+   +++|+++|++||++||+|++++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~  227 (467)
T 2oqx_A          148 NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARF  227 (467)
T ss_dssp             ECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTH
T ss_pred             eccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhh
Confidence            1      11         1379999999973   248999999999998 77754   7899999999999999996643


Q ss_pred             C--------------CCcccccc----cCCcEEEECCccccCccccceeEEEEeCHH-HHHHHHHHHHH---hC-----C
Q 012296          337 T--------------PLNQKALS----LGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHV---LG-----G  389 (466)
Q Consensus       337 ~--------------~~~~~~l~----~gaDivv~S~sK~lgg~gdv~gG~ivg~~e-li~~l~~~~~~---~G-----~  389 (466)
                      .              +.....+.    ..+|+++.|++|+++++   .||+++++++ +++.+..++..   .+     +
T Consensus       228 ~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (467)
T 2oqx_A          228 AENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP---MGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYG  304 (467)
T ss_dssp             HHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS---SCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCC
T ss_pred             hhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCC---CceEEEecChhHHHHHHHHHHhhhccCCccccc
Confidence            2              11111111    24788899999999866   3688888766 54443332221   11     1


Q ss_pred             CchHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHcC
Q 012296          390 ALNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       390 ~lsp~~a~l~l~~L~tl--~~R~~~~~~na~~La~~L~~~  427 (466)
                      .........+..+++..  ..++++..++++.+.+.|+++
T Consensus       305 ~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  344 (467)
T 2oqx_A          305 GLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI  344 (467)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC
Confidence            12221111112222322  235666678889999999886

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.72  E-value=8.8e-17  Score=172.86  Aligned_cols=150  Identities=16%  Similarity=0.272  Sum_probs=114.4

Q ss_pred             cEEEeCCHH-HHHHHHHHH-----HccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-------CCHHHHHHhhc
Q 012296          227 STVIMASGM-SASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALN  293 (466)
Q Consensus       227 ~~l~~sSGs-~Ai~~al~a-----ll~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-------~Dle~Le~ai~  293 (466)
                      +.+++++|+ +++..++.+     ++++||+|++++|.|.+.....  .+...|+++..++.       .|+++|+++++
T Consensus       166 ~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~  243 (546)
T 2zy4_A          166 VNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIP--ELAQYALEEVAINADPSLNWQYPDSELDKLKD  243 (546)
T ss_dssp             EEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHH--HSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS
T ss_pred             ceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHH--HHcCCCcEEEEEecCcccCCCCCHHHHHHhhC
Confidence            466666666 899988887     4789999999999999865432  24445677766642       47899998886


Q ss_pred             CCCceEEEEeCCCCCCccccc---HHHHHHHH--HhcCCEEEEeCCCCCCCc--ccccc--cCCcEEEECCccccCcccc
Q 012296          294 NNNVSLFFTESPTNPFLRCVD---VKLVSDLC--HKKGAIVCIDGTFATPLN--QKALS--LGADLVLHSATKFIGGHND  364 (466)
Q Consensus       294 ~~~tklV~lesP~NPtG~v~d---l~~Ia~la--~~~gillIvDea~a~~~~--~~~l~--~gaDivv~S~sK~lgg~gd  364 (466)
                      + ++++|++++|+||||.+++   +++|.++|  +++|++||+|++|.....  .....  .+.++++.|+||++|.+|.
T Consensus       244 ~-~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~Gl  322 (546)
T 2zy4_A          244 P-AIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGW  322 (546)
T ss_dssp             T-TEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGG
T ss_pred             C-CCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCc
Confidence            6 4999999999999999987   56678888  789999999999875432  11111  2467999999999998874


Q ss_pred             ceeEEEEeCHH-HHHHH
Q 012296          365 VLAGSISGSGK-LVTQI  380 (466)
Q Consensus       365 v~gG~ivg~~e-li~~l  380 (466)
                       +.|+++++++ +++++
T Consensus       323 -RiG~~~~~~~~l~~~l  338 (546)
T 2zy4_A          323 -RLGVVAAHQQNVFDLA  338 (546)
T ss_dssp             -CEEEEEEESSCHHHHH
T ss_pred             -ceEEEEECCHHHHHHH
Confidence             5788888764 77766

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.71  E-value=1.9e-16  Score=161.93  Aligned_cols=213  Identities=11%  Similarity=0.016  Sum_probs=138.4

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEE-eCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCH
Q 012296          210 PTTVVVEEKMSALEGAE---STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM  285 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e---~~l~-~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dl  285 (466)
                      +..+++++.+++++|.+   +.++ +++|++|+.+++.+++++| .+++....|........... ..|.++++++..+-
T Consensus        78 ~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~g  155 (398)
T 2fyf_A           78 NLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVSKN-PFVGEPIIITSDPG  155 (398)
T ss_dssp             HHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHHHC-TTSCCCEEEECCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHh-CCCCceEEEecCCC
Confidence            34688999999999984   3455 5677799999999999887 23333444432111011111 12555555543210


Q ss_pred             HHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccc
Q 012296          286 EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDV  365 (466)
Q Consensus       286 e~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv  365 (466)
                      ......+++ ++++|++++|+||||.+.|+++|.++   +|+++|+|++++.+....... ++|+++.|+||++++++  
T Consensus       156 ~~~~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~~~-~~di~~~s~sK~~~~~g--  228 (398)
T 2fyf_A          156 SAPEPQTDP-SVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVDIA-ETDAYYFAPQKNFASDG--  228 (398)
T ss_dssp             CCCCCCCCT-TCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCCGG-GCSEEEECTTSTTCSCS--
T ss_pred             CCCCccccC-CCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccCcc-cCcEEEEecCcccCCCC--
Confidence            000112455 48999999999999999999998887   899999999987543221222 47999999999999986  


Q ss_pred             eeEEEEeCHHHHHHHHHHHH---------------------HhCCCchHHHHHHHHHhhHH------HHHHHHHHHHHHH
Q 012296          366 LAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTAL  418 (466)
Q Consensus       366 ~gG~ivg~~eli~~l~~~~~---------------------~~G~~lsp~~a~l~l~~L~t------l~~R~~~~~~na~  418 (466)
                      ..|+++++++++++++....                     ....+.+....+.+...++.      ++.+.++..++++
T Consensus       229 g~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~  308 (398)
T 2fyf_A          229 GLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQ  308 (398)
T ss_dssp             SEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred             ceEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            26888999998887754310                     00122333333222223322      5556777888999


Q ss_pred             HHHHHHHcCCCeE
Q 012296          419 RMAKILEAHPKVK  431 (466)
Q Consensus       419 ~La~~L~~~p~V~  431 (466)
                      .+.+.|+++|+++
T Consensus       309 ~l~~~L~~~~g~~  321 (398)
T 2fyf_A          309 RLYSWAQERPYTT  321 (398)
T ss_dssp             HHHHHHHHSTTEE
T ss_pred             HHHHHHHHcCCce
Confidence            9999999987764

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.70  E-value=4.4e-16  Score=163.01  Aligned_cols=228  Identities=13%  Similarity=0.104  Sum_probs=143.2

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhc------
Q 012296          202 FEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL------  270 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l------  270 (466)
                      +.+..+.++...+|+++|+++++.   ++++++++|++|+..++..+.  ..+++||+.++.|++........-      
T Consensus        99 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~  178 (453)
T 4ffc_A           99 TCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPY  178 (453)
T ss_dssp             CTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred             cccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCccc
Confidence            445567888999999999999863   568888899999999997654  355899999999987443221110      


Q ss_pred             ----ccCCceEEEeCCC----C-------------HHHHHHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhc
Q 012296          271 ----PKMGITATVIDPA----D-------------MEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKK  325 (466)
Q Consensus       271 ----~~~Gi~v~~vd~~----D-------------le~Le~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~  325 (466)
                          ......+..++..    |             ++.|++++.++++++|++|..++..|.+.+    +++|.++|++|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~  258 (453)
T 4ffc_A          179 KSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASEN  258 (453)
T ss_dssp             TTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc
Confidence                0111123333322    2             366777775543566666554444456655    99999999999


Q ss_pred             CCEEEEeCCCCCCCc------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHH
Q 012296          326 GAIVCIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI  399 (466)
Q Consensus       326 gillIvDea~a~~~~------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~  399 (466)
                      |++||+||+|.....      ........|++  +++|.+++ | ...|++++++++++.+...........++..+.++
T Consensus       259 ~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~--t~sK~~~~-G-~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa  334 (453)
T 4ffc_A          259 GVVFIADEVQTGFARTGAWFASEHEGIVPDIV--TMAKGIAG-G-MPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAA  334 (453)
T ss_dssp             TCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT-T-SSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHH
T ss_pred             CCEEEEecCccCCCcccccchhhhcCCCcchH--hhhhhhcC-C-cCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHH
Confidence            999999999764211      11122234655  57799987 5 45788899999888765433222233456666555


Q ss_pred             HHhhHHHH--HHHHHHHHHHHHHHHHH----HcCCCeEEE
Q 012296          400 IRGMKTLH--LRVQQQNSTALRMAKIL----EAHPKVKRV  433 (466)
Q Consensus       400 l~~L~tl~--~R~~~~~~na~~La~~L----~~~p~V~~V  433 (466)
                      +..++.+.  ..+++..++.+++.+.|    +++|.+..+
T Consensus       335 ~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  374 (453)
T 4ffc_A          335 VAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEV  374 (453)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence            55555332  22444444555544444    456655443

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.69  E-value=5.7e-16  Score=161.87  Aligned_cols=214  Identities=12%  Similarity=0.080  Sum_probs=140.4

Q ss_pred             cCCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHHc---c-C----------CCEEEEcCCCCcchHHHH-
Q 012296          205 GRYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV---P-A----------GGHIVTTTDCYRKTRIFI-  266 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g---~e~~l~~sSGs~Ai~~al~all---~-~----------Gd~Vlv~~~~y~~t~~~~-  266 (466)
                      .++.++...++++.|+++++   .++++++++|++|+..++..+.   . +          ||+||+.++.|++..... 
T Consensus        96 ~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~  175 (449)
T 2cjg_A           96 SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTL  175 (449)
T ss_dssp             TTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGG
T ss_pred             cccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchh
Confidence            35677888999999999985   3677888889999999887543   2 2          899999999998732211 


Q ss_pred             ---------HhhcccCCceEEEeCCCC--H-------------HHHHHhhc--CCCceEEEEeCCCCCCccccc----HH
Q 012296          267 ---------ETVLPKMGITATVIDPAD--M-------------EGLEAALN--NNNVSLFFTESPTNPFLRCVD----VK  316 (466)
Q Consensus       267 ---------~~~l~~~Gi~v~~vd~~D--l-------------e~Le~ai~--~~~tklV~lesP~NPtG~v~d----l~  316 (466)
                               ..........+.+++..|  .             ++|+++++  ..++++|+++.++|++|.+.+    ++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~  255 (449)
T 2cjg_A          176 SLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFA  255 (449)
T ss_dssp             GTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHH
T ss_pred             hhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHH
Confidence                     011111112455555444  2             34888885  224899999887899997666    99


Q ss_pred             HHHHHHHhcCCEEEEeCCCCCCCc------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHH--HH-HHh
Q 012296          317 LVSDLCHKKGAIVCIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LH-HVL  387 (466)
Q Consensus       317 ~Ia~la~~~gillIvDea~a~~~~------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~--~~-~~~  387 (466)
                      +|.++|++||++||+||+|.....      ........|++  +++|++  +    .|++++++++++.+..  .. ...
T Consensus       256 ~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l--~----iG~~~~~~~~~~~l~~~~~~~~~~  327 (449)
T 2cjg_A          256 AMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIV--AFGKKT--Q----VCGVMAGRRVDEVADNVFAVPSRL  327 (449)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGG--S----SEEEEECGGGGGSTTCTTTSTTSS
T ss_pred             HHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEE--EecCcc--c----EEEEEECHHHhhhhhhcccCCccc
Confidence            999999999999999999874211      12223346766  577998  3    4777788888765321  00 111


Q ss_pred             C--CCchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHc
Q 012296          388 G--GALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       388 G--~~lsp~~a~l~l~~L~tl~--~R~~~~~~na~~La~~L~~  426 (466)
                      +  ...++..+..++..++.+.  ...++..++.+.+.+.|++
T Consensus       328 ~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~  370 (449)
T 2cjg_A          328 NSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDE  370 (449)
T ss_dssp             CCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            1  2235555555555555332  2455667777788887764

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.64  E-value=2.1e-14  Score=149.60  Aligned_cols=221  Identities=16%  Similarity=0.080  Sum_probs=137.0

Q ss_pred             CCccccCCCchhHHHHHHHHHhhh-CC----C--cEEEeCCHHHHHHHHHHH----HccCCCEEEEcCCCCcchHHHHHh
Q 012296          200 ASFEYGRYGNPTTVVVEEKMSALE-GA----E--STVIMASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIET  268 (466)
Q Consensus       200 ~~~~Y~R~~np~~~~Lee~LA~l~-g~----e--~~l~~sSGs~Ai~~al~a----ll~~Gd~Vlv~~~~y~~t~~~~~~  268 (466)
                      ..+.|..  .....+|++.+++++ |.    +  ..+.+.+|+.|+..++..    ++.+||+|++++|.|+.....+  
T Consensus        79 ~~~~Y~p--~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~--  154 (420)
T 4h51_A           79 LDYEYLP--ISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVV--  154 (420)
T ss_dssp             CCCCCCC--TTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHH--
T ss_pred             CCCCCCC--cCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHH--
Confidence            3455663  344557888888764 32    1  233345667776655543    3579999999999999866444  


Q ss_pred             hcccCCce-EEE---eCC----CCHHHHHHhhc--CCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCC
Q 012296          269 VLPKMGIT-ATV---IDP----ADMEGLEAALN--NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF  335 (466)
Q Consensus       269 ~l~~~Gi~-v~~---vd~----~Dle~Le~ai~--~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~  335 (466)
                        +..|.+ +..   .+.    .|.+.+.+.+.  ..+++++++.+|+||||.+.+   +++|+++|++++++++.|++|
T Consensus       155 --~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y  232 (420)
T 4h51_A          155 --KAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAY  232 (420)
T ss_dssp             --HHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             --HHcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhh
Confidence              334543 322   221    25666666653  224789999999999999985   678999999999999999998


Q ss_pred             CCCCccc----c------ccc-CCcEEEECCccccCccccceeEEEEeCHHHHH-------HHHHHHHHhCCCchHHHHH
Q 012296          336 ATPLNQK----A------LSL-GADLVLHSATKFIGGHNDVLAGSISGSGKLVT-------QIRNLHHVLGGALNPNAAY  397 (466)
Q Consensus       336 a~~~~~~----~------l~~-gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~-------~l~~~~~~~G~~lsp~~a~  397 (466)
                      .......    .      .+. ..-+++.|+||.++.+|++ .|++++..+..+       ++.........+.+...+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R-vG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~  311 (420)
T 4h51_A          233 QGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSER-AGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGAR  311 (420)
T ss_dssp             TTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGC-EEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred             hhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCc-eEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHH
Confidence            7543211    1      111 2348899999999999976 566665432222       2222222233333444443


Q ss_pred             HHHHhh----------HHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          398 LIIRGM----------KTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       398 l~l~~L----------~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      ++...+          +.+....+++.+.++.+.+.|++.
T Consensus       312 ~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~  351 (420)
T 4h51_A          312 LAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRL  351 (420)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333222          223334455677788888888875

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.43  E-value=2.5e-17  Score=173.86  Aligned_cols=217  Identities=14%  Similarity=0.121  Sum_probs=147.0

Q ss_pred             CCCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhcccCCc--eEEEe
Q 012296          206 RYGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGI--TATVI  280 (466)
Q Consensus       206 R~~np~~~~Lee~LA~l~-g~e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi--~v~~v  280 (466)
                      .+.++...+|+++|++++ +.+.+++++||++|+..++....  ..+++||+.+..|++.......-....|+  .+..+
T Consensus       136 ~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~  215 (465)
T 2yky_A          136 STQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLG  215 (465)
Confidence            356788899999999999 66788889999999999987642  45689999999998743211100012233  33444


Q ss_pred             CCCCHHHHHHhhcC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCCcccc-----cccCCc
Q 012296          281 DPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLNQKA-----LSLGAD  349 (466)
Q Consensus       281 d~~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~~~~~-----l~~gaD  349 (466)
                      +..|+++|++++++  .++++|++|.+.|++|.+.+    +++|.++|+++|++||+||++. .-....     .....|
T Consensus       216 ~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pD  294 (465)
T 2yky_A          216 VYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISAD  294 (465)
Confidence            55689999999973  24899999887777998776    9999999999999999999988 311111     111245


Q ss_pred             EEEECCccccCccccceeEEEEeCHHHHHHHHHH--H---HHhCCCchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHH
Q 012296          350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL--H---HVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAK  422 (466)
Q Consensus       350 ivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~--~---~~~G~~lsp~~a~l~l~~L~tl~--~R~~~~~~na~~La~  422 (466)
                      ++  +++|++++ | ...|++++++++++.+...  .   .......+|..+.+++..|+.+.  ...++..++.+++.+
T Consensus       295 i~--t~sK~lg~-G-~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~~  370 (465)
T 2yky_A          295 LT--TLGKYIGG-G-MSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRA  370 (465)
Confidence            44  78999998 4 4578999999999887651  1   11112234555555544454432  234445555666666


Q ss_pred             HHHcC
Q 012296          423 ILEAH  427 (466)
Q Consensus       423 ~L~~~  427 (466)
                      .|++.
T Consensus       371 ~L~~~  375 (465)
T 2yky_A          371 NLNRI  375 (465)
Confidence            66543

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.60  E-value=1.7e-14  Score=150.42  Aligned_cols=205  Identities=10%  Similarity=0.104  Sum_probs=137.9

Q ss_pred             HHHHHhhhCCC---cEEEeCCHHHHHHHHHHHHccC----CCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC------
Q 012296          216 EEKMSALEGAE---STVIMASGMSASTVMLLALVPA----GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------  282 (466)
Q Consensus       216 ee~LA~l~g~e---~~l~~sSGs~Ai~~al~all~~----Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~------  282 (466)
                      .++|..+ |..   ..++++.++.++.+++.+.+++    ||.||+++.+|.+.+..+    ...|++++++++      
T Consensus       123 ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAl----iL~Gl~Pv~V~p~~d~~~  197 (501)
T 3hl2_A          123 LDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSM----ITAGFEPVVIENVLEGDE  197 (501)
T ss_dssp             HHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHH----HHTTCEEEEECEEEETTE
T ss_pred             HHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHH----HHcCCeEEEEeeeecccc
Confidence            3344444 653   2444444455666666666664    499999999999877443    345777777754      


Q ss_pred             --CCHHHHHHhhcCCC---ceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc------ccccccC-CcE
Q 012296          283 --ADMEGLEAALNNNN---VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN------QKALSLG-ADL  350 (466)
Q Consensus       283 --~Dle~Le~ai~~~~---tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~------~~~l~~g-aDi  350 (466)
                        .|+++++++|+++.   +.+|+.++++|..+.+.||++|+++||+||++++||++|+..+.      ...+.+| +|+
T Consensus       198 ~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~  277 (501)
T 3hl2_A          198 LRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDA  277 (501)
T ss_dssp             EEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcE
Confidence              27899999997531   33444444445445778999999999999999999999987652      1234567 999


Q ss_pred             EEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          351 VLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       351 vv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~lsp~~a~l~l~--~L~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      ++.|.||++-.+-  .||++.. ++++++++.......-...+....|+.+.  |.+-+...+++..++++++.+.|++.
T Consensus       278 vVqS~HK~llvpI--GG~ii~~~d~e~l~~~~~~yPGr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~l  355 (501)
T 3hl2_A          278 FVQSLDKNFMVPV--GGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKL  355 (501)
T ss_dssp             EEEEHHHHHCCCS--SCEEEEESCHHHHHHHHHTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecccccceeec--CceEEEeCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999987762  2444433 56777776443211112223344565543  45667777888899999999999874

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.59  E-value=3.9e-14  Score=148.42  Aligned_cols=211  Identities=10%  Similarity=0.104  Sum_probs=142.4

Q ss_pred             HHHHHHHHHhhhCCC--cE-EEeCCHHHHHHHHHHHHccC----CCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC--
Q 012296          212 TVVVEEKMSALEGAE--ST-VIMASGMSASTVMLLALVPA----GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (466)
Q Consensus       212 ~~~Lee~LA~l~g~e--~~-l~~sSGs~Ai~~al~all~~----Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--  282 (466)
                      .+.+..++.+++|.+  .. ++++++|.++.+++.+.+++    ++.||+++.+|.+....    +...|+..++++.  
T Consensus       100 e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kA----l~l~Gl~p~~v~~~~  175 (450)
T 3bc8_A          100 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKS----MVTAGFEPVVIENVL  175 (450)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHH----HHHTTCEEEEECCEE
T ss_pred             HHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHH----HHHcCCeeEEEEeee
Confidence            345666666777764  33 66666664444444444444    89999999999987644    3446777777654  


Q ss_pred             ------CCHHHHHHhhcCCC--ceEEEEeCCCC-CCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc------ccccc-
Q 012296          283 ------ADMEGLEAALNNNN--VSLFFTESPTN-PFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ------KALSL-  346 (466)
Q Consensus       283 ------~Dle~Le~ai~~~~--tklV~lesP~N-PtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~------~~l~~-  346 (466)
                            .|++.|+++|++++  .+++++.+|++ .+|.+.||++|+++||+||++++||++|+.....      ..+.. 
T Consensus       176 ~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~  255 (450)
T 3bc8_A          176 EGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG  255 (450)
T ss_dssp             ETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHS
T ss_pred             cCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhccc
Confidence                  37999999996532  34555556654 4568899999999999999999999999864432      12233 


Q ss_pred             CCcEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHH
Q 012296          347 GADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKI  423 (466)
Q Consensus       347 gaDivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~lsp~~a~l~l~--~L~tl~~R~~~~~~na~~La~~  423 (466)
                      ++|+++.|+||++..+-  .++++.. ++++++++.......+...+.+..|..+.  |.+.+...+++..++++++.+.
T Consensus       256 ~AD~~v~S~HK~l~a~~--~~~~l~~rd~~~~~~~~~~~~g~~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~  333 (450)
T 3bc8_A          256 RIDAFVQSLDKNFMVPV--GGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQ  333 (450)
T ss_dssp             CCCEEEEEHHHHHSCCS--SCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCccCCCchh--ccEEEEecCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999998874  4566664 66666665432211122333345554433  4455666677778889999999


Q ss_pred             HHcCC
Q 012296          424 LEAHP  428 (466)
Q Consensus       424 L~~~p  428 (466)
                      |++.+
T Consensus       334 l~~~~  338 (450)
T 3bc8_A          334 LKKLA  338 (450)
T ss_dssp             HHHHH
T ss_pred             HHhhH
Confidence            98766

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.53  E-value=4.1e-14  Score=145.51  Aligned_cols=209  Identities=12%  Similarity=0.033  Sum_probs=143.6

Q ss_pred             hhHHHHHHHHHhhhCCC--c-EEEe-CCHHHHHHHHHHHHccC--CCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          210 PTTVVVEEKMSALEGAE--S-TVIM-ASGMSASTVMLLALVPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e--~-~l~~-sSGs~Ai~~al~all~~--Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      ...++.++.+++++|++  . ++++ ++|++++++++..++.+  ||+|++....+.+. .+. ..+++.|..+.+++. 
T Consensus        58 ~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~-~~~-~~a~~~G~~~~~~~~~  135 (377)
T 3e77_A           58 KIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSA-KAA-EEAKKFGTINIVHPKL  135 (377)
T ss_dssp             HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHH-HHH-HHHTTTSEEEECSCCC
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHH-HHH-HHHHHhCCceEEeccC
Confidence            44677899999999984  3 4443 46779999999999876  99998877766653 333 457778887776543 


Q ss_pred             ----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEECCcc
Q 012296          283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATK  357 (466)
Q Consensus       283 ----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S~sK  357 (466)
                          .++++++.+++++ +++|.+.+..|.+|.+.|+     +|+++|+++++|.+++.+. +.+..+++  +++.|.+|
T Consensus       136 ~~~~~~~~~~~~~i~~~-t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K  207 (377)
T 3e77_A          136 GSYTKIPDPSTWNLNPD-ASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQK  207 (377)
T ss_dssp             SSSCSCCCGGGCCCCTT-CSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGG
T ss_pred             CCcCCCCChHHhccCCC-ccEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEeccc
Confidence                2466777777764 9999998888889999998     4778999999999987543 34444554  68899999


Q ss_pred             ccCccccceeEEEEeCHHHHHHHH----------HHH--HHhCCCchHHHHHHHHHhhHH------HHHHHHHHHHHHHH
Q 012296          358 FIGGHNDVLAGSISGSGKLVTQIR----------NLH--HVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTALR  419 (466)
Q Consensus       358 ~lgg~gdv~gG~ivg~~eli~~l~----------~~~--~~~G~~lsp~~a~l~l~~L~t------l~~R~~~~~~na~~  419 (466)
                      ++|++|   .|+++.++++++++.          ...  ....++.+....+.+..+++.      ++.+.++..+.+++
T Consensus       208 ~~gp~G---~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~  284 (377)
T 3e77_A          208 NVGSAG---VTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQT  284 (377)
T ss_dssp             TTSCTT---CEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ccCCCc---cEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            997665   577776665532211          111  111233333333333333332      44556677788899


Q ss_pred             HHHHHHcCCCeE
Q 012296          420 MAKILEAHPKVK  431 (466)
Q Consensus       420 La~~L~~~p~V~  431 (466)
                      +.+.|++.|++.
T Consensus       285 l~~~L~~~~g~~  296 (377)
T 3e77_A          285 IYEIIDNSQGFY  296 (377)
T ss_dssp             HHHHHHTSTTSE
T ss_pred             HHHHHHhcCCce
Confidence            999999988764

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.52  E-value=1.9e-13  Score=142.09  Aligned_cols=215  Identities=17%  Similarity=0.115  Sum_probs=142.2

Q ss_pred             CchhHHHHH----HHHHhhhCCCc-----EEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHH--Hh--hcccCC
Q 012296          208 GNPTTVVVE----EKMSALEGAES-----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFI--ET--VLPKMG  274 (466)
Q Consensus       208 ~np~~~~Le----e~LA~l~g~e~-----~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~--~~--~l~~~G  274 (466)
                      +...++++|    ++..+++|++.     .+=.-||+.|+.+++.++++|||+|+..+..+++....-  ..  .....|
T Consensus        94 Gce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg  173 (490)
T 3ou5_A           94 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATS  173 (490)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC----------------------
T ss_pred             CChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCccccccc
Confidence            456666654    45567889864     466689999999999999999999999998888742211  00  001112


Q ss_pred             ceEEE----eC----CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCC-----CCCCcc
Q 012296          275 ITATV----ID----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-----ATPLNQ  341 (466)
Q Consensus       275 i~v~~----vd----~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~-----a~~~~~  341 (466)
                      .-+..    +|    ..|.|++++.....++|+|++-...+  -+..|++++.++|++.|++|++|-++     +.+...
T Consensus       174 ~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~SaY--~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~p  251 (490)
T 3ou5_A          174 IFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAY--ARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIP  251 (490)
T ss_dssp             ------CBCEETTTTEECHHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSC
T ss_pred             ccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCccC--ccccCHHHHHHHHhhcccEEEechhhhhhhhcccccC
Confidence            11111    11    13889999888776799999855443  46789999999999999999999994     346678


Q ss_pred             cccccCCcEEEECCccccCccccceeEEEEeCH---------------HHHHHHHHHHH--HhCCCchHHHHHHHH---H
Q 012296          342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSG---------------KLVTQIRNLHH--VLGGALNPNAAYLII---R  401 (466)
Q Consensus       342 ~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~---------------eli~~l~~~~~--~~G~~lsp~~a~l~l---~  401 (466)
                      +|+.+ +|+|..|+||+|.||   +||+|..++               ++.+++.....  ..|+.+.-..|..+.   .
T Consensus       252 sP~~~-ADvVTtTTHKTLrGP---rGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~E  327 (490)
T 3ou5_A          252 SPFKH-ADIVTTTTHKTLRGA---RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQ  327 (490)
T ss_dssp             CGGGT-CSEEEEESSSTTCSC---SCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH
T ss_pred             Ccccc-ceEEeccccccccCC---CceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHH
Confidence            88887 999999999999999   499998765               45566655332  334433322222222   1


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012296          402 -GMKTLHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       402 -~L~tl~~R~~~~~~na~~La~~L~~~p  428 (466)
                       ....+....++..+|++.|++.|.+..
T Consensus       328 a~~p~fk~Ya~qVv~NAkaLA~~L~~~G  355 (490)
T 3ou5_A          328 ACTPMFREYSLQVLKNARAMADALLERG  355 (490)
T ss_dssp             HHSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhHhHHHHHHHHHHHHHHHHHHHHhCC
Confidence             123456677888999999999999874

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.50  E-value=2.1e-13  Score=143.62  Aligned_cols=206  Identities=13%  Similarity=0.128  Sum_probs=126.4

Q ss_pred             hhHHHHHHHHHhhh--CCCcEEEeCCHHHHHHHHHHHHc-------c------------------CC---CEEEEcCCCC
Q 012296          210 PTTVVVEEKMSALE--GAESTVIMASGMSASTVMLLALV-------P------------------AG---GHIVTTTDCY  259 (466)
Q Consensus       210 p~~~~Lee~LA~l~--g~e~~l~~sSGs~Ai~~al~all-------~------------------~G---d~Vlv~~~~y  259 (466)
                      +..+.+++.|+++.  +.+.+++++||++|+..++..++       +                  +|   ++||+.++.|
T Consensus       110 ~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~y  189 (472)
T 1ohv_A          110 NFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAF  189 (472)
T ss_dssp             THHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCC
T ss_pred             HHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCc
Confidence            34445555555555  44788899999999999998763       1                  45   8999999999


Q ss_pred             cchHHHHHhhcc-----cCCce-----EEEeC----C-------------CCHHHHHHhhcCC-----CceEEEEeCCCC
Q 012296          260 RKTRIFIETVLP-----KMGIT-----ATVID----P-------------ADMEGLEAALNNN-----NVSLFFTESPTN  307 (466)
Q Consensus       260 ~~t~~~~~~~l~-----~~Gi~-----v~~vd----~-------------~Dle~Le~ai~~~-----~tklV~lesP~N  307 (466)
                      ++..........     ..+..     ...++    .             .|+++|+++|++.     ++++|++|..+|
T Consensus       190 Hg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~  269 (472)
T 1ohv_A          190 HGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQS  269 (472)
T ss_dssp             CCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBC
T ss_pred             ccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcC
Confidence            884322211110     11111     11111    0             1578899888751     489999998888


Q ss_pred             CCccccc----HHHHHHHHHhcCCEEEEeCCCCCC-C---cccccccC----CcEEEECCccc-cCccccceeEEEEeCH
Q 012296          308 PFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-L---NQKALSLG----ADLVLHSATKF-IGGHNDVLAGSISGSG  374 (466)
Q Consensus       308 PtG~v~d----l~~Ia~la~~~gillIvDea~a~~-~---~~~~l~~g----aDivv~S~sK~-lgg~gdv~gG~ivg~~  374 (466)
                      ++|.+.+    +++|.++|++||++||+||++... .   ......+|    .|++  |++|. ++      ||+++ ++
T Consensus       270 ~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~--t~sK~~l~------GG~~~-~~  340 (472)
T 1ohv_A          270 EGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMMT------GGFFH-KE  340 (472)
T ss_dssp             TTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEE--EECGGGSS------EEEEE-CG
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEE--EEcccccc------CCccC-ch
Confidence            9998877    999999999999999999998631 1   11111234    6765  57798 44      36666 65


Q ss_pred             HHHHHHHHHHHHhCC-CchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHc
Q 012296          375 KLVTQIRNLHHVLGG-ALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       375 eli~~l~~~~~~~G~-~lsp~~a~l~l~~L~tl~--~R~~~~~~na~~La~~L~~  426 (466)
                      ++. .+... ...+. ..++..+..++..++.+.  ...++..++.+.+.+.|++
T Consensus       341 ~~~-~~~~~-~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~  393 (472)
T 1ohv_A          341 EFR-PNAPY-RIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLD  393 (472)
T ss_dssp             GGS-CSSSS-SSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             hhc-ccccc-cccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            542 11111 11121 235665555555555432  2345556666677776664

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.48  E-value=4.1e-13  Score=141.18  Aligned_cols=215  Identities=15%  Similarity=0.132  Sum_probs=145.5

Q ss_pred             CchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhh--cccCCceEEEeCC
Q 012296          208 GNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV--LPKMGITATVIDP  282 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~-e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~--l~~~Gi~v~~vd~  282 (466)
                      .++...+|++.|++++.. +.+.+++||++|+..++....  ...++||....+|++........  .......+..++.
T Consensus       125 ~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~  204 (454)
T 4ao9_A          125 HNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY  204 (454)
T ss_dssp             EESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT
T ss_pred             CcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC
Confidence            356677899999998854 778888999999999887553  34478998898988732110000  0112234556677


Q ss_pred             CCHHHHHHhhcCC--CceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCC----CCcccccccCCcEEE
Q 012296          283 ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT----PLNQKALSLGADLVL  352 (466)
Q Consensus       283 ~Dle~Le~ai~~~--~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~----~~~~~~l~~gaDivv  352 (466)
                      .|++.+++.++++  ++.+|++|...+..|.+.+    +++|.++|++||++||+||++..    ...+.....-.|+++
T Consensus       205 nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tGR~G~~~a~e~~gv~PDi~t  284 (454)
T 4ao9_A          205 NDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTSRLAPHGLANKLGIRSDLTT  284 (454)
T ss_dssp             TCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGGGGSTTCHHHHHTCCCSEEE
T ss_pred             chHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcCCCccccchhccCCCCcEEE
Confidence            8999999988642  4889999998887888876    89999999999999999999753    111222333468876


Q ss_pred             ECCccccCccccceeEEEEeCHHHHHHHHHHH--HHhCCC--chHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHc
Q 012296          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGA--LNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~--~~~G~~--lsp~~a~l~l~~L~tl--~~R~~~~~~na~~La~~L~~  426 (466)
                        +.|.++++.  ..|++.+++++++.+....  ...+++  -+|..+..++..|+.+  +..+++..++.++|.+.|++
T Consensus       285 --~gK~lggG~--Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~  360 (454)
T 4ao9_A          285 --LGKYIGGGM--SFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNA  360 (454)
T ss_dssp             --EEGGGGTTS--SCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --eccccCCCC--cceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHH
Confidence              789998753  5788899999988664211  112222  3566666665555544  23345555666666666654

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.44  E-value=1.5e-12  Score=133.15  Aligned_cols=203  Identities=10%  Similarity=0.025  Sum_probs=133.1

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEE-eCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC---
Q 012296          210 PTTVVVEEKMSALEGAE---STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e---~~l~-~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---  282 (466)
                      ...++.++.+++++|++   ++++ +++|++++++++..++ +||+++.....+.+. .+. ..+++.|+++++++.   
T Consensus        50 ~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~-~~~-~~a~~~G~~v~~~~~~~~  126 (361)
T 3m5u_A           50 EVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVWTK-KAI-KEAQILGVNVKTVASSEE  126 (361)
T ss_dssp             HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHHHH-HHH-HHHHHTTCCEEEEEECTT
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHHH-HHH-HHHHHcCCceEEEecccC
Confidence            45677899999999983   3444 3556699999999998 888653222223232 222 335567888777642   


Q ss_pred             ----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECCcc
Q 012296          283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK  357 (466)
Q Consensus       283 ----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~sK  357 (466)
                          .+++.  + |+++ |++|.+.+..|.+|.+.|.     +++ +|+++++|.+++.+.. .+..  ..|+++.|.+|
T Consensus       127 g~~~~~~~~--~-l~~~-t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~~--~~d~~~~s~~K  194 (361)
T 3m5u_A          127 SNFDHIPRV--E-FSDN-ADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVDFS--NIALFYGGVQK  194 (361)
T ss_dssp             TTSCSCCCC--C-CCTT-SSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCCCT--TEEEEEEETTT
T ss_pred             cCCCcCChh--h-cCCC-CCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCCcc--cCCEEEEechh
Confidence                23455  3 7774 9999998888888998762     333 4999999999775432 2222  36899999999


Q ss_pred             ccCccccceeEEEEeCHHHHHHHHH--------HHH-----HhCCCchHHHHHHHHHhhHH------HHHHHHHHHHHHH
Q 012296          358 FIGGHNDVLAGSISGSGKLVTQIRN--------LHH-----VLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTAL  418 (466)
Q Consensus       358 ~lgg~gdv~gG~ivg~~eli~~l~~--------~~~-----~~G~~lsp~~a~l~l~~L~t------l~~R~~~~~~na~  418 (466)
                      ++|++|   .|+++.++++.+++..        +..     ...++.+....+.+..+++.      ++.+.++..+.++
T Consensus       195 ~~gp~G---~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~  271 (361)
T 3m5u_A          195 NAGISG---LSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKAT  271 (361)
T ss_dssp             TSSCTT---CEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             ccCCCc---cEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            997665   5888888888776643        010     01123333333333333333      4445566778888


Q ss_pred             HHHHHHHcCCCe
Q 012296          419 RMAKILEAHPKV  430 (466)
Q Consensus       419 ~La~~L~~~p~V  430 (466)
                      ++.+.|++.+++
T Consensus       272 ~l~~~L~~~~g~  283 (361)
T 3m5u_A          272 MLYECIDLSNGF  283 (361)
T ss_dssp             HHHHHHHTSTTS
T ss_pred             HHHHHHHHCCCe
Confidence            999999998866

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.42  E-value=4.6e-13  Score=138.08  Aligned_cols=205  Identities=13%  Similarity=0.013  Sum_probs=134.8

Q ss_pred             chhHHHHHHHHHhhhCCC--c-EEEe-CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC-
Q 012296          209 NPTTVVVEEKMSALEGAE--S-TVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-  283 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e--~-~l~~-sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-  283 (466)
                      ....++.++.+++++|++  . ++++ ++|++++++++..++++||++++....+.+. .+. ..+++.| ++++++.+ 
T Consensus        71 ~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~-~~~-~~a~~~G-~v~~v~~~~  147 (386)
T 3qm2_A           71 IQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAA-SAI-KEAKKYC-APQIIDAKI  147 (386)
T ss_dssp             --CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHH-HHH-HHHTTTS-EEEEEECEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHH-HHH-HHHHHhC-CeEEEecCc
Confidence            456788999999999984  2 4553 5888999999999999999987655555543 222 3456678 77766432 


Q ss_pred             -------CHHHHHHhhcCCCceEEEEeCCCCCCccc-ccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEEC
Q 012296          284 -------DMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHS  354 (466)
Q Consensus       284 -------Dle~Le~ai~~~~tklV~lesP~NPtG~v-~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S  354 (466)
                             ++++++.+++++ |++|.+.+..|.+|.+ .|+++|.     +|+++++|.+++.+. +.+..++  |+++.|
T Consensus       148 ~~~G~~~~~~~~~~~l~~~-t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~--~~~~~s  219 (386)
T 3qm2_A          148 TVDGKRAVKPMREWQLSDN-AAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRY--GVIYAG  219 (386)
T ss_dssp             EETTEEEECCGGGCCCCTT-CSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGC--SEEEEE
T ss_pred             ccCCCCCCchHHHhhcCCC-CcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCcccc--CEEEEe
Confidence                   457777888875 9999998877888996 8898885     799999999987543 3444455  467899


