Citrus Sinensis ID: 012315

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460------
Protein Sequence
MSARALFYSPILQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccccccccccccccHHHHcccccccccccccccccccEccccEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHEEEHHHHcccccHHcEEEEEHHHHHHHEEEcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccHHHHHccccHHEEEEHHHcccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEHHHHHHHHHcccccccHcccHHHHHHHHHHHcHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccEccc
Coil and Loop (DISEMBL)
msaralfyspilqsppyisarNKLSraelrprglprlllgvlsgdrvcsfrvsvrdvksesynvsekSVKFEEALKDIALRsedlgvdseslvpwweefpkRWFIVVLCFSAFLLCNMDRVNMSIAIlpmsaefnwnpatvgliqssFFWGYLLTQIAggiwadtvggKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIgegvampamNNILSKWVPVAERSRSLALVYSGMYlgsvtglafspflihrfgwpsvfysfgslGTVWFTVWLSkahsspaedpqlrpaeKKLIVSscaskepvktipwglilskppvWALIVSHFCHNWGTFILLTWMPTYYNQIMQSIgflgpaffltqlshvdspAMAVLCMACsqgtdafsqsglysnhqdiaprySGVLLGLSNTAGVLAGVFGTAATGYilqhgswddvFKVSVGLYLVGTAVWNLFSTGEKVVD
Flexible Loop (DISEMBL)
msaralfyspilqsppyisARNKLSRAELRPRGLPRlllgvlsgdrvcsfrvsvrdvksesynvseksvkfEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHsspaedpqlrpAEKKLIVSscaskepvktipwglilSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWnlfstgekvvd
Low Complexity Region (SEG)
MSARALFYSPILQSPPYISARNKLSRAElrprglprlllgVLSGDRVCSFRVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD
Disordered region (IsUnstruct)
******FYSPIL******************PRGLPRLLLGVLSGDRVCSFRVSVRDVKS**YNV****VKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS*******************IVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFST******
Disordered Region (DISOPRED)
**********************************************************************************************WWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE****RP*********************GLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV*
Disordered Region (DISEMBL)
MSARALFYSPILQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSVR**********EKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA**********RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD
Disordered Region (DISPRO)
**ARALFYSPILQSPPYISARNKLS*******************************************************************VPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKV**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSARALFYSPILQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	466	2.2.26 [Sep-21-2011]
O82390	512	Sodium-dependent phosphat	yes	no	0.980	0.892	0.687	0.0
Q9SDI4	529	Probable anion transporte	yes	no	0.791	0.697	0.792	0.0
Q8GX78	541	Probable anion transporte	no	no	0.905	0.780	0.682	0.0
Q652N5	591	Probable anion transporte	no	no	0.916	0.722	0.673	0.0
Q7XJR2	512	Probable anion transporte	no	no	0.858	0.781	0.352	2e-73
Q3E9A0	517	Probable anion transporte	no	no	0.776	0.700	0.377	5e-71
Q66GI9	533	Probable anion transporte	no	no	0.787	0.688	0.371	7e-70
Q8W0H5	519	Probable anion transporte	no	no	0.748	0.672	0.364	2e-69
Q53WP9	535	Probable anion transporte	no	no	0.789	0.687	0.350	5e-65
Q2QWW7	439	Probable anion transporte	no	no	0.787	0.835	0.327	2e-59

>sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/521 (68%), Positives = 394/521 (75%), Gaps = 64/521 (12%)

Query: 1   MSARALFYSPILQS------PPYISARNKLSRAELRPRGLPR-LLLGVLSGDRVCSFRVS 53
           M+ARAL  S  + S      PP  ++ ++  R  L+P   P+ L + +   +R   FRV 
Sbjct: 1   MNARALLCSSNIHSLYTSNRPPEKTSSSRSLR-NLKPS--PKSLRVWIYPRNRSSVFRVL 57

Query: 54  VRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSES--LVPWWEEFPKRWFIVVLCFS 111
           VR            +  + E   D    + D+  DS S  ++PWWEEFPKRW IV+LCFS
Sbjct: 58  VRSSDKSE----SSNSYYVEG--DKVSGNNDVVSDSPSSIVLPWWEEFPKRWVIVLLCFS 111

Query: 112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV 171
           AFLLCNMDRVNMSIAILPMSAE+ WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK V
Sbjct: 112 AFLLCNMDRVNMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRV 171

Query: 172 LGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS 231
           LGFGV+WWSIAT LTPVAAKLGLP+LLVVR FMG+GEGVAMPAMNNILSKWVPV ERSRS
Sbjct: 172 LGFGVIWWSIATILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRS 231

Query: 232 LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 291
           LALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGTVW T+WL+KA SSP EDP L
Sbjct: 232 LALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTL 291

Query: 292 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ- 350
            P E+KLI  +CASKEPVK+IPW LILSKPPVWALI  HFCHNWGTFILLTWMPTYY+Q 
Sbjct: 292 LPEERKLIADNCASKEPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQV 351

Query: 351 ---------------------------------------------IMQSIGFLGPAFFLT 365
                                                        IMQ+IGFLGPAFFLT
Sbjct: 352 LKFNLMESGLLSVFPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLT 411

Query: 366 QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGT 425
           QL H+DSP MAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV GT
Sbjct: 412 QLKHIDSPTMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVLGT 471

Query: 426 AATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 466
           AATG+ILQHGSWDDVF +SVGLYLVGT +WNLFSTGEK++D
Sbjct: 472 AATGHILQHGSWDDVFTISVGLYLVGTVIWNLFSTGEKIID 512

Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/415 (79%), Positives = 340/415 (81%), Gaps = 46/415 (11%)

Query: 98  EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQI 157
           +FPKRW IV LCFSAFLLCNMDRVNMSIAILPMSAEF WNP TVGLIQSSFFWGYLLTQI
Sbjct: 115 QFPKRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQI 174

Query: 158 AGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNN 217
           AGGIWADTVGGK VLGFGV+WWSIATALTP AAKLGLPFLLV R FMG+GEGVAMPAMNN
Sbjct: 175 AGGIWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNN 234

Query: 218 ILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW 277
           ILSKWVPV+ERSRSLALVYSGMYLGSVTGLAFSP LIH FGWPSVFYSFGSLG  WF+ W
Sbjct: 235 ILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTW 294

Query: 278 LSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGT 337
            SKA+SSP EDP +   EKKLI S     EPVK IPWGLILSKPPVWALIVSHFCHNWGT
Sbjct: 295 ASKAYSSPLEDPGISAEEKKLITSQTTGGEPVKEIPWGLILSKPPVWALIVSHFCHNWGT 354

Query: 338 FILLTWMPTYYNQ----------------------------------------------I 351
           FILLTWMPTYYNQ                                              I
Sbjct: 355 FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSVTTVRKI 414

Query: 352 MQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLG 411
           MQSIGFLGPAFFLTQLSH+DSPAMAVLCMACSQGTDAFSQSGLYSNHQDI PRY+GVLLG
Sbjct: 415 MQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIGPRYAGVLLG 474

Query: 412 LSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 466
           LSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSV LYLVGT VWNLFSTGEK++D
Sbjct: 475 LSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVVLYLVGTLVWNLFSTGEKIID 529

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/470 (68%), Positives = 364/470 (77%), Gaps = 48/470 (10%)

Query: 45  DRVCSFRVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDS--ESLVPWWEEFPKR 102
           D V  FR S++  +S +Y  SE+S   E  +      +E + V+   ++  PWW++FP+R
Sbjct: 72  DSVIRFRNSIKINRSRAYYKSEESDITEGVVPSADGSAEAILVEGNLQNASPWWQQFPRR 131

Query: 103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIW 162
           W IV+LCFS+FLLCNMDRVNMSIAILPMS E+NW+ ATVGLIQSSFFWGYLLTQI GGIW
Sbjct: 132 WVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQILGGIW 191

Query: 163 ADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW 222
           AD  GGK VLGFGVVWWS AT +TP+AA+LGLPFLLVVR FMGIGEGVAMPAMNN+LSKW
Sbjct: 192 ADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNMLSKW 251

Query: 223 VPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH 282
           +PV+ERSRSLALVYSGMYLGSVTGLAFSP LI +FGWPSVFYSFGSLG++WF +WL  A+
Sbjct: 252 IPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKFAY 311

Query: 283 SSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT 342
           SSP +DP L   EKK+I+     +EPV  IPW LILSKPPVWALI+SHFCHNWGTFILLT
Sbjct: 312 SSPKDDPDLSEEEKKVILGGSKPREPVTVIPWKLILSKPPVWALIISHFCHNWGTFILLT 371

Query: 343 WMPTYYNQ----------------------------------------------IMQSIG 356
           WMPTYYNQ                                              IMQSIG
Sbjct: 372 WMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSRGLSITNVRKIMQSIG 431

Query: 357 FLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTA 416
           FLGPAFFL+QLSHV +PAMAVLCMACSQG+DAFSQSGLYSNHQDI PRY+GVLLGLSNTA
Sbjct: 432 FLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTA 491

Query: 417 GVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 466
           GVLAGVFGTAATGYILQ GSWDDVFKV+V LYL+GT VWNLF+TGEK++D
Sbjct: 492 GVLAGVFGTAATGYILQRGSWDDVFKVAVALYLIGTLVWNLFATGEKILD 541

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/484 (67%), Positives = 367/484 (75%), Gaps = 57/484 (11%)

Query: 35  PRLLLGVLSGDRVC---SFRVSVR---DVKSESYNVSEKSVKFEEALKDIALRSEDLGVD 88
           PR      S D  C    +++ VR   D K+E Y ++   +    +  D+   +  +G D
Sbjct: 113 PRRWDNFTSLDTACVQPDYKIPVRTRADCKAEQYEITGSPL----SPSDVPAEAVLIG-D 167

Query: 89  SESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSF 148
           +  + PWW++FPKRW +V+LCF +FLLCNMDRVNMSIAILPMS+EF W+PATVGLIQSSF
Sbjct: 168 TNEISPWWQQFPKRWTVVLLCFFSFLLCNMDRVNMSIAILPMSSEFGWSPATVGLIQSSF 227

