Citrus Sinensis ID: 012301

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460------
Protein Sequence
MVSTATTLTLLPHPSLSFSHSSSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRNTTGSRTRTRPKTQAATKRWIHAVHQNKNQQP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccEEEEEEEEHHHHccccEEEEEEccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEEcccccccccEEEcccccccccccEEEEEEEEEEEcccccccccEEEEcccccccccccccccEEEEEEEEcccccEEEcccEEEEEEccHHHHcccccEEEcccccEEEEEcccccccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccEEccccccccEccccccccccccccccccccccccccccEEEEccccHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccEEEEEEEHHHHHcccEEEEEEccEEEccccccccccccccccccccccccEEEEEEEcccccEEEEEEEccccccccEEEcccccccccccEEEEEEEEEEEEccccccccEEEEEccccccccccccccEEEEEEEEccccEEEccccEEEEEEEEHHHHHHccEEEEEccccEEEEEEccccccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mvstattltllphpslsfshsssssflaggthlrshKNFAALtlsadscpfggsklnssnarsstyrfgrsvvcasgdyyatlgvpksasgKEIKAAYRKLARqyhpdvnkepgateKFKEISAAYEVLSDDKKRAMYDqygeagvkstvgggssayttnpfdlfetffgpsmggfpgmnqtgfrtrrrstvtkgedLRYDIVLEFSESIFGAekefelshletcevctgtgakmgskmricstcggrgqvmrtdqtpfglfsqvsvcpscggegevISEYCRKCsgegrirlkknikvkvppgvstgSILRVvgegdagprggppgdlyvyldveeipgiqrdgidLFSTISISYLDAIMGTVVKVKTVEgiselqvppgtqpgdVLVLakkgapklnkpsirgdhlFTVKVTIPNRISAKERELLEELASLRNttgsrtrtrpktqAATKRWIHAVHQNKNQQP
Flexible Loop (DISEMBL)
mvstattltllphpslsfsHSSSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKlnssnarsstyrFGRSVVCASGDYYAtlgvpksasgkEIKAAYRKLArqyhpdvnkepgatekfkEISAAYEVLSDDKKRAMYDQYGEagvkstvgggsSAYTTNPFDLFETFFGPSMGGfpgmnqtgfrtrrrstvtkgedlryDIVLEFSESIFGAEKEFELSHLETCEVCTgtgakmgskMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSgegrirlkknikvkvppgvstGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIselqvppgtqpgDVLVLAKKGapklnkpsirgdhlftvkVTIPNRISAKERELLEELAslrnttgsrtrtrpktqaatkRWIHAVHQNKNQQP
Low Complexity Region (SEG)
MVstattltllphpslsfshsssssflaggtHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETffgpsmggfpgmNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVgegdagprggppgDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIsakerelleelaslrNTTGSRTRTRPKTQAATKRWIHAVHQNKNQQP
Disordered region (IsUnstruct)
*************************************NFAALTL********************TYRFGRSVVCASGDYYATLGVPK******IKAAYRKL***********************AYEVL*******MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRT***STVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG********PGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVP*****GDVLVLAK*********SIRGDHLFTVKVTIPNRI***********************************************
Disordered Region (DISOPRED)
**************************************************************************ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK*********YTTNPFDLFETFFGPSMG************************RYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR**********GGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLE*******************************QN*****
Disordered Region (DISEMBL)
MVSTATTLTLLPHPSL**********LAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRNT****************RWIHAVHQNKNQQP
Disordered Region (DISPRO)
*************************************NFAAL*LSADSCPFGG*************RFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTG**M*SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR******************R**HAVH*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSTATTLTLLPHPSLSFSHSSSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRNTTGSRTRTRPKTQAATKRWIHAVHQNKNQQP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	466	2.2.26 [Sep-21-2011]
Q8DKR7	373	Chaperone protein DnaJ OS	yes	no	0.740	0.924	0.550	1e-110
B7KEJ8	375	Chaperone protein DnaJ OS	yes	no	0.757	0.941	0.559	1e-109
B0CAZ0	374	Chaperone protein DnaJ OS	yes	no	0.751	0.935	0.543	1e-109
B8HLD2	374	Chaperone protein DnaJ OS	yes	no	0.753	0.938	0.539	1e-107
B0JW23	374	Chaperone protein DnaJ OS	yes	no	0.761	0.949	0.533	1e-105
Q114R3	374	Chaperone protein DnaJ OS	yes	no	0.761	0.949	0.519	1e-105
Q2JW78	394	Chaperone protein DnaJ OS	yes	no	0.738	0.873	0.529	1e-102
Q55505	377	Chaperone protein DnaJ 1	N/A	no	0.755	0.933	0.538	1e-101
Q7VEJ6	378	Chaperone protein DnaJ OS	yes	no	0.748	0.923	0.511	1e-101
Q5N0G1	376	Chaperone protein DnaJ OS	yes	no	0.742	0.920	0.509	1e-100

>sp|Q8DKR7|DNAJ_THEEB Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2

 Score =  400 bits (1028), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/363 (55%), Positives = 253/363 (69%), Gaps = 18/363 (4%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           D+Y  LGV +SA  +E+K AYR+LAR+YHPDVNKEPGA EKFKEI+ AYEVLSD + RA 
Sbjct: 4   DFYEILGVSRSADAEELKRAYRRLARKYHPDVNKEPGAEEKFKEINRAYEVLSDPQARAN 63

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPF----DLFETFFGPSMGGFPGMNQTGFRT--RRRST 191
           YD++GEAGV      G S +         D+FETFFG            GF T  RR+  
Sbjct: 64  YDRFGEAGVSGVGAAGFSDFGIGDMGGFADIFETFFG------------GFTTSSRRQQG 111

Query: 192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQV 251
            T+GEDLRYD+ LEF E++FG EKE  ++HLETC+ C GTGAK G++   CSTCGG GQV
Sbjct: 112 PTRGEDLRYDLKLEFREAVFGGEKEIRINHLETCKTCQGTGAKPGTRPVTCSTCGGVGQV 171

Query: 252 MRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311
            R+ +TPFG F+Q++ CP+CGG G VI + C  C G+G I++ K +K+ +P GV  G+ L
Sbjct: 172 RRSARTPFGSFTQLTTCPTCGGSGVVIEDRCESCGGQGHIQVSKKLKITIPAGVDNGTRL 231

Query: 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVE 371
           RV GEGDAG RGGPPGDLYVYL V+  P  QR+G ++ S I ISYL AI+G  + V TV+
Sbjct: 232 RVSGEGDAGLRGGPPGDLYVYLFVQPDPEFQREGNNILSRIKISYLQAILGCRISVSTVD 291

Query: 372 GISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELA 431
           G +EL++P GTQPG VLVL  +G P++  P  RGDHL TV V IP  I+ +ERELLE+LA
Sbjct: 292 GEAELKIPAGTQPGTVLVLEGRGVPRVGNPVARGDHLITVDVEIPTHITHEERELLEKLA 351

Query: 432 SLR 434
            +R
Sbjct: 352 KIR 354

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|B7KEJ8|DNAJ_CYAP7 Chaperone protein DnaJ OS=Cyanothece sp. (strain PCC 7424) GN=dnaJ PE=3 SV=1

 Score =  396 bits (1017), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/359 (55%), Positives = 246/359 (68%), Gaps = 6/359 (1%)

Query: 77  GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRA 136
           GDYY  LGV + A+  EIK AYR+LAR+YHPDVNKE GA E+FKEI+ AYE+LS+ + RA
Sbjct: 3   GDYYEILGVSRDANKDEIKRAYRRLARKYHPDVNKEIGAEERFKEINRAYEILSEPETRA 62

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPF-DLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKG 195
            YD++GEAGV S  G G          D+FET F     GF GM  TG  +RRR+   +G
Sbjct: 63  RYDRFGEAGVSSGAGSGFEYGDMGGIADIFETIFS----GFGGMG-TGTSSRRRTGPVRG 117

Query: 196 EDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTD 255
           +DLR D  L F E++FG EKE  + HLETC+VC G+GAK G+  R CSTC G GQV R  
Sbjct: 118 DDLRLDFKLNFREAVFGGEKEIRIRHLETCQVCEGSGAKPGTGSRTCSTCSGSGQVRRAT 177

Query: 256 QTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVG 315
           +TPFG F+QVSVCP+C G GEVI E C  C G GR +  K +K+ +P GV  G+ LRV  
Sbjct: 178 RTPFGTFAQVSVCPTCNGSGEVIEEKCEACGGSGRKQETKKLKITIPAGVDNGTRLRVSR 237

Query: 316 EGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISE 375
           EGDAG RGGPPGDLYVYL VE     QR+GID+ S ISISYL AI+G  + V TV+G  E
Sbjct: 238 EGDAGQRGGPPGDLYVYLSVETDEEFQREGIDIKSEISISYLQAILGCRLSVNTVDGPEE 297

Query: 376 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434
           + + PGTQP  VL L  +G PKL  P  RGDHL T+ V+IP R++ +ERELLE+LA +R
Sbjct: 298 ITIEPGTQPNTVLTLPNRGVPKLGNPVARGDHLITINVSIPTRVNPEERELLEKLAKIR 356

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

>sp|B0CAZ0|DNAJ_ACAM1 Chaperone protein DnaJ OS=Acaryochloris marina (strain MBIC 11017) GN=dnaJ PE=3 SV=1

 Score =  394 bits (1012), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/359 (54%), Positives = 251/359 (69%), Gaps = 9/359 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV +SA   E+K +YR+LAR+YHPDVNKEPGA +KFKEI+ AYE LSD + R  
Sbjct: 4   DYYDILGVSRSADPDELKRSYRRLARKYHPDVNKEPGAEDKFKEINKAYETLSDPQMRGR 63

Query: 138 YDQYGEAGVKSTVGGGSSAYTT--NPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKG 195
           YDQ+GEAGV S  G G   +       D+FETFF     GF G  Q+G   RRRS   +G
Sbjct: 64  YDQFGEAGVSSAAGAGYQDFGDFGGFADIFETFFS----GFGGSPQSG---RRRSGPARG 116

Query: 196 EDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTD 255
           EDLR+D+ L+F E++FG E++  +SHLE+C+ C GTGAK G++ + CSTC G GQV R  
Sbjct: 117 EDLRFDLKLKFREAVFGGEQQIRISHLESCKTCEGTGAKPGTRPQTCSTCQGSGQVRRMT 176

Query: 256 QTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVG 315
           +TP G F+QVSVCP+C G+G+V++E C  C G G+ ++ K +++K+P GV TG+ LRV  
Sbjct: 177 RTPLGNFTQVSVCPTCNGQGQVVTEKCDSCGGRGQNQVSKKLQIKIPAGVDTGTRLRVSN 236

Query: 316 EGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISE 375
           EGDAG +GGPPGDLYVYL V+E    +RDG ++ S   ISYL AI+G  + VKTV+G   
Sbjct: 237 EGDAGQKGGPPGDLYVYLFVQEDSEFRRDGTNVLSEFKISYLQAILGAQLPVKTVDGEET 296

Query: 376 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434
           + +P GTQPG VL L   G P+L  P  RGDHL TV + IPNRIS +ERELL +LAS+R
Sbjct: 297 ITIPAGTQPGTVLTLENHGVPRLGNPVSRGDHLITVIIDIPNRISTEERELLVQLASIR 355

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Acaryochloris marina (strain MBIC 11017) (taxid: 329726)

>sp|B8HLD2|DNAJ_CYAP4 Chaperone protein DnaJ OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dnaJ PE=3 SV=1

 Score =  390 bits (1001), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/358 (53%), Positives = 250/358 (69%), Gaps = 7/358 (1%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV + A  +++K AYR+LAR+YHPDVNKE GA E+FKEI+ AYEVLSD + RA 
Sbjct: 4   DYYDILGVSRDAGQEDLKQAYRRLARKYHPDVNKEAGAEERFKEINRAYEVLSDPETRAR 63

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPF-DLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGE 196
           YD++GEAGV     G         F D+FE+ F     GF G+      +RRR+  ++G+
Sbjct: 64  YDRFGEAGVSGAAAGYGDMGDMGGFADIFESIFS----GFGGVGAG--TSRRRTGPSRGD 117

Query: 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ 256
           DLR+D+ LEF E+IFG EK+  ++HLETC  C G+GAK G+K R C TCGG GQV R  +
Sbjct: 118 DLRFDLKLEFREAIFGGEKQIRITHLETCTTCNGSGAKPGTKPRTCGTCGGAGQVRRATR 177

Query: 257 TPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGE 316
           TPFG F+QVSVCP+C G+G+VI + C  C G G+ ++ K +K+ +P GV TG+ LRV  E
Sbjct: 178 TPFGSFTQVSVCPTCNGKGQVIEDKCETCGGNGQAQVTKKLKITIPAGVDTGTRLRVSNE 237

Query: 317 GDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISEL 376
           GDAG +GGP GDLYVYL V+E P  +R+GI++ S + ISYL AI+G+ + V TV+G  EL
Sbjct: 238 GDAGQQGGPAGDLYVYLFVQEDPEFRREGINILSEVKISYLQAILGSRLMVNTVDGEVEL 297

Query: 377 QVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434
            +PPGTQP  VL L   G P+L  P  RGDHL TV + IP RISA+ERELLE+LA +R
Sbjct: 298 TIPPGTQPNTVLTLENHGVPRLGNPVSRGDHLITVLLEIPTRISAEERELLEKLAKIR 355

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

>sp|B0JW23|DNAJ_MICAN Chaperone protein DnaJ OS=Microcystis aeruginosa (strain NIES-843) GN=dnaJ PE=3 SV=1

 Score =  384 bits (985), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/360 (53%), Positives = 241/360 (66%), Gaps = 5/360 (1%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV + A  ++IK AYR+LAR+YHPDVNKEPGA E FKEI+ AYE+LS+ + R  
Sbjct: 4   DYYEILGVSRDAGKEDIKRAYRRLARKYHPDVNKEPGAEEHFKEINRAYEILSEPETRNR 63

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGED 197
           YD++GEAGV     G          D+FET F     GF GM       RRR+  T+GED
Sbjct: 64  YDRFGEAGVSGGAAGFDPDNMGGFADIFETIFS----GFGGMGGQA-TARRRTGPTRGED 118

Query: 198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQT 257
           LR D  L+F E++FG EKE  + HLETC+ C G+GA+ G+  R C+TC G GQV R  +T
Sbjct: 119 LRLDFRLKFREAVFGGEKEIRIRHLETCQTCKGSGARPGTSSRTCTTCSGTGQVRRATRT 178

Query: 258 PFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG 317
           PFG F+QVSVCP+C G GEVI E C  C G GR +  K +K+ +P GV  G  LRV  EG
Sbjct: 179 PFGTFAQVSVCPTCDGAGEVIEEKCDVCGGSGRRQETKKLKITIPAGVDNGMKLRVAREG 238

Query: 318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQ 377
           DAG +GGPPGDL+VYL VE     QR+G D+ S I+ISY+ AI+G  +KV TV+G  +L 
Sbjct: 239 DAGLKGGPPGDLFVYLTVETDAEFQREGNDIKSDITISYIQAILGCTIKVNTVDGQEDLT 298

Query: 378 VPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRNTT 437
           +P GTQP  VL+L  KG PKL  P  RGDH  TVK++IP R++ +ERELLE+LA +R  T
Sbjct: 299 IPAGTQPNTVLILENKGVPKLGNPVSRGDHRITVKISIPTRVTGEERELLEKLAKVRGET 358

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)

>sp|Q114R3|DNAJ_TRIEI Chaperone protein DnaJ OS=Trichodesmium erythraeum (strain IMS101) GN=dnaJ PE=3 SV=1

 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/364 (51%), Positives = 248/364 (68%), Gaps = 9/364 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV +SA  +E+K AYR+LAR+YHPDVNKEPG+ E+FKEI+ AYE+LSD + +A 
Sbjct: 4   DYYEILGVSRSADKEELKRAYRRLARKYHPDVNKEPGSEERFKEINRAYEILSDPEMKAR 63

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGED 197
           +D++GEAGV    GG +S ++T+  D F   F     GF G    G   RRR+   +G+D
Sbjct: 64  FDRFGEAGVS---GGAASGFSTDFSDSFADIFESFFSGFGGAGTQG---RRRTGPVRGDD 117

Query: 198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQT 257
           LR D+ LEF E+IFG +KE  + HLETC  C G+GAK G+K + CSTCGG GQV R  +T
Sbjct: 118 LRLDLNLEFIEAIFGGDKELTIKHLETCGTCNGSGAKPGTKPQTCSTCGGTGQVRRATRT 177

Query: 258 PFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG 317
           PF  F+QVSVCPSC G G++I E C  C G G+    K IK+ +P GV  G+ LRV  EG
Sbjct: 178 PFSSFTQVSVCPSCNGSGQIIEEKCVDCGGRGQKEATKKIKITIPGGVDNGTRLRVSNEG 237

Query: 318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQ 377
           DAG  GGPPGDLYV+L V+  P  QRDGI++ S I ISYL AI+G  +++ TV+G +EL 
Sbjct: 238 DAGRMGGPPGDLYVFLSVKNHPEFQRDGINIISQIKISYLQAILGCCLEINTVDGKTELT 297

Query: 378 VPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRNTT 437
           +P GTQP  +L L  KG P+L     RG HL T+++ IP +I+ +E+ELLE+LA ++   
Sbjct: 298 IPSGTQPNAILTLEDKGVPRLGNSVSRGAHLITIEIDIPTKITPEEKELLEKLAKIK--- 354

Query: 438 GSRT 441
           G RT
Sbjct: 355 GERT 358

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

>sp|Q2JW78|DNAJ_SYNJA Chaperone protein DnaJ OS=Synechococcus sp. (strain JA-3-3Ab) GN=dnaJ PE=3 SV=1

 Score =  371 bits (953), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/372 (52%), Positives = 249/372 (66%), Gaps = 28/372 (7%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV + +S +EIK AYR+LAR+YHPDVNKEPGA ++FKEI+ AYEVLSDD+ RA 
Sbjct: 4   DYYEILGVSRDSSKEEIKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDDELRAR 63

Query: 138 YDQYGEAG----------VKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTR 187
           YD++GEAG           +   G G  A      DLFE+FF    GG  G       +R
Sbjct: 64  YDRFGEAGLSGAAAAASGFQDFAGIGGFA------DLFESFFTNFAGGGVGY------SR 111

Query: 188 RRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGG 247
            R    +G+DLR+D+ LEF E+IFG EK+  +SHLE C VC G+GAK G+ +++C TCGG
Sbjct: 112 SRQGPVRGDDLRFDLKLEFLEAIFGGEKQIRISHLEVCPVCGGSGAKPGTDVKVCPTCGG 171

Query: 248 RGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307
            GQV R  +TPFG F+QVS+CP+CGG G V+ E C  C+GEG  +  K +++ +P GV +
Sbjct: 172 AGQVRRATRTPFGNFTQVSICPTCGGAGRVLEEPCYNCNGEGLAQTTKKLRINIPAGVDS 231

Query: 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           G+ LRV GEGDAG RGGPPGDLYVYL VE  P  QRDG+ +FS + +SYL AI+G  V V
Sbjct: 232 GTRLRVSGEGDAGRRGGPPGDLYVYLFVEPDPDFQRDGLTIFSQVRVSYLQAILGAKVLV 291

Query: 368 KTV------EGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISA 421
            TV      E  +EL +P G+QPG VL L  KG P+L  P +RGDH  T+ V IP RIS+
Sbjct: 292 PTVDSKAGLEEEAELTIPAGSQPGTVLTLEGKGVPRLGNPMLRGDHKITLVVEIPTRISS 351

Query: 422 KERELLEELASL 433
           +ERELL  LA L
Sbjct: 352 EERELLMRLAEL 363

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)

>sp|Q55505|DNAJ1_SYNY3 Chaperone protein DnaJ 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=dnaJ1 PE=3 SV=1

 Score =  370 bits (949), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/362 (53%), Positives = 246/362 (67%), Gaps = 10/362 (2%)

Query: 77  GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRA 136
           GDYY TLGV + A   EIK AYR+LAR+YHPDVNKEPGA EKFKEI+ AYEVLS+ + R 
Sbjct: 3   GDYYQTLGVTRDADKDEIKRAYRRLARKYHPDVNKEPGAEEKFKEINRAYEVLSEPEIRQ 62

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPF----DLFETFFGPSMGGFPGMNQTGFRTRRRSTV 192
            YDQ+GEAGV    GGG+  +         D+FET FG       GM       RR +  
Sbjct: 63  RYDQFGEAGVS---GGGAQGFDVGNMGDFADIFETIFGGFG---GGMGGQQRGRRRANGP 116

Query: 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252
           T+G+DLR D+ L F E+IFG EKE  + HLE+C+VC GTGAK G+ ++ C TC G GQV 
Sbjct: 117 TRGDDLRLDLQLTFQEAIFGGEKEIRIPHLESCQVCEGTGAKPGTGVKTCGTCNGAGQVR 176

Query: 253 RTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312
           R  +TPFG F+QVS CP+C G GEVI + C  C+G GR +  K +K+ +P GV  G+ LR
Sbjct: 177 RATRTPFGSFAQVSACPTCNGSGEVIEQKCEACNGVGRKQETKKLKITIPAGVDDGTRLR 236

Query: 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG 372
           V  EGDAG RGGP GDLYV+L VE      R+G+++ S + +SYL AI+G  ++V TV+G
Sbjct: 237 VGKEGDAGLRGGPAGDLYVFLMVETDKHFVREGMNIRSNLEVSYLQAILGCRLEVDTVDG 296

Query: 373 ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELAS 432
            +EL +P GTQP  VL L  KG PKL   +IRGDHL TVKV IP RI+++ERELLE LA+
Sbjct: 297 KAELTIPAGTQPNTVLTLENKGVPKLGNATIRGDHLITVKVQIPTRINSEERELLERLAT 356

Query: 433 LR 434
           ++
Sbjct: 357 IK 358

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q7VEJ6|DNAJ_PROMA Chaperone protein DnaJ OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=dnaJ PE=3 SV=1

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/354 (51%), Positives = 250/354 (70%), Gaps = 5/354 (1%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           D+Y TLGV ++A    +K AYR+LARQYHPD+NKE GA E+FKEI  AYEVL D +KRA 
Sbjct: 3   DFYDTLGVNRNADADSLKRAYRRLARQYHPDINKEAGAEERFKEIGRAYEVLGDPEKRAR 62

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGED 197
           YDQ+GEAG+  + G           D+FETFF    G       +G RT+RR    +G+D
Sbjct: 63  YDQFGEAGLGGSAGMPDMGDMGGFADIFETFFSGFGG----PGSSGARTQRRGP-QQGDD 117

Query: 198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQT 257
           LRYD+ ++F++++FG E+E ++ HLETC+VC GTGAK G+    CSTCGG GQV R  +T
Sbjct: 118 LRYDLTIDFNQAVFGQEREIKIPHLETCDVCRGTGAKPGTGPTTCSTCGGAGQVRRATRT 177

Query: 258 PFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG 317
           PFG F+QVS CP+C G G+VIS+ C+ C G+G  +++K +++ +P GV TG+ LRV GEG
Sbjct: 178 PFGSFTQVSDCPTCSGSGQVISDSCQSCGGQGVKQVRKKLRINIPAGVDTGTRLRVSGEG 237

Query: 318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQ 377
           +AGPRGGP GDLYV+L V+    ++RDG+++ S +++SYL AI+G  ++V TV+G + LQ
Sbjct: 238 NAGPRGGPSGDLYVFLKVKSHARLKRDGLNIHSEVNVSYLQAILGDTIEVDTVDGPTTLQ 297

Query: 378 VPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELA 431
           +P GTQP  VL+L  KG PKL  P  RG+H  +V + IP+R++  E+ LLE+LA
Sbjct: 298 IPSGTQPSAVLILDNKGIPKLGNPVARGNHCISVNIKIPSRLTDDEKILLEKLA 351

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539)

>sp|Q5N0G1|DNAJ_SYNP6 Chaperone protein DnaJ OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dnaJ PE=3 SV=1

 Score =  364 bits (934), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/369 (50%), Positives = 247/369 (66%), Gaps = 23/369 (6%)

Query: 76  SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
           + DYY  LGV + A   EIK AYR+LAR+YHPDVNKEPGA +KFKEI+ AYEVLS+ + R
Sbjct: 2   AADYYQLLGVARDADKDEIKRAYRRLARKYHPDVNKEPGAEDKFKEINRAYEVLSEPETR 61

Query: 136 AMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFR---------- 185
           A YDQ+G            +  +      F+ F    MGGF  + +T F           
Sbjct: 62  ARYDQFG-----------EAGVSGAGAAGFQDF--GDMGGFADIFETFFSGFGGMGGQQA 108

Query: 186 TRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTC 245
           + RR   T+GEDLR D+ L+F ++IFG EKE  ++H ETC  C G+GAK G++ + C+TC
Sbjct: 109 SARRRGPTRGEDLRLDLKLDFRDAIFGGEKEIRVTHEETCGTCQGSGAKAGTRPQTCTTC 168

Query: 246 GGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGV 305
           GG GQV R  +TPFG F+QVSVCP+C G G++I + C  C G GR+R  K +K+ +P GV
Sbjct: 169 GGAGQVRRATRTPFGSFTQVSVCPTCEGSGQMIVDKCDDCGGAGRLRRPKKLKINIPAGV 228

Query: 306 STGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVV 365
            +G+ LRV  EGDAG RGGPPGDLYVYL V E    +R+GI+LFST++ISYL AI+G  +
Sbjct: 229 DSGTRLRVANEGDAGLRGGPPGDLYVYLFVSEDTQFRREGINLFSTVTISYLQAILGCSL 288

Query: 366 KVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERE 425
           +V TV+G +EL +PPGTQP  VL +  KG P+L  P  RG+ L T+KV IP +ISA+ERE
Sbjct: 289 EVATVDGPTELIIPPGTQPNAVLTVEGKGVPRLGNPVARGNLLVTIKVEIPTKISAEERE 348

Query: 426 LLEELASLR 434
           LLE++  +R
Sbjct: 349 LLEKVVQIR 357

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	466
255553237	511	chaperone protein DNAj, putative [Ricinu	0.896	0.818	0.824	0.0
224134931	492	predicted protein [Populus trichocarpa]	0.806	0.764	0.882	0.0
359482375	489	PREDICTED: chaperone protein DnaJ-like [	0.811	0.773	0.862	0.0
357455281	496	Chaperone protein dnaJ [Medicago truncat	0.901	0.846	0.791	0.0
356554947	489	PREDICTED: chaperone protein DnaJ-like i	0.935	0.891	0.766	0.0
356554945	493	PREDICTED: chaperone protein DnaJ-like i	0.935	0.884	0.766	0.0
1707657	498	DnaJ homologue [Pisum sativum]	0.922	0.863	0.774	0.0
449468934	505	PREDICTED: chaperone protein DnaJ-like [	0.896	0.827	0.824	0.0
297839937	492	hypothetical protein ARALYDRAFT_895995 [	0.886	0.839	0.761	0.0
18412605	500	molecular chaperone Hsp40/DnaJ-like prot	0.890	0.83	0.751	0.0

>gi|255553237|ref|XP_002517661.1| chaperone protein DNAj, putative [Ricinus communis] gi|223543293|gb|EEF44825.1| chaperone protein DNAj, putative [Ricinus communis]

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/421 (82%), Positives = 382/421 (90%), Gaps = 3/421 (0%)

Query: 32  HLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASG 91
           HL SHK F++L L++    F     +SS++ SS  R+G  +  ASGDYYATLGVPKSA+ 
Sbjct: 48  HLWSHKKFSSLALTS-PLKFKTKTASSSSSSSSNNRYGPEI-NASGDYYATLGVPKSATS 105

Query: 92  KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG 151
           KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD KR+MYD+YGEAGVKS VG
Sbjct: 106 KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDNKRSMYDRYGEAGVKSAVG 165

Query: 152 GGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIF 211
           G SSAYTTNPFDLFETFFG SMGGFPG+ +TGF TRRRSTVTKGEDLRYDI LEFSE+IF
Sbjct: 166 GASSAYTTNPFDLFETFFGSSMGGFPGV-ETGFGTRRRSTVTKGEDLRYDITLEFSEAIF 224

Query: 212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSC 271
           GAEKEF+LSHLETCEVCTGTGAK+GSKMRICSTCGGRGQVMRT+QTPFGLFSQVSVCP+C
Sbjct: 225 GAEKEFDLSHLETCEVCTGTGAKIGSKMRICSTCGGRGQVMRTEQTPFGLFSQVSVCPTC 284

Query: 272 GGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYV 331
           GGEGEVISEYCRKCSGEGRIR++KNIKVKVPPGVSTGSILRV GEGDAGPRGGPPGDL+V
Sbjct: 285 GGEGEVISEYCRKCSGEGRIRVRKNIKVKVPPGVSTGSILRVAGEGDAGPRGGPPGDLFV 344

Query: 332 YLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLA 391
           YLDV+EI GIQRDGI+L STI+ISYLDAI+G VVKVKTVEG+S+LQ+  GTQPGDVLVLA
Sbjct: 345 YLDVQEISGIQRDGINLNSTITISYLDAILGAVVKVKTVEGMSDLQILAGTQPGDVLVLA 404

Query: 392 KKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRNTTGSRTRTRPKTQAAT 451
           KKGAPKLNKPSIRGDHLFT+KVTIP+R SAKERELLEELASL NTT S++RTR KT  A+
Sbjct: 405 KKGAPKLNKPSIRGDHLFTIKVTIPSRTSAKERELLEELASLSNTTSSQSRTRTKTPPAS 464

Query: 452 K 452
           +
Sbjct: 465 R 465

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134931|ref|XP_002327525.1| predicted protein [Populus trichocarpa] gi|222836079|gb|EEE74500.1| predicted protein [Populus trichocarpa]

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/376 (88%), Positives = 355/376 (94%)

Query: 73  VCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD 132
           V ASGDYYATLGVPKSA+ KEIKAAYR+LARQYHPDVNKEPGATEKFKEIS+AYEVLSDD
Sbjct: 65  VYASGDYYATLGVPKSATSKEIKAAYRRLARQYHPDVNKEPGATEKFKEISSAYEVLSDD 124

Query: 133 KKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTV 192
           KKR++YDQYGEAGVKSTVGG SSAYTTNPFDLFETFFG SMGGFPGM QTGF+TRRRSTV
Sbjct: 125 KKRSLYDQYGEAGVKSTVGGPSSAYTTNPFDLFETFFGASMGGFPGMEQTGFKTRRRSTV 184

Query: 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252
           TKGED+RYDI LEFSE+IFGAEKEFELSHLETCEVC GTGAKMGSKMRICSTCGGRGQVM
Sbjct: 185 TKGEDIRYDISLEFSEAIFGAEKEFELSHLETCEVCAGTGAKMGSKMRICSTCGGRGQVM 244

Query: 253 RTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312
           RT+QTPFGLFSQVSVCP+CGG+GEVISEYCRKCSGEGRIR+KKNIKVKVPPGV  GSILR
Sbjct: 245 RTEQTPFGLFSQVSVCPNCGGDGEVISEYCRKCSGEGRIRVKKNIKVKVPPGVGAGSILR 304

Query: 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG 372
           V  EGDAGPRGGP GDLYVYLDVEEI GIQRDGI+L STISISY DAI+GTVVKVKTVEG
Sbjct: 305 VAREGDAGPRGGPLGDLYVYLDVEEIRGIQRDGINLTSTISISYADAILGTVVKVKTVEG 364

Query: 373 ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELAS 432
           +SELQ+PPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFT+KVTIP R+SAKERELLEELAS
Sbjct: 365 MSELQIPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTIKVTIPKRVSAKERELLEELAS 424

Query: 433 LRNTTGSRTRTRPKTQ 448
           L +   SR+RT+P ++
Sbjct: 425 LSDKNISRSRTQPASK 440

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482375|ref|XP_002265060.2| PREDICTED: chaperone protein DnaJ-like [Vitis vinifera] gi|297743480|emb|CBI36347.3| unnamed protein product [Vitis vinifera]

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/378 (86%), Positives = 357/378 (94%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKK 134
           AS DYY+TLGVPKSA+ KEIKAAYRKLARQYHPDVNK+PGATEKFKEISAAYEVLSDDKK
Sbjct: 67  ASSDYYSTLGVPKSANSKEIKAAYRKLARQYHPDVNKQPGATEKFKEISAAYEVLSDDKK 126

Query: 135 RAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTK 194
           RA+YDQ+GEAGVKS VGG + AYTTNPFDLFETFFGPSMGGF GM+Q GFRTRRR+TV+K
Sbjct: 127 RALYDQFGEAGVKSGVGGQAGAYTTNPFDLFETFFGPSMGGFSGMDQAGFRTRRRTTVSK 186

Query: 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
           GED+RYD+ L+FSE+IFGAEKEFELSHLETCEVCTGTGAK+GSKMRICSTCGGRGQVMRT
Sbjct: 187 GEDIRYDMTLKFSEAIFGAEKEFELSHLETCEVCTGTGAKIGSKMRICSTCGGRGQVMRT 246

Query: 255 DQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314
           +QTPFGLFSQVSVCP+CGG+GEVISEYCRKCSGEGRIR+KK+IKVKVPPGVS GSILRV 
Sbjct: 247 EQTPFGLFSQVSVCPTCGGDGEVISEYCRKCSGEGRIRVKKDIKVKVPPGVSKGSILRVA 306

Query: 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS 374
           GEGDAG RGGPPGDL+VYLDVEEIP IQRDGI+L ST+++SYLDAI+G VVKVKTVEG++
Sbjct: 307 GEGDAGLRGGPPGDLFVYLDVEEIPEIQRDGINLCSTVTVSYLDAILGAVVKVKTVEGVT 366

Query: 375 ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434
           ELQ+P GTQPGDVLVLAKKGAPKLN+P+IRGDHLFTVKVTIPNRISAKERELLEELA L 
Sbjct: 367 ELQIPSGTQPGDVLVLAKKGAPKLNRPTIRGDHLFTVKVTIPNRISAKERELLEELAFLS 426

Query: 435 NTTGSRTRTRPKTQAATK 452
           N T SR+RTRPK Q ATK
Sbjct: 427 NNTSSRSRTRPKAQPATK 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455281|ref|XP_003597921.1| Chaperone protein dnaJ [Medicago truncatula] gi|355486969|gb|AES68172.1| Chaperone protein dnaJ [Medicago truncatula]

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/427 (79%), Positives = 375/427 (87%), Gaps = 7/427 (1%)

Query: 24  SSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGR--SVVCASGDYYA 81
           S F AGG HLRSH NF    LS  S PF  +  NS+   SS  R  R  +V  AS DYY+
Sbjct: 18  SCFCAGGIHLRSHNNF----LSIHSSPFPSTFSNSNTKFSSGTRPKRFHTVFAASSDYYS 73

Query: 82  TLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQY 141
           TLGVPKSA+GKEIKAAYR+LARQYHPDVNKEPGAT+KFKEIS AYEVLSDDKKRA+YDQY
Sbjct: 74  TLGVPKSATGKEIKAAYRRLARQYHPDVNKEPGATDKFKEISNAYEVLSDDKKRALYDQY 133

Query: 142 GEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYD 201
           GEAGVKS+VGGGSSAY TNPFDLFETFFGP+MGGF  M+ +GF TRRRSTVTKGED+RYD
Sbjct: 134 GEAGVKSSVGGGSSAYATNPFDLFETFFGPNMGGFSTMDPSGFGTRRRSTVTKGEDIRYD 193

Query: 202 IVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGL 261
             LEFSE+IFG EKEFEL HLETC+ CTGTGAK+GSKMR+CSTCGGRGQVMRT+QTPFGL
Sbjct: 194 FSLEFSEAIFGTEKEFELFHLETCDACTGTGAKLGSKMRVCSTCGGRGQVMRTEQTPFGL 253

Query: 262 FSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGP 321
           FSQVSVCP+CGG+GEVISE CRKCSGEGRIR+KKNIKVKVPPGVS GSILRV GEGDAGP
Sbjct: 254 FSQVSVCPNCGGDGEVISESCRKCSGEGRIRVKKNIKVKVPPGVSAGSILRVTGEGDAGP 313

Query: 322 RGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPG 381
           RGGPPGDLYVYL+V EIPGIQRD ++L STISISYL+AI+G+VVKVKTVEG SELQ+P G
Sbjct: 314 RGGPPGDLYVYLNVLEIPGIQRDDVNLRSTISISYLEAILGSVVKVKTVEGTSELQIPAG 373

Query: 382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRNTTGSRT 441
           TQPGDVLVLA+KG PKLN+PSIRGDHLFTVKVTIP RIS+KERE+LEELASL N + S +
Sbjct: 374 TQPGDVLVLARKGVPKLNRPSIRGDHLFTVKVTIPKRISSKEREVLEELASLGNPS-SHS 432

Query: 442 RTRPKTQ 448
           ++RP+TQ
Sbjct: 433 KSRPRTQ 439

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554947|ref|XP_003545802.1| PREDICTED: chaperone protein DnaJ-like isoform 2 [Glycine max]

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/446 (76%), Positives = 385/446 (86%), Gaps = 10/446 (2%)

Query: 5   ATTLTLLPHPSLSFSHSSSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSS 64
            TTL+LLP         S+     G  HLRSH +F ++  ++ S     S ++  N  S 
Sbjct: 3   VTTLSLLP--------PSTRPCFCGTVHLRSHNSFLSIHSTSSSSFLSFSSISIPN-HSP 53

Query: 65  TYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISA 124
           T R   +V+ +S DYY+TLGVPKSA+GKEIKAAYR+LARQYHPDVNKEPGATEKFKEISA
Sbjct: 54  TRRPFHTVLASSSDYYSTLGVPKSATGKEIKAAYRRLARQYHPDVNKEPGATEKFKEISA 113

Query: 125 AYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGF 184
           AYEVLSDDKKRA+YDQYGEAGVKS VGGGSSAYTTNPFDLFETFFGPSMGGF GM+ TGF
Sbjct: 114 AYEVLSDDKKRALYDQYGEAGVKSAVGGGSSAYTTNPFDLFETFFGPSMGGFGGMDPTGF 173

Query: 185 RTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICST 244
            TRRRSTVTKGED+RY+  LEFSE+IFG EKEFELSHLETCEVCTGTGAK+GSKMR+CST
Sbjct: 174 GTRRRSTVTKGEDIRYNFSLEFSEAIFGKEKEFELSHLETCEVCTGTGAKIGSKMRVCST 233

Query: 245 CGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPG 304
           CGGRGQVMRT+QTPFGLFSQVSVCP+CGG+GEVISEYCRKC+GEGRIR+KKNIKVKVPPG
Sbjct: 234 CGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISEYCRKCNGEGRIRVKKNIKVKVPPG 293

Query: 305 VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTV 364
           VS+GSILRV GEGDAGPRGGPPGDLYVYLDV+EIPGIQRD I+L S +SISYLDAI G V
Sbjct: 294 VSSGSILRVTGEGDAGPRGGPPGDLYVYLDVQEIPGIQRDDINLVSMLSISYLDAIRGAV 353

Query: 365 VKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKER 424
           VKVKTVEGISELQ+P GTQPGDVLVLA+KG PKLNKPSIRGDHLFTVKVTIP RIS KER
Sbjct: 354 VKVKTVEGISELQIPAGTQPGDVLVLARKGVPKLNKPSIRGDHLFTVKVTIPKRISTKER 413

Query: 425 ELLEELASLRNTTGSRTRTRPKTQAA 450
           EL+EELA+L + +  R+++RP+T ++
Sbjct: 414 ELIEELATLGDAS-RRSKSRPRTHSS 438

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554945|ref|XP_003545801.1| PREDICTED: chaperone protein DnaJ-like isoform 1 [Glycine max]

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/446 (76%), Positives = 385/446 (86%), Gaps = 10/446 (2%)

Query: 5   ATTLTLLPHPSLSFSHSSSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSS 64
            TTL+LLP         S+     G  HLRSH +F ++  ++ S     S ++  N  S 
Sbjct: 3   VTTLSLLP--------PSTRPCFCGTVHLRSHNSFLSIHSTSSSSFLSFSSISIPN-HSP 53

Query: 65  TYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISA 124
           T R   +V+ +S DYY+TLGVPKSA+GKEIKAAYR+LARQYHPDVNKEPGATEKFKEISA
Sbjct: 54  TRRPFHTVLASSSDYYSTLGVPKSATGKEIKAAYRRLARQYHPDVNKEPGATEKFKEISA 113

Query: 125 AYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGF 184
           AYEVLSDDKKRA+YDQYGEAGVKS VGGGSSAYTTNPFDLFETFFGPSMGGF GM+ TGF
Sbjct: 114 AYEVLSDDKKRALYDQYGEAGVKSAVGGGSSAYTTNPFDLFETFFGPSMGGFGGMDPTGF 173

Query: 185 RTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICST 244
            TRRRSTVTKGED+RY+  LEFSE+IFG EKEFELSHLETCEVCTGTGAK+GSKMR+CST
Sbjct: 174 GTRRRSTVTKGEDIRYNFSLEFSEAIFGKEKEFELSHLETCEVCTGTGAKIGSKMRVCST 233

Query: 245 CGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPG 304
           CGGRGQVMRT+QTPFGLFSQVSVCP+CGG+GEVISEYCRKC+GEGRIR+KKNIKVKVPPG
Sbjct: 234 CGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISEYCRKCNGEGRIRVKKNIKVKVPPG 293

Query: 305 VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTV 364
           VS+GSILRV GEGDAGPRGGPPGDLYVYLDV+EIPGIQRD I+L S +SISYLDAI G V
Sbjct: 294 VSSGSILRVTGEGDAGPRGGPPGDLYVYLDVQEIPGIQRDDINLVSMLSISYLDAIRGAV 353

Query: 365 VKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKER 424
           VKVKTVEGISELQ+P GTQPGDVLVLA+KG PKLNKPSIRGDHLFTVKVTIP RIS KER
Sbjct: 354 VKVKTVEGISELQIPAGTQPGDVLVLARKGVPKLNKPSIRGDHLFTVKVTIPKRISTKER 413

Query: 425 ELLEELASLRNTTGSRTRTRPKTQAA 450
           EL+EELA+L + +  R+++RP+T ++
Sbjct: 414 ELIEELATLGDAS-RRSKSRPRTHSS 438

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1707657|emb|CAA96305.1| DnaJ homologue [Pisum sativum]

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/431 (77%), Positives = 373/431 (86%), Gaps = 1/431 (0%)

Query: 21  SSSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYY 80
           ++ S F A G H RSH             PF  +  NS++  S+  +   +V  AS DYY
Sbjct: 14  TTHSCFCASGIHFRSHTTTNNFLSIHSPSPFPSTFSNSNSKFSARRKRFHTVFAASSDYY 73

Query: 81  ATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140
           ATLGVPKSA+ K+IKAAYR+LARQYHPDVNKEPGAT+KFKEIS AYEVLSDDKKRA+YDQ
Sbjct: 74  ATLGVPKSATVKDIKAAYRRLARQYHPDVNKEPGATDKFKEISNAYEVLSDDKKRALYDQ 133

Query: 141 YGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRY 200
           YGEAGVKS+VGGGSSAY TNPFDLFETFFG +MGGF GM+ TGF TRRRSTVTKGED+RY
Sbjct: 134 YGEAGVKSSVGGGSSAYATNPFDLFETFFGSNMGGFGGMDPTGFGTRRRSTVTKGEDIRY 193

Query: 201 DIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFG 260
           D  LEFSE+IFGAEKEFEL HLETCEVCTGTGAK+GSKMR+CSTCGGRGQVMRT+QTPFG
Sbjct: 194 DFSLEFSEAIFGAEKEFELFHLETCEVCTGTGAKLGSKMRVCSTCGGRGQVMRTEQTPFG 253

Query: 261 LFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAG 320
           LFSQVSVCP+CGG+GEVISE CRKCSG GRIR+KKN+KVKVPPGVS+GSILRV GEGDAG
Sbjct: 254 LFSQVSVCPNCGGDGEVISENCRKCSGAGRIRVKKNMKVKVPPGVSSGSILRVTGEGDAG 313

Query: 321 PRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPP 380
           PRGGPPGDLYVYLDV EIPGIQRD I+L STISI+YLDAI+G+VVKVKTVEG SELQ+P 
Sbjct: 314 PRGGPPGDLYVYLDVLEIPGIQRDDINLRSTISITYLDAILGSVVKVKTVEGTSELQIPS 373

Query: 381 GTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRNTTGSR 440
           GTQPGDVLVLAKKG PKLN+PSIRGDHLFTVKVTIP RIS+KERE+LEELASL  T+ S 
Sbjct: 374 GTQPGDVLVLAKKGVPKLNRPSIRGDHLFTVKVTIPKRISSKEREVLEELASLGGTS-SH 432

Query: 441 TRTRPKTQAAT 451
           +R+RP+TQ +T
Sbjct: 433 SRSRPRTQPST 443

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468934|ref|XP_004152176.1| PREDICTED: chaperone protein DnaJ-like [Cucumis sativus] gi|449522377|ref|XP_004168203.1| PREDICTED: chaperone protein DnaJ-like [Cucumis sativus]

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/422 (82%), Positives = 378/422 (89%), Gaps = 4/422 (0%)

Query: 29  GGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKS 88
           GGT LR HKNF ++   + +          +   SS  R G  VVCASGDYYATLG+PKS
Sbjct: 33  GGTQLRFHKNFLSVHSYSFNSSPSSPNSRFNKRVSSRRRLGL-VVCASGDYYATLGIPKS 91

Query: 89  ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148
           A+ KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRA+YDQYGEAGVKS
Sbjct: 92  ANSKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRALYDQYGEAGVKS 151

Query: 149 TVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSE 208
           TVGG SSAYTTNPFDLFETFFGPSMGGF GM+ TGFRTRR ST+TKGED+RYDI L  SE
Sbjct: 152 TVGG-SSAYTTNPFDLFETFFGPSMGGFGGMDPTGFRTRRSSTLTKGEDIRYDINLGSSE 210

Query: 209 SIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVC 268
           +IFG+EKEFELSHLETCEVCTGTG+K+GSKMRICSTCGGRGQVMRT+QTPFGLFSQVSVC
Sbjct: 211 AIFGSEKEFELSHLETCEVCTGTGSKVGSKMRICSTCGGRGQVMRTEQTPFGLFSQVSVC 270

Query: 269 PSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGD 328
           P+CGG GEVIS++CRKCSGEGRIR+KKNIKVKVPPGVS GSILRV GEGDAGPRGGPPGD
Sbjct: 271 PNCGGNGEVISDFCRKCSGEGRIRVKKNIKVKVPPGVSAGSILRVAGEGDAGPRGGPPGD 330

Query: 329 LYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVL 388
           L+VYLDVEEIPGIQRDGI+L+STI+ISYLDAIMG+VVKVKTVEG++ELQ+PPGTQPGDVL
Sbjct: 331 LFVYLDVEEIPGIQRDGINLYSTIAISYLDAIMGSVVKVKTVEGMAELQIPPGTQPGDVL 390

Query: 389 VLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRNT--TGSRTRTRPK 446
           VLAKKG PKLNKPSIRGDHLFT+KVTIPNRIS KERELLEELASL N   TGSR RTR K
Sbjct: 391 VLAKKGVPKLNKPSIRGDHLFTIKVTIPNRISEKERELLEELASLSNNAGTGSRFRTRQK 450

Query: 447 TQ 448
           +Q
Sbjct: 451 SQ 452

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839937|ref|XP_002887850.1| hypothetical protein ARALYDRAFT_895995 [Arabidopsis lyrata subsp. lyrata] gi|297333691|gb|EFH64109.1| hypothetical protein ARALYDRAFT_895995 [Arabidopsis lyrata subsp. lyrata]

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/427 (76%), Positives = 368/427 (86%), Gaps = 14/427 (3%)

Query: 22  SSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYA 81
           S SS   GGT+LR HK+F +L+ S+   P+   +  S             V  ASGDYYA
Sbjct: 26  SLSSNFDGGTNLRYHKSFLSLSSSS---PYRNRRCRS-----------LVVFAASGDYYA 71

Query: 82  TLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQY 141
           TLGVPKSA+ KEIKAAYR+LARQYHPDVNKEPGAT+KFKEISAAYEVLSD++KRA+YDQY
Sbjct: 72  TLGVPKSANNKEIKAAYRRLARQYHPDVNKEPGATDKFKEISAAYEVLSDEQKRALYDQY 131

Query: 142 GEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYD 201
           GEAGVKSTVGG S  YTTNPFDLFETFFG SMGGFPG++Q  F   RRS VTKGEDLRYD
Sbjct: 132 GEAGVKSTVGGASGTYTTNPFDLFETFFGASMGGFPGVDQADFGRTRRSRVTKGEDLRYD 191

Query: 202 IVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGL 261
           I LE SE+IFG+EKEF+L+HLETCE C GTGAK GSKMRICSTCGGRGQVMRT+QTPFG+
Sbjct: 192 ITLELSEAIFGSEKEFDLTHLETCEACAGTGAKAGSKMRICSTCGGRGQVMRTEQTPFGM 251

Query: 262 FSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGP 321
           FSQVS+CP+CGG+GEVISE CRKCSGEGR+R KK+IKVK+PPGVS GSILRV GEGD+GP
Sbjct: 252 FSQVSICPNCGGDGEVISENCRKCSGEGRVRTKKSIKVKIPPGVSAGSILRVAGEGDSGP 311

Query: 322 RGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPG 381
           RGGPPGDLYVYLDVE++ GIQRDGI+L ST+SISYLDAI+G VVKVKTVEG +ELQ+PPG
Sbjct: 312 RGGPPGDLYVYLDVEDVRGIQRDGINLLSTLSISYLDAILGAVVKVKTVEGDTELQIPPG 371

Query: 382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRNTTGSRT 441
           TQPGDVLVLAKKG PKLN+PSIRGDHLFTVKV+IPN+ISA ERELLEELASL++T+ +R+
Sbjct: 372 TQPGDVLVLAKKGVPKLNRPSIRGDHLFTVKVSIPNQISAGERELLEELASLKDTSSNRS 431

Query: 442 RTRPKTQ 448
           RTR K Q
Sbjct: 432 RTRAKPQ 438

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412605|ref|NP_565227.1| molecular chaperone Hsp40/DnaJ-like protein [Arabidopsis thaliana] gi|30699481|ref|NP_849910.1| molecular chaperone Hsp40/DnaJ-like protein [Arabidopsis thaliana] gi|30699483|ref|NP_849911.1| molecular chaperone Hsp40/DnaJ-like protein [Arabidopsis thaliana] gi|110739057|dbj|BAF01446.1| hypothetical protein [Arabidopsis thaliana] gi|332198224|gb|AEE36345.1| molecular chaperone Hsp40/DnaJ-like protein [Arabidopsis thaliana] gi|332198225|gb|AEE36346.1| molecular chaperone Hsp40/DnaJ-like protein [Arabidopsis thaliana] gi|332198226|gb|AEE36347.1| molecular chaperone Hsp40/DnaJ-like protein [Arabidopsis thaliana]

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/431 (75%), Positives = 372/431 (86%), Gaps = 16/431 (3%)

Query: 21  SSSSSFLAGGTHLRSHKNFAALTLSADS-CPFGGSKLNSSNARSSTYRFGRSVV--CASG 77
           S+ S+F  GG++ R HK+F +L+ S+ S  P+               R GRS+V    SG
Sbjct: 28  SNFSAFSDGGSNFRYHKSFLSLSSSSSSSTPY-------------RNRRGRSLVVFATSG 74

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYYATLGV KSA+ KEIKAAYR+LARQYHPDVNKEPGATEKFKEISAAYEVLSD++KRA+
Sbjct: 75  DYYATLGVSKSANNKEIKAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDEQKRAL 134

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGED 197
           YDQYGEAGVKSTVGG S  YT+NPFDLFETFFG SMGGFPGM+Q  F   RRS VTKGED
Sbjct: 135 YDQYGEAGVKSTVGGASGPYTSNPFDLFETFFGASMGGFPGMDQADFGRTRRSRVTKGED 194

Query: 198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQT 257
           LRYDI LE SE+IFG+EKEF+L+HLETCE C GTGAK GSKMRICSTCGGRGQVMRT+QT
Sbjct: 195 LRYDITLELSEAIFGSEKEFDLTHLETCEACAGTGAKAGSKMRICSTCGGRGQVMRTEQT 254

Query: 258 PFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG 317
           PFG+FSQVS+CP+CGG+GEVISE CRKCSGEGR+R+KK+IKVK+PPGVS GSILRV GEG
Sbjct: 255 PFGMFSQVSICPNCGGDGEVISENCRKCSGEGRVRIKKSIKVKIPPGVSAGSILRVAGEG 314

Query: 318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQ 377
           D+GPRGGPPGDLYVYLDVE++ GI+RDGI+L ST+SISYLDAI+G VVKVKTVEG +ELQ
Sbjct: 315 DSGPRGGPPGDLYVYLDVEDVRGIERDGINLLSTLSISYLDAILGAVVKVKTVEGDTELQ 374

Query: 378 VPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRNTT 437
           +PPGTQPGDVLVLAKKG PKLN+PSIRGDHLFTVKV++PN+ISA ERELLEELASL++T+
Sbjct: 375 IPPGTQPGDVLVLAKKGVPKLNRPSIRGDHLFTVKVSVPNQISAGERELLEELASLKDTS 434

Query: 438 GSRTRTRPKTQ 448
            +R+RTR K Q
Sbjct: 435 SNRSRTRAKPQ 445

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	466
TAIR|locus:2016234	500	AT1G80030 [Arabidopsis thalian	0.881	0.822	0.681	5.5e-148
TAIR|locus:2088585	517	AT3G17830 [Arabidopsis thalian	0.824	0.742	0.436	3.6e-89
TAIR|locus:2140035	447	AT4G39960 [Arabidopsis thalian	0.787	0.821	0.489	5.3e-88
TAIR|locus:2041258	442	AT2G22360 [Arabidopsis thalian	0.781	0.823	0.490	6.7e-88
TIGR_CMR|CHY_0416	381	CHY_0416 "chaperone protein dn	0.725	0.887	0.406	6.2e-62
TIGR_CMR|BA_4538	371	BA_4538 "chaperone protein dna	0.716	0.900	0.390	2.7e-61
TIGR_CMR|GSU_0034	373	GSU_0034 "chaperone protein dn	0.701	0.876	0.417	3.9e-60
UNIPROTKB|P95830	378	dnaJ "Chaperone protein DnaJ"	0.710	0.875	0.385	8.1e-60
TIGR_CMR|DET_1398	356	DET_1398 "co-chaperone protein	0.710	0.929	0.365	1.5e-58
UNIPROTKB|P08622	376	dnaJ [Escherichia coli K-12 (t	0.701	0.869	0.377	4.8e-55

TAIR|locus:2016234 AT1G80030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1445 (513.7 bits), Expect = 5.5e-148, P = 5.5e-148
 Identities = 284/417 (68%), Positives = 329/417 (78%)

Query:    38 NFAALTLSADSCPFGGS--KLNSSNARSSTYRF--GRSVV--CASGDYYATLGVPKSASG 91
             NF+A +    +  +  S   L+SS++ S+ YR   GRS+V    SGDYYATLGV KSA+ 
Sbjct:    29 NFSAFSDGGSNFRYHKSFLSLSSSSSSSTPYRNRRGRSLVVFATSGDYYATLGVSKSANN 88