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHH----------HHH---HHhCCCchHHHHHHHHHhhHH------HHHHHHHHHH
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIR----------NLH---HVLGGALNPNAAYLIIRGMKT------LHLRVQQQNS  415 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~----------~~~---~~~G~~lsp~~a~l~l~~L~t------l~~R~~~~~~  415 (466)
                      .+|++|++|   .|+++.++++++++.          ...   ...| +.+....+.+..+++.      ++.+.++..+
T Consensus       220 ~hK~lGP~G---~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~g-Tp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~  295 (386)
T 3qm2_A          220 AQKNIGPAG---LTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFN-TPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQ  295 (386)
T ss_dssp             TTTTTCCTT---EEEEEEEGGGCSCCCTTSCGGGCHHHHHHC--------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             cccccCCCc---cEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCC-CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            999997655   577777766532211          000   0111 2111112222222222      3445566677


Q ss_pred             HHHHHHHHHHcCC
Q 012296          416 TALRMAKILEAHP  428 (466)
Q Consensus       416 na~~La~~L~~~p  428 (466)
                      .++++.+.|++.+
T Consensus       296 l~~~l~~~l~~~~  308 (386)
T 3qm2_A          296 KAELLYGVIDNSD  308 (386)
T ss_dssp             HHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHCC
Confidence            8888888888763

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.38  E-value=5.4e-11  Score=125.16  Aligned_cols=196  Identities=16%  Similarity=0.131  Sum_probs=124.8

Q ss_pred             CchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHH--ccCCCEEEEcCCCCcchHH-HHHhhcc---------c
Q 012296          208 GNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRI-FIETVLP---------K  272 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~al--l~~Gd~Vlv~~~~y~~t~~-~~~~~l~---------~  272 (466)
                      .++...+|.++|.++...   +.+++++||++|+..++...  ....++|+.....|++... .+...-.         .
T Consensus       105 ~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p  184 (456)
T 4atq_A          105 PYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGP  184 (456)
T ss_dssp             CCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCS
T ss_pred             CcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCC
Confidence            456667788999998753   46778899999999998743  2345789998888888322 2211100         0


Q ss_pred             CCceEEEeCC-----------CCHH-------HHHHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEE
Q 012296          273 MGITATVIDP-----------ADME-------GLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVC  330 (466)
Q Consensus       273 ~Gi~v~~vd~-----------~Dle-------~Le~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillI  330 (466)
                      ....+..++.           .+.+       .+++.+..+++.+|++|......|.+.+    +++|.++|++||++||
T Consensus       185 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI  264 (456)
T 4atq_A          185 FAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFI  264 (456)
T ss_dssp             CCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEE
T ss_pred             ccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceE
Confidence            1112333321           1222       2333333345899999998877777654    8999999999999999


Q ss_pred             EeCCCCCC------CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH
Q 012296          331 IDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK  404 (466)
Q Consensus       331 vDea~a~~------~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~  404 (466)
                      +||++.+.      +.......-.||++  +.|.++|..  ..|.+++++++++.+.......-..-+|..+.+++..|+
T Consensus       265 ~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lggg~--P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~  340 (456)
T 4atq_A          265 ADEVQSGFCRTGEWFAVDHEGVVPDIIT--MAKGIAGGL--PLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAID  340 (456)
T ss_dssp             EECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGTTS--SCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHH
T ss_pred             ecccccccCCccccccccccCCCCchhh--hhhcccCcC--CceeeEecHHHHhcccccCCCCCCCCChHHHHhhHHHHH
Confidence            99996531      12233334579987  569987653  568888889888765432211111235777776666666


Q ss_pred             HHH
Q 012296          405 TLH  407 (466)
Q Consensus       405 tl~  407 (466)
                      .++
T Consensus       341 ~i~  343 (456)
T 4atq_A          341 TME  343 (456)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            553

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.35  E-value=2.1e-10  Score=121.22  Aligned_cols=234  Identities=15%  Similarity=0.156  Sum_probs=147.2

Q ss_pred             CchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc----c---C-CCEEEEcCCCCcch-HHHHHhh----ccc
Q 012296          208 GNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV----P---A-GGHIVTTTDCYRKT-RIFIETV----LPK  272 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all----~---~-Gd~Vlv~~~~y~~t-~~~~~~~----l~~  272 (466)
                      .++...+|.++|.++...  +.+.+.+||++|+..++....    .   + ..+||.....|++. ...+...    -..
T Consensus       109 ~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~  188 (473)
T 4e3q_A          109 MSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSV  188 (473)
T ss_dssp             EEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGG
T ss_pred             cCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccc
Confidence            356677788999998754  678888999999999987532    1   2 24788888888873 2222110    001


Q ss_pred             CC---ceEEEeCCC----------C--------HHHHHHhhc---CCCceEEEEeCCCCCCccccc----HHHHHHHHHh
Q 012296          273 MG---ITATVIDPA----------D--------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHK  324 (466)
Q Consensus       273 ~G---i~v~~vd~~----------D--------le~Le~ai~---~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~  324 (466)
                      .+   .....++..          .        .+++++.+.   .+++.+|++|......|.+.+    +++|.++|++
T Consensus       189 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~  268 (473)
T 4e3q_A          189 FGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRK  268 (473)
T ss_dssp             GTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH
T ss_pred             cCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcc
Confidence            11   112222211          1        234444443   224789999988877777654    8999999999


Q ss_pred             cCCEEEEeCCCCCC------CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHH-----hCC--Cc
Q 012296          325 KGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV-----LGG--AL  391 (466)
Q Consensus       325 ~gillIvDea~a~~------~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~-----~G~--~l  391 (466)
                      ||++||.||++.+.      +.......-.|+++  +.|.++++. ...|++++++++++.+......     .|.  .-
T Consensus       269 ~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t--~~K~l~gG~-~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~G  345 (473)
T 4e3q_A          269 YDIPVISDEVICGFGRTGNTWGCVTYDFTPDAII--SSKNLTAGF-FPMGAVILGPELSKRLETAIEAIEEFPHGFTASG  345 (473)
T ss_dssp             TTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEE--ECGGGGTTS-SCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTT
T ss_pred             cceEEeccCccccCCcccchhHHHhcCCCCChHH--hcccccCCC-CCcccccccHHHHHHhccccccccccccCCCCCC
Confidence            99999999996532      11222334478887  679998753 3578888999999887653221     122  23


Q ss_pred             hHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH---cCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEe
Q 012296          392 NPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILE---AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV  462 (466)
Q Consensus       392 sp~~a~l~l~~L~tl~~--R~~~~~~na~~La~~L~---~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel  462 (466)
                      +|..+.+++..|+.+..  .+++..+..++|.+.|+   ++|.|..|                  +|.|.|++||+
T Consensus       346 npla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~v------------------RG~Gl~~giel  403 (473)
T 4e3q_A          346 HPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEY------------------RGIGFMWALEA  403 (473)
T ss_dssp             CHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSTTEEEE------------------EEETTEEEEEE
T ss_pred             CcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcCCCeeEE------------------eecceEEEEEE
Confidence            57777777666665542  23344444455555554   45666554                  56777887776

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.15  E-value=1.6e-10  Score=129.94  Aligned_cols=225  Identities=13%  Similarity=0.112  Sum_probs=139.0

Q ss_pred             CCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHHc-----cCC------------CEEEEcCCCCcc-hHHH
Q 012296          207 YGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV-----PAG------------GHIVTTTDCYRK-TRIF  265 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g---~e~~l~~sSGs~Ai~~al~all-----~~G------------d~Vlv~~~~y~~-t~~~  265 (466)
                      +.++...+|.++|+++.+   .+.+++++||++|+..++...+     ..|            .+||..+..|++ +...
T Consensus       421 ~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~ga  500 (831)
T 4a0g_A          421 NVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGA  500 (831)
T ss_dssp             EECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHH
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceee
Confidence            346777899999999987   3678889999999998887542     122            368888888877 3333


Q ss_pred             HHhhc----cc------C-CceE---------------EEeC------------CCC------------------HHHHH
Q 012296          266 IETVL----PK------M-GITA---------------TVID------------PAD------------------MEGLE  289 (466)
Q Consensus       266 ~~~~l----~~------~-Gi~v---------------~~vd------------~~D------------------le~Le  289 (466)
                      +...-    ..      . +...               ...+            ..+                  .+.|+
T Consensus       501 ls~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le  580 (831)
T 4a0g_A          501 MEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLS  580 (831)
T ss_dssp             HHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHH
T ss_pred             eeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHH
Confidence            32110    00      0 1000               0011            011                  25677


Q ss_pred             Hhhc-------CCCceEEEEeCC-CCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC----Cc--ccccccCCcEE
Q 012296          290 AALN-------NNNVSLFFTESP-TNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP----LN--QKALSLGADLV  351 (466)
Q Consensus       290 ~ai~-------~~~tklV~lesP-~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~----~~--~~~l~~gaDiv  351 (466)
                      +.|+       ..++++|++|.. .+..|.+.+    +++|.++|++||++||+||++...    -.  ........|++
T Consensus       581 ~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDii  660 (831)
T 4a0g_A          581 KHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIA  660 (831)
T ss_dssp             HHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEE
T ss_pred             HHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEE
Confidence            7775       234889999986 777787764    899999999999999999986531    11  11222346877


Q ss_pred             EECCccccCccccceeEEEEeCHHHHHHHHHHHH----HhC--CCchHHHHHHHHHhhHHHHH--HHHHHHHH-------
Q 012296          352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH----VLG--GALNPNAAYLIIRGMKTLHL--RVQQQNST-------  416 (466)
Q Consensus       352 v~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~----~~G--~~lsp~~a~l~l~~L~tl~~--R~~~~~~n-------  416 (466)
                      +  ++|.+++ |.+..|++++++++++.+.....    ..|  ...+|..+..++..|+.++.  ..++..++       
T Consensus       661 t--lsK~L~g-G~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~  737 (831)
T 4a0g_A          661 C--FAKLLTG-GMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLREL  737 (831)
T ss_dssp             E--ECGGGGT-TSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCC
T ss_pred             E--Eeccccc-CccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            5  8899987 32457899999999887653211    122  23467777777766665532  11111111       


Q ss_pred             -HHHHHHHHHcCCCeEEEe
Q 012296          417 -ALRMAKILEAHPKVKRVH  434 (466)
Q Consensus       417 -a~~La~~L~~~p~V~~V~  434 (466)
                       .+.+.+.|+++|.|..|+
T Consensus       738 l~~~l~~~l~~~~~v~~vr  756 (831)
T 4a0g_A          738 WDEELVQQISSHSAVQRVV  756 (831)
T ss_dssp             SCHHHHHHHHHSTTEEEEE
T ss_pred             HHHHHHHHHhhCCCceeEe
Confidence             123556677788877663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	466
d1qgna_	398	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {C	9e-82
d1y4ia1	397	c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Ci	7e-76
d1gc0a_	392	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom	1e-68
d2ctza1	421	c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydry	2e-62
d1e5ea_	394	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	4e-57
d1ibja_	380	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale	2e-53
d1cs1a_	384	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {E	2e-50
d1n8pa_	393	c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Ba	1e-48
d1pffa_	331	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	2e-46
d1cl1a_	391	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Esche	3e-41
d2aeua1	366	c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar	3e-23
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	1e-10
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	2e-07
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	2e-06
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	3e-06
d2e7ja1	364	c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (	3e-06
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	2e-04
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	0.002

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 398

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  256 bits (654), Expect = 9e-82
 Identities = 277/316 (87%), Positives = 301/316 (95%)

Query: 147 ASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGR 206
           ASFL+SDGS+AIHAGERLGRGIVTDAITTPVVNTSAYFF KT+ELIDFKEKRRASFEYGR
Sbjct: 4   ASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGR 63

Query: 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFI 266
           YGNPTTVV+EEK+SALEGAEST++MASGM ASTVMLLALVPAGGHIVTTTDCYRKTRIFI
Sbjct: 64  YGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFI 123

Query: 267 ETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG 326
           ET+LPKMGITATVIDPAD+  LE ALN   V+LFFTESPTNPFLRCVD++LVS LCH+KG
Sbjct: 124 ETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKG 183

Query: 327 AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV 386
           A+VCIDGTFATPLNQKAL+LGADLVLHSATKF+GGHNDVLAG ISG  KLV++IRNLHH+
Sbjct: 184 ALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHI 243

Query: 387 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHI 446
           LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA+ILEAHPKV+ V+YPGL+SHPEHHI
Sbjct: 244 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHI 303

Query: 447 ATQQMTGFGGVVSFEV 462
           A +QMTGFGG VSFEV
Sbjct: 304 AKKQMTGFGGAVSFEV 319

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

 Score =  241 bits (615), Expect = 7e-76
 Identities = 117/309 (37%), Positives = 184/309 (59%), Gaps = 5/309 (1%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
             +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +
Sbjct: 11  QIVHAGQQ--PDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDAL 68

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           E+K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI
Sbjct: 69  EKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGI 128

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
               +D    E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF
Sbjct: 129 NVRFVDAGKPEEIRAAMRPE-TKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTF 187

Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNP 393
            +P  Q+ L LGAD+V+HS TK+I GH DV+ G I G  + + Q R   L  + GG ++P
Sbjct: 188 MSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSP 247

Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 453
             A+L +RG+KTL +R+++    AL++A+ LE HP + RV+YPGL SHP++ +  +QM+ 
Sbjct: 248 FNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSL 307

Query: 454 FGGVVSFEV 462
            GG++SFE+
Sbjct: 308 PGGIISFEI 316

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

 Score =  221 bits (565), Expect = 1e-68
 Identities = 112/309 (36%), Positives = 174/309 (56%), Gaps = 5/309 (1%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
            AIH G          A+  PV  T+ + F             +A   Y R  NPT  ++
Sbjct: 7   RAIHHGYD--PQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLL 64

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           E +M++LEG E+ + +ASGM A T  L  L+  G  ++     Y  T  F+   + + G+
Sbjct: 65  EARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGV 124

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
               +D AD++ LEAA+      + + ESP NP +   D+  V+ +  K GA V +D T+
Sbjct: 125 KLRHVDMADLQALEAAM-TPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTY 183

Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI--RNLHHVLGGALNP 393
            TP  Q+ L LGADLV+HSATK++ GH D+ AG + GS  LV +I  + L  + G  L+P
Sbjct: 184 CTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSP 243

Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 453
           + A L++RG+KTL+LR+ +  + A  +A+ L   P+V+ +HYPGL S P++ +A QQM+ 
Sbjct: 244 HDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQ 303

Query: 454 FGGVVSFEV 462
            GG+++FE+
Sbjct: 304 PGGMIAFEL 312

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} Length = 421

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

 Score =  206 bits (525), Expect = 2e-62
 Identities = 100/342 (29%), Positives = 159/342 (46%), Gaps = 36/342 (10%)

Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           +L +HAG        T +   P+  T++Y FK      +    +     Y R  NPT  V
Sbjct: 5   TLQLHAGYE--PEPTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDV 62

Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +E++++ALEG ++ +  ASG +A  + L  L  AG +IV+T + Y  T    +  L ++G
Sbjct: 63  LEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLG 122

Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
           I        +      AL +     ++ ES  NP L   D++ ++    +KG  + +D T
Sbjct: 123 IEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNT 182

Query: 335 FAT-PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------LVTQIRNLH 384
           F       + L+ GA LV HS TK++GGH  V+AG+I   G          L+T+ +  +
Sbjct: 183 FGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGY 242

Query: 385 HVL-----------------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 421
           H L                       G AL P  A++++ GM+TL LR ++     L +A
Sbjct: 243 HGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLA 302

Query: 422 KILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF-GGVVSFEV 462
             L   P+V  V+YPGL  HP H  A +   G  G V++F +
Sbjct: 303 HWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGL 344

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

 Score =  192 bits (487), Expect = 4e-57
 Identities = 95/312 (30%), Positives = 164/312 (52%), Gaps = 5/312 (1%)

Query: 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPT 211
           +  +  IHA  +  +     A   P+  TS + F    +  +    + + + Y R GNPT
Sbjct: 4   TPATACIHANPQKDQ---FGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPT 60

Query: 212 TVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP 271
              +E K++ LE  E+ V  +SGM A    +L ++ AG H+++    Y  T    E  L 
Sbjct: 61  VSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALT 120

Query: 272 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 331
           K GI    I+ A    ++  +  N   ++F              ++  D   ++G +V  
Sbjct: 121 KFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIA 180

Query: 332 DGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGG 389
           D TF +P+    +  G D+V+HSATK+I GH DV+AG I G   L+ QIR   +  + G 
Sbjct: 181 DNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGS 240

Query: 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQ 449
            ++P+ A+LI RG+ TL++R++ ++  A+++A+ L++HP V++V+YPG + H  H IA +
Sbjct: 241 VISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKK 300

Query: 450 QMTGFGGVVSFE 461
           QM  +G +++F 
Sbjct: 301 QMRMYGSMITFI 312

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 380

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  181 bits (460), Expect = 2e-53
 Identities = 98/316 (31%), Positives = 165/316 (52%), Gaps = 14/316 (4%)

Query: 151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNP 210
           +S  +L ++   +       DA++TP+  T+ +      E           ++Y R GNP
Sbjct: 1   ASVSTLLVNLDNKFDP---FDAMSTPLYQTATFKQPSAIE--------NGPYDYTRSGNP 49

Query: 211 TTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL 270
           T   +E  ++ L+ A+      SGM+A +  +  L+  G  IV   D Y  +   +  V+
Sbjct: 50  TRDALESLLAKLDKADRAFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVV 108

Query: 271 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC 330
           P+ G+    ++   ++ + AA+      L + ESPTNP  +  D++ +S++ H +GA+V 
Sbjct: 109 PRSGVVVKRVNTTKLDEVAAAIGPQ-TKLVWLESPTNPRQQISDIRKISEMAHAQGALVL 167

Query: 331 IDGTFATPLNQKALSLGADLVLHSATKFIGGHND-VLAGSISGSGKLVTQIRNLHHVLGG 389
           +D +  +P+  + L LGAD+V+HSATKFI GH+D +         KL  ++  L +  G 
Sbjct: 168 VDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGS 227

Query: 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQ 449
            L P   +L +RG+KT+ LR+++Q   A ++A  L +HP+VK+V+Y GL  HP HH+   
Sbjct: 228 GLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFS 287

Query: 450 QMTGFGGVVSFEVLME 465
           Q  G G V SF     
Sbjct: 288 QAKGAGSVFSFITGSV 303

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} Length = 384

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

 Score =  173 bits (440), Expect = 2e-50
 Identities = 97/307 (31%), Positives = 156/307 (50%), Gaps = 12/307 (3%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
           +A+ +G           +  P+  +S Y F    E          + +Y R GNPT  VV
Sbjct: 6   IAVRSGLN--DDEQYGCVVPPIHLSSTYNFTGFNEP--------RAHDYSRRGNPTRDVV 55

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           +  ++ LEG    V+  +GMSA  ++    +  G  +V   DCY  +    +++  +   
Sbjct: 56  QRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY 115

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
               +D  D + L AA       L   ESP+NP LR VD+  +  L  + GA+  +D TF
Sbjct: 116 RVLFVDQGDEQALRAA-LAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTF 174

Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPN 394
            +P  Q  L+LGADLVLHS TK++ GH+DV+AG +      +VT++    + +G      
Sbjct: 175 LSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAF 234

Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 454
            +YL++RG++TL  R++     A  + K L+  P VK++++P L  +  H IA +Q  GF
Sbjct: 235 DSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGF 294

Query: 455 GGVVSFE 461
           G ++SFE
Sbjct: 295 GAMLSFE 301

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  169 bits (428), Expect = 1e-48
 Identities = 97/317 (30%), Positives = 159/317 (50%), Gaps = 21/317 (6%)

Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
            + AIHAGE +       ++  P+  ++ +     A  I        ++EY R  NP   
Sbjct: 9   ATKAIHAGEHVDV---HGSVIEPISLSTTFKQSSPANPIG-------TYEYSRSQNPNRE 58

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
            +E  ++ALE A+  +  +SG +  T  +L  +P G H V+  D Y  T  +   V    
Sbjct: 59  NLERAVAALENAQYGLAFSSGSAT-TATILQSLPQGSHAVSIGDVYGGTHRYFTKVA-NA 116

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV----KLVSDLCHKKGAIV 329
               T      +  L   +  N   L + E+PTNP L+  D+     L+      +  I+
Sbjct: 117 HGVETSFTNDLLNDLPQLIKENT-KLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVIL 175

Query: 330 CIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG 388
            +D TF +P     L+ GAD+V+HSATK+I GH+DV+ G ++ +   L  +++ L + +G
Sbjct: 176 VVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIG 235

Query: 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEA-HPKVKRVHYPGLKSHPEHHI- 446
              +P  A+L  RG+KTLHLRV+Q   +A ++A+ L A    V  V+YPGLK+HP + + 
Sbjct: 236 AIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVV 295

Query: 447 -ATQQMTGFGGVVSFEV 462
               +    GG++SF +
Sbjct: 296 LKQHRDALGGGMISFRI 312

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} Length = 331

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

 Score =  161 bits (409), Expect = 2e-46
 Identities = 85/251 (33%), Positives = 132/251 (52%), Gaps = 2/251 (0%)

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
            +E K++ LE AE+    ASGM A    +   + AG H+++    Y  T    E  L K 
Sbjct: 2   ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF 61

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
           G+    ID A    +E  L  N   ++F                V     +K  +V +D 
Sbjct: 62  GVEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDN 121

Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI--RNLHHVLGGAL 391
           TFA+P+    L LG D+V+HSATK+I GH DV+AG +     ++ ++  + +  + G  +
Sbjct: 122 TFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAII 181

Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM 451
           +P+ A+LI RG  TL +RV++    A ++A+ L  H  VK+V+YPGL  HP H IA +QM
Sbjct: 182 SPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM 241

Query: 452 TGFGGVVSFEV 462
             FG +++F+V
Sbjct: 242 KMFGSMIAFDV 252

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

 Score =  149 bits (376), Expect = 3e-41
 Identities = 79/309 (25%), Positives = 147/309 (47%), Gaps = 4/309 (1%)

Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELID-FKEKRRASFEYGRYGNPTTV 213
           +  ++AG    +     A+ + +   S+  F          + +      YGR G  T  
Sbjct: 4   TQLVNAGRS--KKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHF 61

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
            +++ M  LEG    V+   G +A    +LA +  G H++ T   Y  ++ F   +L K+
Sbjct: 62  SLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKL 121

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPF-LRCVDVKLVSDLCHKKGAIVCID 332
           G+T +  DP     +   L  N   +F     +    +  V   + +       AI+ ID
Sbjct: 122 GVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMID 181

Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN 392
            T+A  +  KAL  G D+ + +ATK++ GH+D + G+   + +   Q+R   +++G  ++
Sbjct: 182 NTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVD 241

Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 452
            + AY+  RG++TL +R++Q + ++L++A+ L  HP+V RV++P L     H    +  T
Sbjct: 242 ADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFT 301

Query: 453 GFGGVVSFE 461
           G  G+ SF 
Sbjct: 302 GSSGLFSFV 310

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 98.4 bits (244), Expect = 3e-23
 Identities = 42/269 (15%), Positives = 79/269 (29%), Gaps = 20/269 (7%)

Query: 206 RYGNPTTVVVEEKMSAL-----EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYR 260
            Y   +    +     L     +  +  V      SA    +LAL P             
Sbjct: 44  TYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGH 103

Query: 261 KTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSD 320
            +            + A   +   +  +   ++ + + +    +     +   + K V +
Sbjct: 104 PSIERS-----CKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVIN 158

Query: 321 LCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK 375
               K AIV +D      +        AL LGADLV+ S  K + G    L   ++G  +
Sbjct: 159 TAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGL---LAGKKE 215

Query: 376 LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL-RVQQQNSTALRMAKILEAHPKVKRVH 434
           LV +I       G    P     I R +K  +L R+++    A             +   
Sbjct: 216 LVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKA 275

Query: 435 YPGLKSHPEHHIATQQM-TGFGGVVSFEV 462
                +       T  +        +  +
Sbjct: 276 IDDNINIVYERTPTGFVIKRVYKDDTINI 304

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 60.7 bits (146), Expect = 1e-10
 Identities = 45/311 (14%), Positives = 97/311 (31%), Gaps = 21/311 (6%)

Query: 138 EALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEK 197
           +    LK  +   +     ++  GER  R   +            +   ++  L+D + K
Sbjct: 47  KIKLFLKFLSMMDTDKDPKSVRIGEREAR-TYSKIHEELSSGF-CHGIGRSGNLVDPQPK 104

Query: 198 RRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVML-LALVPAGGHIVTTT 256
              +       N   +    K   L        +++GMS S  +           ++   
Sbjct: 105 ASGASIMYALTNKI-LESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPY 163

Query: 257 DCYRKTRIFIETVLPKMGITATVIDPA----DMEGLEAALNNN----NVSLFFTESPTNP 308
             ++     +  V   M +  TV+D       +E +E A+       N     +     P
Sbjct: 164 ASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFP 223

Query: 309 FLRCVDVKLVSDLCHKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGH 362
                D+  ++ +C        I+G +A          +KA     D V+ S+ K +   
Sbjct: 224 PRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP 283

Query: 363 NDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR--VQQQNSTALRM 420
                   S   + + +I   +     A       + +  M + +    V+ Q ++   +
Sbjct: 284 IGG-GLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLL 342

Query: 421 AKILEAHPKVK 431
            ++L    K  
Sbjct: 343 DELLNDLSKKT 353

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 50.9 bits (121), Expect = 2e-07
 Identities = 28/284 (9%), Positives = 71/284 (25%), Gaps = 44/284 (15%)

Query: 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTR 263
           Y   G+     +E+ +  L G +  V    G  A  ++    +  G ++         TR
Sbjct: 71  YA--GSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTT-TR 127

Query: 264 IFIET-------VLPKMGITATVIDPA----DMEGLEAALNNNN-------VSLFFTESP 305
              E        ++      A++  P     D+  L   +                    
Sbjct: 128 FHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLA 187

Query: 306 TNPFLRCVDVKLVSDLCHKKGAIVCIDGT---FATPLNQKALSLGADLVLHSATKFIGGH 362
               +   +++ V ++    G  +  D T         ++  +   ++ +      +  +
Sbjct: 188 GGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSY 247

Query: 363 NDVLAGS-------------ISGSGKLVTQIRNL-----HHVLGGALNPNAAYLIIRGMK 404
            D    S                  ++ +  + L          G L       +  G++
Sbjct: 248 ADGCTMSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLR 307

Query: 405 TLHLR--VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHI 446
                  ++ +      +   L            G     +   
Sbjct: 308 EAMQYEYIEHRVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARR 351

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 46/344 (13%), Positives = 96/344 (27%), Gaps = 38/344 (11%)

Query: 131 GLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT-- 188
           G     LE    L   A   S++       GER GR      + + +V    Y F     
Sbjct: 23  GWDESTLELF--LHELAVMDSNNFLGNCGVGEREGR------VASALVARRHYRFIHGIG 74

Query: 189 --AELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL- 245
              ++   + K   S    +  N   + V +       A   V+  +   + T+  L L 
Sbjct: 75  RSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLR 134

Query: 246 --VPAGGHIVTTTDCYR----------KTRIFIETVLPKMGITATVIDPADMEGLEAALN 293
              P   +I+      +             + IE VL          D   +E     L 
Sbjct: 135 HKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGD---ELRTDLKAVEAKIQELG 191

Query: 294 NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT------FATPLNQKALSLG 347
             ++    + +          ++ ++ +C        ++            L Q+   +G
Sbjct: 192 PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 251

Query: 348 -ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR--GMK 404
             D  + S  K         A     +   +  I  ++     A       + +   G  
Sbjct: 252 RIDAFVQSLDKNFMVPVGG-AIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCS 310

Query: 405 TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIAT 448
                ++++    + ++  L+   +           +P     T
Sbjct: 311 GYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMT 354

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 47.2 bits (111), Expect = 3e-06
 Identities = 25/249 (10%), Positives = 59/249 (23%), Gaps = 32/249 (12%)

Query: 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAG--------GHIVTT 255
           +   G+ +   + E +  + G + T+    G  A  + +  L+             +V  
Sbjct: 70  FS--GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAF 127

Query: 256 TDCYRKTRIFIETV---------------LPKMGITATVIDPADMEGLEAALNNNNVSLF 300
           ++ +  T      +                          D   +E     +  NNV   
Sbjct: 128 SNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYI 187

Query: 301 FTESPTN----PFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSAT 356
                +N      +   ++K +  +  K    V +D       N   +            
Sbjct: 188 VATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAE-NAYFIKQREAEYKDWTI 246

Query: 357 KFIGGHNDVLAGSISGSGK--LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 414
           + I       A  ++ S K   +  +  L  +   +            +           
Sbjct: 247 EQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGL 306

Query: 415 STALRMAKI 423
                    
Sbjct: 307 EGGAMERLA 315

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 31/251 (12%), Positives = 75/251 (29%), Gaps = 15/251 (5%)

Query: 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIE 267
             P    +  ++    G +   +      A   ++ +L      +V   +C+  + +  E
Sbjct: 45  TPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE 104

Query: 268 TVLPKMGITATVIDPADMEGLEA-------ALNNNNVSLFFTESPTNPFLRCVDVKLVSD 320
                + +      P      E              V L     P   +    DVK ++ 
Sbjct: 105 RAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAK 164

Query: 321 LCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ 379
           +C +    + ++G +A   +      +GAD ++ S  K +     +  G +    +    
Sbjct: 165 VCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPI--GVMGMKEEWAEI 222

Query: 380 IRNLHHVLGGALNPN-----AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVH 434
           +                       II  M +     ++       + K      +++++ 
Sbjct: 223 VLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLG 282

Query: 435 YPGLKSHPEHH 445
              L  +P +H
Sbjct: 283 IKQLGDNPHNH 293

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 198 RRASFEYGRYGN-PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTT 256
            +A      YG  PT   +E   +   G E+ + + SG   + V ++A    G  ++   
Sbjct: 21  AQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEA 80

Query: 257 DCY 259
           D +
Sbjct: 81  DSH 83

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 20/199 (10%), Positives = 47/199 (23%), Gaps = 30/199 (15%)

Query: 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAG-------------- 249
           Y   G+     +++K   L   +  +    G  A  ++   L+                 
Sbjct: 71  YA--GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISN 128

Query: 250 -------GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFT 302
                   H+                            D   ++   A    +N+    +
Sbjct: 129 FHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVS 188

Query: 303 ESPTNP----FLRCVDVKLVSDLCHKKGAIVCIDGT---FATPLNQKALSLGADLVLHSA 355
               N      +   ++K V ++  + G  V +D           +       +  +   
Sbjct: 189 TVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEV 248

Query: 356 TKFIGGHNDVLAGSISGSG 374
              +  + D L  S     
Sbjct: 249 IFDMYKYADALTMSAKKDP 267

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	466
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	100.0
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	100.0
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	100.0
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	100.0
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	100.0
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	100.0
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	100.0
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	100.0
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.9
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.89
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.89
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.87
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.87
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.86
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.85
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.85
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.84
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.83
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.83
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.82
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.82
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.81
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.81
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.81
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.81
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.8
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.8
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.79
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.79
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.79
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.79
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.78
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.78
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.77
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.77
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.76
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.76
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.76
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.75
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.74
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.74
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.73
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.73
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.73
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.73
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.68
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.68
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.66
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.66
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.66
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.66
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.64
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.64
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.63
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.61
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.61
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.6
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.59
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.58
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.56
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.54
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.53
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.51
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.5
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.48
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.48
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.47
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.46
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.45
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.44
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.44
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.38
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.38
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.3
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.26
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.26
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.23
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.12
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.05
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	98.95
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	98.83
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	98.81
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	98.75
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.16

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=5.5e-66  Score=531.25  Aligned_cols=319  Identities=86%  Similarity=1.277  Sum_probs=304.5

Q ss_pred             hccccCCCcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhC
Q 012296          145 NEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEG  224 (466)
Q Consensus       145 ~~~~~~~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g  224 (466)
                      +|.+|++++.|++||+|++.+++..+++++||||+|+||.|++.+++.+.+.++..+|.|+|.+||+++.||++||+++|
T Consensus         2 ~~~~~~~~~~T~avH~G~~~~~~~~~~av~~PI~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~LE~~la~LEg   81 (398)
T d1qgna_           2 KYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEG   81 (398)
T ss_dssp             CCCTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHT
T ss_pred             CccccCCCCccEEEeCCCcCCCCCCCCCccCCeeCCCcEEeCCHHHHHHHhcCCcCCceecCCCChHHHHHHHHHHHHhC
Confidence            47789999999999999876555668999999999999999999999999988889999999999999999999999999


Q ss_pred             CCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHh-hcCCCceEEEEe
Q 012296          225 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA-LNNNNVSLFFTE  303 (466)
Q Consensus       225 ~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~a-i~~~~tklV~le  303 (466)
                      ++.+++++|||+|+.+++.+++++||+||+.+..|++++.++...++++|+++.+++..+.++.++. +++ +|++||+|
T Consensus        82 g~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~-~t~~v~~E  160 (398)
T d1qgna_          82 AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQK-KVNLFFTE  160 (398)
T ss_dssp             CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHS-CEEEEEEE
T ss_pred             CceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhcccccccccccccccccchhhhhhhhccc-cceEEEcc
Confidence            9999999999999999999999999999999999999999999999999999999997777766554 455 59999999


Q ss_pred             CCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHH
Q 012296          304 SPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL  383 (466)
Q Consensus       304 sP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~  383 (466)
                      +|+||+..+.||++|+++||++|+++|||+||++|+.++|+++|+|||++|+|||++||+|+++|+++++++++.+++.+
T Consensus       161 spsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~  240 (398)
T d1qgna_         161 SPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL  240 (398)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH
T ss_pred             CccccccccchHHHHHHHHhhcCCEEEecceeeccccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEec
Q 012296          384 HHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVL  463 (466)
Q Consensus       384 ~~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~  463 (466)
                      +..+|..++|+++|+++|+++||..||+++++|+..|++||++||+|++|+||+|++||+|+++++|++|+|+|++|+++
T Consensus       241 ~~~~G~~l~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~  320 (398)
T d1qgna_         241 HHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD  320 (398)
T ss_dssp             HHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES
T ss_pred             cccCCCcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             c
Q 012296          464 M  464 (466)
Q Consensus       464 ~  464 (466)
                      +
T Consensus       321 g  321 (398)
T d1qgna_         321 G  321 (398)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=100.00  E-value=9.9e-66  Score=528.83  Aligned_cols=310  Identities=38%  Similarity=0.671  Sum_probs=297.4

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +|+|++||+|+.+  +..+++++||||+|+||.|++.+++.+.+.++..+|.|+|.+||+++.||+.|++++|++.++++
T Consensus         7 ~f~T~~ih~G~~~--~~~~g~v~pPI~~sST~~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEgg~~a~~~   84 (397)
T d1y4ia1           7 GFNTQIVHAGQQP--DPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLAT   84 (397)
T ss_dssp             CHHHHHHHTTCCC--CTTTCCSSCCCCCCSCCCCSSHHHHHHHHHSCSSSSCCCTTSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccceeEeCCCCC--CCCCCCccCCccCCCCeeeCCHHHHHHhhcCCcCCceeeCCCCHHHHHHHHHHHHHhCCccceee
Confidence            5899999999875  34589999999999999999999999999888889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +|||+|+.+++.+++++||+||+++..|++++.++...++++|++++++|..|+++++++++++ |++||+|+|+||+..
T Consensus        85 sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~d~~~~~~~i~~~-Tklv~~Esp~NP~l~  163 (397)
T d1y4ia1          85 ASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPE-TKVVYIETPANPTLS  163 (397)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTT-EEEEEEESSCTTTCC
T ss_pred             hHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccCCCCHHHHHHhcCCC-CcEEEecCCccccee
Confidence            9999999999999999999999999999999999998899999999999999999999999885 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHH--HHHHHhCC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGG  389 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~--~~~~~~G~  389 (466)
                      +.||++|+++||++|+++++|+||++|+.++|+++|+|||++|+|||++||+|+++|+++++++.+.+++  .++..+|.
T Consensus       164 v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~  243 (397)
T d1y4ia1         164 LVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGG  243 (397)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCC
T ss_pred             ecccHHHHHHhhcCCceEEecCcccCcccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999887654  55667899


Q ss_pred             CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       390 ~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      .++|+++|+++|+|+||..||+++++|+.+|++||++||.|++|+||+|++||+|+++++||+|+||||||++++
T Consensus       244 ~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~  318 (397)
T d1y4ia1         244 CMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG  318 (397)
T ss_dssp             CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETT
T ss_pred             cCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999976

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=1.6e-65  Score=526.83  Aligned_cols=312  Identities=37%  Similarity=0.582  Sum_probs=263.2

Q ss_pred             CCCcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEE
Q 012296          150 LSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV  229 (466)
Q Consensus       150 ~~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l  229 (466)
                      |.+|+|++||+|..+  +..+++++||||+|+||.|++.+++.+.+.++..+|.|+|.+||+++.||++|++++|++.++
T Consensus         1 ~~g~~T~~vH~G~~~--~~~~g~v~pPI~~ssT~~f~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEg~~~a~   78 (392)
T d1gc0a_           1 LPGFATRAIHHGYDP--QDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGL   78 (392)
T ss_dssp             CCCHHHHHHHTTCCG--GGGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEE
T ss_pred             CcCcchhceeCCCCC--CCCCCCeeCCccCCCCEeeCCHHHHHHhhcCCcCCceecCCCChHHHHHHHHHHHHhCCccee
Confidence            457899999999765  346889999999999999999999888888888899999999999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCC
Q 012296          230 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPF  309 (466)
Q Consensus       230 ~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPt  309 (466)
                      +++|||+|+.+++.+++++||+||+++..|++++.++...++++|+++.++|..|+++++++++++ |++||+|+|+||+
T Consensus        79 ~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~d~~~~~~ai~~~-t~lv~~Esp~NP~  157 (392)
T d1gc0a_          79 ALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPA-TRVIYFESPANPN  157 (392)
T ss_dssp             EESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTT-EEEEEEESSCTTT
T ss_pred             ehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCccCHHHHHHhCCCC-CeEEEecccccce
Confidence            999999999999999999999999999999999999999999999999999999999999999986 9999999999999


Q ss_pred             cccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHH--HHHHHh
Q 012296          310 LRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVL  387 (466)
Q Consensus       310 G~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~--~~~~~~  387 (466)
                      +.+.||++|+++||++|+++++|+||++|+.++|+++|+|||++|+|||++||+|+++|+++++++++.+++  ..+..+
T Consensus       158 l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~  237 (392)
T d1gc0a_         158 MHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMT  237 (392)
T ss_dssp             CCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHT
T ss_pred             eeecchHHHHHHHHhcCCEEEEecCccCccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999887654  567778