Query: 149 FWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGE 208
           FWGYLLTQI GGIWAD  GGK VLGFGVVWWSIAT LTP+AAK+GLPFLLV+R FMGIGE
Sbjct: 228 FWGYLLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKIGLPFLLVMRAFMGIGE 287

Query: 209 GVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS 268
           GVAMPAMNNILSKWVPV+ERSRSLALVYSGMYLGSVTGLAFSP LI RFGWPSVFY+FGS
Sbjct: 288 GVAMPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGWPSVFYAFGS 347

Query: 269 LGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIV 328
           LG+VWF +W  KAHSSP+EDP+L  AEK+ I+     KEPV +IPW LILSKPPVWALIV
Sbjct: 348 LGSVWFALWQRKAHSSPSEDPELSKAEKRYILGGSTLKEPVTSIPWKLILSKPPVWALIV 407

Query: 329 SHFCHNWGTFILLTWMPTYYNQ-------------------------------------- 350
           SHFCHNWGTFILLTWMPTYYNQ                                      
Sbjct: 408 SHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIGGWIADTLVGRG 467

Query: 351 --------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIA 402
                   IMQSIGFLGPA FLT LS V +PAMAVLCMACSQG+DAFSQSGLYSNHQDI 
Sbjct: 468 VSITNVRKIMQSIGFLGPALFLTLLSKVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIG 527

Query: 403 PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGE 462
           PRY+GVLLGLSNTAGVLAGVFGTAATGYILQ GSWD VF+V+V LY+VGT VWN+FSTGE
Sbjct: 528 PRYAGVLLGLSNTAGVLAGVFGTAATGYILQKGSWDSVFQVAVVLYIVGTVVWNVFSTGE 587

Query: 463 KVVD 466
           KV++
Sbjct: 588 KVLE 591

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2

 Score =  277 bits (708), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 163/463 (35%), Positives = 241/463 (52%), Gaps = 63/463 (13%)

Query: 55  RDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFL 114
           R+  ++  N S +    E  L          G  SE++       P+R  +V+L      
Sbjct: 59  RNAAAKKRNQSPERCAAEGVLTG--------GGGSEAIAEVRTMMPERIKVVILTACMMC 110

Query: 115 LCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF 174
           LCN DRV MS+A++P++ +  W+ + +G++QSSF WGY+ + + GG   D  GGK VL +
Sbjct: 111 LCNADRVVMSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAW 170

Query: 175 GVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLAL 234
           GV  WS+AT LTP AA      LL VR F G+ EGVAMP+M  +LS+W P+ ER+ ++ +
Sbjct: 171 GVALWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGI 230

Query: 235 VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA 294
             +G ++G+V GL  +P ++   G    F  F SLG +W + W S   ++P + P +  +
Sbjct: 231 SMAGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRS 290

Query: 295 EKKLIVS------SCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY 348
           E +LI +      S  S +P  ++   L+LSK P WA+I ++  +NWG F+LL+WMP Y+
Sbjct: 291 ELRLIQAGKPVQPSTISPKPNPSLR--LLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYF 348

Query: 349 N----------------------------------------------QIMQSIGFLGPAF 362
                                                          +IMQSIGF+GP  
Sbjct: 349 QTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPGL 408

Query: 363 FLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV 422
            L  L+   SP+ A + M  +    +FSQ+G   N QDIAP+Y+G L G+SN AG LA +
Sbjct: 409 SLLCLNFAKSPSCAAVFMTIALSLSSFSQAGFLLNMQDIAPQYAGFLHGISNCAGTLAAI 468

Query: 423 FGTAATGYILQ-HGSWDDVFKVSVGLYLVGTAVWNLFSTGEKV 464
             T  TGY +Q  GS+     V+  LY   T  W LF+TGE+V
Sbjct: 469 VSTIGTGYFVQWLGSFQAFLTVTAFLYFATTVFWLLFATGERV 511

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E9A0|ANTR6_ARATH Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1

 Score =  268 bits (686), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 161/426 (37%), Positives = 234/426 (54%), Gaps = 64/426 (15%)

Query: 94  PWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYL 153
           P W+  P+R+ ++     AF++CNMD+VN+SIAI+PMS +F W+ +  GL+QSSFFWGY 
Sbjct: 90  PPWKNIPQRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYA 149

Query: 154 LTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMP 213
           L+Q+ GG  +   GG+ VL  GV  WS ATAL P+ A   +P L+  R+ +GIGEGV+  
Sbjct: 150 LSQLPGGWLSKIFGGRKVLEIGVFTWSFATALVPLLAGF-MPGLIFSRILVGIGEGVSPS 208

Query: 214 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW 273
           A  +++++ +PV ERSR++  V+ G+ LGSV GL  +P +I  F W SVFY FG LG  W
Sbjct: 209 AATDLIARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGW 268

Query: 274 FT--VWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEP----VKTIPWGLILSKPPVWALI 327
           F    +L++   S  +  ++  + K    S  A+KE     +K IPW      P VWA+I
Sbjct: 269 FVGFQFLNEEEVS-YKGNEISTSHK----SENATKEELGSSLKEIPWKSFFQSPAVWAMI 323

Query: 328 VSHFCHNWGTFILLTWMPTYYNQ------------------------------------- 350
            +HFC +WG +  L+W+PTY+++                                     
Sbjct: 324 YTHFCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITN 383

Query: 351 ---------IMQSIGFLGPAFFLTQLSHVD---SPAMAVLCMACSQGTDAFSQSGLYSNH 398
                    I Q+I F+ PA  +T LS VD    P   V  +       +F+ SGLY  H
Sbjct: 384 GVDTTTVRKICQTIAFVAPAICMT-LSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTH 442

Query: 399 QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWD-DVFKVSVGLYLVGTAVWN 456
           QDI+P Y+ +LLG++NT G + G+ G A TG++L    SW   +F  S+  YL GT VW 
Sbjct: 443 QDISPEYASILLGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFFYLTGTVVWL 502

Query: 457 LFSTGE 462
            F++ E
Sbjct: 503 AFASSE 508

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1

 Score =  265 bits (676), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 160/431 (37%), Positives = 231/431 (53%), Gaps = 64/431 (14%)

Query: 94  PWWEEF--PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWG 151
           P + EF   +R  +V +   A  LCN DRV MS+AI+P+S    W+ +  G++QSSF WG
Sbjct: 101 PNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLWG 160

Query: 152 YLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVA 211
           YL++ IAGG   D  GGK V+ +GV  WS+AT LTP AA   L  LL  R  +G+ EGVA
Sbjct: 161 YLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGVA 220

Query: 212 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 271
           +P MNN++++W P  ERSR++ +  +G  LG+V GL  SP L+ + G    F  FG  G 
Sbjct: 221 LPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSGF 280

Query: 272 VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTI-----------PWGLILSK 320
           +W  VWLS   S+P   PQ+  +E + I      K+ + T+           P+G +LSK
Sbjct: 281 LWLLVWLSATSSAPDRHPQITKSELEYI----KQKKQISTMENKRISTSGIPPFGRLLSK 336

Query: 321 PPVWALIVSHFCHNWGTFILLTWMPTYYN------------------------------- 349
            P WA+IV++  H+WG F++L+WMP Y+N                               
Sbjct: 337 MPTWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFW 396

Query: 350 ---------------QIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGL 394
                          +IMQSIGF+GP   L  L+    P +A   ++ + G  +FS  G 
Sbjct: 397 SDLLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGF 456

Query: 395 YSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ-HGSWDDVFKVSVGLYLVGTA 453
             N Q+IAP YSGVL G+  TAG LA + GT   G+ ++  GS+     ++  LYL+   
Sbjct: 457 LINLQEIAPEYSGVLHGMCLTAGTLAAIVGTVGAGFFVELLGSFQGFILLTAILYLLSAL 516

Query: 454 VWNLFSTGEKV 464
            +N+++TGE+V
Sbjct: 517 FYNIYATGERV 527

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1

 Score =  263 bits (672), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 147/403 (36%), Positives = 214/403 (53%), Gaps = 54/403 (13%)

Query: 116 CNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFG 175
           CN DRV MS+AI+P+S  + W P+  G++QSSF WGYL++ I GG   D  GGK V+ +G
Sbjct: 111 CNADRVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVSPIIGGALVDYYGGKRVMAYG 170

Query: 176 VVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALV 235
           V  WS+AT L+P AA   L   L  RV +G+ EGVA+P+MNN++ +W P  ERS ++ + 
Sbjct: 171 VALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSMNNMVLRWFPRTERSSAVGIA 230

Query: 236 YSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAE 295
            +G  LG+  GL  SP ++ R G    F  FG  G +W  VW+S    +P E+ Q+   E
Sbjct: 231 MAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLVWISAISGTPGENAQISAHE 290

Query: 296 -------KKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY 348
                  +KL+ +    +   K  P+  +LSK P WALI ++  H+WG F++L+WMP Y+
Sbjct: 291 LDYITRGQKLVKTQSGGERLRKVPPFSKLLSKWPTWALISANAMHSWGYFVILSWMPVYF 350

Query: 349 N----------------------------------------------QIMQSIGFLGPAF 362
                                                          +IMQ+IGF+GP  
Sbjct: 351 KTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQNGTSITLTRKIMQTIGFVGPGV 410

Query: 363 FLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV 422
            L  L+   SP +A   +  + G  +F  SG   N Q+IAP+Y+GVL G+SNTAG  A +
Sbjct: 411 ALLGLNAAKSPVIASAWLTIAVGLKSFGHSGFLVNLQEIAPQYAGVLHGMSNTAGTFAAI 470

Query: 423 FGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLFSTGEKV 464
            GT   G+ +   GS+     ++  LY   T  W++F+TGE+V
Sbjct: 471 LGTVGAGFFVDRMGSFRGFLILTSLLYFSSTLFWDIFATGERV 513

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1

 Score =  248 bits (634), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 146/417 (35%), Positives = 217/417 (52%), Gaps = 49/417 (11%)

Query: 99  FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIA 158
            P+R  +V L  +  LLCN DRV MS+A++P +A++ W+ + +G++QSSF WGY+ + + 
Sbjct: 119 LPERAKVVALVAAVMLLCNADRVVMSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMV 178