Query:    92 KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG 151
             KEIKAAYR+LARQYHPDVNKEPGATEKFKEISAAYEVLSD++KRA+YDQYGEAGVKSTVG
Sbjct:    89 KEIKAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDEQKRALYDQYGEAGVKSTVG 148

Query:   152 GGSSAYTTNPFDLFETXXXXXXXXXXXXNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIF 211
             G S  YT+NPFDLFET            +Q  F   RRS VTKGEDLRYDI LE SE+IF
Sbjct:   149 GASGPYTSNPFDLFETFFGASMGGFPGMDQADFGRTRRSRVTKGEDLRYDITLELSEAIF 208

Query:   212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSC 271
             G+EKEF+L+HLETCE C GTGAK GSKMRICSTCGGRGQVMRT+QTPFG+FSQVS+CP+C
Sbjct:   209 GSEKEFDLTHLETCEACAGTGAKAGSKMRICSTCGGRGQVMRTEQTPFGMFSQVSICPNC 268

Query:   272 GGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYV 331
             GG+GEVISE CRKCSGEGR+R+KK+IKVK+PPGVS GSILRV              DLYV
Sbjct:   269 GGDGEVISENCRKCSGEGRVRIKKSIKVKIPPGVSAGSILRVAGEGDSGPRGGPPGDLYV 328

Query:   332 YLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLA 391
             YLDVE++ GI+RDGI+L ST+SISYLDAI+G VVKVKTVEG +ELQ+PPGTQPGDVLVLA
Sbjct:   329 YLDVEDVRGIERDGINLLSTLSISYLDAILGAVVKVKTVEGDTELQIPPGTQPGDVLVLA 388

Query:   392 KKGAPKLNKPSIRGDHLFTVKVTIPNRIXXXXXXXXXXXXXXXNTTGSRTRTRPKTQ 448
             KKG PKLN+PSIRGDHLFTVKV++PN+I               +T+ +R+RTR K Q
Sbjct:   389 KKGVPKLNRPSIRGDHLFTVKVSVPNQISAGERELLEELASLKDTSSNRSRTRAKPQ 445

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

TAIR|locus:2088585 AT3G17830 [Arabidopsis thaliana (taxid:3702)]

 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 172/394 (43%), Positives = 254/394 (64%)

Query:    63 SSTYRFGRSVVCASG-DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKE 121
             S  YR  R +  A+G D+Y+TL V ++A+ +EIK++YRKLAR+YHPD+NK PGA +KFK+
Sbjct:    48 SGGYR-RRVITMAAGTDHYSTLNVNRNATLQEIKSSYRKLARKYHPDMNKNPGAEDKFKQ 106

Query:   122 ISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYT-TNPFDLFETXXXXXXXXXXXXN 180
             ISAAYEVLSD++KR+ YD++GEAG++    G        +PFDL+               
Sbjct:   107 ISAAYEVLSDEEKRSAYDRFGEAGLEGDFNGSQDTSPGVDPFDLYSAFFGGSDGFFGGMG 166

Query:   181 QTG---FRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGS 237
             ++G   F    + ++    D+RYD+ L F E++FG ++E E+S+LETC+ C GTGAK  +
Sbjct:   167 ESGGMGFDFMNKRSLDL--DIRYDLRLSFEEAVFGVKREIEVSYLETCDGCGGTGAKSSN 224

Query:   238 KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNI 297
              ++ CS+C G+G+VM + +TPFG+ SQVS C  CGGEG+ I++ CRKC G GR+R +K +
Sbjct:   225 SIKQCSSCDGKGRVMNSQRTPFGIMSQVSTCSKCGGEGKTITDKCRKCIGNGRLRARKKM 284

Query:   298 KVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYL 357
              V VPPGVS  + +R+              DL++ L V+E  GI+R+G++L+S I+I + 
Sbjct:   285 DVVVPPGVSDRATMRIQGEGNMDKRSGRAGDLFIVLQVDEKRGIRREGLNLYSNINIDFT 344

Query:   358 DAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPN 417
             DAI+G   KV+TVEG  +L++PPGTQPGD + L +KG P  ++PSIRGDH F VK++IP 
Sbjct:   345 DAILGATTKVETVEGSMDLRIPPGTQPGDTVKLPRKGVPDTDRPSIRGDHCFVVKISIPK 404

Query:   418 RIXXXXXXXXXXXXXXXNTTGSR--TRTRPKTQA 449
             ++                ++ S   T TR + Q+
Sbjct:   405 KLSERERKLVEEFSSLRRSSSSTGPTETRQEEQS 438

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2140035 AT4G39960 [Arabidopsis thaliana (taxid:3702)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 182/372 (48%), Positives = 234/372 (62%)

Query:    48 SCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHP 107
             S PF    L   +  + + R  R  V A  D+Y+ LGV K+A+  EIK+AYRKLAR YHP
Sbjct:    57 SLPF--LSLTGVSPNTHSRRGARFTVRADTDFYSVLGVSKNATKAEIKSAYRKLARSYHP 114

Query:   108 DVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFET 167
             DVNK+ GA +KFKEIS AYE+LSDD+KR++YD+YGEAGVK    GG   Y+ NPFDLFE+
Sbjct:   115 DVNKDAGAEDKFKEISNAYEILSDDEKRSLYDRYGEAGVKGAGMGGMGDYS-NPFDLFES 173

Query:   168 XXXXXXXXXXXXNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV 227
                            G R  R S    GED  Y ++L F E++FG EKE E+S LE+C  
Sbjct:   174 LFEGMGGMGGMGGGMGSRGSR-SRAIDGEDEYYSLILNFKEAVFGIEKEIEISRLESCGT 232

Query:   228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSG 287
             C G+GAK G+K   C TCGG+GQV+ + +TP G+F QV  C  C G GE IS+ C  CSG
Sbjct:   233 CNGSGAKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE-ISKPCGACSG 291

Query:   288 EGRIRLKKNIKVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGID 347
             +GR+R  K I +KVP GV +GS LRV              DL+  ++V   P ++RD  +
Sbjct:   292 DGRVRRTKRISLKVPAGVDSGSRLRVRGEGNAGKRGGSPGDLFAVIEVIPDPVLKRDDTN 351

Query:   348 LFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDH 407
             +  T  ISY+DAI+GT +KV TV+G  +L+VP GTQP   LV+AKKG P LNK  +RGD 
Sbjct:   352 ILYTCKISYVDAILGTTLKVPTVDGEVDLKVPAGTQPSTTLVMAKKGVPVLNKSKMRGDQ 411

Query:   408 LFTVKVTIPNRI 419
             L  V+V IP R+
Sbjct:   412 LVRVQVEIPKRL 423

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2041258 AT2G22360 [Arabidopsis thaliana (taxid:3702)]

 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 184/375 (49%), Positives = 236/375 (62%)

Query:    45 SADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQ 104
             S  S PF      S N      R  R  V A  DYY+ LGV K+A+  EIK+AYRKLAR 
Sbjct:    54 SHGSLPFLSMTGMSRNMHPPR-RGSRFTVRADADYYSVLGVSKNATKAEIKSAYRKLARN 112

Query:   105 YHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDL 164
             YHPDVNK+PGA EKFKEIS AYEVLSDD+K+++YD+YGEAG+K   G G+  ++ NPFDL
Sbjct:   113 YHPDVNKDPGAEEKFKEISNAYEVLSDDEKKSLYDRYGEAGLKGAAGFGNGDFS-NPFDL 171

Query:   165 FETXXXXXXXXXXXXNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLET 224
             F++               G     RS    G+D  Y ++L F E++FG EKE E+S LE+
Sbjct:   172 FDSLFEGFGG--------GMGRGSRSRAVDGQDEYYTLILNFKEAVFGMEKEIEISRLES 223

Query:   225 CEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK 284
             C  C G+GAK G+K   C+TCGG+GQV+   +TP G+F QV  C SC G GE IS  C  
Sbjct:   224 CGTCEGSGAKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQVMTCSSCNGTGE-ISTPCGT 282

Query:   285 CSGEGRIRLKKNIKVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRD 344
             CSG+GR+R  K I +KVP GV +GS LRV              DL+V ++V   P ++RD
Sbjct:   283 CSGDGRVRKTKRISLKVPAGVDSGSRLRVRGEGNAGKRGGSPGDLFVVIEVIPDPILKRD 342

Query:   345 GIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIR 404
               ++  T  ISY+DAI+GT +KV TV+G  +L+VP GTQP   LV+AKKG P LNK ++R
Sbjct:   343 DTNILYTCKISYIDAILGTTLKVPTVDGTVDLKVPAGTQPSTTLVMAKKGVPVLNKSNMR 402

Query:   405 GDHLFTVKVTIPNRI 419
             GD L  V+V IP R+
Sbjct:   403 GDQLVRVQVEIPKRL 417

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TIGR_CMR|CHY_0416 CHY_0416 "chaperone protein dnaJ" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 141/347 (40%), Positives = 197/347 (56%)

Query:    78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRA 136
             DYY  LGV ++A+ +EIK AYRKLAR+YHPDVNK+ P A EKFKEI+ AYEVLSD +KRA
Sbjct:     4 DYYEILGVARNATPEEIKKAYRKLARKYHPDVNKDDPNAAEKFKEINEAYEVLSDPEKRA 63

Query:   137 MYDQYGEAGVKSTV---GGGSSAYTTNPFDLFETXXXXXXXXXXXXNQTGFRTRRRSTVT 193
              YDQ+G AGV       GG       N  D+F                +G R  R+  V 
Sbjct:    64 RYDQFGHAGVDGNFAGQGGFGGGAGINFEDIFSGFGGFGDLFDMVFG-SG-RKARQGPVP 121

Query:   194 KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMR 253
              G+D+   + L   E++FG EKE  ++  ETC  C G GA+ G+ +  C TC GRGQ+ +
Sbjct:   122 -GDDIEAVLELTLEEAVFGGEKELRVTRTETCGHCHGNGAEPGTPIITCPTCQGRGQIHQ 180

Query:   254 TDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313
               +T FG   +  VC +C GEG++    CR+C G G +R  ++I VK+PPG+  G  LR+
Sbjct:   181 EVKTLFGRMVRSQVCSTCRGEGKIPKTPCRECGGSGLVRKTRSITVKIPPGIDHGHRLRI 240

Query:   314 VXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI 373
                           DLYVY+ ++     +R+ I L     IS++ A +G  V++ T++G 
Sbjct:   241 AGGGEAGRFGGPPGDLYVYIKIKPHKLFKREDIHLKLEKEISFVQAALGAKVEIPTIDGG 300

Query:   374 SE-LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
             +E L++P GTQ G V  +  KG P +N  S RG+   TVKV  P ++
Sbjct:   301 TEILEIPEGTQTGTVFTIKGKGVPVVNG-SGRGNLYVTVKVVTPTKL 346

GO:0006457 "protein folding" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

TIGR_CMR|BA_4538 BA_4538 "chaperone protein dnaJ" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 134/343 (39%), Positives = 179/343 (52%)

Query:    78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
             DYY  LG+ K AS  EIK AYR+LA++YHPDV+KE  A EKFKE+  AYEVLSDD+KRA 
Sbjct:     5 DYYEVLGLSKGASKDEIKKAYRRLAKKYHPDVSKEENAIEKFKEVQEAYEVLSDDQKRAQ 64

Query:   138 YDQYGEAGVKSTVGG-GSSAYTTNPFDLFETXXXXXXXXXXXXNQTGFRTRRRSTVTKGE 196
             YDQ+G AG     GG G        F  FE                G R R  +   +G 
Sbjct:    65 YDQFGHAGANQGFGGFGGGGDFGGGFG-FEDIFSSFFGGG------GGRRRDPNAPRQGA 117

Query:   197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ 256
             DL+Y + LEF E+IFG E   E+   + C+ C G+GAK G+    C  C G GQV     
Sbjct:   118 DLQYQVTLEFEEAIFGKELNVEIPVEDPCDTCKGSGAKPGTSKETCKHCSGSGQVSVEQN 177

Query:   257 TPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVXX 316
             TPFG       C  C G G++I E C  C G G++R +K I VK+P G+  G  +RV   
Sbjct:   178 TPFGRIVNRQACSHCSGTGQMIKEKCTTCHGSGKVRKRKKINVKIPAGIDNGQQIRVSGK 237

Query:   317 XXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISEL 376
                        DLYV + V      +R+G  +   + +++    +G  V+V TV G  +L
Sbjct:   238 GEAGVNGGPAGDLYVVVHVRSHEFFEREGDHIICEMPLTFAQMALGAEVEVPTVHGKVKL 297

Query:   377 QVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
             ++P GTQ G    L  KGAP +     +GD    V+V +P ++
Sbjct:   298 KIPAGTQTGTEFRLKGKGAPNVRGYG-QGDQYVVVRVVVPTKL 339

GO:0009408 "response to heat" evidence=ISS

TIGR_CMR|GSU_0034 GSU_0034 "chaperone protein dnaJ" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 145/347 (41%), Positives = 192/347 (55%)

Query:    78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG-ATEKFKEISAAYEVLSDDKKRA 136
             DYY  LGV K+AS  EIK A+RKLA QYHPD N +   A EKFKEI+ AYEVLSD +KRA
Sbjct:     7 DYYEVLGVHKNASDTEIKKAFRKLAIQYHPDKNPDDKEAEEKFKEITEAYEVLSDPQKRA 66

Query:   137 MYDQYGEAGVKST--VGGGSSAYTTN-PF-DLFETXXXXXXXXXXXXNQTGFRTRRRSTV 192
              YDQ+G AGV +    GGG   +    PF D+F                 G R RR    
Sbjct:    67 QYDQFGHAGVGAGGFSGGGFGGFGAGTPFGDIF----GDIFGDIFGGRPRGSRGRR---- 118

Query:   193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252
               G+DL+Y++ L F E+ FGAEKE ++ + + C  C G+GAK G++ ++C TC G GQV 
Sbjct:   119 --GDDLQYNMELSFEEAAFGAEKEIQVPYGKRCGDCGGSGAKPGTEPKVCPTCRGAGQV- 175

Query:   253 RTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312
             R  Q   G FS    C  C GEG V+   C  C G G IR  K + VKVP GV TG+ L+
Sbjct:   176 RFQQ---GFFSVSKTCNHCNGEGRVVENPCTSCRGSGMIRDTKTLSVKVPAGVETGTRLK 232

Query:   313 VVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG 372
             +              DLYV + V E P   R+  D+   I +S++ A +G  ++V T++G
Sbjct:   233 LSGEGGQGIKGGGNGDLYVAIAVREHPIFTREDNDVLCEIPVSFVQAALGCEIEVPTLDG 292

Query:   373 ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
                +++P GTQ G +  L  KG P+L     RGD L  +KV  P+ +
Sbjct:   293 KVSMKIPEGTQSGRIFRLRGKGVPQLQGYG-RGDQLVIIKVETPSNL 338

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|P95830 dnaJ "Chaperone protein DnaJ" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 132/342 (38%), Positives = 179/342 (52%)

Query:    78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
             ++Y  LGV K+AS  EIK AYRKL+++YHPD+NKEPGA +K+KE+  AYE LSDD+KRA 
Sbjct:     5 EFYDRLGVSKNASADEIKKAYRKLSKKYHPDINKEPGAEDKYKEVQEAYETLSDDQKRAA 64

Query:   138 YDQYGEAGVKSTVGG--GSSAYT-TNPFDLFETXXXXXXXXXXXXNQTGFRTRRRSTVTK 194
             YDQYG AG     GG  G   +     F  FE                G  +R  +   +
Sbjct:    65 YDQYGAAGANGGFGGAGGFGGFNGAGGFGGFEDIFSSFFGG-------GGSSRNPNAPRQ 117

Query:   195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
             G+DL+Y + L F E+IFG EKE +      C  C G+GAK G+    C  C G G +   
Sbjct:   118 GDDLQYRVNLTFEEAIFGTEKEVKYHREAGCRTCNGSGAKPGTSPVTCGRCHGAGVINVD 177

Query:   255 DQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314
              QTP G+  +   C  C G G+ I   C  C G G  +   ++ VK+P GV TG  +R+ 
Sbjct:   178 TQTPLGMMRRQVTCDVCHGRGKEIKYPCTTCHGTGHEKQAHSVHVKIPAGVETGQQIRLA 237

Query:   315 XXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS 374
                          DLYV + VE     +R+G  +F  ++++++ A +G  V + TV G  
Sbjct:   238 GQGEAGFNGGPYGDLYVVVSVEASDKFEREGTTIFYNLNLNFVQAALGDTVDIPTVHGDV 297

Query:   375 ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP 416
             EL +P GTQ G    L  KGAP L   ++ GD   TV V  P
Sbjct:   298 ELVIPEGTQTGKKFRLRSKGAPSLRGGAV-GDQYVTVNVVTP 338

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|DET_1398 DET_1398 "co-chaperone protein DnaJ" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 125/342 (36%), Positives = 188/342 (54%)

Query:    78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
             DYY  LG+ +SAS ++IK A+RK+A ++HPD N E GA EKFKEI+ AYEVLS+ +KRA 
Sbjct:     6 DYYEVLGIERSASDEDIKKAFRKMAMKHHPDRNHEDGAAEKFKEINEAYEVLSNPEKRAA 65

Query:   138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETXXXXXXXXXXXXNQTGFRTRRRSTVTKGED 197
             YD++G          GS A+    F+ F+               T  ++ +R    +G D
Sbjct:    66 YDRFG-------FSAGSDAFGQGGFENFDFGGLGSIFETFFGGAT--QSAKRGP-RRGPD 115

Query:   198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQT 257
             + YDI +   E+  G EKE     LE C  C+GTGAK G+ +  C+ C G GQV +  ++
Sbjct:   116 MSYDIRITLEEAATGVEKEITTERLEYCSECSGTGAKAGTSLVKCTNCNGTGQVYQVQKS 175

Query:   258 PFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVXXX 317
              FG F+ V+ CP C GEG +I E C KC G G+  +K+ ++VK+P GV+ G+ +R+    
Sbjct:   176 VFGRFTSVTPCPKCRGEGTIIGEPCAKCRGTGKEYVKRTVQVKIPAGVADGNQIRLNGYG 235

Query:   318 XXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQ 377
                       D+Y+ + +      +RDG D+   + I++  A +GT V V  +    +L+
Sbjct:   236 GVGDKGASAGDVYINVSIASHADFKRDGDDVIYELEINFAQAALGTEVNVPGLSTSHKLK 295

Query:   378 VPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
             +P G+Q G   VL  KG P LN+    GD +  + V  P ++
Sbjct:   296 IPSGSQNGKYFVLKGKGIPHLNRFG-SGDEMVHLNVVTPEKL 336

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|P08622 dnaJ [Escherichia coli K-12 (taxid:83333)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 130/344 (37%), Positives = 187/344 (54%)

Query:    75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
             A  DYY  LGV K+A  +EI+ AY++LA +YHPD N+ +  A  KFKEI  AYEVL+D +
Sbjct:     2 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 61

Query:   134 KRAMYDQYGEAGVKST-VGGGSSAYTTNPFDLFETXXXXXXXXXXXXNQTGFRTRRRSTV 192
             KRA YDQYG A  +   +GGG      +  D+F                 G R R+R+  
Sbjct:    62 KRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFG--------GGRGRQRAA- 112

Query:   193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252
              +G DLRY++ L   E++ G  KE  +  LE C+VC G+GAK G++ + C TC G GQV 
Sbjct:   113 -RGADLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQV- 170

Query:   253 RTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312
                Q   G F+    CP C G G +I + C KC G GR+   K + VK+P GV TG  +R
Sbjct:   171 ---QMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPAGVDTGDRIR 227

Query:   313 VVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG 372
             +              DLYV + V++ P  +R+G +L+  + I++  A +G  ++V T++G
Sbjct:   228 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG 287

Query:   373 ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP 416
               +L+VP  TQ G +  +  KG   + +   +GD L  V V  P
Sbjct:   288 RVKLKVPGETQTGKLFRMRGKGVKSV-RGGAQGDLLCRVVVETP 330

GO:0003756 "protein disulfide isomerase activity" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA;IMP

GO:0006457 "protein folding" evidence=IDA

GO:0042026 "protein refolding" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=IEA;IDA

GO:0016020 "membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006260 "DNA replication" evidence=IEA;IMP

GO:0009408 "response to heat" evidence=IEA;IEP

GO:0046872 "metal ion binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043335 "protein unfolding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B0JW23	DNAJ_MICAN	No assigned EC number	0.5333	0.7618	0.9491	yes	no
B1WVR2	DNAJ_CYAA5	No assigned EC number	0.5346	0.7553	0.9361	yes	no
Q2JH49	DNAJ_SYNJB	No assigned EC number	0.5161	0.7381	0.8730	yes	no
Q7VEJ6	DNAJ_PROMA	No assigned EC number	0.5112	0.7489	0.9232	yes	no
B7KEJ8	DNAJ_CYAP7	No assigned EC number	0.5598	0.7575	0.9413	yes	no
Q7NDG8	DNAJ_GLOVI	No assigned EC number	0.5251	0.7660	0.9321	yes	no
B7JY68	DNAJ_CYAP8	No assigned EC number	0.5277	0.7596	0.944	yes	no
B0CAZ0	DNAJ_ACAM1	No assigned EC number	0.5431	0.7510	0.9358	yes	no
Q2JW78	DNAJ_SYNJA	No assigned EC number	0.5295	0.7381	0.8730	yes	no
Q8DKR7	DNAJ_THEEB	No assigned EC number	0.5509	0.7403	0.9249	yes	no
Q7V9C8	DNAJ_PROMM	No assigned EC number	0.5069	0.7660	0.9444	yes	no
Q8YUA5	DNAJ_NOSS1	No assigned EC number	0.5150	0.7682	0.9521	yes	no
Q114R3	DNAJ_TRIEI	No assigned EC number	0.5192	0.7618	0.9491	yes	no
B8HLD2	DNAJ_CYAP4	No assigned EC number	0.5391	0.7532	0.9385	yes	no
B1XQF6	DNAJ_SYNP2	No assigned EC number	0.5273	0.7768	0.9576	yes	no
Q5N0G1	DNAJ_SYNP6	No assigned EC number	0.5094	0.7424	0.9202	yes	no
B2J3J3	DNAJ_NOSP7	No assigned EC number	0.5095	0.7660	0.952	yes	no
Q3MG81	DNAJ_ANAVT	No assigned EC number	0.5150	0.7682	0.9521	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	466
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	1e-178
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	1e-175
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-147
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	1e-132
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-118
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	1e-111
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	1e-110
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	1e-109
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	1e-107
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	1e-106
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	1e-105
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	1e-103
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	1e-102
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	1e-101
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	1e-100
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	3e-98
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	3e-94
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	5e-94
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	7e-92
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	2e-91
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	3e-91
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	5e-86
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	3e-85
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	4e-83
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	1e-77
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	4e-76
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	3e-64
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	3e-54
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	7e-52
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	1e-50
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	3e-50
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	2e-40
pfam00226	63	pfam00226, DnaJ, DnaJ domain	9e-33
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	3e-26
cd10719	65	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and H	5e-26
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	6e-26
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	1e-23
pfam01556	81	pfam01556, DnaJ_C, DnaJ C terminal domain	3e-23
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	7e-21
pfam00684	65	pfam00684, DnaJ_CXXCXGXG, DnaJ central domain	5e-20
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	1e-11
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	2e-11
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	2e-10
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	2e-10
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	2e-06
pfam01556	81	pfam01556, DnaJ_C, DnaJ C terminal domain	8e-06
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	4e-05
TIGR00714	155	TIGR00714, hscB, Fe-S protein assembly co-chaperon	6e-05
PHA03102	153	PHA03102, PHA03102, Small T antigen; Reviewed	3e-04
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	6e-04
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	0.001
PHA02624	647	PHA02624, PHA02624, large T antigen; Provisional	0.001
COG1107	715	COG1107, COG1107, Archaea-specific RecJ-like exonu	0.004

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score =  502 bits (1295), Expect = e-178
 Identities = 202/358 (56%), Positives = 246/358 (68%), Gaps = 5/358 (1%)

Query: 77  GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRA 136
            DYY  LGV + A   E+K AYR+LAR+YHPDVNKEPGA ++FKEI+ AYEVLSD + RA
Sbjct: 3   ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA 62

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGE 196
            YDQ+GEAGV    G           D+FETFF     GF G    G R RRR    +G+
Sbjct: 63  RYDQFGEAGVSGAAGFPDMGDMGGFADIFETFFS----GFGGAGGQGGRRRRRGP-QRGD 117

Query: 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ 256
           DLRYD+ L+F E+IFG EKE  + HLETCE C G+GAK G+    CSTCGG GQV R  +
Sbjct: 118 DLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATR 177

Query: 257 TPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGE 316
           TPFG F+QVS CP+C G G+VI + C  C G+G  ++ K +K+ +P GV TG+ LRV GE
Sbjct: 178 TPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGE 237

Query: 317 GDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISEL 376
           GDAG RGGPPGDLYVYL V+  P  +RDGI++ S I ISYL AI+G  ++V TV+G  EL
Sbjct: 238 GDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVEL 297

Query: 377 QVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434
            +P GTQP  VL L  KG P+L  P  RGDHL TVKV IP RIS +ERELLE+LA ++
Sbjct: 298 TIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKLAKIK 355

Length = 374

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score =  495 bits (1278), Expect = e-175
 Identities = 183/360 (50%), Positives = 228/360 (63%), Gaps = 9/360 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV K AS +EIK AYRKLA++YHPD NK+  A EKFKEI+ AYEVLSD +KRA 
Sbjct: 1   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQ 60

Query: 138 YDQYGEAGVKSTVGGGSSAY---TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTK 194
           YDQ+G AG     GGG   +       F  F   FG   GG  G        RRRS   +
Sbjct: 61  YDQFGHAGFNGGGGGGGGGFNGFDIGFFGDFGDIFGDFFGGGGG-----SGRRRRSGPRR 115

Query: 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
           GEDLRYD+ L F E++FG EKE E+   E+CE C GTGAK G+  + C TCGG GQV R 
Sbjct: 116 GEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQ 175

Query: 255 DQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314
             TPFG F Q   CP+CGGEG++I E C  C G+GR++ +K I VK+P GV TG  LRV 
Sbjct: 176 QGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVS 235

Query: 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS 374
           G+G+AG  GGP GDLYV + V+     +RDG DL+  + IS+  AI+G  ++V T++G  
Sbjct: 236 GKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDV 295

Query: 375 ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434
           +L++P GTQ G V  L  KG P+L     RGD L TVKV  P  +S +++ELLEELA   
Sbjct: 296 KLKIPAGTQSGTVFRLKGKGVPRLRGNG-RGDLLVTVKVETPKNLSKEQKELLEELAEAS 354

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score =  425 bits (1095), Expect = e-147
 Identities = 165/361 (45%), Positives = 223/361 (61%), Gaps = 16/361 (4%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LGV K AS +EIK AYRKLA++YHPD N  +  A EKFKEI+ AYEVLSD +KRA
Sbjct: 5   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64

Query: 137 MYDQYGEAGVKSTVGGGS--SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTK 194
            YDQ+G AG K+   GG     +  +  D+FE FFG   GG       G   RR +   +
Sbjct: 65  AYDQFGHAGFKAGGFGGFGFGGFGGDFGDIFEDFFG---GG-------GGGRRRPNRPRR 114

Query: 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
           G DLRY++ +   E++FG +KE  ++   TC  C G+GAK G+  + C TC G GQV   
Sbjct: 115 GADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTV 174

Query: 255 DQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314
            +T F  FS    CP+C G G++I + C KC G+GR++ KK+I V +P GV  G  +R+ 
Sbjct: 175 QRTGF--FSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLS 232

Query: 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS 374
           GEG+AGP GGP GDLYV++ V+  P  +RDG DL+  + IS+ +A +G  ++V T++G  
Sbjct: 233 GEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRV 292

Query: 375 ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434
           +L++P GTQ G+V  L  KG PKL     RGD    VKV  P  +S +++ELLEE A   
Sbjct: 293 KLKIPAGTQTGEVFRLRGKGMPKLRS-GGRGDLYVRVKVETPKNLSDEQKELLEEFAKSL 351

Query: 435 N 435
            
Sbjct: 352 G 352

Length = 371

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score =  386 bits (995), Expect = e-132
 Identities = 158/372 (42%), Positives = 215/372 (57%), Gaps = 17/372 (4%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LGV ++AS  EIK AYRKLA +YHPD N  +  A EKFKEI  AYEVLSD +KRA
Sbjct: 5   DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRA 64

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGE 196
            YDQYG A  +   GGG         D+F   FG   GG  G          R    +G 
Sbjct: 65  AYDQYGHAAFEQGGGGGGFGGGGGFGDIFGDIFGDIFGGGRG--------GGRQRARRGA 116

Query: 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ 256
           DLRY++ +   E++ G  KE  +  L TC+ C G+GAK G+  + C TC G GQV R  Q
Sbjct: 117 DLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQV-RMQQ 175

Query: 257 TPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGE 316
              G F+    CP+C G G++I + C+KC G+GR+  +K + VK+P GV TG  +R+ GE
Sbjct: 176 ---GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGE 232

Query: 317 GDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISEL 376
           G+AG RGGP GDLYV + V+E P  +RDG DL+  + IS+  A +G  ++V T++G  +L
Sbjct: 233 GEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKL 292

Query: 377 QVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRNT 436
           ++P GTQ G +  L  KG   +     RGD    V V  P  ++ +++ELLEE      +
Sbjct: 293 KIPEGTQTGKLFRLRGKGVKSVRS-GARGDLYCQVVVETPVNLTKRQKELLEEFE---ES 348

Query: 437 TGSRTRTRPKTQ 448
             S  +  PK++
Sbjct: 349 FESGEKHSPKSK 360

Length = 371

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score =  350 bits (899), Expect = e-118
 Identities = 176/376 (46%), Positives = 229/376 (60%), Gaps = 23/376 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG---ATEKFKEISAAYEVLSDDKK 134
           DYY  LGV + AS +EIK +YRKLA +YHPD N  PG   A E FKE + AYEVLSD KK
Sbjct: 5   DYYEILGVTRDASEEEIKKSYRKLAMKYHPDRN--PGDKEAEELFKEAAEAYEVLSDPKK 62

Query: 135 RAMYDQYGEAGVKSTVGGGSSAYTT--NPF-DLFETFFGPSMGGFPGMNQTGFRTRRRST 191
           R +YDQYG  G+  T   G S +    + F D+FE FFG   G          R R R+ 
Sbjct: 63  RGIYDQYGHEGLSGTGFSGFSGFDDIFSSFGDIFEDFFGFGGGR---------RGRSRTA 113

Query: 192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQV 251
           V  G DLRYD+ L F E+ FG EKE  +  LETCE C G+G + G+    C  CGG GQV
Sbjct: 114 VRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQV 173

Query: 252 MRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311
            ++     G FS  + CP C G G+VI   C+ C G+GR+R+ K ++VK+P GV TGS L
Sbjct: 174 TQSQ----GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRL 229

Query: 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVE 371
           R+ GEG+AG RGGPPGDLYV+L VE     +RDG D+   + IS++ A +G  ++V T+E
Sbjct: 230 RLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLE 289

Query: 372 GISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELA 431
           G  EL++P GTQPGD+     KG P L +   RGD +  V+V +P R++ K+ ELL E A
Sbjct: 290 GERELKIPKGTQPGDIFRFKGKGIPSL-RGGGRGDQIIEVEVKVPTRLTKKQEELLTEFA 348

Query: 432 SLRN-TTGSRTRTRPK 446
            L +   G++ R   K
Sbjct: 349 RLESEKIGNKLRNLFK 364

Length = 366

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score =  333 bits (856), Expect = e-111
 Identities = 162/363 (44%), Positives = 212/363 (58%), Gaps = 21/363 (5%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV KSAS  EIK AYRKL+++YHPD+NKE GA EKFKEIS AYEVLSDD+KRA 
Sbjct: 5   DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQ 64

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPF-------DLFETFFGPSMGGFPGMNQTGFRTRRRS 190
           YDQ+G AG     GGG   +    F       D+F +FFG            G R R  +
Sbjct: 65  YDQFGHAGPNQGFGGG--GFGGGDFGGGFGFEDIFSSFFG-----------GGGRRRDPN 111

Query: 191 TVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQ 250
              +G DL+Y + L F E++FG EKE E+   ETC+ C G+GAK G+    CS CGG GQ
Sbjct: 112 APRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQ 171

Query: 251 VMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310
           V     TPFG       CP C G G+ I E C  C G+G++R +K I VK+P GV  G  
Sbjct: 172 VSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQ 231

Query: 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTV 370
           +RV GEG+ G  GGP GDLYV   V      +RDG D++  + +++  A +G  ++V T+
Sbjct: 232 IRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTL 291

Query: 371 EGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEEL 430
            G  +L++P GTQ G    L  KG P +     +GD    V+V  P +++ +++ELL E 
Sbjct: 292 HGKVKLKIPAGTQTGTQFRLKGKGVPNVRGYG-QGDQYVVVRVVTPTKLTDRQKELLREF 350

Query: 431 ASL 433
           A L
Sbjct: 351 AEL 353

Length = 376

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score =  330 bits (847), Expect = e-110
 Identities = 156/383 (40%), Positives = 220/383 (57%), Gaps = 32/383 (8%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG---ATEKFKEISAAYEVLSDDKK 134
           DYY  LGV ++A+ +EIK AYR+LA++YHPD+N  PG   A +KFKEI+ AYE+LSD +K
Sbjct: 6   DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLN--PGDKEAEQKFKEINEAYEILSDPQK 63

Query: 135 RAMYDQYGEA----GVKSTVGGGSSAYTTNPFD--------LFETFFGPSMGGFPGMNQT 182
           RA YDQ+G A    G     G G   +    FD        +FE  FG            
Sbjct: 64  RAQYDQFGHAAFDPGGFGQGGFGQGGFGGGGFDFDFGGFGDIFEDIFG-----------D 112

Query: 183 GFRTRRRSTVT---KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKM 239
            F T RR   T   KG D+RYD+ L F E+ FG EKE E+   E C+VC G+GAK GSK 
Sbjct: 113 FFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKP 172

Query: 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKV 299
             C  C G GQV     TPFG    +  C  C GEG++I++ C KC G GRIR ++ IKV
Sbjct: 173 VTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKV 232

Query: 300 KVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDA 359
            +P G+  G ++ + GEG+ G +GGP GDLY+ + V+  P  +R+G +++  + I++ DA
Sbjct: 233 NIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDA 292

Query: 360 IMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
            +G  +++ T++G  +  +P GTQ G    L  KG P L     RGD +  V + +P ++
Sbjct: 293 ALGGEIEIPTLDGKVKFTIPEGTQTGTKFRLRGKGIPHLRG-RGRGDQIVKVYIEVPKKL 351

Query: 420 SAKERELLEELASLRNTTGSRTR 442
           + K++ELL E   L    G+ +R
Sbjct: 352 TEKQKELLREFEKLSGEEGTESR 374

Length = 386

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score =  327 bits (840), Expect = e-109
 Identities = 153/358 (42%), Positives = 203/358 (56%), Gaps = 12/358 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           +YY  LGV K AS  EIK AYRKL+++YHPD+NKEPGA EK+KE+  AYE LSD +KRA 
Sbjct: 5   EYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAA 64

Query: 138 YDQYGEAGVKSTVGGGSSAY----TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVT 193
           YDQYG AG     GGG+  +     +  F  FE  F    GG       G   R  +   
Sbjct: 65  YDQYGAAGANGGFGGGAGGFGGFDGSGGFGGFEDIFSSFFGG-------GGARRNPNAPR 117

Query: 194 KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMR 253
           +G+DL+Y + L+F E+IFG EKE   +   TC  C G+GAK G+    C  C G G +  
Sbjct: 118 QGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITV 177

Query: 254 TDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313
             QTP G+  +   C  C G G+ I E C+ C G G  +    + VK+P GV TG  +R+
Sbjct: 178 DTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRL 237

Query: 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI 373
            G+G+AG  GGP GDLYV   VE     +RDG  ++ T+ IS++ A +G  V+V TV G 
Sbjct: 238 QGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGD 297

Query: 374 SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELA 431
            EL++P GTQ G    L  KGAPKL      GD   TV +  P +++  ++E L+  A
Sbjct: 298 VELKIPAGTQTGKKFRLRGKGAPKLRGGGN-GDQHVTVNIVTPTKLNDAQKEALKAFA 354

Length = 380

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score =  323 bits (829), Expect = e-107
 Identities = 157/357 (43%), Positives = 214/357 (59%), Gaps = 7/357 (1%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV ++A  KEIK AYRKLAR+YHPDV++E GA EKFKEIS AY VLSDD+KR  
Sbjct: 6   DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQR 65

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGM-NQTGFRTRRRSTVTKGE 196
           YDQ+G AG+     G S     N  + FE  F     G   + +  GF    R    +G 
Sbjct: 66  YDQFGHAGMD----GFSQEDIFNNIN-FEDIFQGFGFGIGNIFDMFGFGGGSRHGPQRGA 120

Query: 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ 256
           D+  ++ +   E+  G EK+ ++ H + C VC G+ A+ GS+++ C TCGG GQV +   
Sbjct: 121 DIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRN 180

Query: 257 TPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGE 316
           T  G    V+ CP C GEG+++ + C  C G+G +R  K I VK+P GV TGS LRV GE
Sbjct: 181 TILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGE 240

Query: 317 GDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISEL 376
           G+ G RGG PGDLYV + V+     +R+G +L+    IS++ A +G  V V T++G  EL
Sbjct: 241 GEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVEL 300

Query: 377 QVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 433
           ++P GTQ G    L   G P L   S +G+    VKV +P ++S K++ELL E AS+
Sbjct: 301 KIPAGTQSGTTFRLKGHGMPSLRW-SGKGNLYVKVKVVVPKKLSPKQKELLREFASI 356

Length = 378

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score =  319 bits (818), Expect = e-106
 Identities = 161/361 (44%), Positives = 217/361 (60%), Gaps = 18/361 (4%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
           AS DYY  LG+ K AS  EIK A+RKLA +YHPD NK    A EKFKEI+ AY+VLSD +
Sbjct: 2   ASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQ 61

Query: 134 KRAMYDQYGEAGVKSTVGGGSSAYTTNPF-------DLFETFFGPSMGGFPGMNQTGFRT 186
           K+A YDQ+G A      G GS  +    F       D+F++FFG   GGF      G  +
Sbjct: 62  KKAQYDQFGTADFNGAGGFGSGGFGGFDFSDMGGFGDIFDSFFG---GGF------GSSS 112

Query: 187 RRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCG 246
           RRR+   +G D+ Y I L F E++FG EKE  ++  E CE C GTGAK G+  + C  CG
Sbjct: 113 RRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCG 172

Query: 247 GRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVS 306
           G GQ+     TP G F   + C  CGG G+VI + C KC G+G++R  + IKV VP GV 
Sbjct: 173 GTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVD 232

Query: 307 TGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVK 366
           TG+++ + G+G+ G  GGP GDLY+ + V      +R G D++    IS+  A +GT +K
Sbjct: 233 TGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIK 292

Query: 367 VKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKEREL 426
           V TV+G  + +VP GTQPG V  L  KG P++N    RG+   TV V IP ++++K++E 
Sbjct: 293 VPTVDGEVKYEVPAGTQPGTVFRLKGKGVPRVNSTG-RGNQYVTVIVDIPKKLNSKQKEA 351

Query: 427 L 427
           L
Sbjct: 352 L 352

Length = 380

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score =  317 bits (813), Expect = e-105
 Identities = 155/374 (41%), Positives = 211/374 (56%), Gaps = 25/374 (6%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDD 132
              DYY  LGV ++A+ +EIK AY++L +++HPD + E    A +KFKEI  AYEVLSD 
Sbjct: 2   EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDP 61

Query: 133 KKRAMYDQYG---EAGVKSTVGGGSSAYT------TNPF--DLFETFFGPSMGGFPGMNQ 181
           +KRAMYD++G   E         G   +        N F  D+F+ FFG          +
Sbjct: 62  QKRAMYDRFGYVGEQPPYQETESGGGFFEDIFKDFENIFNRDIFDIFFG----------E 111

Query: 182 TGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRI 241
              +  +R    +GED+RY+I +  S+ I GAE   E    ETC  C GTG + GS    
Sbjct: 112 RRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVT 171

Query: 242 CSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKV 301
           C  C G G++    ++ FG+F     C  CGG G++  EYC +C G GRIR +    VK+
Sbjct: 172 CPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKI 231

Query: 302 PPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIM 361
           P GV  G++LR+ G G+AG  GGP GDLYV + V   P  +R G DL   ++I YL AI+
Sbjct: 232 PAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAIL 291

Query: 362 GTVVKVKTVEG-ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIS 420
           GT V+V   EG  + L++PPGTQP  V  L  KG P + +   RGD +  V V IP R+S
Sbjct: 292 GTTVEVPLPEGGTTMLKIPPGTQPETVFRLKGKGLPNM-RYGRRGDLIVNVHVEIPKRLS 350

Query: 421 AKERELLEELASLR 434
            +ER+LL+ELA  R
Sbjct: 351 REERKLLKELAKKR 364

Length = 369

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score =  313 bits (803), Expect = e-103
 Identities = 156/362 (43%), Positives = 207/362 (57%), Gaps = 18/362 (4%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LG+ K AS ++IK AYRKLA +YHPD NKEP A EKFKEIS AY VLSD +KRA 
Sbjct: 6   DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQ 65

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPF----DLFETFFGPSMGGFPGMNQTGFRTRRRSTVT 193
           YD++G AG+ +        +    F    D+FE FFG            G   R R    
Sbjct: 66  YDRFGHAGIDNQYSA-EDIFRGADFGGFGDIFEMFFG------------GGGRRGRMGPR 112

Query: 194 KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMR 253
           +G DLRYD+ +   E+ FG  K+ ++   E C  C+GTGAK G+  + C TCGG GQV  
Sbjct: 113 RGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTT 172

Query: 254 TDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313
           T  TP G F   + C +C G G+VI   C  CSG G++R  + I V VP G  +G  L++
Sbjct: 173 TRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKL 232

Query: 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI 373
            GEG+AG  G P GDLY+ L V+E    +R G D+ S I IS+  A +G  + V T+ G 
Sbjct: 233 SGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGK 292

Query: 374 SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 433
            ++ +PPGTQ   V  L  KG P+L+    +GD L  V V  P +++ +++ELL E   L
Sbjct: 293 VKMNIPPGTQTHSVFRLKDKGMPRLHG-HGKGDQLVKVIVKTPTKLTQEQKELLREFDEL 351

Query: 434 RN 435
            N
Sbjct: 352 SN 353

Length = 377

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score =  310 bits (796), Expect = e-102
 Identities = 152/361 (42%), Positives = 201/361 (55%), Gaps = 17/361 (4%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV ++AS  EIK AYRKLAR+ HPDVN +  A EKFKEIS AYEVLSD +KR +
Sbjct: 4   DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRI 63

Query: 138 YDQYG---EAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTK 194
            D  G   E+      GGG         D+FE FFG            G R R    V  
Sbjct: 64  VDLGGDPLESAGGG--GGGFGGGFGGLGDVFEAFFGGGAA------SRGPRGR----VRP 111

Query: 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
           G D    + L+  E   G  K+  +     C+ C G G    SK   C TCGGRG+V   
Sbjct: 112 GSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTV 171

Query: 255 DQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314
            ++  G       CP+C G GEVI + C +C+G+GR+R ++ I VK+P GV  G  +R+ 
Sbjct: 172 QRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLA 231

Query: 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTV-EGI 373
            +G+ GP GGP GDLYV +  +      RDG DL  T+S+  +DA +GT V V+ + +G 
Sbjct: 232 AQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGP 291

Query: 374 SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 433
           SE+ +PPGTQPG V+ L  +G P L +   RGD    V+V +P R+  ++ ELL EL +L
Sbjct: 292 SEITIPPGTQPGSVITLRGRGMPHL-RSGGRGDLHAHVEVVVPTRLDHEDIELLRELKAL 350

Query: 434 R 434
           R
Sbjct: 351 R 351

Length = 378

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score =  306 bits (785), Expect = e-101
 Identities = 149/375 (39%), Positives = 215/375 (57%), Gaps = 27/375 (7%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV ++A+ +EIK AYR+LAR+YHPD NK P A EKFKEI+ AY+VLSD +KR +
Sbjct: 4   DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKL 63

Query: 138 YDQYGEAGVKS--TVGGGSSAYTTNPF----DLFETF---FGPSMGGFPGMNQTGFRTRR 188
           YDQ+G A          G   ++        D+ E     FG     F     T  R + 
Sbjct: 64  YDQFGHAAFSGSGQQQQGQEGFSDFGGGNIEDILEDVFDIFGFG-DIFGRRRATRERRKT 122

Query: 189 RSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGR 248
                KGED+   + +   E+  G     E+     CE C GTG   GS  ++C TCGG 
Sbjct: 123 YQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGS 182

Query: 249 GQVMRTDQTPFGLFSQVS-VCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307
           G++ +      G F ++S  CP+CGGEG V+ E C KC+G G +  K+ IKV++PPGV  
Sbjct: 183 GEIYQR-----GGFFRISQTCPTCGGEG-VLREPCSKCNGRGLVIKKETIKVRIPPGVDN 236

Query: 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           GS LRV G+G AG  GGPPGDLY+ + V+  P  +R G +L+  ++I+  +A++GT ++V
Sbjct: 237 GSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEV 296

Query: 368 KTVEGISE-LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP--NRISA--- 421
             ++G  E +++PPGT+ GD + +  KG P+L K S  GD +  V + +P  + +S    
Sbjct: 297 PLLDGKKEKVKIPPGTKEGDKIRVPGKGMPRL-KGSGYGDLVVRVHIDVPKISMLSKLMG 355

Query: 422 ---KERELLEELASL 433
              K ++LL+EL  L
Sbjct: 356 DGKKAKKLLKELDKL 370

Length = 382

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score =  304 bits (781), Expect = e-100
 Identities = 154/361 (42%), Positives = 202/361 (55%), Gaps = 20/361 (5%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVN-KEPGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LGV + AS  EIK AYRKLA QYHPD N   P A +KFKE + AYEVL D +KRA
Sbjct: 5   DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRA 64

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPF----DLFETFFGPSMGGFPGMNQTGFRTRRRSTV 192
            YD++G AGV    G G  +   + F    D+F   FG S GG          +RR    
Sbjct: 65  RYDRFGHAGVNGNGGFGGFSSAEDIFSHFSDIFGDLFGFSGGG----------SRRGPRP 114

Query: 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252
             G DLRY++ + F ++  G E    +    TC+ C G+GA  G+    C  CGG GQV 
Sbjct: 115 QAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVR 174

Query: 253 RTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312
           ++     G F     CP C GEG VI+  C KC G G ++  + +KV++P GV TGS LR
Sbjct: 175 QSQ----GFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLR 230

Query: 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG 372
           + GEG+ G  GGPPGDLYV + VE+    QR G DL  T  IS++ A +G  ++V T++ 
Sbjct: 231 LRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDD 290

Query: 373 ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELAS 432
              L +P GTQ G+V  L  KG P L   S +GD L  V V  P +++ ++ ELL E  +
Sbjct: 291 PVTLDIPKGTQSGEVFRLRGKGLPYLGS-SQKGDLLVEVSVVTPTKLTKRQEELLREFEA 349

Query: 433 L 433
           L
Sbjct: 350 L 350

Length = 373

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score =  300 bits (770), Expect = 3e-98
 Identities = 155/373 (41%), Positives = 205/373 (54%), Gaps = 27/373 (7%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG---ATEKFKEISAAYEVLSDDKK 134
           DYY  LGV +SA   EIK AYRKLA +YHPD  K P    A E FKE++ AYEVLS+D K
Sbjct: 4   DYYEVLGVSRSADKDEIKKAYRKLALKYHPD--KNPDNKEAEEHFKEVNEAYEVLSNDDK 61

Query: 135 RAMYDQYGEAGVKSTVG-GGSSAYTTNPFDL------FETFFGPSMGGFPGMNQTGF--- 184
           R  YDQ+G AGV S+   GG   Y     D       F   FG       G +  GF   
Sbjct: 62  RRRYDQFGHAGVGSSAASGGGPGYGGGGGDFNDIFSAFNDMFGGG-ARRGGGSPFGFEDV 120

Query: 185 -----RTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKM 239
                R RR S    G DL+  + L   E   G EK  ++     C+ C GTG+K G   
Sbjct: 121 FGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTG-AT 179

Query: 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKV 299
             C TC G G+V +  +T FG F  ++ CP+CGGEG V+ + C  C GEG  + +  +KV
Sbjct: 180 ETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKV 239

Query: 300 KVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPG--IQRDGIDLFSTISISYL 357
            VP GV  G+ L + G+G+AGPRGG PGDL V   +EE P     R+G D+   +++SY 
Sbjct: 240 TVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVV--IEEKPHELFVRNGDDVIYNLAVSYP 297

Query: 358 DAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPN 417
           D ++GT V+V T++G  +L +P GTQP  +L +  KG   L     RGD    V V +P 
Sbjct: 298 DLVLGTKVEVPTLDGAVKLTIPAGTQPETMLRIPGKGIGHLRGSG-RGDQYVRVNVFVPK 356

Query: 418 RISAKERELLEEL 430
            +S +++ELL+EL
Sbjct: 357 EVSHQDKELLKEL 369

Length = 397

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score =  289 bits (740), Expect = 3e-94
 Identities = 150/356 (42%), Positives = 208/356 (58%), Gaps = 12/356 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV ++AS  E+K AYRKLAR+YHPDVNK P A +KFKE+  AY+ LSD +K+A 
Sbjct: 5   DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAH 64

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGED 197
           YDQ+G        GGG +       D+F+ FFG   G            R  +   +G D
Sbjct: 65  YDQFGHTDPNQGFGGGGAGDFGGFSDIFDMFFGGGGG-----------RRNPNAPRQGAD 113

Query: 198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQT 257
           L+Y + LEF E++FG E E E+   ETC  C G+GAK G+K   CS CGG GQ+     T
Sbjct: 114 LQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNT 173

Query: 258 PFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG 317
           PFG      VC  C G G++I + C  C G+G++R +K I VKVP G+  G  LRV G+G
Sbjct: 174 PFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQG 233

Query: 318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQ 377
           +AG  GGPPGDLYV  +V+     +RDG D++  + +++    +G  ++V T+ G  +L+
Sbjct: 234 EAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLK 293

Query: 378 VPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 433
           +P GTQ G    L  KG P ++    +GD    V+V  P  ++ KE+EL+ E A +
Sbjct: 294 IPAGTQTGTSFRLRGKGVPNVHGRG-QGDQHVQVRVVTPKNLTEKEKELMREFAGM 348

Length = 371

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score =  289 bits (741), Expect = 5e-94
 Identities = 151/372 (40%), Positives = 210/372 (56%), Gaps = 23/372 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG---ATEKFKEISAAYEVLSDDKK 134
           DYY  LGV K+AS +EIK AYRKLA +YHPD  K PG   A ++FKE+S AYEVLSD +K
Sbjct: 2   DYYTILGVSKTASPEEIKKAYRKLAVKYHPD--KNPGDAEAEKRFKEVSEAYEVLSDAQK 59

Query: 135 RAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETF---FGPSMGG-------FPGMNQTGF 184
           R  YD+YG+ G  +  GG   A   N  D   TF   FG   GG         G     F
Sbjct: 60  RESYDRYGKDGPFAGAGGFGGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAF 119

Query: 185 RTRRRS-TVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICS 243
             R       +G   +  I L F E+  G EKE  +S  ++C+ C+G+GA     +++C 
Sbjct: 120 GMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCD 179

Query: 244 TCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPP 303
            C G GQV+++     G FS  S CP CGGEG VI++ C  C G+GRI+ K+++ V +P 
Sbjct: 180 RCKGSGQVVQSR----GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPA 235

Query: 304 GVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGT 363
           GV +G  L++ G GDAG  G P GDLYV++DVE  P  +R G DL   + I ++DA +G 
Sbjct: 236 GVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGM 295

Query: 364 VVKVKTV--EGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISA 421
             ++ T+  EG   L +P G Q G +L +  +G P ++    RGD L  + V  P  +S 
Sbjct: 296 KKEIPTLLKEGTCRLTIPEGIQSGTILKVRGQGFPNVHGKG-RGDLLVRISVETPQNLSE 354

Query: 422 KERELLEELASL 433
           +++ELL + A+ 
Sbjct: 355 EQKELLRQFAAT 366

Length = 391

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score =  283 bits (725), Expect = 7e-92
 Identities = 164/375 (43%), Positives = 223/375 (59%), Gaps = 23/375 (6%)

Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAM 137
           YY  LGV KSA+ +EIK+AYRKLA +YHPD NK    + EKFKE + AYE+L D KKR  
Sbjct: 6   YYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQA 65

Query: 138 YDQYGEAGVKSTVGG-GSSAYT--TNPF----DLFETFFGPSMGGFPGMNQTGFRTRRRS 190
           YDQ+G+AGV +  GG G  AYT  ++ F    D+F  FFG   GG       G    RRS
Sbjct: 66  YDQFGKAGVNAGAGGFGQGAYTDFSDIFGDFGDIFGDFFGGGRGG-------GSGGGRRS 118

Query: 191 TVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQ 250
              +G DLRY++ +   ++  G E + E+  LE+C  C G+GA  GS    C  CGG GQ
Sbjct: 119 GPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQ 178

Query: 251 VMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310
           + RT     G FS  + CP+C G+G VIS  C+ C G+G    ++ I +K+PPGV TGS 
Sbjct: 179 IRRTQ----GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSR 234

Query: 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTV 370
           L+V GEG+AGP GGP GDLYV   +++    +R G DL     IS   AI+G  ++V T+
Sbjct: 235 LKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTI 294

Query: 371 EG-ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEE 429
           +G  +++++P GT+ G V  L   G P L     +GD    VK+ IP +I+ ++REL+EE
Sbjct: 295 DGKKAKMKIPEGTESGQVFRLKGHGMPYLGAYG-KGDQHVIVKIEIPKKITRRQRELIEE 353

Query: 430 LA--SLRNTTGSRTR 442
            A  S  N  GS+ +
Sbjct: 354 FARESGENIPGSKGK 368

Length = 372

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score =  282 bits (723), Expect = 2e-91
 Identities = 155/366 (42%), Positives = 208/366 (56%), Gaps = 13/366 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG---ATEKFKEISAAYEVLSDDKK 134
           DYY  LGV K+A+  EIK AYRK A QYHPD  K PG   A EKFKE + AY+VLSD  K
Sbjct: 6   DYYEVLGVSKTATVDEIKKAYRKKAIQYHPD--KNPGDKEAEEKFKEAAEAYDVLSDPDK 63

Query: 135 RAMYDQYGEAGVKSTVGGGS-SAYTTNPFDLFETF---FGPSMGGFPGMNQ-TGFRTRRR 189
           R+ YDQ+G AGV    GGG  S    +  D+F  F   FG   GGF G     G  +++R
Sbjct: 64  RSRYDQFGHAGVGGAAGGGGFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQR 123