Q ss_pred             CCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          388 GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       388 G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      |..++|++||+++++++||..||+++++|+++++++|++||.|++|+||++++||+|+++++|+.|+|||+||+|++
T Consensus       238 G~~~~p~da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~  314 (392)
T d1gc0a_         238 GAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG  314 (392)
T ss_dssp             CCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT
T ss_pred             CCcCChhhHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999975

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.8e-63  Score=505.87  Aligned_cols=303  Identities=32%  Similarity=0.541  Sum_probs=287.9

Q ss_pred             CCcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 012296          151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (466)
Q Consensus       151 ~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~  230 (466)
                      ++++|++||+|..+  +..+++++||||+|+||.|++.+        ...+|.|+|.+||+++.||++|++++|++.+++
T Consensus         1 ~k~~T~~vh~G~~~--~~~~gav~pPI~~sst~~~~~~~--------~~~~~~Y~R~~nPt~~~le~~la~LEgg~~a~~   70 (384)
T d1cs1a_           1 RKQATIAVRSGLND--DEQYGCVVPPIHLSSTYNFTGFN--------EPRAHDYSRRGNPTRDVVQRALAELEGGAGAVL   70 (384)
T ss_dssp             CCHHHHHHHTTTTC--CTTTCBSSCCBCCCSBBCCSBTT--------BCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CChhhheeeCCCCC--CCCCCCccCCccCCCCeecCCCC--------cccCCcccCCCCHHHHHHHHHHHHHhCCCceEE
Confidence            46899999999875  34689999999999999999753        345799999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCc
Q 012296          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (466)
Q Consensus       231 ~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG  310 (466)
                      ++|||+|+..++.+++++||+|++++..|++++.++...+++.|+++.+++..|.++++++++++ |++||+|+|+||+.
T Consensus        71 ~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~d~~~~~~~~~~~-t~~v~~EspsNP~l  149 (384)
T d1cs1a_          71 TNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEK-PKLVLVESPSNPLL  149 (384)
T ss_dssp             ESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTC-CSEEEEECSCTTTC
T ss_pred             ecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccccccccccCCCHHHHHhhcccc-ccEEEEeccccccc
Confidence            99999999999999999999999999999999999998899999999999999999999999986 99999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhCC
Q 012296          311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG  389 (466)
Q Consensus       311 ~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G~  389 (466)
                      .+.||++|+++||++|+++|||+||++|+.++|+++|+|||++|+|||++||+|+++|+++++ +++.++++..+..+|.
T Consensus       150 ~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~  229 (384)
T d1cs1a_         150 RVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGV  229 (384)
T ss_dssp             CCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTC
T ss_pred             eeccHHHHhhhhhhcCcEEEEeccccCcccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhh
Confidence            999999999999999999999999999999999999999999999999999999999998885 5667888888999999


Q ss_pred             CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       390 ~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      .++|++||+++++|+||..||+++++|+++|++||++||.|++|+||+|++||+|+++++|+.|+|+|++|++++
T Consensus       230 ~~~p~~a~ll~rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~  304 (384)
T d1cs1a_         230 TGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG  304 (384)
T ss_dssp             BCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS
T ss_pred             ccccccHHHHhhccchhHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999975

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.2e-62  Score=509.33  Aligned_cols=310  Identities=31%  Similarity=0.476  Sum_probs=285.5

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|++||+|..+  +..+++++||||+|+||.|++.+++.+.+.++..+|.|+|.+||+++.||++|++++|++.++++
T Consensus         2 k~~T~~vh~g~~~--~~~~gsv~pPI~~sstf~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~LE~~la~LE~~~~a~~~   79 (421)
T d2ctza1           2 RFETLQLHAGYEP--EPTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALAT   79 (421)
T ss_dssp             CHHHHHHHTTCCC--CTTTCBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             ChhHhheeCCCCC--CCCCCCccCCccCCCCeecCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence            4889999999875  44689999999999999999999999999888889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCC-HHHHHHhhcCCCceEEEEeCCCCCCc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPAD-MEGLEAALNNNNVSLFFTESPTNPFL  310 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~D-le~Le~ai~~~~tklV~lesP~NPtG  310 (466)
                      +|||+|+.+++.+++++||+||+++..|++++.++...++++|+++.++|..+ .+.+++.++++ |++||+|+|+||++
T Consensus        80 ~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~~~~~~~-t~li~~EtpsNP~l  158 (421)
T d2ctza1          80 ASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEK-TRAWWVESIGNPAL  158 (421)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTT-EEEEEEESSCTTTC
T ss_pred             cChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceecccccCcchhccccCCC-ceEEEEcCCCccee
Confidence            99999999999999999999999999999999999999999999999998765 45666667775 99999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEeCCCC-CCCcccccccCCcEEEECCccccCccccceeEEEEeCHH--------------
Q 012296          311 RCVDVKLVSDLCHKKGAIVCIDGTFA-TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK--------------  375 (466)
Q Consensus       311 ~v~dl~~Ia~la~~~gillIvDea~a-~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~e--------------  375 (466)
                      .+.||++|+++||++|+++|+|+|++ +|+.++|+++|+|||++|+|||++||+|+++|+++.+++              
T Consensus       159 ~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~  238 (421)
T d2ctza1         159 NIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEP  238 (421)
T ss_dssp             CCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSC
T ss_pred             EecchHHHHHHHHhcCCceEecccccccceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCC
Confidence            99999999999999999999999998 789999999999999999999999999999999997542              


Q ss_pred             -----------------HHHHHH-HHHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCC
Q 012296          376 -----------------LVTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPG  437 (466)
Q Consensus       376 -----------------li~~l~-~~~~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPg  437 (466)
                                       ++.+++ ...+.+|..++|++||+++|+|+||..||+++++|+..++++|++||.|++|+||+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~TL~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPg  318 (421)
T d2ctza1         239 QPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPG  318 (421)
T ss_dssp             BGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTT
T ss_pred             chhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhccCCCeeEEecCC
Confidence                             122222 24456899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHhhcC-CcceEEEEEecc
Q 012296          438 LKSHPEHHIATQQMT-GFGGVVSFEVLM  464 (466)
Q Consensus       438 l~s~p~~~~~~~~~~-g~Gg~vsfel~~  464 (466)
                      |++||+|+++++||. |+|+|+||++++
T Consensus       319 L~s~p~~~~a~~~~~g~~G~~~sf~l~~  346 (421)
T d2ctza1         319 LPHHPHHDRAQKYFKGKPGAVLTFGLKG  346 (421)
T ss_dssp             STTCTTHHHHHHHHTTCCCSEEEEEETT
T ss_pred             cCCCccHHHHHHhcCCCCceEEEEEecC
Confidence            999999999999996 479999999975

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=100.00  E-value=3.1e-62  Score=503.48  Aligned_cols=309  Identities=33%  Similarity=0.588  Sum_probs=293.0

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|++||+|..+  + .++++.||||+|+||.|++.+++.+.+.++..+|.|+|.+||+++.||++|++++|++.++++
T Consensus         4 ~~~T~~vh~g~~~--d-~~gav~~PI~~sst~~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~le~~la~LEg~~~a~~~   80 (394)
T d1e5ea_           4 TPATACIHANPQK--D-QFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVAT   80 (394)
T ss_dssp             CHHHHHHHSSCCC--C-TTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CHHHHheeCCCCC--C-CCCCeeCCccCCCCeeeCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCcceeee
Confidence            4789999999764  2 478999999999999999999999999988889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +|||+|+..++.+++++||+|++.+..|++++.++...++++|++++++|..|+++++++++++ +++||+|+|.||++.
T Consensus        81 sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~d~~~~~~~i~~~-t~lv~~Etp~NP~l~  159 (394)
T d1e5ea_          81 SSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPN-TKIVYFETPANPTLK  159 (394)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTT-EEEEEEESSCTTTCC
T ss_pred             ccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeeccCCCCHHHHHHhhccc-ccEEEEeccCCccee
Confidence            9999999999999999999999999999999999998899999999999999999999999986 999999999999999


Q ss_pred             cccHHHHHHHHHh-cCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHH--HHHHhC
Q 012296          312 CVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHHVLG  388 (466)
Q Consensus       312 v~dl~~Ia~la~~-~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~--~~~~~G  388 (466)
                      +.|++++++++++ +|+++|+|+||++|+.++|+++|+|||++|+|||++||+|+++|+++++++.+..++.  +++.+|
T Consensus       160 v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G  239 (394)
T d1e5ea_         160 IIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITG  239 (394)
T ss_dssp             CCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCC
T ss_pred             eehhhhhhhccccccCeEEEecCcccCcccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhC
Confidence            9999999887765 7899999999999999999999999999999999999999999999999988876554  355689


Q ss_pred             CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       389 ~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ..++|++||+++|+|+||..||+++++|+..+++||++||+|++|+||++++||+|+++++||+|+|+|++|++++
T Consensus       240 ~~lsp~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~  315 (394)
T d1e5ea_         240 SVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS  315 (394)
T ss_dssp             CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred             CCCChHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999876

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.6e-62  Score=503.69  Aligned_cols=311  Identities=27%  Similarity=0.461  Sum_probs=295.4

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccC-CccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRA-SFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~-~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~  230 (466)
                      |++|++||+|+.+  +..+++++||||+|+||.|++.++..+.+.+... .|.|+|.+||+++.||++|++++|++.+++
T Consensus         1 k~~T~~vh~g~~~--~~~~g~v~pPi~~sst~~f~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEg~~~a~~   78 (391)
T d1cl1a_           1 KLDTQLVNAGRSK--KYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVL   78 (391)
T ss_dssp             CHHHHHHHTTCCH--HHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTCCCCTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CcccceecCCCCC--CCCCCCccCCeeCCCceeeCCHHHHHHHhcCCccCceEeECCCChhHHHHHHHHHHHhCCccEEE
Confidence            5789999999765  3457899999999999999999887776666544 589999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCc
Q 012296          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (466)
Q Consensus       231 ~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG  310 (466)
                      ++|||+|+.+++.+++++||+||+.+..|++++.++...+.+.|+++.++|..|.++++++++++ +++||+|+|+||+.
T Consensus        79 ~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~d~~~~~~~i~~~-t~~i~~EtpsNP~l  157 (391)
T d1cl1a_          79 FPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPN-TKIVFLESPGSITM  157 (391)
T ss_dssp             ESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGTCCTT-EEEEEEESSCTTTC
T ss_pred             eccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccCccccccccccccc-cceeeecccCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999985 99999999999999


Q ss_pred             ccccHHHHHHHHHh--cCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhC
Q 012296          311 RCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG  388 (466)
Q Consensus       311 ~v~dl~~Ia~la~~--~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G  388 (466)
                      .+.|+++|+++|++  +|+++|||+||++|+.++|+++|+|+|++|+|||++||+|+++|++++++++.+++...+..+|
T Consensus       158 ~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G  237 (391)
T d1cl1a_         158 EVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMG  237 (391)
T ss_dssp             CCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTT
T ss_pred             cccccHHHHHHHHhccCCcEEEEeccccchhhhcccccccceEEeecchhccccccccccceeccccccccchhhhhccc
Confidence            99999999999977  4999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEeccC
Q 012296          389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLME  465 (466)
Q Consensus       389 ~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~~  465 (466)
                      ..++|++||+++|+++||..||+++++|+.+++++|++||+|.+|+||++++||+|+++++||+|+|||++|+++.+
T Consensus       238 ~~~~p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~  314 (391)
T d1cl1a_         238 QMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKK  314 (391)
T ss_dssp             CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC
T ss_pred             ccCCchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999853

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.6e-61  Score=493.13  Aligned_cols=300  Identities=33%  Similarity=0.597  Sum_probs=283.7

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +++|+++|+|...+   .+++++||||+|+||.|++..        +..+|.|+|.+||+++.||++||+++|++.++++
T Consensus         2 ~~~t~~~h~~~~~d---p~ga~~~PI~~sstf~~~~~~--------~~~~~~Y~R~~nPt~~~le~~la~LE~~~~a~~f   70 (380)
T d1ibja_           2 SVSTLLVNLDNKFD---PFDAMSTPLYQTATFKQPSAI--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFCF   70 (380)
T ss_dssp             CHHHHHTCCCCSSC---TTCCSSCCCCCCSBCCCSSSS--------CCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CHhHhhhcCCCCCC---CCCCccCCccCCcceecCCCC--------ccCCceeeCCCChHHHHHHHHHHHHcCCceEEeh
Confidence            37899999998763   278999999999999999852        3467999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +|||+|+. ++.+++++||+||+.++.|++++.++...++++|+++.+++..++++++++++++ |++||+|+|+||++.
T Consensus        71 sSGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~ai~~~-t~li~~EtpsNP~l~  148 (380)
T d1ibja_          71 TSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ-TKLVWLESPTNPRQQ  148 (380)
T ss_dssp             SSHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSS-EEEEEECSSCTTTCC
T ss_pred             hhHHHHHH-HHHHhhCCCCEEEEEecccccccchhhhhhccccccccccCcchHHHHHHHhccC-ccEEEeccccccccc
Confidence            99999996 5678999999999999999999999999999999999999999999999999885 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhCCC
Q 012296          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA  390 (466)
Q Consensus       312 v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G~~  390 (466)
                      +.||++|+++||++|+++|||+||++++.++|+++|+|+|++|+|||++||+|+++|+++.+ +++.++++..+..+|..
T Consensus       149 v~Di~~i~~iA~~~g~~~vVDnT~atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~  228 (380)
T d1ibja_         149 ISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSG  228 (380)
T ss_dssp             CCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCB
T ss_pred             cccHHHHHHHHHHcCCeEEeeccccccccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCc
Confidence            99999999999999999999999999999999999999999999999999999999998776 56778899999999999


Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEecc
Q 012296          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLM  464 (466)
Q Consensus       391 lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~  464 (466)
                      ++|++||+++|+++|+..||+++++|++++++||++||.|++|+||||++||+|+++++||+|+|+|++|++++
T Consensus       229 l~p~~a~ll~rgl~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~  302 (380)
T d1ibja_         229 LAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS  302 (380)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC
T ss_pred             CCHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCccccccccccccccccccccccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998875

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5e-59  Score=479.12  Aligned_cols=300  Identities=33%  Similarity=0.562  Sum_probs=278.3

Q ss_pred             CcccceeccCCcCCCCCCCCcccCCccccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 012296          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (466)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~  231 (466)
                      +|+|++||+|+.+  + .+++++||||+|+||.|++.+       .....|.|+|.+||+++.||++|++++|++.++++
T Consensus         7 ~f~T~~vHag~~~--d-~~gav~pPI~~ssTf~~~~~~-------~~~~~y~YsR~gnPT~~~lE~~la~LE~~~~a~~~   76 (393)
T d1n8pa_           7 KFATKAIHAGEHV--D-VHGSVIEPISLSTTFKQSSPA-------NPIGTYEYSRSQNPNRENLERAVAALENAQYGLAF   76 (393)
T ss_dssp             CHHHHHHHTTCCC--C-SSCCSSCCBCCCSBCCBSSSS-------SBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CcchheEECCCCC--C-CCCCccCCcCCCCceecCCcc-------cccCCeeeeCCCChHHHHHHHHHHHHhCCceEEEe
Confidence            5899999999865  2 378999999999999998863       23457999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcc
Q 012296          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (466)
Q Consensus       232 sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~  311 (466)
                      +|||+|+.++ ..++.+||+|++....|++++.++...++++|+++.+++. +.++++++++++ +++||+|+|.||+..
T Consensus        77 sSGmaAi~~~-l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~-~~~~~~~~i~~~-t~lv~~EspsNP~l~  153 (393)
T d1n8pa_          77 SSGSATTATI-LQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTND-LLNDLPQLIKEN-TKLVWIETPTNPTLK  153 (393)
T ss_dssp             SCHHHHHHHH-HHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESS-HHHHHHHHSCSS-EEEEEECSSCTTTCC
T ss_pred             cCchhHHHhh-hhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEeec-chHHHHHHhhhh-cceeEecCcchhhhh
Confidence            9999999755 5778999999999999999999999999999999999884 568999999885 999999999999999


Q ss_pred             cccHHHHHHHHH----hcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHH
Q 012296          312 CVDVKLVSDLCH----KKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHV  386 (466)
Q Consensus       312 v~dl~~Ia~la~----~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~  386 (466)
                      +.||++|+++||    ++|+++|||+||++|+.++|+++|+|||++|+|||++||+|+++|+++.+ +++.++++..+..
T Consensus       154 v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~  233 (393)
T d1n8pa_         154 VTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA  233 (393)
T ss_dssp             CCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhcccCCceEEEecCccCcccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhh
Confidence            999999999999    67899999999999999999999999999999999999999999998765 5678899999999


Q ss_pred             hCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEeCCCCCCCchHHHHHhhcC--CcceEEEEEec
Q 012296          387 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAH-PKVKRVHYPGLKSHPEHHIATQQMT--GFGGVVSFEVL  463 (466)
Q Consensus       387 ~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~-p~V~~V~yPgl~s~p~~~~~~~~~~--g~Gg~vsfel~  463 (466)
                      +|..++|+++|+++++++||..||+++++|++++++||++| |.|++|+||++++||+|+++++|+.  |+|+|+||+|+
T Consensus       234 ~G~~~~p~~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~  313 (393)
T d1n8pa_         234 IGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIK  313 (393)
T ss_dssp             HCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEES
T ss_pred             cCCCCChHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEe
Confidence            99999999999999999999999999999999999999987 8899999999999999999999995  57999999998


Q ss_pred             c
Q 012296          464 M  464 (466)
Q Consensus       464 ~  464 (466)
                      +
T Consensus       314 ~  314 (393)
T d1n8pa_         314 G  314 (393)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=100.00  E-value=3.6e-50  Score=405.02  Aligned_cols=250  Identities=36%  Similarity=0.626  Sum_probs=238.3

Q ss_pred             HHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHHHHhhc
Q 012296          214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALN  293 (466)
Q Consensus       214 ~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~Le~ai~  293 (466)
                      +||++||+++|++.+++++|||+|+..++.+++++||+||+++..|++++.++...++++|++++++|..|++.++++++
T Consensus         2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~d~~~~~~~i~   81 (331)
T d1pffa_           2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK   81 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred             HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecccchhhHhhhcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEeCCCCCCcccccHHHHHHHH-HhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCccccceeEEEEe
Q 012296          294 NNNVSLFFTESPTNPFLRCVDVKLVSDLC-HKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG  372 (466)
Q Consensus       294 ~~~tklV~lesP~NPtG~v~dl~~Ia~la-~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg  372 (466)
                      ++ |++||+|+|+||+..+.|++++++++ +++|+++|+|+|+++|+.++|+++|+|||++|+|||++||+|+++|++++
T Consensus        82 ~~-t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~  160 (331)
T d1pffa_          82 PN-TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCS  160 (331)
T ss_dssp             TT-EEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEE
T ss_pred             cc-cceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccccccccCCCEEEecchhhcCCCCccccccccc
Confidence            86 99999999999999999999999985 67899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHH--HHHHhCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhh
Q 012296          373 SGKLVTQIRN--LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQ  450 (466)
Q Consensus       373 ~~eli~~l~~--~~~~~G~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~  450 (466)
                      +++...+.+.  .+..+|..++|++||+++++++|+..||+++++|+..++++|++||.|++|+||++++||+|+++++|
T Consensus       161 ~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~  240 (331)
T d1pffa_         161 RADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQ  240 (331)
T ss_dssp             CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHH
T ss_pred             cccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhc
Confidence            9877665543  45567999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcceEEEEEecc
Q 012296          451 MTGFGGVVSFEVLM  464 (466)
Q Consensus       451 ~~g~Gg~vsfel~~  464 (466)
                      +.|+|+|+||++++
T Consensus       241 ~~~~g~l~sf~l~~  254 (331)
T d1pffa_         241 MKMFGSMIAFDVDG  254 (331)
T ss_dssp             CSSCCSEEEEECSS
T ss_pred             ccccCcccceeecc
Confidence            99999999999986

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.90  E-value=1.9e-23  Score=207.81  Aligned_cols=214  Identities=14%  Similarity=0.249  Sum_probs=163.5

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-------
Q 012296          210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------  282 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-------  282 (466)
                      +..+.+|+.+|+++|.++++++++|++|+.+++.+++++||+||++.++|.+.+..    +...|.++.+++.       
T Consensus        47 ~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~----~~~~g~~v~~v~~~~~~~~~  122 (364)
T d2e7ja1          47 PIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVA----AERAGLNIALVPKTDYPDYA  122 (364)
T ss_dssp             CHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHHTTCEEEEECCCCTTTCC
T ss_pred             HHHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchH----HHhccceEEEeeeccccccc
Confidence            46788999999999999999999999999999999999999999999999886643    3456888888753       


Q ss_pred             CCHHHHHHhhcC----CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEECCcc
Q 012296          283 ADMEGLEAALNN----NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATK  357 (466)
Q Consensus       283 ~Dle~Le~ai~~----~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S~sK  357 (466)
                      .|++++++++++    .++++|++++|+||+|.+.|+++|+++|++||+++++|++++.+. ..+...+|+|+++.|+||
T Consensus       123 i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K  202 (364)
T d2e7ja1         123 ITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHK  202 (364)
T ss_dssp             CCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHH
T ss_pred             cCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhhhhhcccccccceeeecccc
Confidence            368899888853    236799999999999999999999999999999999999997654 345556789999999999


Q ss_pred             ccCccccceeEEEEeCHHHHHHHHHHHH--------HhCCCchHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHc
Q 012296          358 FIGGHNDVLAGSISGSGKLVTQIRNLHH--------VLGGALNPNAAYLIIRGMKTLHL---RVQQQNSTALRMAKILEA  426 (466)
Q Consensus       358 ~lgg~gdv~gG~ivg~~eli~~l~~~~~--------~~G~~lsp~~a~l~l~~L~tl~~---R~~~~~~na~~La~~L~~  426 (466)
                      ++++++  .+|++++++++++.+.....        ..+........+.+..+++.+..   ++.+..++++++.+.|++
T Consensus       203 ~~~~~g--~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  280 (364)
T d2e7ja1         203 SMAASG--PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEK  280 (364)
T ss_dssp             HSSCCS--SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCC--CEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999887  47999999887765432211        11222222222333334444332   334455677888888887


Q ss_pred             CCC
Q 012296          427 HPK  429 (466)
Q Consensus       427 ~p~  429 (466)
                      .+.
T Consensus       281 ~g~  283 (364)
T d2e7ja1         281 LGI  283 (364)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            643

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.89  E-value=1.6e-23  Score=211.64  Aligned_cols=203  Identities=21%  Similarity=0.195  Sum_probs=161.6

Q ss_pred             HHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHccCCCEEEEc-CCCCcchHHHHHhhcccCCceEEEeCCCCHHH
Q 012296          212 TVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTT-TDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (466)
Q Consensus       212 ~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~-~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~  287 (466)
                      .+.+++..++.++.   ++++++++|++|+..++.++.+++|.|+++ .+.|+.....+    +..|.+  +++..|+++
T Consensus        52 ~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~~~~~vi~~~~~~~~~~~~~~~----~l~g~~--~v~~~d~e~  125 (366)
T d2aeua1          52 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGHPSIERSC----KIVNAK--YFESDKVGE  125 (366)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHCCSEEEEECSSSSCCTHHHHHH----HHTTCE--EEEESCHHH
T ss_pred             HHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhCCCCEEEEecCCCcchhHHHHH----HhcCCe--EECCCCHHH
Confidence            46677777777764   457788888899999998876544444544 57888766443    335665  456679999


Q ss_pred             HHHhhcCCCceEEEEeCCCCCC-cccccHHHHHHHHHhcCCEEEEeCCCCCCCc-----ccccccCCcEEEECCccccCc
Q 012296          288 LEAALNNNNVSLFFTESPTNPF-LRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIGG  361 (466)
Q Consensus       288 Le~ai~~~~tklV~lesP~NPt-G~v~dl~~Ia~la~~~gillIvDea~a~~~~-----~~~l~~gaDivv~S~sK~lgg  361 (466)
                      |+++|+++ |++|++++|+||+ +.+.|+++|+++|++||+++++|++|+.++.     ..+...|+|++++|+||+++|
T Consensus       126 l~~~i~~~-tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~g  204 (366)
T d2aeua1         126 ILNKIDKD-TLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG  204 (366)
T ss_dssp             HHTTCCTT-EEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS
T ss_pred             HHHhcCCC-ceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEEecccccccc
Confidence            99999985 9999999998874 4677999999999999999999999875432     234567899999999999998


Q ss_pred             cccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHH
Q 012296          362 HNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH-LRVQQQNSTALRMAKIL  424 (466)
Q Consensus       362 ~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~-~R~~~~~~na~~La~~L  424 (466)
                      +.   +|+++++++++++++..+..+|.+.++..+++++++|+++. .|++++.++++.++..+
T Consensus       205 ~~---~G~i~~~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~  265 (366)
T d2aeua1         205 PR---GGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSK  265 (366)
T ss_dssp             CS---CEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHH
T ss_pred             cc---eeEEEecHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            74   89999999999999999888898899999999999998864 47888888877654433

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.89  E-value=1.9e-21  Score=197.34  Aligned_cols=213  Identities=15%  Similarity=0.197  Sum_probs=156.0

Q ss_pred             HHHHHHHHh----hhCC---CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC--
Q 012296          213 VVVEEKMSA----LEGA---ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (466)
Q Consensus       213 ~~Lee~LA~----l~g~---e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--  282 (466)
                      .+|++.+++    ..|.   .+.+++++|+ +++..++.+++++||.|++++|+|......+    ...|..+..++.  
T Consensus        70 ~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~----~~~~~~~v~~~~~~  145 (388)
T d1j32a_          70 PRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMV----KLAEGTPVILPTTV  145 (388)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHH----HHTTCEEEEECCCG
T ss_pred             HHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHH----HHhcCeEEEEeccc
Confidence            345555554    4453   3446666665 9999999999999999999999999866444    234445444432  


Q ss_pred             -----CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----cc------
Q 012296          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----AL------  344 (466)
Q Consensus       283 -----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----~l------  344 (466)
                           .|+++|+++++++ ++++++++|+||||.+++   +++|+++|+++|+++|+||+|.......    ++      
T Consensus       146 ~~~~~~d~~~l~~~~~~~-~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~  224 (388)
T d1j32a_         146 ETQFKVSPEQIRQAITPK-TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPE  224 (388)
T ss_dssp             GGTTCCCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHH
T ss_pred             ccccCCCHHHHHHhCCCC-CeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcc
Confidence                 3799999999885 999999999999999986   6778888999999999999986533211    11      


Q ss_pred             ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHH----hhHHHHHHHHHHHHHHHHH
Q 012296          345 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR----GMKTLHLRVQQQNSTALRM  420 (466)
Q Consensus       345 ~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~----~L~tl~~R~~~~~~na~~L  420 (466)
                      .....+++.|+||.|+.+|. +.||+++++++++.+.+.........+....+++..    ..+.+....+...++.+.+
T Consensus       225 ~~~~~i~~~S~SK~~~~~Gl-RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (388)
T d1j32a_         225 AYERSVVCSGFAKTYAMTGW-RVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYM  303 (388)
T ss_dssp             HHHTEEEEEESTTTTTCTTT-CCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHH
T ss_pred             cccceeEecCChhhhhcchh-HeEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Confidence            11245899999999998874 589999999999988776655554444443333222    2345666677788889999


Q ss_pred             HHHHHcCCCeE
Q 012296          421 AKILEAHPKVK  431 (466)
Q Consensus       421 a~~L~~~p~V~  431 (466)
                      .+.|++++++.
T Consensus       304 ~~~l~~~~g~~  314 (388)
T d1j32a_         304 LDALNAMPGLE  314 (388)
T ss_dssp             HHHHHTCTTCB
T ss_pred             HHHHHhCCCCE
Confidence            99999987654

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.87  E-value=2.6e-21  Score=194.45  Aligned_cols=225  Identities=13%  Similarity=0.098  Sum_probs=168.0

Q ss_pred             cCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          205 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       205 ~R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ++......+++++.||+++|+  ++.+++++|++++.+++.++ +++||+|++++..|+++...+....+..|+++.+++
T Consensus        45 ~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~  124 (381)
T d1elua_          45 NQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFP  124 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEEC
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhhhhcCCceEEEeccccceeeeccccccccccccccccc
Confidence            333345577899999999997  46777778889999999887 689999999999999988777666677899999887


Q ss_pred             CC-------CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhc----CCEEEEeCCCCCCC-cccccccCCc
Q 012296          282 PA-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK----GAIVCIDGTFATPL-NQKALSLGAD  349 (466)
Q Consensus       282 ~~-------Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~----gillIvDea~a~~~-~~~~l~~gaD  349 (466)
                      ..       +.+.++++++++ |+++++++++|+||.+.|+++|.++|+++    ++++++|++++.+. ..+...+++|
T Consensus       125 ~~~~~~~~~~~~~l~~~i~~~-t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D  203 (381)
T d1elua_         125 VAATLNQGDAAAVLANHLGPK-TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVD  203 (381)
T ss_dssp             CGGGSSSSCHHHHHHTTCCTT-EEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCS
T ss_pred             cccccccchHHHHHHhhhccc-ccccccccccccccccchhhHHHHHHhhcccccccccccccccccccccccccccccc
Confidence            42       256677778775 99999999999999999999999999985    69999999987653 3444566899


Q ss_pred             EEEECCccccCccccceeEEEEeCHHHHHHHHHHHH----------------------HhCCCchHHHHHHHHHhhH---
Q 012296          350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH----------------------VLGGALNPNAAYLIIRGMK---  404 (466)
Q Consensus       350 ivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~----------------------~~G~~lsp~~a~l~l~~L~---  404 (466)
                      +++.|++|+++++.  ..|+++.++++.+++.....                      ...++.+....+.+...++   
T Consensus       204 ~~~~s~~K~~~~p~--G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~  281 (381)
T d1elua_         204 YYAFTGHKWFAGPA--GVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQ  281 (381)
T ss_dssp             EEEEESSSTTCCCT--TCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccc--hhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHH
Confidence            99999999999886  35788888776655421100                      0111222222222222222   


Q ss_pred             H---HHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 012296          405 T---LHLRVQQQNSTALRMAKILEAHPKVKR  432 (466)
Q Consensus       405 t---l~~R~~~~~~na~~La~~L~~~p~V~~  432 (466)
                      .   ...+.++..++++.+.+.|++.|++..
T Consensus       282 ~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~  312 (381)
T d1elua_         282 RQGTAEERYQAICQRSEFLWRGLNQLPHVHC  312 (381)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred             HhcccccchhhhhhHHHHHHHHHhcCCCeEe
Confidence            2   245567778889999999999998754

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=1.8e-20  Score=189.28  Aligned_cols=209  Identities=12%  Similarity=0.136  Sum_probs=147.5

Q ss_pred             HHHHHHHHhhh----CC---CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC---
Q 012296          213 VVVEEKMSALE----GA---ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---  281 (466)
Q Consensus       213 ~~Lee~LA~l~----g~---e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd---  281 (466)
                      .+|++.+++++    +.   .+.+++++|. +|+..++.+++++||.|++++|.|......    ++..|.++..++   
T Consensus        71 ~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~----~~~~g~~~~~v~~~~  146 (382)
T d1b5pa_          71 PELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEM----VRFAGGVVVEVETLP  146 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHH----HHHTTCEEEEEECCG
T ss_pred             HHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHH----HHHhcCeEEEEeccc
Confidence            35666666654    32   2445556665 999999999999999999999999986543    344566666553   


Q ss_pred             ----CCCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----cccc--cCC
Q 012296          282 ----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALS--LGA  348 (466)
Q Consensus       282 ----~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~~l~--~ga  348 (466)
                          ..|+++++++++++ ++++++++|+||||.+++   +++|+++|+++|+++|+||+|......    .+..  ...
T Consensus       147 ~~~~~~d~~~l~~~~~~~-~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  225 (382)
T d1b5pa_         147 EEGFVPDPERVRRAITPR-TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEH  225 (382)
T ss_dssp             GGTTCCCHHHHHTTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTT
T ss_pred             ccccCCCHHHHHHhCCCC-CeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCC
Confidence                23899999999875 999999999999999986   678899999999999999998754321    1221  124


Q ss_pred             cEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHH---HHh---hH-HHHHHHHHHHHHHHHHH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI---IRG---MK-TLHLRVQQQNSTALRMA  421 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~---l~~---L~-tl~~R~~~~~~na~~La  421 (466)
                      .+++.|+||.|+.+|. +.||+++++++++.+...+.......+......+   +..   .+ .+....+...++++.+.
T Consensus       226 ~i~~~s~SK~~~~~Gl-R~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (382)
T d1b5pa_         226 TLTVNGAAKAFAMTGW-RIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLL  304 (382)
T ss_dssp             EEEEEESTTTTTCGGG-CCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecchhhccCcHh-heEEEEECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHH
Confidence            5899999999998874 5799999999999887766655444333322221   211   11 22333344556666777


Q ss_pred             HHHHcC
Q 012296          422 KILEAH  427 (466)
Q Consensus       422 ~~L~~~  427 (466)
                      +.|.+.
T Consensus       305 ~~l~~~  310 (382)
T d1b5pa_         305 EGLTAL  310 (382)
T ss_dssp             HHHHHH
T ss_pred             HHHhhc
Confidence            777664

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=1.4e-20  Score=189.70  Aligned_cols=210  Identities=12%  Similarity=0.152  Sum_probs=151.5

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC-
Q 012296          212 TVVVEEKMSALE----GA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-  281 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~----e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd-  281 (466)
                      ..+|++.+|+++    +.    ++.+++++|+ +++..++.+++.+||+|++++|+|......+    ...|.++..++ 
T Consensus        64 ~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~----~~~g~~~~~~~~  139 (388)
T d1gdea_          64 LLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAV----ILAGGKPVEVPT  139 (388)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHH----HHHTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHH----HHcCCEEEEeec
Confidence            456677777654    21    3345555555 9999999999999999999999999865443    34566666554 


Q ss_pred             ------CCCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----c-cc--
Q 012296          282 ------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A-LS--  345 (466)
Q Consensus       282 ------~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----~-l~--  345 (466)
                            ..|+++|+++++++ ++++++++|+||||.+++   +++|+++|+++|++||+||+|.......    + ..  
T Consensus       140 ~~~~~~~~d~~~l~~~~~~~-~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~  218 (388)
T d1gdea_         140 YEEDEFRLNVDELKKYVTDK-TRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLD  218 (388)
T ss_dssp             CGGGTTCCCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGST
T ss_pred             ccccCCCCCHHHHHHhCccC-CeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhcc
Confidence                  23799999999875 999999999999999985   6788999999999999999987543211    1 11  


Q ss_pred             --cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHh------hHHHHHHHHHHHHHH
Q 012296          346 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG------MKTLHLRVQQQNSTA  417 (466)
Q Consensus       346 --~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~------L~tl~~R~~~~~~na  417 (466)
                        .+..+++.|+||.++.+|. +.||+++++++++.+...........+......+...      .+.+....+...++.
T Consensus       219 ~~~~~~i~~~S~SK~~~~~Gl-R~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  297 (388)
T d1gdea_         219 GMFERTITVNGFSKTFAMTGW-RLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRR  297 (388)
T ss_dssp             TCGGGEEEEEESTTTTTCGGG-CCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCChhhccCccc-cEEEEEeeccchhhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhh
Confidence              1245899999999987774 5799999999999888776655554444333222222      223444445566777


Q ss_pred             HHHHHHHHcC
Q 012296          418 LRMAKILEAH  427 (466)
Q Consensus       418 ~~La~~L~~~  427 (466)
                      ..+.+.|...
T Consensus       298 ~~~~~~l~~~  307 (388)
T d1gdea_         298 KLVWKRLNEM  307 (388)
T ss_dssp             HHHHHHHHHT
T ss_pred             hhhhhhhhhc
Confidence            7788888765

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=3.7e-20  Score=185.09  Aligned_cols=224  Identities=17%  Similarity=0.208  Sum_probs=163.2

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCC-EEEEcCCCCcchHHHHHhhcccCCceEEEe
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGG-HIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~-e~~l~~sSGs-~Ai~~al~all~~Gd-~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v  280 (466)
                      ..||+++...+|+++||+++|. .+.|++++|+ +++..++.+++.+|| .|+++.|.|......    ....|.++..+
T Consensus        50 l~rYPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~~----~~~~g~~v~~~  125 (354)
T d1fg7a_          50 LNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVS----AETIGVECRTV  125 (354)
T ss_dssp             TTSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHH----HHHHTCEEEEC
T ss_pred             HhcCCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhccccccccccccccccchhh----hhccCceeecc
Confidence            4678888889999999999998 3566677777 999999999999998 588899999875533    33457777766


Q ss_pred             CC-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHH--HhcCCEEEEeCCCCCCCccc-----ccccCC
Q 012296          281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLC--HKKGAIVCIDGTFATPLNQK-----ALSLGA  348 (466)
Q Consensus       281 d~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la--~~~gillIvDea~a~~~~~~-----~l~~ga  348 (466)
                      +.     .|+++++.++.  ++++|++++|+||||.+.+.+++..++  .+++.++++|++|.......     ......
T Consensus       126 ~~~~~~~~d~~~l~~~~~--~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~~~~~~  203 (354)
T d1fg7a_         126 PTLDNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPH  203 (354)
T ss_dssp             CCCTTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTT
T ss_pred             ccccccccchhhhhhccc--ccceeeccCCCccceeEeeecccccccccccccccccccccchhhccccccchhhccccc
Confidence            42     37889988774  389999999999999999755444443  34678899999876433211     112334


Q ss_pred             cEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI---IRGMKTLHLRVQQQNSTALRMAKILE  425 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~---l~~L~tl~~R~~~~~~na~~La~~L~  425 (466)
                      .+++.|+||.++.+|. +.||+++++++++++.+.+..+..+........+   ......+..++++..+.++.+.+.|.
T Consensus       204 ~iv~~S~SK~~~laGl-RiGy~i~~~~~i~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~  282 (354)
T d1fg7a_         204 LAILRTLSKAFALAGL-RCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALK  282 (354)
T ss_dssp             EEEEEESSSTTCCGGG-CCEEEEECHHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEeCCccccCCCcc-ccccccccchhhhhhhhhcCccchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHH
Confidence            5889999999998874 5799999999999988766544433221111111   12334455666777888899999999


Q ss_pred             cCCCeEEEe
Q 012296          426 AHPKVKRVH  434 (466)
Q Consensus       426 ~~p~V~~V~  434 (466)
                      +.+.+..++
T Consensus       283 ~~~~~~~~~  291 (354)
T d1fg7a_         283 EIPCVEQVF  291 (354)
T ss_dssp             HSTTEEEEC
T ss_pred             hCCCcceeC
Confidence            999876654

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=5.1e-21  Score=193.39  Aligned_cols=216  Identities=17%  Similarity=0.208  Sum_probs=156.9

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHH----ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC
Q 012296          210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  283 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~al----l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~  283 (466)
                      ...+++|+.+|+++|++  +.++++++++++..++.++    +++||+|++.++.|+++...++ .++..|+++..++.+
T Consensus        48 ~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~-~~~~~G~~v~~v~~~  126 (391)
T d1p3wa_          48 EAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCR-QLEREGFEVTYLAPQ  126 (391)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHH-HHHHTTCEEEEECCC
T ss_pred             HHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHH-HHHHcCCEEEEeCCC
Confidence            44667899999999984  5666677778888877754    5899999999999999776554 456679999988643