Query: 159 GGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNI 218
           GG  AD  GGK V+      WS+AT LTP AA      LL +R   G+ EGVA P M+  
Sbjct: 179 GGALADRYGGKKVMAGAAALWSLATFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTF 238

Query: 219 LSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278
           L KW P  ER+ ++ +   G +LG+V     +P ++   G    F  F SLG +W +VWL
Sbjct: 239 LPKWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWL 298

Query: 279 SKAHSSPAEDPQLRPAEKKLIVSS-CASKEPVKTIP-WGLILSKPPVWALIVSHFCHNWG 336
               S P +   +  +E +LI++   ASK      P    ILSK  +WA+IV++  +NWG
Sbjct: 299 FNVESDPLDSRTISKSELQLILAGRSASKIQGSKFPSLREILSKIEMWAIIVANVVNNWG 358

Query: 337 TFILLTWMPTYYN----------------------------------------------Q 350
            F+LL+WMP Y+                                               +
Sbjct: 359 YFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGFSVALVRK 418

Query: 351 IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLL 410
           IMQSIGF+GP   L  L    +P++A + M  +    +FSQ+G + N QDIAP+Y+G L 
Sbjct: 419 IMQSIGFIGPGVSLLCLRFAQTPSVAAVLMTIALSLSSFSQAGYFCNVQDIAPKYAGSLH 478

Query: 411 GLSNTAGVLAGVFGTAATGYILQ-HGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 466
           GL+N  G +A +  T  TGY +Q  GS+     ++  LY   T  +N ++TG+ + D
Sbjct: 479 GLTNGIGTVAAIVSTIGTGYFVQWLGSFQAFLTLTAVLYFSATVFYNTYATGDLIFD 535

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QWW7|PHT47_ORYSJ Probable anion transporter 7 OS=Oryza sativa subsp. japonica GN=PHT4;7 PE=2 SV=1

 Score =  230 bits (587), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 142/434 (32%), Positives = 221/434 (50%), Gaps = 67/434 (15%)

Query: 98  EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQI 157
           +FPKR+ IV+L F    +C ++RV  SIA    +     N A  G+I S F++GY+L+QI
Sbjct: 8   KFPKRYVIVLLTFICTNVCYIERVGFSIAYTVAADAIGVNQANKGMILSMFYYGYVLSQI 67

Query: 158 AGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNN 217
            GG  A  +GG+ VL    V WS+   L P+  K  +  L++ R+F+G+ +G   PA++ 
Sbjct: 68  PGGWAAQRIGGRRVLLLSFVLWSLICGLIPLDPKREV-ILVLSRLFVGVAQGFIFPAIHT 126

Query: 218 ILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW 277
           +L++WVP  ERSRS++L  SGMYLG+  G+ F P L+   G  SVF+    LG  W  +W
Sbjct: 127 VLAQWVPPQERSRSVSLTTSGMYLGAAGGMLFFPSLVKHMGAQSVFFVEAVLGVAWSVIW 186

Query: 278 LSKAHSSPAED------PQLRPAEK-KLIVSSCASKEPVKTIPWGLILSKPPVWALIVSH 330
           L  +   P  D      P++   EK K       +   VK IPW  I+   PVWA++V++
Sbjct: 187 LKFSSEPPRTDLPKVSMPKVASREKIKAQAGGVVAPRTVK-IPWRRIIFSLPVWAIVVNN 245

Query: 331 FCHNWGTFILLTWMPTYYN----------------------------------------- 349
           F  ++  ++L+ W+PTY+                                          
Sbjct: 246 FTFHYALYVLMNWLPTYFELGLQLSLQDMGSSKMLPYFNMFIFSNIGGVVADHLITRRIL 305

Query: 350 ------QIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP 403
                 +++ +IGF+  A  L  L    +P+  VLC + S G  A  ++G   NH D+AP
Sbjct: 306 SITKTRKLLNTIGFVVSAVALMALPLFRTPSGTVLCSSISLGFLALGRAGFAVNHMDVAP 365

Query: 404 RYSGVLLGLSNTAGVLAGVFGTAATGYILQHG-----------SWDDVFKVSVGLYLVGT 452
           +++G+++G+SNTAG LAG+ G   TG IL+             +W  VF V   L +  +
Sbjct: 366 KFAGIVMGVSNTAGTLAGIVGVGLTGSILEGAKASNMDLTNSETWKTVFFVPGYLCIFSS 425

Query: 453 AVWNLFSTGEKVVD 466
            ++ +FSTGEK+ +
Sbjct: 426 IIFLIFSTGEKIFE 439

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	466
255569283	530	Sodium-dependent phosphate transport pro	0.980	0.862	0.710	0.0
224104305	520	predicted protein [Populus trichocarpa]	0.965	0.865	0.716	0.0
449515105	528	PREDICTED: sodium-dependent phosphate tr	1.0	0.882	0.708	0.0
225434656	514	PREDICTED: sodium-dependent phosphate tr	0.980	0.889	0.709	0.0
224054558	431	predicted protein [Populus trichocarpa]	0.819	0.886	0.813	0.0
356539597	511	PREDICTED: sodium-dependent phosphate tr	0.873	0.796	0.768	0.0
358346124	516	Sodium-dependent phosphate transport pro	0.879	0.794	0.752	0.0
297826359	512	hypothetical protein ARALYDRAFT_481880 [	0.974	0.886	0.696	0.0
312281837	510	unnamed protein product [Thellungiella h	0.969	0.886	0.688	0.0
388500962	516	unknown [Medicago truncatula]	0.879	0.794	0.748	0.0

>gi|255569283|ref|XP_002525609.1| Sodium-dependent phosphate transport protein, putative [Ricinus communis] gi|223535045|gb|EEF36727.1| Sodium-dependent phosphate transport protein, putative [Ricinus communis]

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/539 (71%), Positives = 411/539 (76%), Gaps = 82/539 (15%)

Query: 1   MSARALFY---SPILQSPPYISARNKLSRAELRPRGLPR-------LLLGVLSGDRVCSF 50
           MSARAL Y   +P+ +      +  K S  ++ P   PR       + L    G     F
Sbjct: 1   MSARALLYYSSAPLFRPRKTDISVPKKSFGQIIPDLKPRESFNFRVVRLQPEGGSCSGLF 60

Query: 51  RVSVR--------------DVKSESYNVSE---KSVKFEEALKDIALRSEDLGVDSESLV 93
           RVS                DVKSE Y +SE   +SVKFE++L          G DSES +
Sbjct: 61  RVSAHKSSRSRSEFVKVHADVKSERYKISESVPESVKFEDSLS---------GNDSESSL 111

Query: 94  PWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYL 153
           PWWEEFPKRW IV+LCFSAFLLCNMDRVNMSIAILPMSAE+NWNPATVGLIQSSFFWGYL
Sbjct: 112 PWWEEFPKRWVIVILCFSAFLLCNMDRVNMSIAILPMSAEYNWNPATVGLIQSSFFWGYL 171

Query: 154 LTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMP 213
           LTQIAGGIWADTVGGK VLGFGVVWWSIATALTPVAAK GLPFLLVVRVFMGIGEGVAMP
Sbjct: 172 LTQIAGGIWADTVGGKLVLGFGVVWWSIATALTPVAAKFGLPFLLVVRVFMGIGEGVAMP 231

Query: 214 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW 273
           AM NILSKWVPV+ERSRSLALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGT+W
Sbjct: 232 AMTNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTIW 291

Query: 274 FTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCH 333
           F VWL+KA+SSP +DPQLRP EK+LI+++ A KEPVK IPWGLILSKPPVWALIVSHFCH
Sbjct: 292 FAVWLNKAYSSPLDDPQLRPEEKQLIIANSACKEPVKVIPWGLILSKPPVWALIVSHFCH 351

Query: 334 NWGTFILLTWMPTYYNQ------------------------------------------- 350
           NWGTFILLTWMPTYYNQ                                           
Sbjct: 352 NWGTFILLTWMPTYYNQVLKFDLTESGLVCVLPWLTMAFSANLGGWIADTLVSKGYSVTT 411

Query: 351 ---IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSG 407
              IMQ+IGFLGPAFFLTQLSH++SPAMAVLCM CSQGTDAFSQSGLYSNHQDIAPRYSG
Sbjct: 412 VRKIMQTIGFLGPAFFLTQLSHINSPAMAVLCMTCSQGTDAFSQSGLYSNHQDIAPRYSG 471

Query: 408 VLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 466
           VLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT VWNLFSTGEK+VD
Sbjct: 472 VLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKIVD 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104305|ref|XP_002313389.1| predicted protein [Populus trichocarpa] gi|222849797|gb|EEE87344.1| predicted protein [Populus trichocarpa]

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/533 (71%), Positives = 408/533 (76%), Gaps = 83/533 (15%)

Query: 2   SARALFYS---PI---LQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSVR 55
           ++RAL YS   P    L+SPP IS+  +      RPR      + + +  R C FRVSVR
Sbjct: 3   TSRALLYSFTDPTFRPLKSPPDISSPKR------RPRERLNFRVRLHTDHRCCVFRVSVR 56

Query: 56  ------------DVKSESYNVSE---KSVKFEE-ALKDIALRSEDLGVDSESLVPWWEEF 99
                       DVKSE Y + E   +S K EE AL D+ L         +S VPWWEEF
Sbjct: 57  NSGRGETGKVYADVKSEPYEILETVPESAKLEEDALDDVVL---------DSTVPWWEEF 107

Query: 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAG 159
           PKRW IV+LCFSAFL CNMDRVNMSIAILPMSAE NWNPATVGLIQSSFFWGYLLTQ+AG
Sbjct: 108 PKRWVIVILCFSAFLPCNMDRVNMSIAILPMSAENNWNPATVGLIQSSFFWGYLLTQVAG 167

Query: 160 GIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNIL 219
           GIWADTVGGK VLGF V+WWSIAT LTPVAAK+GLPFLLVVR FMGIGEGVAMPAMNNIL
Sbjct: 168 GIWADTVGGKKVLGFAVIWWSIATILTPVAAKVGLPFLLVVRAFMGIGEGVAMPAMNNIL 227