Query: 190 STVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRG 249
             V +G DLR  + L   E   G EK+F++     C  C GTGA+  +    C TC G G
Sbjct: 124 --VFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSG 181

Query: 250 QVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGS 309
            V R   T  G     S CP+C GEG++I + C+KC GEG +  ++ I VK+P GV+ G 
Sbjct: 182 SVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGM 241

Query: 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKT 369
            L + G+G+AG  GG  GDL V ++ E  P + RD  DL   + +S   A +G  V+V T
Sbjct: 242 QLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPT 301

Query: 370 VEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEE 429
           ++G +++++  GTQPG VL L  KG P +N     GD L  V V IP  +S +E++ LE+
Sbjct: 302 IDGKAKVKIEAGTQPGKVLRLRNKGLPSVNGYG-TGDLLVNVSVYIPETLSKEEKQTLEK 360

Query: 430 LASLRN 435
           + +  N
Sbjct: 361 MENSDN 366

Length = 386

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score =  281 bits (720), Expect = 3e-91
 Identities = 139/356 (39%), Positives = 196/356 (55%), Gaps = 14/356 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV ++AS  EIK+AYRKLA +YHPD NKE GA EKF +I+ AY VLSD +KRA 
Sbjct: 3   DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAH 62

Query: 138 YDQYGEAGVKSTVGGGS-SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGE 196
           YD++G A      GG        +P D+FE  FG       G    G R RR     +G+
Sbjct: 63  YDRFGTAPGAGMPGGDPFGGMGFDPMDIFEQLFG-------GAGFGGGRGRRGP--ARGD 113

Query: 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMR-ICSTCGGRGQVMRTD 255
           DL  +  +   ++  G E E E+  L  CE C G+  + G K    C TC G G V    
Sbjct: 114 DLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQA 173

Query: 256 QTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVG 315
           +T FG+      CP+C GEG++I++ C  C G GR    + +KVK+P G+  G  +RV G
Sbjct: 174 RTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAG 233

Query: 316 EGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISE 375
            G+ GP G   GDLYV++++E  P ++R+   L     I +  A +G  + V T++G   
Sbjct: 234 MGNEGPGGN--GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQV 291

Query: 376 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELA 431
           ++V PGTQ GD+  L  +G P+L      GD +   ++ +P ++S + RE LE  A
Sbjct: 292 IEVKPGTQHGDLHRLRGQGMPRLQGAGT-GDLIVEYEIAVPKQLSPEAREALEAYA 346

Length = 371

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score =  268 bits (687), Expect = 5e-86
 Identities = 154/366 (42%), Positives = 206/366 (56%), Gaps = 23/366 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LGVPK A+  EIK AYRKLAR+YHPD NK +  A E+FKEIS AY+VLSD+KKR 
Sbjct: 10  DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK 69

Query: 137 MYDQ----YGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGF-------- 184
            YD+    +G  G +   GGG        FDL + F G + GG       G         
Sbjct: 70  EYDEARSLFGNGGFRPGPGGGGGG--GFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLF 127

Query: 185 -RTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICS 243
            R  RR+   +G D+  ++ L F+E+I GA     L+    C  C+GTGAK G+  R+C 
Sbjct: 128 NRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCP 187

Query: 244 TCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPP 303
           TC G GQV R      G FS    CP C G G +  + C  C G GR +  + ++V++P 
Sbjct: 188 TCSGTGQVSRN----SGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPA 243

Query: 304 GVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGT 363
           GVS G  +R+ G+G  G RGGP GDLYV + V+  P   R G +L  T+ +++ +A +G 
Sbjct: 244 GVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGA 303

Query: 364 VVKVKTVEGIS-ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAK 422
            V+V T+ G    +++PPGT  G VL +  KGA +  K   RGD L TV+V +P  +S K
Sbjct: 304 EVRVPTLGGPPVTVKLPPGTPNGRVLRVRGKGAVR--KDGTRGDLLVTVEVAVPKDLSGK 361

Query: 423 ERELLE 428
            RE LE
Sbjct: 362 AREALE 367

Length = 389

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score =  266 bits (681), Expect = 3e-85
 Identities = 133/375 (35%), Positives = 199/375 (53%), Gaps = 27/375 (7%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKK 134
              DYY  LGV K+AS +EI+ AYRKLA+QYHPD+NK P A +K  EI+ A +VL D  K
Sbjct: 2   KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDK 61

Query: 135 RAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQT---------GFR 185
           R  YDQ+G A        GSS +++N F  FE  F  +MG     + T            
Sbjct: 62  RKQYDQFGHAAFD-----GSSGFSSN-FGDFEDLFS-NMGSSGFSSFTNIFSDFFGSNKS 114

Query: 186 TRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTC 245
             +RST  KG+ +  DI L F E +FG +K  EL  L  C  C G+GA+  S + IC+ C
Sbjct: 115 DYQRST--KGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNC 172

Query: 246 GGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGV 305
            G G+V+      F  F Q + C  C G G++I   C+ C G+G+   +K I+V +P G+
Sbjct: 173 HGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGI 232

Query: 306 STGSILRVVGEGDAGPRGGPPGDLYVYL-----DVEEIPGIQRDGIDLFSTISISYLDAI 360
                +++  +G A    G  GDL + +      V EI     +  D+  T +ISYLDAI
Sbjct: 233 RPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEII----NNNDILMTYNISYLDAI 288

Query: 361 MGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIS 420
           +G  + +KT++G  + ++P      +++++  KG  K      RGD +  V + +P  +S
Sbjct: 289 LGNEIIIKTLDGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLS 348

Query: 421 AKERELLEELASLRN 435
            KE+EL+E++    +
Sbjct: 349 KKEKELIEQIYEQTS 363

Length = 372

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score =  260 bits (666), Expect = 4e-83
 Identities = 140/360 (38%), Positives = 202/360 (56%), Gaps = 17/360 (4%)

Query: 76  SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
           S DYY  LGV K+AS  ++K AY KLA+QYHPD      A +KFKEI+AAY+VL D++KR
Sbjct: 2   SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKR 61

Query: 136 AMYDQYGEAGVKSTV----GGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRST 191
           A YD++G    ++      GG    +  +  D+F  FF   MGG         R+R  S+
Sbjct: 62  AAYDRFGHDAFQNQQSRGGGGNHGGFHPDINDIFGDFFSDFMGG-------SRRSRPTSS 114

Query: 192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQV 251
             +G DL+Y++ +   E+  G EK    S    C+ C G+G++ G  +  C  C G G  
Sbjct: 115 KVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVG-A 173

Query: 252 MRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311
            R  Q   G F+    C  C G G++I   C+KC G GR   ++N+ V +P GV  G+ +
Sbjct: 174 TRMQQ---GFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRI 230

Query: 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVE 371
           R  GEG+AG RGG  GDLYV + ++     + DG +L   + IS+++A +G  ++V  +E
Sbjct: 231 RHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIE 290

Query: 372 GIS-ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEEL 430
           G    L +P GTQ GD L L  KG  K+ + +IRGD L  + V +P  +S ++RELLEE 
Sbjct: 291 GGKVNLTIPAGTQNGDQLRLRSKGMSKM-RSTIRGDMLTHIHVEVPKNLSKRQRELLEEF 349

Length = 372

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score =  247 bits (632), Expect = 1e-77
 Identities = 136/380 (35%), Positives = 192/380 (50%), Gaps = 25/380 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRA 136
           D+Y  LGV   AS +EIK AYRKLAR+ HPD N  +P A E+FK +S A++VLSD  KR 
Sbjct: 10  DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK 69

Query: 137 MYDQY-----------GEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGG-------FPG 178
            YD+                     GG  +      F+L + F     GG       F G
Sbjct: 70  EYDETRRLFAGGGFGGRRFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGG 129

Query: 179 MNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSK 238
           +   G  + R S   +G DL  +  L+F E+  G      L+    C  C G+GA+ G+ 
Sbjct: 130 LFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTS 189

Query: 239 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIK 298
            ++C TC G G + R +Q  FG FS+   C  C G G +I + C +C G G     + I 
Sbjct: 190 PKVCPTCNGSGVISR-NQGAFG-FSEP--CTDCRGTGSIIEDPCEECKGTGVTTRTRTIN 245

Query: 299 VKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLD 358
           V++PPGV  G  +R+ G+G+AG RG P GDLYV + V       RDG DL  T+ +S+ +
Sbjct: 246 VRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTE 305

Query: 359 AIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNR 418
             +G+ + V T++G   ++VP GT  G +L +  +G PK  +    GD L TVKV +P  
Sbjct: 306 LALGSTLSVPTLDGPVGVKVPAGTADGRILRVRGRGVPK--RSGGAGDLLVTVKVAVPPN 363

Query: 419 ISAKERELLEELASLRNTTG 438
           +     E LE  A     +G
Sbjct: 364 LDGAAAEALEAYAEAERASG 383

Length = 392

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score =  242 bits (618), Expect = 4e-76
 Identities = 139/364 (38%), Positives = 196/364 (53%), Gaps = 25/364 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKR 135
           DYY  LGV ++AS ++IK A+R+LA+++HPD++      A EKFKEIS AYEVLSD +KR
Sbjct: 4   DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKR 63

Query: 136 AMYDQYGEAGVKSTVGGGSSAYTTNPF-------DLFETFFGPSMGGFPGMNQTGFRTRR 188
             YDQ G        G G S +  + F       D+F   FG   G F     +GF   +
Sbjct: 64  RQYDQTG----TVDFGAGGSNFNWDNFTHFSDINDIFNQIFG---GNFGSDFFSGF-GNQ 115

Query: 189 RSTVTKGEDL--RYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCG 246
           +ST     D+    DI LE  ++ +G EK  +      C  C+GTGAK G K+  C TC 
Sbjct: 116 QSTRNIDLDIYTNLDISLE--DAYYGTEKRIKYRRNAMCPDCSGTGAKNG-KLITCPTCH 172

Query: 247 GRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVS 306
           G GQ        F     V+ C +CGG G +  E C +C+G G + + ++I VK+P G +
Sbjct: 173 GTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGAT 232

Query: 307 TGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVK 366
               LRV G+G +   GG  GDLYV L V   P IQR   DL+    I++  A +G  ++
Sbjct: 233 DNLRLRVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIE 290

Query: 367 VKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKEREL 426
           +K       L++P GTQPG+VL +   G P LN     GD L  + V +P R+++K++EL
Sbjct: 291 IKLFREKYNLKIPEGTQPGEVLKIKGAGMPHLNGHG-SGDLLVRINVEVPKRLTSKQKEL 349

Query: 427 LEEL 430
           + E 
Sbjct: 350 IREF 353

Length = 365

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score =  211 bits (538), Expect = 3e-64
 Identities = 119/359 (33%), Positives = 197/359 (54%), Gaps = 16/359 (4%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEK-FKEISAAYEVLSDDKKRA 136
           DYY  LG+ K AS  EIK AYRK+A +YHPD NK     E  FKE + AYEVL DD KRA
Sbjct: 4   DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRA 63

Query: 137 MYDQYGEAGVKSTVGGGSSAYTT--NPF-DLFETFFGPSMGGFPGMNQTGFRTRRRSTVT 193
            YD++G    +   GGG   ++   + F D+FE F G     F   N+   + R+     
Sbjct: 64  QYDRFGHTAFEG--GGGFEGFSGGFSGFSDIFEDF-GDIFDSFFTGNRGQDKNRKHE--- 117

Query: 194 KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMR 253
           KG+DL Y I +   ++  G +    ++    CE C G  ++ G+   IC+ C G G+VM+
Sbjct: 118 KGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQ 177

Query: 254 TDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313
                 G F   + CP C G G++IS  C+ C G+G ++ K+ I++K+P G+     +++
Sbjct: 178 GG----GFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKM 233

Query: 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI 373
            G+G   P     GDLY+ + ++     +R+G DL++T+ IS+  A +G  +K++T+   
Sbjct: 234 RGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASK 293

Query: 374 S-ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELA 431
             ++++P GT+  + +++  +G P L+     G+ +  +K+  P  +++   +LLE L+
Sbjct: 294 KIKIKIPKGTENDEQIIIKNEGMPILHTEKF-GNLILIIKIKTPKNLNSNAIKLLENLS 351

Length = 365

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score =  186 bits (475), Expect = 3e-54
 Identities = 114/359 (31%), Positives = 178/359 (49%), Gaps = 32/359 (8%)

Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
            Y  L + K  +  EIK AYRKLA ++HPD   +P   EKFKEIS AYEVLSD +KR +Y
Sbjct: 30  LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDP---EKFKEISRAYEVLSDPEKRKIY 86

Query: 139 DQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDL 198
           D+YGE G++            +  DLF+  FG   GG           R+     +GED+
Sbjct: 87  DEYGEEGLEGGEQPA------DASDLFDLIFG---GG-----------RKPGGKKRGEDI 126

Query: 199 RYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTP 258
              + +   +   GA ++  ++    C  C G G    + +  C  C G+G  ++  Q  
Sbjct: 127 VSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVD-CKLCNGQGIRVQIRQMG 185

Query: 259 FGLFSQVSVCPSCGGEGEVISE--YCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGE 316
             +    S C SC G+G++I E   C+ CSG+G  + +K ++V +  GV     +   GE
Sbjct: 186 SMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGE 245

Query: 317 GDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG-ISE 375
            D  P    PG++   L+ +     +R+G DLF T  IS  +A+ G V  +  ++G    
Sbjct: 246 ADEKP-NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLL 304

Query: 376 LQVPPG--TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP--NRISAKERELLEEL 430
           +  PPG   +PGD+ V+  +G P    P  +G+   T +V  P   + + +E+E+L+ L
Sbjct: 305 VNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSL 363

Length = 421

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score =  176 bits (448), Expect = 7e-52
 Identities = 124/362 (34%), Positives = 170/362 (46%), Gaps = 80/362 (22%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKK 134
           A  DYYA LGVPK+AS  EIK A++KLAR+YHPDVNK PGA EKFKEI+ AY VLSD +K
Sbjct: 2   AYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEK 61

Query: 135 RAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTK 194
           R +YD YG           S+ +   P         P  G F G N   F          
Sbjct: 62  RRIYDTYGTTA-------ASAGWQGPPPG------PPGGGDFSGFNVGDFS--------- 99

Query: 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
                     +F + +FG    F            G G   GS         GR      
Sbjct: 100 ----------DFFQQLFGGRGGF-----------GGFGDLFGSV--------GRRARKGR 130

Query: 255 D---QTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311
           D   + P  L          GGE +V+     + S            V++PPGV  G ++
Sbjct: 131 DLEAELPLTLEEAYR-----GGE-KVVEVAGERLS------------VRIPPGVREGQVI 172

Query: 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVE 371
           R+ G+G  G      GDLY+ + +   P  + +G DL++T+ +    A++G  V+V T++
Sbjct: 173 RLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLD 226

Query: 372 GISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELA 431
           G  E+ +PP TQ G  L L  KG P+   P+ RGD    V++TIP R + +E  L ++LA
Sbjct: 227 GPVEVTIPPRTQAGRKLRLKGKGWPR--GPAGRGDQYAEVRITIPTRPTPEEERLYKQLA 284

Query: 432 SL 433
            L
Sbjct: 285 EL 286

Length = 291

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score =  175 bits (445), Expect = 1e-50
 Identities = 117/355 (32%), Positives = 185/355 (52%), Gaps = 20/355 (5%)

Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAM 137
           YY  L V K ++ + IK +YRKLA +YHPD N  +  A EKFK I+ AY VLSD+KKRA+
Sbjct: 5   YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRAL 64

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGED 197
           YD+YG+ G+     G S +  ++ F+   +FF  + G        G R  +R   +   D
Sbjct: 65  YDRYGKKGLNQ--AGASQSDFSDFFEDLGSFFEDAFG-------FGARGSKRQKSSIAPD 115

Query: 198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQV-MRTDQ 256
               I L F E++FG +K  ++ +   CE C GTGAK    +  C  C G+GQV MR   
Sbjct: 116 YLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAK-DKALETCKQCNGQGQVFMRQ-- 172

Query: 257 TPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGE 316
              G  S    C +C G+G++I   C+ C G+  I   + I   +P G+   + + +  +
Sbjct: 173 ---GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNK 229

Query: 317 GDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS-E 375
           G+   + G  GDLY+   V+E    +R+G DLF    + +    +G  +KV +++G   E
Sbjct: 230 GNEYEK-GKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELE 288

Query: 376 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEEL 430
           L++P   +         +G  K  + S RG  +  ++V  P  ++ +++ELLE+L
Sbjct: 289 LKIPRNARDRQTFAFRNEGV-KHPESSYRGSLIVELQVIYPKSLNKEQQELLEKL 342

Length = 369

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score =  167 bits (427), Expect = 3e-50
 Identities = 64/130 (49%), Positives = 85/130 (65%), Gaps = 1/130 (0%)

Query: 290 RIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349
           R+R KK + VK+P GV  G  LR+ GEGDAGP GGPPGDLYV + V+  P  +RDG DL+
Sbjct: 30  RVREKKTLTVKIPAGVDDGQRLRLRGEGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLY 89

Query: 350 STISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLF 409
             + IS  +A++G  ++V T+ G  +L++PPGTQPG VL L  KG P+L     RGD   
Sbjct: 90  CEVPISLTEALLGGEIEVPTLGGKVKLKIPPGTQPGTVLRLKGKGMPRLR-GGGRGDLYV 148

Query: 410 TVKVTIPNRI 419
            VKV  P ++
Sbjct: 149 EVKVEFPKKL 158

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score =  146 bits (371), Expect = 2e-40
 Identities = 101/360 (28%), Positives = 157/360 (43%), Gaps = 79/360 (21%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYYA +GV  +   K IK AYR+LAR+YHPDV+KEP A  +FKE++ A+EVLSD+++RA 
Sbjct: 5   DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64

Query: 138 YDQYGEAGVKSTVG-----GGSSAYTTNPF-DLFETFFGPSMGGFPGMNQTGFRTRRRST 191
           YDQ  +             G   ++    F D+F + FG          Q   ++R+R  
Sbjct: 65  YDQLWQHRNDPQFNRQFQHGDGQSFNAEDFDDIFSSIFG----------QHARQSRQRPA 114

Query: 192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQV 251
             +G D+  ++ +   E++   E +  +S+     V    G                   
Sbjct: 115 -ARGHDIEIEVAVFLEETL--TEHKRTISY--NLPVYNAFG------------------- 150

Query: 252 MRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311
           M   + P  L  ++   P+  G G+             RIRLK                 
Sbjct: 151 MIEQEIPKTLNVKI---PAGVGNGQ-------------RIRLK----------------- 177

Query: 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVE 371
              G+G  G  GGP GDL++ + +   P     G DL   + ++  +A +G  V V T++
Sbjct: 178 ---GQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLK 234

Query: 372 GISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELA 431
               L +PPG+Q G  L +  KG   L      GD    +K+ +P +   K   L ++LA
Sbjct: 235 ESILLTIPPGSQAGQRLRVKGKG---LVSKKQTGDLYAVLKIVMPPKPDEKTAALWQQLA 291

Length = 306

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score =  118 bits (297), Expect = 9e-33
 Identities = 42/63 (66%), Positives = 48/63 (76%), Gaps = 1/63 (1%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGA-TEKFKEISAAYEVLSDDKKRA 136
           DYY  LGVP+ AS +EIK AYRKLA +YHPD N    A  EKFKEI+ AYEVLSD +KRA
Sbjct: 1   DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60

Query: 137 MYD 139
           +YD
Sbjct: 61  IYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score =  100 bits (251), Expect = 3e-26
 Identities = 38/59 (64%), Positives = 43/59 (72%), Gaps = 2/59 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK--EPGATEKFKEISAAYEVLSDDKK 134
           DYY  LGVP+ AS  EIK AYRKLA +YHPD N   +  A EKFKEI+ AYEVLSD +K
Sbjct: 2   DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40

 Score =  100 bits (250), Expect = 5e-26
 Identities = 32/65 (49%), Positives = 42/65 (64%)

Query: 225 CEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK 284
           C  C G+GAK G+K + C TCGG GQV +   T FG F   + CP+CGG G++I + C K
Sbjct: 1   CPTCNGSGAKPGTKPKTCPTCGGSGQVRQVQGTGFGFFQTQTTCPTCGGTGKIIKDPCPK 60

Query: 285 CSGEG 289
           C G+G
Sbjct: 61  CKGKG 65

Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding. Length = 65

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 99.5 bits (249), Expect = 6e-26
 Identities = 38/55 (69%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSD 131
           DYY  LGVP  AS +EIK AYRKLA +YHPD N  +P A EKFKEI+ AYEVLSD
Sbjct: 1   DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 98.7 bits (245), Expect = 1e-23
 Identities = 66/274 (24%), Positives = 89/274 (32%), Gaps = 54/274 (19%)

Query: 74  CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSD 131
               DYY  LGVP +AS +EIK AYRKLA +YHPD N      A EKFKEI+ AYE+LSD
Sbjct: 3   SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSD 62

Query: 132 DKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRST 191
            ++RA YD+ G            SA    P +      G                R +  
Sbjct: 63  PERRAEYDKIGADNYFPGKSYRESAAF--PIEGSLQLTGLYE-----------EWRGKRN 109

Query: 192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQV 251
            T+ +    D++      +  A   F                + GS  R           
Sbjct: 110 KTERKASLADLLSRGLSGLAAALSLFA----------DEAALRSGSLRRRDLA------- 152

Query: 252 MRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311
                  F                                 L K +K  +  G   G  L
Sbjct: 153 -ANLADNFEEALAGVK-------------------KAVARLLGKALKSTIKAGALEGKAL 192

Query: 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDG 345
           R+ G   +    G  G   +    +  P    +G
Sbjct: 193 RLKGLLKSAR--GALGKARLKELSKRHPPFALEG 224

Length = 237

>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain

 Score = 93.0 bits (232), Expect = 3e-23
 Identities = 32/81 (39%), Positives = 54/81 (66%), Gaps = 1/81 (1%)

Query: 347 DLFSTISISYLDAIMGTVVKVKTVEGIS-ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRG 405
           DL+ T+ IS  +A++G  V+V T++G   ++++P GTQPGD L +  KG P     + RG
Sbjct: 1   DLYVTLPISLKEALLGGTVEVPTLDGRKVKIKIPAGTQPGDKLRIKGKGMPINKGGNGRG 60

Query: 406 DHLFTVKVTIPNRISAKEREL 426
           D + T+ V IP ++S++++EL
Sbjct: 61  DLIVTLNVKIPKKLSSEQKEL 81

This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 95.7 bits (237), Expect = 7e-21
 Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 6/92 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LG+ + A  +EIK A+RKLA++YHPD NK P A   F EI+ A +VLS+ KKRA 
Sbjct: 3   DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRAN 62

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFF 169
           YD+YG  GV          +     D+F +FF
Sbjct: 63  YDKYGHDGVD-----REDDFDFQA-DVFNSFF 88

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain

 Score = 83.2 bits (206), Expect = 5e-20
 Identities = 30/65 (46%), Positives = 40/65 (61%)

Query: 225 CEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK 284
           C  C GTGAK G K + C  C G GQV++  +TP G+F     CP CGG G++I + C+ 
Sbjct: 1   CPHCHGTGAKPGKKPKTCPQCNGSGQVVKRQRTPGGVFQMQQTCPKCGGTGKIIKDPCKV 60

Query: 285 CSGEG 289
           C G+G
Sbjct: 61  CKGKG 65

The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found. Length = 65

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score = 62.4 bits (153), Expect = 1e-11
 Identities = 50/173 (28%), Positives = 68/173 (39%), Gaps = 47/173 (27%)

Query: 196 EDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT-------GAKMGSKMRICSTCGGR 248
            DLRYD+ L   E+ FG EKE ++    T      T       G   G ++R+     G 
Sbjct: 1   ADLRYDLELTLEEAYFGKEKEIKIPRKVTRVREKKTLTVKIPAGVDDGQRLRL----RGE 56

Query: 249 GQVMRTDQTPFGLFSQVSVCPS----------------------CGGEGEVISEYCRKCS 286
           G        P  L+  + V P                        GGE EV +       
Sbjct: 57  GDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLYCEVPISLTEALLGGEIEVPT------- 109

Query: 287 GEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIP 339
                 L   +K+K+PPG   G++LR+ G+G    RGG  GDLYV + V E P
Sbjct: 110 ------LGGKVKLKIPPGTQPGTVLRLKGKGMPRLRGGGRGDLYVEVKV-EFP 155

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 14/70 (20%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPD--VNKEPG--------ATEKFKEISAAYE 127
           D Y  LGV +S   +EIK AYRKL  ++HPD  V K  G        A EK +EI AAYE
Sbjct: 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAK--GLPPEMMEMAKEKAQEIQAAYE 258

Query: 128 VLSDDKKRAM 137
           ++   K++  
Sbjct: 259 LIK--KQKGF 266

Length = 267

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 63.3 bits (153), Expect = 2e-10
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
           +Y  LGV  +A  KEI   Y KLA  Y+P          KFK+I+ AY++L D  K+ MY
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMY 634

Query: 139 DQYGEAGVK 147
           +++G  G+K
Sbjct: 635 NKFGYDGIK 643

Length = 1136

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 62.7 bits (152), Expect = 2e-10
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 10/84 (11%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGAT--------EKFKEISAAYEVL 129
           D Y  LG+ +  S ++IK  YR L+ ++HPD  K P           EK+K I+ AY +L
Sbjct: 99  DPYEILGIDQDTSERDIKKRYRMLSMKFHPD--KAPPMVNELRSEYEEKYKTITKAYGLL 156

Query: 130 SDDKKRAMYDQYGEAGVKSTVGGG 153
           +D K+R  Y  YG          G
Sbjct: 157 TDKKRRENYLNYGTPDSPQHTSEG 180

Length = 610

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 28/68 (41%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 78  DYYATLGVPK---SASGKEIKAAYRKLARQYHPDVNKEPGAT---EKFKEISAAYEVLSD 131
           D YA LG+ K    A   +I  A++K   +YHPD     G     E FK I  A EVL D
Sbjct: 44  DLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGD 103

Query: 132 DKKRAMYD 139
            K R  YD
Sbjct: 104 RKLRLQYD 111

Length = 379

>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain

 Score = 43.7 bits (104), Expect = 8e-06
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 295 KNIKVKVPPGVSTGSILRVVGEG-DAGPRGGPPGDLYVYLDVEEIP 339
           + +K+K+P G   G  LR+ G+G      G   GDL V L+V +IP
Sbjct: 27  RKVKIKIPAGTQPGDKLRIKGKGMPINKGGNGRGDLIVTLNV-KIP 71

This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 78  DYYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVL 129
           D +   G+P++       +K  YR+L R YHPD   +        A ++  E++ AY+ L
Sbjct: 2   DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTL 61

Query: 130 SDDKKRAMY 138
            D   RA Y
Sbjct: 62  KDPLLRAEY 70

Length = 174

>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 92  KEIKAAYRKLARQYHPDVNK----EPGATEKFKEISAAYEVLSDDKKRAMY 138
             ++  YR+L  QYHPD +     +  A+++   ++ AY  L D  +RA Y
Sbjct: 6   SRLRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEY 56

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock [Protein fate, Protein folding and stabilization]. Length = 155

>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 83  LGVPKSASGKE--IKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140
           LG+P+SA G    ++ AY +   ++HPD   + G  EK KE++  Y+   +  K      
Sbjct: 11  LGLPRSAWGNLPLMRKAYLRKCLEFHPD---KGGDEEKMKELNTLYKKFRESVKSLRDLD 67

Query: 141 YGE 143
             E
Sbjct: 68  GEE 70

Length = 153

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score = 40.1 bits (95), Expect = 6e-04
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 347 DLFSTISISYLDAIMGTVVKVK------TVEGISELQV--PPGTQPGDVLVLAKKGAPKL 398
           DL   + ++  +A  G   ++K       V     L V  P G   G  L L  +G    
Sbjct: 2   DLRYDLELTLEEAYFGKEKEIKIPRKVTRVREKKTLTVKIPAGVDDGQRLRLRGEGDAGP 61

Query: 399 NKPSIRGDHLFTVKV 413
           N     GD    ++V
Sbjct: 62  NG-GPPGDLYVVIRV 75

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 14/61 (22%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPD-----------VNKEPGATEKFKEISAAY 126
           D    LGV   A    IK AYRKL  + HPD           + K     EK +EI  AY
Sbjct: 114 DALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEK---LKEKLQEIQEAY 170

Query: 127 E 127
           E
Sbjct: 171 E 171

Length = 174

>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 83  LGVPKSASGKE--IKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           LG+P +A G    ++ AY +  ++YHPD   + G  EK K +++ Y+ L +  K A 
Sbjct: 17  LGLPMAAWGNLPLMRKAYLRKCKEYHPD---KGGDEEKMKRLNSLYKKLQEGVKSAR 70

Length = 647

>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 17/75 (22%), Positives = 22/75 (29%), Gaps = 17/75 (22%)

Query: 218 ELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE-GE 276
             S    C  C G G         C  CGG G+V+               C  CG     
Sbjct: 49  FASFEIPCPKCRGKGTVTV--YDTCPECGGTGKVLT--------------CDICGDIIVP 92

Query: 277 VISEYCRKCSGEGRI 291
                C +C  + +I
Sbjct: 93  WEEGLCPECRRKPKI 107

Length = 715

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	466
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	100.0
PRK14296	372	chaperone protein DnaJ; Provisional	100.0
PRK14288	369	chaperone protein DnaJ; Provisional	100.0
PRK14277	386	chaperone protein DnaJ; Provisional	100.0
PRK14298	377	chaperone protein DnaJ; Provisional	100.0
PRK14287	371	chaperone protein DnaJ; Provisional	100.0
PRK14280	376	chaperone protein DnaJ; Provisional	100.0
PRK14276	380	chaperone protein DnaJ; Provisional	100.0
PRK14286	372	chaperone protein DnaJ; Provisional	100.0
PRK14278	378	chaperone protein DnaJ; Provisional	100.0
PTZ00037	421	DnaJ_C chaperone protein; Provisional	100.0
PRK14297	380	chaperone protein DnaJ; Provisional	100.0
PRK14279	392	chaperone protein DnaJ; Provisional	100.0
PRK14281	397	chaperone protein DnaJ; Provisional	100.0
PRK14282	369	chaperone protein DnaJ; Provisional	100.0
PRK14285	365	chaperone protein DnaJ; Provisional	100.0
PRK14301	373	chaperone protein DnaJ; Provisional	100.0
PRK14295	389	chaperone protein DnaJ; Provisional	100.0
PRK14294	366	chaperone protein DnaJ; Provisional	100.0
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	100.0
PRK14284	391	chaperone protein DnaJ; Provisional	100.0
PRK14283	378	chaperone protein DnaJ; Provisional	100.0
PRK14293	374	chaperone protein DnaJ; Provisional	100.0
PRK14300	372	chaperone protein DnaJ; Provisional	100.0
PRK14291	382	chaperone protein DnaJ; Provisional	100.0
PRK10767	371	chaperone protein DnaJ; Provisional	100.0
PRK14289	386	chaperone protein DnaJ; Provisional	100.0
PRK14290	365	chaperone protein DnaJ; Provisional	100.0
PRK14292	371	chaperone protein DnaJ; Provisional	100.0
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	100.0
PRK14299	291	chaperone protein DnaJ; Provisional	100.0
PRK10266	306	curved DNA-binding protein CbpA; Provisional	100.0
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	100.0
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	100.0
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	100.0
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.85
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	99.84
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.77
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.71
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.71
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.7
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.68
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.66
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.65
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.63
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.6
PHA03102	153	Small T antigen; Reviewed	99.6
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.58
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.58
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.57
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.56
PRK14284	391	chaperone protein DnaJ; Provisional	99.55
PRK14282	369	chaperone protein DnaJ; Provisional	99.54
PRK14298	377	chaperone protein DnaJ; Provisional	99.52
PRK14294	366	chaperone protein DnaJ; Provisional	99.51
PRK14290	365	chaperone protein DnaJ; Provisional	99.5
PRK10767	371	chaperone protein DnaJ; Provisional	99.5
PRK14285	365	chaperone protein DnaJ; Provisional	99.49
PRK14301	373	chaperone protein DnaJ; Provisional	99.49
PRK14300	372	chaperone protein DnaJ; Provisional	99.47
PRK14278	378	chaperone protein DnaJ; Provisional	99.47
PRK14286	372	chaperone protein DnaJ; Provisional	99.46
PRK14287	371	chaperone protein DnaJ; Provisional	99.46
PRK14279	392	chaperone protein DnaJ; Provisional	99.45
PRK14288	369	chaperone protein DnaJ; Provisional	99.45
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.44
PRK14280	376	chaperone protein DnaJ; Provisional	99.44
PRK14276	380	chaperone protein DnaJ; Provisional	99.44
PRK14281	397	chaperone protein DnaJ; Provisional	99.44
PRK14296	372	chaperone protein DnaJ; Provisional	99.42
PRK14277	386	chaperone protein DnaJ; Provisional	99.42
PRK14297	380	chaperone protein DnaJ; Provisional	99.42
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	99.41
PRK14295	389	chaperone protein DnaJ; Provisional	99.41
PRK14289	386	chaperone protein DnaJ; Provisional	99.4
PRK14293	374	chaperone protein DnaJ; Provisional	99.4
PRK14283	378	chaperone protein DnaJ; Provisional	99.39
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.38
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.38
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.37
PRK14291	382	chaperone protein DnaJ; Provisional	99.35
PRK14292	371	chaperone protein DnaJ; Provisional	99.34
PRK01356	166	hscB co-chaperone HscB; Provisional	99.34
PRK05014	171	hscB co-chaperone HscB; Provisional	99.34
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.3
PRK00294	173	hscB co-chaperone HscB; Provisional	99.27
PRK03578	176	hscB co-chaperone HscB; Provisional	99.26
PTZ00100	116	DnaJ chaperone protein; Provisional	99.26
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.16
PHA02624	647	large T antigen; Provisional	99.12
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.04
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	98.96
PRK01773	173	hscB co-chaperone HscB; Provisional	98.84
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.82
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	98.82
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.79
PRK14299	291	chaperone protein DnaJ; Provisional	98.77
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.66
PLN03165	111	chaperone protein dnaJ-related; Provisional	98.57
PRK10266	306	curved DNA-binding protein CbpA; Provisional	98.53
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.19
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.11
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	97.94
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	97.91
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.84
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	97.79
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.62
PLN03165	111	chaperone protein dnaJ-related; Provisional	96.76
KOG2813	406	consensus Predicted molecular chaperone, contains	96.73
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	96.48
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	96.36
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	96.18
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.89
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	94.43
KOG0431	453	consensus Auxilin-like protein and related protein	94.33
KOG2813	406	consensus Predicted molecular chaperone, contains	93.95
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	93.53
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	91.27
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	80.94

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-91  Score=697.92  Aligned_cols=347  Identities=47%  Similarity=0.857  Sum_probs=317.2

Q ss_pred             cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhhhhcccccccccCccccc-CC
Q 012301           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV-GG  152 (466)
Q Consensus        75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~-~~  152 (466)
                      +.+|||+||||+++||.+|||+|||+||++||||+|+ +++|+++|++|+|||||||||+||++||+||+++++++. ++
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg   81 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGG   81 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCC
Confidence            5789999999999999999999999999999999999 789999999999999999999999999999999986322 22


Q ss_pred             -CCCCCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCc
Q 012301          153 -GSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT  231 (466)
Q Consensus       153 -~~~~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~Gt  231 (466)
                       +.+++..++.|||++|||++   .+       ++.++..+.+|.|+.+.|+|||+|||+|+++++.+++.+.|+.|+|+
T Consensus        82 ~g~~~fgg~~~DIF~~~FgGg---~~-------~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~Gs  151 (371)
T COG0484          82 FGFGGFGGDFGDIFEDFFGGG---GG-------GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGS  151 (371)
T ss_pred             CCcCCCCCCHHHHHHHhhcCC---Cc-------ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCC
Confidence             12223225678899998621   10       11223346789999999999999999999999999999999999999


Q ss_pred             ccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEE
Q 012301          232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL  311 (466)
Q Consensus       232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i  311 (466)
                      |++.+....+|++|+|+|++...+++  |.|++.++|+.|+|+|++++++|.+|+|.|++.+.++++|+||+|+.+|++|
T Consensus       152 Gak~gt~~~tC~tC~G~G~v~~~~~~--g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~i  229 (371)
T COG0484         152 GAKPGTDPKTCPTCNGSGQVRTVQRT--GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRI  229 (371)
T ss_pred             CCCCCCCCCcCCCCCCcCeEEEEEee--eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEE
Confidence            99999999999999999999887777  8888889999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEc
Q 012301          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLA  391 (466)
Q Consensus       312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~  391 (466)
                      ++.|+|+++++++++|||||+|.|++|+.|.|+|+|||++++|++.+|+||++++|+||||+++|+||+++|+|++++|+
T Consensus       230 r~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl~  309 (371)
T COG0484         230 RLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRLR  309 (371)
T ss_pred             EEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEEc
Confidence            99999999998999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301          392 KKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR  434 (466)
Q Consensus       392 g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~  434 (466)
                      |+|||..++ ..+|||||+|+|++|++|+.+|+++|++|++..
T Consensus       310 gkG~p~~~~-~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~  351 (371)
T COG0484         310 GKGMPKLRS-GGRGDLYVRVKVETPKNLSDEQKELLEEFAKSL  351 (371)
T ss_pred             CCCccccCC-CCcCCEEEEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            999998765 457999999999999999999999999999876

>PRK14296 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=6.9e-81  Score=639.35  Aligned_cols=345  Identities=36%  Similarity=0.672  Sum_probs=302.5

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccC--CC
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--GG  153 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~--~~  153 (466)
                      .+|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+||++|++||+||+++++.+.+  ++
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~   82 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSN   82 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcC
Confidence            4699999999999999999999999999999999988889999999999999999999999999999887653111  11


Q ss_pred             CCCCC-----------CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeee
Q 012301          154 SSAYT-----------TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL  222 (466)
Q Consensus       154 ~~~~~-----------~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~  222 (466)
                      .+++.           .++.|+|+.||++   + .       +  +.....++.|+.+.|.|+|+|+|+|+++++.+.+.
T Consensus        83 ~~~~~~~~~~~~~~g~~~f~d~f~~~fgg---g-~-------~--~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~  149 (372)
T PRK14296         83 FGDFEDLFSNMGSSGFSSFTNIFSDFFGS---N-K-------S--DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLL  149 (372)
T ss_pred             CCccccccccccccccccchhhhhhhcCC---C-c-------c--CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeee
Confidence            01110           0111334444431   0 0       0  01123578999999999999999999999999999


Q ss_pred             eecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcC
Q 012301          223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP  302 (466)
Q Consensus       223 ~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip  302 (466)
                      +.|+.|+|+|........+|+.|+|+|.++..++.++.++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||
T Consensus       150 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip  229 (372)
T PRK14296        150 TNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIP  229 (372)
T ss_pred             eccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEEC
Confidence            99999999999988888999999999999888777765566668999999999999999999999999999999999999


Q ss_pred             CCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccC-CcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCC
Q 012301          303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRD-GIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPG  381 (466)
Q Consensus       303 ~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~-g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g  381 (466)
                      +|+++|++|+|+|+|++.+.++.+|||||+|++++|+.|+|+ |+||++++.|+|+|||+|+++.|+||||+++|+||++
T Consensus       230 ~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~  309 (372)
T PRK14296        230 KGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKS  309 (372)
T ss_pred             CCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCc
Confidence            999999999999999998767889999999999999999995 8999999999999999999999999999988999999


Q ss_pred             CccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhh
Q 012301          382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL  433 (466)
Q Consensus       382 ~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~  433 (466)
                      ++||++++|+|+|||...+++.+|||||+|+|.||+.|+++|+++|++|+++
T Consensus       310 t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~~  361 (372)
T PRK14296        310 INSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQ  361 (372)
T ss_pred             cCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            9999999999999997655567899999999999999999999999999975

>PRK14288 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.9e-79  Score=624.87  Aligned_cols=343  Identities=32%  Similarity=0.605  Sum_probs=297.5

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCC
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS  154 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~  154 (466)
                      ..|||+||||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||++|++||+||+++++...+ +.
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~-~~   80 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGA-SQ   80 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCC-Cc
Confidence            579999999999999999999999999999999997 4678999999999999999999999999999887653211 11


Q ss_pred             CCCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccc
Q 012301          155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK  234 (466)
Q Consensus       155 ~~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~  234 (466)
                      ..| .++|+.|++||+..||+ ++.     +. .+....++.|+.+.|.|+|+|+|+|+++++.+.+.+.|+.|+|+|..
T Consensus        81 ~~~-~~~f~~~~~~F~~~fg~-g~~-----~~-~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~  152 (369)
T PRK14288         81 SDF-SDFFEDLGSFFEDAFGF-GAR-----GS-KRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAK  152 (369)
T ss_pred             ccc-ccchhhHHHHHHhhcCC-CCc-----cc-CcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccC
Confidence            112 23344344455433221 000     00 11123468999999999999999999999999999999999999998


Q ss_pred             cCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEc
Q 012301          235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV  314 (466)
Q Consensus       235 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~  314 (466)
                      .. ...+|+.|+|+|.+....    |++++.++|+.|.|+|+++.+.|..|.|.|.+.+.++++|.||+|+++|++|+|+
T Consensus       153 ~~-~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~  227 (369)
T PRK14288        153 DK-ALETCKQCNGQGQVFMRQ----GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLK  227 (369)
T ss_pred             CC-CCcCCCCCCCCcEEEEEe----ceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEc
Confidence            75 568999999999876543    6777778999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCCCccCcEEEEccC
Q 012301          315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKK  393 (466)
Q Consensus       315 g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g~~~g~~~~i~g~  393 (466)
                      |+|++.+ ++.+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|++++|+||||+ ++|+||+++++|++++|+|+
T Consensus       228 g~G~~~~-~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~  306 (369)
T PRK14288        228 NKGNEYE-KGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNE  306 (369)
T ss_pred             cCccCCC-CCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCC
Confidence            9999966 578999999999999999999999999999999999999999999999997 68999999999999999999


Q ss_pred             CCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301          394 GAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR  434 (466)
Q Consensus       394 GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~  434 (466)
                      |||..+. ..+|||||+|+|.||+.|+++|+++|++|++..
T Consensus       307 G~p~~~~-~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~  346 (369)
T PRK14288        307 GVKHPES-SYRGSLIVELQVIYPKSLNKEQQELLEKLHASF  346 (369)
T ss_pred             CCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            9997653 458999999999999999999999999999753

>PRK14277 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.1e-78  Score=624.65  Aligned_cols=351  Identities=42%  Similarity=0.823  Sum_probs=309.3

Q ss_pred             cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccc-cCC
Q 012301           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKST-VGG  152 (466)
Q Consensus        75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~-~~~  152 (466)
                      +..|||+||||+++||.+|||+|||+||++||||+|+. +.++++|++|++||+||+|+.+|++||+||+++++.+ .+.
T Consensus         3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~   82 (386)
T PRK14277          3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQ   82 (386)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccccccccc
Confidence            35799999999999999999999999999999999974 5788999999999999999999999999998877532 110


Q ss_pred             C--C-CCC-----C---CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeee
Q 012301          153 G--S-SAY-----T---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSH  221 (466)
Q Consensus       153 ~--~-~~~-----~---~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~  221 (466)
                      +  . +++     .   .++.++|++||+..+|+.+        ........++.|+.+.|.|+|+|+|+|+++++.+++
T Consensus        83 ~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~~--------~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r  154 (386)
T PRK14277         83 GGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGR--------RRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVER  154 (386)
T ss_pred             CCcCCCCccccCccccccchhHHHHHhhcccccCCC--------cCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEe
Confidence            0  0 111     1   1122567777764332210        000112347899999999999999999999999999


Q ss_pred             eeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEc
Q 012301          222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKV  301 (466)
Q Consensus       222 ~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~I  301 (466)
                      .+.|+.|+|+|........+|+.|+|+|.++..+++++|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.|
T Consensus       155 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I  234 (386)
T PRK14277        155 FEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNI  234 (386)
T ss_pred             eccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEec
Confidence            99999999999988888899999999999999899999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCC
Q 012301          302 PPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPG  381 (466)
Q Consensus       302 p~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g  381 (466)
                      |+|+++|++|+|+|+|++.+.++.+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+||||+++|+||++
T Consensus       235 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g  314 (386)
T PRK14277        235 PAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEG  314 (386)
T ss_pred             CCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCC
Confidence            99999999999999999976667789999999999999999999999999999999999999999999999988999999


Q ss_pred             CccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301          382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR  434 (466)
Q Consensus       382 ~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~  434 (466)
                      +++|++++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+++.
T Consensus       315 ~~~g~~~ri~g~G~p~~~~-~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~~~  366 (386)
T PRK14277        315 TQTGTKFRLRGKGIPHLRG-RGRGDQIVKVYIEVPKKLTEKQKELLREFEKLS  366 (386)
T ss_pred             CCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhhc
Confidence            9999999999999998664 368999999999999999999999999999754

>PRK14298 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.8e-78  Score=620.07  Aligned_cols=346  Identities=45%  Similarity=0.808  Sum_probs=308.8

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCC--
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG--  153 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~--  153 (466)
                      .+|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||+++++.+.++.  
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~   83 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDI   83 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccc
Confidence            469999999999999999999999999999999998778899999999999999999999999999988765321110  


Q ss_pred             --CCCCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCc
Q 012301          154 --SSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT  231 (466)
Q Consensus       154 --~~~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~Gt  231 (466)
                        ..++ .++.|+|+.||+++  +  +     ..   ...+.++.|+.+.|.|+|+|+|+|+++++.+.+.+.|+.|+|+
T Consensus        84 ~~~~~~-~~~~d~f~~~Fgg~--~--~-----~~---~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~  150 (377)
T PRK14298         84 FRGADF-GGFGDIFEMFFGGG--G--R-----RG---RMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGT  150 (377)
T ss_pred             cccCCc-CcchhhhHhhhcCC--C--c-----cC---CCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCC
Confidence              0011 12336677777521  0  0     00   1123578999999999999999999999999999999999999


Q ss_pred             ccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEE
Q 012301          232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL  311 (466)
Q Consensus       232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i  311 (466)
                      |...+....+|+.|+|+|.++..+++++|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|+++|++|
T Consensus       151 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i  230 (377)
T PRK14298        151 GAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRL  230 (377)
T ss_pred             cccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEE
Confidence            99988888999999999999988888888888889999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEc
Q 012301          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLA  391 (466)
Q Consensus       312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~  391 (466)
                      +|+|+|++.+.++.+|||||+|.+++|+.|+|+|+||++++.|+|.|||+|+++.|+||||++.|+||+++++|++++|+
T Consensus       231 ~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~lri~  310 (377)
T PRK14298        231 KLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHSVFRLK  310 (377)
T ss_pred             EEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCCEEEEC
Confidence            99999999776788999999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             cCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcC
Q 012301          392 KKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN  435 (466)
Q Consensus       392 g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~~  435 (466)
                      |+|||..+. ..+|||||+|+|.||+.|+++++++|++|+++.+
T Consensus       311 g~G~p~~~~-~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~~~~~  353 (377)
T PRK14298        311 DKGMPRLHG-HGKGDQLVKVIVKTPTKLTQEQKELLREFDELSN  353 (377)
T ss_pred             CCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence            999997654 3689999999999999999999999999997643

>PRK14287 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4e-78  Score=619.16  Aligned_cols=346  Identities=44%  Similarity=0.845  Sum_probs=309.5

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCC-CC
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-GS  154 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~-~~  154 (466)
                      ..|||+||||+++||.+|||+|||+||++||||+|++++++++|++|++||++|+||.+|++||+||++++..+.++ +.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~   82 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGA   82 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCC
Confidence            36999999999999999999999999999999999877889999999999999999999999999999876532211 11


Q ss_pred             CCCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccc
Q 012301          155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK  234 (466)
Q Consensus       155 ~~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~  234 (466)
                      ++| .++.|+|+.||+++  +  +.     +.  .....++.|+.+.|.|+|+|+|+|+++++.+.+.+.|+.|+|+|..
T Consensus        83 ~~f-~~~~d~f~~~fgg~--~--~~-----~~--~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~  150 (371)
T PRK14287         83 GDF-GGFSDIFDMFFGGG--G--GR-----RN--PNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAK  150 (371)
T ss_pred             ccc-cchHHHHHhhhccc--c--CC-----CC--CCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccC
Confidence            112 12336778887631  1  00     00  0113478999999999999999999999999999999999999998


Q ss_pred             cCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEc
Q 012301          235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV  314 (466)
Q Consensus       235 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~  314 (466)
                      ......+|+.|+|+|.+...+++++|++++..+|+.|.|+|+++.+.|..|.|.|.+.+.++++|.||+|+++|++|+|+
T Consensus       151 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~  230 (371)
T PRK14287        151 PGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVS  230 (371)
T ss_pred             CCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEc
Confidence            88878899999999999988899999999989999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEccCC
Q 012301          315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKG  394 (466)
Q Consensus       315 g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~g~G  394 (466)
                      |+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+|+||+++|+||+++++|++++|+|+|
T Consensus       231 G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G  310 (371)
T PRK14287        231 GQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGKG  310 (371)
T ss_pred             cCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCcEEEEcCCC
Confidence            99999876678899999999999999999999999999999999999999999999999899999999999999999999


Q ss_pred             CCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301          395 APKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR  434 (466)
Q Consensus       395 mP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~  434 (466)
                      ||..++ ..+|||||+|+|.+|+.|+.+|+++|++|+++.
T Consensus       311 ~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~  349 (371)
T PRK14287        311 VPNVHG-RGQGDQHVQVRVVTPKNLTEKEKELMREFAGMS  349 (371)
T ss_pred             ccCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence            997664 358999999999999999999999999999764

>PRK14280 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.5e-78  Score=619.54  Aligned_cols=346  Identities=46%  Similarity=0.861  Sum_probs=309.2

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCC--
Q 012301           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS--  154 (466)
Q Consensus        77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~--  154 (466)
                      .|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||+++++.+.+++.  
T Consensus         4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~   83 (376)
T PRK14280          4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGFG   83 (376)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCCC
Confidence            699999999999999999999999999999999988889999999999999999999999999999987754321110  


Q ss_pred             -CCCC--CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCc
Q 012301          155 -SAYT--TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT  231 (466)
Q Consensus       155 -~~~~--~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~Gt  231 (466)
                       ..|.  .++.|+|+.||+++  +  .      .. ......++.|+.+.|.|+|+|+|+|+++++.+.+.+.|+.|+|+
T Consensus        84 ~~~~~~~~~~~d~f~~~fgg~--~--~------~~-~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~  152 (376)
T PRK14280         84 GGDFGGGFGFEDIFSSFFGGG--G--R------RR-DPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGS  152 (376)
T ss_pred             CCCccccccchhhHHHHhCCc--c--c------cC-cccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCc
Confidence             0111  13346777777521  1  0      00 01123478999999999999999999999999999999999999


Q ss_pred             ccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEE
Q 012301          232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL  311 (466)
Q Consensus       232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i  311 (466)
                      |........+|+.|+|+|.+....++++|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|+++|++|
T Consensus       153 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i  232 (376)
T PRK14280        153 GAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQI  232 (376)
T ss_pred             ccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEE
Confidence            99888888999999999999888889999999889999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEc
Q 012301          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLA  391 (466)
Q Consensus       312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~  391 (466)
                      +|+|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+||||++.|+||+++++|++++|+
T Consensus       233 ~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~~~~i~  312 (376)
T PRK14280        233 RVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGTQFRLK  312 (376)
T ss_pred             EEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCcEEEEc
Confidence            99999999876778899999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             cCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301          392 KKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR  434 (466)
Q Consensus       392 g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~  434 (466)
                      |+|||..++ ..+|||||+|+|.||+.|+++|+++|++|+++.
T Consensus       313 g~G~p~~~~-~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~~~  354 (376)
T PRK14280        313 GKGVPNVRG-YGQGDQYVVVRVVTPTKLTDRQKELLREFAELS  354 (376)
T ss_pred             CCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            999998654 368999999999999999999999999999754

>PRK14276 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.7e-78  Score=620.86  Aligned_cols=347  Identities=44%  Similarity=0.808  Sum_probs=309.8

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCC---
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG---  152 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~---  152 (466)
                      ..|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||+++++.+.++   
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~   82 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG   82 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence            46999999999999999999999999999999999888899999999999999999999999999999887642211   


Q ss_pred             CCCCCC-----CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeeccc
Q 012301          153 GSSAYT-----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV  227 (466)
Q Consensus       153 ~~~~~~-----~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~  227 (466)
                      +.++|.     .++.|+|+.||+++  +  +.     .  ......++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.
T Consensus        83 ~~~~~~~~~~~~~~~d~f~~~fgg~--~--~~-----~--~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~  151 (380)
T PRK14276         83 GFGGFDGSGGFGGFEDIFSSFFGGG--G--AR-----R--NPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHT  151 (380)
T ss_pred             CCCCccccccccchhhHHHHHhCcc--c--cc-----c--CcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCC
Confidence            111121     12336677777521  1  00     0  0112347899999999999999999999999999999999


Q ss_pred             ccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcC
Q 012301          228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST  307 (466)
Q Consensus       228 C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~  307 (466)
                      |+|+|........+|+.|+|+|.+....++++|++++..+|+.|+|.|+++.+.|..|.|.|.+.+.++++|.||+|+++
T Consensus       152 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~  231 (380)
T PRK14276        152 CNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVET  231 (380)
T ss_pred             CcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccC
Confidence            99999998888889999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcE
Q 012301          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDV  387 (466)
Q Consensus       308 G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~  387 (466)
                      |++|+|+|+|++.+.+..+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|++++|+|+||+++|+||+++++|++
T Consensus       232 G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~~  311 (380)
T PRK14276        232 GQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGKK  311 (380)
T ss_pred             CcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCCE
Confidence            99999999999987667789999999999999999999999999999999999999999999999989999999999999


Q ss_pred             EEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301          388 LVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR  434 (466)
Q Consensus       388 ~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~  434 (466)
                      ++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|++..
T Consensus       312 ~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~~~  357 (380)
T PRK14276        312 FRLRGKGAPKLRG-GGNGDQHVTVNIVTPTKLNDAQKEALKAFAKAS  357 (380)
T ss_pred             EEECCCCcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            9999999998654 357999999999999999999999999999753

>PRK14286 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.4e-78  Score=616.59  Aligned_cols=348  Identities=45%  Similarity=0.828  Sum_probs=303.9

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCC-C
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-G  153 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~-~  153 (466)
                      ..|||+||||+++||.+|||+|||+||++||||+|+. ++++++|++|++||+||+||.+|++||+||+++++.+.++ +
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~   82 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG   82 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence            3699999999999999999999999999999999974 6788999999999999999999999999999877532111 1


Q ss_pred             CCC---CC---CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeeccc
Q 012301          154 SSA---YT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV  227 (466)
Q Consensus       154 ~~~---~~---~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~  227 (466)
                      .++   +.   .++.|+|+.||+++.++.+     ..+  +.....++.|+++.|.|+|+|+|+|+++++.+.+.+.|++
T Consensus        83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~-----~~~--~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~  155 (372)
T PRK14286         83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGGS-----GGG--RRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVD  155 (372)
T ss_pred             CCCcccccccccchhhHHHHhhCCCccCCC-----ccc--ccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCC
Confidence            111   11   2333678888863211100     000  1112357899999999999999999999999999999999