Q ss_pred             -----CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc-ccccccCCcEEEECCcc
Q 012296          284 -----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK  357 (466)
Q Consensus       284 -----Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~-~~~l~~gaDivv~S~sK  357 (466)
                           |+++++++++++ |++|++++++||||.+.|+++|+++||++|+++++|++++.+.. .+....++|+++.|.+|
T Consensus       127 ~~~~~d~~~~~~~i~~~-T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k  205 (391)
T d1p3wa_         127 RNGIIDLKELEAAMRDD-TILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHK  205 (391)
T ss_dssp             TTSCCCHHHHHHHCCTT-EEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTT
T ss_pred             CCCeEcHHHHHHhCCCC-cEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCccccchhcccccccccccc
Confidence                 689999999985 99999999999999999999999999999999999999876543 45556789999999999


Q ss_pred             ccCccccceeEEEEeCHHHHHHHHHHH--------HHhCCCchHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHc
Q 012296          358 FIGGHNDVLAGSISGSGKLVTQIRNLH--------HVLGGALNPNAAYL---IIRGMKTLHLRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       358 ~lgg~gdv~gG~ivg~~eli~~l~~~~--------~~~G~~lsp~~a~l---~l~~L~tl~~R~~~~~~na~~La~~L~~  426 (466)
                      ++|++|   .|+++.+++....+....        ...|....+....+   .....+....+.++..+....+.+.|.+
T Consensus       206 ~~g~~g---~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  282 (391)
T d1p3wa_         206 IYGPKG---IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD  282 (391)
T ss_dssp             TTSCSS---CEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             ccCCCc---eEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            998776   577777665443322110        01111111111111   1122233344455566667777777877


Q ss_pred             CCCe
Q 012296          427 HPKV  430 (466)
Q Consensus       427 ~p~V  430 (466)
                      ++.+
T Consensus       283 ~~~~  286 (391)
T d1p3wa_         283 IEEV  286 (391)
T ss_dssp             STTE
T ss_pred             hcCe
Confidence            7664

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=7.8e-20  Score=186.50  Aligned_cols=175  Identities=18%  Similarity=0.197  Sum_probs=144.8

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHH----HccCCCEEEEcCCCCcchHHHHHhhcccCC
Q 012296          202 FEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKMG  274 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~a----ll~~Gd~Vlv~~~~y~~t~~~~~~~l~~~G  274 (466)
                      |..++......++.++.+|+++|+   ++.+++.+++++++.++.+    ...+||+|++.+..|++....+..+.++.|
T Consensus        58 ~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g  137 (405)
T d1jf9a_          58 HTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVG  137 (405)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcC
Confidence            334443345577889999999985   3566666777898887765    358899999999999998877777777889


Q ss_pred             ceEEEeCC-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCC
Q 012296          275 ITATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGA  348 (466)
Q Consensus       275 i~v~~vd~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~ga  348 (466)
                      +++++++.     .|++.++++++++ |++|.++..+|.+|.+.|+++|.++||++|+++++|.+++.+. ..+...+++
T Consensus       138 ~~v~~~~~~~~g~~~~~~~~~~i~~~-t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~  216 (405)
T d1jf9a_         138 AELRVIPLNPDGTLQLETLPTLFDEK-TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDC  216 (405)
T ss_dssp             CEEEEECBCTTSCBCGGGHHHHCCTT-EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTC
T ss_pred             cEEEEECCCCCCcCCHHHHHHhccCC-cEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhhcCC
Confidence            99999863     2789999999885 9999999999999999999999999999999999999988764 456667899


Q ss_pred             cEEEECCccccCccccceeEEEEeCHHHHHHH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQI  380 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg~~eli~~l  380 (466)
                      |+++.|++||+|++|   .|+++.++++.+.+
T Consensus       217 D~~~~s~hK~~Gp~G---~g~l~v~~~~~~~~  245 (405)
T d1jf9a_         217 DFYVFSGHKLYGPTG---IGILYVKEALLQEM  245 (405)
T ss_dssp             SEEEEEGGGTTSCSS---CEEEEECHHHHTTC
T ss_pred             ceeeccccccccCCC---ceeeeechhhhccc
Confidence            999999999987765   68888888876543

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=2.5e-19  Score=179.37  Aligned_cols=216  Identities=16%  Similarity=0.157  Sum_probs=161.0

Q ss_pred             CCCchh-HHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC-
Q 012296          206 RYGNPT-TVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-  281 (466)
Q Consensus       206 R~~np~-~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd-  281 (466)
                      +|+.+. ..+|++.||++++.  ++.++++++++++..++.+++.+||.|++++|+|......+.    ..|..+..+. 
T Consensus        56 ~Y~~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~----~~g~~~~~~~~  131 (368)
T d1v2da_          56 QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAF----LAGAKARLVRL  131 (368)
T ss_dssp             SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH----HTTCEEEEEEC
T ss_pred             CCCCCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccccccccccccCCcchhhhhHHH----hcCCccceecc
Confidence            344433 67899999999987  456666667799999999999999999999999998765443    2344433322 


Q ss_pred             -------CCCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcccc------cc
Q 012296          282 -------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA------LS  345 (466)
Q Consensus       282 -------~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~~------l~  345 (466)
                             ..|++.+++++++. ++++++++|+||||.+.+   +++|+++|++||+++|+|++|........      ..
T Consensus       132 ~~~~~~~~~d~~~l~~~~~~~-~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~  210 (368)
T d1v2da_         132 DLTPEGFRLDLSALEKALTPR-TRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFA  210 (368)
T ss_dssp             EEETTEEECCHHHHHTTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHC
T ss_pred             ccccccccCCHHHHHHhhccC-ceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccccccccccc
Confidence                   24899999999885 899999999999999996   77899999999999999999765332211      12


Q ss_pred             cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHh------hHHHHHHHHHHHHHHHH
Q 012296          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG------MKTLHLRVQQQNSTALR  419 (466)
Q Consensus       346 ~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~------L~tl~~R~~~~~~na~~  419 (466)
                      ....+++.|++|.++.+|. +.|++++++++++.+...+...+...+......+...      .+.+....+...++++.
T Consensus       211 ~~~~~~~~~~sk~~~~~G~-R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  289 (368)
T d1v2da_         211 PERTFTVGSAGKRLEATGY-RVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDL  289 (368)
T ss_dssp             TTTEEEEEEHHHHTTCGGG-CCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ccccceeeccccccccccc-ccccccccccccchhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhh
Confidence            2346888999999998874 5899999999999888877766655544332222221      22344455566788889


Q ss_pred             HHHHHHcC
Q 012296          420 MAKILEAH  427 (466)
Q Consensus       420 La~~L~~~  427 (466)
                      +.+.|+++
T Consensus       290 l~~~l~~~  297 (368)
T d1v2da_         290 LAGGLRAM  297 (368)
T ss_dssp             HHHHHHHT
T ss_pred             hhhhHHhc
Confidence            99999987

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.83  E-value=3.8e-19  Score=180.29  Aligned_cols=217  Identities=12%  Similarity=0.068  Sum_probs=145.3

Q ss_pred             ccccCCCchhHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccC
Q 012296          202 FEYGRYGNPTTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM  273 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~----g~----e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~  273 (466)
                      +.|... .   .+|++.+++++    |.    ++.++++++++++..++.+++++||+|++.+|.|.+.+...    ...
T Consensus        62 ~~Y~~g-~---~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~----~~~  133 (394)
T d1c7na_          62 LGYTGP-T---EEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAI----KNQ  133 (394)
T ss_dssp             CSSBCC-C---HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHH----HTT
T ss_pred             cCCCCC-C---HHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhccccccccccccccCcccchhhHH----hhh
Confidence            556542 2   25666666654    43    34555555559999999999999999999999998866444    234


Q ss_pred             CceEEEeCC--------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-
Q 012296          274 GITATVIDP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-  341 (466)
Q Consensus       274 Gi~v~~vd~--------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-  341 (466)
                      |.....++.        .|.+.++.++...++++|++++|+||||.+++   +++|+++|++++++||+||+|...... 
T Consensus       134 g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~  213 (394)
T d1c7na_         134 ERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPG  213 (394)
T ss_dssp             TCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTT
T ss_pred             hhcccccccccccccccchhhhhhhhhccccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCC
Confidence            444433321        36777887776556999999999999999986   667888999999999999998754321 


Q ss_pred             ---ccc------ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCch-HHHHHHH---HH-hhHHHH
Q 012296          342 ---KAL------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN-PNAAYLI---IR-GMKTLH  407 (466)
Q Consensus       342 ---~~l------~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~ls-p~~a~l~---l~-~L~tl~  407 (466)
                         ...      .....+++.|+||.++.+|.++|++++.++++.+.++........... ...+.++   .. ..+.+.
T Consensus       214 ~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  293 (394)
T d1c7na_         214 YEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLD  293 (394)
T ss_dssp             CCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHH
T ss_pred             ccccchhhhhcccccceeecccccccccccccccccccccChhhhhhhhhhhhhccccccccccchhhhhhhcchhhhhc
Confidence               111      113458899999999998876666666677777877776655543322 2221111   11 223344


Q ss_pred             HHHHHHHHHHHHHHHHHHc
Q 012296          408 LRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       408 ~R~~~~~~na~~La~~L~~  426 (466)
                      ...+...++.+.+.+.|+.
T Consensus       294 ~~~~~~~~~~~~~~~~l~~  312 (394)
T d1c7na_         294 GCIKVIDKNQRIVKDFFEV  312 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhhhhhhhc
Confidence            4445555666667777764

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.82  E-value=2.3e-19  Score=179.61  Aligned_cols=212  Identities=19%  Similarity=0.237  Sum_probs=168.5

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-----
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----  282 (466)
                      .|.+++||+++|+++|.+.+++++||++|+.+++.++ +++||+|+++..+|.++...+    ...|..+.++|.     
T Consensus        30 G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai----~~~g~~pv~~d~~~~~~  105 (376)
T d1mdoa_          30 GPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMI----VLLGANPVMVDVDRDTL  105 (376)
T ss_dssp             SHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHH----HHTTCEEEEECBCTTTC
T ss_pred             CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccch----hccccceeeeccccccc
Confidence            4899999999999999999999999999999999998 899999999999999877544    346778888763     


Q ss_pred             -CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccC-CcEEEEC--Cccc
Q 012296          283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG-ADLVLHS--ATKF  358 (466)
Q Consensus       283 -~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~g-aDivv~S--~sK~  358 (466)
                       .|+++|+++++++ |++|++   .|..|...|+++|.++|+++|++||+|++++.+........| .|..+.|  .+|.
T Consensus       106 ~~d~~~l~~~i~~~-tkaIi~---~h~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~  181 (376)
T d1mdoa_         106 MVTPEHIEAAITPQ-TKAIIP---VHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKN  181 (376)
T ss_dssp             CBCHHHHHHHCCTT-EEEECC---BCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSS
T ss_pred             CCCHHHHHHhcCCC-CeEEEE---eCCCCCccchhHHHHHHHhcCceEEeccchhccCeeCCeecccccCccccCCCcCC
Confidence             2899999999985 999986   457799999999999999999999999998765433222111 2345555  4699


Q ss_pred             cCccccceeEEEEeCH-HHHHHHHHHHHH------------------------hCCCchHHHHHHHHHhhHHHHHHHHHH
Q 012296          359 IGGHNDVLAGSISGSG-KLVTQIRNLHHV------------------------LGGALNPNAAYLIIRGMKTLHLRVQQQ  413 (466)
Q Consensus       359 lgg~gdv~gG~ivg~~-eli~~l~~~~~~------------------------~G~~lsp~~a~l~l~~L~tl~~R~~~~  413 (466)
                      ++.+.   ||++++++ ++.++++.++..                        ....++...+.+.+..|+.++..+++.
T Consensus       182 l~~g~---GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~~~~~~r  258 (376)
T d1mdoa_         182 ITCAE---GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARR  258 (376)
T ss_dssp             SCSSS---CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             CCCCC---CCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhhhHHHHHH
Confidence            97654   78777764 566666655421                        112356677888888899999999999


Q ss_pred             HHHHHHHHHHHHcCCCeE
Q 012296          414 NSTALRMAKILEAHPKVK  431 (466)
Q Consensus       414 ~~na~~La~~L~~~p~V~  431 (466)
                      .++++.+.+.|++.+.+.
T Consensus       259 ~~~~~~~~~~L~~~~~~~  276 (376)
T d1mdoa_         259 AAIAAQYHQAMADLPFQP  276 (376)
T ss_dssp             HHHHHHHHHHHHTSSCEE
T ss_pred             hhhhhhhhhhcccccccc
Confidence            999999999999887653

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.82  E-value=1.3e-18  Score=176.70  Aligned_cols=214  Identities=13%  Similarity=0.107  Sum_probs=143.6

Q ss_pred             HHHHHHHHHhhhCC---CcEEEeCCH-HHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC------
Q 012296          212 TVVVEEKMSALEGA---ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID------  281 (466)
Q Consensus       212 ~~~Lee~LA~l~g~---e~~l~~sSG-s~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd------  281 (466)
                      ++++.+.+.+.+|.   .+.+++++| ++++.+++.+++.+||+|++++|+|+.....    +...|.++..++      
T Consensus        76 R~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~----~~~~g~~~v~v~~~~~~~  151 (395)
T d1xi9a_          76 RKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGL----VKFYGGKPVEYRTIEEED  151 (395)
T ss_dssp             HHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHHTTCEEEEEEEEGGGT
T ss_pred             HHHHHHhhhhcccccccccccccccccchhhhhhhhhhcCCCCEEEEcCCccccchhh----hhhcCCEEEEEecccccc
Confidence            33344444444454   234444554 5999999999999999999999999875543    344566655443      


Q ss_pred             -CCCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----c---cccCCcE
Q 012296          282 -PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A---LSLGADL  350 (466)
Q Consensus       282 -~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----~---l~~gaDi  350 (466)
                       ..|++++++.+.++ ++++++++|+||||.+++   +++|+++|+++|+++|.|++|.......    +   ......+
T Consensus       152 ~~~d~~~~~~~~~~~-~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi  230 (395)
T d1xi9a_         152 WQPDIDDIRKKITDR-TKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVI  230 (395)
T ss_dssp             SEECHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEE
T ss_pred             ccchHHHHHHhhccc-ccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEE
Confidence             13789999999875 999999999999999986   5788889999999999999987543211    1   1222358


Q ss_pred             EEECCccccCccccceeEEEE-e-CHHHHHHHHHHH---HHhCCC---chHHHHHHHHH-hhHHHHHHHHHHHHHHHHHH
Q 012296          351 VLHSATKFIGGHNDVLAGSIS-G-SGKLVTQIRNLH---HVLGGA---LNPNAAYLIIR-GMKTLHLRVQQQNSTALRMA  421 (466)
Q Consensus       351 vv~S~sK~lgg~gdv~gG~iv-g-~~eli~~l~~~~---~~~G~~---lsp~~a~l~l~-~L~tl~~R~~~~~~na~~La  421 (466)
                      ++.|+||.++.+|.+ .||++ . +.+.+..+....   ......   +....+..++. ..+.+....+.+.++++.+.
T Consensus       231 ~~~S~SK~~~~~GlR-vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~  309 (395)
T d1xi9a_         231 VMNGLSKVYFATGWR-LGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIY  309 (395)
T ss_dssp             EEEESTTTTCCGGGC-CEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCcchhcccchhh-cEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            899999999988865 56654 3 333333333222   112222   22222222222 34566667777888999999


Q ss_pred             HHHHcCCCeE
Q 012296          422 KILEAHPKVK  431 (466)
Q Consensus       422 ~~L~~~p~V~  431 (466)
                      +.|++++.+.
T Consensus       310 ~~L~~~~~~~  319 (395)
T d1xi9a_         310 KRLNEIPGIS  319 (395)
T ss_dssp             HHHHTSTTEE
T ss_pred             HHHHhCCCce
Confidence            9999887653

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.81  E-value=4.8e-19  Score=179.65  Aligned_cols=216  Identities=15%  Similarity=0.190  Sum_probs=173.8

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC---
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  283 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---  283 (466)
                      ..|.++++|+++|+++|.+.+++++||++|+.++++++ +++||+|+++..+|.++...+    ...|.++.++|..   
T Consensus        32 ~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~~ai----~~~g~~p~~~d~~~~~  107 (384)
T d1b9ha_          32 GGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAA----QRLGAVTVPVDVDAAT  107 (384)
T ss_dssp             TCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECBCTTT
T ss_pred             CCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEeccccccccccc----cccccccccccccccc
Confidence            46899999999999999999999999999999999987 799999999999999877443    3568888887732   


Q ss_pred             ---CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc--ccccCCcEEEECC--c
Q 012296          284 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK--ALSLGADLVLHSA--T  356 (466)
Q Consensus       284 ---Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~--~l~~gaDivv~S~--s  356 (466)
                         |++.+++.+.++ |++|+   +.+..|...|+++|.++|+++|+++|.|.+++.+...+  ......|+.+.|+  +
T Consensus       108 ~~~d~~~~~~~i~~~-tk~i~---~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~  183 (384)
T d1b9ha_         108 YNLDPEAVAAAVTPR-TKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNG  183 (384)
T ss_dssp             CCBCHHHHHHHCCTT-EEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTT
T ss_pred             cccchhhhccccccc-ccccc---cccccccccccccchhhhhhhhhhhhhhhceecccccCCEecCcccccceeccccc
Confidence               799999999885 99986   46777999999999999999999999999987654322  2222246666665  7


Q ss_pred             cccCccccceeEEEEeC-HHHHHHHHHHHHH---------------hC--CCchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 012296          357 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHV---------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNSTAL  418 (466)
Q Consensus       357 K~lgg~gdv~gG~ivg~-~eli~~l~~~~~~---------------~G--~~lsp~~a~l~l~~L~tl~~R~~~~~~na~  418 (466)
                      |.++.+.   ||+++++ +++.++++.++..               .|  ..++.+.|.+++..|+.++.++++..++++
T Consensus       184 K~i~~g~---GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~ld~~~~~R~~~~~  260 (384)
T d1b9ha_         184 KLMTAGE---GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWT  260 (384)
T ss_dssp             SSSCSSS---CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             ccccccc---cchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhhcccchhhhhhhhh
Confidence            9987653   6777665 5677777665532               12  236788888889999999999999999999


Q ss_pred             HHHHHHHcCCCeEEEe
Q 012296          419 RMAKILEAHPKVKRVH  434 (466)
Q Consensus       419 ~La~~L~~~p~V~~V~  434 (466)
                      .+.+.|++.+.+....
T Consensus       261 ~y~~~L~~~~~i~~~~  276 (384)
T d1b9ha_         261 LLSRLLGAIDGVVPQG  276 (384)
T ss_dssp             HHHHHHHTSTTCEECC
T ss_pred             hhhhhhhccccccccc
Confidence            9999999988875433

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.81  E-value=1.6e-18  Score=176.96  Aligned_cols=210  Identities=17%  Similarity=0.195  Sum_probs=148.1

Q ss_pred             HHHHHHHHHhhhCC----CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC----
Q 012296          212 TVVVEEKMSALEGA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (466)
Q Consensus       212 ~~~Lee~LA~l~g~----e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----  282 (466)
                      ++++.+.+++..|.    .+.|++++|+ +|+..++++++++||.|++++|.|+.....+.    ..|.+++.++.    
T Consensus        72 ReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~----~~g~~~~~v~~~~~~  147 (418)
T d2r5ea1          72 VQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVK----AAGGIPRFIPLKPNK  147 (418)
T ss_dssp             HHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH----HTTCEEEEEECEESC
T ss_pred             HHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhccccccceeccccccchhhHHHH----HcCCeEEEEEecccc
Confidence            34444444444453    2456667776 99999999999999999999999998664443    34555544421    


Q ss_pred             -----------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc-----c
Q 012296          283 -----------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-----A  343 (466)
Q Consensus       283 -----------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~-----~  343 (466)
                                 .+.+++.+..... ++++++++|+||||.+++   +++|+++|+++|+++|.|++|.......     .
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~  226 (418)
T d2r5ea1         148 TGGTISSADWVLDNNELEALFNEK-TKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRI  226 (418)
T ss_dssp             CSSCEEGGGEECCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCG
T ss_pred             cccchhhhhhhhhHHHHhhhhhcc-ccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccc
Confidence                       2577888877664 999999999999999986   5678889999999999999986533211     1


Q ss_pred             cc----cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh-----------HHHHH
Q 012296          344 LS----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM-----------KTLHL  408 (466)
Q Consensus       344 l~----~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L-----------~tl~~  408 (466)
                      ..    ....+++.|+||.++.+|. +.||+++++++++.+.+.........+......+...+           +.+..
T Consensus       227 ~~~~~~~~~~i~~~S~SK~~~~pGl-RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~  305 (418)
T d2r5ea1         227 CTLPGMWERTITIGSAGKTFSLTGW-KIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNS  305 (418)
T ss_dssp             GGSTTTGGGEEEEEEHHHHTTCGGG-CCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHH
T ss_pred             cccccccceeeeeecCCccccCCCc-ccccccccchhhhhhhhcccccccccccchhhhccccccccccccccchhhHHH
Confidence            11    1234889999999998874 58999999999999887776544433333222222211           23444


Q ss_pred             HHHHHHHHHHHHHHHHHcC
Q 012296          409 RVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       409 R~~~~~~na~~La~~L~~~  427 (466)
                      ..+.+..+++.+.+.|++.
T Consensus       306 ~~~~~~~~r~~l~~~L~~~  324 (418)
T d2r5ea1         306 ISGELMAKRDYMASFLAEV  324 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhHHhhHhhc
Confidence            5566677888999999986

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.81  E-value=2e-18  Score=176.03  Aligned_cols=176  Identities=17%  Similarity=0.214  Sum_probs=143.5

Q ss_pred             CccccCCCchhHHHHHHHHHhhhCCC--c-EEEeCCHHHHHHHHHHH----HccCCCEEEEcCCCCcchHHHHHhhcccC
Q 012296          201 SFEYGRYGNPTTVVVEEKMSALEGAE--S-TVIMASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKM  273 (466)
Q Consensus       201 ~~~Y~R~~np~~~~Lee~LA~l~g~e--~-~l~~sSGs~Ai~~al~a----ll~~Gd~Vlv~~~~y~~t~~~~~~~l~~~  273 (466)
                      .|.+++......++.++.+++++|++  + .++++++++++++++..    .+++||+|++.+..|++....+....++.
T Consensus        57 ~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~  136 (408)
T d1t3ia_          57 AHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKT  136 (408)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhcc
Confidence            35555555567788899999999983  4 44445566788777765    35789999999999999877776667778


Q ss_pred             CceEEEeCC-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccC
Q 012296          274 GITATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLG  347 (466)
Q Consensus       274 Gi~v~~vd~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~g  347 (466)
                      |+++.+++.     .+.+.++++++++ |++|.+...+|.+|.+.|+++|.++|+++|+++++|.+++.+. ..+...++
T Consensus       137 g~~v~~~~~~~~~~~~~~~l~~~~~~~-t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~  215 (408)
T d1t3ia_         137 GAVLKFVQLDEQESFDLEHFKTLLSEK-TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLID  215 (408)
T ss_dssp             CCEEEEECBCTTSSBCHHHHHHHCCTT-EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHT
T ss_pred             CceEeeeeccccccccHHHhhhccCCC-ceEEEEecccccccccCcHHHHhhhhhccCceeeeccceecccccccccccC
Confidence            988888863     2689999999885 9999999999999999999999999999999999999987654 35556789


Q ss_pred             CcEEEECCccccCccccceeEEEEeCHHHHHHH
Q 012296          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI  380 (466)
Q Consensus       348 aDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l  380 (466)
                      +|+++.|++||+|++|   .|+++.+++....+
T Consensus       216 ~D~~~~s~hK~~gp~G---~g~l~v~~~~~~~~  245 (408)
T d1t3ia_         216 CDWLVASGHKMCAPTG---IGFLYGKEEILEAM  245 (408)
T ss_dssp             CSEEEEEGGGTTSCTT---CEEEEECHHHHHHS
T ss_pred             CceEEeccccccCCCC---ccccccchhhhhcC
Confidence            9999999999987765   68888888876543

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=5.9e-18  Score=169.66  Aligned_cols=210  Identities=15%  Similarity=0.167  Sum_probs=148.2

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC--
Q 012296          212 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--  281 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~----e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd--  281 (466)
                      ..+|++.+++++    +.    ++.+++++|++|+..++.+++++||.|++++|.|+.......    ..+.....+.  
T Consensus        67 ~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~----~~~~~~~~~~~~  142 (375)
T d1o4sa_          67 IYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQII----LAGGTVNVVETF  142 (375)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH----HTTCEEEEEECC
T ss_pred             CHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhh----cccccccccccc
Confidence            345666666553    32    345555555699999999999999999999999998654332    3344444332  


Q ss_pred             -----CCCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----c----ccc
Q 012296          282 -----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----K----ALS  345 (466)
Q Consensus       282 -----~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----~----~l~  345 (466)
                           ..|.+.++....++ ++++++++|+||||.+.+   +++|+++|++|+++||.||+|......    .    ...
T Consensus       143 ~~~~~~~~~~~~~~~~~~~-~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  221 (375)
T d1o4sa_         143 MSKNFQPSLEEVEGLLVGK-TKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEG  221 (375)
T ss_dssp             GGGTTCCCHHHHHHTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSS
T ss_pred             ccccccchhHHHHHhhccC-ccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCC
Confidence                 23678888777764 999999999999999985   677888899999999999997653321    1    112


Q ss_pred             cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHH
Q 012296          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-TLHLRVQQQNSTALRMAKIL  424 (466)
Q Consensus       346 ~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~-tl~~R~~~~~~na~~La~~L  424 (466)
                      .+..+++.|+||.++.+| .+.||+++++++++.+...+..................++ ......+...++++.+.+.|
T Consensus       222 ~~~~i~~~S~SK~~~l~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l  300 (375)
T d1o4sa_         222 FDRIVYINGFSKSHSMTG-WRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERL  300 (375)
T ss_dssp             STTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeechhhccCCc-cccccccccccchhhhhhhhccccccccccchhhhhhhcccchhhhHHHHHHHHHHHHHHH
Confidence            345699999999999777 4689999999999888877766655444443333333222 22333445666777888888


Q ss_pred             HcC
Q 012296          425 EAH  427 (466)
Q Consensus       425 ~~~  427 (466)
                      +++
T Consensus       301 ~~~  303 (375)
T d1o4sa_         301 KKM  303 (375)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            775

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.2e-17  Score=169.50  Aligned_cols=213  Identities=11%  Similarity=0.116  Sum_probs=170.0

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHH
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~L  288 (466)
                      .+...+||+.||+++|.+.+++++||+.|+..++.++..++|.|++....|.+....    .+..+.++..++..|++++
T Consensus        82 ~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g----~~~~~~~~~~~~hnd~~~l  157 (383)
T d1bs0a_          82 SVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEA----ASLSPSQLRRFAHNDVTHL  157 (383)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHTSSSEEEEECTTCHHHH
T ss_pred             chHHHHHHHHHHHhcCCCceEEecccchhhHHHHHhhcCCCceEEeeccccHHHhhc----cccCCCcceEecchHHHHH
Confidence            577899999999999999999999999999999999999999999999999876543    3345677888899999999


Q ss_pred             HHhhcCC--CceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc-------ccccCCcEEEECCcccc
Q 012296          289 EAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK-------ALSLGADLVLHSATKFI  359 (466)
Q Consensus       289 e~ai~~~--~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~-------~l~~gaDivv~S~sK~l  359 (466)
                      ++.+...  +.++|++|.+.+++|.+.|+++|.++|++||+++++||+++.+....       ......|+++.+++|.+
T Consensus       158 e~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~  237 (383)
T d1bs0a_         158 ARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGF  237 (383)
T ss_dssp             HHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTT
T ss_pred             HHHhcccCCCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccc
Confidence            9988542  36799999999999999999999999999999999999988764422       12234678999999999


Q ss_pred             CccccceeEEEEeCHHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHcCCC
Q 012296          360 GGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAKILEAHPK  429 (466)
Q Consensus       360 gg~gdv~gG~ivg~~eli~~l~~~~~--~~G~~lsp~~a~l~l~~L~t-----l~~R~~~~~~na~~La~~L~~~p~  429 (466)
                      +..    ||++.++.++++.++....  .++..++|..+..++..++-     ...+.++..++...+.+.|++.+.
T Consensus       238 g~~----Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~  310 (383)
T d1bs0a_         238 GVS----GAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPF  310 (383)
T ss_dssp             SSC----CEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             ccc----ccccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence            976    5899999999988876543  34445555544444444332     345666777888889999987653

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1e-17  Score=168.95  Aligned_cols=231  Identities=15%  Similarity=0.134  Sum_probs=158.1

Q ss_pred             HHHHHHHHhh----hCC----CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC--
Q 012296          213 VVVEEKMSAL----EGA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--  281 (466)
Q Consensus       213 ~~Lee~LA~l----~g~----e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd--  281 (466)
                      .+|++.+|++    +|.    ++.+++++|+ +++.+++++++++||.|++++|.|......+    ...|..+..+.  
T Consensus        66 ~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~~~~~  141 (382)
T d1u08a_          66 QALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAI----ALSGGIVKRMALQ  141 (382)
T ss_dssp             HHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhcccccceEEEecccccchhhhh----hhccccceecccc
Confidence            3555555554    453    3435555555 8999999999999999999999999865433    33454444332  


Q ss_pred             ----CCCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----ccc----c
Q 012296          282 ----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL----S  345 (466)
Q Consensus       282 ----~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----~~l----~  345 (466)
                          ..|++++++.++++ ++++++++|+||||.+++   +++|+++|.+++++++.|+.|......     ...    .
T Consensus       142 ~~~~~~d~~~l~~~~~~~-~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~  220 (382)
T d1u08a_         142 PPHFRVDWQEFAALLSER-TRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQL  220 (382)
T ss_dssp             TTTCCCCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHH
T ss_pred             cccccCCHHHHhhhhccC-ccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccc
Confidence                23789999998885 999999999999999996   566777788899999999996543221     111    1


Q ss_pred             cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHH----hhHHHHHHHHHHHHHHHHHH
Q 012296          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR----GMKTLHLRVQQQNSTALRMA  421 (466)
Q Consensus       346 ~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~----~L~tl~~R~~~~~~na~~La  421 (466)
                      ....+++.|+||.++.+|. +.||+++++++++.+.........+.+.....++..    +.+.+....+.+.++++.+.
T Consensus       221 ~~~~i~~~s~SK~~~~pG~-RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~  299 (382)
T d1u08a_         221 RERAVAVSSFGKTYHMTGW-KVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILV  299 (382)
T ss_dssp             HTTEEEEEEHHHHTTCGGG-CCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHH
T ss_pred             cCcEEEEeeccccccCCcc-cchhhhccchhHHHHHhhhcccccccccccccccccccccchHHHHHHHHHHHhhhhhhh
Confidence            2245999999999998874 589999999999988877765554444433332222    33445555566677778888


Q ss_pred             HHHHcCCCe----------EEEeCCCCCCCchHHHHHhh
Q 012296          422 KILEAHPKV----------KRVHYPGLKSHPEHHIATQQ  450 (466)
Q Consensus       422 ~~L~~~p~V----------~~V~yPgl~s~p~~~~~~~~  450 (466)
                      +.++.. ++          -|+..|.+......+++++.
T Consensus       300 ~~~~~~-g~~~~~p~gg~~~~~~~~~~~~~d~~e~~~~l  337 (382)
T d1u08a_         300 NALNES-RLEILPCEGTYFLLVDYSAVSTLDDVEFCQWL  337 (382)
T ss_dssp             HHTTSS-SCEECCCCBSSEEEEECTTTCCSCHHHHHHHH
T ss_pred             hhhccC-CcEEecCCceEEEEEecCCCCCCCHHHHHHHH
Confidence            877653 22          24555655544555555443

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=1.1e-18  Score=173.17  Aligned_cols=214  Identities=15%  Similarity=0.122  Sum_probs=152.8

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC----CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEE
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~----e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~  278 (466)
                      +++|+++...+|++.+|++++.    .+.|++++|+ +++.++    +.+||+|++.+|+|......    +...|+++.
T Consensus        50 ~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l----~~~~d~v~i~~P~y~~~~~~----~~~~g~~~v  121 (334)
T d2f8ja1          50 LRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVM----MLMFDRSVFFPPTYSCYRIF----AKAVGAKFL  121 (334)
T ss_dssp             GGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHH----HHHSSEEEECSSCCHHHHHH----HHHHTCCEE
T ss_pred             hcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHHHHH----hhhccccccccccccccccc----hhccCCccc
Confidence            3344555567899999998763    3457777887 666654    45689999999999886533    345688888


Q ss_pred             EeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc----ccccccCCcEEEEC
Q 012296          279 VIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----QKALSLGADLVLHS  354 (466)
Q Consensus       279 ~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~----~~~l~~gaDivv~S  354 (466)
                      .++..+-....++..+ +++++++++|+||||.+.+.+.|.+++ ++++++|+|+.|.....    .........+++.|
T Consensus       122 ~v~~~~~~~~~~~~~~-~~~~l~l~nP~NPtG~~~s~~~l~~~~-~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S  199 (334)
T d2f8ja1         122 EVPLTKDLRIPEVNVG-EGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRT  199 (334)
T ss_dssp             ECCCCTTSCCCCCCCC-TTEEEEEESSCTTTCCCCCHHHHHHHH-TTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEE
T ss_pred             cccccccccccccccc-cceEEEecccccccceeecHHHhhccc-cceeEEeecccchhhcccccccccccCceEEEEec
Confidence            8875421122222333 489999999999999999998887764 67899999999754222    11222334589999


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL-NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~l-sp~~a~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p  428 (466)
                      +||.++.+|. +.|+++++++++++++..+...+.+. ....+...+...+.+..+++...++++.+.+.|++++
T Consensus       200 ~SK~~~~~G~-R~G~~~~~~~~i~~l~~~~~~~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g  273 (334)
T d2f8ja1         200 FSKAFSLAAQ-RVGYVVASEKFIDAYNRVRLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMG  273 (334)
T ss_dssp             STTTSSCTTT-CEEEEEECHHHHHHHHHHSCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             Cccccchhhh-hhhhcccchHHHHHHHHhhcccccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHCC
Confidence            9999998874 58999999999999988765544322 2222334455566777778888899999999999874

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=4.1e-18  Score=171.65  Aligned_cols=212  Identities=14%  Similarity=0.171  Sum_probs=142.8

Q ss_pred             HHHHHHHHHhh----hCC---CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC
Q 012296          212 TVVVEEKMSAL----EGA---ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  283 (466)
Q Consensus       212 ~~~Lee~LA~l----~g~---e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~  283 (466)
                      ..+|++.++++    .|.   .+.+++++|+ +++..++.+++.+||.|++++|.|+.....+    ...|..+..++..
T Consensus        66 ~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~----~~~g~~~~~~~~~  141 (389)
T d2gb3a1          66 IWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFA----KIAGVKLIPVTRR  141 (389)
T ss_dssp             CHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHH----HHHTCEEEEEECC
T ss_pred             CHHHHHHHHHHHHHhcCCCcccceEEecccccccccccccccccCCCeEEEeCCCCccccccc----cccCccccccccc
Confidence            34555555554    343   2345566666 8999999999999999999999998765443    3345555444321


Q ss_pred             ------CHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----c--cccCC
Q 012296          284 ------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A--LSLGA  348 (466)
Q Consensus       284 ------Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----~--l~~ga  348 (466)
                            +.+.+...+.+ +++++++++|+||||.+.+   +++|.++|+++|+++|+||+|.......    .  .....
T Consensus       142 ~~~~~~~~~~~~~~~~~-~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~  220 (389)
T d2gb3a1         142 MEEGFAIPQNLESFINE-RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDK  220 (389)
T ss_dssp             GGGTSCCCTTGGGGCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTT
T ss_pred             cccccchhhhhhhhccc-CccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEecccccccccccccccccccccc
Confidence                  33455555666 4999999999999999986   7789999999999999999986543221    1  12234


Q ss_pred             cEEEECCccccCccccceeEEEEeCHH-HHHHHHHHHHHhCCCchHHHHH---HHHHh-hHHHHHHHHHHHHHHHHHHHH
Q 012296          349 DLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAY---LIIRG-MKTLHLRVQQQNSTALRMAKI  423 (466)
Q Consensus       349 Divv~S~sK~lgg~gdv~gG~ivg~~e-li~~l~~~~~~~G~~lsp~~a~---l~l~~-L~tl~~R~~~~~~na~~La~~  423 (466)
                      .+++.|++|.++.+|. +.||++++++ +.+.+...... ....+.....   .++.. -+.+....+...++++.+.+.
T Consensus       221 ~~v~~s~sK~~~~~Gl-RiG~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  298 (389)
T d2gb3a1         221 VVVIDSVSKKFSACGA-RVGCLITRNEELISHAMKLAQG-RLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKK  298 (389)
T ss_dssp             EEEEEESTTTTTCGGG-CCEEEECSCHHHHHHHHHHHHH-SCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCccc-ceeeeeccchhHHHHHhhhhhc-cccccccccccccccccccchhcccccccccccchhhhhh
Confidence            6889999999999985 4788888665 44444443332 3222332222   22222 234455556677888999999


Q ss_pred             HHcCCCe
Q 012296          424 LEAHPKV  430 (466)
Q Consensus       424 L~~~p~V  430 (466)
                      |++++.+
T Consensus       299 L~~~~~~  305 (389)
T d2gb3a1         299 LEEHGLK  305 (389)
T ss_dssp             HHHTTCC
T ss_pred             hhhhccc
Confidence            9988653

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=7.8e-18  Score=167.91  Aligned_cols=220  Identities=18%  Similarity=0.133  Sum_probs=140.9

Q ss_pred             ccccCCCc-hhHHHHHHHHHhhhCC----CcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCce
Q 012296          202 FEYGRYGN-PTTVVVEEKMSALEGA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (466)
Q Consensus       202 ~~Y~R~~n-p~~~~Lee~LA~l~g~----e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~  276 (466)
                      +.|..... +.++.+.+.+++.+|.    +++++++++++++..++.+++++||+|++++|.|+.....+    ...|..
T Consensus        30 ~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~~g~~  105 (361)
T d1d2fa_          30 FGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAI----EGNQRT  105 (361)
T ss_dssp             CCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHH----HHTTCE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhccccccccccccccccchhHHH----Hhhcce
Confidence            45655433 3333344444444453    45555566669999999999999999999999998865443    334544


Q ss_pred             EEEeC----C----CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc----
Q 012296          277 ATVID----P----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----  341 (466)
Q Consensus       277 v~~vd----~----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~----  341 (466)
                      +..+.    .    .|++.+++.+.+.++++|++++|+||||.+++   +++|+++|+++|+++|+|++|......    
T Consensus       106 ~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~  185 (361)
T d1d2fa_         106 VMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPH  185 (361)
T ss_dssp             EEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCC
T ss_pred             EEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhhhhhhhhhhheeeeecccccccccccccc
Confidence            44332    1    37899999997767999999999999999985   778999999999999999998754321    