Query: 220 SKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS 279
           SKWVPV+ERSRSLA VYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGTVWF  WLS
Sbjct: 228 SKWVPVSERSRSLAFVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWFAAWLS 287

Query: 280 KAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI 339
           KAHSSP +DPQLRPAEKKLI ++  SKEPV++IPW LILSK PVWALIVSHFCHNWGTFI
Sbjct: 288 KAHSSPLDDPQLRPAEKKLIFANSFSKEPVESIPWRLILSKAPVWALIVSHFCHNWGTFI 347

Query: 340 LLTWMPTYYNQ----------------------------------------------IMQ 353
           LLTWMPTYYNQ                                              IMQ
Sbjct: 348 LLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQ 407

Query: 354 SIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLS 413
           SIGFLGPAFFLTQLSH+DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLS
Sbjct: 408 SIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLS 467

Query: 414 NTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 466
           NTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT VWNLFSTGEK++D
Sbjct: 468 NTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKILD 520

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515105|ref|XP_004164590.1| PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic-like [Cucumis sativus]

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/528 (70%), Positives = 404/528 (76%), Gaps = 62/528 (11%)

Query: 1   MSARALFYSPILQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSVR----- 55
           M+A AL YS     P    +  K S  E RP+   R  L VL  DR   F++S R     
Sbjct: 1   MAAGALLYSFSPTPPNPSDSFKKFSLTERRPKFPSRFHLTVLPEDRCFVFQISARRHSGG 60

Query: 56  --------DVKSESYNVSEK---SVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWF 104
                   D+KS  Y+VS K   SVKF  ++    L  ++   +    +PWW++FPKRW 
Sbjct: 61  RGNWRLWTDLKSNPYDVSIKPPNSVKFNSSIDKSVLDDDEEEDELGDELPWWKQFPKRWL 120

Query: 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD 164
           IV LCFSAFLLCNMDRVNMSIAILPMSAE+NWNP TVGLIQSSFFWGYLLTQIAGGIWAD
Sbjct: 121 IVSLCFSAFLLCNMDRVNMSIAILPMSAEYNWNPQTVGLIQSSFFWGYLLTQIAGGIWAD 180

Query: 165 TVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP 224
           TVGGK VLGFGV+WWS+AT LTPVAAK+GLPFLLVVR FMGIGEGVAMPAMNNILSKWVP
Sbjct: 181 TVGGKLVLGFGVIWWSVATVLTPVAAKIGLPFLLVVRAFMGIGEGVAMPAMNNILSKWVP 240

Query: 225 VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSS 284
           VAERSRSLALVYSGMYLGSVTGLAFSPFLIH++GWPSVF+SFGSLG VWF VWL+KAHSS
Sbjct: 241 VAERSRSLALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFFSFGSLGAVWFAVWLNKAHSS 300

Query: 285 PAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM 344
           P +DPQLRP EKKLI ++  SKEPVK+IPWG ILSKPPVWALIVSHFCHNWGTFILLTWM
Sbjct: 301 PLDDPQLRPQEKKLIFANSVSKEPVKSIPWGTILSKPPVWALIVSHFCHNWGTFILLTWM 360

Query: 345 PTYYNQ----------------------------------------------IMQSIGFL 358
           PTYY+Q                                              IMQSIGFL
Sbjct: 361 PTYYHQVLKFNLTESGLLCVLPWLTMAFSANLGGWIADTLVSRGLSVTTVRKIMQSIGFL 420

Query: 359 GPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGV 418
           GPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGV
Sbjct: 421 GPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGV 480

Query: 419 LAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 466
           LAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT VWNLFSTGEK++D
Sbjct: 481 LAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKILD 528

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434656|ref|XP_002279594.1| PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic [Vitis vinifera] gi|297745933|emb|CBI15989.3| unnamed protein product [Vitis vinifera]

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/523 (70%), Positives = 398/523 (76%), Gaps = 66/523 (12%)

Query: 1   MSARALFYSPILQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVS------- 53
           M+ARA  +S    SP + S  +  + ++  P    RL       DR C FRVS       
Sbjct: 1   MNARAYLFS---FSPDFHSLHSHKASSDF-PLPKKRLFRFRFQ-DRTCVFRVSGRNAGEF 55

Query: 54  ----VRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLC 109
                R++      V  + VKF+EAL D+ L  EDL    E  VPWWE+FPKRW IV+LC
Sbjct: 56  TGLARREIGKVFAEVKSEQVKFQEALDDVVLGEEDL----EGDVPWWEQFPKRWVIVILC 111

Query: 110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK 169
           FSAFLLCNMDRVNMSIAILPMSAEFNW+P TVGLIQSSFFWGYLLTQIAGGIWADTVGGK
Sbjct: 112 FSAFLLCNMDRVNMSIAILPMSAEFNWSPTTVGLIQSSFFWGYLLTQIAGGIWADTVGGK 171

Query: 170 AVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERS 229
            VLGFGVVWWSIAT LTP+AAK+GLPFLLVVR FMGIGEGVAMPAMNNILSKWVPV+ERS
Sbjct: 172 LVLGFGVVWWSIATILTPIAAKIGLPFLLVVRAFMGIGEGVAMPAMNNILSKWVPVSERS 231

Query: 230 RSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP 289
           RSLALVYSGMYLGSVTGLAFSPFLIH FGWPSVFYSFGSLGTVW   WLSKA+SSP EDP
Sbjct: 232 RSLALVYSGMYLGSVTGLAFSPFLIHSFGWPSVFYSFGSLGTVWLATWLSKAYSSPLEDP 291

Query: 290 QLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYN 349
           +L P EKKLIVS+  +KEPVK IPW LILSKPPVWALI SHFCHNWGTFILLTWMPTYYN
Sbjct: 292 ELLPKEKKLIVSNSVTKEPVKKIPWRLILSKPPVWALIGSHFCHNWGTFILLTWMPTYYN 351

Query: 350 Q----------------------------------------------IMQSIGFLGPAFF 363
           Q                                              IMQ+IGFLGPAFF
Sbjct: 352 QVLKFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQTIGFLGPAFF 411

Query: 364 LTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVF 423
           LTQLSHV+SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV 
Sbjct: 412 LTQLSHVNSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVL 471

Query: 424 GTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 466
           GT ATGYILQHGSWDDVFKVSVGLYLVGT +WNLFSTGEK++D
Sbjct: 472 GTGATGYILQHGSWDDVFKVSVGLYLVGTVIWNLFSTGEKILD 514

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054558|ref|XP_002298320.1| predicted protein [Populus trichocarpa] gi|222845578|gb|EEE83125.1| predicted protein [Populus trichocarpa]

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/430 (81%), Positives = 366/430 (85%), Gaps = 48/430 (11%)

Query: 83  EDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVG 142
           +D G+DS   VPWWEEFPKRW IV+LCFSAFLLCNMDRVNMSIAILPMSAE+NWNPATVG
Sbjct: 4   DDAGLDST--VPWWEEFPKRWVIVILCFSAFLLCNMDRVNMSIAILPMSAEYNWNPATVG 61

Query: 143 LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV 202
           LIQSSFFWGYLLTQIAGGIWADTVGGK VLGFGV+WWSIATALTPVAAK GLPFLLVVR 
Sbjct: 62  LIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATALTPVAAKAGLPFLLVVRA 121

Query: 203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV 262
           FMGIGEGVAMPAMN ILSKWVPV+ERSRSLALVYSGMYLGSVTGL FSPFLIH+FGWPSV
Sbjct: 122 FMGIGEGVAMPAMNTILSKWVPVSERSRSLALVYSGMYLGSVTGLGFSPFLIHQFGWPSV 181

Query: 263 FYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP 322
           FYSFGSLGTVWF  WLSKAHSSP +DPQLRP EKKLI ++ +SKEPVK+IPWGLILSK P
Sbjct: 182 FYSFGSLGTVWFAAWLSKAHSSPLDDPQLRPEEKKLIFANSSSKEPVKSIPWGLILSKGP 241

Query: 323 VWALIVSHFCHNWGTFILLTWMPTYYNQ-------------------------------- 350
           VWALIVSHFCHNWGTFILLTWMPTYYNQ                                
Sbjct: 242 VWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAFSANLGGWIAD 301

Query: 351 --------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYS 396
                         IMQSIGFLGPAFFLTQLSH+DSPAMAVLCMACSQGTDAFSQSGLYS
Sbjct: 302 TLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYS 361

Query: 397 NHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN 456
           NHQDIAPRYSGVLLGLSNTAGVLAGVFGTA+TGYILQHGSWDDVFKVSVGLYLVGT VWN
Sbjct: 362 NHQDIAPRYSGVLLGLSNTAGVLAGVFGTASTGYILQHGSWDDVFKVSVGLYLVGTVVWN 421

Query: 457 LFSTGEKVVD 466
           LFSTGEK++D
Sbjct: 422 LFSTGEKILD 431

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539597|ref|XP_003538283.1| PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic-like [Glycine max]

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/458 (76%), Positives = 381/458 (83%), Gaps = 51/458 (11%)

Query: 56  DVKSESYNVSEKSVKFEEALKDIALRSEDLGVDS-ESLVPWWEEFPKRWFIVVLCFSAFL 114
           +VKSE  N+SE S K+E+ +  +  + +  G+D+ E    WW+ FPKRW IVVLCFSAFL
Sbjct: 58  NVKSEK-NLSE-SPKYEDDV--VVQKKKKRGLDNVEEEARWWQVFPKRWVIVVLCFSAFL 113

Query: 115 LCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF 174
           LCNMDRVNMSIAILPMSAE+NWNP+TVGLIQSSFFWGYLLTQIAGGIWADTVGGK VLGF
Sbjct: 114 LCNMDRVNMSIAILPMSAEYNWNPSTVGLIQSSFFWGYLLTQIAGGIWADTVGGKQVLGF 173

Query: 175 GVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLAL 234
           GVVWWS+ATALTP+AAKLGLPFLLV R FMGIGEGVAMPAMNNILSKWVPV+ERSRSLAL
Sbjct: 174 GVVWWSVATALTPIAAKLGLPFLLVARAFMGIGEGVAMPAMNNILSKWVPVSERSRSLAL 233