Q ss_pred             ccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcC
Q 012301          228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST  307 (466)
Q Consensus       228 C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~  307 (466)
                      |+|+|........+|+.|+|+|.++...    |++++.++|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|+++
T Consensus       156 C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~  231 (372)
T PRK14286        156 CNGSGASKGSSPTTCPDCGGSGQIRRTQ----GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVET  231 (372)
T ss_pred             CcCCCcCCCCCCccCCCCcCeEEEEEEe----ceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCC
Confidence            9999998887788999999999886643    778877999999999999999999999999999999999999999999


Q ss_pred             CcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCCCccCc
Q 012301          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGD  386 (466)
Q Consensus       308 G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g~~~g~  386 (466)
                      |++|+|+|+|++.+++..+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+||||+ ++|+||+++++|+
T Consensus       232 G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~  311 (372)
T PRK14286        232 GSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQ  311 (372)
T ss_pred             CCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCc
Confidence            999999999999877677899999999999999999999999999999999999999999999997 6899999999999


Q ss_pred             EEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcC
Q 012301          387 VLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN  435 (466)
Q Consensus       387 ~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~~  435 (466)
                      +++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+++..
T Consensus       312 ~~ri~G~G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~~~  359 (372)
T PRK14286        312 VFRLKGHGMPYLGA-YGKGDQHVIVKIEIPKKITRRQRELIEEFARESG  359 (372)
T ss_pred             EEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence            99999999998654 3689999999999999999999999999998643

>PRK14278 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.6e-77  Score=616.18  Aligned_cols=347  Identities=43%  Similarity=0.755  Sum_probs=306.3

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCccccc-CCCC
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV-GGGS  154 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~-~~~~  154 (466)
                      ..|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||++....+. +++.
T Consensus         2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~   81 (378)
T PRK14278          2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGF   81 (378)
T ss_pred             CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCC
Confidence            479999999999999999999999999999999998777899999999999999999999999999976332110 0010


Q ss_pred             C-CCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCccc
Q 012301          155 S-AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGA  233 (466)
Q Consensus       155 ~-~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~  233 (466)
                      + +| .++.|+|+.||+++  +. +       ........++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|.
T Consensus        82 ~~~f-~~~~d~f~~ffgg~--g~-~-------~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~  150 (378)
T PRK14278         82 GGGF-GGLGDVFEAFFGGG--AA-S-------RGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGT  150 (378)
T ss_pred             CcCc-CchhHHHHHHhCCC--CC-C-------CCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccC
Confidence            1 11 12346788887631  10 0       000112357899999999999999999999999999999999999999


Q ss_pred             ccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEE
Q 012301          234 KMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV  313 (466)
Q Consensus       234 ~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l  313 (466)
                      .......+|+.|+|+|.+...+++.+|++++.++|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||||+++|++|+|
T Consensus       151 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~  230 (378)
T PRK14278        151 AGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRL  230 (378)
T ss_pred             CCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEE
Confidence            98888899999999999988888889999988999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEecc-CCeEEEEeCCCCccCcEEEEcc
Q 012301          314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTV-EGISELQVPPGTQPGDVLVLAK  392 (466)
Q Consensus       314 ~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tl-dG~~~v~i~~g~~~g~~~~i~g  392 (466)
                      +|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+|| ++.+.|+||+++++|++++|+|
T Consensus       231 ~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g  310 (378)
T PRK14278        231 AAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLRG  310 (378)
T ss_pred             ccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEEECC
Confidence            999999887778899999999999999999999999999999999999999999999 5567899999999999999999


Q ss_pred             CCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301          393 KGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR  434 (466)
Q Consensus       393 ~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~  434 (466)
                      +|||..+. ..+|||||+|+|.||+.|+++|+++|++|+.+.
T Consensus       311 ~G~p~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~~~~  351 (378)
T PRK14278        311 RGMPHLRS-GGRGDLHAHVEVVVPTRLDHEDIELLRELKALR  351 (378)
T ss_pred             CCCCCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Confidence            99997653 468999999999999999999999999999763

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=100.00  E-value=1.1e-77  Score=621.51  Aligned_cols=334  Identities=33%  Similarity=0.611  Sum_probs=296.2

Q ss_pred             cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCC
Q 012301           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS  154 (466)
Q Consensus        75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~  154 (466)
                      ...|||+||||+++||.+|||+|||+||++||||+|++   .++|++|++||+||+||.+|++||+||++++..+.    
T Consensus        26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~----   98 (421)
T PTZ00037         26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE----   98 (421)
T ss_pred             cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC----
Confidence            35799999999999999999999999999999999853   58999999999999999999999999988765221    


Q ss_pred             CCCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccc
Q 012301          155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK  234 (466)
Q Consensus       155 ~~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~  234 (466)
                      +  ..++.++|+.||+++  +         +   +....++.|+.+.|.|+|+|+|+|+++++.+.+.+.|+.|+|+|..
T Consensus        99 ~--~~d~~d~f~~~Fggg--~---------~---~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~  162 (421)
T PTZ00037         99 Q--PADASDLFDLIFGGG--R---------K---PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGP  162 (421)
T ss_pred             C--CcchhhhHHHhhccc--c---------c---cccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCC
Confidence            1  124567788888631  0         0   0113468999999999999999999999999999999999999986


Q ss_pred             cCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEe--eeeeeccCceEEEeeeEEEEEcCCCCcCCcEEE
Q 012301          235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR  312 (466)
Q Consensus       235 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~--~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~  312 (466)
                      .. ...+|+.|+|+|.++...++++.++++..+|+.|+|+|+++.  +.|..|+|.|++.+.++++|.||+|+.+|++|+
T Consensus       163 ~~-~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~  241 (421)
T PTZ00037        163 KD-AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKIT  241 (421)
T ss_pred             CC-CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEE
Confidence            44 568999999999988777665523345589999999999986  799999999999999999999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCC--CccCcEEE
Q 012301          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLV  389 (466)
Q Consensus       313 l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g--~~~g~~~~  389 (466)
                      |+|+|++.+ ++.+|||||+|.+++|+.|+|+|+||++++.|+|.|||+|+++.|+||||+ ++|+||++  ++||++++
T Consensus       242 ~~G~Gd~~~-~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~  320 (421)
T PTZ00037        242 FHGEADEKP-NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKV  320 (421)
T ss_pred             EecccCCCC-CCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEE
Confidence            999999976 578999999999999999999999999999999999999999999999997 68999988  99999999


Q ss_pred             EccCCCCCCCCCCCCCcEEEEEEEECC--CCCCHHHHHHHHHHHhh
Q 012301          390 LAKKGAPKLNKPSIRGDHLFTVKVTIP--NRISAKERELLEELASL  433 (466)
Q Consensus       390 i~g~GmP~~~~~~~~GDL~I~~~V~~P--~~ls~~~~~ll~~l~~~  433 (466)
                      |+|+|||..++++.+|||||+|+|.||  +.|+++|+++|++|+..
T Consensus       321 I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~  366 (421)
T PTZ00037        321 INNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQ  366 (421)
T ss_pred             eCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccC
Confidence            999999987765679999999999999  99999999999999964

>PRK14297 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.3e-77  Score=616.11  Aligned_cols=350  Identities=44%  Similarity=0.827  Sum_probs=310.0

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccC---
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG---  151 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~---  151 (466)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||+||+||.+|++||+||+++++.+.+   
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~   82 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS   82 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence            3699999999999999999999999999999999974 568899999999999999999999999999987753211   


Q ss_pred             CCCCCCC----CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeeccc
Q 012301          152 GGSSAYT----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV  227 (466)
Q Consensus       152 ~~~~~~~----~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~  227 (466)
                      ++.+++.    .++.|+|++||++++++.        +. +.....++.|+++.|.|||+|+|+|+++++.+.+.+.|+.
T Consensus        83 ~~~~~~~~~~~~~~~d~f~~~fgg~~g~~--------~~-~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~  153 (380)
T PRK14297         83 GGFGGFDFSDMGGFGDIFDSFFGGGFGSS--------SR-RRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCET  153 (380)
T ss_pred             CCCCCcCcccccchhHHHHHHhccCcccc--------cc-ccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCC
Confidence            0111111    123467888886321110        00 1112357899999999999999999999999999999999


Q ss_pred             ccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcC
Q 012301          228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST  307 (466)
Q Consensus       228 C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~  307 (466)
                      |+|+|...+....+|+.|+|+|.++..+++++|++++..+|+.|+|+|.++.+.|..|+|.|.+.+.++++|.||+|+++
T Consensus       154 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~  233 (380)
T PRK14297        154 CNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDT  233 (380)
T ss_pred             cccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCC
Confidence            99999998888899999999999998888999999988999999999999999999999999999999999999999999


Q ss_pred             CcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcE
Q 012301          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDV  387 (466)
Q Consensus       308 G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~  387 (466)
                      |++|+|+|+|++.+.+..+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|++++|+|+||+++|+||+++++|++
T Consensus       234 G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~~  313 (380)
T PRK14297        234 GNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGTV  313 (380)
T ss_pred             CcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCCE
Confidence            99999999999977677889999999999999999999999999999999999999999999999989999999999999


Q ss_pred             EEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcC
Q 012301          388 LVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN  435 (466)
Q Consensus       388 ~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~~  435 (466)
                      ++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+.+..
T Consensus       314 ~ri~g~G~p~~~~-~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~~  360 (380)
T PRK14297        314 FRLKGKGVPRVNS-TGRGNQYVTVIVDIPKKLNSKQKEALTMFMEASG  360 (380)
T ss_pred             EEEcCCCcCCCCC-CCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence            9999999997653 4689999999999999999999999999998753

>PRK14279 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.3e-77  Score=617.20  Aligned_cols=353  Identities=37%  Similarity=0.692  Sum_probs=297.3

Q ss_pred             cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccC--
Q 012301           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--  151 (466)
Q Consensus        75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~--  151 (466)
                      +.+|||+||||+++|+.+|||+|||+||++||||+|+ ++.+.++|++|++||+||+||++|++||+||+++...+..  
T Consensus         7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~   86 (392)
T PRK14279          7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGR   86 (392)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccc
Confidence            4579999999999999999999999999999999997 4578899999999999999999999999999753221110  


Q ss_pred             -----CCCCCCCCC----CcCccccccCCC----CCCC----CCCCCCCcccccccccccCCceeeeEeeecccccccee
Q 012301          152 -----GGSSAYTTN----PFDLFETFFGPS----MGGF----PGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAE  214 (466)
Q Consensus       152 -----~~~~~~~~~----~~d~f~~fFg~~----~gg~----~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~  214 (466)
                           ++.++|..+    .++ |++||+..    .++|    +++++.+.+..+.....++.|+.+.|.|+|+|+|+|++
T Consensus        87 ~~~~~~~~~g~~~~~~~~~~d-~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~  165 (392)
T PRK14279         87 RFDGGGGFGGFGTGGDGAEFN-LNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVT  165 (392)
T ss_pred             cccCCCCCCCccccccccCcC-hhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeE
Confidence                 000111100    111 23333211    0111    11110000001112235789999999999999999999


Q ss_pred             eeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEee
Q 012301          215 KEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLK  294 (466)
Q Consensus       215 ~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~  294 (466)
                      +++.+.+.+.|+.|+|+|........+|+.|+|+|.++...    |++++.++|+.|+|+|+++.+.|..|.|.|.+.+.
T Consensus       166 ~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~  241 (392)
T PRK14279        166 MPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRT  241 (392)
T ss_pred             EEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEe
Confidence            99999999999999999999888889999999999887643    66777799999999999999999999999999999


Q ss_pred             eEEEEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeE
Q 012301          295 KNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS  374 (466)
Q Consensus       295 ~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~  374 (466)
                      ++++|.||+|+++|++|+|+|+|++.+++..+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|++++|+|+||++
T Consensus       242 ~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i  321 (392)
T PRK14279        242 RTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPV  321 (392)
T ss_pred             eeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceE
Confidence            99999999999999999999999998877788999999999999999999999999999999999999999999999998


Q ss_pred             EEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301          375 ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR  434 (466)
Q Consensus       375 ~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~  434 (466)
                      +|+||+++++|++++|+|+|||..  .+.+|||||+|+|.||+.|+++|+++|++|+.+.
T Consensus       322 ~v~Ip~g~~~g~~iri~g~G~p~~--~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~~~~  379 (392)
T PRK14279        322 GVKVPAGTADGRILRVRGRGVPKR--SGGAGDLLVTVKVAVPPNLDGAAAEALEAYAEAE  379 (392)
T ss_pred             EEEECCCCCCCCEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            999999999999999999999963  3468999999999999999999999999999864

>PRK14281 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.9e-76  Score=611.70  Aligned_cols=356  Identities=42%  Similarity=0.759  Sum_probs=305.5

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccC-CC
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GG  153 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~-~~  153 (466)
                      ..|||+||||+++|+.+|||+|||+||++||||+++. +.++++|++|++||++|+|+.+|++||+||+++++.... ++
T Consensus         2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~   81 (397)
T PRK14281          2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG   81 (397)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence            4699999999999999999999999999999999974 567899999999999999999999999999987753211 01


Q ss_pred             CCCCC---C---CCcCccccccCCCCCC-------CCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeee
Q 012301          154 SSAYT---T---NPFDLFETFFGPSMGG-------FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELS  220 (466)
Q Consensus       154 ~~~~~---~---~~~d~f~~fFg~~~gg-------~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~  220 (466)
                      ..+|.   .   +.|..|++||+++.+.       |.++.+.+....+.....++.|+++.|.|+|+|+|+|+++++.++
T Consensus        82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~  161 (397)
T PRK14281         82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIK  161 (397)
T ss_pred             CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEE
Confidence            11111   1   2223345778642110       000000000000111224689999999999999999999999999


Q ss_pred             eeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEE
Q 012301          221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVK  300 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~  300 (466)
                      +.+.|+.|+|+|.... ...+|+.|+|.|.+....++.+|++++..+|+.|+|.|+++.+.|..|.|.|.+.+.++++|+
T Consensus       162 r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~  240 (397)
T PRK14281        162 KQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVT  240 (397)
T ss_pred             eeecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEe
Confidence            9999999999999876 578999999999998888899999998899999999999999999999999999999999999


Q ss_pred             cCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCC
Q 012301          301 VPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPP  380 (466)
Q Consensus       301 Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~  380 (466)
                      ||+|+++|++|+|+|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+||||++.|+||+
T Consensus       241 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~  320 (397)
T PRK14281        241 VPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPA  320 (397)
T ss_pred             cCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCC
Confidence            99999999999999999998777789999999999999999999999999999999999999999999999998899999


Q ss_pred             CCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhh
Q 012301          381 GTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL  433 (466)
Q Consensus       381 g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~  433 (466)
                      ++++|++++|+|+|||..+. +.+|||||+|+|.||+.|+++|+++|++|++.
T Consensus       321 g~~~G~~~ri~g~G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~  372 (397)
T PRK14281        321 GTQPETMLRIPGKGIGHLRG-SGRGDQYVRVNVFVPKEVSHQDKELLKELKKS  372 (397)
T ss_pred             ccCCCcEEEEcCCCCCCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            99999999999999997654 46899999999999999999999999999975

>PRK14282 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.4e-76  Score=603.72  Aligned_cols=349  Identities=44%  Similarity=0.807  Sum_probs=305.7

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccC--
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--  151 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~--  151 (466)
                      ..|||+||||+++||.+|||+|||+||++||||+|+.  +.++++|++|++||+||+||.+|++||+||.+++.....  
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~   82 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET   82 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence            4699999999999999999999999999999999874  467899999999999999999999999999877642110  


Q ss_pred             CCCCCCCCC-------Cc--CccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeee
Q 012301          152 GGSSAYTTN-------PF--DLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL  222 (466)
Q Consensus       152 ~~~~~~~~~-------~~--d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~  222 (466)
                      ++.+++..+       +|  |+|+.||+++    ++.      ...+....++.|+.+.|.|||+|+|+|+++++.+++.
T Consensus        83 ~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~----~~~------~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~  152 (369)
T PRK14282         83 ESGGGFFEDIFKDFENIFNRDIFDIFFGER----RTQ------EEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRY  152 (369)
T ss_pred             CCCCcccccccccccccccchhhhHhhccc----CCc------ccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeec
Confidence            011111111       11  4455555421    000      0011123578999999999999999999999999999


Q ss_pred             eecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcC
Q 012301          223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP  302 (466)
Q Consensus       223 ~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip  302 (466)
                      +.|+.|+|+|........+|+.|+|+|.++..+++++|++++..+|+.|+|+|+++.+.|..|+|.|++.+.++++|.||
T Consensus       153 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip  232 (369)
T PRK14282        153 ETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIP  232 (369)
T ss_pred             ccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeC
Confidence            99999999999988888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCC
Q 012301          303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG  381 (466)
Q Consensus       303 ~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g  381 (466)
                      +|+.+|++|+|+|+|++.+.++.+|||||+|.+++|+.|+|+|+||++++.|+|.||++|++++|+|+||+ ++|+||++
T Consensus       233 ~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g  312 (369)
T PRK14282        233 AGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPG  312 (369)
T ss_pred             CCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCC
Confidence            99999999999999999877788999999999999999999999999999999999999999999999997 68999999


Q ss_pred             CccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcC
Q 012301          382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN  435 (466)
Q Consensus       382 ~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~~  435 (466)
                      +++|++++|+|+|||..+. +.+|||||+|+|.+|+.|+.+++++|++|+++..
T Consensus       313 ~~~g~~iri~GkG~p~~~~-~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~~~~  365 (369)
T PRK14282        313 TQPETVFRLKGKGLPNMRY-GRRGDLIVNVHVEIPKRLSREERKLLKELAKKRG  365 (369)
T ss_pred             cCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence            9999999999999997543 4689999999999999999999999999997643

>PRK14285 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.3e-76  Score=604.90  Aligned_cols=345  Identities=33%  Similarity=0.672  Sum_probs=302.3

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCC-C
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-G  153 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~-~  153 (466)
                      ..|||++|||+++||.+|||+|||+||++||||+|+. +.+.++|++|++||+||+|+.+|+.||+||++++..+.+. +
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~   81 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG   81 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence            4799999999999999999999999999999999974 5688999999999999999999999999998876532110 1


Q ss_pred             C-CCCC------CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecc
Q 012301          154 S-SAYT------TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCE  226 (466)
Q Consensus       154 ~-~~~~------~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~  226 (466)
                      . +++.      .++.|+|+.||++..    +    +.   +.....++.|+.+.|.|||+|+|+|+++++.+++.+.|.
T Consensus        82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~----~----~~---~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~  150 (365)
T PRK14285         82 FSGGFSGFSDIFEDFGDIFDSFFTGNR----G----QD---KNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCE  150 (365)
T ss_pred             cCCCccccccccccHHHHHHHhhcCCc----C----CC---CCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCC
Confidence            0 1111      122355666665210    0    00   011234789999999999999999999999999999999


Q ss_pred             cccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCc
Q 012301          227 VCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVS  306 (466)
Q Consensus       227 ~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~  306 (466)
                      .|+|+|...+.....|+.|+|+|.++.    .+|++++..+|+.|.|.|+++.+.|..|+|.|.+.+.++++|.||+|++
T Consensus       151 ~C~G~G~~~~~~~~~C~~C~G~G~~~~----~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~  226 (365)
T PRK14285        151 SCLGKKSEKGTSPSICNMCNGSGRVMQ----GGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGID  226 (365)
T ss_pred             CCCCcccCCCCCCccCCCccCceeEEe----cCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCC
Confidence            999999998888899999999998765    4588877799999999999999999999999999999999999999999


Q ss_pred             CCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCCCccC
Q 012301          307 TGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPG  385 (466)
Q Consensus       307 ~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g~~~g  385 (466)
                      +|++|+|+|+|++.++++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+||||+ ++|+||+++++|
T Consensus       227 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g  306 (365)
T PRK14285        227 DNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTEND  306 (365)
T ss_pred             CCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCC
Confidence            9999999999999887777899999999999999999999999999999999999999999999996 689999999999


Q ss_pred             cEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcCC
Q 012301          386 DVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRNT  436 (466)
Q Consensus       386 ~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~~~  436 (466)
                      ++++|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|+++.+.
T Consensus       307 ~~irl~GkG~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~~~  356 (365)
T PRK14285        307 EQIIIKNEGMPILHT-EKFGNLILIIKIKTPKNLNSNAIKLLENLSKELKD  356 (365)
T ss_pred             cEEEECCCCccCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            999999999997664 35799999999999999999999999999988764

>PRK14301 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.8e-76  Score=604.95  Aligned_cols=346  Identities=44%  Similarity=0.788  Sum_probs=300.9

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCC
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS  154 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~  154 (466)
                      ..|||+||||+++||.+|||+|||+||++||||+++. ++++++|++|++||+||+||.+|+.||+||+++++.+.  +.
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~--~~   80 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNG--GF   80 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCC--CC
Confidence            4699999999999999999999999999999999974 56788999999999999999999999999998775321  11


Q ss_pred             CCCC--CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcc
Q 012301          155 SAYT--TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTG  232 (466)
Q Consensus       155 ~~~~--~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG  232 (466)
                      ++|.  .++|+.|++||+..||+ ++.+    + .+.....++.|+.+.|.|+|+|+|+|+++++.+.+.+.|+.|+|+|
T Consensus        81 ~g~~~~~~~~~~f~d~f~~~fg~-g~~~----~-~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G  154 (373)
T PRK14301         81 GGFSSAEDIFSHFSDIFGDLFGF-SGGG----S-RRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSG  154 (373)
T ss_pred             CCcccccccccchHHHHHHHhhc-cCcc----c-ccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcc
Confidence            1221  12233334444432221 0100    0 0111235789999999999999999999999999999999999999


Q ss_pred             cccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEE
Q 012301          233 AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR  312 (466)
Q Consensus       233 ~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~  312 (466)
                      ........+|+.|+|+|.+...    .|++++..+|+.|+|+|+++.+.|..|+|.|++.+.++++|.||+|+++|++|+
T Consensus       155 ~~~~~~~~~C~~C~G~G~v~~~----~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~  230 (373)
T PRK14301        155 AAPGTSPETCRHCGGSGQVRQS----QGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLR  230 (373)
T ss_pred             cCCCCCCcccCCccCeeEEEEE----eeeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEE
Confidence            9988888899999999988653    377888899999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEcc
Q 012301          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAK  392 (466)
Q Consensus       313 l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~g  392 (466)
                      |+|+|++.+.++.+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|++++|+||||+++|+||+++++|++++|+|
T Consensus       231 ~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~ri~g  310 (373)
T PRK14301        231 LRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFRLRG  310 (373)
T ss_pred             EeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEEEcC
Confidence            99999998767789999999999999999999999999999999999999999999999998999999999999999999


Q ss_pred             CCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301          393 KGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR  434 (466)
Q Consensus       393 ~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~  434 (466)
                      +|||..+. ..+|||||+|+|.||+.|+++|+++|++|+.+.
T Consensus       311 ~G~p~~~~-~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~~~  351 (373)
T PRK14301        311 KGLPYLGS-SQKGDLLVEVSVVTPTKLTKRQEELLREFEALE  351 (373)
T ss_pred             CCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            99998654 468999999999999999999999999999764

>PRK14295 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.6e-75  Score=602.99  Aligned_cols=354  Identities=42%  Similarity=0.745  Sum_probs=299.0

Q ss_pred             cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhccccc----ccccCcccc
Q 012301           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQ----YGEAGVKST  149 (466)
Q Consensus        75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~----~g~~~~~~~  149 (466)
                      +..|||+||||+++||.+|||+|||+||++||||+|+. +.++++|++|++||+||+||.+|++||+    ||++++..+
T Consensus         7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~   86 (389)
T PRK14295          7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG   86 (389)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence            46799999999999999999999999999999999974 5688999999999999999999999999    998877532


Q ss_pred             cC-CCCCCCCCCCcCccccccCCC-CCCCC----CCCCCCccc-ccccccccCCceeeeEeeeccccccceeeeEeeeee
Q 012301          150 VG-GGSSAYTTNPFDLFETFFGPS-MGGFP----GMNQTGFRT-RRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL  222 (466)
Q Consensus       150 ~~-~~~~~~~~~~~d~f~~fFg~~-~gg~~----~~~~~~f~~-~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~  222 (466)
                      .+ ++.++|..++.++|..+++.+ +++++    .+++..|+. .+.....++.|+.+.|.|+|+|+|+|++++|.+.+.
T Consensus        87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~  166 (389)
T PRK14295         87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQ  166 (389)
T ss_pred             CCCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeecc
Confidence            11 111122223333443221100 00000    000000110 011123578999999999999999999999999999


Q ss_pred             eecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcC
Q 012301          223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP  302 (466)
Q Consensus       223 ~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip  302 (466)
                      +.|++|+|+|........+|+.|+|+|.++...    |+|++..+|+.|+|+|+++.+.|..|.|.|++.+.++++|.||
T Consensus       167 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip  242 (389)
T PRK14295        167 APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIP  242 (389)
T ss_pred             ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe----cceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeC
Confidence            999999999999888889999999999987643    5667778999999999999999999999999999999999999


Q ss_pred             CCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCC-eEEEEeCCC
Q 012301          303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPG  381 (466)
Q Consensus       303 ~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG-~~~v~i~~g  381 (466)
                      +|+++|++|+|+|+|++.+.+..+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|++++|+|+|| .++|+||++
T Consensus       243 ~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g  322 (389)
T PRK14295        243 AGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPG  322 (389)
T ss_pred             CCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCc
Confidence            9999999999999999977777889999999999999999999999999999999999999999999999 478999999


Q ss_pred             CccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301          382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR  434 (466)
Q Consensus       382 ~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~  434 (466)
                      +++|++++|+|+|||..+  +.+|||||+|+|.||+.|+++|+++|++|++..
T Consensus       323 ~~~g~~iri~G~G~p~~~--~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~~~  373 (389)
T PRK14295        323 TPNGRVLRVRGKGAVRKD--GTRGDLLVTVEVAVPKDLSGKAREALEAFREAT  373 (389)
T ss_pred             cCCCcEEEECCCCcCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            999999999999999743  468999999999999999999999999999754

>PRK14294 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.4e-75  Score=600.04  Aligned_cols=346  Identities=49%  Similarity=0.877  Sum_probs=302.6

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCC
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS  154 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~  154 (466)
                      ..|||+||||+++||.+|||+|||+||++||||+++. +.++++|++|++||+||+||.+|+.||+||+++++.+..++.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~   82 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGF   82 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCc
Confidence            4699999999999999999999999999999999974 578899999999999999999999999999988753211111


Q ss_pred             CCCC---CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCc
Q 012301          155 SAYT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT  231 (466)
Q Consensus       155 ~~~~---~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~Gt  231 (466)
                      +++.   .++.|+|++||+.  ++.++       ........++.|+.+.|.|+|+|+|+|+++++.+.+.+.|+.|+|+
T Consensus        83 ~~~~~~~~~~~d~f~~~fg~--g~~~~-------~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~  153 (366)
T PRK14294         83 SGFDDIFSSFGDIFEDFFGF--GGGRR-------GRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGS  153 (366)
T ss_pred             CccccchhhhhhhHHHhhcc--CCCcC-------CcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCc
Confidence            1221   1223566667651  11100       0001123578999999999999999999999999999999999999


Q ss_pred             ccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEE
Q 012301          232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL  311 (466)
Q Consensus       232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i  311 (466)
                      |........+|+.|+|+|.++..    .|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|+++|++|
T Consensus       154 G~~~~~~~~~C~~C~G~G~~~~~----~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i  229 (366)
T PRK14294        154 GCEPGTSPTTCPQCGGSGQVTQS----QGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRL  229 (366)
T ss_pred             cccCCCCcccCCCcCCeEEEEEE----eeeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEE
Confidence            99888888999999999988653    37787779999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEc
Q 012301          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLA  391 (466)
Q Consensus       312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~  391 (466)
                      +|+|+|++.+.++.+|||||+|.+++|+.|+|+|+||++++.|+|.|||+|++++|+||||+++|+||+++++|++++|+
T Consensus       230 ~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri~  309 (366)
T PRK14294        230 RLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFK  309 (366)
T ss_pred             EEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEEC
Confidence            99999999777788999999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             cCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcC
Q 012301          392 KKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN  435 (466)
Q Consensus       392 g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~~  435 (466)
                      |+|||..+. ..+|||||+|+|.+|+.|+.+|+++|++|+++++
T Consensus       310 G~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~~  352 (366)
T PRK14294        310 GKGIPSLRG-GGRGDQIIEVEVKVPTRLTKKQEELLTEFARLES  352 (366)
T ss_pred             CCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            999997654 3689999999999999999999999999998754

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=100.00  E-value=1.7e-75  Score=598.01  Aligned_cols=346  Identities=53%  Similarity=0.930  Sum_probs=307.5

Q ss_pred             ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCCCCC
Q 012301           78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAY  157 (466)
Q Consensus        78 ~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~  157 (466)
                      |||+||||+++|+.+|||+|||+||++||||+++++.+.++|++|++||++|+|+.+|++||+||++++..+.+.+.+.|
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~   80 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF   80 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence            79999999999999999999999999999999987778999999999999999999999999999887753211101111


Q ss_pred             ---C----CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccC
Q 012301          158 ---T----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG  230 (466)
Q Consensus       158 ---~----~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~G  230 (466)
                         .    .++.++|+.||++++++       +  ........++.|+.+.|.|+|+|+|+|+++++.+++.+.|+.|+|
T Consensus        81 ~~~~~~~~~~~~~~f~~~fg~~~g~-------~--~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G  151 (354)
T TIGR02349        81 NGFDIGFFGDFGDIFGDFFGGGGGS-------G--RRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHG  151 (354)
T ss_pred             CCccccCcCchhhhHHHHhccCccc-------C--ccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCC
Confidence               1    12335677777632110       0  000112357899999999999999999999999999999999999


Q ss_pred             cccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcE
Q 012301          231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI  310 (466)
Q Consensus       231 tG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~  310 (466)
                      +|........+|+.|+|+|.++...++++|++++.++|+.|.|+|+++.+.|..|.|.|.+.+.++++|.||+|+++|++
T Consensus       152 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~  231 (354)
T TIGR02349       152 TGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQR  231 (354)
T ss_pred             CCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCE
Confidence            99988877899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEE
Q 012301          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVL  390 (466)
Q Consensus       311 i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i  390 (466)
                      |+|+|+|++.+.+..+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+|+||.++|.||+++++|++++|
T Consensus       232 i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i  311 (354)
T TIGR02349       232 LRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGTVFRL  311 (354)
T ss_pred             EEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCcEEEE
Confidence            99999999976677889999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhh
Q 012301          391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL  433 (466)
Q Consensus       391 ~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~  433 (466)
                      +|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|++.
T Consensus       312 ~g~G~p~~~~-~~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~~  353 (354)
T TIGR02349       312 KGKGVPRLRG-NGRGDLLVTVKVETPKNLSKEQKELLEELAEA  353 (354)
T ss_pred             CCCCcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            9999997654 36899999999999999999999999999864

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14284 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.5e-75  Score=602.68  Aligned_cols=346  Identities=41%  Similarity=0.766  Sum_probs=298.0

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCC-CC
Q 012301           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-GS  154 (466)
Q Consensus        77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~-~~  154 (466)
                      .|||+||||+++||.+|||+|||+||++||||+|++ +.++++|++|++||+||+|+.+|++||+||++++..+.+. +.
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~   80 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG   80 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence            389999999999999999999999999999999974 5688999999999999999999999999998876322110 00


Q ss_pred             CCCC--CCC---------------cCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeE
Q 012301          155 SAYT--TNP---------------FDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEF  217 (466)
Q Consensus       155 ~~~~--~~~---------------~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v  217 (466)
                      +++.  .++               .|+|+.||++..++|++       ........++.|+.+.|.|||+|+|+|+++++
T Consensus        81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~-------~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i  153 (391)
T PRK14284         81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGM-------RGGPAGARQGASKKVHITLSFEEAAKGVEKEL  153 (391)
T ss_pred             CCcCcccchhhhccccccccccccccchhhhccCccccccc-------cccCCCcCCCCCeEEEEEEEHHHHhCCeeEEE
Confidence            1110  001               13444444321000100       00011234789999999999999999999999


Q ss_pred             eeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEE
Q 012301          218 ELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNI  297 (466)
Q Consensus       218 ~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l  297 (466)
                      .+.+.+.|+.|+|+|........+|+.|+|+|.++...    |++++..+|+.|+|+|+++.+.|..|.|.|++.+.+++
T Consensus       154 ~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l  229 (391)
T PRK14284        154 LVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSV  229 (391)
T ss_pred             EEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe----ceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEE
Confidence            99999999999999999888889999999999887543    77887899999999999999999999999999999999


Q ss_pred             EEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccC--CeEE
Q 012301          298 KVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVE--GISE  375 (466)
Q Consensus       298 ~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tld--G~~~  375 (466)
                      +|.||+|+.+|++|+|+|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+|+|  +.++
T Consensus       230 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~  309 (391)
T PRK14284        230 HVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCR  309 (391)
T ss_pred             EEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEE
Confidence            99999999999999999999998878889999999999999999999999999999999999999999999999  5678


Q ss_pred             EEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301          376 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR  434 (466)
Q Consensus       376 v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~  434 (466)
                      |+||+++++|++++|+|+|||..++ ..+|||||+|+|.+|+.|+++|+++|++|+++.
T Consensus       310 v~Ip~g~~~g~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~  367 (391)
T PRK14284        310 LTIPEGIQSGTILKVRGQGFPNVHG-KGRGDLLVRISVETPQNLSEEQKELLRQFAATE  367 (391)
T ss_pred             EEECCccCCCeEEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            9999999999999999999998654 368999999999999999999999999999764

>PRK14283 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.4e-74  Score=594.99  Aligned_cols=353  Identities=44%  Similarity=0.794  Sum_probs=304.2

Q ss_pred             cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCC
Q 012301           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS  154 (466)
Q Consensus        75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~  154 (466)
                      ...|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+|+.+|++||+||++++... .. .
T Consensus         3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~-~~-~   80 (378)
T PRK14283          3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGF-SQ-E   80 (378)
T ss_pred             CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccc-cc-c
Confidence            357999999999999999999999999999999999877899999999999999999999999999998876421 10 0


Q ss_pred             CCCC-CCCcCccccccCCCCCC-CCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcc
Q 012301          155 SAYT-TNPFDLFETFFGPSMGG-FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTG  232 (466)
Q Consensus       155 ~~~~-~~~~d~f~~fFg~~~gg-~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG  232 (466)
                      +.|. .++.++|..|++. ++. |..+   +|+........++.|+.++|.|+|+|+|+|+++++.+.+.+.|+.|+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~-~~~~f~~~---~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G  156 (378)
T PRK14283         81 DIFNNINFEDIFQGFGFG-IGNIFDMF---GFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSR  156 (378)
T ss_pred             ccccccCccccccccccc-hhhhcccc---ccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccc
Confidence            0011 1111222222210 000 0000   01100011134788999999999999999999999999999999999999


Q ss_pred             cccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEE
Q 012301          233 AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR  312 (466)
Q Consensus       233 ~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~  312 (466)
                      .........|+.|+|+|.+....++.+|++++..+|+.|.|.|+.+.+.|..|+|.|.+.+.++++|.||+|+++|++|+
T Consensus       157 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~  236 (378)
T PRK14283        157 AEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLR  236 (378)
T ss_pred             cCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEE
Confidence            98888888999999999999888999999998899999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEcc
Q 012301          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAK  392 (466)
Q Consensus       313 l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~g  392 (466)
                      |+|+|++.+.++.+|||||+|+|++|+.|+|+|+||++++.|+|.||++|++++|+|+||.+.|+||+++++|++++|+|
T Consensus       237 l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g  316 (378)
T PRK14283        237 VSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKG  316 (378)
T ss_pred             EeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCCEEEECC
Confidence            99999997766789999999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             CCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301          393 KGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR  434 (466)
Q Consensus       393 ~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~  434 (466)
                      +|||.... ..+|||||+|+|.||++|+++|+++|++|++..
T Consensus       317 ~G~p~~~~-~~~GdL~v~~~v~~P~~l~~~q~~ll~~~~~~~  357 (378)
T PRK14283        317 HGMPSLRW-SGKGNLYVKVKVVVPKKLSPKQKELLREFASIS  357 (378)
T ss_pred             CCCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhhc
Confidence            99997653 368999999999999999999999999999653

>PRK14293 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.3e-74  Score=594.56  Aligned_cols=354  Identities=57%  Similarity=0.997  Sum_probs=310.7

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCC-C
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG-S  154 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~-~  154 (466)
                      ..|||+||||+++||.+|||+|||+||++||||+++++.++++|++|++||+||+||.+|++||+||+++++.+.+.+ .
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~   81 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDM   81 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCc
Confidence            469999999999999999999999999999999998888999999999999999999999999999988765321100 0


Q ss_pred             CCCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccc
Q 012301          155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK  234 (466)
Q Consensus       155 ~~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~  234 (466)
                      ..+ .++.++|++||++. ++   +++.++. .+.....++.|+.+.|.|+|+|+|+|+++++.+++.+.|+.|+|+|..
T Consensus        82 ~~~-~~~~d~f~~~fg~~-~~---~~~~~~~-~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~  155 (374)
T PRK14293         82 GDM-GGFADIFETFFSGF-GG---AGGQGGR-RRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAK  155 (374)
T ss_pred             ccc-cchHHHHHHHhccc-CC---CCCCCcc-ccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCC
Confidence            111 11236778888631 11   1100000 011123468899999999999999999999999999999999999998


Q ss_pred             cCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEc
Q 012301          235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV  314 (466)
Q Consensus       235 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~  314 (466)
                      .......|+.|+|+|.+....++++|++++...|+.|.|.|+++.+.|..|.|.|++.+.++++|.||+|+++|++|+|+
T Consensus       156 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~  235 (374)
T PRK14293        156 PGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVS  235 (374)
T ss_pred             CCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEc
Confidence            88888899999999999888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEccCC
Q 012301          315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKG  394 (466)
Q Consensus       315 g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~g~G  394 (466)
                      |+|++...+..+|||||+|+|++|+.|+|+|+||+++++|+|.|||+|+++.|+|+||+++|+||+++++|++++|+|+|
T Consensus       236 g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~G  315 (374)
T PRK14293        236 GEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKG  315 (374)
T ss_pred             cCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCCEEEECCCC
Confidence            99998766677899999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             CCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcC
Q 012301          395 APKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN  435 (466)
Q Consensus       395 mP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~~  435 (466)
                      ||..++.+.+|||||+|+|.||+.|+++|+++|++|+++.+
T Consensus       316 ~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~~~~~  356 (374)
T PRK14293        316 VPRLGNPVARGDHLITVKVKIPTRISDEERELLEKLAKIKG  356 (374)
T ss_pred             CCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence            99876555789999999999999999999999999998754

>PRK14300 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.6e-74  Score=593.12  Aligned_cols=346  Identities=40%  Similarity=0.760  Sum_probs=302.7

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCccccc--C--
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV--G--  151 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~--~--  151 (466)
                      ..|||+||||+++||.+|||+|||+||++||||+++.+.++++|++|++||++|+|+.+|++||+||++++....  +  
T Consensus         2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~   81 (372)
T PRK14300          2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGG   81 (372)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCC
Confidence            469999999999999999999999999999999998777889999999999999999999999999988765321  1  


Q ss_pred             CCCCCCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCc
Q 012301          152 GGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT  231 (466)
Q Consensus       152 ~~~~~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~Gt  231 (466)
                      ++.+++..++.++|++||+..+|+.+.     +  .......++.|+.+.|.|+|+|+|+|+++++.+.+.+.|+.|+|+
T Consensus        82 g~~~~~~~~~~~~f~~~f~~~~gg~~~-----~--~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~  154 (372)
T PRK14300         82 GNHGGFHPDINDIFGDFFSDFMGGSRR-----S--RPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGS  154 (372)
T ss_pred             CCCCccccchhhhHHHHHHhhcCCCCC-----C--CCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCc
Confidence            111122223335677777643322100     0  000112468899999999999999999999999999999999999


Q ss_pred             ccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEE
Q 012301          232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL  311 (466)
Q Consensus       232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i  311 (466)
                      |........+|+.|+|+|.++..    +|++++..+|+.|+|.|+++.+.|..|+|.|++.+.++++|.||+|+++|++|
T Consensus       155 g~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i  230 (372)
T PRK14300        155 GSEKGETVTTCDACSGVGATRMQ----QGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRI  230 (372)
T ss_pred             ccCCCCCCccCCCccCeEEEEEe----eceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEE
Confidence            99988888999999999987653    37888779999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCC-eEEEEeCCCCccCcEEEE
Q 012301          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPGTQPGDVLVL  390 (466)
Q Consensus       312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG-~~~v~i~~g~~~g~~~~i  390 (466)
                      +++|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+|+|| .++|+||+++++|++++|
T Consensus       231 ~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri  310 (372)
T PRK14300        231 RHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRL  310 (372)
T ss_pred             EEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEE
Confidence            9999999977677899999999999999999999999999999999999999999999998 578999999999999999


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhh
Q 012301          391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL  433 (466)
Q Consensus       391 ~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~  433 (466)
                      +|+|||..++ ..+|||||+|+|.||+.|+++|+++|++|+++
T Consensus       311 ~g~G~p~~~~-~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~~  352 (372)
T PRK14300        311 RSKGMSKMRS-TIRGDMLTHIHVEVPKNLSKRQRELLEEFKKE  352 (372)
T ss_pred             CCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            9999997653 36899999999999999999999999999964

>PRK14291 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.2e-74  Score=593.96  Aligned_cols=357  Identities=41%  Similarity=0.760  Sum_probs=303.6

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCC--C
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG--G  153 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~--~  153 (466)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+++.+.++|++|++||+||+||.+|++||+||++++....+.  +
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~   81 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG   81 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence            57999999999999999999999999999999999888889999999999999999999999999998876532111  1


Q ss_pred             CCCCC----CCCcCccccccCCC-CCC-CCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeeccc
Q 012301          154 SSAYT----TNPFDLFETFFGPS-MGG-FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV  227 (466)
Q Consensus       154 ~~~~~----~~~~d~f~~fFg~~-~gg-~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~  227 (466)
                      ...|.    .++.++|.+||+.. +++ |++.+..+..........++.|+.+.|.|+|+|+|+|+++++.+.+.+.|..
T Consensus        82 ~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~  161 (382)
T PRK14291         82 QEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEA  161 (382)
T ss_pred             ccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCC
Confidence            11121    23335667765311 011 1111000000000112347899999999999999999999999999999999


Q ss_pred             ccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcC
Q 012301          228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST  307 (466)
Q Consensus       228 C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~  307 (466)
                      |+|+|........+|+.|+|+|.++..    .|++++..+|+.|+|.|. +.+.|..|+|.|++.+.++++|.||+|+.+
T Consensus       162 C~G~G~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~  236 (382)
T PRK14291        162 CGGTGYDPGSGEKVCPTCGGSGEIYQR----GGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVDN  236 (382)
T ss_pred             CccccCCCCCCCccCCCCCCceEEEEe----cceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCCC
Confidence            999999988888999999999988764    366777799999999995 688999999999999999999999999999


Q ss_pred             CcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCCCccCc
Q 012301          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGD  386 (466)
Q Consensus       308 G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g~~~g~  386 (466)
                      |++|+|+|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+|+||+ ++|+||+++++|+
T Consensus       237 G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~  316 (382)
T PRK14291        237 GSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGD  316 (382)
T ss_pred             CCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCC
Confidence            999999999999877788999999999999999999999999999999999999999999999997 6899999999999


Q ss_pred             EEEEccCCCCCCCCCCCCCcEEEEEEEECCC--CCC------HHHHHHHHHHHhhcCCCC
Q 012301          387 VLVLAKKGAPKLNKPSIRGDHLFTVKVTIPN--RIS------AKERELLEELASLRNTTG  438 (466)
Q Consensus       387 ~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~--~ls------~~~~~ll~~l~~~~~~~~  438 (466)
                      +++|+|+|||..+. ..+|||||+|+|.||+  .|+      ++|+++|++|.+++..++
T Consensus       317 ~i~i~G~G~p~~~~-~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~  375 (382)
T PRK14291        317 KIRVPGKGMPRLKG-SGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLLPEPE  375 (382)
T ss_pred             EEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhcCCcc
Confidence            99999999998654 3689999999999997  599      999999999998876555

>PRK10767 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.2e-74  Score=591.57  Aligned_cols=344  Identities=44%  Similarity=0.807  Sum_probs=299.5

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccC-CC
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GG  153 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~-~~  153 (466)
                      ..|||+||||+++||.+|||+|||+||++||||+|+. +.++++|++|++||++|+|+.+|+.||+||++++..+.+ ++
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~   82 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG   82 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCC
Confidence            4699999999999999999999999999999999973 568899999999999999999999999999887653211 11


Q ss_pred             CCCCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCccc
Q 012301          154 SSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGA  233 (466)
Q Consensus       154 ~~~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~  233 (466)
                      .+++ .++.++|++||+..||+.  .   +  . .+....++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|.
T Consensus        83 ~~~~-~~~~~~f~~~f~~~fgg~--~---~--~-~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~  153 (371)
T PRK10767         83 FGGG-GGFGDIFGDIFGDIFGGG--R---G--G-GRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGA  153 (371)
T ss_pred             CCCc-cccccchhhhhhhhccCC--c---c--c-cCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCccc
Confidence            1111 011134455554333221  0   0  0 0112357899999999999999999999999999999999999999


Q ss_pred             ccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEE
Q 012301          234 KMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV  313 (466)
Q Consensus       234 ~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l  313 (466)
                      ........|+.|+|+|.++...    |++++..+|+.|+|+|+++.+.|..|.|.|.+.+.++++|.||+|+++|++|+|
T Consensus       154 ~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~  229 (371)
T PRK10767        154 KPGTSPKTCPTCHGAGQVRMQQ----GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRL  229 (371)
T ss_pred             CCCCCCccCCCCCCeeEEEEee----ceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEE
Confidence            9888888999999999876543    777777899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEccC
Q 012301          314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKK  393 (466)
Q Consensus       314 ~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~g~  393 (466)
                      +|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+||||.++|+||+++++|++++|+|+
T Consensus       230 ~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~  309 (371)
T PRK10767        230 SGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRLRGK  309 (371)
T ss_pred             ecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEECCC
Confidence            99999977677899999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             CCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhh
Q 012301          394 GAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL  433 (466)
Q Consensus       394 GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~  433 (466)
                      |||..+. ..+|||||+|+|.||+.|+++|+++|++|++.
T Consensus       310 G~p~~~~-~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~~  348 (371)
T PRK10767        310 GVKSVRS-GARGDLYCQVVVETPVNLTKRQKELLEEFEES  348 (371)
T ss_pred             CcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            9997654 46899999999999999999999999999975

>PRK14289 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8.2e-74  Score=591.16  Aligned_cols=355  Identities=43%  Similarity=0.724  Sum_probs=307.0

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCC-C
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-G  153 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~-~  153 (466)
                      ..|||++|||+++|+.+|||+|||+||++||||+|+. +.+.++|++|++||++|+||.+|++||+||+++++.+.+. +
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~   83 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGG   83 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCC
Confidence            5799999999999999999999999999999999974 5788999999999999999999999999998876532111 1


Q ss_pred             CCCCCCCCcCcc---ccccCCCCCCCCCCCCCCccc-ccccccccCCceeeeEeeeccccccceeeeEeeeeeeeccccc
Q 012301          154 SSAYTTNPFDLF---ETFFGPSMGGFPGMNQTGFRT-RRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCT  229 (466)
Q Consensus       154 ~~~~~~~~~d~f---~~fFg~~~gg~~~~~~~~f~~-~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~  229 (466)
                      .++...++.++|   .++|+..++++++++  .++. .......++.|+++.|.|+|+|+|+|+++++.+++.+.|+.|+
T Consensus        84 ~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~--~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~  161 (386)
T PRK14289         84 FSGEGMSMEDIFSMFGDIFGGHGGGFGGFG--GFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCH  161 (386)
T ss_pred             CCCCCcChhhhhHHhhhhhcccccCccccc--ccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCC
Confidence            110011222333   333553322221110  0110 0111234688999999999999999999999999999999999


Q ss_pred             CcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCc
Q 012301          230 GTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGS  309 (466)
Q Consensus       230 GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~  309 (466)
                      |+|.........|+.|+|.|.++...++++|++++..+|+.|+|+|+++.+.|..|.|.|.+.+.++++|.||+|+++|+
T Consensus       162 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~  241 (386)
T PRK14289        162 GTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGM  241 (386)
T ss_pred             CCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCCC
Confidence            99999888889999999999999988999999998899999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEE
Q 012301          310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLV  389 (466)
Q Consensus       310 ~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~  389 (466)
                      +|+|+|+|++.+.+..+|||||+|++++|+.|+|+++||++++.|+|.|||+|+++.|+|+||+++|+||+++++|++++
T Consensus       242 ~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~r  321 (386)
T PRK14289        242 QLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGKVLR  321 (386)
T ss_pred             EEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCCcEEE
Confidence            99999999997767789999999999999999999999999999999999999999999999998999999999999999


Q ss_pred             EccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhh
Q 012301          390 LAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL  433 (466)
Q Consensus       390 i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~  433 (466)
                      |+|+|||..++ ..+|||||+|+|.||+.|+++|+++|++|++.
T Consensus       322 i~g~G~p~~~~-~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~~  364 (386)
T PRK14289        322 LRNKGLPSVNG-YGTGDLLVNVSVYIPETLSKEEKQTLEKMENS  364 (386)
T ss_pred             ECCCCcCCCCC-CCCCcEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence            99999997654 36899999999999999999999999999986

>PRK14290 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.6e-73  Score=580.62  Aligned_cols=351  Identities=37%  Similarity=0.689  Sum_probs=299.6

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhchhhhhcccccccccCcccccCC-
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-  152 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~-  152 (466)
                      ..|||+||||+++||.+|||+|||+||++||||+++..  .+.++|++|++||++|+|+.+|++||+||+.+++.+.++ 
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~   81 (365)
T PRK14290          2 AKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNF   81 (365)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCc
Confidence            36999999999999999999999999999999999753  688999999999999999999999999998876521100 


Q ss_pred             CCCCC--CCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccC
Q 012301          153 GSSAY--TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG  230 (466)
Q Consensus       153 ~~~~~--~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~G  230 (466)
                      +.+++  ..++.|+|..||++.+++ ..++  +.+. ......++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|
T Consensus        82 ~~~~~~~~~~~~d~f~~~fg~~~~~-~~~~--~~~~-~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G  157 (365)
T PRK14290         82 NWDNFTHFSDINDIFNQIFGGNFGS-DFFS--GFGN-QQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSG  157 (365)
T ss_pred             cccccccccchhHHHHHHhcCcccc-cccc--cccc-ccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCcc
Confidence            00111  124457788888742111 0000  0000 0111134789999999999999999999999999999999999


Q ss_pred             cccccCcceeecCCCCcccEEEEeeeCCccceee--eeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCC
Q 012301          231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQ--VSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTG  308 (466)
Q Consensus       231 tG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~--~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G  308 (466)
                      +|.... ...+|+.|+|.|.+....  .+|++.+  ..+|+.|.|.|+++.+.|..|+|.|.+.+.++++|.||+|+.+|
T Consensus       158 ~g~~~~-~~~~C~~C~G~G~~~~~~--~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G  234 (365)
T PRK14290        158 TGAKNG-KLITCPTCHGTGQQRIVR--GQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDN  234 (365)
T ss_pred             ccCCCC-CCccCCCCCCcCEEEEEe--ccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCC
Confidence            998775 578999999999877655  3566543  47999999999999999999999999999999999999999999


Q ss_pred             cEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEE
Q 012301          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVL  388 (466)
Q Consensus       309 ~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~  388 (466)
                      ++|+|+|+|+.  .++.+|||||+|++++|+.|+|+|+||++++.|+|.||++|++++|+|++|.++|+||+++++|+++
T Consensus       235 ~~i~~~g~G~~--~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~i  312 (365)
T PRK14290        235 LRLRVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVL  312 (365)
T ss_pred             cEEEEccccCC--CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEE
Confidence            99999999986  4778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcCC
Q 012301          389 VLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRNT  436 (466)
Q Consensus       389 ~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~~~  436 (466)
                      +|+|+|||..+. ..+|||||+|+|.+|+.|+++++++|++|+.+.++
T Consensus       313 ri~g~G~p~~~~-~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~~~~  359 (365)
T PRK14290        313 KIKGAGMPHLNG-HGSGDLLVRINVEVPKRLTSKQKELIREFFDIKEN  359 (365)
T ss_pred             EECCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhhhc
Confidence            999999997654 36899999999999999999999999999977654

>PRK14292 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.6e-72  Score=578.97  Aligned_cols=346  Identities=40%  Similarity=0.723  Sum_probs=303.4

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccC-CCCC
Q 012301           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GGSS  155 (466)
Q Consensus        77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~-~~~~  155 (466)
                      .|||+||||+++||.+|||+|||+||++||||+++++.+.++|++|++||++|+||.+|++||+||+++.....+ +..+
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~   81 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG   81 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence            489999999999999999999999999999999987788999999999999999999999999999876321101 1111


Q ss_pred             CCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCccccc
Q 012301          156 AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKM  235 (466)
Q Consensus       156 ~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~  235 (466)
                      ++..++.++|+.||++.  ++++    ++..   ....++.|+.+.+.|+|+|+|+|+++++.+++...|+.|+|+|...
T Consensus        82 ~~~~d~~d~f~~~fg~~--~~~~----~~~~---~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~  152 (371)
T PRK14292         82 GMGFDPMDIFEQLFGGA--GFGG----GRGR---RGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEP  152 (371)
T ss_pred             ccCCChHHHHHHhhCCC--CcCC----CCCc---ccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCC
Confidence            11224457788888742  1110    0000   1134789999999999999999999999999999999999999876


Q ss_pred             Ccc-eeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEc
Q 012301          236 GSK-MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV  314 (466)
Q Consensus       236 ~~~-~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~  314 (466)
                      ... ..+|+.|+|+|.+....++.+|++++..+|..|+|.|+.+...|..|.|.|++.+.++++|.||+|+.+|++|+|+
T Consensus       153 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~  232 (371)
T PRK14292        153 GGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVA  232 (371)
T ss_pred             CCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEe
Confidence            654 6889999999999887888889998889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEccCC
Q 012301          315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKG  394 (466)
Q Consensus       315 g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~g~G  394 (466)
                      |+|++.+.+ . |||||+|++++|+.|+|+|+||++.+.|+|.|||+|+++.|+||||+..|+||+++++|++++|+|+|
T Consensus       233 G~G~~~~~~-~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~G  310 (371)
T PRK14292        233 GMGNEGPGG-N-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQG  310 (371)
T ss_pred             cCcCCCCCC-C-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcEEEECCCC
Confidence            999997643 3 99999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             CCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301          395 APKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR  434 (466)
Q Consensus       395 mP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~  434 (466)
                      ||..++ ..+|||||+|+|.||+.|+++|+++|++|++..
T Consensus       311 ~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~  349 (371)
T PRK14292        311 MPRLQG-AGTGDLIVEYEIAVPKQLSPEAREALEAYARAV  349 (371)
T ss_pred             CCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            997654 357999999999999999999999999999654