Q ss_pred             ---cccccCCcEEEECCccccCccccceeEEEEeC-HHHHHH-HHHHHHHhCC-CchHHHHHHHHHhh----HHHHHHHH
Q 012296          342 ---KALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQ-IRNLHHVLGG-ALNPNAAYLIIRGM----KTLHLRVQ  411 (466)
Q Consensus       342 ---~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~-l~~~~~~~G~-~lsp~~a~l~l~~L----~tl~~R~~  411 (466)
                         .....+..+++.|+||.++.+|. +.|+++.. +...+. +.......+. ..........+..+    +......+
T Consensus       186 ~~~~~~~~~~~v~~~s~SK~~~~~g~-R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  264 (361)
T d1d2fa_         186 IPWSNVARGDWALLTSGSKSFNIPAL-TGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRI  264 (361)
T ss_dssp             CCGGGTCCSSEEEEECSHHHHTCGGG-CCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccc-cceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhccchhhhcccc
Confidence               11122345889999999987774 46776554 444333 3333333332 22222222222222    23334444


Q ss_pred             HHHHHHHHHHHHHHc
Q 012296          412 QQNSTALRMAKILEA  426 (466)
Q Consensus       412 ~~~~na~~La~~L~~  426 (466)
                      ...++++.+.+.+.+
T Consensus       265 ~~~~r~~~~~~~~~~  279 (361)
T d1d2fa_         265 YLKDNLTYIADKMNA  279 (361)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHhhh
Confidence            556666677766654

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.79  E-value=1.2e-17  Score=169.90  Aligned_cols=200  Identities=14%  Similarity=0.142  Sum_probs=140.8

Q ss_pred             cEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-------CCHHHHHHhhcCCCce
Q 012296          227 STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNNNNVS  298 (466)
Q Consensus       227 ~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-------~Dle~Le~ai~~~~tk  298 (466)
                      +.|++++|+ +|+..++.+++++||+|++++|+|+.....    +...|+++..++.       .+++++++++++. ++
T Consensus       102 ~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~----~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~-~~  176 (412)
T d1bw0a_         102 DNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETV----CKAYGIGMHFYNCRPENDWEADLDEIRRLKDDK-TK  176 (412)
T ss_dssp             GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHH----HHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTT-EE
T ss_pred             CeEEEecccccchhhhhhhhhccccceeeeeccchhhhhh----hhccCccccccccccccccchhhHHHHhhhhcc-cc
Confidence            345555555 999999999999999999999999876533    4456777766542       3688999988875 99


Q ss_pred             EEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc--c---c-------ccCCcEEEECCccccCccc
Q 012296          299 LFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK--A---L-------SLGADLVLHSATKFIGGHN  363 (466)
Q Consensus       299 lV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~--~---l-------~~gaDivv~S~sK~lgg~g  363 (466)
                      ++++++|+||||.+.+   +++|+++|++++++||+||+|.......  +   .       ....-+++.|+||.++.+|
T Consensus       177 ~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G  256 (412)
T d1bw0a_         177 LLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPG  256 (412)
T ss_dssp             EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGG
T ss_pred             ccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCC
Confidence            9999999999999985   6788888999999999999987533211  0   0       0112378889999999998


Q ss_pred             cceeEEEEeCH------HHHHHHHHHHHHhCCCchHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 012296          364 DVLAGSISGSG------KLVTQIRNLHHVLGGALNPNAAYLIIR----GMKTLHLRVQQQNSTALRMAKILEAHPKVKR  432 (466)
Q Consensus       364 dv~gG~ivg~~------eli~~l~~~~~~~G~~lsp~~a~l~l~----~L~tl~~R~~~~~~na~~La~~L~~~p~V~~  432 (466)
                      .+ .||+++++      +++...........+......+.++..    ..+.+....+++.++++.+.+.|.+++++..
T Consensus       257 ~R-vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~  334 (412)
T d1bw0a_         257 WR-LGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAP  334 (412)
T ss_dssp             GC-CEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred             CC-cccccccchhhcchhhhhhhccccccccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCcee
Confidence            64 67776643      344444444444433333333222221    1234556667778889999999988877653

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.78  E-value=5.9e-18  Score=173.65  Aligned_cols=215  Identities=15%  Similarity=0.194  Sum_probs=143.6

Q ss_pred             HHHHHHHHHhhh----C----C-CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          212 TVVVEEKMSALE----G----A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       212 ~~~Lee~LA~l~----g----~-e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ..+|++.||+++    |    . .+.|++++|+ +|+..++.+++.+||+|++++|.|+.....+.   ...|+++..++
T Consensus        86 ~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~---~~~g~~~v~v~  162 (431)
T d1m7ya_          86 LPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLK---WRTGVEIVPIH  162 (431)
T ss_dssp             CHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTT---TTTCCEEEEEE
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH---HhcCceecccc
Confidence            346777776654    3    1 2455666665 99999999999999999999999987654331   23467666654


Q ss_pred             C-------CCHHHHHHhhcC-----CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-----
Q 012296          282 P-------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----  341 (466)
Q Consensus       282 ~-------~Dle~Le~ai~~-----~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-----  341 (466)
                      .       .|++.+++++++     .+++++++++|+||||.+.+   +++|+++|+++|+++|+||+|+...+.     
T Consensus       163 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~  242 (431)
T d1m7ya_         163 CTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFI  242 (431)
T ss_dssp             CCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCC
T ss_pred             ccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCC
Confidence            2       367777766642     24899999999999999986   778899999999999999998643221     


Q ss_pred             cccc-------------cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHH--HHHhh---
Q 012296          342 KALS-------------LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL--IIRGM---  403 (466)
Q Consensus       342 ~~l~-------------~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l--~l~~L---  403 (466)
                      ....             ....+++.|+||.++.+|. +.|+++++++++..............++..+.+  .+...   
T Consensus       243 s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~-RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~  321 (431)
T d1m7ya_         243 SVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGF-RVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLT  321 (431)
T ss_dssp             CHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGG-CEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHH
T ss_pred             CHHHHhhhcccccccccCceEEEEecCcccccCCCC-ccceeccchhhhHHHHHHHhccccccccccchhhhhhccchhh
Confidence            1110             1124889999999998874 578999988877655444444444333322211  11111   


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 012296          404 -KTLHLRVQQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       404 -~tl~~R~~~~~~na~~La~~L~~~p~V~  431 (466)
                       +.+....+++.++.+.+.+.|+++ ++.
T Consensus       322 ~~~~~~~~~~~~~~~~~l~~~L~~~-gi~  349 (431)
T d1m7ya_         322 KNYIAENHKRLKQRQKKLVSGLQKS-GIS  349 (431)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT-TCE
T ss_pred             hhhhhhhhhhhhhhhhhhhhhhhcC-CcE
Confidence             223334455667778888888863 443

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.6e-17  Score=169.58  Aligned_cols=210  Identities=16%  Similarity=0.214  Sum_probs=148.4

Q ss_pred             HHHHHHHHHhh----hCCC----cEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC-
Q 012296          212 TVVVEEKMSAL----EGAE----STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-  281 (466)
Q Consensus       212 ~~~Lee~LA~l----~g~e----~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd-  281 (466)
                      ...|++.|+++    +|..    +.|++++|+ +|+.+++.+++.+||.|++++|.|+.....+.    ..|.+...++ 
T Consensus        66 ~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~----~~g~~~v~~~~  141 (418)
T d1w7la_          66 YPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTM----MAGGRPVFVSL  141 (418)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH----HTTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhccCCceeeccccccchhHHHHH----HcCCEeecccc
Confidence            33455555554    4542    346667776 99999999999999999999999998664442    3344433322 


Q ss_pred             ----------------CCCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCcc-
Q 012296          282 ----------------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-  341 (466)
Q Consensus       282 ----------------~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~-  341 (466)
                                      ..|.+++....++. +++|++++|+||||.+++   +++|+++|+++++++|+|++|....+. 
T Consensus       142 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~  220 (418)
T d1w7la_         142 KPGPIQNGELGSSSNWQLDPMELAGKFTSR-TKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDG  220 (418)
T ss_dssp             EECC---CCSEEGGGEECCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT
T ss_pred             ccccccccccccccCcccchhhhhcccccc-ccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCC
Confidence                            12566777777764 899999999999999985   678899999999999999998654321 


Q ss_pred             ----ccccc----CCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh----------
Q 012296          342 ----KALSL----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----------  403 (466)
Q Consensus       342 ----~~l~~----gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L----------  403 (466)
                          ....+    ...+++.|+||.++.+| .+.||+++++++++.+++.+.......+......+...+          
T Consensus       221 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG-~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  299 (418)
T d1w7la_         221 HQHISIASLPGMWERTLTIGSAGKTFSATG-WKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQP  299 (418)
T ss_dssp             CCCCCGGGSTTTGGGEEEEEEHHHHTTCGG-GCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTST
T ss_pred             CCCCCHHHccccccccceecccCccccCCC-CcccccccchhhhhhhccccccccccccchhhHHHHHHhhhcccccccc
Confidence                11111    23589999999999887 468999999999999988776555444443322222222          


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          404 -KTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       404 -~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                       +.+....+...++++.+.+.|++.
T Consensus       300 ~~~~~~~~~~~~~~r~~l~~~L~~~  324 (418)
T d1w7la_         300 SSYFVQFPQAMQRCRDHMIRSLQSV  324 (418)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccchhhhhhhhhhhhhhhhhc
Confidence             233444566777888899999876

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.77  E-value=3e-17  Score=168.20  Aligned_cols=210  Identities=16%  Similarity=0.182  Sum_probs=138.6

Q ss_pred             HHHHHHHHhhh----CC-----CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC
Q 012296          213 VVVEEKMSALE----GA-----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (466)
Q Consensus       213 ~~Lee~LA~l~----g~-----e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  282 (466)
                      .+|++.||+++    |.     .+.+++++|+ +++..++.+++.+||+|++++|+|+.....+   ....|+++..++.
T Consensus        86 ~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~---~~~~g~~~v~v~~  162 (428)
T d1iaya_          86 PEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDL---RWRTGVQLIPIHC  162 (428)
T ss_dssp             HHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHT---TTTTCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHH---HHhcCCeEEEeec
Confidence            46677766653    31     2345556665 9999999999999999999999998865332   2234788777753


Q ss_pred             -------CCHHHHHHhhc-----CCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc-----
Q 012296          283 -------ADMEGLEAALN-----NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-----  342 (466)
Q Consensus       283 -------~Dle~Le~ai~-----~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~-----  342 (466)
                             .|+++++.+++     ..++++|++++|+||||.+++   +++|+++|++||++||+|++|.......     
T Consensus       163 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s  242 (428)
T d1iaya_         163 ESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVS  242 (428)
T ss_dssp             CTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCC
T ss_pred             ccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccc
Confidence                   25666654431     224899999999999999986   6789999999999999999986432211     


Q ss_pred             c-----------cccCCcEEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCCchHHH-HHHH-HH---hhH-
Q 012296          343 A-----------LSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNA-AYLI-IR---GMK-  404 (466)
Q Consensus       343 ~-----------l~~gaDivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~lsp~~-a~l~-l~---~L~-  404 (466)
                      .           ......+++.|+||.++.+|. +.|++++ ++++.+.++..... +....+.. +..+ +.   .++ 
T Consensus       243 ~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~Gl-RiG~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~a~l~~~~~~~~  320 (428)
T d1iaya_         243 IAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGF-RVGIIYSFNDDVVNCARKMSSF-GLVSTQTQYFLAAMLSDEKFVDN  320 (428)
T ss_dssp             HHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGG-CEEEEEESCHHHHHHHHHHHTT-SCCCHHHHHHHHHHTTCHHHHHH
T ss_pred             cccccchhhccccccceEEEEecCCCcccCCCc-ccccccccccchhhhhhhhhcc-cccccccccchhhhhhhhccccc
Confidence            0           011234889999999988874 5778777 45666666555433 33222222 1111 11   111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcC
Q 012296          405 TLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       405 tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      .+....+...++++.+.+.|+..
T Consensus       321 ~~~~~~~~l~~r~~~~~~~L~~~  343 (428)
T d1iaya_         321 FLRESAMRLGKRHKHFTNGLEVV  343 (428)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccchhHHHHHHHHHhC
Confidence            23444455667778888888764

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.77  E-value=1.5e-17  Score=166.85  Aligned_cols=208  Identities=13%  Similarity=0.107  Sum_probs=164.9

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC----
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----  283 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~----  283 (466)
                      .|.++.||+.+++++|.+.+++++||++|+.+++.++ +++||+|+++..+|.++...+    ...|.+++++|.+    
T Consensus        20 G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~----~~~g~~pv~~Di~~~~~   95 (374)
T d1o69a_          20 GEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPI----CYLKAKPVFIDCDETYN   95 (374)
T ss_dssp             THHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHH----HHTTCEEEEECBCTTSS
T ss_pred             CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHHHH----hhccceeEecccccccc
Confidence            4889999999999999999999999999999999998 889999999999999876443    3468899998854    


Q ss_pred             --CH--HHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccccccc--CCcEEEECCc-
Q 012296          284 --DM--EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSL--GADLVLHSAT-  356 (466)
Q Consensus       284 --Dl--e~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~--gaDivv~S~s-  356 (466)
                        +.  +.++..+++ ++++|++   .+..|...|+++|.++|+++|++||.|.+++.+...+....  -.|+.++|++ 
T Consensus        96 ~~~~~~~~~~~~~~~-~~~aii~---~~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~gd~~~fSf~~  171 (374)
T d1o69a_          96 IDVDLLKLAIKECEK-KPKALIL---THLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNG  171 (374)
T ss_dssp             BCHHHHHHHHHHCSS-CCCEEEE---ECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCT
T ss_pred             cccccccccchhccc-ccccccc---cccccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCCCceEEEeccC
Confidence              12  233345555 3888886   45569999999999999999999999999776544332222  2499999985 


Q ss_pred             -cccCccccceeEEEEe-CHHHHHHHHHHHHH------------hC--CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 012296          357 -KFIGGHNDVLAGSISG-SGKLVTQIRNLHHV------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNSTALRM  420 (466)
Q Consensus       357 -K~lgg~gdv~gG~ivg-~~eli~~l~~~~~~------------~G--~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~L  420 (466)
                       |.++..+   ||+++. ++++.++++.++..            .|  ..++.+.|.+.+..|+.+..++++..++++.+
T Consensus       172 ~K~l~tge---GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~r~~i~~~y  248 (374)
T d1o69a_         172 NKIITTSG---GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWY  248 (374)
T ss_dssp             TSSSCCSS---CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             cccccccc---ceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHHhhhhhhcchhHHHHHHH
Confidence             8887765   566555 57888888766532            12  23678888898999999999999999999999


Q ss_pred             HHHHHcC
Q 012296          421 AKILEAH  427 (466)
Q Consensus       421 a~~L~~~  427 (466)
                      .+.|.+.
T Consensus       249 ~~~L~~~  255 (374)
T d1o69a_         249 KEFLGEY  255 (374)
T ss_dssp             HHHHTTT
T ss_pred             Hhhcccc
Confidence            9999764

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.76  E-value=1.4e-17  Score=165.90  Aligned_cols=218  Identities=15%  Similarity=0.123  Sum_probs=145.6

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC
Q 012296          204 YGRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~e-~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd  281 (466)
                      ..+|+++...+|++.+|++++.+ +.|++++|+ +++.+++..+  .|+.+++..|.|.......    ...+..+..++
T Consensus        51 ~~~Yp~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~--~~~~~~v~~p~~~~~~~~~----~~~~~~~~~v~  124 (355)
T d1lc5a_          51 IERYPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRAL----AQSGCEIRRWS  124 (355)
T ss_dssp             GGSCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHH----HHTTCEEEEEE
T ss_pred             hccCCCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhhh--ccccccccCCccceecccc----ccccccceeee
Confidence            45677777789999999999973 446666776 6666555443  3445555667776533222    22234444333


Q ss_pred             C------CCHHHHHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc------cccc
Q 012296          282 P------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK------ALSL  346 (466)
Q Consensus       282 ~------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~------~l~~  346 (466)
                      .      ...+++++++.++ +++|++++|+||||.+++   +++|+++|+++++++|+|++|.......      ....
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~-~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~  203 (355)
T d1lc5a_         125 LREADGWQLTDAILEALTPD-LDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDN  203 (355)
T ss_dssp             CCGGGTTCCCTTHHHHCCTT-CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTC
T ss_pred             eeccCCccceeeeeeccccc-cceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeeccccccccccc
Confidence            1      1235567777764 999999999999999987   6678888899999999999986432211      1122


Q ss_pred             CCcEEEECCccccCccccceeEEEEeCHHH-HHHHHHHHHHhCCCchHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHH
Q 012296          347 GADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLGGALNPNAAYLIIRG---MKTLHLRVQQQNSTALRMAK  422 (466)
Q Consensus       347 gaDivv~S~sK~lgg~gdv~gG~ivg~~el-i~~l~~~~~~~G~~lsp~~a~l~l~~---L~tl~~R~~~~~~na~~La~  422 (466)
                      +..+++.|+||.++.+|. +.||++++++. .+.++..+..  ...+.....++...   .+.+..++++..++.+++.+
T Consensus       204 ~~~i~~~S~SK~~~l~Gl-R~G~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  280 (355)
T d1lc5a_         204 PHIWVLRSLTKFYAIPGL-RLGYLVNSDDAAMARMRRQQMP--WSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQ  280 (355)
T ss_dssp             TTEEEEEESTTTTTCTTT-CCEEEECCCHHHHHHHHHHSCT--TCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeecccccccccccc-cccceeccchhhhHHHHhhcCC--ccccccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence            356999999999997774 57888887654 4555544322  23344444444333   34566677778888899999


Q ss_pred             HHHcCCCeE
Q 012296          423 ILEAHPKVK  431 (466)
Q Consensus       423 ~L~~~p~V~  431 (466)
                      .|.+.+++.
T Consensus       281 ~l~~~~~~~  289 (355)
T d1lc5a_         281 ALCQLPLLT  289 (355)
T ss_dssp             HHHTSTTEE
T ss_pred             HHhhcCCcE
Confidence            999988764

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.76  E-value=1.6e-16  Score=162.03  Aligned_cols=211  Identities=18%  Similarity=0.149  Sum_probs=163.6

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH--ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHH
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME  286 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al--l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle  286 (466)
                      .+..++||+.||+++|.+.+++++||..|+..++.++  ..+||.|+.+...|.+....    ++..+.++..+...|.+
T Consensus        89 ~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g----~~ls~a~~~~f~Hnd~~  164 (396)
T d2bwna1          89 TAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEG----IKRNAGPKRIFRHNDVA  164 (396)
T ss_dssp             BHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHH----HHHSCCCEEEECTTCHH
T ss_pred             chHHHHHHHHHHHHhCCCceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhccchh----hhccccCceEeecchHH
Confidence            4677899999999999999999999999999999887  46889998888888775533    33456777778888988


Q ss_pred             HHHHhhc---CCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccc---------cccCCcEEEEC
Q 012296          287 GLEAALN---NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA---------LSLGADLVLHS  354 (466)
Q Consensus       287 ~Le~ai~---~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~---------l~~gaDivv~S  354 (466)
                      ++++.++   +.+.++|++|...+..|.+.|+++|.+++++||++|++||+++.++.-..         .....|+++.|
T Consensus       165 ~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gT  244 (396)
T d2bwna1         165 HLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGT  244 (396)
T ss_dssp             HHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEE
T ss_pred             HhhhHHhhhcccCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeec
Confidence            8877764   23467999999999999999999999999999999999999876553211         12246999999


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHHHH--HhCCCchHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHcC
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--~~G~~lsp~~a~l~l~~L~tl-----~~R~~~~~~na~~La~~L~~~  427 (466)
                      ++|.+|..    ||++.+++++++.++....  .+...++|..+..++..++-+     ..+.++...|.+.+.+.|.+.
T Consensus       245 lsKa~g~~----Gg~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~  320 (396)
T d2bwna1         245 LAKAYGVF----GGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL  320 (396)
T ss_dssp             SSSTTCSC----CEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccc----ccccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999976    5999999999998886543  455666776555444444322     223445567788888877764

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=7.4e-17  Score=164.65  Aligned_cols=213  Identities=18%  Similarity=0.166  Sum_probs=167.5

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHH
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~L  288 (466)
                      .+..++||+.||+++|.+.+++++||+.|+..++.++.+++|.|+++...|.+....+    ...+.++..+...|.+++
T Consensus        89 ~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~----~~~~a~~~~~~~~d~~~l  164 (401)
T d1fc4a_          89 QDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGV----RLCKAKRYRYANNDMQEL  164 (401)
T ss_dssp             BHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHH----HTSCSEEEEECTTCHHHH
T ss_pred             cHHHHHHHHHHHHhhcCCceEEecchhhhhHHHHHHhcCCCcEEEeCCcchHHHHccc----cccCceEEEEcCCChHHH
Confidence            5677899999999999999999999999999999999999999999999998866433    334556666777787777


Q ss_pred             HHhhcC-----CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc---------ccccCCcEEEEC
Q 012296          289 EAALNN-----NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------ALSLGADLVLHS  354 (466)
Q Consensus       289 e~ai~~-----~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~---------~l~~gaDivv~S  354 (466)
                      ++.++.     .+..+|++|+..+..|.+.|+++|.++|+++|++||+||+++.+....         .....+|+++.|
T Consensus       165 e~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~t  244 (401)
T d1fc4a_         165 EARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGT  244 (401)
T ss_dssp             HHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEE
T ss_pred             HHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEee
Confidence            766531     235799999999999999999999999999999999999977543311         111247999999


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHHH--HHhCCCchHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHcCC
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~~--~~~G~~lsp~~a~l~l~~L~t---l~~R~~~~~~na~~La~~L~~~p  428 (466)
                      ++|.++|.   .||++.+++++++.++...  ..++..++|..+..++..++.   .+.+.++..++.+.+.+.|.+..
T Consensus       245 l~Ka~gg~---~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g  320 (401)
T d1fc4a_         245 LGKALGGA---SGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAG  320 (401)
T ss_dssp             SSSTTCSS---SCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccccC---CcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhcccC
Confidence            99999765   3799999999998887543  345666777655555444443   35567888889999998888764

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.75  E-value=1.2e-16  Score=161.48  Aligned_cols=209  Identities=11%  Similarity=0.084  Sum_probs=137.4

Q ss_pred             HHHHHHHHHhhh----CC---CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC
Q 012296          212 TVVVEEKMSALE----GA---ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  283 (466)
Q Consensus       212 ~~~Lee~LA~l~----g~---e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~  283 (466)
                      ..+|++.+|+++    |.   .+.|++++|+ +++..++.+++++||+|++++|+|......+    ...|.++..++..
T Consensus        73 ~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~----~~~g~~~~~v~~~  148 (403)
T d1wsta1          73 FTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAF----KYYDPEFISIPLD  148 (403)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HTTCCEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHH----hhccccceeEeec
Confidence            445666666653    43   3455555555 9999999999999999999999999866443    4456665555322


Q ss_pred             ----CHHH-------HHHhhcCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCc----ccc--
Q 012296          284 ----DMEG-------LEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKA--  343 (466)
Q Consensus       284 ----Dle~-------Le~ai~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~----~~~--  343 (466)
                          +...       .....++ .+.++++.+|+||||.+++   +++|+++|++||++||+|++|.....    ..+  
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~  227 (403)
T d1wsta1         149 DKGMRVDLLEEKLEELRKQGKR-VKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIK  227 (403)
T ss_dssp             TTEECHHHHHHHHHHHHHTTCC-CCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGG
T ss_pred             ccCCccccccccchhhhhcccc-ccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCccc
Confidence                2221       2222223 3678888999999999986   56788889999999999999864321    111  


Q ss_pred             --cccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHH--HHHHh---h-HHHHHHHHHHHH
Q 012296          344 --LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAY--LIIRG---M-KTLHLRVQQQNS  415 (466)
Q Consensus       344 --l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~--l~l~~---L-~tl~~R~~~~~~  415 (466)
                        ...+..+++.|+||.++ +| .+.||+++++++++.+...........+.....  .....   . +.+....+...+
T Consensus       228 ~~~~~~~~i~~~S~SK~~~-~G-~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (403)
T d1wsta1         228 HFDDYGRVIYLGTFSKILA-PG-FRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKP  305 (403)
T ss_dssp             GGCSSSCEEEEEESTTTTC-GG-GCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcEEEEccccceec-Cc-ccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHH
Confidence              23356799999999996 55 468999999999988877655444333332211  11111   1 123334455566


Q ss_pred             HHHHHHHHHHcC
Q 012296          416 TALRMAKILEAH  427 (466)
Q Consensus       416 na~~La~~L~~~  427 (466)
                      +++.+.+.|.++
T Consensus       306 ~~~~~~~~L~~~  317 (403)
T d1wsta1         306 RRDAMLEALEEY  317 (403)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            777777777754

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.74  E-value=5e-17  Score=164.85  Aligned_cols=220  Identities=10%  Similarity=0.061  Sum_probs=141.8

Q ss_pred             CccccCCCchhHHHHHHHHHhhhCC-------CcEEEeC--CHH----HHHHHHHHHHccCCCEEEEcCCCCcchHHHHH
Q 012296          201 SFEYGRYGNPTTVVVEEKMSALEGA-------ESTVIMA--SGM----SASTVMLLALVPAGGHIVTTTDCYRKTRIFIE  267 (466)
Q Consensus       201 ~~~Y~R~~np~~~~Lee~LA~l~g~-------e~~l~~s--SGs----~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~  267 (466)
                      .+.|+..  ....+|++.+++++..       ++.++++  .++    .++..++.+++.+||+|++++|.|+.....  
T Consensus        64 ~~~Y~~~--~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~--  139 (401)
T d7aata_          64 DKEYLPI--AGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPI--  139 (401)
T ss_dssp             CCCCCCT--TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHH--
T ss_pred             CCCCCCC--CCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhH--
Confidence            3556632  2334677777765421       2333332  222    467777888999999999999999986643  


Q ss_pred             hhcccCCceEEEeCC-------CCHHHHHHhhcC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCC
Q 012296          268 TVLPKMGITATVIDP-------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF  335 (466)
Q Consensus       268 ~~l~~~Gi~v~~vd~-------~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~  335 (466)
                        +...|.+++.++.       .+.+.+.+.+..  .+++++++++|+||||.+++   +++|+++|++|++++|.|++|
T Consensus       140 --~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y  217 (401)
T d7aata_         140 --FRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAY  217 (401)
T ss_dssp             --HHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             --HHHcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccc
Confidence              3456777766642       256777766642  24899999999999999985   678999999999999999998


Q ss_pred             CCCCccc----c------cc-cCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH--------HHhCCCchHHHH
Q 012296          336 ATPLNQK----A------LS-LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--------HVLGGALNPNAA  396 (466)
Q Consensus       336 a~~~~~~----~------l~-~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~--------~~~G~~lsp~~a  396 (466)
                      .......    .      .. ...-+++.|++|.++.+|++ .|+++++.++++.+.+..        ...... +...+
T Consensus       218 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R-iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q  295 (401)
T d7aata_         218 QGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGER-AGAFTVICRDAEEAKRVESQLKILIRPMYSNP-PMNGA  295 (401)
T ss_dssp             TTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGC-EEEEEEECSSHHHHHHHHHHHHHHHHHHHSSC-CHHHH
T ss_pred             hhhhcCCcccchhhhhhhhhhhcccceeEeccccceeeccc-cceeecchHHHHHHHHHHHHHHHHhhcccccc-chHHH
Confidence            7644321    1      01 12347888999999999865 677777665554433221        122222 22222


Q ss_pred             HHHHHh----------hHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012296          397 YLIIRG----------MKTLHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       397 ~l~l~~----------L~tl~~R~~~~~~na~~La~~L~~~p  428 (466)
                      ..+...          .+.+....+++.++++.+.+.|+++.
T Consensus       296 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~  337 (401)
T d7aata_         296 RIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG  337 (401)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            222111          12334445556778888999998864

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=6.6e-17  Score=164.64  Aligned_cols=208  Identities=15%  Similarity=0.155  Sum_probs=136.1

Q ss_pred             HHHHHHHHhh----hCC----CcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          213 VVVEEKMSAL----EGA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       213 ~~Lee~LA~l----~g~----e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      ..|++.||++    .|.    .+.|++++|+ +|+.+++.+++.+||+|++++|.|......    ++..|.++..++. 
T Consensus        83 ~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~----~~~~g~~~~~~~~~  158 (420)
T d1vp4a_          83 PVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINA----FRQYLANFVVVPLE  158 (420)
T ss_dssp             HHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHTTTCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhccccccccccccccchhHH----HHHHhhhccccccc
Confidence            3555555554    343    3456666666 999999999999999999999999976533    3455666665542 


Q ss_pred             ---CCHHHHHHhhc--------CCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCCCccc----c-
Q 012296          283 ---ADMEGLEAALN--------NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A-  343 (466)
Q Consensus       283 ---~Dle~Le~ai~--------~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~~~~~----~-  343 (466)
                         .+++.++..+.        ...+.++++++|+||||.+++   +++|+++|+++++++|+|++|....+..    + 
T Consensus       159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~  238 (420)
T d1vp4a_         159 DDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPI  238 (420)
T ss_dssp             TTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCH
T ss_pred             ccccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccc
Confidence               25555544321        112457778899999999985   6789999999999999999987543211    1 


Q ss_pred             ---cccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhh------HHHHHHHHHHH
Q 012296          344 ---LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM------KTLHLRVQQQN  414 (466)
Q Consensus       344 ---l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L------~tl~~R~~~~~  414 (466)
                         ...+..+++.|++|+++ +| .+.||+++++++++++.+.....+...+.....++...+      +.+....+...
T Consensus       239 ~~~~~~~~~i~~~s~sk~~~-~G-~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~  316 (420)
T d1vp4a_         239 FKIGGPERVVLLNTFSKVLA-PG-LRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYR  316 (420)
T ss_dssp             HHHHCTTTEEEEEESTTTTC-GG-GCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHH
T ss_pred             cccccccceeEEeccccccc-cc-cccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhh
Confidence               12234577888888875 55 468999999999999887766655444433322222221      22333344445


Q ss_pred             HHHHHHHHHHHc
Q 012296          415 STALRMAKILEA  426 (466)
Q Consensus       415 ~na~~La~~L~~  426 (466)
                      ++.+.+.+.|++
T Consensus       317 ~~~~~~~~~L~~  328 (420)
T d1vp4a_         317 RKRTVMLNALEE  328 (420)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhcccchhhhhh
Confidence            555555555543

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.73  E-value=3.9e-17  Score=168.08  Aligned_cols=215  Identities=14%  Similarity=0.171  Sum_probs=144.3

Q ss_pred             ccccCCCchhHHHHHHHHHhhh---C-C---CcEEEeCCHH-HHHHHHHHHH--------ccCCCEEEEcCCCCcchHHH
Q 012296          202 FEYGRYGNPTTVVVEEKMSALE---G-A---ESTVIMASGM-SASTVMLLAL--------VPAGGHIVTTTDCYRKTRIF  265 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~---g-~---e~~l~~sSGs-~Ai~~al~al--------l~~Gd~Vlv~~~~y~~t~~~  265 (466)
                      |.|....+....+|++.|++++   | +   +.-|++++|+ ++|.+++.+|        +.|||+||++.|.|..+...
T Consensus        92 y~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~  171 (425)
T d2hoxa1          92 YFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQ  171 (425)
T ss_dssp             SSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHH
T ss_pred             eecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHH
Confidence            4344334444567888888875   3 1   3468888887 9999999998        57899999999999876543


Q ss_pred             HHhhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccc-cc
Q 012296          266 IETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK-AL  344 (466)
Q Consensus       266 ~~~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~-~l  344 (466)
                      . .++......+.    .|.+.++++++++ ++++++++||||||.+..       +-.+++.+|+|++|..+.+.. +.
T Consensus       172 ~-~~~~~~~~~~~----~D~~~~~~~~~~~-~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f~~~~~  238 (425)
T d2hoxa1         172 T-KYFDKKGYVWA----GNAANYVNVSNPE-QYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIKY  238 (425)
T ss_dssp             H-HHSCBTTEEEE----EEGGGGTTCSCGG-GEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCCCS
T ss_pred             H-HHcCCCCCccC----CCHHHHHhhCCCC-ceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccccchhh
Confidence            3 23322222222    2567888888775 999999999999998742       223689999999986543211 22


Q ss_pred             ccCCcEEEECCccccCccccceeEEE-EeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhH---------------HHHH
Q 012296          345 SLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---------------TLHL  408 (466)
Q Consensus       345 ~~gaDivv~S~sK~lgg~gdv~gG~i-vg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~---------------tl~~  408 (466)
                      ....+|++.|+||.++.+|++ .||+ +.++++++++.+.......+.+......++..++               .++.
T Consensus       239 ~~~~~Ivl~S~SK~fglaGlR-iGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~  317 (425)
T d2hoxa1         239 KADEDILLFTMSKFTGHSGSR-FGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTF  317 (425)
T ss_dssp             CBCCSEEEEEHHHHTSCGGGC-CEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHH
T ss_pred             hcCCeEEEEeCHHhccCcchh-eeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            234689999999999999865 6765 5566777888776655444444433333333332               2233


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCe
Q 012296          409 RVQQQNSTALRMAKILEAHPKV  430 (466)
Q Consensus       409 R~~~~~~na~~La~~L~~~p~V  430 (466)
                      ..++..++.+.+.+.|++.+..
T Consensus       318 ~~~~l~~r~~~l~~~L~~~~~~  339 (425)
T d2hoxa1         318 GFKKLRERWVNITALLDQSDRF  339 (425)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSSE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCc
Confidence            3455667778888888876543

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.73  E-value=4.2e-17  Score=168.29  Aligned_cols=220  Identities=12%  Similarity=0.012  Sum_probs=143.2

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEe--CC--
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI--DP--  282 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~v--d~--  282 (466)
                      +.....++|+.+|+++|++++++++||+ +++.+++.+++++||+||+++.+|.+++.... .+...+..+.+.  +.  
T Consensus        64 ~~~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~-~l~~~~~~~~~~~~~~~g  142 (462)
T d1c4ka2          64 HEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSAL-AMAGGRPVYLQTNRNPYG  142 (462)
T ss_dssp             TBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHT-TTTCCEEEEECEEECTTC
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHH-HHhcCCceeeeccccccc
Confidence            4567889999999999999999999998 56677788999999999999999998765432 232223232222  11  


Q ss_pred             ---------CCHH---------HHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccc-
Q 012296          283 ---------ADME---------GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA-  343 (466)
Q Consensus       283 ---------~Dle---------~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~-  343 (466)
                               .+.+         .+++++..+ +.++++.+.+|..|.+.|+++|+++|+++|++|++|++++.+....+ 
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~  221 (462)
T d1c4ka2         143 FIGGIYDSDFDEKKIRELAAKVDPERAKWKR-PFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPM  221 (462)
T ss_dssp             CEEEECGGGSCHHHHHHHTTTSSHHHHTCSC-CBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGG
T ss_pred             ccCCCChHHhhHHHHHhhhhhhcHHhhhccC-CceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCc
Confidence                     1222         233344443 55555566677899999999999999999999999999775433211 


Q ss_pred             -------------cccCCcEEEECCccccCccccceeEEEEeCHHHH---------HHHHHHHHHhCCC--chHHHH---
Q 012296          344 -------------LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV---------TQIRNLHHVLGGA--LNPNAA---  396 (466)
Q Consensus       344 -------------l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli---------~~l~~~~~~~G~~--lsp~~a---  396 (466)
                                   ...++|+++.|+||++++++  .++++..+++.+         +.++.....+..+  .....+   
T Consensus       222 ~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~  299 (462)
T d1c4ka2         222 MRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALD  299 (462)
T ss_dssp             GGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             CCcchhhccccccccCCccEEEEecCccccccc--ceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHH
Confidence                         12245999999999999886  345555444332         2233322222211  111111   


Q ss_pred             -HHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 012296          397 -YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       397 -~l~l~~L~tl~~R~~~~~~na~~La~~L~~~p~V~  431 (466)
                       .............+++..++++++.+.+++.+...
T Consensus       300 ~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~  335 (462)
T d1c4ka2         300 VNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMF  335 (462)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence             11111122234446677888999999998876543

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.73  E-value=1.2e-16  Score=160.58  Aligned_cols=213  Identities=19%  Similarity=0.214  Sum_probs=170.3

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCC--CEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC--
Q 012296          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAG--GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  283 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~al-l~~G--d~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~--  283 (466)
                      .|.+++||+.+++++|.+.+++++||+.|+.+++.++ +++|  |+|+++..+|.++...    +...|.+++++|.+  
T Consensus        30 G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~a----i~~~G~~pv~vDi~~~  105 (371)
T d2fnua1          30 GKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANM----LLESGYTPVFAGIKND  105 (371)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHH----HHHTTCEEEECCBCTT
T ss_pred             CHHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhcccCCCCCeeeccccccccccee----eeccCccccccccccc
Confidence            4889999999999999999999999999999999987 3444  4899999999887643    33478999998854  


Q ss_pred             ---CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCccccc--ccCCcEEEECC--c
Q 012296          284 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKAL--SLGADLVLHSA--T  356 (466)
Q Consensus       284 ---Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l--~~gaDivv~S~--s  356 (466)
                         +.+++++.++++ |++|++.   +..|...|+++|.++|+++|+++|.|.+++.+......  ...-|+.++|+  +
T Consensus       106 ~~~~~~~~~~~~~~~-t~avi~v---h~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~  181 (371)
T d2fnua1         106 GNIDELALEKLINER-TKAIVSV---DYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAI  181 (371)
T ss_dssp             SSBCGGGSGGGCCTT-EEEEEEE---CGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred             ccccchhhhhhccch-hhccccc---cccccccccccccccccccchhhccchhhccCceeccccCCccccccccccccc
Confidence               467788888875 9998863   56699999999999999999999999998765443322  22247777776  7


Q ss_pred             cccCccccceeEEEEeC-HHHHHHHHHHHHH--------------hC--CCchHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 012296          357 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHV--------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNSTALR  419 (466)
Q Consensus       357 K~lgg~gdv~gG~ivg~-~eli~~l~~~~~~--------------~G--~~lsp~~a~l~l~~L~tl~~R~~~~~~na~~  419 (466)
                      |.+...+   ||+++++ +++.++++..+..              .|  ..++.+.|.+++..|+.++..+++..++++.
T Consensus       182 K~l~~g~---GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~~~~~~R~~~~~~  258 (371)
T d2fnua1         182 KPITTAE---GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALT  258 (371)
T ss_dssp             SSSCCSS---CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             ccccccc---ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhhccchhhhhhhhhhh
Confidence            9998765   6777765 5788888765531              12  3467888889999999999999999999999


Q ss_pred             HHHHHHcCCCeEE
Q 012296          420 MAKILEAHPKVKR  432 (466)
Q Consensus       420 La~~L~~~p~V~~  432 (466)
                      +.+.|.+.+.+..
T Consensus       259 y~~~l~~~~~~~~  271 (371)
T d2fnua1         259 YDRIFKDNPYFTP  271 (371)
T ss_dssp             HHHHHTTCSSEEE
T ss_pred             hcccccccccccc
Confidence            9999999887653