Query: 235 VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA 294
           VYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGTVW +VWLSKAHSSP EDP+LRP 
Sbjct: 234 VYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWCSVWLSKAHSSPLEDPELRPE 293

Query: 295 EKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ---- 350
           EKKLI ++C+SKEPVKTIPW LILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ    
Sbjct: 294 EKKLITANCSSKEPVKTIPWRLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKF 353

Query: 351 ------------------------------------------IMQSIGFLGPAFFLTQLS 368
                                                     IMQ+IGFLGPAFFLTQLS
Sbjct: 354 NLTESGLFCVLPWFIMAISANVGGWIADTLVSKGLSVTRVRKIMQTIGFLGPAFFLTQLS 413

Query: 369 HVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAAT 428
           H +SP MAVLCM CSQGTDAFSQSGLYSNHQDIAPRYSG+LLGLSNTAGVLAGVFGTAAT
Sbjct: 414 HANSPVMAVLCMTCSQGTDAFSQSGLYSNHQDIAPRYSGILLGLSNTAGVLAGVFGTAAT 473

Query: 429 GYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 466
           GYILQHGSWDDVFKVSVGLYLVGT V+NLFSTGEK+++
Sbjct: 474 GYILQHGSWDDVFKVSVGLYLVGTVVFNLFSTGEKILE 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346124|ref|XP_003637121.1| Sodium-dependent phosphate transport protein [Medicago truncatula] gi|355503056|gb|AES84259.1| Sodium-dependent phosphate transport protein [Medicago truncatula]

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/461 (75%), Positives = 372/461 (80%), Gaps = 51/461 (11%)

Query: 56  DVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVP----WWEEFPKRWFIVVLCFS 111
           DVKSE +   E S K+++      + S   GVD E  V     WWE FPKRW IV+LCFS
Sbjct: 57  DVKSEKHG-PEASSKYQDLAVHKKVVSGLDGVDVEEEVTESSSWWEVFPKRWVIVILCFS 115

Query: 112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV 171
           AFLLCNMDRVNMSIAILPMSAE+NWNP TVGL+QSSFFWGYLLTQIAGGIWADTVGGK V
Sbjct: 116 AFLLCNMDRVNMSIAILPMSAEYNWNPTTVGLVQSSFFWGYLLTQIAGGIWADTVGGKQV 175

Query: 172 LGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS 231
           L FGV+WWS+AT LTPVAAKLGLPFLLV R FMGIGEGVAMPAMNNILSKWVPVAERSRS
Sbjct: 176 LAFGVIWWSVATILTPVAAKLGLPFLLVARAFMGIGEGVAMPAMNNILSKWVPVAERSRS 235

Query: 232 LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 291
           LALVYSGMYLGSVTGLAFSPFLIH++GWPSVFYSFGSLGTVWF +WLSKAHSSP +DP++
Sbjct: 236 LALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFYSFGSLGTVWFCIWLSKAHSSPLDDPEM 295

Query: 292 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ- 350
           RP EKKLI ++  SKEPVK IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ 
Sbjct: 296 RPEEKKLIATNGFSKEPVKEIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV 355

Query: 351 ---------------------------------------------IMQSIGFLGPAFFLT 365
                                                        IMQ++GFLGPAFFLT
Sbjct: 356 LKFNLTESGLFCVLPWLTMAISANFGGWIADTLVTRGVSVTRVRKIMQTVGFLGPAFFLT 415

Query: 366 QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGT 425
           QLSH+DSP +AVLCM CSQGTDAFSQSGLYSNHQDIAPRYSG+LLGLSNTAGVLAGV GT
Sbjct: 416 QLSHIDSPVVAVLCMTCSQGTDAFSQSGLYSNHQDIAPRYSGILLGLSNTAGVLAGVLGT 475

Query: 426 AATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 466
           AATGYILQHGSWDDVFKVSVGLYLVGT VWNLFSTGEK++D
Sbjct: 476 AATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKIID 516

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826359|ref|XP_002881062.1| hypothetical protein ARALYDRAFT_481880 [Arabidopsis lyrata subsp. lyrata] gi|297326901|gb|EFH57321.1| hypothetical protein ARALYDRAFT_481880 [Arabidopsis lyrata subsp. lyrata]

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/524 (69%), Positives = 394/524 (75%), Gaps = 70/524 (13%)

Query: 1   MSARALFYSPILQS------PPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSV 54
           M+ARAL  SP L S      PP     ++  R  L+P     L + +   +R   FRV V
Sbjct: 1   MNARALLCSPNLHSLYTSNRPPEKPTSSRSLRT-LKP-APNSLRVWIYPRNRSGVFRVLV 58

Query: 55  RDVK----SESYNVSEKSVKFEEALKDIALRSEDLGVDSES--LVPWWEEFPKRWFIVVL 108
           R       S SY V  + V           R+  +  DS S  +VPWWEEFPKRW IV+L
Sbjct: 59  RSSDKRESSNSYYVDGERVN----------RTNGVVSDSPSSIVVPWWEEFPKRWVIVLL 108

Query: 109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG 168
           CFSAFLLCNMDRVNMSIAILPMSAE+ WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG
Sbjct: 109 CFSAFLLCNMDRVNMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG 168

Query: 169 KAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAER 228
           K VLGFGV+WWSIAT LTPVAAKLGLP+LLVVR FMG+GEGVAMPAMNNILSKWVPV ER
Sbjct: 169 KRVLGFGVIWWSIATILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQER 228

Query: 229 SRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED 288
           SRSLALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGTVW T+WL+KA SSP ED
Sbjct: 229 SRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLED 288

Query: 289 PQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY 348
           P L P E+KLIV +CASKEPVK+IPW LILSKPPVWALI  HFCHNWGTFILLTWMPTYY
Sbjct: 289 PTLLPEERKLIVDNCASKEPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYY 348

Query: 349 NQ----------------------------------------------IMQSIGFLGPAF 362
           +Q                                              IMQ+IGFLGPAF
Sbjct: 349 HQVLKFNLMESGLLSVFPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAF 408

Query: 363 FLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV 422
           FLTQL H+DSP MAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV
Sbjct: 409 FLTQLKHIDSPTMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV 468

Query: 423 FGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 466
            GTAATG+ILQHGSWDDVF +SVGLYLVGT VWNLFSTGEK++D
Sbjct: 469 LGTAATGHILQHGSWDDVFTISVGLYLVGTVVWNLFSTGEKIID 512

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281837|dbj|BAJ33784.1| unnamed protein product [Thellungiella halophila] gi|312281881|dbj|BAJ33806.1| unnamed protein product [Thellungiella halophila]

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/524 (68%), Positives = 390/524 (74%), Gaps = 72/524 (13%)

Query: 1   MSARALFYSPILQS------PPYISARN----KLSRAELRPRGLPRLLLGVLSGDRVCSF 50
           M+ARAL  SP L S      PP  S+RN    K     LR    PR        +R   F
Sbjct: 1   MNARALLCSPNLHSLYTSNRPPETSSRNRRILKSDPKSLRVWIYPR--------NRSAVF 52

Query: 51  RVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESL--VPWWEEFPKRWFIVVL 108
           RV VR         S   V  +   K+I  R+   GV S+SL  +PWW+EFPKRW IV+L
Sbjct: 53  RVLVRSSDKGEIGNSNAEVYVD---KEIVTRN---GVASDSLSSLPWWKEFPKRWVIVLL 106

Query: 109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG 168
           CFSAFLLCNMDRVNMSIAILPMSAE+ WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG
Sbjct: 107 CFSAFLLCNMDRVNMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG 166

Query: 169 KAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAER 228
           K VLGFGV+WWSIAT LTP+AAKLGLPFLLVVR FMG+GEGVAMPAMNN+LSKWVPV ER
Sbjct: 167 KMVLGFGVIWWSIATILTPIAAKLGLPFLLVVRAFMGVGEGVAMPAMNNLLSKWVPVQER 226

Query: 229 SRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED 288
           SRSLALVYSGMY+GSV GLAFSPFLIH+FGWPSVFY FGSLGTVW T+WL+KA SSP ED
Sbjct: 227 SRSLALVYSGMYIGSVIGLAFSPFLIHQFGWPSVFYCFGSLGTVWLTLWLTKAESSPVED 286

Query: 289 PQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY 348
             L P E+KLI  +CASKEPVK+IPW LILSKPPVWALI  HFCHNWGTFILLTWMPTYY
Sbjct: 287 LTLLPQERKLIADNCASKEPVKSIPWRLILSKPPVWALICCHFCHNWGTFILLTWMPTYY 346

Query: 349 NQ----------------------------------------------IMQSIGFLGPAF 362
           +Q                                              IMQ+IGFLGPAF
Sbjct: 347 HQVLKFNLMESGLLSVFPWLTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAF 406

Query: 363 FLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV 422
           FLTQL H+DSP MAVLCMACSQG DAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV
Sbjct: 407 FLTQLKHIDSPTMAVLCMACSQGLDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV 466

Query: 423 FGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 466
            GTAATG+ILQHGSWDDVF +SVGLYLVGT VWNLFSTGEK++D
Sbjct: 467 LGTAATGHILQHGSWDDVFTISVGLYLVGTVVWNLFSTGEKIID 510

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500962|gb|AFK38547.1| unknown [Medicago truncatula]

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/461 (74%), Positives = 371/461 (80%), Gaps = 51/461 (11%)

Query: 56  DVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVP----WWEEFPKRWFIVVLCFS 111
           DVKSE +   E S K+++      + S    VD E  V     WWE FPKRW IV+LCFS
Sbjct: 57  DVKSEKHG-PEASSKYQDLAVHKKVVSGLDSVDVEEEVTESSSWWEVFPKRWVIVILCFS 115

Query: 112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV 171
           AFLLCNMDRVNMSIAILPMSAE+NWNP TVGL+QSSFFWGYLLTQIAGGIW+DTVGGK V
Sbjct: 116 AFLLCNMDRVNMSIAILPMSAEYNWNPTTVGLVQSSFFWGYLLTQIAGGIWSDTVGGKQV 175