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.5e-69  Score=529.72  Aligned_cols=329  Identities=41%  Similarity=0.742  Sum_probs=295.8

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCCC
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSS  155 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~  155 (466)
                      +..||+||||+++||.+|||+|||+||++||||+|++  +.++|++|.+||||||||++|++||+||++++..+.+++  
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~--   78 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGG--   78 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCC--
Confidence            5679999999999999999999999999999999965  889999999999999999999999999999986542221  


Q ss_pred             CCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCccccc
Q 012301          156 AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKM  235 (466)
Q Consensus       156 ~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~  235 (466)
                      ++    +. |++||+  +|+.++        +   +..++.|+.+.++|+|+|+|.|.++++.++++.+|+.|.|+|...
T Consensus        79 g~----~~-f~~~F~--~g~~~~--------~---~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgks  140 (337)
T KOG0712|consen   79 GF----GG-FSQFFG--FGGNGG--------R---GRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKS  140 (337)
T ss_pred             CC----cc-HHHhcc--CCCcCc--------c---ccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCC
Confidence            11    11 888887  222111        1   122389999999999999999999999999999999999999987


Q ss_pred             CcceeecCCCCcccEEEEeeeCCccceeee-eeCCCCCCccEE--EeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEE
Q 012301          236 GSKMRICSTCGGRGQVMRTDQTPFGLFSQV-SVCPSCGGEGEV--ISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR  312 (466)
Q Consensus       236 ~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~-~~C~~C~G~G~~--~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~  312 (466)
                      +... .|+.|.|+|..++..++.+|+.++. ..|..|+|.|.+  .++.|+.|.|.+.+.+.+.++|.|++|+.+++.|+
T Consensus       141 g~~~-~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~  219 (337)
T KOG0712|consen  141 GSAP-KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKIT  219 (337)
T ss_pred             CCCC-CCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceee
Confidence            7654 8999999999999999999998876 799999999998  56899999999999999999999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCC--CccCcEEE
Q 012301          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLV  389 (466)
Q Consensus       313 l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g--~~~g~~~~  389 (466)
                      +.|++++.+ +..+||+++.|..+.|+.|.|+++||++..+|+|.||++|+.+.+.|+||+ +++.++|+  +.||+.++
T Consensus       220 f~geadea~-g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~  298 (337)
T KOG0712|consen  220 FKGEADEAP-GTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKR  298 (337)
T ss_pred             eeeeeeecC-CCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEe
Confidence            999999876 566999999999999999999999999999999999999999999999998 57888887  79999999


Q ss_pred             EccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHH
Q 012301          390 LAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELA  431 (466)
Q Consensus       390 i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~  431 (466)
                      |+|+|||+.+++  +|||||+|+|+||+ +++++...|+.++
T Consensus       299 v~~~gmp~~~~~--~g~lyi~~~v~fp~-~~~~~~~~l~~~l  337 (337)
T KOG0712|consen  299 VEGEGMPIFRNP--KGDLYIKFEVKFPK-LSPSQLKMLEDLL  337 (337)
T ss_pred             ecCCCcccccCC--CCcEEEEEEEEcCC-CChHHHHHHHhhC
Confidence            999999999986  99999999999999 9999999998764

>PRK14299 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.7e-58  Score=456.85  Aligned_cols=276  Identities=43%  Similarity=0.740  Sum_probs=228.8

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccC----
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG----  151 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~----  151 (466)
                      ..|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||++|+||.+|+.||+||++++..+..    
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~   82 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP   82 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence            4799999999999999999999999999999999987789999999999999999999999999999875432110    


Q ss_pred             C--CCCCCC----CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeec
Q 012301          152 G--GSSAYT----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETC  225 (466)
Q Consensus       152 ~--~~~~~~----~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C  225 (466)
                      +  +...+.    .++.++|+.|||+. +++++++ ..+.. .....+++.|+.+.+.|+|+|+|.|+++++.+.     
T Consensus        83 ~~~~~~~~~~~~~~~~~d~f~~~fgg~-~~~~~~g-~~~~~-~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~-----  154 (291)
T PRK14299         83 GPPGGGDFSGFNVGDFSDFFQQLFGGR-GGFGGFG-DLFGS-VGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA-----  154 (291)
T ss_pred             CCCCCCCccccCcCCHHHHHHHHhCCC-CCCCCcc-ccccc-ccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC-----
Confidence            0  111121    12235677777631 1111110 00110 011235789999999999999999998887531     


Q ss_pred             ccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCC
Q 012301          226 EVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGV  305 (466)
Q Consensus       226 ~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~  305 (466)
                                                                                          .++++|+||+|+
T Consensus       155 --------------------------------------------------------------------g~~~~V~Ip~G~  166 (291)
T PRK14299        155 --------------------------------------------------------------------GERLSVRIPPGV  166 (291)
T ss_pred             --------------------------------------------------------------------CEEEEEecCCCc
Confidence                                                                                146789999999


Q ss_pred             cCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccC
Q 012301          306 STGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPG  385 (466)
Q Consensus       306 ~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g  385 (466)
                      ++|++|+++|+|++.      |||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+|+||+++|+||+++++|
T Consensus       167 ~~G~~ir~~g~G~~~------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~~~v~ip~~~~~g  240 (291)
T PRK14299        167 REGQVIRLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRTQAG  240 (291)
T ss_pred             CCCcEEEECCCCCCC------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCCEEEEeCCCcCCC
Confidence            999999999999962      99999999999999999999999999999999999999999999999899999999999


Q ss_pred             cEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcC
Q 012301          386 DVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN  435 (466)
Q Consensus       386 ~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~~  435 (466)
                      ++++|+|+|||..  .+.+|||||+|+|.||+.|+++|+++|++|+++.+
T Consensus       241 ~~~rl~g~G~p~~--~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~~~~  288 (291)
T PRK14299        241 RKLRLKGKGWPRG--PAGRGDQYAEVRITIPTRPTPEEERLYKQLAELYK  288 (291)
T ss_pred             CEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence            9999999999963  35689999999999999999999999999987644

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=100.00  E-value=1.7e-56  Score=448.89  Aligned_cols=285  Identities=31%  Similarity=0.559  Sum_probs=235.0

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhccccccccc----CcccccCC
Q 012301           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEA----GVKSTVGG  152 (466)
Q Consensus        77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~----~~~~~~~~  152 (466)
                      .|||++|||+++||.+|||+|||+||++||||+++++.+.++|++|++||++|+|+.+|+.||+||..    ++......
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~~   83 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQH   83 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCccccccccc
Confidence            69999999999999999999999999999999998778999999999999999999999999999854    22211010


Q ss_pred             -CCCCCC-CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccC
Q 012301          153 -GSSAYT-TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG  230 (466)
Q Consensus       153 -~~~~~~-~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~G  230 (466)
                       +...+. .++.++|+.||+..    ++     +..  .....++.|+.+.+.|+|+|+++|+.+++.+++..    |. 
T Consensus        84 ~~~~~~~~~~~~~~f~~~~g~~----~~-----~~~--~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~~-  147 (306)
T PRK10266         84 GDGQSFNAEDFDDIFSSIFGQH----AR-----QSR--QRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----YN-  147 (306)
T ss_pred             CCCCCCCCCCHHHHHHHHhCCC----CC-----CCC--CCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----cc-
Confidence             111121 23336677777531    11     000  11234688999999999999999999998876532    22 


Q ss_pred             cccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcE
Q 012301          231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI  310 (466)
Q Consensus       231 tG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~  310 (466)
                                      |.|.+..                                      ...++++|.||+|+++|++
T Consensus       148 ----------------g~G~~~~--------------------------------------~~~~~~~V~Ip~G~~~G~~  173 (306)
T PRK10266        148 ----------------AFGMIEQ--------------------------------------EIPKTLNVKIPAGVGNGQR  173 (306)
T ss_pred             ----------------CCCeEEE--------------------------------------eeeEEEEEEECCCCcCCcE
Confidence                            2221110                                      1135789999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEE
Q 012301          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVL  390 (466)
Q Consensus       311 i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i  390 (466)
                      |+++|+|++..++..+|||||+|+|++|+.|+|+|+||++++.|+|.+|++|+++.|+|++|+++|+||+++++|++++|
T Consensus       174 i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~v~v~ip~g~~~g~~~ri  253 (306)
T PRK10266        174 IRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRV  253 (306)
T ss_pred             EEEecCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCccEEEEeCCCcCCCCEEEE
Confidence            99999999987777899999999999999999999999999999999999999999999999989999999999999999


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301          391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR  434 (466)
Q Consensus       391 ~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~  434 (466)
                      +|+|||..+   .+|||||+|+|.+|+.|+++|+++|++|+++.
T Consensus       254 ~g~G~p~~~---~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~~~  294 (306)
T PRK10266        254 KGKGLVSKK---QTGDLYAVLKIVMPPKPDEKTAALWQQLADAQ  294 (306)
T ss_pred             CCCCCCCCC---CCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            999999643   58999999999999999999999999999764

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-41  Score=332.50  Aligned_cols=315  Identities=34%  Similarity=0.484  Sum_probs=237.1

Q ss_pred             ccccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCccccc
Q 012301           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV  150 (466)
Q Consensus        72 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~  150 (466)
                      .+...+|||+||||+++|+..|||+||||||++||||+|++ |.|.+.|++|+.||||||||++|+.||+||++++....
T Consensus        11 ~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~   90 (336)
T KOG0713|consen   11 AVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDEN   90 (336)
T ss_pred             hhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccc
Confidence            44567899999999999999999999999999999999985 88999999999999999999999999999999987532


Q ss_pred             CCCCCCCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccC
Q 012301          151 GGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG  230 (466)
Q Consensus       151 ~~~~~~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~G  230 (466)
                      ....++.  ...++|..||+.....+++-       .......+|.++...+..++++.|.|...+..-.+.+.|. |.|
T Consensus        91 ~~~~~g~--~~~~~f~~~f~dfg~~~~g~-------~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~-~~g  160 (336)
T KOG0713|consen   91 KDGEGGG--GGNDIFSAFFGDFGVTVGGN-------PLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKP-APG  160 (336)
T ss_pred             cccccCC--cccchHHHhhcccccccCCC-------cccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceee-cCc
Confidence            1010110  11456666766421111111       0111246789999999999999999987665544444432 111


Q ss_pred             cccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcE
Q 012301          231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI  310 (466)
Q Consensus       231 tG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~  310 (466)
                      +-           .|+-+= .+..++...|++++.            ....|.+|.+.+...+..++++.+..|...|..
T Consensus       161 ~~-----------~~~~~~-~~~~~~~~~g~~~~~------------q~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~  216 (336)
T KOG0713|consen  161 TR-----------KCNCRL-EMFTQQEGPGRFQML------------QEAVCDECPNVKLVLEEDPLEVEFERGDADGPE  216 (336)
T ss_pred             cc-----------ccCChh-hheeeccCCChhhhh------------hhhhhccCCccceeecCCceeeeeeecccCCce
Confidence            11           111111 111222233333321            123444445556667788999999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeE-EEEeCCCCccCcEEE
Q 012301          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS-ELQVPPGTQPGDVLV  389 (466)
Q Consensus       311 i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~-~v~i~~g~~~g~~~~  389 (466)
                      ..+..+|.+.. -+.+||+++.+..-+|+.|.|+++|+++.+.+++.+++.|+..++.++|+.. .+....++.|+..++
T Consensus       217 ~~~~~~~~~h~-~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~~  295 (336)
T KOG0713|consen  217 EIFELEGEPHI-DGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGARTR  295 (336)
T ss_pred             eeeeccCCcce-ecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccchhhh
Confidence            99999998865 5789999999999999999999999999999999999999999999999973 445556688999999


Q ss_pred             EccCCCCCCCCCCCCCcEEEEEEEECCCC-CCH
Q 012301          390 LAKKGAPKLNKPSIRGDHLFTVKVTIPNR-ISA  421 (466)
Q Consensus       390 i~g~GmP~~~~~~~~GDL~I~~~V~~P~~-ls~  421 (466)
                      .+++|||........|.++++|.+.+|.+ ++.
T Consensus       296 ~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~~~  328 (336)
T KOG0713|consen  296 KKGEGMPLLKNRNEKGNLYVTFDVEFPKSSLSD  328 (336)
T ss_pred             hhhccchhhhccchhcceeEEecccCcccccch
Confidence            99999998887788999999999999954 555

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-40  Score=329.02  Aligned_cols=245  Identities=44%  Similarity=0.836  Sum_probs=216.7

Q ss_pred             ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCCCCC
Q 012301           78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAY  157 (466)
Q Consensus        78 ~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~  157 (466)
                      |||+||||+++|+..|||+||++||++||||.|.++++.++|++|.+|||||+|+++|++||+++..+.        ..+
T Consensus        44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~--------~~~  115 (288)
T KOG0715|consen   44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQH--------GEF  115 (288)
T ss_pred             chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcc--------ccc
Confidence            999999999999999999999999999999999999999999999999999999999999999997651        122


Q ss_pred             CCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCc
Q 012301          158 TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGS  237 (466)
Q Consensus       158 ~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~  237 (466)
                      ..+++++|..+|+++      +          .....+.++++++.+.|+++..|.++.+.+.....|..|.|.|...+.
T Consensus       116 ~g~~~~~~~~~~~~~------~----------~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~  179 (288)
T KOG0715|consen  116 GGNPFDVFLEFFGGK------M----------NKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGA  179 (288)
T ss_pred             cCCccchHHHhhccc------c----------cccccCcccccccccCHHHHhhccccceEEEeecccccccCcCccccc
Confidence            337888898888741      1          012345678889999999999999999999999999999999999999


Q ss_pred             ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCC
Q 012301          238 KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG  317 (466)
Q Consensus       238 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G  317 (466)
                      ....|..|.|+|.+......++.+.    +|..|.|.|.+..+.|..|.|.|.+...+.+.|.+|+|+.++.+|++.+.|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~f~~~----~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~  255 (288)
T KOG0715|consen  180 KRESCKTCSGRGLVSNPKEDPFILY----TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHG  255 (288)
T ss_pred             ccccchhhhCcccccccccCCccee----ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCC
Confidence            9999999999997765444444322    899999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHh
Q 012301          318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLD  358 (466)
Q Consensus       318 ~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~e  358 (466)
                      ..        ||+|.+.|.+++.|+|+|.|++++..|++.|
T Consensus       256 ~~--------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~  288 (288)
T KOG0715|consen  256 ND--------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ  288 (288)
T ss_pred             cc--------eEEEEEEeccCcccccccCcccccccccccC
Confidence            63        9999999999999999999999999998754

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=100.00  E-value=4.4e-39  Score=340.97  Aligned_cols=124  Identities=17%  Similarity=0.189  Sum_probs=112.9

Q ss_pred             EEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEecc
Q 012301          291 IRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTV  370 (466)
Q Consensus       291 v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tl  370 (466)
                      +.+.++++|+||+|+++|++|+|+|+|+..+ ++ .|||||+|.+++|+.|+|+|+||++.+.|+|.+||+|+++.|+||
T Consensus       693 vkE~ktLeVkIPpGVkdGqkIRf~GeGDegp-gg-~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeIpTL  770 (871)
T TIGR03835       693 TNEAITLEIQLPITSQLNISAIFKGFGHDFG-NG-CGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFGP  770 (871)
T ss_pred             eeeeEEEEEecCCCCCCCCEEEeccccCCCC-CC-CCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEEeeCC
Confidence            4456789999999999999999999999864 33 499999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEE-CCCC
Q 012301          371 EGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVT-IPNR  418 (466)
Q Consensus       371 dG~~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~-~P~~  418 (466)
                      ||+++|+||+++++|+++||+|+|||..+  +.||||||+|+|. +++.
T Consensus       771 DGrVkLkIPpgTqpGqvLRIkGKGMP~~~--~~RGDLyV~f~V~~~~k~  817 (871)
T TIGR03835       771 NKLFNVRIPGGIKVNDQVIFKDLGLTKTK--YDKGSLIVHLYYSSVMKK  817 (871)
T ss_pred             CCCEEEeeCCCCCCCcEEEECCCCCCCCC--CCCCCEEEEEEEeecccc
Confidence            99988999999999999999999999543  4689999999997 5543

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=7.1e-21  Score=188.43  Aligned_cols=263  Identities=34%  Similarity=0.508  Sum_probs=179.4

Q ss_pred             cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhchhhhhcccccccccCcccccC-
Q 012301           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-  151 (466)
Q Consensus        75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~-  151 (466)
                      +..|||++|+|.++|+.+||++||+++|++||||+++.+  .+.++|++|.+||++|+|+.+|..||+||++++..... 
T Consensus         1 ~~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~   80 (306)
T KOG0714|consen    1 MGKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSF   80 (306)
T ss_pred             CcccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCC
Confidence            357999999999999999999999999999999998866  56668999999999999999999999999876654111 


Q ss_pred             -CC--CC---CCCCCCcCccccccCCCCC--CC----------------CC---CCCCCccc-c-------cccccccCC
Q 012301          152 -GG--SS---AYTTNPFDLFETFFGPSMG--GF----------------PG---MNQTGFRT-R-------RRSTVTKGE  196 (466)
Q Consensus       152 -~~--~~---~~~~~~~d~f~~fFg~~~g--g~----------------~~---~~~~~f~~-~-------~~~~~~~g~  196 (466)
                       ..  ..   ....++.++|.+|||....  ..                ..   ........ .       .........
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (306)
T KOG0714|consen   81 SSSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSP  160 (306)
T ss_pred             CCCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCC
Confidence             00  11   1123445667777762110  00                00   00000000 0       000000111


Q ss_pred             ceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccE
Q 012301          197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGE  276 (466)
Q Consensus       197 di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~  276 (466)
                      .+...+.+++++.+.|..+...+.+...                                         ....       
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~-------  192 (306)
T KOG0714|consen  161 PVEHPLRVSLEDLYKGESKKMKISRQSF-----------------------------------------TSNG-------  192 (306)
T ss_pred             CccCCcceeHHHhccccceeeecccccc-----------------------------------------cCCc-------
Confidence            1222233344555555444433322110                                         0000       


Q ss_pred             EEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEE--Eee
Q 012301          277 VISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST--ISI  354 (466)
Q Consensus       277 ~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~--~~I  354 (466)
                                 .........+.+.+.+++..|+.+....+|+..+. ..+-++++.+..++|..|.+.+.+|...  ..|
T Consensus       193 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~  260 (306)
T KOG0714|consen  193 -----------REGSSRSRYLSISIKPGWKEGTKITFPEEGDEEPG-ILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEI  260 (306)
T ss_pred             -----------ccccCccceeEEeccCCcccccceeccccccccCC-cCcceeEEEEecCCcccccCCCccceeccccee
Confidence                       00112345678999999999999999999987653 5678888889999999999999999999  999


Q ss_pred             CHHhhhCCCEEEEeccCCeE-EEEeC-CCCccCcEEEEccCCCCC
Q 012301          355 SYLDAIMGTVVKVKTVEGIS-ELQVP-PGTQPGDVLVLAKKGAPK  397 (466)
Q Consensus       355 sl~eAl~G~~~~i~tldG~~-~v~i~-~g~~~g~~~~i~g~GmP~  397 (466)
                      ++.+|++|....++++++.. .+.+. ..+.++...+++++|||.
T Consensus       261 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (306)
T KOG0714|consen  261 SLKEALLGVTVFVPTLDGRSYSLSINKDLIEPGEEDVIPGEGLPC  305 (306)
T ss_pred             ehhhhhcCcceeeecccCccccCcccccccCCCceeeecCCCCCC
Confidence            99999999999999999973 34444 457899999999999985

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=99.84  E-value=5.4e-21  Score=154.80  Aligned_cols=80  Identities=38%  Similarity=0.737  Sum_probs=70.6

Q ss_pred             ceEEEEeeCHHhhhCCCEEEEeccCC-eEEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHH
Q 012301          347 DLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERE  425 (466)
Q Consensus       347 dL~~~~~Isl~eAl~G~~~~i~tldG-~~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~  425 (466)
                      ||++++.|+++||++|++++|+|+|| .++|+||+++++|++++|+|+|||...+.+.+|||||+|+|.||++||++||+
T Consensus         1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk~   80 (81)
T PF01556_consen    1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQKE   80 (81)
T ss_dssp             EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHHH
T ss_pred             CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHhc
Confidence            89999999999999999999999999 57899999999999999999999998877789999999999999999999998


Q ss_pred             H
Q 012301          426 L  426 (466)
Q Consensus       426 l  426 (466)
                      |
T Consensus        81 l   81 (81)
T PF01556_consen   81 L   81 (81)
T ss_dssp             H
T ss_pred             C
Confidence            6

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=2e-19  Score=171.41  Aligned_cols=73  Identities=59%  Similarity=0.957  Sum_probs=69.0

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCccc
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~  148 (466)
                      ..|+|+||||+++|+.++||||||+|+++||||++++ |++.++|++||+||+||+||.+|..||+||+.++.-
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l  103 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL  103 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence            6689999999999999999999999999999999986 889999999999999999999999999999887653

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=4.3e-18  Score=172.05  Aligned_cols=72  Identities=56%  Similarity=0.953  Sum_probs=67.8

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHHHhchhhhhcccccccccCcc
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~----~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~  147 (466)
                      +.|||.+|+|+++||.+|||+|||++++.||||+..++    .|++.|+.|.+||||||||.+|++||.||++|++
T Consensus         8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            45899999999999999999999999999999998653    5789999999999999999999999999999987

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1.3e-16  Score=150.86  Aligned_cols=69  Identities=59%  Similarity=0.862  Sum_probs=63.8

Q ss_pred             ccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHHHhchhhhhccccccc
Q 012301           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (466)
Q Consensus        74 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~--~~~~f~~i~~Ay~vL~d~~~R~~yd~~g  142 (466)
                      .+..+||+||||+++|+..|||+|||++|++||||+++...  +.++|+.|++||++|+|+.+|+.||+++
T Consensus         3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            35678999999999999999999999999999999998543  8899999999999999999999999973

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.70  E-value=5.4e-18  Score=184.86  Aligned_cols=77  Identities=36%  Similarity=0.587  Sum_probs=70.8

Q ss_pred             ccccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCccc
Q 012301           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (466)
Q Consensus        72 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~  148 (466)
                      .+....+||+||||+++||.+|||+|||+||++||||+++.+.+.++|++|++||+|||||.+|+.||+||..++..
T Consensus       568 ~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~  644 (1136)
T PTZ00341        568 IEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG  644 (1136)
T ss_pred             ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence            44456899999999999999999999999999999999987778899999999999999999999999999887653

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.68  E-value=2.7e-17  Score=126.90  Aligned_cols=62  Identities=53%  Similarity=0.879  Sum_probs=58.8

Q ss_pred             ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHHHhchhhhhcccc
Q 012301           78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSDDKKRAMYD  139 (466)
Q Consensus        78 ~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~--~~~~f~~i~~Ay~vL~d~~~R~~yd  139 (466)
                      |||+||||+++++.++||++|+++++++|||++....  +.+.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            6899999999999999999999999999999987644  7899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=7.6e-17  Score=158.90  Aligned_cols=88  Identities=49%  Similarity=0.762  Sum_probs=74.8

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCC
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS  154 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~  154 (466)
                      ..|||++|||+.+|+.+||++|||+.|++||||+|++ |.|.++|+++.+||+||+|+.+|+.||.++..+....     
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~-----   78 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ-----   78 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch-----
Confidence            6799999999999999999999999999999999984 7899999999999999999999999999997664322     


Q ss_pred             CCCCCCCcCccccccC
Q 012301          155 SAYTTNPFDLFETFFG  170 (466)
Q Consensus       155 ~~~~~~~~d~f~~fFg  170 (466)
                        -..+++++|...|+
T Consensus        79 --~~~d~~~~~r~~f~   92 (296)
T KOG0691|consen   79 --GREDQADGFRKKFG   92 (296)
T ss_pred             --hhhhHHHHHHHHhh
Confidence              11344555655554

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=4.3e-17  Score=164.87  Aligned_cols=73  Identities=51%  Similarity=0.742  Sum_probs=66.5

Q ss_pred             cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhchhhhhcccccccccCcc
Q 012301           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (466)
Q Consensus        75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~  147 (466)
                      +.+.||+||||.++|+..|||++||+||++||||+|++  .++++.|+.|+.||+|||||..|+-||..-++.+.
T Consensus         6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~   80 (508)
T KOG0717|consen    6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR   80 (508)
T ss_pred             hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence            45679999999999999999999999999999999886  57899999999999999999999999987665443

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=4.6e-16  Score=156.99  Aligned_cols=119  Identities=33%  Similarity=0.695  Sum_probs=95.9

Q ss_pred             eeeeecccccCcccccCcc-------eeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec-------
Q 012301          220 SHLETCEVCTGTGAKMGSK-------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-------  285 (466)
Q Consensus       220 ~~~~~C~~C~GtG~~~~~~-------~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C-------  285 (466)
                      +..++|++|+|+|.....+       +++|+.|+|+|+++.            .+|+.|+|.|.+.+..-.++       
T Consensus       157 t~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~------------~pC~~C~G~G~v~~~~~i~V~IPaGv~  224 (371)
T COG0484         157 TDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK------------DPCGKCKGKGRVKKKKSISVNIPAGVD  224 (371)
T ss_pred             CCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC------------CCCCCCCCCCeEeeeeEEEEECCCCCc
Confidence            3678999999999864443       689999999999885            79999999999766533333       


Q ss_pred             -------cCceEE-------------------------------------------------EeeeEEEEEcCCCCcCCc
Q 012301          286 -------SGEGRI-------------------------------------------------RLKKNIKVKVPPGVSTGS  309 (466)
Q Consensus       286 -------~G~G~v-------------------------------------------------~~~~~l~V~Ip~G~~~G~  309 (466)
                             .|+|..                                                 +....++|+||+|+++|+
T Consensus       225 ~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~  304 (371)
T COG0484         225 DGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGE  304 (371)
T ss_pred             cCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCc
Confidence                   333322                                                 334458999999999999


Q ss_pred             EEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301          310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (466)
Q Consensus       310 ~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~  350 (466)
                      +++|+|+|++..++...|||||+|+|..|..+..+...|+.
T Consensus       305 ~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~  345 (371)
T COG0484         305 VFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLE  345 (371)
T ss_pred             EEEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHH
Confidence            99999999998777778999999999999998877766654

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=5.7e-16  Score=144.46  Aligned_cols=69  Identities=51%  Similarity=0.828  Sum_probs=63.8

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---cchHHHHHHHHHHHHHhchhhhhccccccccc
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE---PGATEKFKEISAAYEVLSDDKKRAMYDQYGEA  144 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~  144 (466)
                      ..|+|+||||.++|+..+|++||++|++++|||+++.   .+++++|+.++.||.||+|.++|+.||+.|.-
T Consensus        13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i   84 (264)
T KOG0719|consen   13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI   84 (264)
T ss_pred             ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence            4599999999999999999999999999999999953   46889999999999999999999999998843

>PHA03102 Small T antigen; Reviewed

Probab=99.60  E-value=9.5e-16  Score=137.46  Aligned_cols=67  Identities=25%  Similarity=0.375  Sum_probs=61.9

Q ss_pred             cccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCc
Q 012301           77 GDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV  146 (466)
Q Consensus        77 ~~~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~  146 (466)
                      ..+|+||||+++|  |.+|||+|||++|+++|||++.   +.++|++|++||++|+|+.+|..||.+|....
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg---~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~   73 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG---DEEKMKELNTLYKKFRESVKSLRDLDGEEDSS   73 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc---hhHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence            4589999999999  9999999999999999999973   46899999999999999999999999997654

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.58  E-value=2.2e-15  Score=114.51  Aligned_cols=58  Identities=66%  Similarity=0.950  Sum_probs=53.6

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CcchHHHHHHHHHHHHHhchhhh
Q 012301           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK--EPGATEKFKEISAAYEVLSDDKK  134 (466)
Q Consensus        77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~--~~~~~~~f~~i~~Ay~vL~d~~~  134 (466)
                      .|||+||||+++++.++||+||+++++++|||++.  .+.+.+.|.+|++||++|+||.+
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence            37999999999999999999999999999999987  46788999999999999999853

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.58  E-value=3.4e-15  Score=146.82  Aligned_cols=71  Identities=49%  Similarity=0.764  Sum_probs=63.9

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHHHhchhhhhcccccccccCcc
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~----~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~  147 (466)
                      .+|||+||||.++|+..||-||||++|.+||||...++    .++++|..|..|-|||+||++|+.||. |+.-+.
T Consensus       393 kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD  467 (504)
T KOG0624|consen  393 KRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLD  467 (504)
T ss_pred             cchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCC
Confidence            56999999999999999999999999999999987653    478899999999999999999999998 555554

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=3e-15  Score=138.59  Aligned_cols=71  Identities=42%  Similarity=0.688  Sum_probs=66.0

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCc
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV  146 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~  146 (466)
                      ..|+||||||+++||.+|||+|||+|+++||||+++. .+.++.|.+|++||+.|+|+..|..|..||....
T Consensus        98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG  169 (230)
T KOG0721|consen   98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG  169 (230)
T ss_pred             cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence            4599999999999999999999999999999999987 6778889999999999999999999999997653

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.56  E-value=5.1e-15  Score=110.34  Aligned_cols=54  Identities=70%  Similarity=1.073  Sum_probs=51.1

Q ss_pred             ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhch
Q 012301           78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSD  131 (466)
Q Consensus        78 ~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d  131 (466)
                      |||++|||+++++.++||++||+|++++|||++.. +.+.+.|.+|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            69999999999999999999999999999999876 6688999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=1.2e-14  Score=150.85  Aligned_cols=119  Identities=29%  Similarity=0.654  Sum_probs=91.9

Q ss_pred             eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec----------
Q 012301          221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C----------  285 (466)
                      ....|+.|+|+|.....     ...+|+.|+|+|+++.            ..|+.|.|.|.+.+.+-.++          
T Consensus       174 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~  241 (391)
T PRK14284        174 GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT------------DPCSVCRGQGRIKDKRSVHVHIPAGVDSGM  241 (391)
T ss_pred             CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC------------CcCCCCCCcceecceEEEEEEECCCCCCCC
Confidence            35689999999975322     2579999999999865            68999999998755422222          


Q ss_pred             ----cCceE----------E---------------------------------------Eee--eEEEEEcCCCCcCCcE
Q 012301          286 ----SGEGR----------I---------------------------------------RLK--KNIKVKVPPGVSTGSI  310 (466)
Q Consensus       286 ----~G~G~----------v---------------------------------------~~~--~~l~V~Ip~G~~~G~~  310 (466)
                          .|+|.          +                                       +..  +.++|+||+|+++|++
T Consensus       242 ~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~~  321 (391)
T PRK14284        242 RLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGTI  321 (391)
T ss_pred             EEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCCCeE
Confidence                33222          1                                       222  6789999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEE
Q 012301          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (466)
Q Consensus       311 i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~  351 (466)
                      ++|+|+|++...+..+|||||+|+|..|+.++.++.+|+..
T Consensus       322 ~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~  362 (391)
T PRK14284        322 LKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQ  362 (391)
T ss_pred             EEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHH
Confidence            99999999976556789999999999999888887766543

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=1.2e-14  Score=149.85  Aligned_cols=119  Identities=30%  Similarity=0.596  Sum_probs=93.1

Q ss_pred             eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (466)
                      ....|+.|+|+|.....         ...+|+.|+|+|+++.            ..|..|+|.|.+.+..-.++      
T Consensus       168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~  235 (369)
T PRK14282        168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG------------EYCHECGGSGRIRRRVRTTVKIPAGV  235 (369)
T ss_pred             CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC------------CCCCCCCCceeEEEEEEEEEEeCCCC
Confidence            35689999999976432         2568999999999865            68999999997655422222      


Q ss_pred             --------cCceE----------E----------------------------------------EeeeEEEEEcCCCCcC
Q 012301          286 --------SGEGR----------I----------------------------------------RLKKNIKVKVPPGVST  307 (466)
Q Consensus       286 --------~G~G~----------v----------------------------------------~~~~~l~V~Ip~G~~~  307 (466)
                              .|+|.          +                                        .+.++++|+||+|+++
T Consensus       236 ~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~  315 (369)
T PRK14282        236 EDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQP  315 (369)
T ss_pred             CCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCC
Confidence                    22222          1                                        1234689999999999


Q ss_pred             CcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEE
Q 012301          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (466)
Q Consensus       308 G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~  351 (466)
                      |++++|+|+|++...++.+|||||+|+|..|+.|++++.+|+..
T Consensus       316 g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~  359 (369)
T PRK14282        316 ETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKE  359 (369)
T ss_pred             CCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999965455689999999999999999999887654

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=1.8e-14  Score=148.76  Aligned_cols=120  Identities=33%  Similarity=0.619  Sum_probs=93.0

Q ss_pred             eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (466)
                      ....|+.|+|+|.....         .+.+|+.|+|+|+++.            ..|+.|+|.|.+.+.+-.++      
T Consensus       157 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IppG~  224 (377)
T PRK14298        157 SPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE------------SPCPVCSGTGKVRKTRKITVNVPAGA  224 (377)
T ss_pred             CCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC------------CCCCCCCCccEEEEEEEEEecCCCCC
Confidence            34679999999975432         2578999999998865            68999999998765422222      


Q ss_pred             --------cCce----------EE---------------------------------------EeeeEEEEEcCCCCcCC
Q 012301          286 --------SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTG  308 (466)
Q Consensus       286 --------~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G  308 (466)
                              .|+|          .+                                       +.+..++|+||+|+++|
T Consensus       225 ~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g  304 (377)
T PRK14298        225 DSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTH  304 (377)
T ss_pred             CCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccC
Confidence                    2222          11                                       22344799999999999


Q ss_pred             cEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEE
Q 012301          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI  352 (466)
Q Consensus       309 ~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~  352 (466)
                      ++++|+|+|++...+...|||||+|+|..|+.|++++.+|+.++
T Consensus       305 ~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l  348 (377)
T PRK14298        305 SVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF  348 (377)
T ss_pred             CEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999765556899999999999999999998876643

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.51  E-value=2.3e-14  Score=147.57  Aligned_cols=120  Identities=30%  Similarity=0.595  Sum_probs=93.2

Q ss_pred             eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeee-----------
Q 012301          221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK-----------  284 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~-----------  284 (466)
                      ....|+.|+|+|.....     .+.+|+.|+|+|+++.            ..|..|+|.|.+.+..-.+           
T Consensus       160 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~  227 (366)
T PRK14294        160 SPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV------------SPCKTCHGQGRVRVSKTVQVKIPAGVDTGS  227 (366)
T ss_pred             CcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC------------cCCCCCCCceEeecceeEEEecCCCCcCCc
Confidence            35689999999975422     2679999999999865            6899999999876542222           


Q ss_pred             ---ccCceE----------E---------------------------------------EeeeEEEEEcCCCCcCCcEEE
Q 012301          285 ---CSGEGR----------I---------------------------------------RLKKNIKVKVPPGVSTGSILR  312 (466)
Q Consensus       285 ---C~G~G~----------v---------------------------------------~~~~~l~V~Ip~G~~~G~~i~  312 (466)
                         ..|+|.          +                                       +.+..++|+||+|+++|++++
T Consensus       228 ~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~ir  307 (366)
T PRK14294        228 RLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFR  307 (366)
T ss_pred             EEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEE
Confidence               233221          1                                       123457999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEE
Q 012301          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI  352 (466)
Q Consensus       313 l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~  352 (466)
                      |+|+|++.+.+..+|||||+|+|.+|+.|++++.+|+..+
T Consensus       308 i~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~  347 (366)
T PRK14294        308 FKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEF  347 (366)
T ss_pred             ECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            9999999765557899999999999999999988876643

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.50  E-value=2.6e-14  Score=147.13  Aligned_cols=120  Identities=31%  Similarity=0.656  Sum_probs=95.0

Q ss_pred             eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (466)
                      ....|+.|+|+|.....         ...+|+.|+|.|++++            ..|+.|+|.|.+....-.++      
T Consensus       164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~  231 (365)
T PRK14290        164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE------------EKCPRCNGTGTVVVNEDISVKIPKGA  231 (365)
T ss_pred             CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc------------CCCCCCCCceeEEEeeEEEEEECCCC
Confidence            45689999999975322         1468999999999865            78999999999765433322      


Q ss_pred             --------cCceE--------E---------------------------------------EeeeEEEEEcCCCCcCCcE
Q 012301          286 --------SGEGR--------I---------------------------------------RLKKNIKVKVPPGVSTGSI  310 (466)
Q Consensus       286 --------~G~G~--------v---------------------------------------~~~~~l~V~Ip~G~~~G~~  310 (466)
                              .|+|.        +                                       +..++++|+||+|+++|++
T Consensus       232 ~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~  311 (365)
T PRK14290        232 TDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEV  311 (365)
T ss_pred             CCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcE
Confidence                    33321        1                                       2345689999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEE
Q 012301          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI  352 (466)
Q Consensus       311 i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~  352 (466)
                      ++|+|+|++.+.+..+|||||+|+|.+|+.|++++.+|+.++
T Consensus       312 iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~  353 (365)
T PRK14290        312 LKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF  353 (365)
T ss_pred             EEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999765567899999999999999999999887653

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.50  E-value=3.3e-14  Score=146.73  Aligned_cols=120  Identities=33%  Similarity=0.676  Sum_probs=93.5

Q ss_pred             eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec----------
Q 012301          221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C----------  285 (466)
                      ....|+.|+|+|.....     ...+|+.|+|+|+++.            ..|+.|+|.|.+.+....++          
T Consensus       158 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~  225 (371)
T PRK10767        158 SPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK------------DPCKKCHGQGRVEKEKTLSVKIPAGVDTGD  225 (371)
T ss_pred             CCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC------------CCCCCCCCCceEeeeeeEEEecCCCCCCCc
Confidence            34689999999975321     3568999999999865            68999999998765433322          


Q ss_pred             ----cCce----------EE---------------------------------------EeeeEEEEEcCCCCcCCcEEE
Q 012301          286 ----SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTGSILR  312 (466)
Q Consensus       286 ----~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G~~i~  312 (466)
                          .|+|          .+                                       +.+..++|+||+|+++|++++
T Consensus       226 ~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~  305 (371)
T PRK10767        226 RIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFR  305 (371)
T ss_pred             EEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEE
Confidence                2222          11                                       123468999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEE
Q 012301          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI  352 (466)
Q Consensus       313 l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~  352 (466)
                      |+|+|++...++.+|||||+|+|..|+.|++++.+|+.++
T Consensus       306 i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l  345 (371)
T PRK10767        306 LRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF  345 (371)
T ss_pred             ECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            9999999765567899999999999999999998876643

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.49  E-value=4.4e-14  Score=145.34  Aligned_cols=119  Identities=24%  Similarity=0.523  Sum_probs=92.3

Q ss_pred             eeeecccccCcccccC-----cceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec----------
Q 012301          221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~-----~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C----------  285 (466)
                      ....|+.|+|+|....     ..+.+|+.|+|+|+++.            ..|..|+|.|.+.+..-.++          
T Consensus       162 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~  229 (365)
T PRK14285        162 SPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS------------NPCKSCKGKGSLKKKETIELKIPAGIDDNQ  229 (365)
T ss_pred             CCccCCCccCceeEEecCceeEEeeecCCCCCcccccC------------CCCCCCCCCCEEeccEEEEEEECCCCCCCC
Confidence            3568999999996532     23679999999999875            68999999998765422222          


Q ss_pred             ----cCc----------eEE----------------------------------------EeeeEEEEEcCCCCcCCcEE
Q 012301          286 ----SGE----------GRI----------------------------------------RLKKNIKVKVPPGVSTGSIL  311 (466)
Q Consensus       286 ----~G~----------G~v----------------------------------------~~~~~l~V~Ip~G~~~G~~i  311 (466)
                          .|+          |.+                                        .+.++++|.||+|+++|+++
T Consensus       230 ~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~i  309 (365)
T PRK14285        230 QIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQI  309 (365)
T ss_pred             EEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEE
Confidence                222          211                                        22357999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEE
Q 012301          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (466)
Q Consensus       312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~  351 (466)
                      +|+|+|++.+.+...|||||+|+|++|+.|++++..|+..
T Consensus       310 rl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~  349 (365)
T PRK14285        310 IIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLEN  349 (365)
T ss_pred             EECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            9999999976555579999999999999999988766543

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.49  E-value=4.6e-14  Score=145.56  Aligned_cols=120  Identities=29%  Similarity=0.563  Sum_probs=91.6

Q ss_pred             eeeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec---------
Q 012301          220 SHLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC---------  285 (466)
Q Consensus       220 ~~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C---------  285 (466)
                      .....|+.|+|+|.....     ...+|+.|+|+|+++.            ..|+.|+|.|.+.+..-.++         
T Consensus       159 ~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G  226 (373)
T PRK14301        159 TSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT------------HPCPKCKGSGIVQQTRELKVRIPAGVDTG  226 (373)
T ss_pred             CCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC------------CCCCCCCCCceeccceEEEEEeCCCCcCC
Confidence            345689999999975422     2679999999999875            68999999998755322222         


Q ss_pred             -----cCce----------EE---------------------------------------EeeeEEEEEcCCCCcCCcEE
Q 012301          286 -----SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTGSIL  311 (466)
Q Consensus       286 -----~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G~~i  311 (466)
                           .|+|          .+                                       +.+..++|+||+|+++|+++
T Consensus       227 ~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~  306 (373)
T PRK14301        227 SRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVF  306 (373)
T ss_pred             CEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEE
Confidence                 2222          11                                       22344899999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEE
Q 012301          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (466)
Q Consensus       312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~  351 (466)
                      +|+|+|++...+..+|||||+|+|..|+.++.+..+++..
T Consensus       307 ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~  346 (373)
T PRK14301        307 RLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLRE  346 (373)
T ss_pred             EEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            9999999976556689999999999999888777665543

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.47  E-value=9e-14  Score=143.43  Aligned_cols=118  Identities=25%  Similarity=0.547  Sum_probs=90.5

Q ss_pred             eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec----------
Q 012301          221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C----------  285 (466)
                      ....|+.|+|+|.....     ...+|+.|+|+|+++.            ..|+.|+|.|.+.+..-.++          
T Consensus       161 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~  228 (372)
T PRK14300        161 TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK------------NPCKKCHGMGRYHKQRNLSVNIPAGVENGT  228 (372)
T ss_pred             CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC------------CCCCCCCCceEEEeeEEEEEEECCCCCCCc
Confidence            34689999999976322     2568999999999875            68999999999765422222          


Q ss_pred             ----cCce----------EE---------------------------------------E-eeeEEEEEcCCCCcCCcEE
Q 012301          286 ----SGEG----------RI---------------------------------------R-LKKNIKVKVPPGVSTGSIL  311 (466)
Q Consensus       286 ----~G~G----------~v---------------------------------------~-~~~~l~V~Ip~G~~~G~~i  311 (466)
                          .|+|          .+                                       + ..+.++|+||+|+++|+++
T Consensus       229 ~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~i  308 (372)
T PRK14300        229 RIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQL  308 (372)
T ss_pred             EEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEE
Confidence                2222          11                                       1 2357999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (466)
Q Consensus       312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~  350 (466)
                      +|+|+|++.+.+..+|||||+|+|..|..|+-++..|+.
T Consensus       309 ri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~l~  347 (372)
T PRK14300        309 RLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELLE  347 (372)
T ss_pred             EECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence            999999987655678999999999999888776655443

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.47  E-value=1.1e-13  Score=143.12  Aligned_cols=118  Identities=28%  Similarity=0.597  Sum_probs=89.9

Q ss_pred             eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (466)
                      ....|+.|+|+|.....         ...+|+.|+|+|.++.            .+|+.|+|.|.+.+.+-.++      
T Consensus       155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~  222 (378)
T PRK14278        155 KPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP------------DPCHECAGDGRVRARREITVKIPAGV  222 (378)
T ss_pred             CceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC------------CCCCCCCCceeEecceEEEEEECCCC
Confidence            45689999999975322         2568999999999875            68999999998765422222      


Q ss_pred             --------cCce----------EE---------------------------------------Ee-eeEEEEEcCCCCcC
Q 012301          286 --------SGEG----------RI---------------------------------------RL-KKNIKVKVPPGVST  307 (466)
Q Consensus       286 --------~G~G----------~v---------------------------------------~~-~~~l~V~Ip~G~~~  307 (466)
                              .|+|          .+                                       +. .+.++|+||+|+++
T Consensus       223 ~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~  302 (378)
T PRK14278        223 GDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQP  302 (378)
T ss_pred             CCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCC
Confidence                    2222          11                                       22 56789999999999


Q ss_pred             CcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (466)
Q Consensus       308 G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~  350 (466)
                      |++++|+|+|++...+...|||||+|+|..|+.++.+...|+.
T Consensus       303 g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~  345 (378)
T PRK14278        303 GSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELLR  345 (378)
T ss_pred             CcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHH
Confidence            9999999999997655668999999999999877766655433

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.46  E-value=1.2e-13  Score=142.57  Aligned_cols=118  Identities=31%  Similarity=0.539  Sum_probs=89.9

Q ss_pred             eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeee-----------
Q 012301          221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK-----------  284 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~-----------  284 (466)
                      ....|+.|+|+|.....     ...+|+.|+|+|+++.            ..|..|+|.|.+.+..-..           
T Consensus       166 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~  233 (372)
T PRK14286        166 SPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS------------NPCKTCGGQGLQEKRRTINIKIPPGVETGS  233 (372)
T ss_pred             CCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec------------ccCCCCCCCcEEecceEEEEEECCCCCCCC
Confidence            34689999999975322     3578999999999875            6899999999876532222           


Q ss_pred             ---ccCc----------eEE----------------------------------------EeeeEEEEEcCCCCcCCcEE
Q 012301          285 ---CSGE----------GRI----------------------------------------RLKKNIKVKVPPGVSTGSIL  311 (466)
Q Consensus       285 ---C~G~----------G~v----------------------------------------~~~~~l~V~Ip~G~~~G~~i  311 (466)
                         ..|+          |.+                                        .+.+.++|+||+|+++|+++
T Consensus       234 ~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~  313 (372)
T PRK14286        234 RLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVF  313 (372)
T ss_pred             EEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEE
Confidence               2222          222                                        12346899999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (466)
Q Consensus       312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~  350 (466)
                      +|+|+|++...+...|||||+|+|..|+.++.++.+|+.
T Consensus       314 ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~  352 (372)
T PRK14286        314 RLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELIE  352 (372)
T ss_pred             EECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHH
Confidence            999999997655568999999999999888777665443

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.46  E-value=1e-13  Score=142.91  Aligned_cols=119  Identities=30%  Similarity=0.632  Sum_probs=91.5

Q ss_pred             eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (466)
                      ....|+.|+|+|.....         ...+|+.|+|+|.++.            ..|..|+|.|.+......++      
T Consensus       154 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~  221 (371)
T PRK14287        154 KPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK------------QKCATCGGKGKVRKRKKINVKVPAGI  221 (371)
T ss_pred             CCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc------------ccCCCCCCeeEEeeeEEEEEEECCcC
Confidence            45689999999975332         2578999999999875            68999999998755433322      


Q ss_pred             --------cCceE----------E---------------------------------------EeeeEEEEEcCCCCcCC
Q 012301          286 --------SGEGR----------I---------------------------------------RLKKNIKVKVPPGVSTG  308 (466)
Q Consensus       286 --------~G~G~----------v---------------------------------------~~~~~l~V~Ip~G~~~G  308 (466)
                              .|+|.          +                                       +.+..++|+||+|+++|
T Consensus       222 ~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g  301 (371)
T PRK14287        222 DHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTG  301 (371)
T ss_pred             CCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCC
Confidence                    22221          1                                       22345899999999999


Q ss_pred             cEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEE
Q 012301          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (466)
Q Consensus       309 ~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~  351 (466)
                      ++++|+|+|++...+...|||||+|+|..|+.|+++...|+..
T Consensus       302 ~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~  344 (371)
T PRK14287        302 TSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMRE  344 (371)
T ss_pred             cEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence            9999999999976556689999999999999998888765543

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.45  E-value=1.5e-13  Score=142.66  Aligned_cols=117  Identities=29%  Similarity=0.601  Sum_probs=89.1

Q ss_pred             eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec----------
Q 012301          221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C----------  285 (466)
                      ...+|+.|+|+|.....     ...+|+.|+|+|++++            ..|..|.|.|.+.+..-.++          
T Consensus       189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~  256 (392)
T PRK14279        189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE------------DPCEECKGTGVTTRTRTINVRIPPGVEDGQ  256 (392)
T ss_pred             CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC------------CcCCCCCCCeEEEEeeeeEEEeCCCCCCCc
Confidence            45789999999976432     2579999999999876            68999999998765422222          


Q ss_pred             ----cCce----------EE---------------------------------------EeeeEEEEEcCCCCcCCcEEE
Q 012301          286 ----SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTGSILR  312 (466)
Q Consensus       286 ----~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G~~i~  312 (466)
                          .|+|          .+                                       +.+..++|+||+|+++|++|+
T Consensus       257 ~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~ir  336 (392)
T PRK14279        257 RIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRILR  336 (392)
T ss_pred             EEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEEE
Confidence                2222          21                                       223458999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (466)
Q Consensus       313 l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~  350 (466)
                      |+|+|++.. ++.+|||||+|+|..|+.++.+...|+.
T Consensus       337 i~g~G~p~~-~~~~GDL~I~~~v~~P~~Ls~~q~~~l~  373 (392)
T PRK14279        337 VRGRGVPKR-SGGAGDLLVTVKVAVPPNLDGAAAEALE  373 (392)
T ss_pred             ECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence            999999964 4568999999999999877766655443

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.45  E-value=1.4e-13  Score=141.81  Aligned_cols=117  Identities=22%  Similarity=0.504  Sum_probs=89.7

Q ss_pred             eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec----------
Q 012301          221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C----------  285 (466)
                      ....|+.|+|+|.....     ...+|+.|+|+|+++.            ..|..|+|.|.+.+..-.++          
T Consensus       155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~  222 (369)
T PRK14288        155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK------------TPCQACKGKTYILKDEEIDAIIPEGIDDQN  222 (369)
T ss_pred             CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc------------ccCccCCCcceEEEEEEEEEecCCCCCCCC
Confidence            45789999999975322     2568999999999875            68999999998766433322          


Q ss_pred             ----cCceE---------E----------------------------------------EeeeEEEEEcCCCCcCCcEEE
Q 012301          286 ----SGEGR---------I----------------------------------------RLKKNIKVKVPPGVSTGSILR  312 (466)
Q Consensus       286 ----~G~G~---------v----------------------------------------~~~~~l~V~Ip~G~~~G~~i~  312 (466)
                          .|+|.         +                                        .+.+.++|+||+|+++|++++
T Consensus       223 ~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~  302 (369)
T PRK14288        223 RMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFA  302 (369)
T ss_pred             EEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEE
Confidence                22222         1                                        223468999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeccccccCCcceE
Q 012301          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (466)
Q Consensus       313 l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~  349 (466)
                      |+|+|++.+.+...|||||+|+|+.|+.|+.+...++
T Consensus       303 i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l  339 (369)
T PRK14288        303 FRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELL  339 (369)
T ss_pred             EcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            9999999765445799999999999998877765543

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.44  E-value=1.6e-13  Score=140.96  Aligned_cols=116  Identities=33%  Similarity=0.730  Sum_probs=89.4

Q ss_pred             eeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeee--------
Q 012301          222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK--------  284 (466)
Q Consensus       222 ~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~--------  284 (466)
                      ...|+.|+|+|.....         ...+|+.|+|+|++++            ..|+.|.|.|.+.+..-.+        
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~  227 (354)
T TIGR02349       160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK------------EPCSTCKGKGRVKERKTITVKIPAGVD  227 (354)
T ss_pred             CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC------------CCCCCCCCCcEecccceEEEEECCCCC
Confidence            5689999999965422         2469999999999875            6799999999875532222        


Q ss_pred             ------ccCceE----------E---------------------------------------EeeeEEEEEcCCCCcCCc
Q 012301          285 ------CSGEGR----------I---------------------------------------RLKKNIKVKVPPGVSTGS  309 (466)
Q Consensus       285 ------C~G~G~----------v---------------------------------------~~~~~l~V~Ip~G~~~G~  309 (466)
                            ..|+|.          +                                       ..+..++|.||+|+++|+
T Consensus       228 ~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~  307 (354)
T TIGR02349       228 TGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGT  307 (354)
T ss_pred             CCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCc
Confidence                  122221          1                                       112368999999999999


Q ss_pred             EEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceE
Q 012301          310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (466)
Q Consensus       310 ~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~  349 (466)
                      +++|+|+|++...+..+|||||+|+|..|+.|+.++.+++
T Consensus       308 ~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l  347 (354)
T TIGR02349       308 VFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELL  347 (354)
T ss_pred             EEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            9999999999765557899999999999999988876654

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.44  E-value=2.3e-13  Score=140.67  Aligned_cols=118  Identities=33%  Similarity=0.642  Sum_probs=88.7

Q ss_pred             eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (466)
                      ....|+.|+|+|.....         ...+|+.|+|+|.++.            ..|+.|+|.|.+.+..-.++      
T Consensus       159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~i~V~Ip~G~  226 (376)
T PRK14280        159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK------------EKCPTCHGKGKVRKRKKINVKIPAGV  226 (376)
T ss_pred             CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec------------CCCCCCCCceEEEEEEEEEEEeCCCC
Confidence            45689999999975321         2568999999999865            68999999998765422222      


Q ss_pred             --------cCce----------EE---------------------------------------EeeeEEEEEcCCCCcCC
Q 012301          286 --------SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTG  308 (466)
Q Consensus       286 --------~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G  308 (466)
                              .|+|          .+                                       +.+..++|+||+|+++|
T Consensus       227 ~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g  306 (376)
T PRK14280        227 DNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTG  306 (376)
T ss_pred             cCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCC
Confidence                    2222          11                                       22345899999999999


Q ss_pred             cEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (466)
Q Consensus       309 ~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~  350 (466)
                      ++++|+|+|++...+...|||||+|+|..|+.++.+...++.
T Consensus       307 ~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~l~  348 (376)
T PRK14280        307 TQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELLR  348 (376)
T ss_pred             cEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence            999999999997655568999999999999877766654443

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.44  E-value=1.6e-13  Score=141.98  Aligned_cols=118  Identities=25%  Similarity=0.551  Sum_probs=89.3

Q ss_pred             eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (466)
                      ....|+.|+|+|.....         ...+|+.|+|+|+++.            ..|+.|+|.|.+.+....++      
T Consensus       162 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~  229 (380)
T PRK14276        162 SPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK------------EPCQTCHGTGHEKQAHTVSVKIPAGV  229 (380)
T ss_pred             CCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc------------CCCCCCCCceEEEEEEEEEEEeCCCc
Confidence            34689999999975322         2568999999999875            68999999998765433322      