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.73  E-value=9.6e-17  Score=166.49  Aligned_cols=218  Identities=17%  Similarity=0.166  Sum_probs=151.2

Q ss_pred             CCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEE
Q 012296          200 ASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (466)
Q Consensus       200 ~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~  279 (466)
                      +...|+  ++|+..+||+.+|+++|.+.+++++||++|+.+++.+++++||+|+.... +..+...+.    ..|.....
T Consensus        67 GDd~Y~--~dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~-f~~~~~~i~----~~g~~~~~  139 (456)
T d1c7ga_          67 GDEAYA--GSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMY-FTTTRFHQE----KNGATFVD  139 (456)
T ss_dssp             CCCCSS--SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTEEEEESSC-CHHHHHHHH----HTTEEEEE
T ss_pred             cchhcc--CCchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHhcCCCCeEecCcc-hHHHHHHHH----HcCceeee
Confidence            445677  69999999999999999999999999999999999999999999987655 333322221    12333222


Q ss_pred             eC---------------CCCHHHHHHhhcCC---CceEEEEeCCCCCCc-ccc---cHHHHHHHHHhcCCEEEEeCCCCC
Q 012296          280 ID---------------PADMEGLEAALNNN---NVSLFFTESPTNPFL-RCV---DVKLVSDLCHKKGAIVCIDGTFAT  337 (466)
Q Consensus       280 vd---------------~~Dle~Le~ai~~~---~tklV~lesP~NPtG-~v~---dl~~Ia~la~~~gillIvDea~a~  337 (466)
                      +.               ..|+++|+++|+++   .+.++++++++|+.| .+.   ++++|.++|++||+++++|++...
T Consensus       140 ~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~  219 (456)
T d1c7ga_         140 IVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCV  219 (456)
T ss_dssp             CBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHH
T ss_pred             ccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhh
Confidence            11               23799999998643   357999999999875 444   578899999999999999999431


Q ss_pred             C-----------Ccc-cc------cccCCcEEEECCccccCccccceeEEEEeC-HHHHHHHHHHHHHhCC-----CchH
Q 012296          338 P-----------LNQ-KA------LSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG-----ALNP  393 (466)
Q Consensus       338 ~-----------~~~-~~------l~~gaDivv~S~sK~lgg~gdv~gG~ivg~-~eli~~l~~~~~~~G~-----~lsp  393 (466)
                      .           +.. ..      .-..+|+++.|++|.++++.   ||+++++ +++.++++.+....++     .+..
T Consensus       220 ~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~---GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~  296 (456)
T d1c7ga_         220 ENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNI---GGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAG  296 (456)
T ss_dssp             HHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSS---CEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCH
T ss_pred             cchhhhcccccccCCCChhhhccccccccccEEEeccccccccc---eeEEEcCCHHHHHHHHHhccccCCCcccchhhH
Confidence            1           110 00      11237999999999999874   7888876 5677777765544332     2222


Q ss_pred             HHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHcC
Q 012296          394 NAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       394 ~~a~l~l~~L~tl--~~R~~~~~~na~~La~~L~~~  427 (466)
                      ..+..+..++...  ...+++..+++++|.+.|++.
T Consensus       297 ~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~  332 (456)
T d1c7ga_         297 RDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREA  332 (456)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence            2332222233221  234566677888999999876

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=2.4e-16  Score=157.70  Aligned_cols=169  Identities=18%  Similarity=0.138  Sum_probs=132.1

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHH----HccCCCEEEEcCCCCcchHHHHHhhcccCCc
Q 012296          202 FEYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  275 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~a----ll~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi  275 (466)
                      |.+++......++.++.+++++|+  ++.++++|+++++..++..    ...+|+.|++....|+.....+ ..++..|+
T Consensus        36 ~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~~~~~g~  114 (376)
T d1eg5a_          36 HGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETM-KYLSMKGF  114 (376)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHH-HHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHHH-HHHHhcCC
Confidence            344444455567789999999998  4677777888998888754    3567888888877777655444 45667799


Q ss_pred             eEEEeCC-----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhc--CCEEEEeCCCCCCC-cccccccC
Q 012296          276 TATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPL-NQKALSLG  347 (466)
Q Consensus       276 ~v~~vd~-----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~--gillIvDea~a~~~-~~~~l~~g  347 (466)
                      +++.++.     .|+++++++++++ |++|++++++|+||...|++++.++++.+  ++++++|+++..+. ..+..+++
T Consensus       115 ~v~~vp~~~~~~id~~~l~~~i~~~-t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~  193 (376)
T d1eg5a_         115 KVKYVPVDSRGVVKLEELEKLVDED-TFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLE  193 (376)
T ss_dssp             EEEECCBCTTSCBCHHHHHHHCCTT-EEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTC
T ss_pred             EEEEEcCCCCCeECHHHHHHhcCCC-ceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeeccccccccccccC
Confidence            9988863     3799999999985 99999999999999999999999998654  89999999976654 34555678


Q ss_pred             CcEEEECCccccCccccceeEEEEeCHH
Q 012296          348 ADLVLHSATKFIGGHNDVLAGSISGSGK  375 (466)
Q Consensus       348 aDivv~S~sK~lgg~gdv~gG~ivg~~e  375 (466)
                      +|+++.|++||+|++|   +|+++.+++
T Consensus       194 ~D~~~~s~~K~~gp~G---~~~l~~~~~  218 (376)
T d1eg5a_         194 VDYASFSAHKFHGPKG---VGITYIRKG  218 (376)
T ss_dssp             CSEEEEEGGGGTSCTT---CEEEEECTT
T ss_pred             ccceecccceeecCCC---ceeEEeccC
Confidence            9999999999998776   466665553

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.68  E-value=7.9e-16  Score=157.19  Aligned_cols=207  Identities=15%  Similarity=0.166  Sum_probs=146.4

Q ss_pred             HHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC--------C
Q 012296          215 VEEKMSALEGAE-STVIMASGM-SASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--------P  282 (466)
Q Consensus       215 Lee~LA~l~g~e-~~l~~sSGs-~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd--------~  282 (466)
                      +...+++++|.+ .+.++..|+ +++.+++.+..  .++++|++++..|.+....+    ...|+....++        .
T Consensus       118 ~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~----~~~g~~~~~v~~~~~~~~~~  193 (434)
T d2z67a1         118 ILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAV----SFVGMNMRLVETVLDGDRVY  193 (434)
T ss_dssp             HHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH----HHTTCEEEEECCEEETTEEE
T ss_pred             HHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHH----HHhCCcceEEEeecCCCccC
Confidence            334566777874 344444444 66666666653  47899999999999876544    34466655554        2


Q ss_pred             CCHHHHHHhhcC----CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCc------ccccccCCcEEE
Q 012296          283 ADMEGLEAALNN----NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN------QKALSLGADLVL  352 (466)
Q Consensus       283 ~Dle~Le~ai~~----~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~------~~~l~~gaDivv  352 (466)
                      .|+++|+++|++    .++.+|++++|++++|.+.|+++|+++|+++|+++++|++++....      ..+...|+|+++
T Consensus       194 ~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~  273 (434)
T d2z67a1         194 VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVV  273 (434)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEE
T ss_pred             CCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcceEE
Confidence            489999999963    2478899999999999999999999999999999999999976542      234567899999


Q ss_pred             ECCccccCccccceeEEE-EeCHHHHHHHHHHHHHhCCCchHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          353 HSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAAYLII--RGMKTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       353 ~S~sK~lgg~gdv~gG~i-vg~~eli~~l~~~~~~~G~~lsp~~a~l~l--~~L~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      .|+||+++++.+  +|++ +.++++++++...............+|..+  .+.+.+....++..++++++.+.|++.
T Consensus       274 ~s~hK~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l  349 (434)
T d2z67a1         274 SSSDKNLLTPIG--GGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDL  349 (434)
T ss_dssp             EEHHHHHCCCSS--CEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EcCccccccCCC--ccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh
Confidence            999999988752  3444 456677777665443333333333344433  344556667777888888888888764

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=2.8e-15  Score=144.41  Aligned_cols=243  Identities=17%  Similarity=0.184  Sum_probs=153.6

Q ss_pred             ccCCCccCChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEcCCC
Q 012296          179 NTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDC  258 (466)
Q Consensus       179 ~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~  258 (466)
                      +|+|.+-|+.+.++++.+...+.-.|+  ++|...+||+.||+++|.+++++++||++|+.+++.++.++||.+++..+.
T Consensus         5 ~~~~~t~p~p~v~~A~~~a~~g~~~yg--~~p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~~~~g~~~~~~~~~   82 (343)
T d1m6sa_           5 RSDTVTKPTEEMRKAMAQAEVGDDVYG--EDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADS   82 (343)
T ss_dssp             SCGGGCCCCHHHHHHHHTCCCCCGGGT--CCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTC
T ss_pred             ccccCCCCCHHHHHHHHhhhcCCcccC--CCHHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhccCCceeccccc
Confidence            455556677776666655443333455  579999999999999999999999999999999999999999999999988


Q ss_pred             CcchHHHHHhhcccCCceEEEeC----CCCHHHHHHhhcCC-----CceEEEE-eCCCCCCccccc---HHHHHHHHHhc
Q 012296          259 YRKTRIFIETVLPKMGITATVID----PADMEGLEAALNNN-----NVSLFFT-ESPTNPFLRCVD---VKLVSDLCHKK  325 (466)
Q Consensus       259 y~~t~~~~~~~l~~~Gi~v~~vd----~~Dle~Le~ai~~~-----~tklV~l-esP~NPtG~v~d---l~~Ia~la~~~  325 (466)
                      |..+...... ....+..+..++    ..|++.+++.+...     ++.++++ ..++|+.|.+.+   +++|+++|+++
T Consensus        83 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  161 (343)
T d1m6sa_          83 HIFWYEVGAM-AVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEH  161 (343)
T ss_dssp             HHHHSSTTHH-HHHTCCEEEEECEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH
T ss_pred             cceeeecccc-cccccceeeccccccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhc
Confidence            8653321111 111223333332    23788888888643     2344444 456677777765   56788888999


Q ss_pred             CCEEEEeCCCCCCCc------ccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchH--HHHH
Q 012296          326 GAIVCIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP--NAAY  397 (466)
Q Consensus       326 gillIvDea~a~~~~------~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp--~~a~  397 (466)
                      |+++++|+++.....      ........+..+.+.+|..++.   .+|++++..+++..+...+...+.....  ..+.
T Consensus       162 g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  238 (343)
T d1m6sa_         162 GINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP---VGSVVVGDRDFIERARKARKMLGGGMRQAGVLAA  238 (343)
T ss_dssp             TCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS---SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHH
T ss_pred             CeEEEeccccccccccccccchhhhcccccccccccccccccc---ccccccccHHHHhhhHhhCcccccccchhHHHHH
Confidence            999999999654211      1111123455666666666554   3688888888887777666555543322  1111


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          398 LIIRGMKTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       398 l~l~~L~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      ...........+.+...++...+.+.+.+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (343)
T d1m6sa_         239 AGIIALTKMVDRLKEDHENARFLALKLKEI  268 (343)
T ss_dssp             HHHHHHHHSSTTHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHhhhHHHHh
Confidence            112222222233444555556666655543

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.66  E-value=4.5e-16  Score=156.56  Aligned_cols=169  Identities=15%  Similarity=0.139  Sum_probs=128.1

Q ss_pred             hhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHH------ccCCCEEEEcCCCCcchHHHHHhh-cccCCceEEEe
Q 012296          210 PTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLAL------VPAGGHIVTTTDCYRKTRIFIETV-LPKMGITATVI  280 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~al------l~~Gd~Vlv~~~~y~~t~~~~~~~-l~~~Gi~v~~v  280 (466)
                      ...+++++++|+++|+  ++.+++.++++++..++...      ..+|+.|++.+..|.+........ .+...+.+...
T Consensus        70 ~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (404)
T d1qz9a_          70 DLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLR  149 (404)
T ss_dssp             GHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceecc
Confidence            5677899999999998  57888888888887765432      357888888888877654443332 22222333333


Q ss_pred             CCCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEECCcccc
Q 012296          281 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI  359 (466)
Q Consensus       281 d~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S~sK~l  359 (466)
                      ...+++.++++++++ |++|.+.+++|.||.+.|+++|+++|+++|+++++|.+++.+. ..+...+++|+++.|.+||+
T Consensus       150 ~~~~~~~~~~~i~~~-T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~  228 (404)
T d1qz9a_         150 LVDSPEELPQAIDQD-TAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYL  228 (404)
T ss_dssp             EESSGGGHHHHCSTT-EEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTT
T ss_pred             ccccchhHHHhcCCC-ceEEEEecccccccceecHHHHhccccccccceeEEeeccccccccccccccceEEEEechhhc
Confidence            344688999999986 9999999999999999999999999999999999999987654 34555679999999999998


Q ss_pred             CccccceeEEEEeCHHHHHHH
Q 012296          360 GGHNDVLAGSISGSGKLVTQI  380 (466)
Q Consensus       360 gg~gdv~gG~ivg~~eli~~l  380 (466)
                      .++.. .+|+++.++++.+.+
T Consensus       229 ~~~~g-~~g~~~~~~~~~~~~  248 (404)
T d1qz9a_         229 NGGPG-SQAFVWVSPQLCDLV  248 (404)
T ss_dssp             CCCTT-CCCEEEECTTTTTTS
T ss_pred             ccCCc-eEEEEEechhhhhhC
Confidence            65432 367888877665443

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.66  E-value=4.2e-15  Score=150.95  Aligned_cols=221  Identities=13%  Similarity=0.057  Sum_probs=133.8

Q ss_pred             CCccccCCCchhHHHHHHHHHhhhCC--------Cc-EEEeC-CHHHHHHHHHH-------HHccCCCEEEEcCCCCcch
Q 012296          200 ASFEYGRYGNPTTVVVEEKMSALEGA--------ES-TVIMA-SGMSASTVMLL-------ALVPAGGHIVTTTDCYRKT  262 (466)
Q Consensus       200 ~~~~Y~R~~np~~~~Lee~LA~l~g~--------e~-~l~~s-SGs~Ai~~al~-------all~~Gd~Vlv~~~~y~~t  262 (466)
                      ..+.|+.  .....+|++.+++++..        +. .++.+ +++.++..+..       +++.+||+|++++|.|+..
T Consensus        66 ~~~~Y~p--~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y  143 (412)
T d1ajsa_          66 LNHEYLP--ILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENH  143 (412)
T ss_dssp             CCCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHH
T ss_pred             cCCCCCC--CCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhh
Confidence            3455663  23344788888876521        22 33333 33344433333       2368999999999999876


Q ss_pred             HHHHHhhcccCCce-EEEe---CC----CCHHHHHHhh---cCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCE
Q 012296          263 RIFIETVLPKMGIT-ATVI---DP----ADMEGLEAAL---NNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAI  328 (466)
Q Consensus       263 ~~~~~~~l~~~Gi~-v~~v---d~----~Dle~Le~ai---~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gil  328 (466)
                      ...+.    ..|.+ +.+.   +.    .|.+.+++.+   .+ +++++++++||||||.+++   +++|+++|++||++
T Consensus       144 ~~~~~----~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~  218 (412)
T d1ajsa_         144 NGVFT----TAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPE-FSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLF  218 (412)
T ss_dssp             HHHHH----HTTCSCEEEEECEETTTTEECHHHHHHHHHHSCT-TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHHHH----HcCCeEEEeecccccccccccHHHHHHHHHhccC-CcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEE
Confidence            64443    34543 2211   11    2556655543   34 4899999999999999996   77899999999999


Q ss_pred             EEEeCCCCCCCcccc-----------cccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHH-------HHhCCC
Q 012296          329 VCIDGTFATPLNQKA-----------LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-------HVLGGA  390 (466)
Q Consensus       329 lIvDea~a~~~~~~~-----------l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~-------~~~G~~  390 (466)
                      +|.||+|........           ......+++.|++|.++.+|++ .|++++..++.+.+.+..       ......
T Consensus       219 ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (412)
T d1ajsa_         219 PFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNER-VGNLTVVAKEPDSILRVLSQMQKIVRVTWSN  297 (412)
T ss_dssp             EEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGC-EEEEEEECSSHHHHHHHHHHHHHHHHTTTSS
T ss_pred             EEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCC-ccccccchhHHHHHHHHHHHHHHHhhccccc
Confidence            999999876443210           1112458889999999999865 667666554433332211       111112


Q ss_pred             chHHHHHHH---HH-------hhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012296          391 LNPNAAYLI---IR-------GMKTLHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       391 lsp~~a~l~---l~-------~L~tl~~R~~~~~~na~~La~~L~~~p  428 (466)
                      .+...+.++   +.       ..+.+....+++.++++.+.+.|+++.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~  345 (412)
T d1ajsa_         298 PPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALK  345 (412)
T ss_dssp             CCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            222222111   11       123344455667778888999998764

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7.6e-16  Score=154.23  Aligned_cols=168  Identities=14%  Similarity=0.169  Sum_probs=130.0

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEe-CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC-----
Q 012296          210 PTTVVVEEKMSALEGAE--STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-----  281 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e--~~l~~-sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd-----  281 (466)
                      ...+++++.|++++|.+  ..+++ .||+.++++++..++.+|+++++....+.+.....  .....+..+..+.     
T Consensus        52 ~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  129 (388)
T d1h0ca_          52 QIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVD--IGERIGARVHPMTKDPGG  129 (388)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHHHHHH--HHHHHC--CBCCBCCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhccCCceeeecccceeeeecc--ccccccccccccccCCcc
Confidence            44677899999999984  24555 57889999999999999999999988887743322  2222232222222     


Q ss_pred             CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC-CcccccccCCcEEEECCccccC
Q 012296          282 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIG  360 (466)
Q Consensus       282 ~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~-~~~~~l~~gaDivv~S~sK~lg  360 (466)
                      ..|.+++++.+...+++++++.+.+|.+|.+.|+++|.++|+++|+++++|++++.+ ...+...+|+|+++.|.+|+++
T Consensus       130 ~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~  209 (388)
T d1h0ca_         130 HYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALN  209 (388)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTC
T ss_pred             ccchHHHHHHhccCCcceEEEeeeeeccccccCHHHHHHHhhcccccceeccccccccccccccccccceeccccccccc
Confidence            236777777665545899999999999999999999999999999999999998765 4456667899999999999999


Q ss_pred             ccccceeEEEEeCHHHHHHHH
Q 012296          361 GHNDVLAGSISGSGKLVTQIR  381 (466)
Q Consensus       361 g~gdv~gG~ivg~~eli~~l~  381 (466)
                      +++  .+|+++.+++.++.+.
T Consensus       210 gp~--g~~~~~~~~~~~~~~~  228 (388)
T d1h0ca_         210 APP--GTSLISFSDKAKKKMY  228 (388)
T ss_dssp             CCT--TCEEEEECHHHHHHHT
T ss_pred             CCC--ceEEEeecHHHHHhhh
Confidence            987  4688888888776653

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.64  E-value=1.3e-14  Score=147.58  Aligned_cols=221  Identities=10%  Similarity=0.045  Sum_probs=136.8

Q ss_pred             CCccccCCCchhHHHHHHHHHhhhCC--------CcEEE-eCCH-HHHHHH--HHHHHccCCCEEEEcCCCCcchHHHHH
Q 012296          200 ASFEYGRYGNPTTVVVEEKMSALEGA--------ESTVI-MASG-MSASTV--MLLALVPAGGHIVTTTDCYRKTRIFIE  267 (466)
Q Consensus       200 ~~~~Y~R~~np~~~~Lee~LA~l~g~--------e~~l~-~sSG-s~Ai~~--al~all~~Gd~Vlv~~~~y~~t~~~~~  267 (466)
                      ..+.|+-  .....+|++.+++++..        +..+. .++| ..++..  .+..++.+||.|++++|.|+.....  
T Consensus        65 ~~~~Y~p--~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~--  140 (412)
T d1yaaa_          65 YNHEYLG--ITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAI--  140 (412)
T ss_dssp             CCCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHH--
T ss_pred             cCCCCCC--CCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHH--
Confidence            3456663  33445777888776421        22322 2333 333333  3345678999999999999986543  


Q ss_pred             hhcccCCceEEEeCC-------CCHHHHHHhhcC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCC
Q 012296          268 TVLPKMGITATVIDP-------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF  335 (466)
Q Consensus       268 ~~l~~~Gi~v~~vd~-------~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~  335 (466)
                        +...|.++..++.       .+.+.+++.+..  .+++++++++||||||.+++   +++|+++|+++++++|.|++|
T Consensus       141 --~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y  218 (412)
T d1yaaa_         141 --FENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAY  218 (412)
T ss_dssp             --HHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             --HHHcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeeccee
Confidence              3445666655542       255666665532  23789999999999999986   778999999999999999998


Q ss_pred             CCCCcccc--------------cccCCcEEEECCccccCccccceeEEEEeCHHHHHHHH-----------HHHHHhCCC
Q 012296          336 ATPLNQKA--------------LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR-----------NLHHVLGGA  390 (466)
Q Consensus       336 a~~~~~~~--------------l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~-----------~~~~~~G~~  390 (466)
                      ........              ......+++.|+||.++.+|++ .||+++++++++.+.           ......-.+
T Consensus       219 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R-iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (412)
T d1yaaa_         219 QGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGER-VGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSN  297 (412)
T ss_dssp             TTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGC-EEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             eecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCc-eEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            76543211              0112348899999999999864 788877654322111           111112222


Q ss_pred             chHHHHHHHHHh----------hHHHHHHHHHHHHHHHHHHHHHHcC
Q 012296          391 LNPNAAYLIIRG----------MKTLHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       391 lsp~~a~l~l~~----------L~tl~~R~~~~~~na~~La~~L~~~  427 (466)
                      .+.+.+.++...          .+.++...+.+.++++.+.+.|+++
T Consensus       298 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  344 (412)
T d1yaaa_         298 PPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKL  344 (412)
T ss_dssp             CCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333332221          2334445566677888888888875

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=4.7e-15  Score=149.73  Aligned_cols=220  Identities=13%  Similarity=0.038  Sum_probs=135.7

Q ss_pred             CccccCCCchhHHHHHHHHHhhhCC--------Cc-EEE-eCCHHHH--HHHHHHHHccCCCEEEEcCCCCcchHHHHHh
Q 012296          201 SFEYGRYGNPTTVVVEEKMSALEGA--------ES-TVI-MASGMSA--STVMLLALVPAGGHIVTTTDCYRKTRIFIET  268 (466)
Q Consensus       201 ~~~Y~R~~np~~~~Lee~LA~l~g~--------e~-~l~-~sSGs~A--i~~al~all~~Gd~Vlv~~~~y~~t~~~~~~  268 (466)
                      .+.|+-  .....+|++.+++++..        +. ..+ +++|+.+  +...+...+.+||.|++++|.|+.....   
T Consensus        62 ~~~Y~p--~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~---  136 (396)
T d2q7wa1          62 TKNYLG--IDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSV---  136 (396)
T ss_dssp             CCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHH---
T ss_pred             CCCCCC--CcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHH---
Confidence            345653  33345777777776421        22 233 3344334  3344445578999999999999986543   


Q ss_pred             hcccCCceEEEeCCC-------CHHHHHHhh---cCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCC
Q 012296          269 VLPKMGITATVIDPA-------DMEGLEAAL---NNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF  335 (466)
Q Consensus       269 ~l~~~Gi~v~~vd~~-------Dle~Le~ai---~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~  335 (466)
                       +...|.++..++..       +.+.+++..   .+ +++++++++|+||||.+++   +++|+++|++|++++|+|++|
T Consensus       137 -~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y  214 (396)
T d2q7wa1         137 -FNSAGLEVREYAYYDAENHTLDFDALINSLNEAQA-GDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAY  214 (396)
T ss_dssp             -HHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCT-TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             -HHHcCCeeEecccccccccccccchHHHHHHHhcc-CcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccc
Confidence             34567776665421       344444433   33 4789999999999999986   568999999999999999999


Q ss_pred             CCCCcccc-----c-----ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH-------HhCCCchHHHHHH
Q 012296          336 ATPLNQKA-----L-----SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLGGALNPNAAYL  398 (466)
Q Consensus       336 a~~~~~~~-----l-----~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~-------~~G~~lsp~~a~l  398 (466)
                      ........     .     .....+++.|++|.++.+|++ .|++++..+.++.+.....       ....+.+...+.+
T Consensus       215 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~  293 (396)
T d2q7wa1         215 QGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNER-VGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASV  293 (396)
T ss_dssp             TTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGC-CEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred             cccccCCccCchHhhhhhhhcccccccccccccccccCCC-ccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHH
Confidence            86543210     0     122357888999999999865 6777776655544333221       1122222332222


Q ss_pred             HHH----------hhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012296          399 IIR----------GMKTLHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       399 ~l~----------~L~tl~~R~~~~~~na~~La~~L~~~p  428 (466)
                      +..          ..+.+....+++.++++.+.+.|+++.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~  333 (396)
T d2q7wa1         294 VATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG  333 (396)
T ss_dssp             HHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            211          123344444556777888899998873

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=5.6e-15  Score=150.99  Aligned_cols=206  Identities=12%  Similarity=0.137  Sum_probs=142.2

Q ss_pred             HHHHHHhhhCC---CcEEEeCCHH-HHHHHHHHHH---ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-----
Q 012296          215 VEEKMSALEGA---ESTVIMASGM-SASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (466)
Q Consensus       215 Lee~LA~l~g~---e~~l~~sSGs-~Ai~~al~al---l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----  282 (466)
                      +.+.+++++|.   ...+++++|+ .++.+++.++   ..++++||++...|.+....+    ...|++..+++.     
T Consensus        99 ~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~----~~~g~~~~~v~~~~~~~  174 (445)
T d3bc8a1          99 LVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSM----VTAGFEPVVIENVLEGD  174 (445)
T ss_dssp             HHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHH----HHTTCEEEEECCEEETT
T ss_pred             HHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHH----HHcCCeeEEEEeeccCc
Confidence            44567777886   3466667666 4454444443   456789999999998876443    345777666642     


Q ss_pred             ---CCHHHHHHhhcC---CCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcc--c----cccc-CCc
Q 012296          283 ---ADMEGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--K----ALSL-GAD  349 (466)
Q Consensus       283 ---~Dle~Le~ai~~---~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~--~----~l~~-gaD  349 (466)
                         .|+++|+++|++   .++.+|++++|+|++|.+.|+++|+++|+++|+++|+|++++.+...  .    .... ++|
T Consensus       175 ~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~vd  254 (445)
T d3bc8a1         175 ELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRID  254 (445)
T ss_dssp             EEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCC
T ss_pred             ccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcCCcc
Confidence               389999998853   24889999999999999999999999999999999999998865421  1    1222 589


Q ss_pred             EEEECCccccCccccceeEEEEe-CHHHHHHHHHHHHHhCCCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHc
Q 012296          350 LVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEA  426 (466)
Q Consensus       350 ivv~S~sK~lgg~gdv~gG~ivg-~~eli~~l~~~~~~~G~~lsp~~a~l~l~--~L~tl~~R~~~~~~na~~La~~L~~  426 (466)
                      +++.|+||+++++.  .+|+++. ++++++.+.......+.......+|..+.  +.+.+...+++..++++.+.+.|++
T Consensus       255 ~~~~s~hK~~~~p~--g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~  332 (445)
T d3bc8a1         255 AFVQSLDKNFMVPV--GGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKK  332 (445)
T ss_dssp             EEEEEHHHHHSCCS--SCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEecCccccccCC--CCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Confidence            99999999988775  2455555 56666666554443344444455555443  3344555566666777777776654

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=1.3e-14  Score=145.93  Aligned_cols=170  Identities=15%  Similarity=0.157  Sum_probs=113.1

Q ss_pred             CccccCCCchhHHHHHHHHHhhh----CC---CcEEEeCCHHH--HHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcc
Q 012296          201 SFEYGRYGNPTTVVVEEKMSALE----GA---ESTVIMASGMS--ASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP  271 (466)
Q Consensus       201 ~~~Y~R~~np~~~~Lee~LA~l~----g~---e~~l~~sSGs~--Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~  271 (466)
                      .+.|+..  ....+|++.+++++    +.   ...+++++|+.  ++.+.+..++.+||.|++++|.|+.....+    +
T Consensus        62 ~~~Y~p~--~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~----~  135 (394)
T d2ay1a_          62 TKTYAGL--SGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIM----N  135 (394)
T ss_dssp             CCCCCCS--SCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHH----H
T ss_pred             CCCCCCC--CCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHH----H
Confidence            3567643  23336666666653    22   34555666654  455556677899999999999999865443    3


Q ss_pred             cCCceEEEeCC-------CCHHHHHHhh---cCCCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeCCCCCC
Q 012296          272 KMGITATVIDP-------ADMEGLEAAL---NNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP  338 (466)
Q Consensus       272 ~~Gi~v~~vd~-------~Dle~Le~ai---~~~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDea~a~~  338 (466)
                      ..|.++..++.       .+.+++++..   .+ +++++++++||||||.+++   +++|+++|+++++++|.|++|...
T Consensus       136 ~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l  214 (394)
T d2ay1a_         136 FMGLPVQTYRYFDAETRGVDFEGMKADLAAAKK-GDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGF  214 (394)
T ss_dssp             HHTCCEEEEECEETTTTEECHHHHHHHHHTCCT-TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTS
T ss_pred             HcCCEEEEecccchhcccccchhHHHHHhhccc-CcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhh
Confidence            45665554432       1344444433   33 4788999999999999986   678999999999999999999865


Q ss_pred             Ccccc----------cccCCcEEEECCccccCccccceeEEEEeCHHHHH
Q 012296          339 LNQKA----------LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT  378 (466)
Q Consensus       339 ~~~~~----------l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~  378 (466)
                      .....          ......+++.|++|.++.+|++ .|++++....++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R-~G~~~~~~~~~~  263 (394)
T d2ay1a_         215 GDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRER-TGCLLALCADAA  263 (394)
T ss_dssp             SSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGC-EEEEEEECSSHH
T ss_pred             cccccccchhhhhhhhhcccccccccccccccCCccc-ccchhhchhHHH
Confidence            43210          1112346788999999998865 677766554443

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.61  E-value=1.1e-13  Score=136.52  Aligned_cols=167  Identities=14%  Similarity=0.081  Sum_probs=120.9

Q ss_pred             hhHHHHHHHHHhhhCCC--c-EE-EeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC--
Q 012296          210 PTTVVVEEKMSALEGAE--S-TV-IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  283 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e--~-~l-~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~--  283 (466)
                      ...+++++.+++++|++  + .+ +.+||+.++.+++.++..+++.+++....+.....................+..  
T Consensus        33 ~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (361)
T d1m32a_          33 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR  112 (361)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhhhcccccccccccCC
Confidence            45788999999999983  2 24 446788999999999998888777766655543322222222222222222211  


Q ss_pred             ---CHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEECCcccc
Q 012296          284 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI  359 (466)
Q Consensus       284 ---Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S~sK~l  359 (466)
                         +.+.......+ +++++.+...+|.||.+.|+++|.++||++|+++++|.+++.+. ..+..++++|+++.|.+|++
T Consensus       113 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l  191 (361)
T d1m32a_         113 PDVQAIDAILNADP-TISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCI  191 (361)
T ss_dssp             CCHHHHHHHHHHCT-TCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTT
T ss_pred             ccchhhHHHHHhcc-CccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcccccccccccceEEeeecccc
Confidence               23333444555 49999999999999999999999999999999999999987653 45666789999999999999


Q ss_pred             CccccceeEEEEeCHHHHHH
Q 012296          360 GGHNDVLAGSISGSGKLVTQ  379 (466)
Q Consensus       360 gg~gdv~gG~ivg~~eli~~  379 (466)
                      +|+.  ..|+++.+++..++
T Consensus       192 ~gp~--G~g~l~~~~~~~~~  209 (361)
T d1m32a_         192 QGVP--GFAFVIAREQKLAA  209 (361)
T ss_dssp             CCCS--SEEEEEEEHHHHTT
T ss_pred             cCCC--CceEEEechhhhhh
Confidence            8875  35888888765543

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=8.1e-15  Score=148.12  Aligned_cols=173  Identities=12%  Similarity=0.018  Sum_probs=118.2

Q ss_pred             ccCCccccCCCchhHHHHHHHHHhhhCC--------CcEEEeCCHH----HHHHHHHHHHccCCCEEEEcCCCCcchHHH
Q 012296          198 RRASFEYGRYGNPTTVVVEEKMSALEGA--------ESTVIMASGM----SASTVMLLALVPAGGHIVTTTDCYRKTRIF  265 (466)
Q Consensus       198 ~~~~~~Y~R~~np~~~~Lee~LA~l~g~--------e~~l~~sSGs----~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~  265 (466)
                      +...+.|+-  .....+|++.+++++..        +..+.+.+++    .++.+++..++.+||+|++++|.|+.....
T Consensus        60 ~~~~~~Y~p--~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~  137 (397)
T d3tata_          60 PHGASLYLP--MEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAI  137 (397)
T ss_dssp             CCSSBCCCC--TTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHH
T ss_pred             cccCCCCCC--cccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHH
Confidence            334455663  33445788888887642        2233332222    246666677789999999999999987644


Q ss_pred             HHhhcccCCceEEEeCCC-------CHHHHHHhhcC--CCceEEEEeCCCCCCccccc---HHHHHHHHHhcCCEEEEeC
Q 012296          266 IETVLPKMGITATVIDPA-------DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDG  333 (466)
Q Consensus       266 ~~~~l~~~Gi~v~~vd~~-------Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d---l~~Ia~la~~~gillIvDe  333 (466)
                      +    +..|.++..++..       |.+++.+.+..  .+++++++.+|+||||.+++   +++|.++|+++++++|.|+
T Consensus       138 ~----~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De  213 (397)
T d3tata_         138 F----AGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDI  213 (397)
T ss_dssp             H----HTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECB
T ss_pred             H----HHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeeh
Confidence            3    4567776666532       45666655432  24789999999999999986   6789999999999999999


Q ss_pred             CCCCCCccc-----cc----cc-CCcEEEECCccccCccccceeEEEEeCHHHH
Q 012296          334 TFATPLNQK-----AL----SL-GADLVLHSATKFIGGHNDVLAGSISGSGKLV  377 (466)
Q Consensus       334 a~a~~~~~~-----~l----~~-gaDivv~S~sK~lgg~gdv~gG~ivg~~eli  377 (466)
                      +|.......     ..    .. ..-+++.|+||.++.+|++ .|++++...++
T Consensus       214 ~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R-iG~~~~~~~~~  266 (397)
T d3tata_         214 AYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGER-VGGLSVMCEDA  266 (397)
T ss_dssp             SCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTC-CBCCEEECSST
T ss_pred             hhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCcc-ccccccchhHH
Confidence            998654311     00    11 1248899999999998865 67766655443

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.59  E-value=1.6e-14  Score=145.85  Aligned_cols=214  Identities=18%  Similarity=0.224  Sum_probs=154.5

Q ss_pred             CchhHHHHH----HHHHhhhCCCcE-EEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhccc--CCceEEE-
Q 012296          208 GNPTTVVVE----EKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK--MGITATV-  279 (466)
Q Consensus       208 ~np~~~~Le----e~LA~l~g~e~~-l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~--~Gi~v~~-  279 (466)
                      +....+++|    ++..++++++.+ +-..||+.|+.+++.++++|||+|+..+..+++....-. ....  ...++.. 
T Consensus        63 G~~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~-~~~~~g~~~~~~~y  141 (405)
T d1kl1a_          63 GCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGS-PVNFSGVQYNFVAY  141 (405)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-TTSHHHHHSEEEEE
T ss_pred             CchhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHHHHHHhcCCCCEEEEeecccccccccCc-cccccceEEEEEEe
Confidence            566777766    555678898754 445799999999999999999999999887777321100 0000  1123222 


Q ss_pred             -eC----CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCC-----CCCcccccccCCc
Q 012296          280 -ID----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA-----TPLNQKALSLGAD  349 (466)
Q Consensus       280 -vd----~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a-----~~~~~~~l~~gaD  349 (466)
                       +|    ..|.+++++.++..++++|++..-.  .....|++++.++|++.|++|++|.++-     .+...+|++. +|
T Consensus       142 ~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~-aD  218 (405)
T d1kl1a_         142 GVDPETHVIDYDDVREKARLHRPKLIVAAASA--YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY-AH  218 (405)
T ss_dssp             CBCTTTCSBCHHHHHHHHHHHCCSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT-CS
T ss_pred             ccchhcccccHHHHHHHHHhhCcceEEecccc--cccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhh-hh
Confidence             22    2489999998887779999985554  3467799999999999999999999953     4566888865 89


Q ss_pred             EEEECCccccCccccceeEEEEeCHHHHHHHHHHHH--HhCCCchHHHHHHHH---Hh-hHHHHHHHHHHHHHHHHHHHH
Q 012296          350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLII---RG-MKTLHLRVQQQNSTALRMAKI  423 (466)
Q Consensus       350 ivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~--~~G~~lsp~~a~l~l---~~-L~tl~~R~~~~~~na~~La~~  423 (466)
                      +|..|+||+|.||   .||+|+.++++.+++.+...  ..|+......|.++.   .. ........++..+|++.|++.
T Consensus       219 vvt~tThKtlrGP---rgg~I~~~~~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~  295 (405)
T d1kl1a_         219 FVTTTTHKTLRGP---RGGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASA  295 (405)
T ss_dssp             EEEEESSSTTCCC---SCEEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             heeccccccccCC---CCceEEecchhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999   49999999998888766432  233333222222221   11 234566778889999999999


Q ss_pred             HHcCC
Q 012296          424 LEAHP  428 (466)
Q Consensus       424 L~~~p  428 (466)
                      |.+..
T Consensus       296 L~~~G  300 (405)
T d1kl1a_         296 LQNEG  300 (405)
T ss_dssp             HHHTT
T ss_pred             HhcCC
Confidence            99874

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=5.4e-14  Score=140.37  Aligned_cols=213  Identities=14%  Similarity=0.103  Sum_probs=146.6

Q ss_pred             HHHHHHHHhhhCC-----Cc-EEEeCCHHHHHHHHHHHHc---cCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC-
Q 012296          213 VVVEEKMSALEGA-----ES-TVIMASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (466)
Q Consensus       213 ~~Lee~LA~l~g~-----e~-~l~~sSGs~Ai~~al~all---~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-  282 (466)
                      +++++.+.++++.     .+ .++++||++++++++.+++   ++||+|++....+.+....  ..+...+..+..+.. 
T Consensus        39 ~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~--~~~~~~~~~~~~~~~~  116 (382)
T d2bkwa1          39 QRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFA--DCLRSYGAQVDVVRPL  116 (382)
T ss_dssp             HHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHH--HHHHHTTCEEEEECCS
T ss_pred             HHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhh--hhcccccccccccccc
Confidence            4455566666553     23 4555788899999999986   6799999988877764322  334455665554431 