Query: 172 LGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS 231
           L FGV+WWS+AT LTPVAAKLGLPFLLV R FMGIGEGVAMPAMNNILSKWVPVAERSRS
Sbjct: 176 LAFGVIWWSVATILTPVAAKLGLPFLLVARAFMGIGEGVAMPAMNNILSKWVPVAERSRS 235

Query: 232 LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 291
           LALVYSGMYLGSVTGLAFSPFLIH++GWPSVFYSFGSLGTVWF +WLSKAHSSP +DP++
Sbjct: 236 LALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFYSFGSLGTVWFCIWLSKAHSSPLDDPEM 295

Query: 292 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ- 350
           RP EKKLI ++  SKEPVK IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ 
Sbjct: 296 RPEEKKLIATNGFSKEPVKEIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV 355

Query: 351 ---------------------------------------------IMQSIGFLGPAFFLT 365
                                                        IMQ++GFLGPAFFLT
Sbjct: 356 LKFNLTESGLFCVLPWLTMAISANFGGWIADTLVTRGVSVTRVRKIMQTVGFLGPAFFLT 415

Query: 366 QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGT 425
           QLSH+DSP +AVLCM CSQGTDAFSQSGLYSNHQDIAPRYSG+LLGLSNTAGVLAGV GT
Sbjct: 416 QLSHIDSPVVAVLCMTCSQGTDAFSQSGLYSNHQDIAPRYSGILLGLSNTAGVLAGVLGT 475

Query: 426 AATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 466
           AATGYILQHGSWDDVFKVSVGLYLVGT VWNLFSTGEK++D
Sbjct: 476 AATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKIID 516

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	466
TAIR|locus:2060694	512	PHT4;1 "AT2G29650" [Arabidopsi	0.648	0.589	0.788	2.2e-189
TAIR|locus:2126066	541	ANTR2 "AT4G00370" [Arabidopsis	0.663	0.571	0.704	1.2e-177
TAIR|locus:2065615	512	PHT4;2 "AT2G38060" [Arabidopsi	0.590	0.537	0.376	3.2e-77
UNIPROTKB|Q5ZL94	484	SLC17A5 "Uncharacterized prote	0.484	0.466	0.415	5.1e-68
UNIPROTKB|E1B7R3	495	SLC17A5 "Uncharacterized prote	0.497	0.468	0.392	3.9e-66
UNIPROTKB|E2R8R4	495	SLC17A5 "Uncharacterized prote	0.472	0.444	0.402	5e-66
UNIPROTKB|F1RQG9	497	SLC17A5 "Uncharacterized prote	0.484	0.454	0.403	4.9e-64
RGD|620531	582	Slc17a6 "solute carrier family	0.572	0.458	0.346	8.8e-59
WB|WBGene00022647	479	ZK54.1b [Caenorhabditis elegan	0.579	0.563	0.339	8.8e-59
UNIPROTKB|A4FV52	560	SLC17A7 "Vesicular glutamate t	0.575	0.478	0.344	1.1e-58

TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)]

 Score = 1284 (457.0 bits), Expect = 2.2e-189, Sum P(2) = 2.2e-189
 Identities = 246/312 (78%), Positives = 266/312 (85%)

Query:    45 DRVCSFRVSVRDV-KSESYNVSEKSVKFEEALKDIALRSEDLGVDSES--LVPWWEEFPK 101
             +R   FRV VR   KSES N    S   E    D    + D+  DS S  ++PWWEEFPK
Sbjct:    49 NRSSVFRVLVRSSDKSESSN----SYYVEG---DKVSGNNDVVSDSPSSIVLPWWEEFPK 101

Query:   102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGI 161
             RW IV+LCFSAFLLCNMDRVNMSIAILPMSAE+ WNPATVGLIQSSFFWGYLLTQIAGGI
Sbjct:   102 RWVIVLLCFSAFLLCNMDRVNMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGI 161

Query:   162 WADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSK 221
             WADTVGGK VLGFGV+WWSIAT LTPVAAKLGLP+LLVVR FMG+GEGVAMPAMNNILSK
Sbjct:   162 WADTVGGKRVLGFGVIWWSIATILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNILSK 221

Query:   222 WVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA 281
             WVPV ERSRSLALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGTVW T+WL+KA
Sbjct:   222 WVPVQERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKA 281

Query:   282 HSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL 341
              SSP EDP L P E+KLI  +CASKEPVK+IPW LILSKPPVWALI  HFCHNWGTFILL
Sbjct:   282 ESSPLEDPTLLPEERKLIADNCASKEPVKSIPWRLILSKPPVWALISCHFCHNWGTFILL 341

Query:   342 TWMPTYYNQIMQ 353
             TWMPTYY+Q+++
Sbjct:   342 TWMPTYYHQVLK 353

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0030504 "inorganic diphosphate transmembrane transporter activity" evidence=IGI

GO:0009416 "response to light stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)]

 Score = 1198 (426.8 bits), Expect = 1.2e-177, Sum P(2) = 1.2e-177
 Identities = 219/311 (70%), Positives = 256/311 (82%)

Query:    45 DRVCSFRVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDS--ESLVPWWEEFPKR 102
             D V  FR S++  +S +Y  SE+S   E  +      +E + V+   ++  PWW++FP+R
Sbjct:    72 DSVIRFRNSIKINRSRAYYKSEESDITEGVVPSADGSAEAILVEGNLQNASPWWQQFPRR 131

Query:   103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIW 162
             W IV+LCFS+FLLCNMDRVNMSIAILPMS E+NW+ ATVGLIQSSFFWGYLLTQI GGIW
Sbjct:   132 WVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQILGGIW 191

Query:   163 ADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW 222
             AD  GGK VLGFGVVWWS AT +TP+AA+LGLPFLLVVR FMGIGEGVAMPAMNN+LSKW
Sbjct:   192 ADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNMLSKW 251

Query:   223 VPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH 282
             +PV+ERSRSLALVYSGMYLGSVTGLAFSP LI +FGWPSVFYSFGSLG++WF +WL  A+
Sbjct:   252 IPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKFAY 311

Query:   283 SSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT 342
             SSP +DP L   EKK+I+     +EPV  IPW LILSKPPVWALI+SHFCHNWGTFILLT
Sbjct:   312 SSPKDDPDLSEEEKKVILGGSKPREPVTVIPWKLILSKPPVWALIISHFCHNWGTFILLT 371

Query:   343 WMPTYYNQIMQ 353
             WMPTYYNQ+++
Sbjct:   372 WMPTYYNQVLK 382

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 3.2e-77, Sum P(2) = 3.2e-77
 Identities = 107/284 (37%), Positives = 168/284 (59%)

Query:    86 GVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQ 145
             G  SE++       P+R  +V+L      LCN DRV MS+A++P++ +  W+ + +G++Q
Sbjct:    82 GGGSEAIAEVRTMMPERIKVVILTACMMCLCNADRVVMSVAVVPLADKLGWSSSFLGVVQ 141

Query:   146 SSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMG 205
             SSF WGY+ + + GG   D  GGK VL +GV  WS+AT LTP AA      LL VR F G
Sbjct:   142 SSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHSTLALLCVRAFFG 201

Query:   206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS 265
             + EGVAMP+M  +LS+W P+ ER+ ++ +  +G ++G+V GL  +P ++   G    F  
Sbjct:   202 LAEGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFIL 261

Query:   266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVS------SCASKEPVKTIPWGLILS 319
             F SLG +W + W S   ++P + P +  +E +LI +      S  S +P  ++   L+LS
Sbjct:   262 FASLGLLWVSTWSSGVTNNPQDSPFITRSELRLIQAGKPVQPSTISPKPNPSLR--LLLS 319

Query:   320 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQIMQSIGFLGPAFF 363
             K P WA+I ++  +NWG F+LL+WMP Y+  +  ++     A+F
Sbjct:   320 KLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVF-NVNLKQAAWF 362

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 505 (182.8 bits), Expect = 5.1e-68, Sum P(3) = 5.1e-68
 Identities = 96/231 (41%), Positives = 141/231 (61%)

Query:   133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL 192
             +++W+  T G I  SFF+GY++TQI GG  A  +GGK +LGFG+   S+ T LTP+AA L
Sbjct:    89 KYSWDADTQGWILGSFFYGYIITQIPGGYLASKIGGKLLLGFGIFGTSVFTLLTPLAADL 148

Query:   193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF 252
             G+ +L+ VR   G+GEGV  PAM+++ S W P  ERS+ L++ Y+G  LG+V  L  S  
Sbjct:   149 GVGYLIAVRALEGLGEGVTFPAMHSMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGL 208

Query:   253 LIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKT 311
             + +   W  VFY FG+LG +WF  W+      P     +   E++ I+SS   +    K+
Sbjct:   209 ICYYMNWVYVFYIFGALGVLWFFFWMWLVSDKPETHKSISRIEREYILSSLKDQLSTQKS 268

Query:   312 IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQIM----QSIGFL 358
             +PW  IL   P+WA++V+HF +NW  + LLT +PTY  +I+    Q  GFL
Sbjct:   269 VPWRPILESLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFDAQENGFL 319

GO:0016021 "integral to membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

UNIPROTKB|E1B7R3 SLC17A5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 486 (176.1 bits), Expect = 3.9e-66, Sum P(3) = 3.9e-66
 Identities = 93/237 (39%), Positives = 140/237 (59%)

Query:   133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL 192
             ++ W+  T G I  SFF+GY++TQI GG  A   GGK +LGFGV+  ++ T  TP+AA  
Sbjct:   100 KYQWDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGVLGTAVFTLFTPLAADF 159

Query:   193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF 252
             G   L+ +R   G+GEGV  PAM+ + S W P  ERS+ L++ Y+G  LG+V  L  S  
Sbjct:   160 GFGALVALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGV 219

Query:   253 LIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKT 311
             + +   W  VFY FG +G +WF +W+     +P     + P EK+ I+SS  ++    K+
Sbjct:   220 ICYYMNWTYVFYFFGLVGIIWFILWICLVSDTPETHKTITPYEKEYILSSLKNQLSSQKS 279