Q ss_pred             --------cCce----------EE---------------------------------------EeeeEEEEEcCCCCcCC
Q 012301          286 --------SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTG  308 (466)
Q Consensus       286 --------~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G  308 (466)
                              .|+|          .+                                       +.+..++|+||+|+++|
T Consensus       230 ~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g  309 (380)
T PRK14276        230 ETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTG  309 (380)
T ss_pred             cCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCC
Confidence                    2222          11                                       22345899999999999


Q ss_pred             cEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (466)
Q Consensus       309 ~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~  350 (466)
                      ++++|+|+|++...+..+|||||+|+|..|+.++.+...++.
T Consensus       310 ~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~  351 (380)
T PRK14276        310 KKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEALK  351 (380)
T ss_pred             CEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence            999999999997655668999999999999887766655443

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.44  E-value=1.5e-13  Score=142.91  Aligned_cols=118  Identities=33%  Similarity=0.679  Sum_probs=89.7

Q ss_pred             eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (466)
                      ....|+.|+|+|.....         ...+|+.|+|+|+++.            ..|+.|+|.|.+....-.++      
T Consensus       178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~  245 (397)
T PRK14281        178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK------------DRCPACYGEGIKQGEVTVKVTVPAGV  245 (397)
T ss_pred             CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC------------CCCCCCCCCccEecceEEEEecCCCC
Confidence            35689999999975332         2568999999999876            68999999998765422222      


Q ss_pred             --------cCceE----------E---------------------------------------EeeeEEEEEcCCCCcCC
Q 012301          286 --------SGEGR----------I---------------------------------------RLKKNIKVKVPPGVSTG  308 (466)
Q Consensus       286 --------~G~G~----------v---------------------------------------~~~~~l~V~Ip~G~~~G  308 (466)
                              .|+|.          +                                       +.+..++|+||+|+++|
T Consensus       246 ~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G  325 (397)
T PRK14281        246 QDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPE  325 (397)
T ss_pred             CCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCccCCC
Confidence                    22222          1                                       22345899999999999


Q ss_pred             cEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (466)
Q Consensus       309 ~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~  350 (466)
                      ++++|+|+|++...++..|||||+|+|..|+.++.+...|+.
T Consensus       326 ~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~  367 (397)
T PRK14281        326 TMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELLK  367 (397)
T ss_pred             cEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHH
Confidence            999999999997655678999999999999877766654433

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.42  E-value=3.1e-13  Score=139.32  Aligned_cols=118  Identities=21%  Similarity=0.533  Sum_probs=87.9

Q ss_pred             eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (466)
                      ....|+.|+|+|.....         .+.+|+.|+|+|++++            ..|+.|+|.|.+.+..-.++      
T Consensus       165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~  232 (372)
T PRK14296        165 DIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK------------NKCKNCKGKGKYLERKKIEVNIPKGI  232 (372)
T ss_pred             CCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec------------ccccCCCCceEEEEEEEEEEEECCCC
Confidence            35689999999976432         2468999999999876            68999999998754322222      


Q ss_pred             --------cCceE----------E----------------------------------------EeeeEEEEEcCCCCcC
Q 012301          286 --------SGEGR----------I----------------------------------------RLKKNIKVKVPPGVST  307 (466)
Q Consensus       286 --------~G~G~----------v----------------------------------------~~~~~l~V~Ip~G~~~  307 (466)
                              .|+|.          +                                        +.+..++|+||+|+++
T Consensus       233 ~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~  312 (372)
T PRK14296        233 RPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINS  312 (372)
T ss_pred             CCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCC
Confidence                    22221          1                                        2233489999999999


Q ss_pred             CcEEEEccCCCCCC-CCCCCccEEEEEEEEeccccccCCcceEE
Q 012301          308 GSILRVVGEGDAGP-RGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (466)
Q Consensus       308 G~~i~l~g~G~~~~-~g~~~GDLiV~v~v~~~~~f~R~g~dL~~  350 (466)
                      |++++|+|+|++.. .++..|||||+|+|..|+.++.+...|+.
T Consensus       313 g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~  356 (372)
T PRK14296        313 NELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIE  356 (372)
T ss_pred             CcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHH
Confidence            99999999999843 34467999999999999887766655443

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.42  E-value=3.4e-13  Score=139.85  Aligned_cols=118  Identities=31%  Similarity=0.618  Sum_probs=89.0

Q ss_pred             eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (466)
                      ....|+.|+|+|.....         ...+|+.|+|+|+++.            ..|..|+|.|.+.+....++      
T Consensus       171 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~  238 (386)
T PRK14277        171 KPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT------------DPCNKCGGTGRIRRRRKIKVNIPAGI  238 (386)
T ss_pred             CCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc------------CCCCCCCCCcEEeeeeEEEEecCCCc
Confidence            35689999999975322         2468999999999875            68999999998755433222      


Q ss_pred             --------cCce----------EE---------------------------------------EeeeEEEEEcCCCCcCC
Q 012301          286 --------SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTG  308 (466)
Q Consensus       286 --------~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G  308 (466)
                              .|+|          .+                                       +.+..++|.||+|+++|
T Consensus       239 ~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g  318 (386)
T PRK14277        239 DDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTG  318 (386)
T ss_pred             cCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCC
Confidence                    2222          11                                       12334789999999999


Q ss_pred             cEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (466)
Q Consensus       309 ~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~  350 (466)
                      ++++|+|+|++...+...|||||+|+|..|+.++.+..+++.
T Consensus       319 ~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~l~  360 (386)
T PRK14277        319 TKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELLR  360 (386)
T ss_pred             CEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHH
Confidence            999999999997655567999999999999877766655443

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.42  E-value=3.8e-13  Score=139.25  Aligned_cols=116  Identities=28%  Similarity=0.580  Sum_probs=87.9

Q ss_pred             eeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec-------
Q 012301          222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-------  285 (466)
Q Consensus       222 ~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C-------  285 (466)
                      ...|+.|+|+|.....         ...+|+.|+|+|.++.            ..|..|+|.|.+.+.....+       
T Consensus       165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~i~V~Ip~G~~  232 (380)
T PRK14297        165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE------------DPCNKCHGKGKVRKNRKIKVNVPAGVD  232 (380)
T ss_pred             CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC------------CCCCCCCCCeEEEeEeEEEEEeCCCCC
Confidence            5689999999965321         3678999999998865            68999999997654322222       


Q ss_pred             -------cCce----------EE---------------------------------------EeeeEEEEEcCCCCcCCc
Q 012301          286 -------SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTGS  309 (466)
Q Consensus       286 -------~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G~  309 (466)
                             .|+|          .+                                       +.+..++|+||+|+++|+
T Consensus       233 ~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~  312 (380)
T PRK14297        233 TGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGT  312 (380)
T ss_pred             CCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCC
Confidence                   2211          11                                       223458999999999999


Q ss_pred             EEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceE
Q 012301          310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (466)
Q Consensus       310 ~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~  349 (466)
                      +++|+|+|++...+...|||||+|+|..|+.++.+...++
T Consensus       313 ~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l  352 (380)
T PRK14297        313 VFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEAL  352 (380)
T ss_pred             EEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHH
Confidence            9999999999765567899999999999987776665443

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=99.41  E-value=3.9e-13  Score=104.41  Aligned_cols=65  Identities=49%  Similarity=1.107  Sum_probs=54.8

Q ss_pred             cccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEE-eeeeeeccCce
Q 012301          225 CEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI-SEYCRKCSGEG  289 (466)
Q Consensus       225 C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-~~~C~~C~G~G  289 (466)
                      |+.|+|+|........+|+.|+|+|+++...+++++++++..+|+.|+|+|+++ +++|..|+|+|
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            899999999988899999999999999998888888888889999999999999 99999999976

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.41  E-value=4.8e-13  Score=138.69  Aligned_cols=117  Identities=29%  Similarity=0.576  Sum_probs=89.1

Q ss_pred             eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec----------
Q 012301          221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C----------  285 (466)
                      ....|+.|+|+|.....     .+.+|+.|+|+|+++.            ..|..|.|.|.+.+..-.++          
T Consensus       182 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~  249 (389)
T PRK14295        182 TPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD------------DPCLVCKGSGRAKSSRTMQVRIPAGVSDGQ  249 (389)
T ss_pred             CCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec------------cCCCCCCCCceEeeeeEEEEEeCCCCCCCC
Confidence            35789999999975332     2578999999999876            68999999998765422222          


Q ss_pred             ----cCce----------EE----------------------------------------EeeeEEEEEcCCCCcCCcEE
Q 012301          286 ----SGEG----------RI----------------------------------------RLKKNIKVKVPPGVSTGSIL  311 (466)
Q Consensus       286 ----~G~G----------~v----------------------------------------~~~~~l~V~Ip~G~~~G~~i  311 (466)
                          .|+|          .+                                        .+.++++|+||+|+++|+++
T Consensus       250 ~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~i  329 (389)
T PRK14295        250 RIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVL  329 (389)
T ss_pred             EEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEE
Confidence                2222          11                                        12347999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (466)
Q Consensus       312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~  350 (466)
                      +|+|+|++.. ++.+|||||+|+|..|+.++.+...|+.
T Consensus       330 ri~G~G~p~~-~~~~GDL~i~~~v~~P~~Ls~~qk~~l~  367 (389)
T PRK14295        330 RVRGKGAVRK-DGTRGDLLVTVEVAVPKDLSGKAREALE  367 (389)
T ss_pred             EECCCCcCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence            9999999964 4568999999999999877766655543

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.40  E-value=4.3e-13  Score=139.18  Aligned_cols=117  Identities=30%  Similarity=0.601  Sum_probs=89.2

Q ss_pred             eeeeecccccCcccccCcc---------eeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeee------
Q 012301          220 SHLETCEVCTGTGAKMGSK---------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK------  284 (466)
Q Consensus       220 ~~~~~C~~C~GtG~~~~~~---------~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~------  284 (466)
                      .....|+.|+|+|......         ..+|+.|+|+|+++.            ..|+.|+|.|.+....-.+      
T Consensus       169 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G  236 (386)
T PRK14289        169 NGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK------------KKCKKCGGEGIVYGEEVITVKIPAG  236 (386)
T ss_pred             CCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC------------cCCCCCCCCcEEeeeEEEEEEeCCC
Confidence            3457899999999764322         578999999998865            6799999999876542222      


Q ss_pred             --------ccCceE----------E---------------------------------------EeeeEEEEEcCCCCcC
Q 012301          285 --------CSGEGR----------I---------------------------------------RLKKNIKVKVPPGVST  307 (466)
Q Consensus       285 --------C~G~G~----------v---------------------------------------~~~~~l~V~Ip~G~~~  307 (466)
                              ..|+|.          .                                       +....++|.||+|+++
T Consensus       237 ~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~  316 (386)
T PRK14289        237 VAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQP  316 (386)
T ss_pred             CCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCC
Confidence                    222221          1                                       2234589999999999


Q ss_pred             CcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 012301          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL  348 (466)
Q Consensus       308 G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL  348 (466)
                      |++++|+|+|++...++.+|||||+|+|+.|..++.+...|
T Consensus       317 g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q~~~  357 (386)
T PRK14289        317 GKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEEKQT  357 (386)
T ss_pred             CcEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHHHHH
Confidence            99999999999976666789999999999998776665543

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.40  E-value=4.5e-13  Score=138.44  Aligned_cols=120  Identities=26%  Similarity=0.529  Sum_probs=91.0

Q ss_pred             eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (466)
                      ....|+.|+|+|.....         ...+|+.|+|.|+++.            ..|..|.|.|.+.+..-.++      
T Consensus       159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~IppG~  226 (374)
T PRK14293        159 GPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE------------DPCDACGGQGVKQVTKKLKINIPAGV  226 (374)
T ss_pred             CCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec------------cCCCCCCCCcccccceEEEEEeCCCC
Confidence            34689999999975321         2468999999999875            68999999998654322111      


Q ss_pred             --------cCc----------eEE---------------------------------------EeeeEEEEEcCCCCcCC
Q 012301          286 --------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTG  308 (466)
Q Consensus       286 --------~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G  308 (466)
                              .|+          |.+                                       ..+..++|+||+|+++|
T Consensus       227 ~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g  306 (374)
T PRK14293        227 DTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPN  306 (374)
T ss_pred             CCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCC
Confidence                    222          221                                       22334789999999999


Q ss_pred             cEEEEccCCCCCCCC-CCCccEEEEEEEEeccccccCCcceEEEE
Q 012301          309 SILRVVGEGDAGPRG-GPPGDLYVYLDVEEIPGIQRDGIDLFSTI  352 (466)
Q Consensus       309 ~~i~l~g~G~~~~~g-~~~GDLiV~v~v~~~~~f~R~g~dL~~~~  352 (466)
                      ++++|+|+|++...+ +..|||||+|+|..|+.|++++.+|+..+
T Consensus       307 ~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l  351 (374)
T PRK14293        307 TVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL  351 (374)
T ss_pred             CEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999996543 35799999999999999999998876543

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.39  E-value=6.8e-13  Score=137.25  Aligned_cols=118  Identities=28%  Similarity=0.601  Sum_probs=89.1

Q ss_pred             eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (466)
                      ....|+.|+|+|.....         ...+|+.|+|+|+.+.            ..|..|+|.|.+.+.+..++      
T Consensus       162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IppG~  229 (378)
T PRK14283        162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE------------KPCSNCHGKGVVRETKTISVKIPAGV  229 (378)
T ss_pred             CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC------------CCCCCCCCceeeccceeEEEEECCCC
Confidence            34679999999986422         2578999999998865            68999999998765422222      


Q ss_pred             --------cCce----------EE---------------------------------------EeeeEEEEEcCCCCcCC
Q 012301          286 --------SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTG  308 (466)
Q Consensus       286 --------~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G  308 (466)
                              .|+|          .+                                       +.+..++|.||+|+++|
T Consensus       230 ~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g  309 (378)
T PRK14283        230 ETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSG  309 (378)
T ss_pred             CCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCC
Confidence                    2222          11                                       12346899999999999


Q ss_pred             cEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (466)
Q Consensus       309 ~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~  350 (466)
                      ++++|+|+|++...+...|||||+|+|..|+.++.+...|+.
T Consensus       310 ~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll~  351 (378)
T PRK14283        310 TTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELLR  351 (378)
T ss_pred             CEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHH
Confidence            999999999997655568999999999999877766655443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=3.3e-13  Score=135.72  Aligned_cols=90  Identities=42%  Similarity=0.696  Sum_probs=71.9

Q ss_pred             ccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccC
Q 012301           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG  151 (466)
Q Consensus        74 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~  151 (466)
                      .+.+|||.||||.++|+..|||+|||++|+.+|||++..  .+++.+|++|-+||.||+||.+|..||.-- . +... +
T Consensus       370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~-d-le~~-~  446 (486)
T KOG0550|consen  370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ-D-LEEV-G  446 (486)
T ss_pred             hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc-c-hhhh-c
Confidence            446799999999999999999999999999999999863  578899999999999999999999999832 1 1111 1


Q ss_pred             CCCCCCCCCCcCccccc
Q 012301          152 GGSSAYTTNPFDLFETF  168 (466)
Q Consensus       152 ~~~~~~~~~~~d~f~~f  168 (466)
                      .+.  ...+|+++|.-|
T Consensus       447 ~~~--a~~dp~~~~~a~  461 (486)
T KOG0550|consen  447 SGG--AGFDPFNIFRAF  461 (486)
T ss_pred             CCC--cCcChhhhhhhc
Confidence            111  235777777666

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=1.7e-13  Score=129.20  Aligned_cols=72  Identities=40%  Similarity=0.732  Sum_probs=67.3

Q ss_pred             cccccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhccccccc
Q 012301           71 SVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (466)
Q Consensus        71 ~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g  142 (466)
                      .+.+...|.|+||||+++++.+||++|||+||++||||+++++++.+.|+.|.+||++|.|.+.|..||-+-
T Consensus        27 gLYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyal   98 (329)
T KOG0722|consen   27 GLYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYAL   98 (329)
T ss_pred             hhcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHh
Confidence            366777899999999999999999999999999999999999888899999999999999999999999743

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.37  E-value=8e-13  Score=137.89  Aligned_cols=117  Identities=24%  Similarity=0.532  Sum_probs=87.6

Q ss_pred             eeeecccccCcccccC---------cceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301          221 HLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (466)
                      ....|+.|+|+|....         ....+|+.|+|+|+++...          ..|..|+|.|.+.+..-.++      
T Consensus       165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~----------~~C~~C~G~g~v~~~~~l~V~Ip~G~  234 (421)
T PTZ00037        165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPES----------KKCKNCSGKGVKKTRKILEVNIDKGV  234 (421)
T ss_pred             CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccc----------ccCCcCCCcceeeeeeEEEEeeCCCC
Confidence            4578999999996422         1256899999999987532          68999999998765433322      


Q ss_pred             --------cCceE---------E----------------------------------------EeeeEEEEEcCCC--Cc
Q 012301          286 --------SGEGR---------I----------------------------------------RLKKNIKVKVPPG--VS  306 (466)
Q Consensus       286 --------~G~G~---------v----------------------------------------~~~~~l~V~Ip~G--~~  306 (466)
                              .|+|.         +                                        .+.+.++|+||+|  ++
T Consensus       235 ~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~  314 (421)
T PTZ00037        235 PNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVK  314 (421)
T ss_pred             CCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccC
Confidence                    33332         1                                        2344689999999  99


Q ss_pred             CCcEEEEccCCCCCCCC-CCCccEEEEEEEEec--cccccCCcc
Q 012301          307 TGSILRVVGEGDAGPRG-GPPGDLYVYLDVEEI--PGIQRDGID  347 (466)
Q Consensus       307 ~G~~i~l~g~G~~~~~g-~~~GDLiV~v~v~~~--~~f~R~g~d  347 (466)
                      +|++++|+|+|++...+ +..|||||+|+|..|  ..++.+...
T Consensus       315 pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~  358 (421)
T PTZ00037        315 PGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKE  358 (421)
T ss_pred             CCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHH
Confidence            99999999999996543 467999999999999  766655543

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.35  E-value=2.1e-12  Score=133.83  Aligned_cols=109  Identities=34%  Similarity=0.646  Sum_probs=82.8

Q ss_pred             eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec----------
Q 012301          221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------  285 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C----------  285 (466)
                      ....|+.|+|+|.....     ...+|+.|+|+|. ++            ..|..|+|.|.+.+..-.++          
T Consensus       172 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~  238 (382)
T PRK14291        172 GEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LR------------EPCSKCNGRGLVIKKETIKVRIPPGVDNGS  238 (382)
T ss_pred             CCccCCCCCCceEEEEecceEEEEecCCCCCCceE-Ec------------cCCCCCCCCceEEeeeEEEEEeCCCCCCCC
Confidence            45689999999975332     2678999999995 33            68999999998765432222          


Q ss_pred             ----cCceE----------E----------------------------------------EeeeEEEEEcCCCCcCCcEE
Q 012301          286 ----SGEGR----------I----------------------------------------RLKKNIKVKVPPGVSTGSIL  311 (466)
Q Consensus       286 ----~G~G~----------v----------------------------------------~~~~~l~V~Ip~G~~~G~~i  311 (466)
                          .|+|.          +                                        .+...++|+||+|+++|++|
T Consensus       239 ~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i  318 (382)
T PRK14291        239 KLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKI  318 (382)
T ss_pred             EEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCCEE
Confidence                33322          1                                        12346899999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEecc--ccc
Q 012301          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIP--GIQ  342 (466)
Q Consensus       312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~--~f~  342 (466)
                      +|+|+|++...+..+|||||+|+|..|.  .++
T Consensus       319 ~i~G~G~p~~~~~~~GDL~V~~~V~~P~~~~ls  351 (382)
T PRK14291        319 RVPGKGMPRLKGSGYGDLVVRVHIDVPKISMLS  351 (382)
T ss_pred             EECCCCCCCCCCCCCCCEEEEEEEEeCCCcCcC
Confidence            9999999976555789999999999986  355

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.34  E-value=1.4e-12  Score=134.63  Aligned_cols=129  Identities=26%  Similarity=0.516  Sum_probs=93.8

Q ss_pred             ccceeeeEeeeeeeecccccCcccccCcc---------eeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEee
Q 012301          210 IFGAEKEFELSHLETCEVCTGTGAKMGSK---------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISE  280 (466)
Q Consensus       210 ~~G~~~~v~~~~~~~C~~C~GtG~~~~~~---------~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~  280 (466)
                      ..|.-..........|..|+|+|......         ..+|..|+|.|..+.            ..|+.|.|.|.+...
T Consensus       145 C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~  212 (371)
T PRK14292        145 CHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIIT------------DPCTVCRGRGRTLKA  212 (371)
T ss_pred             CcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecC------------CCCCCCCCceEEeec
Confidence            44443332223357899999999764222         468999999998765            789999999987543


Q ss_pred             e--------------eeeccCceE--------E---------------------------------------EeeeEEEE
Q 012301          281 Y--------------CRKCSGEGR--------I---------------------------------------RLKKNIKV  299 (466)
Q Consensus       281 ~--------------C~~C~G~G~--------v---------------------------------------~~~~~l~V  299 (466)
                      .              .....|+|.        +                                       +.+..++|
T Consensus       213 ~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v  292 (371)
T PRK14292        213 ETVKVKLPRGIDEGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVI  292 (371)
T ss_pred             ceEEEEECCCCCCCcEEEEecCcCCCCCCCCCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEE
Confidence            2              122244332        2                                       12233579


Q ss_pred             EcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301          300 KVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (466)
Q Consensus       300 ~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~  350 (466)
                      +||+|+++|++++|+|+|++...+..+|||||+|+|..|+.|+.+...|+.
T Consensus       293 ~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~  343 (371)
T PRK14292        293 EVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALE  343 (371)
T ss_pred             ecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence            999999999999999999997666678999999999999988887766543

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.34  E-value=1.1e-12  Score=120.13  Aligned_cols=65  Identities=31%  Similarity=0.465  Sum_probs=56.5

Q ss_pred             cccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHHHhchhhhhcccccc
Q 012301           77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDKKRAMYDQY  141 (466)
Q Consensus        77 ~~~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~----~~~~f~~i~~Ay~vL~d~~~R~~yd~~  141 (466)
                      .|||++|||++.  ++.++|+++||+|++++|||++....    +...+..||+||++|+||.+|+.|+-.
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~   72 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL   72 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            589999999996  78999999999999999999985421    234588999999999999999999753

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.34  E-value=1.4e-12  Score=120.24  Aligned_cols=64  Identities=31%  Similarity=0.517  Sum_probs=56.5

Q ss_pred             cccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHHHhchhhhhccccc
Q 012301           77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEP------GATEKFKEISAAYEVLSDDKKRAMYDQ  140 (466)
Q Consensus        77 ~~~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~------~~~~~f~~i~~Ay~vL~d~~~R~~yd~  140 (466)
                      .|||++|||++.  ++..+|+++||++++++|||+....      .+.+.|..||+||++|+||.+|+.|+-
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll   72 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL   72 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence            389999999995  6889999999999999999997532      145689999999999999999999984

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=1.5e-12  Score=132.41  Aligned_cols=66  Identities=42%  Similarity=0.638  Sum_probs=63.9

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccc
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQY  141 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~  141 (466)
                      ..|.|.+|||++++|.++|||.||++|..-|||||..+.|++.|+.++.|||+|+|+++|..||.-
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e  299 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLE  299 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence            579999999999999999999999999999999999999999999999999999999999999973

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.27  E-value=6.9e-12  Score=115.47  Aligned_cols=65  Identities=28%  Similarity=0.390  Sum_probs=57.7

Q ss_pred             CcccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHHHhchhhhhccccc
Q 012301           76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEP------GATEKFKEISAAYEVLSDDKKRAMYDQ  140 (466)
Q Consensus        76 ~~~~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~------~~~~~f~~i~~Ay~vL~d~~~R~~yd~  140 (466)
                      ..|||++|||++.  .+..+|+++||+|++++|||++...      .+.+.|..||+||++|+||.+|+.|+-
T Consensus         3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL   75 (173)
T PRK00294          3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL   75 (173)
T ss_pred             CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            5689999999996  6789999999999999999997542      145689999999999999999999995

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.26  E-value=7.1e-12  Score=115.86  Aligned_cols=65  Identities=31%  Similarity=0.434  Sum_probs=56.3

Q ss_pred             CcccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC-cc-----hHHHHHHHHHHHHHhchhhhhccccc
Q 012301           76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKE-PG-----ATEKFKEISAAYEVLSDDKKRAMYDQ  140 (466)
Q Consensus        76 ~~~~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~-~~-----~~~~f~~i~~Ay~vL~d~~~R~~yd~  140 (466)
                      ..|||++|||++.  ++..+|+++||+|++++|||++.. +.     +.+.+..||+||++|+||.+|+.|+-
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll   77 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL   77 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence            3699999999995  689999999999999999999763 22     23446899999999999999999985

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.26  E-value=6.5e-12  Score=107.16  Aligned_cols=51  Identities=27%  Similarity=0.429  Sum_probs=47.6

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhc
Q 012301           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLS  130 (466)
Q Consensus        77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~  130 (466)
                      .++|+||||++++|.+|||++||+|++++|||+.   ++.+.|++|++||++|.
T Consensus        65 ~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~  115 (116)
T PTZ00100         65 SEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999985   56788999999999995

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.16  E-value=2.9e-11  Score=119.17  Aligned_cols=55  Identities=47%  Similarity=0.638  Sum_probs=50.1

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHHHhch
Q 012301           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--------PGATEKFKEISAAYEVLSD  131 (466)
Q Consensus        77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--------~~~~~~f~~i~~Ay~vL~d  131 (466)
                      .++|+||||++++|.+|||+|||+|+++||||++..        +.++++|++|++||++|+.
T Consensus       200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999642        2477899999999999975

>PHA02624 large T antigen; Provisional

Probab=99.12  E-value=5.4e-11  Score=126.80  Aligned_cols=60  Identities=32%  Similarity=0.538  Sum_probs=56.3

Q ss_pred             CcccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhccc
Q 012301           76 SGDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY  138 (466)
Q Consensus        76 ~~~~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~y  138 (466)
                      ..++|++|||+++|  +.+|||+|||++|++||||++   ++.++|++|++||++|+|+.+|..|
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            35799999999999  999999999999999999996   4578999999999999999999998

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.04  E-value=1.3e-10  Score=117.61  Aligned_cols=72  Identities=36%  Similarity=0.621  Sum_probs=64.8

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHHHhchhhhhcccccccccCccc
Q 012301           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE------PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (466)
Q Consensus        77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~------~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~  148 (466)
                      -|+||||||+.+++..+||++||+|..++||||-+.      .+-++.+++|++||+.|+|...|+.|-.||.....+
T Consensus        98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~pQ  175 (610)
T COG5407          98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSPQ  175 (610)
T ss_pred             CChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCCc
Confidence            499999999999999999999999999999999754      346789999999999999999999999999765543

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=98.96  E-value=6.2e-10  Score=90.00  Aligned_cols=51  Identities=41%  Similarity=0.740  Sum_probs=40.1

Q ss_pred             eEEEEEcCCCCcCCcEEEEccCCCCCCCCC-CCccEEEEEEEEeccccccCC
Q 012301          295 KNIKVKVPPGVSTGSILRVVGEGDAGPRGG-PPGDLYVYLDVEEIPGIQRDG  345 (466)
Q Consensus       295 ~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~-~~GDLiV~v~v~~~~~f~R~g  345 (466)
                      ++++|+||+|+++|++++++|+|++...+. ..|||||+|+|..|..++.+.
T Consensus        27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~q   78 (81)
T PF01556_consen   27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQ   78 (81)
T ss_dssp             -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHH
T ss_pred             CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHH
Confidence            478899999999999999999999866554 799999999999998876544

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.84  E-value=5.2e-09  Score=96.47  Aligned_cols=64  Identities=23%  Similarity=0.314  Sum_probs=55.6

Q ss_pred             cccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhchhhhhccccc
Q 012301           77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ  140 (466)
Q Consensus        77 ~~~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~R~~yd~  140 (466)
                      .|||++|||++.  .+..++++.|++|.+++|||+.....      +.+.-..||+||.+|.||.+|+.|=-
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL   73 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII   73 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence            589999999985  89999999999999999999975432      34567899999999999999998853

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=2.1e-09  Score=102.62  Aligned_cols=73  Identities=38%  Similarity=0.450  Sum_probs=63.6

Q ss_pred             ccccccCcccchhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHHHHhchhhhhccccccc
Q 012301           70 RSVVCASGDYYATLGVPK---SASGKEIKAAYRKLARQYHPDVNK---EPGATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (466)
Q Consensus        70 ~~~~~~~~~~Y~vLgv~~---~as~~eIk~ayr~l~~~~HPD~~~---~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g  142 (466)
                      ....|...|+|.+|||+.   .|++.+|.+|.++.+.+||||+..   +.+..+.|+.|+.||+||+|+.+|.+||.--
T Consensus        36 d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d  114 (379)
T COG5269          36 DFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND  114 (379)
T ss_pred             hhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence            334566789999999987   688999999999999999999973   2457889999999999999999999999843

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=7.1e-09  Score=103.85  Aligned_cols=105  Identities=29%  Similarity=0.570  Sum_probs=80.0

Q ss_pred             ecccccCcccccCcc----------eeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec--------
Q 012301          224 TCEVCTGTGAKMGSK----------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC--------  285 (466)
Q Consensus       224 ~C~~C~GtG~~~~~~----------~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C--------  285 (466)
                      .|..|.|+|.....+          +..|..|+|.|..+...          ..|+.|.|.+.+...+-.+.        
T Consensus       145 ~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~k----------d~C~~C~G~~~v~~kkil~v~V~~g~~~  214 (337)
T KOG0712|consen  145 KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLK----------DRCKTCSGAKVVREKKILEVHVEPGMPH  214 (337)
T ss_pred             CCCCCCCCCceeEEEeccccccccceeEeccCCCcccccccc----------ccCcccccchhhhhhheeeccccCCCcc
Confidence            799999999875443          67899999999875533          78999999987654321111        


Q ss_pred             ------cCceEE-------------------------------------------------EeeeEEEEEcCCC--CcCC
Q 012301          286 ------SGEGRI-------------------------------------------------RLKKNIKVKVPPG--VSTG  308 (466)
Q Consensus       286 ------~G~G~v-------------------------------------------------~~~~~l~V~Ip~G--~~~G  308 (466)
                            .|++..                                                 .+.+.+++.++||  +.+|
T Consensus       215 ~~ki~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~  294 (337)
T KOG0712|consen  215 GQKITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPG  294 (337)
T ss_pred             cceeeeeeeeeecCCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChh
Confidence                  111100                                                 2456789999999  8999


Q ss_pred             cEEEEccCCCCCCCCCCCccEEEEEEEEecc
Q 012301          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIP  339 (466)
Q Consensus       309 ~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~  339 (466)
                      +++++.|+||+..... .|||||.++|+.|+
T Consensus       295 ~~~~v~~~gmp~~~~~-~g~lyi~~~v~fp~  324 (337)
T KOG0712|consen  295 DTKRVEGEGMPIFRNP-KGDLYIKFEVKFPK  324 (337)
T ss_pred             HEEeecCCCcccccCC-CCcEEEEEEEEcCC
Confidence            9999999999977544 99999999999987

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.79  E-value=7.5e-09  Score=94.16  Aligned_cols=53  Identities=30%  Similarity=0.448  Sum_probs=46.2

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHHHhchhhhhcccccc
Q 012301           89 ASGKEIKAAYRKLARQYHPDVNKEP------GATEKFKEISAAYEVLSDDKKRAMYDQY  141 (466)
Q Consensus        89 as~~eIk~ayr~l~~~~HPD~~~~~------~~~~~f~~i~~Ay~vL~d~~~R~~yd~~  141 (466)
                      .+..+|+++||+|++++|||+....      .+.+.|..||+||++|+||.+|+.|+--
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~   61 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS   61 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence            4788999999999999999986432      2567899999999999999999999864

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>PRK14299 chaperone protein DnaJ; Provisional

Probab=98.77  E-value=2.4e-08  Score=100.00  Aligned_cols=72  Identities=29%  Similarity=0.442  Sum_probs=64.1

Q ss_pred             cccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCC
Q 012301          341 IQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI  419 (466)
Q Consensus       341 f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~l  419 (466)
                      +.|+|.||++.+.|+|.||++|++++| +++|. ++|+||+|+++|++++++|+|++.       |||||+|+|.-+..+
T Consensus       125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~~f  196 (291)
T PRK14299        125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPGVREGQVIRLAGKGRQG-------GDLYLVVRLLPHPVF  196 (291)
T ss_pred             CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCCcCCCcEEEECCCCCCC-------CCEEEEEEEcCCCCe
Confidence            457899999999999999999999998 67874 689999999999999999999862       999999999877654


Q ss_pred             C
Q 012301          420 S  420 (466)
Q Consensus       420 s  420 (466)
                      .
T Consensus       197 ~  197 (291)
T PRK14299        197 R  197 (291)
T ss_pred             E
Confidence            3

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=2.1e-08  Score=92.04  Aligned_cols=62  Identities=31%  Similarity=0.498  Sum_probs=56.6

Q ss_pred             cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhchhhhhc
Q 012301           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRA  136 (466)
Q Consensus        75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~  136 (466)
                      .+.|+|+||.|.+..+.++||+.||+|++..|||+|++  +.|...|.-+..||.+|-|+..|.
T Consensus        51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rk  114 (250)
T KOG1150|consen   51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRK  114 (250)
T ss_pred             cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            36799999999999999999999999999999999986  467889999999999999998554

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=98.57  E-value=9.1e-08  Score=81.31  Aligned_cols=61  Identities=36%  Similarity=0.730  Sum_probs=49.3

Q ss_pred             eeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEe
Q 012301          221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRL  293 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~  293 (466)
                      ..+.|..|+|+|.      .+|+.|+|+|.+....   .+++++...|+.|+|.|+.   .|..|.|.|.+..
T Consensus        40 ~~v~C~~C~GsG~------~~C~~C~G~G~v~~~~---~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~~  100 (111)
T PLN03165         40 NTQPCFPCSGTGA------QVCRFCVGSGNVTVEL---GGGEKEVSKCINCDGAGSL---TCTTCQGSGIQPR  100 (111)
T ss_pred             cCCCCCCCCCCCC------cCCCCCcCcCeEEEEe---CCcEEEEEECCCCCCccee---eCCCCCCCEEEee
Confidence            4578999999997      3899999999987543   2345556899999999975   4999999998743

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=98.53  E-value=3.4e-07  Score=92.33  Aligned_cols=73  Identities=18%  Similarity=0.379  Sum_probs=60.6

Q ss_pred             cCCcceEEEEeeCHHhhhCCCEEEE----eccC--C--------eEEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEE
Q 012301          343 RDGIDLFSTISISYLDAIMGTVVKV----KTVE--G--------ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHL  408 (466)
Q Consensus       343 R~g~dL~~~~~Isl~eAl~G~~~~i----~tld--G--------~~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~  408 (466)
                      ++|.||++.+.|+|.||+.|+..+|    .+++  |        .++|.||+|+++|++++++|+|+|..++ ..+||||
T Consensus       115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~  193 (306)
T PRK10266        115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENG-GPNGDLW  193 (306)
T ss_pred             CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCC-CCCccEE
Confidence            4688999999999999999996655    3343  3        3578899999999999999999997543 4689999


Q ss_pred             EEEEEECCC
Q 012301          409 FTVKVTIPN  417 (466)
Q Consensus       409 I~~~V~~P~  417 (466)
                      |+|+|. |.
T Consensus       194 v~i~v~-ph  201 (306)
T PRK10266        194 LVIHIA-PH  201 (306)
T ss_pred             EEEEEc-CC
Confidence            999999 54

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=2e-06  Score=80.80  Aligned_cols=55  Identities=33%  Similarity=0.655  Sum_probs=51.1

Q ss_pred             ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHH-Hhchh
Q 012301           78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYE-VLSDD  132 (466)
Q Consensus        78 ~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~-vL~d~  132 (466)
                      .||.+|||...|+.+|++.||.+||+++|||...+....++|.+|.+||. ||+..
T Consensus        48 e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~  103 (342)
T KOG0568|consen   48 ECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK  103 (342)
T ss_pred             HHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999888788899999999998 78743

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=2.9e-06  Score=93.77  Aligned_cols=52  Identities=38%  Similarity=0.583  Sum_probs=45.6

Q ss_pred             cccchhcCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhc
Q 012301           77 GDYYATLGVPKSA----SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLS  130 (466)
Q Consensus        77 ~~~Y~vLgv~~~a----s~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~  130 (466)
                      .+.|+||.|+-+-    ..+.||++|++||.+||||||  |+-.++|..+|+|||.|+
T Consensus      1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN--PEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN--PEGREMFERVNKAYELLS 1336 (2235)
T ss_pred             HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHHHHHHH
Confidence            4789999997632    457899999999999999999  567899999999999998

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=97.94  E-value=1.4e-05  Score=87.07  Aligned_cols=71  Identities=55%  Similarity=0.918  Sum_probs=66.4

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcc
Q 012301           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (466)
Q Consensus        77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~  147 (466)
                      .|||+||||+++|+.++||+|||+|+++||||++..+.+.++|++|++||++|+||.+|+.||.||..+..
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d   72 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD   72 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence            58999999999999999999999999999999998777888999999999999999999999999977654

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=97.91  E-value=9.5e-06  Score=75.37  Aligned_cols=48  Identities=31%  Similarity=0.662  Sum_probs=39.4

Q ss_pred             eeCCCCCCccEEEe--eeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEc
Q 012301          266 SVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV  314 (466)
Q Consensus       266 ~~C~~C~G~G~~~~--~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~  314 (466)
                      .+|+.|+|+|+++.  ++|..|+|.|++....++.+++ .|+.+|++|++.
T Consensus       100 ~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~  149 (186)
T TIGR02642       100 CKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK  149 (186)
T ss_pred             CcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence            56777777777765  5788888888888889999999 999999999875

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.84  E-value=8.8e-06  Score=63.12  Aligned_cols=44  Identities=32%  Similarity=0.919  Sum_probs=31.8

Q ss_pred             eeeecccccCcccccCcc---------eeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCcc
Q 012301          221 HLETCEVCTGTGAKMGSK---------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG  275 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~~---------~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G  275 (466)
                      ....|+.|+|+|......         ..+|+.|+|+|+++ ..          .+|+.|+|.|
T Consensus        14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~~----------~~C~~C~G~g   66 (66)
T PF00684_consen   14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-EK----------DPCKTCKGSG   66 (66)
T ss_dssp             T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--TS----------SB-SSSTTSS
T ss_pred             CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-CC----------CCCCCCCCcC
Confidence            345899999999875432         67999999999987 22          7899999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=3.7e-05  Score=63.96  Aligned_cols=52  Identities=27%  Similarity=0.318  Sum_probs=44.6

Q ss_pred             ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchh
Q 012301           78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD  132 (466)
Q Consensus        78 ~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~  132 (466)
                      ..-.||||+++++.+.||+|+|+.....|||+...   --.-.+||||+++|...
T Consensus        57 EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS---PYlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   57 EAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS---PYLASKINEAKDLLEGT  108 (112)
T ss_pred             HHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC---HHHHHHHHHHHHHHhcc
Confidence            45679999999999999999999999999999744   34456799999999753

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.62  E-value=3.1e-05  Score=81.65  Aligned_cols=68  Identities=31%  Similarity=0.736  Sum_probs=42.2

Q ss_pred             eecccccCcccccCcceeecCCCCcccEEEEeee--------CCccceee-eeeCCCCCCccEEE-eeeeeeccCceEE
Q 012301          223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ--------TPFGLFSQ-VSVCPSCGGEGEVI-SEYCRKCSGEGRI  291 (466)
Q Consensus       223 ~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~--------~~~G~~~~-~~~C~~C~G~G~~~-~~~C~~C~G~G~v  291 (466)
                      ..|+.|+|+|.... ....|+.|+|+|..-....        ...-+|.. ..+|+.|.|+|.+. ...|..|.|.|.+
T Consensus         3 ~~C~~C~g~G~i~v-~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv   80 (715)
T COG1107           3 KKCPECGGKGKIVV-GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKV   80 (715)
T ss_pred             ccccccCCCceEee-eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeE
Confidence            46888888776543 2356888888887622110        00112222 35788888888764 4788888888776

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=96.76  E-value=0.0011  Score=56.56  Aligned_cols=41  Identities=29%  Similarity=0.776  Sum_probs=32.8

Q ss_pred             ecccccCcccccCc------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEe
Q 012301          224 TCEVCTGTGAKMGS------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS  279 (466)
Q Consensus       224 ~C~~C~GtG~~~~~------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  279 (466)
                      .|+.|+|+|.....      ...+|+.|+|+|+               ..|+.|.|.|.+.+
T Consensus        54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk---------------~~C~~C~G~G~~~~  100 (111)
T PLN03165         54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGS---------------LTCTTCQGSGIQPR  100 (111)
T ss_pred             CCCCCcCcCeEEEEeCCcEEEEEECCCCCCcce---------------eeCCCCCCCEEEee
Confidence            89999999976422      1568999999996               24999999998754

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.73  E-value=0.0014  Score=64.67  Aligned_cols=30  Identities=37%  Similarity=0.810  Sum_probs=17.1

Q ss_pred             eCCCCCCccEEEeeeeeeccCceEEEeeeEEEE
Q 012301          267 VCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKV  299 (466)
Q Consensus       267 ~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V  299 (466)
                      .|+.|.|+|.   .+|.+|.|.|....-..+.|
T Consensus       247 ~C~tC~grG~---k~C~TC~gtgsll~~t~~vV  276 (406)
T KOG2813|consen  247 ECHTCKGRGK---KPCTTCSGTGSLLNYTRIVV  276 (406)
T ss_pred             cCCcccCCCC---cccccccCccceeeeEEEEE
Confidence            3444444443   46778888886654444444

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=96.48  E-value=0.0022  Score=68.14  Aligned_cols=58  Identities=36%  Similarity=0.840  Sum_probs=41.0

Q ss_pred             eeecccccCcccccCcc------------------eeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEee---
Q 012301          222 LETCEVCTGTGAKMGSK------------------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISE---  280 (466)
Q Consensus       222 ~~~C~~C~GtG~~~~~~------------------~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~---  280 (466)
                      ...|+.|+|+|......                  ..+|+.|+|+|.+...           ..|+.|+|+|++..-   
T Consensus        18 ~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~-----------~~c~~c~G~gkv~~c~~c   86 (715)
T COG1107          18 EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVY-----------DTCPECGGTGKVLTCDIC   86 (715)
T ss_pred             eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEE-----------eecccCCCceeEEeeccc
Confidence            46799999998752211                  3479999999987532           689999999886531   


Q ss_pred             ----------eeeeccCceE
Q 012301          281 ----------YCRKCSGEGR  290 (466)
Q Consensus       281 ----------~C~~C~G~G~  290 (466)
                                .|..|.-++.
T Consensus        87 G~~~~~~~~~lc~~c~~~~~  106 (715)
T COG1107          87 GDIIVPWEEGLCPECRRKPK  106 (715)
T ss_pred             cceecCcccccChhHhhCCc
Confidence                      3888866654

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.004  Score=55.63  Aligned_cols=67  Identities=24%  Similarity=0.433  Sum_probs=52.8

Q ss_pred             ccCcccchhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHHHhchhhhhccccc
Q 012301           74 CASGDYYATLGVPK--SASGKEIKAAYRKLARQYHPDVNKE------PGATEKFKEISAAYEVLSDDKKRAMYDQ  140 (466)
Q Consensus        74 ~~~~~~Y~vLgv~~--~as~~eIk~ayr~l~~~~HPD~~~~------~~~~~~f~~i~~Ay~vL~d~~~R~~yd~  140 (466)
                      ....+||.++|...  ...+..++.-|--..++.|||+...      .-+.+.-.++++||.+|.||-+|+.|=.
T Consensus         5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil   79 (168)
T KOG3192|consen    5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL   79 (168)
T ss_pred             chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            34567999997754  4466667778999999999998432      2356778999999999999999998853

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=96.18  E-value=0.0035  Score=58.44  Aligned_cols=31  Identities=29%  Similarity=0.758  Sum_probs=19.3

Q ss_pred             eecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEee
Q 012301          240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISE  280 (466)
Q Consensus       240 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~  280 (466)
                      .+|+.|+|+|.+++..          .+|+.|+|+|++...
T Consensus       100 ~~C~~C~G~G~~i~~~----------~~C~~C~G~G~v~~~  130 (186)
T TIGR02642       100 CKCPRCRGTGLIQRRQ----------RECDTCAGTGRFRPT  130 (186)
T ss_pred             CcCCCCCCeeEEecCC----------CCCCCCCCccEEeee
Confidence            4566666666665422          467777777776543

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.89  E-value=0.0046  Score=57.26  Aligned_cols=53  Identities=42%  Similarity=0.552  Sum_probs=45.6

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHHHh
Q 012301           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--------PGATEKFKEISAAYEVL  129 (466)
Q Consensus        77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--------~~~~~~f~~i~~Ay~vL  129 (466)
                      .+.|.+|++...++..+|+++|+++...+|||+-..        ..+.+++++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            589999999999999999999999999999997432        23678899999999753

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.43  E-value=0.027  Score=52.12  Aligned_cols=63  Identities=33%  Similarity=0.536  Sum_probs=48.9

Q ss_pred             ccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhchhhhhccccc
Q 012301           78 DYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ  140 (466)
Q Consensus        78 ~~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~R~~yd~  140 (466)
                      ++...+|+.+.+  ..+.++..|+.+.+.||||+.....      +.+.+..++.||.+|.||.+|+.|=.
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l   72 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL   72 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            355555665544  3456899999999999999875422      34579999999999999999998865

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=94.33  E-value=0.046  Score=58.08  Aligned_cols=28  Identities=29%  Similarity=0.396  Sum_probs=24.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCc
Q 012301           86 PKSASGKEIKAAYRKLARQYHPDVNKEP  113 (466)
Q Consensus        86 ~~~as~~eIk~ayr~l~~~~HPD~~~~~  113 (466)
                      ..=.+.+++||||||..+..||||.+..
T Consensus       397 tDLVtp~~VKKaYrKA~L~VHPDKlqq~  424 (453)
T KOG0431|consen  397 TDLVTPAQVKKAYRKAVLCVHPDKLQQK  424 (453)
T ss_pred             hhccCHHHHHHHHHhhhheeCcccccCC
Confidence            3345899999999999999999998754

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.95  E-value=0.026  Score=56.03  Aligned_cols=59  Identities=25%  Similarity=0.619  Sum_probs=42.6

Q ss_pred             eeecccccCcccccC--cceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEE
Q 012301          222 LETCEVCTGTGAKMG--SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIR  292 (466)
Q Consensus       222 ~~~C~~C~GtG~~~~--~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~  292 (466)
                      ...|+.|+|.|....  ..+..|..|-|--   .      -..-+...|..|+|+|.   ..|.+|.|.|...
T Consensus       198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~---~------~k~gt~~~C~~C~G~G~---~~C~tC~grG~k~  258 (406)
T KOG2813|consen  198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVP---P------PKIGTHDLCYMCHGRGI---KECHTCKGRGKKP  258 (406)
T ss_pred             ceeccCcCCCCccccccCcceecccccCCC---C------CCCCccchhhhccCCCc---ccCCcccCCCCcc
Confidence            578999999986322  3478899998811   0      01123378999999996   5799999999873

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.53  E-value=0.1  Score=52.28  Aligned_cols=98  Identities=23%  Similarity=0.405  Sum_probs=59.0

Q ss_pred             cccceeeeEeeeeeeecccccCcccccC-----cceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeee
Q 012301          209 SIFGAEKEFELSHLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR  283 (466)
Q Consensus       209 ~~~G~~~~v~~~~~~~C~~C~GtG~~~~-----~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~  283 (466)
                      ...|.. .........|..|.|+|....     ....+|..|+|.|.+..            ..|..|.|.|.+...+-.
T Consensus       169 t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~------------~~c~~~~g~~~v~~~k~i  235 (288)
T KOG0715|consen  169 TCFGSG-AEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR------------DNCQACSGAGQVRRAKDI  235 (288)
T ss_pred             cccCcC-cccccccccchhhhCcccccccccCCcceeecccccccceecc------------chHHHhhcchhhhhheeE
Confidence            334443 445567789999999993322     12337999999999876            459999999976554444


Q ss_pred             eccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCC
Q 012301          284 KCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGP  321 (466)
Q Consensus       284 ~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~  321 (466)
                      .....+.+....+|++..+...  --.+++.=..++..
T Consensus       236 ~i~~~~g~~~~~~l~~~~~~~~--~l~v~~~v~~~~~~  271 (288)
T KOG0715|consen  236 MIVLPAGVRSADTLRFAGHGND--DLFVRLIVAKSPSF  271 (288)
T ss_pred             EeecCcccccccEEEEecCCcc--eEEEEEEeccCccc
Confidence            4444444444444555443332  33344444444433

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=91.27  E-value=0.45  Score=41.72  Aligned_cols=55  Identities=24%  Similarity=0.288  Sum_probs=41.4

Q ss_pred             ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhh
Q 012301           78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR  135 (466)
Q Consensus        78 ~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R  135 (466)
                      .-..||+|++..+.++|.+.|.+|-...+|++.   ++.-.=.+|..|.|.|..+.+.
T Consensus        59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG---GSfYLQSKV~rAKErl~~El~~  113 (127)
T PF03656_consen   59 EARQILNVKEELSREEIQKRYKHLFKANDPSKG---GSFYLQSKVFRAKERLEQELKE  113 (127)
T ss_dssp             HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT---S-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC---CCHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999976   5666667788999998766543

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=80.94  E-value=3.4  Score=38.96  Aligned_cols=38  Identities=37%  Similarity=0.460  Sum_probs=31.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhc
Q 012301           86 PKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLS  130 (466)
Q Consensus        86 ~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~  130 (466)
                      +++||.|||.+|+.++..+|--|       ++.-.+|..||+.+.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~IL   38 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAIL   38 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHH
Confidence            57999999999999999988433       556778999998654

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	466
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		3e-20
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		5e-18
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		2e-17
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		9e-05
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		3e-17
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		1e-16
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		2e-16
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-16
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		3e-16
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		8e-16
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		1e-15
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		6e-15
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		8e-15
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		2e-14
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		2e-14
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		2e-14
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		3e-14
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		1e-13
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		3e-13
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		3e-13
1exk_A	79	Solution Structure Of The Cysteine-Rich Domain Of T		6e-11
1nlt_A	248	The Crystal Structure Of Hsp40 Ydj1 Length = 248		5e-10
2ctt_A	104	Solution Structure Of Zinc Finger Domain From Human		2e-09
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		2e-07
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		2e-07
2qsa_A	109	Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2		4e-07
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		6e-06
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		8e-06
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		5e-05
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		2e-04
2b26_A	173	The Crystal Structure Of The Protein Complex Of Yea		8e-04

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/72 (62%), Positives = 58/72 (80%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY TLG+ + AS +EIK AYR+ A +YHPD NKEPGA EKFKEI+ AY+VLSD +KR +
Sbjct: 4   DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 138 YDQYGEAGVKST 149
           +D+YGE G+K +
Sbjct: 64  FDRYGEEGLKGS 75

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
           +SGDYY  LGVP++AS KEIK AY +LA++YHPD NK +P A EKF +++ AYEVLSD+ 
Sbjct: 5   SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEV 64
Query: 134 KRAMYDQYG 142
           KR  YD YG
Sbjct: 65  KRKQYDAYG 73

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 113/268 (42%), Gaps = 52/268 (19%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYYA LGV  +   K IK AYR+LAR+YHPDV+KE  A  KFK+++ A+EVL D+++RA 
Sbjct: 29  DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 138 YDQY----GEAGVKSTVGGGSSAYTTNPF-DLFETXXXXXXXXXXXXNQTGFRTRRRSTV 192
           YDQ      + G          +Y+   F D+F +                   RRR   
Sbjct: 89  YDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQA-----------HQRRRQHA 137
Query: 193 TKGEDLRYDIVLEFSESIFGAEKEFELSH---------------LETCEVCTGTGAKMGS 237
            +G DL  ++ +   E++  AE+   +S+                +T  V    G   G 
Sbjct: 138 ARGHDLEIEVAVFLEETL--AEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQ 195
Query: 238 KMRI------CSTCGGRGQVMRTDQ-TPFGLFSQVS-----VCPSCGGEGEVISEYCRKC 285
           ++R+          G  G +       P  LF  V      V P    E  + ++     
Sbjct: 196 RIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPT 255
Query: 286 SGEGRIRLKKNIKVKVPPGVSTGSILRV 313
                  LK++I + VPPG   G  LR+
Sbjct: 256 -------LKESILLTVPPGSQAGQRLRI 276

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 295 KNIKVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISI 354
           K + VK+P GV  G  +R+              DL++ + +   P     G +L   + +
Sbjct: 181 KTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPL 240
Query: 355 SYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVT 414
           +  +A +G  V V T++    L VPPG+Q G  L +  KG   L   +  GD    +K+ 
Sbjct: 241 APWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKG---LVSKTHTGDLFAVIKIV 297
Query: 415 IPNR 418
           +P +
Sbjct: 298 MPTK 301

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYYA +GV  +   K IK AYR+LAR+YHPDV+KEP A  +FKE++ A+EVLSD+++RA 
Sbjct: 6   DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 138 YDQ 140
           YDQ
Sbjct: 66  YDQ 68

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 50/68 (73%)
Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKK 134
           +SGDYY  LGV + AS +++K AYR+LA ++HPD N  PGATE FK I  AY VLS+ +K
Sbjct: 5   SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEK 64
Query: 135 RAMYDQYG 142
           R  YDQ+G
Sbjct: 65  RKQYDQFG 72

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 54/73 (73%)
Query: 70  RSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVL 129
           +S+     D Y  LGV ++AS  +IK AY+KLAR++HPD NK+PGA ++F +IS AYE+L
Sbjct: 10  QSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEIL 69
Query: 130 SDDKKRAMYDQYG 142
           S+++KR  YD YG
Sbjct: 70  SNEEKRTNYDHYG 82

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
           A  DYY  LGV K+A  +EI+ AY++LA +YHPD N+ +  A  KFKEI  AYEVL+D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 134 KRAMYDQYGEAG 145
           KRA YDQYG A 
Sbjct: 61  KRAAYDQYGHAA 72

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
           A  DYY  LGV K+A  +EI+ AY++LA +YHPD N+ +  A  KFKEI  AYEVL+D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 134 KRAMYDQYGEAG 145
           KRA YDQYG A 
Sbjct: 61  KRAAYDQYGHAA 72

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
           A  DYY  LGV K+A  +EI+ AY++LA +YHPD N+ +  A  KFKEI  AYEVL+D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 134 KRAMYDQYGEAG 145
           KRA YDQYG A 
Sbjct: 61  KRAAYDQYGHAA 72

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 48/73 (65%)
Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
           YY  LGVPKSAS ++IK A+ KLA +YHPD NK P A  KF+EI+ AYE LSD  +R  Y
Sbjct: 9   YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 139 DQYGEAGVKSTVG 151
           D  G +   S  G
Sbjct: 69  DTLGHSAFTSGKG 81