Q ss_pred             -----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhc--CCEEEEeCCCCCC-CcccccccCCcEEEEC
Q 012296          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATP-LNQKALSLGADLVLHS  354 (466)
Q Consensus       283 -----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~--gillIvDea~a~~-~~~~~l~~gaDivv~S  354 (466)
                           .+.+.+++++...+++++++.+.+|.+|...|++.+.++|+++  ++++++|.+.+.+ .+.+...+|+|+++.|
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s  196 (382)
T d2bkwa1         117 KIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTA  196 (382)
T ss_dssp             STTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEE
T ss_pred             CCCCccchhHHHHHhhhccchheeeeeccccccccccchhhhhhccccccceeeeeecccccccccccccccCeeEEeec
Confidence                 3577777777655689999999999999999999999998876  5999999997764 4466677899999999


Q ss_pred             CccccCccccceeEEEEeCHHHHHHHHHHHHH--------------------------hCCCchHHHHHHHHHhhHHH--
Q 012296          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--------------------------LGGALNPNAAYLIIRGMKTL--  406 (466)
Q Consensus       355 ~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~--------------------------~G~~lsp~~a~l~l~~L~tl--  406 (466)
                      .+|+++||.  ..|+++.++++++++......                          +..+.+....+.+...++.+  
T Consensus       197 ~~K~l~gP~--G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~  274 (382)
T d2bkwa1         197 SQKAIGAPA--GLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILE  274 (382)
T ss_dssp             SSSTTCCCS--CEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             ccccCcCCC--chhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHH
Confidence            999997665  368899999887665321110                          11223333333333344443  


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHcCCC
Q 012296          407 ---HLRVQQQNSTALRMAKILEAHPK  429 (466)
Q Consensus       407 ---~~R~~~~~~na~~La~~L~~~p~  429 (466)
                         ..+.+++.+.++.+.+.+.+...
T Consensus       275 ~g~~~~~~~~~~l~~~l~~~l~~~~~  300 (382)
T d2bkwa1         275 EGLHKRWDLHREMSDWFKDSLVNGLQ  300 (382)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hhhhhhHHHHHHHHHHHHHHhhhccc
Confidence               34556666777788888776543

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=3.2e-14  Score=144.11  Aligned_cols=214  Identities=18%  Similarity=0.183  Sum_probs=153.0

Q ss_pred             CchhHHHHH----HHHHhhhCCCc-EEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCC--ceEEEe
Q 012296          208 GNPTTVVVE----EKMSALEGAES-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG--ITATVI  280 (466)
Q Consensus       208 ~np~~~~Le----e~LA~l~g~e~-~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~G--i~v~~v  280 (466)
                      +....+++|    ++..+++|++. .+-..||+.|+.+++.++++|||+|+..+..+++....-. .....|  .+....
T Consensus        66 G~~~iD~iE~la~~ra~~lF~a~~anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~-~~~~~g~~~~~~~y  144 (416)
T d1dfoa_          66 GCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGS-PVNFSGKLYNIVPY  144 (416)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTC-TTSHHHHHSEEEEE
T ss_pred             CChhHHHHHHHHHHHHHHHhCCCcceeecccCccHHHHHHHHhcCCCCeeeeccccccccccccc-cccccCceEEEEec
Confidence            456666665    55566899865 4456899999999999999999999999999888432110 000011  122211


Q ss_pred             --C---CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCC-----CCcccccccCCcE
Q 012296          281 --D---PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT-----PLNQKALSLGADL  350 (466)
Q Consensus       281 --d---~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~-----~~~~~~l~~gaDi  350 (466)
                        |   ..|.+++++..+..++|+|++..-.  .....|++++.++|++.|++|++|.++-.     +...+|+.. +|+
T Consensus       145 ~~d~~~~IDyd~l~~~a~~~kPklIi~G~S~--y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~-aDv  221 (416)
T d1dfoa_         145 GIDATGHIDYADLEKQAKEHKPKMIIGGFSA--YSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH-AHV  221 (416)
T ss_dssp             CBCSSSSBCHHHHHHHHHHHCCSEEEEECSS--CCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT-SSE
T ss_pred             ccCCccCccHHHHHHHHHHhccceEEecccc--cccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc-cce
Confidence              2   3489999988877679999986544  45788999999999999999999999543     556788887 699


Q ss_pred             EEECCccccCccccceeEEEEeC---HHHHHHHHHHHH--HhCCCchHHHHHHH---HHhh-HHHHHHHHHHHHHHHHHH
Q 012296          351 VLHSATKFIGGHNDVLAGSISGS---GKLVTQIRNLHH--VLGGALNPNAAYLI---IRGM-KTLHLRVQQQNSTALRMA  421 (466)
Q Consensus       351 vv~S~sK~lgg~gdv~gG~ivg~---~eli~~l~~~~~--~~G~~lsp~~a~l~---l~~L-~tl~~R~~~~~~na~~La  421 (466)
                      |..|+||+|.||   .||+|+.+   +++.+++.+...  ..|+......|..+   ...+ ..+....++..+|++.|+
T Consensus       222 vt~tThKtlrGP---rggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La  298 (416)
T d1dfoa_         222 VTTTTHKTLAGP---RGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMV  298 (416)
T ss_dssp             EEEESSSTTCCC---SCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred             eeeehhhcccCC---CceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            999999999999   48999986   577777765332  23433333222222   1222 245667788899999999


Q ss_pred             HHHHcCC
Q 012296          422 KILEAHP  428 (466)
Q Consensus       422 ~~L~~~p  428 (466)
                      +.|.+..
T Consensus       299 ~~L~~~G  305 (416)
T d1dfoa_         299 EVFLERG  305 (416)
T ss_dssp             HHHHHTT
T ss_pred             HHHHhCC
Confidence            9999874

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=2.7e-14  Score=147.40  Aligned_cols=222  Identities=16%  Similarity=0.085  Sum_probs=146.0

Q ss_pred             CCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCEEEEc--------CCCCcchHHHHHhhcc
Q 012296          200 ASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTT--------TDCYRKTRIFIETVLP  271 (466)
Q Consensus       200 ~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~Vlv~--------~~~y~~t~~~~~~~l~  271 (466)
                      +...|+  ++|+..+||+++++++|.+.+++++||++|+..++.+++++||.++..        ...|..+...   ...
T Consensus        66 gd~~Y~--~~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~---~~~  140 (467)
T d2v1pa1          66 GDEAFS--GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQG---HSQ  140 (467)
T ss_dssp             CCCCSS--SCHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHH---HHH
T ss_pred             cchhhc--CCchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHH---HHH
Confidence            345677  589999999999999999999999999999999999998877654332        2333332211   123


Q ss_pred             cCCceEEEeC---------------CCCHHHHHHhhcCC---CceEEEEeCCCCCCc-ccc---cHHHHHHHHHhcCCEE
Q 012296          272 KMGITATVID---------------PADMEGLEAALNNN---NVSLFFTESPTNPFL-RCV---DVKLVSDLCHKKGAIV  329 (466)
Q Consensus       272 ~~Gi~v~~vd---------------~~Dle~Le~ai~~~---~tklV~lesP~NPtG-~v~---dl~~Ia~la~~~gill  329 (466)
                      ..|..+..++               ..|+++|++.+++.   .+++|+++.++|..| .+.   ++++|.++|++||++|
T Consensus       141 ~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l  220 (467)
T d2v1pa1         141 INGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPV  220 (467)
T ss_dssp             HTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCE
T ss_pred             HcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEE
Confidence            3466665553               13688999888632   368899999888664 444   5789999999999999


Q ss_pred             EEeCCCCCC-----------Cc-ccc------cccCCcEEEECCccccCccccceeEEEEeCHHHHH-HHHHHH---HHh
Q 012296          330 CIDGTFATP-----------LN-QKA------LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLH---HVL  387 (466)
Q Consensus       330 IvDea~a~~-----------~~-~~~------l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~-~l~~~~---~~~  387 (466)
                      |+|++...+           +. ...      .-..+|++..|.+|.++++.   ||+++.+++.+. ..+..+   ...
T Consensus       221 ~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~---gg~i~~~~~~~~~~~~~~~~~~~~~  297 (467)
T d2v1pa1         221 VMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM---GGLLCMKDDSFFDVYTECRTLCVVQ  297 (467)
T ss_dssp             EEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSS---CEEEEECSGGGHHHHHHHHHHHHHT
T ss_pred             EEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCC---ceeEEecchhhhhHHHhhccccccc
Confidence            999995321           00 000      11237999999999998874   788888765433 222211   111


Q ss_pred             -C----CCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012296          388 -G----GALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPK  429 (466)
Q Consensus       388 -G----~~lsp~~a~l~l~--~L~tl~~R~~~~~~na~~La~~L~~~p~  429 (466)
                       +    .......+.....  .+......+++..++++++.+.|++...
T Consensus       298 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  346 (467)
T d2v1pa1         298 EGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGV  346 (467)
T ss_dssp             TSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence             1    1222222222222  2222345667777899999999988643

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.9e-13  Score=135.47  Aligned_cols=218  Identities=17%  Similarity=0.141  Sum_probs=147.5

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc----------CCCEEEEcCCCCcch-HHHH--------H
Q 012296          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP----------AGGHIVTTTDCYRKT-RIFI--------E  267 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~----------~Gd~Vlv~~~~y~~t-~~~~--------~  267 (466)
                      +.++....+++.++++.+.+.+.+.+||++|+..++.....          ...+++.....|++. ...+        .
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~  159 (404)
T d2byla1          80 FYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSY  159 (404)
T ss_dssp             EEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHH
T ss_pred             cccchHHHHHHhhhhcccccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccc
Confidence            34567788899999999999999999999999998875421          224677777777652 2111        1


Q ss_pred             hhcccCCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC-----
Q 012296          268 TVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-----  338 (466)
Q Consensus       268 ~~l~~~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~-----  338 (466)
                      ..+......+..++..|++++++++.+.++.+|++|......|...+    +++|.++|++||+++|+||++...     
T Consensus       160 ~~~~p~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~  239 (404)
T d2byla1         160 DGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR  239 (404)
T ss_dssp             TTSCSCCTTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS
T ss_pred             cCCCCCCCCeeEecccCHHHHHHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccc
Confidence            11112223456678889999999998766899999988777776654    899999999999999999996431     


Q ss_pred             -CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHH--HHHHHHH
Q 012296          339 -LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNS  415 (466)
Q Consensus       339 -~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~~--R~~~~~~  415 (466)
                       +.......-+||++  ++|.++++. ...|.+++++++.+.+..........-+|..+.+++..|+.++.  -+++..+
T Consensus       240 ~~a~~~~gv~PDi~~--~gK~l~gG~-~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~  316 (404)
T d2byla1         240 WLAVDYENVRPDIVL--LGKALSGGL-YPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADK  316 (404)
T ss_dssp             SSGGGGGTCCCSEEE--ECGGGGTTS-SCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             cchhhhcCCCCCEEE--ECchhhCCC-ccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhH
Confidence             11222333468885  789998753 35788889998877654322111112357777776666766643  2344445


Q ss_pred             HHHHHHHHHHcC
Q 012296          416 TALRMAKILEAH  427 (466)
Q Consensus       416 na~~La~~L~~~  427 (466)
                      ..+.+.+.|++.
T Consensus       317 ~g~~l~~~l~~l  328 (404)
T d2byla1         317 LGIILRNELMKL  328 (404)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             hhHHHHHHHHhh
Confidence            555666666654

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.51  E-value=3.1e-13  Score=140.48  Aligned_cols=225  Identities=16%  Similarity=0.145  Sum_probs=151.2

Q ss_pred             CchhHHHHH----HHHHhhhCCC-----------cEEEeCCHHHHHHHHHHHHcc----------CC---------CEEE
Q 012296          208 GNPTTVVVE----EKMSALEGAE-----------STVIMASGMSASTVMLLALVP----------AG---------GHIV  253 (466)
Q Consensus       208 ~np~~~~Le----e~LA~l~g~e-----------~~l~~sSGs~Ai~~al~all~----------~G---------d~Vl  253 (466)
                      ..|....+|    ++|++++|.+           ..+++++|+.|+..++.+...          .|         -.|+
T Consensus       107 ~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~  186 (476)
T d1js3a_         107 ASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAY  186 (476)
T ss_dssp             GCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEE
T ss_pred             hhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEE
Confidence            345555554    5566777653           357888888888777754321          11         1477


Q ss_pred             EcCCCCcchHHHHHhhcccCCceEEEeCC-----CCHHHHHHhhcCC-----CceEEEEeCCCCCCcccccHHHHHHHHH
Q 012296          254 TTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCH  323 (466)
Q Consensus       254 v~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~Dle~Le~ai~~~-----~tklV~lesP~NPtG~v~dl~~Ia~la~  323 (466)
                      +++..|.+....    +...|+.+..++.     .|+++|+++|++.     .+-+|+....++.+|.+.|+++|+++|+
T Consensus       187 ~s~~~H~Si~ka----~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~  262 (476)
T d1js3a_         187 ASDQAHSSVERA----GLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICH  262 (476)
T ss_dssp             EETTCCHHHHHH----HHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred             ecccccHHHHHH----HHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHH
Confidence            888888876543    3345666666653     3799999998643     2457777888899999999999999999


Q ss_pred             hcCCEEEEeCCCCCCCccc----ccc---cCCcEEEECCccccCccccceeEEEEeCH-HHHHHH--------HHHHHH-
Q 012296          324 KKGAIVCIDGTFATPLNQK----ALS---LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQI--------RNLHHV-  386 (466)
Q Consensus       324 ~~gillIvDea~a~~~~~~----~l~---~gaDivv~S~sK~lgg~gdv~gG~ivg~~-eli~~l--------~~~~~~-  386 (466)
                      ++|++++||++|+......    ..-   ..+|.+..++||+++.+.  .+|+++.++ ......        ...... 
T Consensus       263 ~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~--~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~  340 (476)
T d1js3a_         263 EEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF--DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS  340 (476)
T ss_dssp             HTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS--SCEEEEESCHHHHHGGGC------------C
T ss_pred             hcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCC--cceeecccchHHHHHHHhcChhhhccccccc
Confidence            9999999999987643211    111   148999999999999987  356665553 332211        100000 


Q ss_pred             --------h----CCCchHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCC
Q 012296          387 --------L----GGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL  438 (466)
Q Consensus       387 --------~----G~~lsp~~a~l~l~--~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V~yPgl  438 (466)
                              +    +-....+..|+.++  |.+-+..++++..++++++++.|+++|.++-+..|.+
T Consensus       341 ~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l  406 (476)
T d1js3a_         341 GLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTL  406 (476)
T ss_dssp             CSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCS
T ss_pred             cccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCce
Confidence                    0    11122345566554  5566888899999999999999999999876655654

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.50  E-value=4.8e-13  Score=132.49  Aligned_cols=169  Identities=15%  Similarity=0.193  Sum_probs=127.8

Q ss_pred             chhHHHHHHHHHhhhCCC--cEEEe-CCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC----
Q 012296          209 NPTTVVVEEKMSALEGAE--STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID----  281 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e--~~l~~-sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd----  281 (466)
                      ....+++++.|++++|.+  ..+++ ++|+.++.+++..++.+|+++++....|.+..  ........+.....+.    
T Consensus        50 ~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  127 (377)
T d1vjoa_          50 LALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNR--LVDMAGRYGADVRTISKPWG  127 (377)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhccccccccceeeechhhhh--hhhhhhhhcccccccccCCC
Confidence            355678899999999973  46666 56779999999999999999999888877632  2233344444433332    


Q ss_pred             -CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC-CcccccccCCcEEEECCcccc
Q 012296          282 -PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFI  359 (466)
Q Consensus       282 -~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~-~~~~~l~~gaDivv~S~sK~l  359 (466)
                       ..+.+..+....+.+++++.+.+.+|.+|.+.|+++|.++||++|+++++|.+++.+ ...+...+++|+++.|.+|++
T Consensus       128 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~  207 (377)
T d1vjoa_         128 EVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGL  207 (377)
T ss_dssp             CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTT
T ss_pred             CcccchhhhhhhhcCcceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhcccccccceeeecccccc
Confidence             223444444443334899999999999999999999999999999999999998765 445667789999999999999


Q ss_pred             CccccceeEEEEeCHHHHHHHH
Q 012296          360 GGHNDVLAGSISGSGKLVTQIR  381 (466)
Q Consensus       360 gg~gdv~gG~ivg~~eli~~l~  381 (466)
                      +|++  .+|+++.+++.++...
T Consensus       208 ~gp~--g~~~~~~~~~~~~~~~  227 (377)
T d1vjoa_         208 GCSP--GASPFTMSSRAIEKLQ  227 (377)
T ss_dssp             CSCS--SCEEEEECHHHHHHHH
T ss_pred             cCCC--EEEEecchhhHHhhhh
Confidence            8887  4688888887776543

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.48  E-value=2.3e-12  Score=130.36  Aligned_cols=234  Identities=15%  Similarity=0.154  Sum_probs=157.0

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHH--ccCCCEEEEcCCCCcchHHHH---------HhhcccC
Q 012296          207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFI---------ETVLPKM  273 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~al--l~~Gd~Vlv~~~~y~~t~~~~---------~~~l~~~  273 (466)
                      +.++...++.+.+.+....  +.+.+++||++|+..+++..  ......|+.....|++.....         .......
T Consensus        76 ~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~  155 (387)
T d1vefa1          76 LPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPL  155 (387)
T ss_dssp             SCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSC
T ss_pred             cCCchHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCC
Confidence            3567777777777776554  45778899999999988754  234568888888887732111         1111112


Q ss_pred             CceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC------Ccccc
Q 012296          274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------LNQKA  343 (466)
Q Consensus       274 Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~------~~~~~  343 (466)
                      .-.+.+++..|++.|++.++++ +.+|++|......|...+    +++|.++|+++|+++|.||++.+.      .....
T Consensus       156 ~~~~~~~p~~d~~~l~~~~~~~-iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~  234 (387)
T d1vefa1         156 VEPVEFIPYNDVEALKRAVDEE-TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEH  234 (387)
T ss_dssp             SSCEEEECTTCHHHHHHHCCTT-EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHH
T ss_pred             CCCceEeCCCCHHHHHHhcCCC-eEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCccccc
Confidence            2346667888999999999875 999999887766676654    899999999999999999996532      11223


Q ss_pred             cccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCC--chHHHHHHHHHhhHHHHH--HHHHHHHHHHH
Q 012296          344 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA--LNPNAAYLIIRGMKTLHL--RVQQQNSTALR  419 (466)
Q Consensus       344 l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~--lsp~~a~l~l~~L~tl~~--R~~~~~~na~~  419 (466)
                      ....+|+++  ++|.++++-  ..+.+++.+++++.+....  .|.+  -+|..+.+++..|+.+..  ..++..+..++
T Consensus       235 ~~v~PDi~~--~gK~l~gG~--~~~~~~~~~~~~~~~~~~~--~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~  308 (387)
T d1vefa1         235 FGIVPDILT--LAKALGGGV--PLGVAVMREEVARSMPKGG--HGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPW  308 (387)
T ss_dssp             HTCCCSEEE--ECGGGGTTS--SCEEEEEEHHHHHTSCTTS--SCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             CCcCCceee--ecccCCCCc--cccccccceeeeeccccCC--ccccCCCCcchhhhcccchhhcccccccchHhhhhHH
Confidence            344578888  679998753  4566677777765543221  2333  367877777777766642  23455566667


Q ss_pred             HHHHHHcC--CCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEeccC
Q 012296          420 MAKILEAH--PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVLME  465 (466)
Q Consensus       420 La~~L~~~--p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~~~  465 (466)
                      +.+.|++.  +.|..                  .+|.|.|++|+++++
T Consensus       309 l~~~L~~l~~~~v~~------------------vrg~Gl~~~ie~~~~  338 (387)
T d1vefa1         309 FMEKLRAIPSPKIRE------------------VRGMGLMVGLELKEK  338 (387)
T ss_dssp             HHHHHHTSCCTTEEE------------------EEEETTEEEEEESSC
T ss_pred             HHHHHHhcCCCceEE------------------EeecceEEEEEEeCC
Confidence            77777754  33333                  367788888888654

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=4.8e-13  Score=138.07  Aligned_cols=218  Identities=11%  Similarity=-0.068  Sum_probs=148.1

Q ss_pred             chhHHHH----HHHHHhhhCCC-------cEEEeCCHHHHHHHHHHHHcc-----------CC-CEEEEcCCCCcchHHH
Q 012296          209 NPTTVVV----EEKMSALEGAE-------STVIMASGMSASTVMLLALVP-----------AG-GHIVTTTDCYRKTRIF  265 (466)
Q Consensus       209 np~~~~L----ee~LA~l~g~e-------~~l~~sSGs~Ai~~al~all~-----------~G-d~Vlv~~~~y~~t~~~  265 (466)
                      .|...++    .+.|++++|.+       ..+++++|++|+.+++.+...           .+ ..++++...|.+..  
T Consensus        88 ~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~--  165 (450)
T d1pmma_          88 YPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWH--  165 (450)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHH--
T ss_pred             CccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHH--
Confidence            3555555    45788888852       268888889888887765421           12 24667666666544  


Q ss_pred             HHhhcccCCceEEEeCC------CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHH------HhcCCEEEEeC
Q 012296          266 IETVLPKMGITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLC------HKKGAIVCIDG  333 (466)
Q Consensus       266 ~~~~l~~~Gi~v~~vd~------~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la------~~~gillIvDe  333 (466)
                        +.+..+|++++.++.      .|+++|+++++++ |.+|+....+|.||.+.|+++|.++|      +++|++++||+
T Consensus       166 --Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~~-t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDA  242 (450)
T d1pmma_         166 --KFARYWDVELREIPMRPGQLFMDPKRMIEACDEN-TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDA  242 (450)
T ss_dssp             --HHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTT-EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_pred             --HHHHHcCCCceEeeecCCCCcCcHHHHHHHhhhC-ceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeeh
Confidence              445567888887753      3799999999986 99999999999999999998887775      56899999999


Q ss_pred             CCCCCCc-cc-cc------ccCCcEEEECCccccCccccceeEEEEeCH-HHHHHHHHHH-HHhC----------CC--c
Q 012296          334 TFATPLN-QK-AL------SLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLH-HVLG----------GA--L  391 (466)
Q Consensus       334 a~a~~~~-~~-~l------~~gaDivv~S~sK~lgg~gdv~gG~ivg~~-eli~~l~~~~-~~~G----------~~--l  391 (466)
                      +++.+.. .. +.      -.++|.+..|.|||++++-  .+|+++.++ ++........ ...|          ..  .
T Consensus       243 A~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~--g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~  320 (450)
T d1pmma_         243 ASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPL--GCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAG  320 (450)
T ss_dssp             TTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCS--SCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSH
T ss_pred             hhccceeeeechhhhhhhcccceeEeecChhhccCCCC--CeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchH
Confidence            9876432 11 11      1268999999999998775  357766653 3322111000 0011          11  1


Q ss_pred             hHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 012296          392 NPNAAYLII--RGMKTLHLRVQQQNSTALRMAKILEAHPKVKRV  433 (466)
Q Consensus       392 sp~~a~l~l--~~L~tl~~R~~~~~~na~~La~~L~~~p~V~~V  433 (466)
                      .....|..+  .+.+.+...+++..++++++.+.|+++|.++.+
T Consensus       321 ~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~  364 (450)
T d1pmma_         321 QVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFI  364 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            122344433  355667888889999999999999999987644

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.47  E-value=3.8e-12  Score=129.29  Aligned_cols=222  Identities=17%  Similarity=0.199  Sum_probs=141.9

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc----------cCCCEEEEcCCCCcchHHHHHhhccc-----
Q 012296          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV----------PAGGHIVTTTDCYRKTRIFIETVLPK-----  272 (466)
Q Consensus       208 ~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all----------~~Gd~Vlv~~~~y~~t~~~~~~~l~~-----  272 (466)
                      .+.....+++.+..+.+.+.+.++.||++|+..++....          .....++.....|++...........     
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~  158 (404)
T d1z7da1          79 FSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTS  158 (404)
T ss_dssp             EEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC-------------------
T ss_pred             chHHHHHHHHhhhhccccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCccccccccccccccc
Confidence            345567788889999999999999999998888776432          11236777777777632221111000     


Q ss_pred             ----CCceEEEeCCCCHHHHHHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCC------
Q 012296          273 ----MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------  338 (466)
Q Consensus       273 ----~Gi~v~~vd~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~------  338 (466)
                          .-..+..++..+.+.++..+.+.++.+|++|......|.+.+    +++|.++|+++|+++|+||++.+.      
T Consensus       159 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~  238 (404)
T d1z7da1         159 NFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKL  238 (404)
T ss_dssp             -------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred             CCCCCCccccccccchHHHHHHHhcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCccccc
Confidence                001233445667889988887766899999998877787776    899999999999999999996421      


Q ss_pred             CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCC--CchHHHHHHHHHhhHHHHH-----HHH
Q 012296          339 LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG--ALNPNAAYLIIRGMKTLHL-----RVQ  411 (466)
Q Consensus       339 ~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~--~lsp~~a~l~l~~L~tl~~-----R~~  411 (466)
                      ........-+||++  ++|.++++. ..+|++++++++++.++...  .+.  .-+|..+.+++..|+.+..     ++.
T Consensus       239 ~~~e~~gv~PDivt--~gK~l~gG~-~p~~~v~~~~~i~~~~~~~~--~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~  313 (404)
T d1z7da1         239 LCVHHYNVKPDVIL--LGKALSGGH-YPISAVLANDDIMLVIKPGE--HGSTYGGNPLAASICVEALNVLINEKLCENAE  313 (404)
T ss_dssp             SGGGGGTCCCSEEE--ECGGGGTTS-SCCEEEEECHHHHTTCCTTC--CCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             ccccccCCCCCEEE--EcccccCCC-CCcccccchHHHHccCCCCC--cCcCCCCCcchhhhhhhhhhhhhcchhhhhhc
Confidence            11233344578886  789998753 35788899999887654332  222  2367777666655554321     222


Q ss_pred             H-HHHHHHHHHHHHHcCCCeEEEe
Q 012296          412 Q-QNSTALRMAKILEAHPKVKRVH  434 (466)
Q Consensus       412 ~-~~~na~~La~~L~~~p~V~~V~  434 (466)
                      + .....+.+.+.+++++.|..|+
T Consensus       314 ~~~~~~~~~l~~~~~~~~~v~~vr  337 (404)
T d1z7da1         314 KLGGPFLENLKRELKDSKIVRDVR  337 (404)
T ss_dssp             HHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred             cchhHHHHHHHHHHhcCCCeEEEE
Confidence            2 2223345566667788877663

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.46  E-value=2.8e-12  Score=127.81  Aligned_cols=166  Identities=12%  Similarity=0.082  Sum_probs=124.5

Q ss_pred             hhHHHHHHHHHhhhCCC-c-EEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCC--CH
Q 012296          210 PTTVVVEEKMSALEGAE-S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--DM  285 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e-~-~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~--Dl  285 (466)
                      ...++.++.|+++++.+ + .++.+||+.++.+++..++.+||++++....+.+..  +...+++++..+...+..  +.
T Consensus        33 ~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~~--~~~~a~~~~~~~~~~~~~~g~~  110 (348)
T d1iuga_          33 EVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDT  110 (348)
T ss_dssp             HHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcccccccceeecchHHHHH--HHHHHHhcCcccccccccCCCc
Confidence            44667788899999874 3 445578889999999999999999988887766633  234567777776665422  11


Q ss_pred             HHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcC--CEEEEeCCCCCC-CcccccccCCcEEEECCccccCcc
Q 012296          286 EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG--AIVCIDGTFATP-LNQKALSLGADLVLHSATKFIGGH  362 (466)
Q Consensus       286 e~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~g--illIvDea~a~~-~~~~~l~~gaDivv~S~sK~lgg~  362 (466)
                      ..+++..+. ++++|++.+..+.+|.+.|+++|.++|++++  .++++|.+.+.+ ...+...+++|+++.|.+|+++|+
T Consensus       111 ~~~~~~~~~-~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gp  189 (348)
T d1iuga_         111 PRPEDVAKE-GYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCP  189 (348)
T ss_dssp             CCTTTSCCS-SCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCC
T ss_pred             ccccccccc-CCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcccccccccccccCCEEEeccccceecC
Confidence            122222233 4889999888889999999999999999874  799999987654 345666779999999999999666


Q ss_pred             ccceeEEEEeCHHHHHHH
Q 012296          363 NDVLAGSISGSGKLVTQI  380 (466)
Q Consensus       363 gdv~gG~ivg~~eli~~l  380 (466)
                      .  ..|+++.+++.++++
T Consensus       190 p--G~~~v~~s~~~le~~  205 (348)
T d1iuga_         190 P--GLGFVALSPRALERL  205 (348)
T ss_dssp             S--CEEEEEECHHHHHTC
T ss_pred             C--ceeeeeechHHHhhh
Confidence            5  358888888877653

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.45  E-value=5.7e-13  Score=136.35  Aligned_cols=207  Identities=17%  Similarity=0.123  Sum_probs=138.7

Q ss_pred             HHHHHhhhCCCc-----EEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHH--Hh--hcccCCceEE--Ee--CC
Q 012296          216 EEKMSALEGAES-----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFI--ET--VLPKMGITAT--VI--DP  282 (466)
Q Consensus       216 ee~LA~l~g~e~-----~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~--~~--~l~~~Gi~v~--~v--d~  282 (466)
                      .++..++++++.     .+=.-||+.|+.+++.++++|||+|+..+..+++....-  ..  .....|+-..  .+  +.
T Consensus        79 ~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~  158 (463)
T d2a7va1          79 QRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP  158 (463)
T ss_dssp             HHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCT
T ss_pred             HHHHHHHhCCCchhccCCccccccHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccC
Confidence            466777899864     466689999999999999999999998888777643111  00  0111122111  11  21


Q ss_pred             ----CCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCC-----CCCCcccccccCCcEEEE
Q 012296          283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-----ATPLNQKALSLGADLVLH  353 (466)
Q Consensus       283 ----~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~-----a~~~~~~~l~~gaDivv~  353 (466)
                          .|.+++++..+..++++|++..-..  ....|++++.++|++.|++|++|.++     +.+...+|+.. +|+|..
T Consensus       159 ~~~~IDyd~~~~~a~~~kPklIi~G~S~y--~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~-aDvvt~  235 (463)
T d2a7va1         159 KTGLIDYNQLALTARLFRPRLIIAGTSAY--ARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTT  235 (463)
T ss_dssp             TTCSBCHHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEE
T ss_pred             CCCcCcHHHHHHHHhhcCCceEEeccccc--ccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhh-hhhhhc
Confidence                3899999988877799999865543  46779999999999999999999994     44667889876 799999


Q ss_pred             CCccccCccccceeEEEEeCH---------------HHHHHHHHHHH--HhCCCchHHHHHHHH---Hhh-HHHHHHHHH
Q 012296          354 SATKFIGGHNDVLAGSISGSG---------------KLVTQIRNLHH--VLGGALNPNAAYLII---RGM-KTLHLRVQQ  412 (466)
Q Consensus       354 S~sK~lgg~gdv~gG~ivg~~---------------eli~~l~~~~~--~~G~~lsp~~a~l~l---~~L-~tl~~R~~~  412 (466)
                      |+||+|.||   .||+|..++               ++.+++.....  ..|+......|.++.   ..+ .......++
T Consensus       236 tTHKTlrGP---rgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~q  312 (463)
T d2a7va1         236 TTHKTLRGA---RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQ  312 (463)
T ss_dssp             ESSGGGCSC---SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             hhhhhhcCC---CceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHH
Confidence            999999999   489999875               55666665332  233333222222221   112 246677888


Q ss_pred             HHHHHHHHHHHHHcCC
Q 012296          413 QNSTALRMAKILEAHP  428 (466)
Q Consensus       413 ~~~na~~La~~L~~~p  428 (466)
                      ..+|++.|++.|.+..
T Consensus       313 Vv~NAk~La~~L~~~G  328 (463)
T d2a7va1         313 VLKNARAMADALLERG  328 (463)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            9999999999999874

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.44  E-value=4.6e-13  Score=137.45  Aligned_cols=214  Identities=17%  Similarity=0.114  Sum_probs=149.8

Q ss_pred             CchhHHHHHHHH----HhhhCCC-----cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhc--ccC---
Q 012296          208 GNPTTVVVEEKM----SALEGAE-----STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL--PKM---  273 (466)
Q Consensus       208 ~np~~~~Lee~L----A~l~g~e-----~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l--~~~---  273 (466)
                      +....+++|...    .++++.+     ..+=..||+.|+.+++.++++|||+|+..+..+++....- ...  ...   
T Consensus        71 G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg-~~~~~~~~~~~  149 (470)
T d1rv3a_          71 GTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHG-FMTDKKKISAT  149 (470)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGC-CBCSSCBCSHH
T ss_pred             CchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhcCCCCeEeeeccccCCccccc-ccccCCCcccc
Confidence            567777776554    7788875     2344579999999999999999999999887776632110 000  000   


Q ss_pred             --CceEEEe--C----CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCC-----CCCc
Q 012296          274 --GITATVI--D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA-----TPLN  340 (466)
Q Consensus       274 --Gi~v~~v--d----~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a-----~~~~  340 (466)
                        ..+....  +    ..|.+++++..+..++++|++..-.+  ....|++++.++|++.|++|++|.++-     ++..
T Consensus       150 ~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G~S~y--~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~  227 (470)
T d1rv3a_         150 SIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY--SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVV  227 (470)
T ss_dssp             HHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSS
T ss_pred             cceeEeeEEEEecccCcccHHHHHHHHHhhCcceEeechhhc--cccCCHHHHHHHHhccCCeEEecchhhhhhcccccc
Confidence              1122222  2    23889999988776799999965553  467799999999999999999999953     3567


Q ss_pred             ccccccCCcEEEECCccccCccccceeEEEEeCHH---------------HHHHHHHHHH--HhCCCc-hHHHHHHH--H
Q 012296          341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------------LVTQIRNLHH--VLGGAL-NPNAAYLI--I  400 (466)
Q Consensus       341 ~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~e---------------li~~l~~~~~--~~G~~l-sp~~a~l~--l  400 (466)
                      .+|+.. +|+|+.|+||+|.||   .||+|..+++               +.+++.....  ..|+.. ...++.+.  .
T Consensus       228 ~sPl~~-aDvvt~tTHKtlrGP---rgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~  303 (470)
T d1rv3a_         228 PSPFEH-CHVVTTTTHKTLRGC---RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALK  303 (470)
T ss_dssp             CCGGGT-CSEEEEESSGGGCCC---SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHH
T ss_pred             CChhhe-eeeeeeehhhhccCC---cceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHH
Confidence            889976 799999999999999   4899987653               5566655432  233332 22222211  1


Q ss_pred             Hhh-HHHHHHHHHHHHHHHHHHHHHHcCC
Q 012296          401 RGM-KTLHLRVQQQNSTALRMAKILEAHP  428 (466)
Q Consensus       401 ~~L-~tl~~R~~~~~~na~~La~~L~~~p  428 (466)
                      ..+ .......++..+|++.|++.|.++.
T Consensus       304 ea~~~~fk~Ya~qvv~NAk~La~~L~~~G  332 (470)
T d1rv3a_         304 QAMTPEFKEYQRQVVANCRALSAALVELG  332 (470)
T ss_dssp             HHTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            112 2466677888999999999999874

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.44  E-value=1.9e-12  Score=128.93  Aligned_cols=169  Identities=19%  Similarity=0.217  Sum_probs=130.1

Q ss_pred             chhHHHHHHHHHhhhCCC--cEEEeC-CHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC----
Q 012296          209 NPTTVVVEEKMSALEGAE--STVIMA-SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID----  281 (466)
Q Consensus       209 np~~~~Lee~LA~l~g~e--~~l~~s-SGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd----  281 (466)
                      ....+++++.|+++++.+  ++++++ ||+.++++++.+++.+|+++++....+.+....  ......+.....+.    
T Consensus        49 ~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~  126 (388)
T d2ch1a1          49 FRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAV--EMSERYGADVRTIEGPPD  126 (388)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHH--HHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhccccccccccccccccccch--hhhhhhcccccccccccc
Confidence            355678899999999974  566664 678999999999999999999887777664322  23344454444332    


Q ss_pred             -CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC-CcccccccCCcEEEECCcccc
Q 012296          282 -PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFI  359 (466)
Q Consensus       282 -~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~-~~~~~l~~gaDivv~S~sK~l  359 (466)
                       ..+.+.+++++...+++++++.+.+|.+|...|+++|.++||++|+++++|.+.+.+ ...+..++++|+++.|.+|++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~  206 (388)
T d2ch1a1         127 RPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVL  206 (388)
T ss_dssp             SCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CC
T ss_pred             cccchhhhhhhhccCCcceeeeeecccccccccchhhhcchhccccceeeeeeeecccccccchhccCceEEEEcccccc
Confidence             235566666655445899999999999999999999999999999999999997654 445666789999999999999


Q ss_pred             CccccceeEEEEeCHHHHHHHH
Q 012296          360 GGHNDVLAGSISGSGKLVTQIR  381 (466)
Q Consensus       360 gg~gdv~gG~ivg~~eli~~l~  381 (466)
                      ++++  .+|+++.+++.++.+.
T Consensus       207 ~gp~--G~g~~~~~~~~~~~~~  226 (388)
T d2ch1a1         207 GAPP--GITPISISPKALDVIR  226 (388)
T ss_dssp             CCCS--SCEEEEECHHHHHHHH
T ss_pred             CCCC--eEEEEeccHHHHHhhh
Confidence            9887  4688888888776554

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.38  E-value=4.6e-12  Score=130.05  Aligned_cols=217  Identities=16%  Similarity=0.137  Sum_probs=134.5

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCE-------EEEcCCCCcchHHHHHhhcccCC
Q 012296          202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGH-------IVTTTDCYRKTRIFIETVLPKMG  274 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~g~e~~l~~sSGs~Ai~~al~all~~Gd~-------Vlv~~~~y~~t~~~~~~~l~~~G  274 (466)
                      -.|+  ++|+..+|++.+++++|.+.+++++||++|+.+++..++++|++       ++.... |+.+....   ....|
T Consensus        69 ~~y~--~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~-h~~t~~~~---~~~~g  142 (465)
T d1ax4a_          69 EAYA--GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNF-HFDTTAAH---VELNG  142 (465)
T ss_dssp             CCSS--SCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESS-CCHHHHHH---HHHTT
T ss_pred             hhhc--cChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccc-hhhhhHHH---HHHcC
Confidence            3466  58999999999999999999999999999999999998876543       344333 33322211   11223


Q ss_pred             ceEEEeC---------------CCCHHHHHHhhcC---CCceEEEEeCCCCCCc-ccc---cHHHHHHHHHhcCCEEEEe
Q 012296          275 ITATVID---------------PADMEGLEAALNN---NNVSLFFTESPTNPFL-RCV---DVKLVSDLCHKKGAIVCID  332 (466)
Q Consensus       275 i~v~~vd---------------~~Dle~Le~ai~~---~~tklV~lesP~NPtG-~v~---dl~~Ia~la~~~gillIvD  332 (466)
                      .....+.               ..|+++|+++|++   ..+.+++++.++|..| .+.   ++++|.++|++||++||+|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D  222 (465)
T d1ax4a_         143 CKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMD  222 (465)
T ss_dssp             CEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             CeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEE
Confidence            3333221               1378999998863   2356777777777654 333   4788999999999999999