Query:   312 IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQIM----QSIGFLGPAFFL 364
             +PW  +L   P+WA++V+HF +NW  + LLT +PTY  +++    Q  GFL    +L
Sbjct:   280 VPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPYL 336

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 483 (175.1 bits), Expect = 5.0e-66, Sum P(3) = 5.0e-66
 Identities = 89/221 (40%), Positives = 135/221 (61%)

Query:   134 FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLG 193
             + W+  T G I  SFF+GY++TQI GG  A  VGGK +LGFG++  ++ T  TP+AA  G
Sbjct:   101 YQWDAETQGWILGSFFYGYIITQIPGGYIASKVGGKLLLGFGILGTAVFTLFTPIAADFG 160

Query:   194 LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL 253
             +  L+V+R   G+GEGV  PAM+ + S W P  ERS+ L++ Y+G  LG+V  L  S  +
Sbjct:   161 VGALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGII 220

Query:   254 IHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKTI 312
                  W  VFY FG +G +WF +W+     +P     +   EK+ I+SS  ++    K++
Sbjct:   221 CFYMNWTYVFYLFGIVGIIWFILWIFLVSETPETHKTISRQEKEYILSSLKNQLSSQKSV 280

Query:   313 PWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQIMQ 353
             PW  +L   P+WA++V+HF +NW  + LLT +PTY  +I++
Sbjct:   281 PWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILR 321

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RQG9 SLC17A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 477 (173.0 bits), Expect = 4.9e-64, Sum P(3) = 4.9e-64
 Identities = 94/233 (40%), Positives = 138/233 (59%)

Query:   133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL 192
             ++ WN  T G I  SFF+GY++TQI GG  A   GGK +LGFG++  S+ T LTP+AA  
Sbjct:   100 KYQWNAETQGWILGSFFYGYIITQIPGGYIASRSGGKLLLGFGILGTSVFTLLTPLAADF 159

Query:   193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYS--GMYLGSVTGLAFS 250
             G+  L+ +R   G+GEGV  PAM+ + S W P  ERS+ L++ Y+  G  LG+V  L  S
Sbjct:   160 GVGALIALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAVLGAQLGTVVSLPLS 219

Query:   251 PFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPV 309
               +     W  VFY FG +G +WF +W      +P     + P EK+ I+SS  ++    
Sbjct:   220 GIICFYLNWTYVFYLFGLVGIIWFILWTWLVSDTPDTHRTISPYEKEYILSSLRNQLSSQ 279

Query:   310 KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQIM----QSIGFL 358
             K++PW  +L   P+WA++V+HF +NW  + LLT +PTY  +++    Q  GFL
Sbjct:   280 KSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFL 332

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|620531 Slc17a6 "solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6" [Rattus norvegicus (taxid:10116)]

 Score = 466 (169.1 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
 Identities = 102/294 (34%), Positives = 153/294 (52%)

Query:   100 PKRWFIVVL-----CFSAFLLCNM-----DRVNMSIA-----ILPMSAEFNWNPATVGLI 144
             P+R+ I ++     C S  + CN+     D VN S       ++   A+FNW+P TVG+I
Sbjct:    68 PRRYIIAIMSGLGFCISFGIRCNLGVAIVDMVNNSTIHRGGKVIKEKAKFNWDPETVGMI 127

Query:   145 QSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFM 204
               SFFWGY++TQI GG  A  +    V G  ++  S    L P AA++    ++ VR+  
Sbjct:   128 HGSFFWGYIITQIPGGYIASRLAANRVFGAAILLTSTLNMLIPSAARVHYGCVIFVRILQ 187

Query:   205 GIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY 264
             G+ EGV  PA + I SKW P  ERSR     + G Y G+V  +  +  L+   GW SVFY
Sbjct:   188 GLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGILVQYTGWSSVFY 247

Query:   265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-------EPVKTIPWGLI 317
              +GS G VW+  WL  ++ SPA+ P +   E++ I  S           E  KT PW   
Sbjct:   248 VYGSFGMVWYMFWLLVSYESPAKHPTITDEERRYIEESIGESANLLGAMEKFKT-PWRKF 306

Query:   318 LSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQIMQSIGF-LGPAFFLTQLSHV 370
              +  PV+A+IV++FC +W  ++LL   P Y+ ++    GF +     L+ + H+
Sbjct:   307 FTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVF---GFEISKVGMLSAVPHL 357

GO:0001504 "neurotransmitter uptake" evidence=IEA;ISO;TAS

GO:0003333 "amino acid transmembrane transport" evidence=ISO

GO:0005313 "L-glutamate transmembrane transporter activity" evidence=IEA;ISO;IDA

GO:0005769 "early endosome" evidence=IDA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA;ISO;TAS

GO:0015293 "symporter activity" evidence=IEA

GO:0015807 "L-amino acid transport" evidence=ISO

GO:0015813 "L-glutamate transport" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

WB|WBGene00022647 ZK54.1b [Caenorhabditis elegans (taxid:6239)]

 Score = 457 (165.9 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
 Identities = 99/292 (33%), Positives = 153/292 (52%)

Query:    76 KDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSA--- 132
             +D+ +R     +D E+L    + + +R  + +L    F      R N+SIAI+ M++   
Sbjct:    17 EDVNIRR---AIDDEALES--KRWKRRHVVAILALLGFANIYAMRANLSIAIVEMTSGTE 71

Query:   133 ------------EF-NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW 179
                         +F NW P T G++ SSFF+GY+++Q+ GG  A T G K +   G    
Sbjct:    72 RKVNGTTLHVLGDFENWTPMTQGVVLSSFFYGYIVSQLPGGYLAYTHGAKTIFFAGTFGT 131

Query:   180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGM 239
             ++ T LTP  A++G   L+  R   G+ EGV  PAM+ I S+W P  E+++     +SG 
Sbjct:   132 AVFTLLTPPFARMGYGMLVFARFMEGLLEGVTYPAMHVIWSRWAPPMEQTKLATFAFSGS 191

Query:   240 YLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLI 299
             Y G+V  +  S +L   FGWP +F+ FG+LG +W  VW    H  P +DP++  +E  L+
Sbjct:   192 YFGTVVAMPLSAYLGEHFGWPMIFWFFGALGVIWCMVWYKTVHDRPEDDPKISTSELALL 251

Query:   300 VSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQI 351
                  S+     +PW  IL   PVWA+IV+H   N G +I+LT +P     I
Sbjct:   252 QRDAVSQNHY-IVPWAQILRSKPVWAVIVAHSAQNLGFYIMLTNLPKMLKDI 302

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016529 "sarcoplasmic reticulum" evidence=IDA

UNIPROTKB|A4FV52 SLC17A7 "Vesicular glutamate transporter 1" [Bos taurus (taxid:9913)]

 Score = 462 (167.7 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
 Identities = 101/293 (34%), Positives = 148/293 (50%)

Query:   100 PKRWFIVVL-----CFSAFLLCNM-----DRVNMSIA-----ILPMSAEFNWNPATVGLI 144
             P+R+ I ++     C S  + CN+       VN S       ++   A+FNW+P TVGLI
Sbjct:    60 PRRYIIAIMSGLGFCISFGIRCNLGVAIVSMVNNSTTHRGGHVVMQKAQFNWDPETVGLI 119

Query:   145 QSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFM 204
               SFFWGY++TQI GG          V GF +V  S    L P AA++    ++ VR+  
Sbjct:   120 HGSFFWGYIVTQIPGGFICQKFAANRVFGFAIVATSTLNMLIPSAARVHYGCVIFVRILQ 179

Query:   205 GIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY 264
             G+ EGV  PA + I SKW P  ERSR     + G Y G+V  +  +  L+   GW SVFY
Sbjct:   180 GLVEGVTYPACHGIWSKWAPPLERSRLATTAFCGSYAGAVVAMPLAGVLVQYSGWSSVFY 239

Query:   265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK----EPVKTI--PWGLIL 318
              +GS G  W+  WL  ++ SPA  P +   E+K I  +         PV     PW    
Sbjct:   240 VYGSFGIFWYLFWLLVSYESPALHPSISEEERKYIEDAIGESAKLMNPVTKFNTPWRRFF 299

Query:   319 SKPPVWALIVSHFCHNWGTFILLTWMPTYYNQIMQSIGF-LGPAFFLTQLSHV 370
             +  PV+A+IV++FC +W  ++LL   P Y+ ++    GF +     ++ L H+
Sbjct:   300 TSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVF---GFEISKVGLVSALPHL 349

GO:0043005 "neuron projection" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0060079 "regulation of excitatory postsynaptic membrane potential" evidence=IEA

GO:0060076 "excitatory synapse" evidence=IEA

GO:0051938 "L-glutamate import" evidence=IEA

GO:0048786 "presynaptic active zone" evidence=IEA

GO:0042137 "sequestering of neurotransmitter" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015319 "sodium:inorganic phosphate symporter activity" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SDI4	PHT41_ORYSJ	No assigned EC number	0.7927	0.7918	0.6975	yes	no
O82390	ANTR1_ARATH	No assigned EC number	0.6871	0.9806	0.8925	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	466
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	2e-48
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-34
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-32
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	8e-32
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-18
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	4e-14
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	3e-12
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	6e-09
TIGR02332	412	TIGR02332, HpaX, 4-hydroxyphenylacetate permease	1e-08
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	5e-08
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	1e-07
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	4e-07
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-04
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	4e-04
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	7e-04
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	0.002
COG0477	338	COG0477, ProP, Permeases of the major facilitator	0.002
PRK05122	399	PRK05122, PRK05122, major facilitator superfamily	0.003

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  172 bits (437), Expect = 2e-48
 Identities = 102/384 (26%), Positives = 160/384 (41%), Gaps = 54/384 (14%)

Query: 133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL 192
            F W+ A  GLI SS F+G ++ QI  G  A     K  +G G+   S+ + + P AA  
Sbjct: 70  NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG 129

Query: 193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF 252
           G+  ++  RV  G+ +G   PA + I+ KW P  ERSR L +  SG  LG+   L  S +
Sbjct: 130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGW 189