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/65 (60%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
           YY  LGV   AS  E+K AYRK+A ++HPD  K P   E+FK+IS AYEVLSD+KKR +Y
Sbjct: 10  YYDVLGVKPDASDNELKKAYRKMALKFHPD--KNPDGAEQFKQISQAYEVLSDEKKRQIY 67
Query: 139 DQYGE 143
           DQ GE
Sbjct: 68  DQGGE 72

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSDDKKRA 136
           YY  L VP+SAS  +IK AYR+ A Q+HPD N +    A +KFKE++ AYEVLSD  KR 
Sbjct: 4   YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 137 MYDQYGEAGVKSTVGGGSSA 156
           +YD+YG  G+  T  G S A
Sbjct: 64  IYDRYGREGLTGTGTGPSRA 83

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 48/65 (73%), Gaps = 2/65 (3%)
Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
           YY  LGV  +A+ +E+K AYRKLA +YHPD  K P   EKFK+IS AYEVLSD KKR +Y
Sbjct: 8   YYDVLGVKPNATQEELKKAYRKLALKYHPD--KNPNEGEKFKQISQAYEVLSDAKKRELY 65
Query: 139 DQYGE 143
           D+ GE
Sbjct: 66  DKGGE 70

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVN-KEPGATEKFKEISAAYEVLSDDKKRA 136
           ++Y+ LGV K+AS +EI+ A++KLA + HPD N   P A   F +I+ AYEVL D+  R 
Sbjct: 22  NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDL 164
            YD+YGE G++   GG   +++   +D 
Sbjct: 82  KYDKYGEKGLEDNQGGQYESWSYYRYDF 109

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKR 135
           DYY  L VP+ AS + IK AYRKLA ++HPD N E    A  +FK+++ AYEVLSD KKR
Sbjct: 10  DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 136 AMYDQYG 142
            +YD+YG
Sbjct: 70  DIYDRYG 76

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVN-KEPGATEKFKEISAAYEVLSDDKKRA 136
           ++Y+ LGV K+AS +EI+ A++KLA + HPD N   P A   F +I+ AYEVL D+  R 
Sbjct: 3   NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDL 164
            YD+YGE G++   GG   +++   +D 
Sbjct: 63  KYDKYGEKGLEDNQGGQYESWSYYRYDF 90

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 80  YATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYD 139
           Y  LGV  SA+ +E+K  YRK A +YHPD  K  G TEKFKEIS A+E+L+D +KR +YD
Sbjct: 11  YDLLGVSPSANEQELKKGYRKAALKYHPD--KPTGDTEKFKEISEAFEILNDPQKREIYD 68
Query: 140 QYGEAGVKS 148
           QYG    +S
Sbjct: 69  QYGLEAARS 77

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/76 (52%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 69  GRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVN--KEPGATEKFKEISAAY 126
           G S      +YY  LGV  SAS ++IK AYRKLA ++HPD N   +  A +KFK +S AY
Sbjct: 1   GSSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAY 60
Query: 127 EVLSDDKKRAMYDQYG 142
           EVLSD KKR++YD+ G
Sbjct: 61  EVLSDSKKRSLYDRAG 76

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/78 (46%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 70  RSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEV 128
           RS+  +    Y  LG+ K+A+  +IK +YRKLA +YHPD N + P A +KFKEI+ A+ +
Sbjct: 10  RSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAI 69
Query: 129 LSDDKKRAMYDQYGEAGV 146
           L+D  KR +YD+YG  G+
Sbjct: 70  LTDATKRNIYDKYGSLGL 87

>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The Escherichia Coli Chaperone Protein Dnaj Length = 79

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 215 KEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQV-MRTDQTPFGLFSQVSVCPSCGG 273
           KE  +  LE C+VC G+GAK G++ + C TC G GQV MR      G F+    CP C G
Sbjct: 4   KEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ-----GFFAVQQTCPHCQG 58
Query: 274 EGEVISEYCRKCSGEGRI 291
            G +I + C KC G GR+
Sbjct: 59  RGTLIKDPCNKCHGHGRV 76

>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 17/213 (7%)
Query: 194 KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMR 253
           +G+D++++I     E   G   +  L+    C+ C G G K G+ ++ C++C G+G    
Sbjct: 10  RGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFV 68
Query: 254 TDQTPFGLFSQVSVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311
           T Q    +    + C  C G G++I   + C+ C+G+     +K ++V V PG+  G   
Sbjct: 69  TRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQ-- 126
Query: 312 RVVXXXXXXXXXXXXXDLYVYLDVEEIP--GIQRDGIDLFSTISISYLDAIMGTVVKVKT 369
           R+V                V++ V E P    +RDG DL     I  L AI G    ++ 
Sbjct: 127 RIVFKGEADQAPDVIPGDVVFI-VSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEH 185
Query: 370 VEGISELQVPPGTQPGDVL------VLAKKGAP 396
           V G   L+V  G  PG+V+      V+  KG P
Sbjct: 186 VSG-DWLKV--GIVPGEVIAPGMRKVIEGKGMP 215

>pdb|2CTT|A Chain A, Solution Structure Of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3 Length = 104

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 204 LEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFS 263
           L F+++  G  KEF ++ ++TCE C G G + G+K++ C  CGG G  M T  T  G F 
Sbjct: 10  LTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSG--METINT--GPFV 65
Query: 264 QVSVCPSCGGEGEVISEYCRKCSGEGRIRLKK 295
             S C  CGG G +I   C  C G G+ + KK
Sbjct: 66  MRSTCRRCGGRGSIIISPCVVCRGAGQAKQKK 97

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 4/66 (6%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPD----VNKEPGATEKFKEISAAYEVLSDDK 133
           DYY  LGV ++A  +EI  AYRKLA Q+HPD      ++  A +KF +I+AA EVLSD +
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 134 KRAMYD 139
            R  +D
Sbjct: 443 XRKKFD 448

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 4/66 (6%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPD----VNKEPGATEKFKEISAAYEVLSDDK 133
           DYY  LGV ++A  +EI  AYRKLA Q+HPD      ++  A +KF +I+AA EVLSD +
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 134 KRAMYD 139
            R  +D
Sbjct: 443 MRKKFD 448

>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2 Precursor From C.Elegans Length = 109

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 63  SSTYRFGRSVVCASGDYYATLGVPKSASGKE-IKAAYRKLARQYHPD--VNKEPG--ATE 117
           S+   F   + C   + Y  L V +    K+ +  AYR LAR++HPD   NKE    A E
Sbjct: 1   SNAVGFAPELYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEE 60
Query: 118 KFKEISAAYEVLSDDKKRAMYDQY 141
           +F+ I+ AYE L DD+ +  YD Y
Sbjct: 61  RFRVIATAYETLKDDEAKTNYDYY 84

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 80  YATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG-ATEKFKEISAAYEVLSDDKKRAMY 138
           Y  LGVP +A+  +IKAAY +    YHPD N     A E+F  IS AY VL     R  Y
Sbjct: 20  YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 139 DQ 140
           D+
Sbjct: 80  DR 81

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LG  + +S ++I A ++  A + HPD + E P A E F+++  A E+L++++ RA
Sbjct: 21  DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 137 MYDQY 141
            YD +
Sbjct: 81  RYDHW 85

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGAT-----EKFKEISAAYEVLS 130
           D+Y+ LG   SA+  ++K  Y+KL   YHPD      P  T     +KF EI  A+++L 
Sbjct: 11  DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 131 DDKKRAMYD 139
           +++ +  YD
Sbjct: 71  NEETKREYD 79

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGAT-----EKFKEISAAYEVLS 130
           D+Y+ LG   SA+  ++K  Y+KL   YHPD      P  T     +KF EI  A+++L 
Sbjct: 17  DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 131 DDKKRAMYD 139
           +++ +  YD
Sbjct: 77  NEETKKKYD 85

>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast Hsp40 Sis1 And Hsp70 Ssa1 Length = 173

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Query: 294 KKNIKVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTIS 353
           K  I +++ PG   G+ +                 L   +  +  P  +RDG DL  T+ 
Sbjct: 35  KTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLP 94
Query: 354 ISYLDAIMGTVVKVKTVEG----ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLF 409
           +S+ ++++G    ++T++G    +S +Q     QP        +G P    PS RG+ + 
Sbjct: 95  LSFKESLLGFSKTIQTIDGRTLPLSRVQ---PVQPSQTSTYPGQGMPTPKNPSQRGNLIV 151
Query: 410 TVKVTIP 416
             KV  P
Sbjct: 152 KYKVDYP 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	466
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	1e-100
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	9e-79
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	9e-45
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	1e-44
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	6e-43
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	6e-41
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	1e-40
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	1e-40
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	5e-40
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	2e-39
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	1e-38
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	1e-38
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	2e-38
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-38
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	5e-38
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	6e-38
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	2e-37
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	2e-37
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	1e-36
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	1e-36
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	5e-36
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	7e-36
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	2e-35
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	9e-35
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	6e-33
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	1e-32
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	4e-31
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	5e-31
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-30
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	4e-27
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-22
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	8e-21
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	5e-08
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	5e-20
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	6e-20
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	1e-19
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	4e-17
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	2e-14
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	1e-13
2guz_A	71	Mitochondrial import inner membrane translocase su	3e-12
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	3e-12
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	2e-09
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	3e-08

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score =  302 bits (776), Expect = e-100
 Identities = 95/364 (26%), Positives = 148/364 (40%), Gaps = 78/364 (21%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYYA LGV  +   K IK AYR+LAR+YHPDV+KE  A  KFK+++ A+EVL D+++RA 
Sbjct: 29  DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPF-----DLFETFFGPSMGGFPGMNQTGFRTRRRSTV 192
           YDQ  +       G     +  +       D+F + FG                RRR   
Sbjct: 89  YDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFG-----------QQAHQRRRQHA 137

Query: 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252
            +G DL  ++ +   E++    +    +                          G  +  
Sbjct: 138 ARGHDLEIEVAVFLEETLAEQTRTISYN-------------------LPVYNVFGMIESE 178

Query: 253 RTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312
                                                     K + VK+P GV  G  +R
Sbjct: 179 TP----------------------------------------KTLNVKIPAGVVDGQRIR 198

Query: 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG 372
           + G+G  G  GGP GDL++ + +   P     G +L   + ++  +A +G  V V T++ 
Sbjct: 199 LKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKE 258

Query: 373 ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELAS 432
              L VPPG+Q G  L +  KG       +  GD    +K+ +P +   K REL ++LA+
Sbjct: 259 SILLTVPPGSQAGQRLRIKGKGLV---SKTHTGDLFAVIKIVMPTKPDEKARELWQQLAA 315

Query: 433 LRNT 436
              +
Sbjct: 316 AEAS 319

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score =  244 bits (625), Expect = 9e-79
 Identities = 64/247 (25%), Positives = 104/247 (42%), Gaps = 8/247 (3%)

Query: 187 RRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCG 246
           +R     +G+D++++I     E   G   +  L+    C+ C G G K G+  + C++C 
Sbjct: 3   QRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKK-CTSCN 61

Query: 247 GRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEY--CRKCSGEGRIRLKKNIKVKVPPG 304
           G+G    T Q    +    + C  C G G++I     C+ C+G+     +K ++V V PG
Sbjct: 62  GQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPG 121

Query: 305 VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTV 364
           +  G  +   GE D  P    PGD+   +        +RDG DL     I  L AI G  
Sbjct: 122 MKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGE 180

Query: 365 VKVKTVEG-ISELQVPPG--TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISA 421
             ++ V G   ++ + PG    PG   V+  KG P        G+ +    +  P     
Sbjct: 181 FALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGG-YGNLIIKFTIKDPENHFT 239

Query: 422 KERELLE 428
            E  L +
Sbjct: 240 SEENLKK 246

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score =  150 bits (381), Expect = 9e-45
 Identities = 39/85 (45%), Positives = 56/85 (65%)

Query: 63  SSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEI 122
           S +    +S+     D Y  LGV ++AS  +IK AY+KLAR++HPD NK+PGA ++F +I
Sbjct: 3   SGSSGILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQI 62

Query: 123 SAAYEVLSDDKKRAMYDQYGEAGVK 147
           S AYE+LS+++KR  YD YG     
Sbjct: 63  SKAYEILSNEEKRTNYDHYGSGPSS 87

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score =  149 bits (379), Expect = 1e-44
 Identities = 47/76 (61%), Positives = 59/76 (77%), Gaps = 3/76 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY TLG+ + AS +EIK AYR+ A +YHPD NKEPGA EKFKEI+ AY+VLSD +KR +
Sbjct: 4   DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63

Query: 138 YDQYGEAGVKSTVGGG 153
           +D+YGE G+K   G G
Sbjct: 64  FDRYGEEGLK---GSG 76

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score =  145 bits (368), Expect = 6e-43
 Identities = 39/73 (53%), Positives = 50/73 (68%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKK 134
           +SGDYY  LGV + AS +++K AYR+LA ++HPD N  PGATE FK I  AY VLS+ +K
Sbjct: 5   SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEK 64

Query: 135 RAMYDQYGEAGVK 147
           R  YDQ+G     
Sbjct: 65  RKQYDQFGSGPSS 77

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score =  140 bits (355), Expect = 6e-41
 Identities = 40/76 (52%), Positives = 48/76 (63%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
            YY  LGVPKSAS ++IK A+ KLA +YHPD NK P A  KF+EI+ AYE LSD  +R  
Sbjct: 8   SYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKE 67

Query: 138 YDQYGEAGVKSTVGGG 153
           YD  G +   S  G  
Sbjct: 68  YDTLGHSAFTSGKGQS 83

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score =  139 bits (353), Expect = 1e-40
 Identities = 43/96 (44%), Positives = 55/96 (57%), Gaps = 2/96 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKR 135
            YY  L VP+SAS  +IK AYR+ A Q+HPD N +    A +KFKE++ AYEVLSD  KR
Sbjct: 3   SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62

Query: 136 AMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGP 171
            +YD+YG  G+  T  G S A   +     E     
Sbjct: 63  EIYDRYGREGLTGTGTGPSRAEAGSGGPGLEHHHHH 98

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score =  140 bits (354), Expect = 1e-40
 Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 11/110 (10%)

Query: 70  RSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEV 128
           RS+  +    Y  LG+ K+A+  +IK +YRKLA +YHPD N + P A +KFKEI+ A+ +
Sbjct: 10  RSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAI 69

Query: 129 LSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPG 178
           L+D  KR +YD+YG  G+      G         +   T+F    G   G
Sbjct: 70  LTDATKRNIYDKYGSLGLYVAEQFG--------EENVNTYF--VSGPSSG 109

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score =  138 bits (350), Expect = 5e-40
 Identities = 49/100 (49%), Positives = 61/100 (61%), Gaps = 2/100 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LGV K+A  +EI+ AY++LA +YHPD N+ +  A  KFKEI  AYEVL+D +KRA
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPF-DLFETFFGPSMGG 175
            YDQYG A  +    GG        F D+F   FG   GG
Sbjct: 64  AYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFGG 103

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score =  140 bits (355), Expect = 2e-39
 Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 26/152 (17%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRA 136
           ++Y+ LGV K+AS +EI+ A++KLA + HPD N   P A   F +I+ AYEVL D+  R 
Sbjct: 3   NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGE 196
            YD+YGE G++   GG         ++ +  +                  R         
Sbjct: 63  KYDKYGEKGLEDNQGGQ--------YESWSYYRYDFGIYDDDPEIITLERRE-------- 106

Query: 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVC 228
                    F  ++   E  F   +   C  C
Sbjct: 107 ---------FDAAVNSGELWFVNFYSPGCSHC 129

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score =  134 bits (339), Expect = 1e-38
 Identities = 37/79 (46%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
             Y  LGV  SA+ +E+K  YRK A +YHPD     G TEKFKEIS A+E+L+D +KR +
Sbjct: 9   KLYDLLGVSPSANEQELKKGYRKAALKYHPDKP--TGDTEKFKEISEAFEILNDPQKREI 66

Query: 138 YDQYGEAGVKSTVGGGSSA 156
           YDQYG    +S        
Sbjct: 67  YDQYGLEAARSGGPSFGPG 85

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104

 Score =  134 bits (340), Expect = 1e-38
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 4/106 (3%)

Query: 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
           G      + L F+++  G  KEF ++ ++TCE C G G + G+K++ C  CGG G     
Sbjct: 1   GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGME-TI 59

Query: 255 DQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVK 300
           +    G F   S C  CGG G +I   C  C G G+ + KK     
Sbjct: 60  NT---GPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRSGPS 102

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score =  133 bits (338), Expect = 2e-38
 Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 2/81 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKR 135
           +YY  LGV  SAS ++IK AYRKLA ++HPD N +    A +KFK +S AYEVLSD KKR
Sbjct: 10  NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69

Query: 136 AMYDQYGEAGVKSTVGGGSSA 156
           ++YD+ G    ++  G    +
Sbjct: 70  SLYDRAGCDSWRAGGGASGPS 90

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score =  133 bits (336), Expect = 2e-38
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 1/70 (1%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LGVP++AS KEIK AY +LA++YHPD NK +P A EKF +++ AYEVLSD+ KR 
Sbjct: 8   DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67

Query: 137 MYDQYGEAGV 146
            YD YG    
Sbjct: 68  QYDAYGSGPS 77

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score =  132 bits (334), Expect = 5e-38
 Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 2/72 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKR 135
           DYY  L VP+ AS + IK AYRKLA ++HPD N E    A  +FK+++ AYEVLSD KKR
Sbjct: 10  DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69

Query: 136 AMYDQYGEAGVK 147
            +YD+YG     
Sbjct: 70  DIYDRYGSGPSS 81

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score =  133 bits (336), Expect = 6e-38
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LG  + +S ++I A ++  A + HPD + E P A E F+++  A E+L++++ RA
Sbjct: 21  DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMG 174
            YD +  + +        +       D  +T  GPS G
Sbjct: 81  RYDHWRRSQMSMPFQQWEAL-----NDSVKT-SGPSSG 112

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score =  130 bits (329), Expect = 2e-37
 Identities = 39/66 (59%), Positives = 47/66 (71%), Gaps = 2/66 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
            YY  LGV   AS  E+K AYRK+A ++HPD N  P   E+FK+IS AYEVLSD+KKR +
Sbjct: 9   GYYDVLGVKPDASDNELKKAYRKMALKFHPDKN--PDGAEQFKQISQAYEVLSDEKKRQI 66

Query: 138 YDQYGE 143
           YDQ GE
Sbjct: 67  YDQGGE 72

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170

 Score =  133 bits (338), Expect = 2e-37
 Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 1/146 (0%)

Query: 284 KCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQR 343
              G      K  I +++ PG   G+ +    +GD  P+ G    L   +  +  P  +R
Sbjct: 25  GRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKR 84

Query: 344 DGIDLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPGTQPGDVLVLAKKGAPKLNKPS 402
           DG DL  T+ +S+ ++++G    ++T++G    L      QP        +G P    PS
Sbjct: 85  DGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPS 144

Query: 403 IRGDHLFTVKVTIPNRISAKERELLE 428
            RG+ +   KV  P  ++  ++  ++
Sbjct: 145 QRGNLIVKYKVDYPISLNDAQKRAID 170

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score =  129 bits (326), Expect = 1e-36
 Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 62  RSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFK 120
             S+   G     +    Y  LGVP +A+  +IKAAY +    YHPD N     A E+F 
Sbjct: 3   SGSSGSQGDCSY-SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFT 61

Query: 121 EISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154
            IS AY VL     R  YD+   +       G  
Sbjct: 62  RISQAYVVLGSATLRRKYDRGLLSDEDLRGPGSG 95

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score =  129 bits (327), Expect = 1e-36
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 63  SSTYRFGRSVVCASGDYYATLGVPKSA-SGKEIKAAYRKLARQYHPDVNKEP----GATE 117
           S+   F   + C   + Y  L V +     +++  AYR LAR++HPD  K       A E
Sbjct: 1   SNAVGFAPELYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEE 60

Query: 118 KFKEISAAYEVLSDDKKRAMYDQYGEAG 145
           +F+ I+ AYE L DD+ +  YD Y +  
Sbjct: 61  RFRVIATAYETLKDDEAKTNYDYYLDHP 88

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score =  129 bits (326), Expect = 5e-36
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-------EPGATEKFKEISAAYEVLS 130
           D+Y+ LG   SA+  ++K  Y+KL   YHPD               +KF EI  A+++L 
Sbjct: 11  DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70

Query: 131 DDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDL---FETFFGPSMGGF 176
           +++ +  YD          VG   +              +F+     G 
Sbjct: 71  NEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGG 119

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180

 Score =  130 bits (328), Expect = 7e-36
 Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 3/162 (1%)

Query: 271 CGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLY 330
             G+ + I    ++         +  ++V++ PG   G+ L   GEGD    G  PGDL 
Sbjct: 18  YLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLV 77

Query: 331 VYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPG--TQPGDVL 388
           + +  +  P   RD   L   ++I  + A+ G    V T++    LQ+P      P    
Sbjct: 78  LIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDN-RNLQIPIKEIVNPKTRK 136

Query: 389 VLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEEL 430
           ++  +G P  N+P  +GD +    +  P  ++ ++++L++E 
Sbjct: 137 IVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEA 178

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score =  125 bits (316), Expect = 2e-35
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-------EPGATEKFKEISAAYEVLS 130
           D+Y+ LG   SA+  ++K  Y+KL   YHPD               +KF EI  A+++L 
Sbjct: 17  DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76

Query: 131 DDKKRAMYDQYGEAG 145
           +++ +  YD      
Sbjct: 77  NEETKKKYDLQRSGP 91

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score =  124 bits (312), Expect = 9e-35
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 53  GSKLNSSNARSSTYRFGRSV--VCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVN 110
           GS  +S ++ S T     ++  +  S D +  LGV   AS  E+  AYRKLA   HPD  
Sbjct: 1   GSSGSSGSSASFTKEQADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKC 60

Query: 111 KEPGATEKFKEISAAYEVLSDDKKRAMYD 139
             PG+ + FK +  A   L  + K     
Sbjct: 61  VAPGSEDAFKAVVNARTALLKNIKSGPSS 89

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score =  119 bits (301), Expect = 6e-33
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 78  DYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
                LG+ +SA G    ++ AY K  +++HPD     G  EK K+++  Y+ + D  K 
Sbjct: 9   QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG---GDEEKMKKMNTLYKKMEDGVKY 65

Query: 136 AMYDQYGEAGVKSTVGGGSSAYTTNPFDLF 165
           A    +G     + +    +      ++ F
Sbjct: 66  AHQPDFGGFWDATEIPTYGTDEWEQWWNAF 95

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score =  121 bits (304), Expect = 1e-32
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 19/99 (19%)

Query: 78  DYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
                LG+ +SA G    ++ AY K  +++HPD     G  EK K+++  Y+ + D  K 
Sbjct: 12  QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG---GDEEKMKKMNTLYKKMEDGVKY 68

Query: 136 AMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMG 174
           A    +G                 +  ++F +   P + 
Sbjct: 69  AHQPDFGGFW--------------DATEVFASSLNPGVD 93

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181

 Score =  117 bits (295), Expect = 4e-31
 Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 5/166 (3%)

Query: 267 VCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPP 326
           +   C  + + IS       G+      K + ++V  G   G+ +    EGD       P
Sbjct: 16  IYSGCTKKMK-ISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIP 73

Query: 327 GDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPG--TQP 384
            D+   L  +     +RDG D+     IS  +A+ G  V V T++G   + V      +P
Sbjct: 74  ADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDG-RTIPVVFKDVIRP 132

Query: 385 GDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEEL 430
           G    +  +G P    P  RGD +   +V  P RI    R +LE++
Sbjct: 133 GMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQV 178

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score =  113 bits (285), Expect = 5e-31
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKR 135
           +  + +         E K   R+L  ++HPD N E    A E FK +      L    K+
Sbjct: 17  EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQ 73

Query: 136 AMYDQYGEAGVKST 149
           A  DQ  +   + T
Sbjct: 74  AFLDQNADRASRRT 87

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  123 bits (309), Expect = 3e-30
 Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 6/173 (3%)

Query: 69  GRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYE 127
           G        ++Y+ LGV K+AS +EI+ A++KLA + HPD N   P A   F +I+ AYE
Sbjct: 13  GHIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYE 72

Query: 128 VLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTR 187
           VL D+  R  YD+YGE G++   GG   +++   +D       P +              
Sbjct: 73  VLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNS 132

Query: 188 RRSTVTK----GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMG 236
                      G    +D+   + E     +    +  +  C          G
Sbjct: 133 GELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVN-CGDDRMLCRMKG 184

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Length = 79

 Score =  102 bits (257), Expect = 4e-27
 Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 4/81 (4%)

Query: 212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSC 271
           G  KE  +  LE C+VC G+GAK G++ + C TC G GQV +  Q   G F+    CP C
Sbjct: 1   GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQV-QMRQ---GFFAVQQTCPHC 56

Query: 272 GGEGEVISEYCRKCSGEGRIR 292
            G G +I + C KC G GR+ 
Sbjct: 57  QGRGTLIKDPCNKCHGHGRVE 77

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 98.2 bits (245), Expect = 2e-22
 Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDK 133
           DYY  LGV ++A  +EI  AYRKLA Q+HPD  +       A +KF +I+AA EVLSD +
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442

Query: 134 KRAMYDQ 140
            R  +D 
Sbjct: 443 MRKKFDD 449

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109

 Score = 86.5 bits (215), Expect = 8e-21
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 342 QRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKP 401
              G +L   + ++  +A +G  V V T++    L VPPG+Q G  L +  KG       
Sbjct: 8   DIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLV---SK 64

Query: 402 SIRGDHLFTVKVTIPNRISAKERELLEELASLRNT 436
           +  GD    +K+ +P +   K REL ++LA+   +
Sbjct: 65  THTGDLFAVIKIVMPTKPDEKARELWQQLAAAEAS 99

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109

 Score = 49.9 bits (120), Expect = 5e-08
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 297 IKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVE 336
           I + VPPG   G  LR+ G+G         GDL+  + + 
Sbjct: 40  ILLTVPPGSQAGQRLRIKGKG--LVSKTHTGDLFAVIKIV 77

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 86.6 bits (214), Expect = 5e-20
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 78  DYYATLGVPKSASG-------KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLS 130
            +Y                    ++  YR+L  Q+HPD+      +E+   ++ AY  L 
Sbjct: 12  TFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMA--QQGSEQSSTLNQAYHTLK 69

Query: 131 DDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFD-LFETF 168
           D  +R+ Y       +  T    S+  TT+    L +  
Sbjct: 70  DPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVL 108

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 85.8 bits (212), Expect = 6e-20
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 78  DYYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPGATEK------FKEISAAYEVL 129
           DY+   G+P       + +   ++ L RQYHPD        E+         I+ A++ L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 130 SDDKKRAMYD 139
                RA Y 
Sbjct: 62  RHPLMRAEYL 71

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 75.0 bits (184), Expect = 4e-17
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 78  DYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
                L +P+   G    ++ AY++ +   HPD     G+    +E+++ +     +   
Sbjct: 12  RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG---GSHALMQELNSLWGTFKTEVYN 68

Query: 136 AMYDQYG 142
              +  G
Sbjct: 69  LRMNLGG 75

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 71.3 bits (174), Expect = 2e-14
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 78  DYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPGATEK------FKEISAAYEVL 129
           DY++ +   +S      +++  Y++L R  HPD   +   TEK         ++ AY+ L
Sbjct: 44  DYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTL 103

Query: 130 SDDKKRAMYD 139
                R +Y 
Sbjct: 104 LAPLSRGLYL 113

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 68.3 bits (166), Expect = 1e-13
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK----EPGATEKFKEISAAYEVLSDDK 133
             +  +G+    + +++K  YRK     HPD       E  A   F E++ A+    +  
Sbjct: 118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 177

Query: 134 KRAMY 138
           ++ +Y
Sbjct: 178 QKPLY 182

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 60.8 bits (148), Expect = 3e-12
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 78  DYYATLGVPKSA-SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
           +    L + ++  + K++K  +RK+    HPD     G+     +I+ A + L      
Sbjct: 15  EALQILNLTENTLTKKKLKEVHRKIMLANHPDKG---GSPFLATKINEAKDFLEKRGIS 70

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 342 QRDGIDLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPG--TQPGDVLVLAKKGAPKL 398
           +RDG DL     I  L AI G    ++ V G   ++ + PG    PG   V+  KG P  
Sbjct: 3   KRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIP 62

Query: 399 NKPSIRGDHLFTVKVTIPNR--ISAKERELLEEL 430
                 G+ +    +  P     S +  + LEE+
Sbjct: 63  KYGG-YGNLIIKFTIKFPENHFTSEENLKKLEEI 95

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 76  SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEIS-AAYEVLSDDKK 134
           SG  +  + +     G  ++ +Y++     HPD  ++ GA+   K ++   +E+L +   
Sbjct: 39  SGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQE--- 95

Query: 135 RAMYDQYGEAG 145
            A +D +   G
Sbjct: 96  -A-WDHFNTLG 104

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 50.4 bits (120), Expect = 3e-08
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 80  YATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSD 131
           +  +G+    + +++K  YRK     HP           A   F E++ A+    +
Sbjct: 36  WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	466
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	100.0
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	100.0
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	100.0
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	100.0
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	100.0
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	99.93
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	99.9
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.86
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.85
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.83
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.82
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.81
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.81
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.81
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.8
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.8
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.8
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.8
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.79
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.79
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.78
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.78
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.76
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.73
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.73
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.72
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.68
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.68
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.67
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.65
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.63
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.62
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.6
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.6
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.58
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.57
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.56
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.56
2guz_A	71	Mitochondrial import inner membrane translocase su	99.56
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.52
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.49
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	99.44
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	99.11
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	99.04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.85
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	98.78
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	98.77
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	98.72
2guz_B	65	Mitochondrial import inner membrane translocase su	98.71
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	98.44
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.78
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.75
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	97.52
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	97.16
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.08
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.01
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.74
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	88.61

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=100.00  E-value=2.2e-63  Score=500.40  Aligned_cols=285  Identities=33%  Similarity=0.564  Sum_probs=160.0

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCC--
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG--  153 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~--  153 (466)
                      ..|||+||||+++|+.+|||+|||+||++||||+++++.++++|++|++||++|+||.+|+.||+|+......+.+..  
T Consensus        27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~~~  106 (329)
T 3lz8_A           27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQRQ  106 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCcccccc
Confidence            479999999999999999999999999999999998888899999999999999999999999998543211111100  


Q ss_pred             --CCCCC-CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccC
Q 012301          154 --SSAYT-TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG  230 (466)
Q Consensus       154 --~~~~~-~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~G  230 (466)
                        .++|. .++.|+|+.|||++  +.        +. .+....++.|+.++|.|+|+|+|+|+++++.+.+.+.|    |
T Consensus       107 ~~~~~f~~~~f~diF~~~Fg~~--g~--------~~-~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~----g  171 (329)
T 3lz8_A          107 THEQSYSQQDFDDIFSSMFGQQ--AH--------QR-RRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN----V  171 (329)
T ss_dssp             -----------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC----S
T ss_pred             cccCCcCCCchhhhhHhhhcCc--CC--------CC-CCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec----C
Confidence              11121 23446777777531  10        00 01124578999999999999999999999998875522    1


Q ss_pred             cccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcE
Q 012301          231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI  310 (466)
Q Consensus       231 tG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~  310 (466)
                                       .|.+.                                      +...++++|+||+|+++|++
T Consensus       172 -----------------~G~v~--------------------------------------~~~~~~l~V~IP~Gv~~G~~  196 (329)
T 3lz8_A          172 -----------------FGMIE--------------------------------------SETPKTLNVKIPAGVVDGQR  196 (329)
T ss_dssp             -----------------CC-CC--------------------------------------EEEEEEEEEEECTTCCTTCE
T ss_pred             -----------------CeEEE--------------------------------------EecceEEEEeCCCCCCCCCE
Confidence                             12111                                      12246899999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEE
Q 012301          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVL  390 (466)
Q Consensus       311 i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i  390 (466)
                      |+|+|+|++++.++.+|||||+|+|++|+.|+|+|+||+++++|+|+|||+|++++|+||||+++|+||++++||++++|
T Consensus       197 Irl~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~v~l~ip~gt~~g~~~rl  276 (329)
T 3lz8_A          197 IRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRI  276 (329)
T ss_dssp             EEESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEE
T ss_pred             EEEcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCCEEEEECCCCCCCCEEEE
Confidence            99999999987788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhh
Q 012301          391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL  433 (466)
Q Consensus       391 ~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~  433 (466)
                      +|+|||..   +.+|||||+|+|+||++|+++|+++|++|+++
T Consensus       277 ~G~GmP~~---~~rGDL~v~~~V~~P~~l~~~q~~~l~~~~~~  316 (329)
T 3lz8_A          277 KGKGLVSK---THTGDLFAVIKIVMPTKPDEKARELWQQLAAA  316 (329)
T ss_dssp             TTCSCBCS---SCBCCEEEEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred             cCCCCCCC---CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            99999975   36999999999999999999999999999983

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=100.00  E-value=7.7e-57  Score=437.02  Aligned_cols=233  Identities=27%  Similarity=0.509  Sum_probs=208.5

Q ss_pred             cccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCcccee-eeeeCCC
Q 012301          192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFS-QVSVCPS  270 (466)
Q Consensus       192 ~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~~  270 (466)
                      +.++.|++++|.|+|+|+|+|+++++.+.+.+.|+.|+|+|...+. ..+|+.|+|+|+++..+++++ +++ ...+|+.
T Consensus         8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~   85 (248)
T 1nlt_A            8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDV   85 (248)
T ss_dssp             CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSS-EEEEEECSCTT
T ss_pred             CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCc-eEEEEEEcCCC
Confidence            3578999999999999999999999999999999999999999887 499999999999988777777 554 4589999


Q ss_pred             CCCccEEE--eeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 012301          271 CGGEGEVI--SEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL  348 (466)
Q Consensus       271 C~G~G~~~--~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL  348 (466)
                      |+|.|+++  ++.|..|+|.|.+.+.++++|+||+|+.+|++|+|+|+|++.+ ++.+|||||+|++++|+.|+|+|+||
T Consensus        86 C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~-~g~~GDl~v~i~v~~h~~F~R~G~DL  164 (248)
T 1nlt_A           86 CHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHKSFKRDGDDL  164 (248)
T ss_dssp             CSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCCSSCEEETTEE
T ss_pred             CCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCC-CCCcceEEEEEEEecCccceeeCCEE
Confidence            99999999  8999999999999999999999999999999999999999975 56899999999999999999999999


Q ss_pred             EEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCC--CccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCC--CCHHH
Q 012301          349 FSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNR--ISAKE  423 (466)
Q Consensus       349 ~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g--~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~--ls~~~  423 (466)
                      |++++|+|+|||+|++++|+||||+ ++|+||++  ++||++++|+|+|||..+++ .+|||||+|+|+||++  ||++|
T Consensus       165 ~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~-~~GDL~V~~~V~~P~~~~Ls~~q  243 (248)
T 1nlt_A          165 VYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHFTSEEN  243 (248)
T ss_dssp             EEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSC-SBCCEEEEEEEECCC--------
T ss_pred             EEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCC-CcCCEEEEEEEECCCCCCCCHHH
Confidence            9999999999999999999999996 78999998  99999999999999987665 6899999999999999  99999


Q ss_pred             HHHHH
Q 012301          424 RELLE  428 (466)
Q Consensus       424 ~~ll~  428 (466)
                      +++|+
T Consensus       244 ~~~l~  248 (248)
T 1nlt_A          244 LKKLE  248 (248)
T ss_dssp             -----
T ss_pred             HHhhC
Confidence            99885

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=100.00  E-value=1.3e-43  Score=328.36  Aligned_cols=177  Identities=25%  Similarity=0.369  Sum_probs=156.8

Q ss_pred             CCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCc
Q 012301          195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE  274 (466)
Q Consensus       195 g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~  274 (466)
                      +.|++++|.|||+|+|+|+++++.+.+                   .|..|                             
T Consensus         2 ~~d~~~~l~islee~~~G~~k~i~i~~-------------------~c~~c-----------------------------   33 (181)
T 3agx_A            2 DPPVTHDLRVSLEEIYSGCTKKMKISH-------------------KRLNP-----------------------------   33 (181)
T ss_dssp             ----CEEEEECHHHHHHCEEEEEEEEE-------------------EEECT-----------------------------
T ss_pred             CCCEEEEEEEEHHHhcCCcEEEEEEec-------------------ccCCC-----------------------------
Confidence            368999999999999999999987643                   12223                             


Q ss_pred             cEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEee
Q 012301          275 GEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISI  354 (466)
Q Consensus       275 G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~I  354 (466)
                                 +|.|.+.+.++++|+||+|+.+|++|+|+|+|++++ ++.+|||||+|++++|+.|+|+|+||++++.|
T Consensus        34 -----------~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~-~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~I  101 (181)
T 3agx_A           34 -----------DGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGSDVIYPARI  101 (181)
T ss_dssp             -----------TSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCS-SSCCCCEEEEEEECCCSSCEEETTEEEEEEEE
T ss_pred             -----------CCceEEEEeEEEEEEECCCccCCcEEEEeeccccCC-CCCcccEEEEEEEeccccceeeCCcEEEEEEc
Confidence                       333344557899999999999999999999999987 67899999999999999999999999999999


Q ss_pred             CHHhhhCCCEEEEeccCCe-EEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHH
Q 012301          355 SYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELA  431 (466)
Q Consensus       355 sl~eAl~G~~~~i~tldG~-~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~  431 (466)
                      +|+||++|++++|+||||+ ++|++|+++++|++++|+|+|||..++++.+|||||+|+|.||++||++|+++|++++
T Consensus       102 sl~eAllG~~i~v~tldG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~l~~~~  179 (181)
T 3agx_A          102 SLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL  179 (181)
T ss_dssp             EHHHHHHCEEEEEECTTSCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHHHHHHS
T ss_pred             CHHHHhCCCEEEeECCCCCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhc
Confidence            9999999999999999995 7899999999999999999999987766678999999999999999999999999997

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.4e-42  Score=321.27  Aligned_cols=176  Identities=21%  Similarity=0.422  Sum_probs=162.5

Q ss_pred             CCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCc
Q 012301          195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE  274 (466)
Q Consensus       195 g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~  274 (466)
                      +.|++++|.|||+|+|+|+++++.+.+.+.|..                                               
T Consensus         3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~-----------------------------------------------   35 (180)
T 2q2g_A            3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH-----------------------------------------------   35 (180)
T ss_dssp             -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT-----------------------------------------------
T ss_pred             CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC-----------------------------------------------
Confidence            679999999999999999999999998887741                                               


Q ss_pred             cEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEee
Q 012301          275 GEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISI  354 (466)
Q Consensus       275 G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~I  354 (466)
                                    |.+.+.++++|+||+|+++|++|+|+|+|+++..++.+|||||+|++++|+.|+|+|+||+++++|
T Consensus        36 --------------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~I  101 (180)
T 2q2g_A           36 --------------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTI  101 (180)
T ss_dssp             --------------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEEE
T ss_pred             --------------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEEc
Confidence                          223446889999999999999999999999965688999999999999999999999999999999


Q ss_pred             CHHhhhCCCEEEEeccCCe-EEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHH
Q 012301          355 SYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELA  431 (466)
Q Consensus       355 sl~eAl~G~~~~i~tldG~-~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~  431 (466)
                      +|+||++|++++|+||||+ ++|++|++++||++++|+|+|||..++++.+|||||+|+|.||++||++|+++|++++
T Consensus       102 sl~eAllG~~i~v~tldG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~~~  179 (180)
T 2q2g_A          102 PLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL  179 (180)
T ss_dssp             EHHHHHHCEEEEEECTTCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHHHHHHC
T ss_pred             CHHHHhCCCEEEeeCCCCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhc
Confidence            9999999999999999996 7899999999999999999999987766679999999999999999999999999986

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=100.00  E-value=2.7e-40  Score=303.29  Aligned_cols=169  Identities=22%  Similarity=0.449  Sum_probs=153.9

Q ss_pred             CceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCcc
Q 012301          196 EDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG  275 (466)
Q Consensus       196 ~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G  275 (466)
                      +|++++|.|||+|+|+|+++++.+.+..    +                   .|                          
T Consensus         1 ~d~~~~l~islee~~~G~~k~i~~~~~~----~-------------------~G--------------------------   31 (170)
T 1c3g_A            1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG----P-------------------HG--------------------------   31 (170)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEE----T-------------------TT--------------------------
T ss_pred             CCEEEEEEeEHHHhhCCcEEEEEEEEec----C-------------------CC--------------------------
Confidence            3789999999999999999999987641    0                   01                          


Q ss_pred             EEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeC
Q 012301          276 EVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISIS  355 (466)
Q Consensus       276 ~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Is  355 (466)
                                    .+ +.++++|+||+|+.+|++|+|+|+|++...++.+|||||+|++++|+.|+|+|+||+++++|+
T Consensus        32 --------------~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Is   96 (170)
T 1c3g_A           32 --------------AS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLS   96 (170)
T ss_dssp             --------------EE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCB
T ss_pred             --------------cE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcC
Confidence                          12 357899999999999999999999997777889999999999999999999999999999999


Q ss_pred             HHhhhCCCEEEEeccCCe-EEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHH
Q 012301          356 YLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLE  428 (466)
Q Consensus       356 l~eAl~G~~~~i~tldG~-~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~  428 (466)
                      |+||++|++++|+||||+ ++|++|+++++|++++|+|+|||..++++.+|||||+|+|.||++||++|+++|+
T Consensus        97 l~eAllG~~~~v~tldG~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~  170 (170)
T 1c3g_A           97 FKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID  170 (170)
T ss_dssp             HHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHHTC
T ss_pred             HHHHhCCCeEEeeCCCCCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHhhC
Confidence            999999999999999996 7899999999999999999999987766678999999999999999999999874

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=99.93  E-value=9.9e-26  Score=191.29  Aligned_cols=96  Identities=29%  Similarity=0.445  Sum_probs=90.5

Q ss_pred             EeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEEC
Q 012301          336 EEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTI  415 (466)
Q Consensus       336 ~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~  415 (466)
                      ++|+.|+|+|+||+++++|+|.||++|++++|+|+||.++|+||+++++|++++|+|+|||. .  +.+|||||+|+|.|
T Consensus         2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~~~v~ip~g~~~G~~~rl~G~G~p~-~--~~~GDL~v~~~V~~   78 (109)
T 3i38_A            2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVS-K--THTGDLFAVIKIVM   78 (109)
T ss_dssp             --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBC-S--SCBCCEEEEEEECC
T ss_pred             CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCCEEEeeCCCcCcCeEEEECCccCCC-C--CCCcCEEEEEEEEC
Confidence            68999999999999999999999999999999999999999999999999999999999998 3  26999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhhc
Q 012301          416 PNRISAKERELLEELASLR  434 (466)
Q Consensus       416 P~~ls~~~~~ll~~l~~~~  434 (466)
                      |++|+++|+++|++++++.
T Consensus        79 P~~Ls~~q~~~l~~l~~~~   97 (109)
T 3i38_A           79 PTKPDEKARELWQQLAAAE   97 (109)
T ss_dssp             CSSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHhhc
Confidence            9999999999999999874

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=99.90  E-value=5.7e-24  Score=183.93  Aligned_cols=94  Identities=29%  Similarity=0.420  Sum_probs=84.4

Q ss_pred             ccccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCC--CccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECC
Q 012301          340 GIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP  416 (466)
Q Consensus       340 ~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g--~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P  416 (466)
                      .|+|+|+||++++.|+|.||++|++++|+|+||+ +.|+||+|  +++|++++|+|+|||..+++ .+|||||+|+|.||
T Consensus         1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~-~~GDL~V~~~V~~P   79 (121)
T 1xao_A            1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKFP   79 (121)
T ss_dssp             CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC-------CCCEEEEEEEECC
T ss_pred             CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEECC
Confidence            4899999999999999999999999999999997 78999999  99999999999999987665 68999999999999


Q ss_pred             CC--CCHHHHHHHHHHHhhc
Q 012301          417 NR--ISAKERELLEELASLR  434 (466)
Q Consensus       417 ~~--ls~~~~~ll~~l~~~~  434 (466)
                      ++  |+++|+++|++++...
T Consensus        80 ~~~~ls~~q~~~l~~l~~~~   99 (121)
T 1xao_A           80 ENHFTSEENLKKLEEILPPR   99 (121)
T ss_dssp             CTTCSCHHHHHHHHHHSCCC
T ss_pred             CCCCCCHHHHHHHHHHcccc
Confidence            99  9999999999999644

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.86  E-value=6e-23  Score=172.66  Aligned_cols=97  Identities=48%  Similarity=0.796  Sum_probs=69.9

Q ss_pred             cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCC
Q 012301           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG  153 (466)
Q Consensus        75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~  153 (466)
                      |..|||+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||++|++++..+..++
T Consensus         1 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~   80 (103)
T 1bq0_A            1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGG   80 (103)
T ss_dssp             CCCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC---
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCC
Confidence            35789999999999999999999999999999999974 67889999999999999999999999999998877532111


Q ss_pred             CCCCC--CCCcCccccccCCC
Q 012301          154 SSAYT--TNPFDLFETFFGPS  172 (466)
Q Consensus       154 ~~~~~--~~~~d~f~~fFg~~  172 (466)
                       +++.  .++.++|++||+..
T Consensus        81 -~~~~~~~~~~~~f~~~f~~~  100 (103)
T 1bq0_A           81 -GGFGGGADFSDIFGDVFGDI  100 (103)
T ss_dssp             ---------------------
T ss_pred             -CCCCCCCCHHHHHHHHHHhh
Confidence             1111  13446677777643

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.85  E-value=1e-21  Score=156.33  Aligned_cols=73  Identities=62%  Similarity=1.042  Sum_probs=69.2

Q ss_pred             cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcc
Q 012301           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (466)
Q Consensus        75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~  147 (466)
                      |..|||+||||+++|+.+|||+|||+|++++|||+++.+.+.+.|++|++||++|+||.+|+.||++|.+++.
T Consensus         1 m~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   73 (77)
T 1hdj_A            1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK   73 (77)
T ss_dssp             CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence            4579999999999999999999999999999999998888999999999999999999999999999988765

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.83  E-value=6.2e-21  Score=155.72  Aligned_cols=77  Identities=49%  Similarity=0.827  Sum_probs=70.4

Q ss_pred             cccccccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccC
Q 012301           69 GRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG  145 (466)
Q Consensus        69 ~~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~  145 (466)
                      .+.......|||+||||+++|+.+|||+|||+|+++||||+++.+.+.++|++|++||++|+||.+|+.||++|+..
T Consensus         9 ~~~~~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A            9 LQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             CCCCCSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             hhhhccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            33355567899999999999999999999999999999999988889999999999999999999999999998653

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=8e-21  Score=155.09  Aligned_cols=73  Identities=56%  Similarity=0.914  Sum_probs=68.6

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCccc
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~  148 (466)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.+.+.++|++|++||++|+||.+|+.||.+|.+++..
T Consensus         6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   78 (88)
T 2ctr_A            6 SGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTS   78 (88)
T ss_dssp             CCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccc
Confidence            4689999999999999999999999999999999988788999999999999999999999999999877653

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=5.7e-21  Score=160.83  Aligned_cols=103  Identities=34%  Similarity=0.697  Sum_probs=93.6

Q ss_pred             CCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCc
Q 012301          195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE  274 (466)
Q Consensus       195 g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~  274 (466)
                      |.|+.++|.|+|+|+|+|.+++|.+.+.+.|+.|+|+|...+....+|+.|+|+|++...+    |+|++..+|+.|+|.
T Consensus         1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~   76 (104)
T 2ctt_A            1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT----GPFVMRSTCRRCGGR   76 (104)
T ss_dssp             CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE----TTEEEEEECSSSSSS
T ss_pred             CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe----CCEEEEEECCcCCCc
Confidence            3578899999999999999999999999999999999999888889999999999886643    667777899999999


Q ss_pred             cEEEeeeeeeccCceEEEeeeEEEEEc
Q 012301          275 GEVISEYCRKCSGEGRIRLKKNIKVKV  301 (466)
Q Consensus       275 G~~~~~~C~~C~G~G~v~~~~~l~V~I  301 (466)
                      |++++++|..|+|.|.+.+.++|+|+|
T Consensus        77 G~~i~~~C~~C~G~G~v~~~k~l~V~~  103 (104)
T 2ctt_A           77 GSIIISPCVVCRGAGQAKQKKRSGPSS  103 (104)
T ss_dssp             SEECSSCCSSSSSCSEECCCCSSCCSC
T ss_pred             ceECCCcCCCCCCeeEEEEEEEEEEEc
Confidence            999999999999999999888887764

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=2.4e-20  Score=149.03  Aligned_cols=70  Identities=61%  Similarity=1.032  Sum_probs=65.5

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccC
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG  145 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~  145 (466)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||++|..+
T Consensus         6 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            6 SGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             CSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            5689999999999999999999999999999999874 678899999999999999999999999998654

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=1.5e-20  Score=149.98  Aligned_cols=70  Identities=56%  Similarity=0.962  Sum_probs=66.5

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccC
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG  145 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~  145 (466)
                      ..|||+||||+++|+.+|||+|||+|+++||||++..+++.+.|++|++||++|+||.+|+.||++|.++
T Consensus         6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             SCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            4689999999999999999999999999999999988888999999999999999999999999998764

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.80  E-value=2.5e-20  Score=146.77  Aligned_cols=70  Identities=54%  Similarity=0.874  Sum_probs=62.3

Q ss_pred             cccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhccccccccc
Q 012301           73 VCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEA  144 (466)
Q Consensus        73 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~  144 (466)
                      |....|||+||||+++|+.++||+|||+|+++||||+++.  +.+.|++|++||++|+||.+|+.||++|++
T Consensus         4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   73 (73)
T 2och_A            4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEKKRQIYDQGGEE   73 (73)
T ss_dssp             --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT--CHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred             ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC--HHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence            4556799999999999999999999999999999999853  468999999999999999999999999863

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.80  E-value=3e-20  Score=149.58  Aligned_cols=71  Identities=54%  Similarity=0.870  Sum_probs=65.5

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhchhhhhcccccccccCc
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV  146 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~  146 (466)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++..  .+.+.|++|++||++|+||.+|+.||++|..++
T Consensus         8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~   80 (82)
T 2ej7_A            8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS   80 (82)
T ss_dssp             SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred             CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence            46899999999999999999999999999999998753  577899999999999999999999999997654

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=3.7e-20  Score=157.93  Aligned_cols=74  Identities=31%  Similarity=0.562  Sum_probs=68.5

Q ss_pred             ccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhhhhcccccccccCcc
Q 012301           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (466)
Q Consensus        74 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~  147 (466)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++|.+++.
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~   91 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS   91 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence            44689999999999999999999999999999999997 577899999999999999999999999999977653

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=4.6e-20  Score=151.77  Aligned_cols=73  Identities=52%  Similarity=0.797  Sum_probs=67.0

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhchhhhhcccccccccCccc
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~  148 (466)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++..  .+.++|++|++||++|+||.+|+.||++|.+++..
T Consensus         8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   82 (92)
T 2dmx_A            8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA   82 (92)
T ss_dssp             CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred             CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence            45899999999999999999999999999999998753  57889999999999999999999999999877654

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.79  E-value=3.4e-20  Score=152.59  Aligned_cols=75  Identities=49%  Similarity=0.798  Sum_probs=67.7

Q ss_pred             ccccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCccc
Q 012301           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (466)
Q Consensus        72 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~  148 (466)
                      .+.+..|||+||||+++|+.+|||+|||+|+++||||+++  ...++|++|++||++|+||.+|+.||++|.+++..
T Consensus         3 ~m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~   77 (92)
T 2o37_A            3 AMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPT--GDTEKFKEISEAFEILNDPQKREIYDQYGLEAARS   77 (92)
T ss_dssp             -CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTT--CCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred             ccccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--ChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence            3456789999999999999999999999999999999985  34679999999999999999999999999887654

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.79  E-value=6.5e-20  Score=152.85  Aligned_cols=71  Identities=54%  Similarity=0.899  Sum_probs=64.1

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhchhhhhcccccccccCcc
Q 012301           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (466)
Q Consensus        77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~  147 (466)
                      .|||+||||+++|+.+|||+|||+|+++||||+++..  .+.+.|++|++||++|+||.+|+.||.+|.+++.
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~   74 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT   74 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            5899999999999999999999999999999998753  4788999999999999999999999999987765

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.78  E-value=8e-20  Score=155.07  Aligned_cols=76  Identities=45%  Similarity=0.801  Sum_probs=69.4

Q ss_pred             ccccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcc
Q 012301           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (466)
Q Consensus        72 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~  147 (466)
                      ......|||+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||++|..++.
T Consensus        12 ~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~   88 (109)
T 2ctw_A           12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY   88 (109)
T ss_dssp             TTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred             cCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence            44556899999999999999999999999999999999974 67889999999999999999999999999987654

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=2.2e-19  Score=149.81  Aligned_cols=69  Identities=41%  Similarity=0.583  Sum_probs=63.7

Q ss_pred             ccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhhhhccccccc
Q 012301           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (466)
Q Consensus        74 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g  142 (466)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||+..
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l   83 (99)
T 2yua_A           14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL   83 (99)
T ss_dssp             SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred             CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence            34579999999999999999999999999999999996 4678899999999999999999999999853

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.76  E-value=1.8e-19  Score=148.71  Aligned_cols=69  Identities=32%  Similarity=0.570  Sum_probs=63.4

Q ss_pred             ccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------cchHHHHHHHHHHHHHhchhhhhccccccc
Q 012301           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-------PGATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (466)
Q Consensus        74 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-------~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g  142 (466)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++.       +.+.++|++|++||++|+||.+|+.||.+.
T Consensus        13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   88 (94)
T 1wjz_A           13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            346799999999999999999999999999999999863       457789999999999999999999999975

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.73  E-value=1.1e-18  Score=148.09  Aligned_cols=72  Identities=38%  Similarity=0.631  Sum_probs=66.0

Q ss_pred             ccccCcccchhcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC----cchHHHHHHHHHHHHHhchhhhhcccccccc
Q 012301           72 VVCASGDYYATLGVPKSA-SGKEIKAAYRKLARQYHPDVNKE----PGATEKFKEISAAYEVLSDDKKRAMYDQYGE  143 (466)
Q Consensus        72 ~~~~~~~~Y~vLgv~~~a-s~~eIk~ayr~l~~~~HPD~~~~----~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~  143 (466)
                      ......|||+||||+++| +.+|||+|||+|+++||||+++.    +.+.+.|++|++||++|+||.+|+.||+++.
T Consensus        10 ~~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~   86 (109)
T 2qsa_A           10 LYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD   86 (109)
T ss_dssp             STTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            445578999999999999 99999999999999999999875    5678999999999999999999999999874

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=3e-18  Score=140.35  Aligned_cols=63  Identities=38%  Similarity=0.524  Sum_probs=60.0

Q ss_pred             cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcc
Q 012301           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM  137 (466)
Q Consensus        75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~  137 (466)
                      ...|||+||||+++|+.+|||+|||+|+++||||+++.+++.++|++|++||++|+|+.+|+.
T Consensus        25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence            468999999999999999999999999999999999888899999999999999999999874

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.72  E-value=2.7e-18  Score=161.43  Aligned_cols=73  Identities=47%  Similarity=0.835  Sum_probs=68.1