Q ss_pred             CCCCCCC-----------c-cc------ccccCCcEEEECCccccCccccceeEEEEeCH--HHHHHHHHHHH-HhC---
Q 012296          333 GTFATPL-----------N-QK------ALSLGADLVLHSATKFIGGHNDVLAGSISGSG--KLVTQIRNLHH-VLG---  388 (466)
Q Consensus       333 ea~a~~~-----------~-~~------~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~--eli~~l~~~~~-~~G---  388 (466)
                      +++..+.           . ..      .....+|++..|.+|.+++++   +|+++.++  .+......... ..+   
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~---~g~l~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
T d1ax4a_         223 SARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI---GGLVAIRDNEEIFTLARQRCVPMEGFVT  299 (465)
T ss_dssp             CTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS---CEEEEESSCHHHHHHHHHHHHHHTCSTT
T ss_pred             CcchhhhhcccccccccccccchhhhccccccccceeEeecccCccccc---ceeEeecchHHHHHhhhccccccccCCC
Confidence            9964210           0 00      011126899999999988875   68887764  23333332211 111   


Q ss_pred             -CCchHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHcC
Q 012296          389 -GALNPNAAYLIIRGMKT--LHLRVQQQNSTALRMAKILEAH  427 (466)
Q Consensus       389 -~~lsp~~a~l~l~~L~t--l~~R~~~~~~na~~La~~L~~~  427 (466)
                       ..+.......+...+..  ....+++..++++++.+.|++.
T Consensus       300 ~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~  341 (465)
T d1ax4a_         300 YGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREA  341 (465)
T ss_dssp             TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence             11122111111111111  1334566677888999999875

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.38  E-value=6.5e-11  Score=112.83  Aligned_cols=241  Identities=14%  Similarity=0.055  Sum_probs=141.9

Q ss_pred             ChHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEE-EeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHH
Q 012296          187 KTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV-IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIF  265 (466)
Q Consensus       187 ~~~~~~~~~~~~~~~~~Y~R~~np~~~~Lee~LA~l~g~e~~l-~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~  265 (466)
                      +++.++++.+.. .++..+.+.++..+++|+.+|+++|.+..+ ++++|++|+..++..++..++.+++....+......
T Consensus        16 ~P~v~~A~~~a~-~~~~~~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~~~~~~~~~~~~~~~~~~~~~   94 (345)
T d1v72a1          16 SPEVAQALVKHS-SGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDEC   94 (345)
T ss_dssp             CHHHHHHHHHTT-SSCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSST
T ss_pred             CHHHHHHHHHHh-ccCccccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHHHhcCCccccccccceeeech
Confidence            344444444332 234444457899999999999999997665 458999999999999899999988877776553221


Q ss_pred             HHhhcccCCceEEEeC-----CCCHHHHHHhhcCCC-----c-eEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEE
Q 012296          266 IETVLPKMGITATVID-----PADMEGLEAALNNNN-----V-SLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCI  331 (466)
Q Consensus       266 ~~~~l~~~Gi~v~~vd-----~~Dle~Le~ai~~~~-----t-klV~lesP~NPtG~v~---dl~~Ia~la~~~gillIv  331 (466)
                      . ......+..+..+.     ..+++.+++.+.+..     + ..++...+.|+.+...   +++++.++|+++|+++++
T Consensus        95 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  173 (345)
T d1v72a1          95 G-APEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHM  173 (345)
T ss_dssp             T-HHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             h-hHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeee
Confidence            1 11122244444443     347899999886531     2 2344445556665544   577888899999999999


Q ss_pred             eCCCCCCC--------cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCC--chHHHHHHHHH
Q 012296          332 DGTFATPL--------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA--LNPNAAYLIIR  401 (466)
Q Consensus       332 Dea~a~~~--------~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~--lsp~~a~l~l~  401 (466)
                      |+++....        .........+.++.+..|...+..   ++.+.................+..  .....+.....
T Consensus       174 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~  250 (345)
T d1v72a1         174 DGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAA---EAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDA  250 (345)
T ss_dssp             EETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSC---EEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHH
T ss_pred             cccccceeccccccCHHHhhccccccccccCccccccccc---cccccchhhhhhhccccccccccccchhhHHhhhhHH
Confidence            99964311        111122234455555555444332   333444443333332222222222  22222222222


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 012296          402 --GMKTLHLRVQQQNSTALRMAKILEAHPKVKR  432 (466)
Q Consensus       402 --~L~tl~~R~~~~~~na~~La~~L~~~p~V~~  432 (466)
                        ..........+..++.+.+.+.|.++|++..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  283 (345)
T d1v72a1         251 YLTDDLWLRNARKANAAAQRLAQGLEGLGGVEV  283 (345)
T ss_dssp             HTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhcCCcEe
Confidence              2233344556666778889999999999854

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.30  E-value=1.5e-10  Score=118.10  Aligned_cols=215  Identities=17%  Similarity=0.188  Sum_probs=139.5

Q ss_pred             CCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHH---------HHhhccc-C
Q 012296          207 YGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIF---------IETVLPK-M  273 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~-e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~---------~~~~l~~-~  273 (466)
                      ........+.+.+.++.+. +.+.++.||++|+..++....  ...++||.....|++....         ....+.. .
T Consensus        89 ~~~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~  168 (427)
T d2gsaa_          89 APCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSP  168 (427)
T ss_dssp             SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCS
T ss_pred             cchhHHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCC
Confidence            3456677788888887655 567778899999999987543  3456888888888872110         0000110 0


Q ss_pred             C------ceEEEeCCCCHHHHHHhhcC--CCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeCCCCCCC--
Q 012296          274 G------ITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL--  339 (466)
Q Consensus       274 G------i~v~~vd~~Dle~Le~ai~~--~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDea~a~~~--  339 (466)
                      +      ......+..|++++++.+++  .++.+|++|......|.+.+    +++|.++|++||++||+||++...-  
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g  248 (427)
T d2gsaa_         169 GVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIA  248 (427)
T ss_dssp             SSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTB
T ss_pred             CCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceec
Confidence            1      13344567799999999975  24889999987766677776    9999999999999999999975321  


Q ss_pred             ---cccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH-HhCC--CchHHHHHHHHHhhHHHHH--HHH
Q 012296          340 ---NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGG--ALNPNAAYLIIRGMKTLHL--RVQ  411 (466)
Q Consensus       340 ---~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~-~~G~--~lsp~~a~l~l~~L~tl~~--R~~  411 (466)
                         ...-.....||++  +.|.++++-  ..|++++++++++.+..... ..+.  ..+|..+..++..|+.+..  .++
T Consensus       249 ~~~~~~~~gi~PDi~~--~gK~lggG~--p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~  324 (427)
T d2gsaa_         249 YGGVQEKFGVTPDLTT--LGKIIGGGL--PVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYE  324 (427)
T ss_dssp             TTCHHHHTTCCCSEEE--ECGGGGTTS--CCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHH
T ss_pred             ccchHHhcCCCHHHHh--hhhccCCCc--ceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHh
Confidence               1122233478988  568887653  45778889998876643211 1111  3467777666666665432  234


Q ss_pred             HHHHHHHHHHHHHH
Q 012296          412 QQNSTALRMAKILE  425 (466)
Q Consensus       412 ~~~~na~~La~~L~  425 (466)
                      +..+..+++.+.|+
T Consensus       325 ~~~~~g~~l~~~L~  338 (427)
T d2gsaa_         325 YLDQITKRLSDGLL  338 (427)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHH
Confidence            44444444544443

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.26  E-value=1.3e-10  Score=118.62  Aligned_cols=240  Identities=12%  Similarity=0.168  Sum_probs=144.2

Q ss_pred             ccccCCCchhHHHHHHHHHhhh--CCCcEEEeCCHHHHHHHHHHHH--ccCCCEEEEcCCCCcchHHHHHhhcc-----c
Q 012296          202 FEYGRYGNPTTVVVEEKMSALE--GAESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLP-----K  272 (466)
Q Consensus       202 ~~Y~R~~np~~~~Lee~LA~l~--g~e~~l~~sSGs~Ai~~al~al--l~~Gd~Vlv~~~~y~~t~~~~~~~l~-----~  272 (466)
                      |....+.++...+|.++|.++.  +.+.+.+++||++|+..++...  ....++|+.....|++..........     .
T Consensus        75 ~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~  154 (431)
T d1zoda1          75 HLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKG  154 (431)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSS
T ss_pred             ccccccccHHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccc
Confidence            4455566777788888888876  4477888899999999998754  24457888888888884322211100     0


Q ss_pred             C---CceEEEeCC--------------C---CHHHHHHhh---cCCCceEEEEeCCCCCCccccc----HHHHHHHHHhc
Q 012296          273 M---GITATVIDP--------------A---DMEGLEAAL---NNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKK  325 (466)
Q Consensus       273 ~---Gi~v~~vd~--------------~---Dle~Le~ai---~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~  325 (466)
                      .   ......++.              .   +++.++..+   ..+++.+|++|......|.+.+    +++|.++|+++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~  234 (431)
T d1zoda1         155 VGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR  234 (431)
T ss_dssp             SCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH
T ss_pred             cCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhc
Confidence            0   011111110              0   123332222   2335899999988755566554    89999999999


Q ss_pred             CCEEEEeCCCCCC------CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhC--CCchHHHHH
Q 012296          326 GAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG--GALNPNAAY  397 (466)
Q Consensus       326 gillIvDea~a~~------~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G--~~lsp~~a~  397 (466)
                      |++||.||++.+.      ........-+|+++  +.|.++++-  ..+.+++.+++++.........+  ...+|..+.
T Consensus       235 gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~--~gK~l~gG~--p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~a  310 (431)
T d1zoda1         235 GMLLILDEAQTGVGRTGTMFACQRDGVTPDILT--LSKTLGAGL--PLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAA  310 (431)
T ss_dssp             TCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECHHHHTTS--SCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHH
T ss_pred             CceEEeccccccccccccccccccCCCCcchhc--ccccccccc--ccceeeeeecchhhhhcccccccCCCCCCcchHH
Confidence            9999999996631      11222334578888  679998764  34666777777766543222222  234566655


Q ss_pred             HHHHhhHHHHH--HHHHHHH----HHHHHHHHHHcCCCeEEEeCCCCCCCchHHHHHhhcCCcceEEEEEec
Q 012296          398 LIIRGMKTLHL--RVQQQNS----TALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVL  463 (466)
Q Consensus       398 l~l~~L~tl~~--R~~~~~~----na~~La~~L~~~p~V~~V~yPgl~s~p~~~~~~~~~~g~Gg~vsfel~  463 (466)
                      +++..++.+..  .+++..+    ..+.+.+.++++|.|..|                  +|.|.|++|++.
T Consensus       311 aa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~v------------------rG~Glm~~ie~~  364 (431)
T d1zoda1         311 VGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDV------------------RGRGLLLGVEIV  364 (431)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEEE
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEEE------------------eecceEEEEEEe
Confidence            55544443321  1222222    223344555667877665                  567777777763

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=3.7e-10  Score=115.32  Aligned_cols=227  Identities=16%  Similarity=0.176  Sum_probs=134.8

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc-------cCCCEEEEcCCCCcchHHHHHhhcc---
Q 012296          204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV-------PAGGHIVTTTDCYRKTRIFIETVLP---  271 (466)
Q Consensus       204 Y~R~~np~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all-------~~Gd~Vlv~~~~y~~t~~~~~~~l~---  271 (466)
                      ++.+.++...++.+++.+....  +.+.+.+||++|+..++....       .+..+|+.....|++..........   
T Consensus        80 ~~~~~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~  159 (429)
T d1s0aa_          80 FGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDN  159 (429)
T ss_dssp             CSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTT
T ss_pred             cCCccchHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCcc
Confidence            3455566677777777777643  567788999999988876442       2235788888888773221111110   


Q ss_pred             -------cC-CceEEE----------eCCCCHHHHHHhhc--CCCceEEEEeCCC-CCCcccc-c---HHHHHHHHHhcC
Q 012296          272 -------KM-GITATV----------IDPADMEGLEAALN--NNNVSLFFTESPT-NPFLRCV-D---VKLVSDLCHKKG  326 (466)
Q Consensus       272 -------~~-Gi~v~~----------vd~~Dle~Le~ai~--~~~tklV~lesP~-NPtG~v~-d---l~~Ia~la~~~g  326 (466)
                             .. ......          .+..+++++++.+.  ..++.+|++|... +..|... +   +++|.++|+++|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~g  239 (429)
T d1s0aa_         160 SMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREG  239 (429)
T ss_dssp             TTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHT
T ss_pred             ccccccCccccccccccccccccccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcC
Confidence                   00 001110          11123555554443  2348999998764 4444433 3   899999999999


Q ss_pred             CEEEEeCCCCCC------CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHH---HhCC--CchHHH
Q 012296          327 AIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH---VLGG--ALNPNA  395 (466)
Q Consensus       327 illIvDea~a~~------~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~---~~G~--~lsp~~  395 (466)
                      +++|+||++.+.      ........-.||++  ++|.+++++ ...|++++++++.+.+.....   ..+.  .-+|..
T Consensus       240 illI~DEV~tGfGRtG~~~~~~~~~v~PDi~~--~gK~l~gG~-~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~  316 (429)
T d1s0aa_         240 ILLIADEIATGFGRTGKLFACEHAEIAPDILC--LGKALTGGT-MTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA  316 (429)
T ss_dssp             CEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTSS-SCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHH
T ss_pred             cceehhhccccccccccccccccceecccccc--ccccccccc-ccccchhhHHHHHhccCCCCCcceeecCCCCCCccc
Confidence            999999996532      22333344578988  679997654 357888899999887653210   0111  235677


Q ss_pred             HHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH---cCCCeEEE
Q 012296          396 AYLIIRGMKTLHL--RVQQQNSTALRMAKILE---AHPKVKRV  433 (466)
Q Consensus       396 a~l~l~~L~tl~~--R~~~~~~na~~La~~L~---~~p~V~~V  433 (466)
                      +.+++..|+.+..  -+++..+..+++.+.|+   +++.|..|
T Consensus       317 ~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~v  359 (429)
T d1s0aa_         317 CAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADV  359 (429)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEEEE
T ss_pred             chhhhccccccccccccchhhHHHHHHHHHHHHhccCCceEEE
Confidence            7666666665532  23334444455555553   44555555

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=4.5e-10  Score=114.37  Aligned_cols=224  Identities=14%  Similarity=0.138  Sum_probs=133.9

Q ss_pred             CCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHc--cCCCEEEEcCCCCcchHHHHHhhccc---------
Q 012296          207 YGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPK---------  272 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~---e~~l~~sSGs~Ai~~al~all--~~Gd~Vlv~~~~y~~t~~~~~~~l~~---------  272 (466)
                      ..++...+|.+.|.++...   +.+.+++||++|+..+++...  ....+|+.....|++...........         
T Consensus        80 ~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~  159 (425)
T d1sffa_          80 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMG  159 (425)
T ss_dssp             EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSC
T ss_pred             ccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcc
Confidence            3467777888888888753   457777899999999887542  34467888888888843222111100         


Q ss_pred             -CCceEEEeCCC-------------CHHHH-HHhhcCCCceEEEEeCCCCCCccccc----HHHHHHHHHhcCCEEEEeC
Q 012296          273 -MGITATVIDPA-------------DMEGL-EAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDG  333 (466)
Q Consensus       273 -~Gi~v~~vd~~-------------Dle~L-e~ai~~~~tklV~lesP~NPtG~v~d----l~~Ia~la~~~gillIvDe  333 (466)
                       ...........             +.+++ +......++.+|++|......|...+    ++.|.++|+++|+++|+||
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DE  239 (425)
T d1sffa_         160 LMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADE  239 (425)
T ss_dssp             CCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             cccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEecc
Confidence             00111111100             01111 11112224789999987765665542    7899999999999999999


Q ss_pred             CCCCC------CcccccccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCCCchHHHHHHHHHhhHHHH
Q 012296          334 TFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH  407 (466)
Q Consensus       334 a~a~~------~~~~~l~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~  407 (466)
                      ++.+.      ..+......+||++  ++|.++++-  ..|++++++++++.+..........-+|..+.+++..|+.+.
T Consensus       240 V~tG~gR~g~~~a~~~~gv~PDi~~--~gK~l~gG~--P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~  315 (425)
T d1sffa_         240 VQSGAGRTGTLFAMEQMGVAPDLTT--FAKSIAGGF--PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE  315 (425)
T ss_dssp             TTTTTTTTSSSSGGGGTTSCCSEEE--ECGGGGTSS--CCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH
T ss_pred             ccccCCCcchhhHHHhcCCCcccee--cccccCCCc--ceEEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            96531      12333344578888  779998753  568888999887765432211112235777777766666653


Q ss_pred             H--HHHHHHHHH----HHHHHHHHcCCCeEEEe
Q 012296          408 L--RVQQQNSTA----LRMAKILEAHPKVKRVH  434 (466)
Q Consensus       408 ~--R~~~~~~na----~~La~~L~~~p~V~~V~  434 (466)
                      .  .+++..+..    +.+.+.++++|.+..|+
T Consensus       316 ~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vr  348 (425)
T d1sffa_         316 QENLLQKANDLGQKLKDGLLAIAEKHPEIGDVR  348 (425)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred             HhhhhhhhhhhhhhhhhhhhhhHhhCCceEEEE
Confidence            2  122222333    33444556678776663

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.12  E-value=8e-10  Score=112.91  Aligned_cols=235  Identities=16%  Similarity=0.185  Sum_probs=155.4

Q ss_pred             HHHHHHHHHhhhCCCcEE-EeCCHHHHHHHHHHHH--ccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCCCCHHHH
Q 012296          212 TVVVEEKMSALEGAESTV-IMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (466)
Q Consensus       212 ~~~Lee~LA~l~g~e~~l-~~sSGs~Ai~~al~al--l~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~Dle~L  288 (466)
                      .-++++.|+++.|.+.+- -...|.+|....+...  ....++++++..+|+.++..+...+...|++++.++..+....
T Consensus       110 l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~~  189 (437)
T d1wyua1         110 TFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTP  189 (437)
T ss_dssp             HHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCC
T ss_pred             HHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeecccccch
Confidence            456899999999986433 3346664443333322  2356789999999999887777777888999998876543322


Q ss_pred             HHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCC-CCcccccccCCcEEEECCcccc------Cc
Q 012296          289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT-PLNQKALSLGADLVLHSATKFI------GG  361 (466)
Q Consensus       289 e~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~-~~~~~~l~~gaDivv~S~sK~l------gg  361 (466)
                      ...++++ +.+|++++|+ -.|.+.|+++|++++|+.|.++++|..... .....|.++|+||++.+ +|.|      ||
T Consensus       190 ~~~~~~~-~Aavmi~~Pn-t~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~GaDi~~g~-~q~fg~p~g~GG  266 (437)
T d1wyua1         190 LPEVGEE-VGAVVVQNPN-FLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGD-GQSLGLPMGFGG  266 (437)
T ss_dssp             CCCCCTT-EEEEEEESSC-TTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEE-CTTTTCCCGGGC
T ss_pred             hhhhccc-eeEEEEcccc-ccccccchHHHHHHhhhccceEEeeechhhhhccccccccccceEeec-cceeccccCCCc
Confidence            2335554 9999999996 579999999999999999998888765332 34466888999999988 4443      44


Q ss_pred             cccceeEEEEeCHHHHHHHHH-------------------------HHHHhC---CC----chH--HHHHHHHHhhHHHH
Q 012296          362 HNDVLAGSISGSGKLVTQIRN-------------------------LHHVLG---GA----LNP--NAAYLIIRGMKTLH  407 (466)
Q Consensus       362 ~gdv~gG~ivg~~eli~~l~~-------------------------~~~~~G---~~----lsp--~~a~l~l~~L~tl~  407 (466)
                      |+   +|++.+++++...+-.                         .++.-+   .+    +..  ..+|+...|-+-|.
T Consensus       267 P~---~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~  343 (437)
T d1wyua1         267 PH---FGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLR  343 (437)
T ss_dssp             SC---CEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cc---cccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHH
Confidence            43   6888888776543311                         011111   01    111  12455555555565


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCeEEEeCCC--C-----C-CCchHHHHHhhc-CC
Q 012296          408 LRVQQQNSTALRMAKILEAHPKVKRVHYPG--L-----K-SHPEHHIATQQM-TG  453 (466)
Q Consensus       408 ~R~~~~~~na~~La~~L~~~p~V~~V~yPg--l-----~-s~p~~~~~~~~~-~g  453 (466)
                      ..-++...|+.++++.|.+++++.. .+++  +     . +.+..+++++.+ .|
T Consensus       344 ~ia~~a~~~A~yl~~~L~~~~g~~~-~~~~~~f~ef~v~~~~~~~~i~k~L~d~G  397 (437)
T d1wyua1         344 EVALKSVEMAHKLHALLLEVPGVRP-FTPKPFFNEFALALPKDPEAVRRALAERG  397 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTCEE-CSCSSBCSEEEEECSSCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCeec-cCCCCeeeEEEEECCCCHHHHHHHHHhCC
Confidence            5567778999999999999988863 3332  1     1 223455677655 44

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.05  E-value=5.2e-09  Score=97.79  Aligned_cols=217  Identities=14%  Similarity=0.037  Sum_probs=122.4

Q ss_pred             CCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeCC--
Q 012296          207 YGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (466)
Q Consensus       207 ~~np~~~~Lee~LA~l~g~e--~~l~~sSGs~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--  282 (466)
                      ..++..+++++++|+++|.+  +++++++|++|+..++..++.+++.+++....|......... .......+.....  
T Consensus        32 ~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  110 (340)
T d1svva_          32 GQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAI-EATGHKVVTAPCPDG  110 (340)
T ss_dssp             TCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHH-HHTTCCEEEECCTTS
T ss_pred             CCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhhhccccccccccceeeeecccc-cccceeeeecccccc
Confidence            36788999999999999984  456667888999999999999999999988877653221111 1111222222221  


Q ss_pred             -CCHHHHHHhhc------CCCceEEEEeCCCCCCcccc---cHHHHHHHHHhcCCEEEEeCCCCCCCc--------cccc
Q 012296          283 -ADMEGLEAALN------NNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN--------QKAL  344 (466)
Q Consensus       283 -~Dle~Le~ai~------~~~tklV~lesP~NPtG~v~---dl~~Ia~la~~~gillIvDea~a~~~~--------~~~l  344 (466)
                       .+.+...++..      ..++.++++..++| .|.+.   ++..+.++|+++|.++++|+++.....        ....
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~  189 (340)
T d1svva_         111 KLRVADIESALHENRSEHMVIPKLVYISNTTE-VGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADI  189 (340)
T ss_dssp             CCCHHHHHHHHHHSCSTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHH
T ss_pred             cccchhHHHHhhhhhcccCCcceeeeeccccc-ccccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccc
Confidence             12222222221      11134455545554 44444   466788999999999999999642111        1111


Q ss_pred             ccCCcEEEECCccccCccccceeEEEEeCHHHHHHHHHHHHHhCC-Cch-HHHHHHHHHh--hHHHHHHHHHHHHHHHHH
Q 012296          345 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG-ALN-PNAAYLIIRG--MKTLHLRVQQQNSTALRM  420 (466)
Q Consensus       345 ~~gaDivv~S~sK~lgg~gdv~gG~ivg~~eli~~l~~~~~~~G~-~ls-p~~a~l~l~~--L~tl~~R~~~~~~na~~L  420 (466)
                      ....++...+..|..++.+   +++..................+. ... ......++..  ........++..++++.+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~  266 (340)
T d1svva_         190 ARLTDMFYIGATKAGGMFG---EALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAIL  266 (340)
T ss_dssp             HHHCSEEEEECTTTTCSSC---EEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH
T ss_pred             cccceeeecCCcccccccc---ccccccchhhhhhhhhhcccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Confidence            1224566666666665543   45555555444433333222222 221 2211112222  223344556667788888


Q ss_pred             HHHHHcCC
Q 012296          421 AKILEAHP  428 (466)
Q Consensus       421 a~~L~~~p  428 (466)
                      .+.|++.+
T Consensus       267 ~~~l~~~g  274 (340)
T d1svva_         267 KAGLEACG  274 (340)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHhcCC
Confidence            88888753

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.95  E-value=2e-08  Score=103.16  Aligned_cols=228  Identities=13%  Similarity=0.132  Sum_probs=124.4

Q ss_pred             hhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc----------------------------cCCCEEEEcCCCC
Q 012296          210 PTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV----------------------------PAGGHIVTTTDCY  259 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~--e~~l~~sSGs~Ai~~al~all----------------------------~~Gd~Vlv~~~~y  259 (466)
                      ...++|.+.|.++...  +.+++.+||++|+..++....                            .+..+||.....|
T Consensus       100 ~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~sy  179 (461)
T d1ohwa_         100 NFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAF  179 (461)
T ss_dssp             THHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCC
T ss_pred             HHHHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCc
Confidence            3455666666665443  678889999999998886432                            1234788888888


Q ss_pred             cchH-HHHH--------hh-cccCCceEEEeCC-----------------CCHHHHHHhhc-----CCCceEEEEeCCCC
Q 012296          260 RKTR-IFIE--------TV-LPKMGITATVIDP-----------------ADMEGLEAALN-----NNNVSLFFTESPTN  307 (466)
Q Consensus       260 ~~t~-~~~~--------~~-l~~~Gi~v~~vd~-----------------~Dle~Le~ai~-----~~~tklV~lesP~N  307 (466)
                      ++.. ..+.        .. ....+........                 .+.+++++.+.     ..++.+|++|....
T Consensus       180 HG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g  259 (461)
T d1ohwa_         180 HGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQS  259 (461)
T ss_dssp             CCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBC
T ss_pred             CCCCcccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccc
Confidence            8732 1111        10 1111111111100                 01344554442     23488999999887


Q ss_pred             CCccccc----HHHHHHHHHhcCCEEEEeCCCCCC----C--ccccccc--CCcEEEECCccccCccccceeEEEEeCHH
Q 012296          308 PFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP----L--NQKALSL--GADLVLHSATKFIGGHNDVLAGSISGSGK  375 (466)
Q Consensus       308 PtG~v~d----l~~Ia~la~~~gillIvDea~a~~----~--~~~~l~~--gaDivv~S~sK~lgg~gdv~gG~ivg~~e  375 (466)
                      ..|...+    +++|.++|++||++||+||++...    .  .......  -+|+++  ++|.+++      |++.....
T Consensus       260 ~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~--~gK~l~~------g~~~~~~~  331 (461)
T d1ohwa_         260 EGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMT--FSKKMMT------GGFFHKEE  331 (461)
T ss_dssp             TTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEE--ECGGGSS------EEEEECGG
T ss_pred             cccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhh--hhhcccc------cccccccc
Confidence            7776543    889999999999999999996432    1  1222222  268886  6798875      23333332


Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH----cCCC-eEEEeCCCCCCCchHHHHH
Q 012296          376 LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILE----AHPK-VKRVHYPGLKSHPEHHIAT  448 (466)
Q Consensus       376 li~~l~~~~~~~G~~lsp~~a~l~l~~L~tl~~--R~~~~~~na~~La~~L~----~~p~-V~~V~yPgl~s~p~~~~~~  448 (466)
                      +... ...........+|..+.+++..|+.+..  .+++..+..+.|.+.|+    ++|. |..|               
T Consensus       332 ~~~~-~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~v---------------  395 (461)
T d1ohwa_         332 FRPN-APYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRV---------------  395 (461)
T ss_dssp             GSCS-STTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEE---------------
T ss_pred             cccc-cccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEe---------------
Confidence            2111 0000000122356666666666665532  22333344444444444    3443 4444               


Q ss_pred             hhcCCcceEEEEEecc
Q 012296          449 QQMTGFGGVVSFEVLM  464 (466)
Q Consensus       449 ~~~~g~Gg~vsfel~~  464 (466)
                         +|.|.|++|++.+
T Consensus       396 ---rG~Gl~~~ie~~~  408 (461)
T d1ohwa_         396 ---RGRGTFCSFDTPD  408 (461)
T ss_dssp             ---EEETTEEEEECSS
T ss_pred             ---eeeeEEEEEEcCC
Confidence               4566666666654

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=5.5e-09  Score=101.32  Aligned_cols=155  Identities=10%  Similarity=-0.026  Sum_probs=103.8

Q ss_pred             hHHHHHHHHHhhhCCC--cEEEe-CCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC-----
Q 012296          211 TTVVVEEKMSALEGAE--STVIM-ASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-----  281 (466)
Q Consensus       211 ~~~~Lee~LA~l~g~e--~~l~~-sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd-----  281 (466)
                      ..++.++.|+++++++  ..+++ ++++ .++.+++..+..+++.+++....+.+.  .+....+..+..+....     
T Consensus        47 l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  124 (360)
T d1bjna_          47 VAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAA--SAIKEAKKYCTPNVFDAKVTVD  124 (360)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSHHHH--HHHHHHTTTSEEEEEECEEEET
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcccccccccceecccchhh--hhHHHHhhcCccceeeccccCC
Confidence            3677899999999984  24444 4443 556666666777888888776655543  23345666676655443     


Q ss_pred             CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCCcccccccCCcEEEECCccccCc
Q 012296          282 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGG  361 (466)
Q Consensus       282 ~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~~~~~l~~gaDivv~S~sK~lgg  361 (466)
                      ..+.+.+++.+..+ ++++.+...+|.||...+++.+.  ++.+++++++|.+.+.+.. +....+.|+++.|.+|++++
T Consensus       125 ~~~~~~~~~~~~~~-~~~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~~~-~vd~~~~dv~~~ss~k~~~~  200 (360)
T d1bjna_         125 GLRAVKPMREWQLS-DNAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSR-PIDVSRYGVIYAGAQKNIGP  200 (360)
T ss_dssp             TEEEECCGGGCCCC-SSCSCEEECSEETTTTEECCCCC--CCCTTCCEEEECTTTTTSS-CCCGGGCSEEEEETTTTTSS
T ss_pred             CcchhhhhhhhccC-CceeEEEecccccccCcccccee--cccccceeeeeeeccccce-eeeeccceeEEEEccccccc
Confidence            12345555556554 78888888889999998887664  5678899999998764322 22234579999999999998


Q ss_pred             cccceeEEEEeC
Q 012296          362 HNDVLAGSISGS  373 (466)
Q Consensus       362 ~gdv~gG~ivg~  373 (466)
                      ++  .+|+++..
T Consensus       201 ~~--~~~~~~~~  210 (360)
T d1bjna_         201 AG--LTIVIVRE  210 (360)
T ss_dssp             TT--CEEEEEEG
T ss_pred             CC--CceeEeee
Confidence            87  34554443

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=98.81  E-value=1e-08  Score=100.65  Aligned_cols=145  Identities=10%  Similarity=0.013  Sum_probs=101.9

Q ss_pred             hhHHHHHHHHHhhhCCCc---EEEeCCHH-HHHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC----
Q 012296          210 PTTVVVEEKMSALEGAES---TVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID----  281 (466)
Q Consensus       210 p~~~~Lee~LA~l~g~e~---~l~~sSGs-~Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd----  281 (466)
                      ...++.++.|+++++.++   ++++++++ .++.+++..+..+|+++++.......  ..+....+..|..+..+.    
T Consensus        48 ~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~~~~~~~l~~~~g~~~--~~~~~~~~~~g~~~~~~~~~~~  125 (361)
T d2c0ra1          48 AVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWA--SKALKEAKLIGDTHVAASSEAS  125 (361)
T ss_dssp             HHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHH--HHHHHHHHHHSCEEEEEECGGG
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhccccCCCceEEEeechhh--hhhhhhhhhcCceeeeeccccc
Confidence            445678999999999843   44444444 56677777788889988766544333  334455667787777664    


Q ss_pred             -CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCCC-cccccccCCcEEEECCcccc
Q 012296          282 -PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI  359 (466)
Q Consensus       282 -~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~~-~~~~l~~gaDivv~S~sK~l  359 (466)
                       ..+++.+++.+..+  +.+++   +|.||...++++|.++|+++|+++++|.+.+.+. ..+..+  .|+.+.|.+|.+
T Consensus       126 ~~~~~~~~~~~~~~~--~~~~v---~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~id~~~--~di~~~s~~k~~  198 (361)
T d2c0ra1         126 NYMTLPKLQEIQLQD--NAAYL---HLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFDLNQ--FGLVYAGAQKNL  198 (361)
T ss_dssp             TTCSCCCGGGCCCCT--TEEEE---EEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTT
T ss_pred             cccchhhhhhhcccC--cceEE---EEecccceecceEEEeeccCCceEEEEeecccccccccccc--ceeEEEeccccc
Confidence             23567777777654  34444   4677999999999999999999999999976543 344444  467777889999


Q ss_pred             Cccc
Q 012296          360 GGHN  363 (466)
Q Consensus       360 gg~g  363 (466)
                      ++++
T Consensus       199 ~~~~  202 (361)
T d2c0ra1         199 GPSG  202 (361)
T ss_dssp             CCSS
T ss_pred             cccc
Confidence            9887

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=98.75  E-value=1.3e-09  Score=106.68  Aligned_cols=153  Identities=10%  Similarity=-0.051  Sum_probs=98.8

Q ss_pred             hHHHHHHHHHhhhCCC--cEEEeCCHH-H-HHHHHHHHHccCCCEEEEcCCCCcchHHHHHhhcccCCceEEEeC-----
Q 012296          211 TTVVVEEKMSALEGAE--STVIMASGM-S-ASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-----  281 (466)
Q Consensus       211 ~~~~Lee~LA~l~g~e--~~l~~sSGs-~-Ai~~al~all~~Gd~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd-----  281 (466)
                      ..++.++.|+++++.+  ..+++++|+ + ++.++...+.++++.+++....+.+.. +. ..+...+.......     
T Consensus        49 ~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~-~~-~~~~~~~~~~~~~~~~~~~  126 (360)
T d1w23a_          49 VHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEK-AL-KEAKLLGETHIAASTKANS  126 (360)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHH-HH-HHHHTTSEEEEEEECGGGT
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhhcccCcccceeeccchhhh-hH-HHHHHhhhcceeecccccc
Confidence            5677899999999983  467776666 3 344455556777888888766555432 22 33455565544432     


Q ss_pred             CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCCC-CcccccccCCcEEEECCccccC
Q 012296          282 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIG  360 (466)
Q Consensus       282 ~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~~-~~~~~l~~gaDivv~S~sK~lg  360 (466)
                      ..+++.+++....  .+.+++   .|.||.+.|+++|.++||++|+++|+|.+.+.+ ...+..++++|+...+.+|+++
T Consensus       127 ~~~~~~~~~~~~~--~~~~~~---~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~  201 (360)
T d1w23a_         127 YQSIPDFSEFQLN--ENDAYL---HITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPS  201 (360)
T ss_dssp             SCSCCCGGGCCCC--TTEEEE---EEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCT
T ss_pred             ccchhhhhhcccc--ccccee---EecCCccccceeeeeccccceeeEEeeccccccccccccccccceEEeeccccccC
Confidence            1234444444433  345555   355799999999999999999999999997654 4455567777777766666554


Q ss_pred             ccccceeEEEEeCH
Q 012296          361 GHNDVLAGSISGSG  374 (466)
Q Consensus       361 g~gdv~gG~ivg~~  374 (466)
                      ++    +|+++.++
T Consensus       202 ~~----~~~~~~~~  211 (360)
T d1w23a_         202 GV----TVVIVKKD  211 (360)
T ss_dssp             TC----EEEEEEHH
T ss_pred             Cc----ceeeEech
Confidence            43    35555443

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.16  E-value=9.3e-06  Score=83.03  Aligned_cols=215  Identities=19%  Similarity=0.195  Sum_probs=130.1

Q ss_pred             HHHHHHHHHhhhCCCcE-EEeCCHHHHH-HHHHHHH---ccCC----CEEEEcCCCCcchHHHHHhhcccCCceEEEeC-
Q 012296          212 TVVVEEKMSALEGAEST-VIMASGMSAS-TVMLLAL---VPAG----GHIVTTTDCYRKTRIFIETVLPKMGITATVID-  281 (466)
Q Consensus       212 ~~~Lee~LA~l~g~e~~-l~~sSGs~Ai-~~al~al---l~~G----d~Vlv~~~~y~~t~~~~~~~l~~~Gi~v~~vd-  281 (466)
                      .-+++..|++|+|.+-+ .-.-.|..|. .+++++.   .+.|    ..+++..+.+........   ...+..+..++ 
T Consensus       108 lfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  184 (471)
T d1wyub1         108 MWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATA---SMAGYQVREIPS  184 (471)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHH---HHTTCEEEEECB
T ss_pred             HHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeee---ecccceeecccc
Confidence            34579999999998632 2223454332 3322222   1233    234555555655443332   22344444333 


Q ss_pred             ----CCCHHHHHHhhcCCCceEEEEeCCCCCCcccccHHHHHHHHHhcCCEEEEeCCCCC--CCcccccccCCcEEEECC
Q 012296          282 ----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT--PLNQKALSLGADLVLHSA  355 (466)
Q Consensus       282 ----~~Dle~Le~ai~~~~tklV~lesP~NPtG~v~dl~~Ia~la~~~gillIvDea~a~--~~~~~~l~~gaDivv~S~  355 (466)
                          ..+.+.+.....++ +.++++++|++..+...+.+++++++|++|..+++|.+...  .....|-..|+|+++...
T Consensus       185 ~~~~~~~~~~~~~~~~~~-~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~  263 (471)
T d1wyub1         185 GPEGEVDLEALKRELGPH-VAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNL  263 (471)
T ss_dssp             CTTSSBCHHHHHHHCSTT-EEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCT
T ss_pred             cccccccchhhhhhhhcc-ccceeeccCCCcccccchhhhhHHHHHhccccccccccchhhhhhccccCccccccccccc
Confidence                23678888887775 89999999987665555799999999999999999876322  223456667889988888


Q ss_pred             ccccCcc---ccceeEEEEeCHHHHHHHHHH-------------------HHH---hCCCchHH--HHHHHHHhhHHHHH
Q 012296          356 TKFIGGH---NDVLAGSISGSGKLVTQIRNL-------------------HHV---LGGALNPN--AAYLIIRGMKTLHL  408 (466)
Q Consensus       356 sK~lgg~---gdv~gG~ivg~~eli~~l~~~-------------------~~~---~G~~lsp~--~a~l~l~~L~tl~~  408 (466)
                      ++.||.+   |.-..|++..+++++.++-..                   ++.   .+..+...  ..|+.+.|-+-|..
T Consensus       264 ~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~e  343 (471)
T d1wyub1         264 HKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKK  343 (471)
T ss_dssp             TTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHH
Confidence            8876543   112358888888876554210                   000   01111122  23555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCeE
Q 012296          409 RVQQQNSTALRMAKILEAHPKVK  431 (466)
Q Consensus       409 R~~~~~~na~~La~~L~~~p~V~  431 (466)
                      --++...++.++++.|+. ++++
T Consensus       344 lA~~~~~~A~Yla~~L~~-~G~~  365 (471)
T d1wyub1         344 AAALAVLNARYLKELLKE-KGYR  365 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TTCB
T ss_pred             HHHHHHHHHHHHHHHHhh-cCce
Confidence            566778899999999976 5554