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhhhhcccccccccCcccc
Q 012301           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKST  149 (466)
Q Consensus        77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~  149 (466)
                      .|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++|.+++...
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~   75 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN   75 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccccc
Confidence            58999999999999999999999999999999996 56789999999999999999999999999998877643

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.68  E-value=2.1e-17  Score=131.90  Aligned_cols=65  Identities=15%  Similarity=0.305  Sum_probs=58.8

Q ss_pred             cccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccC
Q 012301           77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG  145 (466)
Q Consensus        77 ~~~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~  145 (466)
                      .++|+||||+++  ++.+|||+|||+|+++||||++.   +.++|++|++||++|+|+.+|.. |.||..+
T Consensus        11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~---~~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~   77 (79)
T 1faf_A           11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG---SHALMQELNSLWGTFKTEVYNLR-MNLGGTG   77 (79)
T ss_dssp             HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC---CHHHHHHHHHHHHHHHHHHHHHT-TCCSSCC
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC---CHHHHHHHHHHHHHHhhHHHHHH-HhcCCcc
Confidence            579999999999  99999999999999999999974   46899999999999999999987 5577654

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.68  E-value=6.1e-18  Score=144.22  Aligned_cols=65  Identities=31%  Similarity=0.510  Sum_probs=60.5

Q ss_pred             CcccchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccc
Q 012301           76 SGDYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGE  143 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~  143 (466)
                      ..+||+||||+++|+.  ++||+|||+|++++|||+++.   .++|++|++||+||+||.+|+.||.+|.
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            4589999999999999  999999999999999999864   5789999999999999999999999874

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.67  E-value=2.7e-17  Score=148.18  Aligned_cols=69  Identities=32%  Similarity=0.549  Sum_probs=62.7

Q ss_pred             cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHHHHHHhchhhhhcccccccc
Q 012301           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG-------ATEKFKEISAAYEVLSDDKKRAMYDQYGE  143 (466)
Q Consensus        75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~-------~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~  143 (466)
                      ...|||+||||+++|+.++||+|||+|++++|||+++...       +.+.|++|++||++|+||.+|+.||..+.
T Consensus         8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~   83 (155)
T 2l6l_A            8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC   83 (155)
T ss_dssp             CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred             CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            3569999999999999999999999999999999987542       56899999999999999999999998663

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.65  E-value=1.4e-17  Score=151.50  Aligned_cols=65  Identities=29%  Similarity=0.453  Sum_probs=58.0

Q ss_pred             CcccchhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccc
Q 012301           76 SGDYYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGE  143 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as--~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~  143 (466)
                      ..|||+||||+++|+  .+|||+|||++|+++|||++++   .++|++|++||++|+||.+|+.||+||.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            468999999999998  6999999999999999999864   4789999999999999999999999995

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.63  E-value=6.9e-17  Score=131.41  Aligned_cols=62  Identities=23%  Similarity=0.220  Sum_probs=56.5

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhchhhhhcc
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAM  137 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~  137 (466)
                      ..++|+||||+++|+.+|||+|||+|+++||||+++.  +.+.++|++|++||++|+|...|..
T Consensus        15 ~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~   78 (88)
T 1iur_A           15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ   78 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence            4689999999999999999999999999999999975  3478999999999999999888744

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.62  E-value=2.1e-16  Score=144.66  Aligned_cols=63  Identities=21%  Similarity=0.412  Sum_probs=58.7

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHHHhchhhhhccc
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDKKRAMY  138 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~----~~~~f~~i~~Ay~vL~d~~~R~~y  138 (466)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++...    +.++|++|++||++|+|+.+|+.|
T Consensus       116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            369999999999999999999999999999999987543    788999999999999999999987

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.60  E-value=1e-16  Score=178.53  Aligned_cols=78  Identities=44%  Similarity=0.749  Sum_probs=40.9

Q ss_pred             ccccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhhhhcccccccccCcccc
Q 012301           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKST  149 (466)
Q Consensus        72 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~  149 (466)
                      ......|||+||||+++||.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++|++++...
T Consensus        16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~   94 (780)
T 3apo_A           16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN   94 (780)
T ss_dssp             -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred             CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence            4556789999999999999999999999999999999985 46788999999999999999999999999999887654

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.58  E-value=4.9e-16  Score=126.92  Aligned_cols=58  Identities=21%  Similarity=0.311  Sum_probs=51.8

Q ss_pred             ccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHHHhch
Q 012301           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSD  131 (466)
Q Consensus        74 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~----~~~~~f~~i~~Ay~vL~d  131 (466)
                      +...++|++|||++.||.+|||+|||++|++||||+++..    .+.++|++|++||+||.+
T Consensus        30 ~~~~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           30 WAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CTTCCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            3336899999999999999999999999999999998753    278899999999999976

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.57  E-value=9.7e-16  Score=140.00  Aligned_cols=65  Identities=28%  Similarity=0.455  Sum_probs=59.6

Q ss_pred             ccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhchhhhhccccccc
Q 012301           78 DYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (466)
Q Consensus        78 ~~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~R~~yd~~g  142 (466)
                      |||+||||++++  +.++||+|||+|+++||||+++...      +.++|..|++||++|+||.+|+.||...
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l   74 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence            799999999999  9999999999999999999987532      4578999999999999999999999864

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.56  E-value=4.8e-16  Score=130.82  Aligned_cols=61  Identities=13%  Similarity=0.262  Sum_probs=53.5

Q ss_pred             ccccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------chHHHHHHHHHHHHHhchhh
Q 012301           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--------GATEKFKEISAAYEVLSDDK  133 (466)
Q Consensus        72 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--------~~~~~f~~i~~Ay~vL~d~~  133 (466)
                      +.+...|||+|||++. ||.+|||+|||+++++||||+++.+        .++++|++|++||++|+|+.
T Consensus        36 ~l~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           36 ILWSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HhcccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            4455689999999996 9999999999999999999998632        25789999999999999975

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.56  E-value=1.4e-15  Score=142.88  Aligned_cols=65  Identities=22%  Similarity=0.425  Sum_probs=58.6

Q ss_pred             CcccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhchhhhhccccc
Q 012301           76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ  140 (466)
Q Consensus        76 ~~~~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~R~~yd~  140 (466)
                      ..|||+||||+++  ++.++||+|||+|+++||||+++...      +.++|++|++||++|+||.+|+.||.
T Consensus        42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~  114 (207)
T 3bvo_A           42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL  114 (207)
T ss_dssp             TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            4689999999986  79999999999999999999987432      45789999999999999999999996

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.56  E-value=1.5e-15  Score=118.62  Aligned_cols=57  Identities=21%  Similarity=0.281  Sum_probs=52.0

Q ss_pred             cccchhcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhc
Q 012301           77 GDYYATLGVPK-SASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRA  136 (466)
Q Consensus        77 ~~~Y~vLgv~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~  136 (466)
                      .++|+||||++ +|+.+|||+|||+|+++||||++   ++.+.|++|++||++|+|+..|+
T Consensus        14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~---g~~~~f~~i~~Aye~L~~~~~rk   71 (71)
T 2guz_A           14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG---GSPFLATKINEAKDFLEKRGISK   71 (71)
T ss_dssp             HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT---CCHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHhhhhhcC
Confidence            58999999999 79999999999999999999996   45679999999999999987663

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.52  E-value=3e-15  Score=137.81  Aligned_cols=65  Identities=25%  Similarity=0.496  Sum_probs=59.0

Q ss_pred             Ccccchhc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhccccccc
Q 012301           76 SGDYYATL------GVPK-SASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (466)
Q Consensus        76 ~~~~Y~vL------gv~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g  142 (466)
                      ..|||+||      |+++ +|+.++||+|||+|+++||||+++.  +.++|++|++||++|+||.+|+.||...
T Consensus        10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A           10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            46899999      4665 9999999999999999999999865  7788999999999999999999999843

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.49  E-value=1.9e-14  Score=139.11  Aligned_cols=118  Identities=22%  Similarity=0.484  Sum_probs=83.3

Q ss_pred             eeecccccCcccccC---------cceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec-------
Q 012301          222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-------  285 (466)
Q Consensus       222 ~~~C~~C~GtG~~~~---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C-------  285 (466)
                      ...|+.|+|+|....         ....+|+.|+|+|+++...          .+|+.|+|.|.+.+.+-.++       
T Consensus        54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~----------~~C~~C~G~g~~~~~~~l~V~Ip~G~~  123 (248)
T 1nlt_A           54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPK----------DRCKSCNGKKVENERKILEVHVEPGMK  123 (248)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTT----------SBCSSSTTSCEEEEEEEEEEEECTTCC
T ss_pred             CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccC----------CCCcccCCCceEeeeEEEEEEECCCcc
Confidence            378999999997532         2357899999999876311          78999999998765433332       


Q ss_pred             -------cCceE---------E---------------------------------------E-eeeEEEEEcCCC--CcC
Q 012301          286 -------SGEGR---------I---------------------------------------R-LKKNIKVKVPPG--VST  307 (466)
Q Consensus       286 -------~G~G~---------v---------------------------------------~-~~~~l~V~Ip~G--~~~  307 (466)
                             .|+|.         +                                       + +.+.++|+||+|  +++
T Consensus       124 ~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~  203 (248)
T 1nlt_A          124 DGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAP  203 (248)
T ss_dssp             TTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCST
T ss_pred             CCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCC
Confidence                   44432         1                                       2 234699999999  999


Q ss_pred             CcEEEEccCCCCCCCCCCCccEEEEEEEEeccc--cccCCcceE
Q 012301          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPG--IQRDGIDLF  349 (466)
Q Consensus       308 G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~--f~R~g~dL~  349 (466)
                      |++++|+|+|++...+...|||||+|+|..|..  ++.+..+|+
T Consensus       204 g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~~l  247 (248)
T 1nlt_A          204 GMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKKL  247 (248)
T ss_dssp             TCEEEETTCSCBCSSSCSBCCEEEEEEEECCC------------
T ss_pred             CeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHHhh
Confidence            999999999999754446799999999999987  777766654

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=99.44  E-value=9.8e-14  Score=110.47  Aligned_cols=78  Identities=44%  Similarity=0.981  Sum_probs=68.6

Q ss_pred             ceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEE
Q 012301          212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (466)
Q Consensus       212 G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v  291 (466)
                      |.+++|.+.+.+.|+.|+|+|........+|+.|+|+|+++..+    |+|+...+|+.|+|.|.++++.|..|+|.|.+
T Consensus         1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~   76 (79)
T 1exk_A            1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV   76 (79)
T ss_dssp             CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred             CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCEEeeECcCCCCccEECCCcCCCCCCeEEE
Confidence            56678889999999999999988777778999999999987643    77777789999999999999999999999987


Q ss_pred             Ee
Q 012301          292 RL  293 (466)
Q Consensus       292 ~~  293 (466)
                      .+
T Consensus        77 ~~   78 (79)
T 1exk_A           77 ER   78 (79)
T ss_dssp             EC
T ss_pred             ee
Confidence            53

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=99.11  E-value=3.1e-11  Score=101.98  Aligned_cols=83  Identities=25%  Similarity=0.412  Sum_probs=69.1

Q ss_pred             ccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCC
Q 012301          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (466)
Q Consensus       193 ~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~  272 (466)
                      +.|.|+.+++.|+|.||+.|++++|..-                                                    
T Consensus         9 R~G~DL~~~~~Isl~eAl~G~~i~v~tl----------------------------------------------------   36 (109)
T 3i38_A            9 IVGHNLEIVLPLAPWEAALGAKVTVPTL----------------------------------------------------   36 (109)
T ss_dssp             EETTEEEEEEEECHHHHHHCEEEEECCS----------------------------------------------------
T ss_pred             EECCEEEEEEEcCHHHHhCCCEEEEEcC----------------------------------------------------
Confidence            4688999999999999999998776521                                                    


Q ss_pred             CccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (466)
Q Consensus       273 G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~  350 (466)
                                           ++.++|+||+|+++|++++|+|+|++. .+ .+|||||+|+|..|..++.+..+++.
T Consensus        37 ---------------------dG~~~v~ip~g~~~G~~~rl~G~G~p~-~~-~~GDL~v~~~V~~P~~Ls~~q~~~l~   91 (109)
T 3i38_A           37 ---------------------KESILLTVPPGSQAGQRLRIKGKGLVS-KT-HTGDLFAVIKIVMPTKPDEKARELWQ   91 (109)
T ss_dssp             ---------------------SSCEEEEECTTCCTTCEEEETTCSCBC-SS-CBCCEEEEEEECCCSSCCHHHHHHHH
T ss_pred             ---------------------CCCEEEeeCCCcCcCeEEEECCccCCC-CC-CCcCEEEEEEEECCCCCCHHHHHHHH
Confidence                                 123689999999999999999999997 34 78999999999999988776655543

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=99.04  E-value=1.6e-10  Score=99.50  Aligned_cols=85  Identities=22%  Similarity=0.388  Sum_probs=66.4

Q ss_pred             ccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCC
Q 012301          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (466)
Q Consensus       193 ~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~  272 (466)
                      ++|.|+.+++.|+|.||+.|++++|..-                                                    
T Consensus         4 R~G~DL~~~~~Isl~eAllG~~i~v~tl----------------------------------------------------   31 (121)
T 1xao_A            4 RDGDDLVYEAEIDLLTAIAGGEFALEHV----------------------------------------------------   31 (121)
T ss_dssp             EETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------------------
T ss_pred             EECCeEEEEEEcCHHHHhCCCEEEEecC----------------------------------------------------
Confidence            4688999999999999999998776411                                                    


Q ss_pred             CccEEEeeeeeeccCceEEEeeeEEEEEcCCC--CcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccc--cccCCcce
Q 012301          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPG--VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPG--IQRDGIDL  348 (466)
Q Consensus       273 G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G--~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~--f~R~g~dL  348 (466)
                                          +.+.+.|+||+|  +++|++++|+|+|++...+..+|||||+|+|..|..  ++.++.++
T Consensus        32 --------------------dG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~~~   91 (121)
T 1xao_A           32 --------------------SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENLKK   91 (121)
T ss_dssp             --------------------TSCEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHHHH
T ss_pred             --------------------CCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHH
Confidence                                023578999999  999999999999999764446899999999999987  77666554


Q ss_pred             E
Q 012301          349 F  349 (466)
Q Consensus       349 ~  349 (466)
                      +
T Consensus        92 l   92 (121)
T 1xao_A           92 L   92 (121)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.85  E-value=1.5e-09  Score=110.16  Aligned_cols=64  Identities=50%  Similarity=0.723  Sum_probs=55.2

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHHHhchhhhhccccc
Q 012301           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSDDKKRAMYDQ  140 (466)
Q Consensus        77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~----~~~~~f~~i~~Ay~vL~d~~~R~~yd~  140 (466)
                      .++|++||+.+.++.++|+++|+++++++|||+.+.+    .+.++|++|.+||++|+|+++|+.||+
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            4899999999999999999999999999999998754    378899999999999999999999997

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=98.78  E-value=4.5e-09  Score=96.58  Aligned_cols=84  Identities=15%  Similarity=0.163  Sum_probs=68.8

Q ss_pred             ccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCC
Q 012301          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (466)
Q Consensus       193 ~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~  272 (466)
                      +.|.|+.+++.|+|.||+.|+++++..-                                                    
T Consensus        90 R~G~DL~~~~~Isl~eAllG~~i~v~tl----------------------------------------------------  117 (180)
T 2q2g_A           90 RDDCHLIMKVTIPLVRALTGFTCPVTTL----------------------------------------------------  117 (180)
T ss_dssp             EETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------------------
T ss_pred             EcCCEEEEEEEcCHHHHhCCCEEEeeCC----------------------------------------------------
Confidence            5789999999999999999988776521                                                    


Q ss_pred             CccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCC-CCCccEEEEEEEEeccccccCCcce
Q 012301          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRG-GPPGDLYVYLDVEEIPGIQRDGIDL  348 (466)
Q Consensus       273 G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g-~~~GDLiV~v~v~~~~~f~R~g~dL  348 (466)
                                          +.+.++|.||+|+++|++++++|+|++...+ +..|||||+|+|..|..++.+..++
T Consensus       118 --------------------dG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~  174 (180)
T 2q2g_A          118 --------------------DNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKL  174 (180)
T ss_dssp             --------------------TCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHH
T ss_pred             --------------------CCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHH
Confidence                                0135788999999999999999999996543 5689999999999998777665443

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=98.77  E-value=4.8e-09  Score=96.44  Aligned_cols=84  Identities=21%  Similarity=0.274  Sum_probs=69.0

Q ss_pred             ccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCC
Q 012301          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (466)
Q Consensus       193 ~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~  272 (466)
                      +.|.|+.+++.|+|.||+.|++++|..-                                                    
T Consensus        90 R~G~DL~~~~~Isl~eAllG~~i~v~tl----------------------------------------------------  117 (181)
T 3agx_A           90 RDGSDVIYPARISLREALCGCTVNVPTL----------------------------------------------------  117 (181)
T ss_dssp             EETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------------------
T ss_pred             eeCCcEEEEEEcCHHHHhCCCEEEeECC----------------------------------------------------
Confidence            5789999999999999999998776511                                                    


Q ss_pred             CccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCC-CCCCccEEEEEEEEeccccccCCcce
Q 012301          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPR-GGPPGDLYVYLDVEEIPGIQRDGIDL  348 (466)
Q Consensus       273 G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~-g~~~GDLiV~v~v~~~~~f~R~g~dL  348 (466)
                                          +.+.+.|+||+|+++|++++|+|+|++... ++..|||||+|+|..|..++.+..++
T Consensus       118 --------------------dG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~  174 (181)
T 3agx_A          118 --------------------DGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTV  174 (181)
T ss_dssp             --------------------TSCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHH
T ss_pred             --------------------CCCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHH
Confidence                                013578899999999999999999999754 35679999999999998877665443

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=98.72  E-value=5e-09  Score=95.38  Aligned_cols=84  Identities=21%  Similarity=0.322  Sum_probs=69.0

Q ss_pred             ccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCC
Q 012301          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (466)
Q Consensus       193 ~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~  272 (466)
                      +.|.|+.+++.|+|.||+.|+++++..-                                                    
T Consensus        84 R~G~DL~~~~~Isl~eAllG~~~~v~tl----------------------------------------------------  111 (170)
T 1c3g_A           84 RDGDDLIYTLPLSFKESLLGFSKTIQTI----------------------------------------------------  111 (170)
T ss_dssp             EETTEEEEEECCBHHHHHHCEEEEEECS----------------------------------------------------
T ss_pred             EeCCcEeEEEEcCHHHHhCCCeEEeeCC----------------------------------------------------
Confidence            5689999999999999999998776511                                                    


Q ss_pred             CccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCC-CCCccEEEEEEEEeccccccCCcce
Q 012301          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRG-GPPGDLYVYLDVEEIPGIQRDGIDL  348 (466)
Q Consensus       273 G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g-~~~GDLiV~v~v~~~~~f~R~g~dL  348 (466)
                                          +.+.++|+||+|+++|++++|+|+|++...+ +..|||||+|+|..|..++.+...|
T Consensus       112 --------------------dG~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~  168 (170)
T 1c3g_A          112 --------------------DGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRA  168 (170)
T ss_dssp             --------------------SSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHH
T ss_pred             --------------------CCCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHh
Confidence                                0135788999999999999999999996543 4579999999999998887665543

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.71  E-value=1.1e-08  Score=77.90  Aligned_cols=52  Identities=15%  Similarity=0.121  Sum_probs=47.3

Q ss_pred             ccchhcCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchh
Q 012301           78 DYYATLGVPKS---ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD  132 (466)
Q Consensus        78 ~~Y~vLgv~~~---as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~  132 (466)
                      ..|+||||+++   ++.++|+++||+|....|||+.   ++.....+|++|++.|...
T Consensus         5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG---GS~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG---GSFYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT---CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHHHH
Confidence            46899999999   9999999999999999999996   6778899999999999754

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=98.44  E-value=2.7e-07  Score=92.45  Aligned_cols=76  Identities=17%  Similarity=0.281  Sum_probs=59.3

Q ss_pred             cCCcceEEEEeeCHHhhhCCCEEEEecc------CC--------eEEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEE
Q 012301          343 RDGIDLFSTISISYLDAIMGTVVKVKTV------EG--------ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHL  408 (466)
Q Consensus       343 R~g~dL~~~~~Isl~eAl~G~~~~i~tl------dG--------~~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~  408 (466)
                      +.|.||.+.+.|+|.||+.|.+.+|..-      .|        .++|+||+|+++|+++|++|+|.|..++ +..||||
T Consensus       138 ~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~g-g~~GDL~  216 (329)
T 3lz8_A          138 ARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENG-GPNGDLW  216 (329)
T ss_dssp             CCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC----CCCCCEE
T ss_pred             CCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCC-CCCCcEE
Confidence            5678888888999999998887766532      22        3579999999999999999999986543 4689999


Q ss_pred             EEEEEECCCCC
Q 012301          409 FTVKVTIPNRI  419 (466)
Q Consensus       409 I~~~V~~P~~l  419 (466)
                      |+|+|.-...+
T Consensus       217 v~I~v~~h~~F  227 (329)
T 3lz8_A          217 LVIHIAPHPLF  227 (329)
T ss_dssp             EEECCCCCSSC
T ss_pred             EEEEEecCCcc
Confidence            99988766543

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.78  E-value=9.5e-06  Score=67.48  Aligned_cols=52  Identities=29%  Similarity=0.699  Sum_probs=40.7

Q ss_pred             eeeecccccCcccccC-----cceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeee
Q 012301          221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK  284 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~-----~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~  284 (466)
                      ....|+.|+|+|....     ....+|+.|+|.|+++.            .+|+.|+|.|.+.+.+-.+
T Consensus        44 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~~~k~l~  100 (104)
T 2ctt_A           44 KVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII------------SPCVVCRGAGQAKQKKRSG  100 (104)
T ss_dssp             CCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS------------SCCSSSSSCSEECCCCSSC
T ss_pred             CCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC------------CcCCCCCCeeEEEEEEEEE
Confidence            3568999999996532     12578999999999875            6899999999987654433

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.75  E-value=8.3e-06  Score=64.19  Aligned_cols=47  Identities=32%  Similarity=0.798  Sum_probs=37.3

Q ss_pred             eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEe
Q 012301          221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS  279 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  279 (466)
                      ...+|+.|+|+|.....     ...+|+.|+|.|+++.            .+|+.|+|.|.+.+
T Consensus        27 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~G~~~~   78 (79)
T 1exk_A           27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK------------DPCNKCHGHGRVER   78 (79)
T ss_dssp             CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS------------SBCGGGTTSSEEEC
T ss_pred             cCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC------------CcCCCCCCeEEEee
Confidence            35689999999976421     2468999999998764            68999999998753

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=97.52  E-value=2.7e-06  Score=91.99  Aligned_cols=78  Identities=19%  Similarity=0.356  Sum_probs=59.8

Q ss_pred             eeeEeeeccccccceeeeEeeeeeeecccccCcccccCc---ceeecCCCCcccEEEEe--------eeCCccce-eeee
Q 012301          199 RYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGS---KMRICSTCGGRGQVMRT--------DQTPFGLF-SQVS  266 (466)
Q Consensus       199 ~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~---~~~~C~~C~G~G~~~~~--------~~~~~G~~-~~~~  266 (466)
                      .+++.|+|+|+.+|.++++.+.+.+.|..|+|+|.+.+.   ...+|+.|+|.......        ..+-.|.| ++..
T Consensus       168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~  247 (669)
T 3pmq_A          168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS  247 (669)
T ss_dssp             SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred             eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence            468899999999999999999999999999999998886   57899999998421110        11112333 2336


Q ss_pred             eCCCCCCccE
Q 012301          267 VCPSCGGEGE  276 (466)
Q Consensus       267 ~C~~C~G~G~  276 (466)
                      .|..|+..+.
T Consensus       248 ~C~~CH~~~~  257 (669)
T 3pmq_A          248 NCQTCHADNP  257 (669)
T ss_dssp             CCTTTSCCCT
T ss_pred             cchhhcCCcc
Confidence            8999998875

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=97.16  E-value=5.6e-05  Score=54.85  Aligned_cols=31  Identities=26%  Similarity=0.737  Sum_probs=21.1

Q ss_pred             eeecccccCcccccCcceeecCCCCcccEEEEee
Q 012301          222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTD  255 (466)
Q Consensus       222 ~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~  255 (466)
                      ...|+.|+|+|....   .+|+.|+|.|+++..+
T Consensus         9 ~~~C~~C~GsG~~~~---~~C~~C~G~G~v~~~q   39 (53)
T 2bx9_A            9 EVACPKCERAGEIEG---TPCPACSGKGVILTAQ   39 (53)
T ss_dssp             EEECTTTTTSSEETT---EECTTTTTSSEEECHH
T ss_pred             cccCCCCcceeccCC---CCCccCCCCccEEEEe
Confidence            357888888887642   5677777777766543

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.08  E-value=0.00016  Score=52.47  Aligned_cols=27  Identities=44%  Similarity=0.998  Sum_probs=18.5

Q ss_pred             eeCCCCCCccEEEeeeeeeccCceEEE
Q 012301          266 SVCPSCGGEGEVISEYCRKCSGEGRIR  292 (466)
Q Consensus       266 ~~C~~C~G~G~~~~~~C~~C~G~G~v~  292 (466)
                      .+|+.|+|+|.++.++|..|+|.|.+.
T Consensus        10 ~~C~~C~GsG~~i~~~C~~C~G~G~v~   36 (53)
T 3lcz_A           10 TTCPNCNGSGREEPEPCPKCLGKGVIL   36 (53)
T ss_dssp             EECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred             ccCcCCcccccCCCCcCCCCCCcEEEE
Confidence            567777777777667777777777654

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.01  E-value=0.00029  Score=51.09  Aligned_cols=28  Identities=32%  Similarity=0.926  Sum_probs=15.2

Q ss_pred             eecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEe
Q 012301          240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS  279 (466)
Q Consensus       240 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  279 (466)
                      .+|+.|+|+|.++.            .+|+.|+|.|.+.+
T Consensus        10 ~~C~~C~GsG~~i~------------~~C~~C~G~G~v~~   37 (53)
T 3lcz_A           10 TTCPNCNGSGREEP------------EPCPKCLGKGVILT   37 (53)
T ss_dssp             EECTTTTTSCEETT------------EECTTTTTSSEEEC
T ss_pred             ccCcCCcccccCCC------------CcCCCCCCcEEEEE
Confidence            45555555555432            45666666665543

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.74  E-value=0.00063  Score=49.26  Aligned_cols=29  Identities=28%  Similarity=0.878  Sum_probs=18.4

Q ss_pred             eeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEe
Q 012301          239 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS  279 (466)
Q Consensus       239 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  279 (466)
                      ..+|+.|+|.|.++.            .+|+.|+|.|.++.
T Consensus         9 ~~~C~~C~GsG~~~~------------~~C~~C~G~G~v~~   37 (53)
T 2bx9_A            9 EVACPKCERAGEIEG------------TPCPACSGKGVILT   37 (53)
T ss_dssp             EEECTTTTTSSEETT------------EECTTTTTSSEEEC
T ss_pred             cccCCCCcceeccCC------------CCCccCCCCccEEE
Confidence            456777777776532            46777777776553

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=88.61  E-value=0.2  Score=54.24  Aligned_cols=50  Identities=22%  Similarity=0.320  Sum_probs=40.2

Q ss_pred             ccccCcccchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHH
Q 012301           72 VVCASGDYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEV  128 (466)
Q Consensus        72 ~~~~~~~~Y~vLgv~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~v  128 (466)
                      +.....|||.+||++.++..  .+|++|||+||+..+++       .+++..|..|+.|
T Consensus       624 ~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          624 LKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV  675 (681)
T ss_dssp             HTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred             HHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence            44556789999999777655  77999999999966554       5789999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	466
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	6e-25
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	5e-24
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	2e-20
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	4e-20
d1exka_	79	g.54.1.1 (A:) Cysteine-rich domain of the chaperon	4e-19
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	4e-19
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	8e-19
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-18
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	7e-18
d1nlta3	74	g.54.1.1 (A:139-212) Mitochondrial protein import	4e-17
d1c3ga2	90	b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba	5e-17
d1m1qa_	90	a.138.1.3 (A:) Flavocytochrome c3 (respiratory fum	6e-16
d1c3ga1	80	b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba	1e-13
d1c3ga1	80	b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba	0.002
d1nlta2	80	b.4.1.1 (A:258-337) Mitochondrial protein import p	6e-12
d1nlta2	80	b.4.1.1 (A:258-337) Mitochondrial protein import p	5e-04
d1nlta1	74	b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei	1e-07
d1nlta1	74	b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei	2e-06
d1qo8a1	101	a.138.1.3 (A:2-102) Flavocytochrome c3 (respirator	7e-05

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 95.5 bits (237), Expect = 6e-25
 Identities = 41/74 (55%), Positives = 52/74 (70%), Gaps = 1/74 (1%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
           A  DYY  LGV K+A  +EI+ AY++LA +YHPD N+ +  A  KFKEI  AYEVL+D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60

Query: 134 KRAMYDQYGEAGVK 147
           KRA YDQYG A  +
Sbjct: 61  KRAAYDQYGHAAFE 74

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.9 bits (230), Expect = 5e-24
 Identities = 47/76 (61%), Positives = 59/76 (77%), Gaps = 3/76 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY TLG+ + AS +EIK AYR+ A +YHPD NKEPGA EKFKEI+ AY+VLSD +KR +
Sbjct: 4   DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63

Query: 138 YDQYGEAGVKSTVGGG 153
           +D+YGE G+K   G G
Sbjct: 64  FDRYGEEGLK---GSG 76

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.6 bits (206), Expect = 2e-20
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVN-------KEPGATEKFKEISAAYEVLS 130
           D+Y+ LG   SA+  ++K  Y+KL   YHPD               +KF EI  A+++L 
Sbjct: 17  DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76

Query: 131 DDKKRAMYDQYG 142
           +++ +  YD   
Sbjct: 77  NEETKKKYDLQR 88

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 82.4 bits (203), Expect = 4e-20
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 78  DYYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPGATEK------FKEISAAYEVL 129
           DY+   G+P       + +   ++ L RQYHPD        E+         I+ A++ L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 130 SDDKKRAMYD 139
                RA Y 
Sbjct: 62  RHPLMRAEYL 71

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Length = 79

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

 Score = 79.4 bits (195), Expect = 4e-19
 Identities = 34/81 (41%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSC 271
           G  KE  +  LE C+VC G+GAK G++ + C TC G GQV        G F+    CP C
Sbjct: 1   GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQM----RQGFFAVQQTCPHC 56

Query: 272 GGEGEVISEYCRKCSGEGRIR 292
            G G +I + C KC G GR+ 
Sbjct: 57  QGRGTLIKDPCNKCHGHGRVE 77

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.7 bits (196), Expect = 4e-19
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKR 135
           +  + +         E K   R+L  ++HPD N E    A E FK +      L   +K+
Sbjct: 17  EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQ 73

Query: 136 AMYDQYGEAGVKST 149
           A  DQ  +   + T
Sbjct: 74  AFLDQNADRASRRT 87

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.2 bits (195), Expect = 8e-19
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 72  VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGA----TEKFKEISAAYE 127
           V+ A    +  +G+    + +++K  YRK     HPD              F E++ A+ 
Sbjct: 28  VLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWS 87

Query: 128 VLSDDKKRAMY 138
              +  ++ +Y
Sbjct: 88  EFENQGQKPLY 98

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 77.3 bits (190), Expect = 2e-18
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 78  DYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
                L +P+   G    ++ AY++ +   HPD     G+    +E+++ +     +   
Sbjct: 12  RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG---GSHALMQELNSLWGTFKTEVYN 68

Query: 136 AMYDQYG 142
              +  G
Sbjct: 69  LRMNLGG 75

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 77.1 bits (189), Expect = 7e-18
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 13/103 (12%)

Query: 78  DYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
                LG+ +SA G    ++ AY K  +++HPD   +    EK K+++  Y+ + D  K 
Sbjct: 9   QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---EKMKKMNTLYKKMEDGVKY 65

Query: 136 AMYDQYGEAGVKSTVGGGSSAYTTNPF------DLF--ETFFG 170
           A    +G     + +    +      +      +LF  E    
Sbjct: 66  AHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSEEMPS 108

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.6 bits (180), Expect = 4e-17
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 224 TCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEY-- 281
            C+ C G G K G+  + C++C G+G    T Q    +    + C  C G G++I     
Sbjct: 4   LCKECEGRGGKKGAVKK-CTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDR 62

Query: 282 CRKCSGEGRIR 292
           C+ C+G+    
Sbjct: 63  CKSCNGKKVEN 73

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.8 bits (181), Expect = 5e-17
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 342 QRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS-ELQVPPGTQPGDVLVLAKKGAPKLNK 400
           +RDG DL  T+ +S+ ++++G    ++T++G +  L      QP        +G P    
Sbjct: 3   KRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKN 62

Query: 401 PSIRGDHLFTVKVTIPNRISAKERELLE 428
           PS RG+ +   KV  P  ++  ++  ++
Sbjct: 63  PSQRGNLIVKYKVDYPISLNDAQKRAID 90

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Length = 90

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

 Score = 70.6 bits (172), Expect = 6e-16
 Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 3/73 (4%)

Query: 223 ETCEVCTGTG---AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS 279
             CE C   G   A    +   C +C G+   M     P       + C +         
Sbjct: 12  GGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQK 71

Query: 280 EYCRKCSGEGRIR 292
             C  C  +GR  
Sbjct: 72  PTCESCHDDGRTS 84

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.8 bits (155), Expect = 1e-13
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 271 CGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLY 330
             G+ +      +   G      K  I +++ PG   G+ +    +GD  P+ G    L 
Sbjct: 15  FVGKKKSFKIGRKGPHGASE---KTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQ 71

Query: 331 VYLDVEEIP 339
             +  +  P
Sbjct: 72  FVIQEKSHP 80

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 347 DLFSTISISYLDAIMGTVVKVK---------TVEGISELQVPPGTQPGDVLVLAKKGAPK 397
            +   + +S  D  +G     K         + +   ++Q+ PG + G  +    +G   
Sbjct: 2   TVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYN 61

Query: 398 LNKPSIRGDHLFTVKV 413
                 R    F ++ 
Sbjct: 62  PQT-GRRKTLQFVIQE 76

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.2 bits (143), Expect = 6e-12
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 4/78 (5%)

Query: 342 QRDGIDLFSTISISYLDAIMGTVVKVKTVEGI---SELQVPPGTQPGDVLVLAKKGAPKL 398
           +RDG DL     I  L AI G    ++ V G      +       PG   V+  KG P  
Sbjct: 3   KRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIP 62

Query: 399 NKPSIRGDHLFTVKVTIP 416
                 G+ +    +  P
Sbjct: 63  KYGG-YGNLIIKFTIKDP 79

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 271 CGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLY 330
            GGE  +                   + +     ++ G    + G+G   P+ G  G+L 
Sbjct: 22  AGGEFALEHVSGDWL----------KVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLI 71

Query: 331 VYLDVE 336
           +   ++
Sbjct: 72  IKFTIK 77

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.6 bits (110), Expect = 1e-07
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 343 RDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPS 402
           + G D+   IS S  +   G   K+     I E+ V PG + G  +V   +     +   
Sbjct: 2   QRGKDIKHEISASLEELYKGRTAKLALNRKILEVHVEPGMKDGQRIVFKGEADQAPDV-- 59

Query: 403 IRGDHLFTVKV 413
           I GD +F V  
Sbjct: 60  IPGDVVFIVSE 70

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (101), Expect = 2e-06
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 295 KNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEE 337
           K ++V V PG+  G  +   GE D  P    PGD+   +    
Sbjct: 31  KILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERP 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	466
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.9
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.87
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	99.8
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.76
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.76
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.67
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.62
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.59
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.59
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.58
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	99.56
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.52
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.36
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	99.3
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.03
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	98.96
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	98.6
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.93
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.73
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	96.69
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	83.44

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=7e-25  Score=177.96  Aligned_cols=89  Identities=25%  Similarity=0.480  Sum_probs=84.9

Q ss_pred             ccccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCC
Q 012301          340 GIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNR  418 (466)
Q Consensus       340 ~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~  418 (466)
                      .|+|+|+||+++++|++.||++|++++|+|+||+ ++|++|+++++|++++|+|+|||..++++.+|||||+|+|++|++
T Consensus         1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~   80 (90)
T d1c3ga2           1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPIS   80 (90)
T ss_dssp             SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSS
T ss_pred             CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCC
Confidence            4899999999999999999999999999999996 589999999999999999999999887778999999999999999


Q ss_pred             CCHHHHHHHH
Q 012301          419 ISAKERELLE  428 (466)
Q Consensus       419 ls~~~~~ll~  428 (466)
                      ||++|+++||
T Consensus        81 ls~~qk~~lE   90 (90)
T d1c3ga2          81 LNDAQKRAID   90 (90)
T ss_dssp             CCTTHHHHTC
T ss_pred             CCHHHHHhhC
Confidence            9999999875

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=5.5e-23  Score=160.82  Aligned_cols=71  Identities=56%  Similarity=0.923  Sum_probs=66.2

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCc
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV  146 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~  146 (466)
                      .+|||+||||+++||.+|||+|||+++++||||+++. +.+.+.|.+|++||+||+||.+|+.||+||..++
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~   73 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF   73 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSSC
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCcccc
Confidence            4799999999999999999999999999999999874 5677889999999999999999999999997765

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.5e-23  Score=160.36  Aligned_cols=73  Identities=62%  Similarity=1.042  Sum_probs=69.9

Q ss_pred             cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcc
Q 012301           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (466)
Q Consensus        75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~  147 (466)
                      |.+|||+||||+++||.+||++||+++++++|||++..+.+.++|+.|++||+||+||.+|+.||++|+++++
T Consensus         1 m~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~~   73 (77)
T d1hdja_           1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK   73 (77)
T ss_dssp             CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred             CCCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhc
Confidence            5689999999999999999999999999999999998888999999999999999999999999999998874

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=2e-20  Score=148.09  Aligned_cols=77  Identities=29%  Similarity=0.428  Sum_probs=71.3

Q ss_pred             ccccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCC--CccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECC
Q 012301          340 GIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP  416 (466)
Q Consensus       340 ~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g--~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P  416 (466)
                      .|+|+|+||+++++|++.||++|++++|+|+||+ ++++|+++  +++|++++|+|+|||..++ +.+|||||+|+|++|
T Consensus         1 tF~R~G~dL~~~~~I~~~eal~G~~~~i~~~dg~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~-~~~GDL~v~~~V~~P   79 (80)
T d1nlta2           1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKY-GGYGNLIIKFTIKDP   79 (80)
T ss_dssp             SCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSS-CSBCCEEEEEEEECC
T ss_pred             CcEEeCCEEEEEEEeCHHHHhCCCEEEEEecCcceEEEEeCCCCCcCCCCEEEecCCCCCCCCc-CCcCcEEEEEEEEcC
Confidence            4999999999999999999999999999999997 46778876  8999999999999999875 579999999999999


Q ss_pred             C
Q 012301          417 N  417 (466)
Q Consensus       417 ~  417 (466)
                      +
T Consensus        80 k   80 (80)
T d1nlta2          80 E   80 (80)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.76  E-value=7.3e-20  Score=154.49  Aligned_cols=67  Identities=28%  Similarity=0.429  Sum_probs=61.1

Q ss_pred             CcccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccC
Q 012301           76 SGDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG  145 (466)
Q Consensus        76 ~~~~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~  145 (466)
                      ..|||+||||+++|  +.++||+|||+||++||||++++   .++|++|++||+||+|+.+|+.||.++...
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~---~e~F~~I~~AY~vLsd~~kR~~YD~~~~~~   75 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGGFW   75 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh---HHHHHHHHHHHHHhCCHHHHHHHhccCCCC
Confidence            46899999999999  78899999999999999999864   457999999999999999999999987654

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=8.2e-20  Score=148.70  Aligned_cols=69  Identities=32%  Similarity=0.569  Sum_probs=62.2

Q ss_pred             ccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------chHHHHHHHHHHHHHhchhhhhccccccc
Q 012301           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP-------GATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (466)
Q Consensus        74 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-------~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g  142 (466)
                      .+.+|||+||||+++|+.+|||+||++|+++||||+++..       .+.++|+.|++||+||+||.+|+.||...
T Consensus        13 ~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~   88 (94)
T d1wjza_          13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             hhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcc
Confidence            3457999999999999999999999999999999998642       36788999999999999999999999753

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.67  E-value=1.5e-17  Score=130.34  Aligned_cols=64  Identities=16%  Similarity=0.301  Sum_probs=58.5

Q ss_pred             CcccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhccccccc
Q 012301           76 SGDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (466)
Q Consensus        76 ~~~~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g  142 (466)
                      ..+||+||||++++  +.++||+|||+++++||||++   +..++|++|++||++|+|+.+|..||..+
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~---g~~e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG---GSHALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGS---CCHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccC---CCHHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            45899999999988  999999999999999999997   34678999999999999999999999844

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=7.9e-17  Score=125.76  Aligned_cols=63  Identities=29%  Similarity=0.508  Sum_probs=55.8

Q ss_pred             ccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHHHhchhhhhccccc
Q 012301           78 DYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEP------GATEKFKEISAAYEVLSDDKKRAMYDQ  140 (466)
Q Consensus        78 ~~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~------~~~~~f~~i~~Ay~vL~d~~~R~~yd~  140 (466)
                      |||++|||+++  ++.+|||+|||++++++|||+....      .+.+.|+.|++||+||+||.+|+.|+-
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll   72 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLL   72 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            79999999985  4589999999999999999997532      256789999999999999999999974

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.59  E-value=1.5e-16  Score=129.95  Aligned_cols=66  Identities=21%  Similarity=0.409  Sum_probs=59.7

Q ss_pred             cccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHHHhchhhhhccc
Q 012301           73 VCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDKKRAMY  138 (466)
Q Consensus        73 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~----~~~~f~~i~~Ay~vL~d~~~R~~y  138 (466)
                      .+...++|++|||...+|.+|||+|||++++++|||++..+.    +.+.|+.|++||++|+||.+|+.|
T Consensus        29 l~~~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          29 LWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             SCTTCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cCCcccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            355668899999999999999999999999999999976543    678899999999999999999988

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.9e-16  Score=126.52  Aligned_cols=66  Identities=26%  Similarity=0.309  Sum_probs=57.5

Q ss_pred             CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhchhhhhccccccccc
Q 012301           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEA  144 (466)
Q Consensus        76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~  144 (466)
                      -+++|+||+|+.+||.+|||+|||+|+++||||+++.  ..+.++|+.|++||++|++   ++.||++...
T Consensus        15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~~~~   82 (88)
T d1iura_          15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQNADR   82 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSSSSSC
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhccchH
Confidence            3689999999999999999999999999999999875  3578899999999999975   5677775543

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1.2e-15  Score=120.21  Aligned_cols=80  Identities=20%  Similarity=0.410  Sum_probs=67.3

Q ss_pred             CceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCcc
Q 012301          196 EDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG  275 (466)
Q Consensus       196 ~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G  275 (466)
                      ++|.++|.|||||+|.|+++++.+.+.    .|+                 |.+                          
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~----~~~-----------------g~~--------------------------   33 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRK----GPH-----------------GAS--------------------------   33 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEE----ETT-----------------TEE--------------------------
T ss_pred             CCEEEEeEEEHHHHhCCCceEeeccee----ccc-----------------CCC--------------------------
Confidence            478999999999999999999886542    122                 211                          


Q ss_pred             EEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEecc
Q 012301          276 EVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIP  339 (466)
Q Consensus       276 ~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~  339 (466)
                                       +.+++.|.||||+++|++|+|+|+|++.+.++.+|||+|+|++++||
T Consensus        34 -----------------~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~~~i~~~~HP   80 (80)
T d1c3ga1          34 -----------------EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHP   80 (80)
T ss_dssp             -----------------EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCS
T ss_pred             -----------------ceEEEEEEECCCCCCCcEEEECCccccCcCCCCCCCEEEEEEeCCCC
Confidence                             24679999999999999999999999987777899999999999996

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=5.2e-15  Score=114.60  Aligned_cols=73  Identities=26%  Similarity=0.476  Sum_probs=65.2

Q ss_pred             ccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCC
Q 012301          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (466)
Q Consensus       193 ~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~  272 (466)
                      +++.|+.++|.|||+|+|+|+++++.+.                                                    
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~~----------------------------------------------------   29 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLALN----------------------------------------------------   29 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEEE----------------------------------------------------
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceeec----------------------------------------------------
Confidence            5788999999999999999999887532                                                    


Q ss_pred             CccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEecc
Q 012301          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIP  339 (466)
Q Consensus       273 G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~  339 (466)
                                           .++++|+||+|+++|++|+|+|+|++.+ ++.+|||+|+|++++|+
T Consensus        30 ---------------------~~~~~i~Ip~G~~~G~~ir~~g~G~~~~-~~~~GDl~v~i~~~pHk   74 (74)
T d1nlta1          30 ---------------------RKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHK   74 (74)
T ss_dssp             ---------------------EEEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCCS
T ss_pred             ---------------------CccEEEEecccccCCeEEEecCCcCCCC-CCCCCCEEEEEEecCCC
Confidence                                 3568899999999999999999999986 67899999999999985

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=5.5e-15  Score=115.91  Aligned_cols=78  Identities=44%  Similarity=0.963  Sum_probs=69.3

Q ss_pred             ceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEE
Q 012301          212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (466)
Q Consensus       212 G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v  291 (466)
                      |.+++|.|++.+.|+.|+|+|...+....+|+.|+|.|++..    .+|++++.++|+.|+|+|+++.++|..|+|.|++
T Consensus         1 G~~k~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~----~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v   76 (79)
T d1exka_           1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQM----RQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV   76 (79)
T ss_dssp             CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEE----EETTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred             CceEEEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEE----ecccceeeEECcccCcceeECCCCCCCCCCceEe
Confidence            567889999999999999999998888899999999998754    3467777789999999999999999999999987


Q ss_pred             Ee
Q 012301          292 RL  293 (466)
Q Consensus       292 ~~  293 (466)
                      ..
T Consensus        77 ~k   78 (79)
T d1exka_          77 ER   78 (79)
T ss_dssp             EC
T ss_pred             ec
Confidence            54

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=2.9e-13  Score=104.53  Aligned_cols=72  Identities=28%  Similarity=0.652  Sum_probs=62.5

Q ss_pred             eeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEe--eeeeeccCceEEEe
Q 012301          221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--EYCRKCSGEGRIRL  293 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~--~~C~~C~G~G~v~~  293 (466)
                      |.++|+.|+|+|..... ..+|+.|+|+|++....+++++++++..+|+.|+|+|+++.  ++|..|+|.|.+++
T Consensus         1 r~v~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~E   74 (74)
T d1nlta3           1 KQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENE   74 (74)
T ss_dssp             EEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEE
T ss_pred             CccCCcCCcccccCCCC-CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeEeCC
Confidence            46899999999988764 57899999999999888888877777789999999998864  68999999998754

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=2.6e-12  Score=99.11  Aligned_cols=70  Identities=27%  Similarity=0.384  Sum_probs=64.1

Q ss_pred             cCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEE
Q 012301          343 RDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVT  414 (466)
Q Consensus       343 R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~  414 (466)
                      |+|.|+.+++.|||.||++|.++.|.+..+.+.|+||+|+++|++++++|+|.+..+  +.+|||+|++++.
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~~~~~~~i~Ip~G~~~G~~ir~~g~G~~~~~--~~~GDl~v~i~~~   71 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLALNRKILEVHVEPGMKDGQRIVFKGEADQAPD--VIPGDVVFIVSER   71 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTT--CBCCCEEEEEEEC
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceeecCccEEEEecccccCCeEEEecCCcCCCCC--CCCCCEEEEEEec
Confidence            679999999999999999999999998777789999999999999999999988654  4689999999975

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=5.2e-11  Score=95.13  Aligned_cols=84  Identities=21%  Similarity=0.314  Sum_probs=70.1

Q ss_pred             ccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCC
Q 012301          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (466)
Q Consensus       193 ~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~  272 (466)
                      ++|.|+.+.+.|+|.||+.|+++++..-                                                    
T Consensus         4 R~G~DL~~~~~I~~~eal~G~~~~i~~~----------------------------------------------------   31 (90)
T d1c3ga2           4 RDGDDLIYTLPLSFKESLLGFSKTIQTI----------------------------------------------------   31 (90)
T ss_dssp             EETTEEEEEECCBHHHHHHCEEEEEECS----------------------------------------------------
T ss_pred             EeCCeEEEEEEeCHHHHhcCCeEEEecc----------------------------------------------------
Confidence            4689999999999999999998887521                                                    


Q ss_pred             CccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCC-CCCCccEEEEEEEEeccccccCCcce
Q 012301          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPR-GGPPGDLYVYLDVEEIPGIQRDGIDL  348 (466)
Q Consensus       273 G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~-g~~~GDLiV~v~v~~~~~f~R~g~dL  348 (466)
                                          +.++++|+||+|+++|++++++|+|++... ++..|||+|+|+|..|..++.+..++
T Consensus        32 --------------------dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~ls~~qk~~   88 (90)
T d1c3ga2          32 --------------------DGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRA   88 (90)
T ss_dssp             --------------------SSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHH
T ss_pred             --------------------cccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCCCCHHHHHh
Confidence                                135688999999999999999999998653 45689999999999998887765543

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=4.1e-10  Score=87.77  Aligned_cols=75  Identities=25%  Similarity=0.438  Sum_probs=62.8

Q ss_pred             ccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCC
Q 012301          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (466)
Q Consensus       193 ~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~  272 (466)
                      +.|.|+.++++|+|.||+.|+++++...                                                    
T Consensus         4 R~G~dL~~~~~I~~~eal~G~~~~i~~~----------------------------------------------------   31 (80)
T d1nlta2           4 RDGDDLVYEAEIDLLTAIAGGEFALEHV----------------------------------------------------   31 (80)
T ss_dssp             EETTEEEEEEEEEHHHHHHCBCCEEECS----------------------------------------------------
T ss_pred             EeCCEEEEEEEeCHHHHhCCCEEEEEec----------------------------------------------------
Confidence            4688999999999999999998877521                                                    


Q ss_pred             CccEEEeeeeeeccCceEEEeeeEEEEEcCCC--CcCCcEEEEccCCCCCCCCCCCccEEEEEEEEecc
Q 012301          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPG--VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIP  339 (466)
Q Consensus       273 G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G--~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~  339 (466)
                                          +...++|+||++  +++|++++++|+|++...++..|||||+++|+.|+
T Consensus        32 --------------------dg~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~V~~Pk   80 (80)
T d1nlta2          32 --------------------SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPE   80 (80)
T ss_dssp             --------------------SSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC
T ss_pred             --------------------CcceEEEEeCCCCCcCCCCEEEecCCCCCCCCcCCcCcEEEEEEEEcCC
Confidence                                124567778776  99999999999999987777899999999998763

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=6e-08  Score=75.14  Aligned_cols=68  Identities=18%  Similarity=0.285  Sum_probs=56.4

Q ss_pred             cceEEEEeeCHHhhhCCCEEEEe----ccCCe-----EEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEE
Q 012301          346 IDLFSTISISYLDAIMGTVVKVK----TVEGI-----SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVT  414 (466)
Q Consensus       346 ~dL~~~~~Isl~eAl~G~~~~i~----tldG~-----~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~  414 (466)
                      .|+...+.|||.||..|++.+|.    ..+|.     +.|.||+|++.|++++++|+|....++ +..|||+|.+++.
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~~~~g~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~~~i~~~   77 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEK   77 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCCTTCEEEESSCSSBCSSS-SCBCEEEEEEEEC
T ss_pred             CCEEEEeEEEHHHHhCCCceEeecceecccCCCceEEEEEEECCCCCCCcEEEECCccccCcCC-CCCCCEEEEEEeC
Confidence            37889999999999999987765    34553     479999999999999999999876543 3579999999875

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=1.5e-06  Score=66.79  Aligned_cols=47  Identities=32%  Similarity=0.798  Sum_probs=38.0

Q ss_pred             eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEe
Q 012301          221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS  279 (466)
Q Consensus       221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  279 (466)
                      ....|+.|+|+|.....     ...+|+.|+|+|+++.            .+|+.|+|.|.+.+
T Consensus        27 ~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~k   78 (79)
T d1exka_          27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK------------DPCNKCHGHGRVER   78 (79)
T ss_dssp             CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS------------SBCGGGTTSSEEEC
T ss_pred             cceeCCCccceeEEEEecccceeeEECcccCcceeECC------------CCCCCCCCceEeec
Confidence            35679999999975322     2568999999999864            68999999998864

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=3.3e-06  Score=64.03  Aligned_cols=46  Identities=28%  Similarity=0.749  Sum_probs=36.1

Q ss_pred             eecccccCcccccCcc---------eeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEE
Q 012301          223 ETCEVCTGTGAKMGSK---------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI  278 (466)
Q Consensus       223 ~~C~~C~GtG~~~~~~---------~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  278 (466)
                      ..|+.|+|+|......         ..+|+.|+|+|+++...          .+|+.|+|.|.+.
T Consensus        19 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~----------~~C~~C~G~g~v~   73 (74)
T d1nlta3          19 KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPK----------DRCKSCNGKKVEN   73 (74)
T ss_dssp             CCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTT----------SBCSSSTTSCEEE
T ss_pred             CCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCC----------CCCCCCCCeeEeC
Confidence            4699999999764332         46899999999876422          6899999999765

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=96.69  E-value=1.6e-05  Score=62.23  Aligned_cols=68  Identities=21%  Similarity=0.430  Sum_probs=50.7

Q ss_pred             ecccccCcccccCcc---eeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEE
Q 012301          224 TCEVCTGTGAKMGSK---MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (466)
Q Consensus       224 ~C~~C~GtG~~~~~~---~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v  291 (466)
                      .|..|+|.|......   ...|..|+|.|..........+.+..-..|..|+|.|..+.+.|..|.+.|+.
T Consensus        13 ~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~   83 (90)
T d1m1qa_          13 GCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRT   83 (90)
T ss_dssp             CGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCC
T ss_pred             CCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCCcc
Confidence            699999988654332   45799999998754433333333444478999999999899999999999864

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=83.44  E-value=0.069  Score=40.41  Aligned_cols=44  Identities=20%  Similarity=0.489  Sum_probs=30.4

Q ss_pred             eecccccCcccccCcc---------eeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEE
Q 012301          223 ETCEVCTGTGAKMGSK---------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI  278 (466)
Q Consensus       223 ~~C~~C~GtG~~~~~~---------~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  278 (466)
                      ..|..|+|+|......         -..|..|+|.|..+.            ..|..|++.|.+.
T Consensus        32 ~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~------------~~C~~CH~~gr~~   84 (90)
T d1m1qa_          32 AQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQK------------PTCESCHDDGRTS   84 (90)
T ss_dssp             HHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCC------------CCSTTTCSSCCCH
T ss_pred             CcCcccCCCceeEeeccccccCccccccCccccCCCCcCC------------CccccccCCCccc
Confidence            5799999998754322         245666777664332            6899999999753