Query: 253 LI-HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSC-ASKEPV- 309
           L     GWP +FY FG +G  W  +W       P+  P +   EKK I SS    K    
Sbjct: 190 LCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTR 249

Query: 310 KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ------------------- 350
           +++P   I    PVWA+  + F H W   IL T++PT+ +                    
Sbjct: 250 QSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLF 309

Query: 351 ----------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC 382
                                       I   IG LGP  F   L ++ +     + +  
Sbjct: 310 AWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILT 369

Query: 383 -SQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVF 441
            +    +   +G+  N  D+APR+ G + G++   G + G+  +   G IL   S +   
Sbjct: 370 LANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWL 429

Query: 442 KVSV---GLYLVGTAVWNLFSTGE 462
            V +    + ++    + +F + E
Sbjct: 430 IVFLIMAFVNILCVIFYLIFGSAE 453

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score =  131 bits (331), Expect = 2e-34
 Identities = 85/358 (23%), Positives = 137/358 (38%), Gaps = 52/358 (14%)

Query: 108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG 167
           L  +AFL      +      L ++ +   +P  +GL+ ++F  GY L Q   G  +D  G
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60

Query: 168 GKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE 227
            + VL  G++ +++   L   A+   L  LLV+RV  G+G G   PA   +++ W P  E
Sbjct: 61  RRRVLLIGLLLFALGLLLLLFAS--SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEE 118

Query: 228 RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE 287
           R R+L L+ +G  LG+  G      L   FGW + F     L  +   +        P E
Sbjct: 119 RGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPE 178

Query: 288 DPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY 347
             + +PAE+           P   +P   +L + PV  L+++     +  F LLT++P Y
Sbjct: 179 SKRPKPAEEA----------PAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLY 228

Query: 348 YNQ---------------------------------------IMQSIGFLGPAFFLTQLS 368
                                                     ++  +  +  A  L  LS
Sbjct: 229 QEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLS 288

Query: 369 HVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGT 425
             +S    ++ +             L +   D+AP    G   GL NTAG L G  G 
Sbjct: 289 LTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score =  125 bits (317), Expect = 2e-32
 Identities = 89/392 (22%), Positives = 147/392 (37%), Gaps = 80/392 (20%)

Query: 106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT 165
           ++L F  F L  +DR  +S A+  ++ +   + +  GLI S+F  GY L  +  G  +D 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 166 VGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV 225
            G + VL  G++ +++ + L   A    L  LLV R  +G+G G   PA   ++++W P 
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFA--SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 226 AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP 285
            ER R+L L  +G  LG++ G      L    GW  +F     LG +   + L       
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLL------- 171

Query: 286 AEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP 345
                                                +  L ++ F  ++G + LLT++P
Sbjct: 172 --------------------------------FLLRLLLLLALAFFLLSFGYYGLLTYLP 199

Query: 346 TYYNQ--------------------------------------IMQSIGFLGPAFFLTQL 367
            Y  +                                      ++  IG L  A  L  L
Sbjct: 200 LYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLL 259

Query: 368 SHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTA 426
           +   S A+ ++ +        F+   L +   ++AP    G   GL NT G L G  G  
Sbjct: 260 ALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPL 319

Query: 427 ATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 458
             G +L  G +  VF +   L L+   +  L 
Sbjct: 320 LAGLLLDTGGYGGVFLILAALALLAALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score =  125 bits (316), Expect = 8e-32
 Identities = 92/393 (23%), Positives = 146/393 (37%), Gaps = 54/393 (13%)

Query: 112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV 171
             ++  +DR N+S A   +  +   + A  G + S+F WGY++ Q  GG   D  G +  
Sbjct: 2   VTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKT 61

Query: 172 LGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS 231
           L   +V W + T L   A       L ++RV +G  E    P +  I++ W P +ER+ +
Sbjct: 62  LAVFIVIWGVFTGLQAFAG--AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATA 119

Query: 232 LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 291
           +++  S   LG + G     +++  F W   F   G LG +W  +WL      P +   L
Sbjct: 120 VSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWL 179

Query: 292 RPAEKKLIV----SSCASKEPVKTIPWGL--ILSKPPVWALIVSHFCHNWGTFILLTWMP 345
              EK ++V    +    K P     + +  +L    VW L +  F  N G    LTW P
Sbjct: 180 TEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFP 239

Query: 346 TYYNQIMQS----IGFLG----------------------------------------PA 361
           TY  Q         GF+                                           
Sbjct: 240 TYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVL 299

Query: 362 FFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS-GVLLGLSNTAGVLA 420
             L   ++  +   A L +         + +  ++   D AP    G+  GL N+ G L 
Sbjct: 300 SLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLG 359

Query: 421 GVFGTAATGYIL-QHGSWDDVFKVSVGLYLVGT 452
           G+ G    G I    GS+     V   L L+G 
Sbjct: 360 GIVGPIVIGAIAATTGSFAGALMVVAALALIGA 392

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 61/266 (22%), Positives = 114/266 (42%), Gaps = 22/266 (8%)

Query: 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAG 159
             +W  ++L F   L+   D   M  A   +SAE+  +P  +G + S+   G     +  
Sbjct: 13  RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFF 72

Query: 160 GIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNIL 219
           G  AD +G + VL + ++ +S+ T L  +A    +  LL++R   G+G G  MP +N ++
Sbjct: 73  GPLADRIGRRRVLLWSILLFSVFTLLCALAT--NVTQLLILRFLAGLGLGGLMPNLNALV 130

Query: 220 SKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS 279
           S++ P   R  ++ L++ G  +G+  G   + +LI  FGW S+FY  G +  +   + L 
Sbjct: 131 SEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFY-VGGIAPLLLLLLLM 189

Query: 280 KAHSSPAEDPQLRPAEKKL-IVSSCA---------------SKEPVKTIPWGLILSKPPV 323
           +      +    +  E    IV++ A               + +  K   +  +      
Sbjct: 190 RFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTA 249

Query: 324 WA---LIVSHFCHNWGTFILLTWMPT 346
                L + +F    G + L  W+P 
Sbjct: 250 RITVLLWLLYFMLLVGVYFLTNWLPK 275

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 73.6 bits (181), Expect = 4e-14
 Identities = 46/249 (18%), Positives = 89/249 (35%), Gaps = 12/249 (4%)

Query: 110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK 169
           F  +    + R N ++A+  +  E   +   +GL+ SSF   Y +++   G  +D    +
Sbjct: 1   FIGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR 60

Query: 170 AVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERS 229
             L  G++  +I            L  +  +    GI +G+  P     ++KW   +ER 
Sbjct: 61  VFLPIGLILCAIVNLF--FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERG 118

Query: 230 RSLALVYSGMYLGS--VTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE 287
             ++       +G   +  L         + W  VF   G +  +   +       SP +
Sbjct: 119 TWVSFWNCSHNVGGGLLPPLVLFGIAEL-YSWHWVFIVPGIIAIIVSLICFLLLRDSP-Q 176

Query: 288 DPQLRPAEKKLI--VSSCASKEPVKTIPWGL----ILSKPPVWALIVSHFCHNWGTFILL 341
              L PAE+         A K+  +     +    +L    +W + + +         +L
Sbjct: 177 SCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGIL 236

Query: 342 TWMPTYYNQ 350
            W P Y  Q
Sbjct: 237 DWSPLYLTQ 245

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 67.7 bits (166), Expect = 3e-12
 Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 8/162 (4%)

Query: 106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT 165
           + LCF   LL  +D  +  +A   M+ EF  + A +G   S+   G L   + GG  AD 
Sbjct: 17  IGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR 76

Query: 166 VGGKAVLGFGVVWW---SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW 222
           +G K +L   V  +   S+ATA          P LLV R+  G+G G A+P +  + S+ 
Sbjct: 77  IGRKRILIVSVALFGLFSLATAQAW-----DFPSLLVARLLTGVGLGGALPNLIALTSEA 131

Query: 223 VPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY 264
           V    R  +++L+Y G+  G                W  +FY
Sbjct: 132 VGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFY 173

Length = 406

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 5/181 (2%)

Query: 99  FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIA 158
             +   ++ L F            ++   L +      + A  GL+ S F  G +L  + 
Sbjct: 173 LLRLLLLLALAFFLLSFGYY--GLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALL 230

Query: 159 GGIWADTVGGK-AVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNN 217
           GG+ +D +G +  +L  G++  ++   L  +A  L L  + ++   +G G G A PA+  
Sbjct: 231 GGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALL--LLGFGLGFAFPALLT 288

Query: 218 ILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW 277
           + S+  P   R  +  L  +   LG   G   +  L+   G+  VF    +L  +   + 
Sbjct: 289 LASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348

Query: 278 L 278
           L
Sbjct: 349 L 349

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 2/150 (1%)

Query: 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD 164
           +++  F  F+   +DR+N+  A L M  +   +    GL  + F+  Y++  I   I   
Sbjct: 9   LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLA 68

Query: 165 TVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP 224
            +G +  +   +V W IA+  T  A   G   L ++R+ +GI E   +P +   L+ W P
Sbjct: 69  IIGARRWIAGIMVLWGIASTATMFAT--GPESLYLLRILVGIAEAGFLPGILLYLTFWFP 126

Query: 225 VAERSRSLALVYSGMYLGSVTGLAFSPFLI 254
              R+R+ AL    M +    GL  S +++
Sbjct: 127 AYFRARANALFMIAMPVTMALGLILSGYIL 156

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 54.5 bits (132), Expect = 5e-08
 Identities = 49/260 (18%), Positives = 101/260 (38%), Gaps = 36/260 (13%)

Query: 123 MSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI 181
           + + +LP ++A+   +    G + +++  G  L      +    +  + +L   +  + +
Sbjct: 31  VPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90

Query: 182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL 241
           +  L+ +A       LL+ R   G+  GV       + ++ VP  +R R+LALV++G+ L
Sbjct: 91  SNLLSALAP--SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTL 148

Query: 242 GSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVS 301
            +V G+    FL   FGW + F +   L  +     L      P  +           + 
Sbjct: 149 ATVLGVPLGTFLGQLFGWRATFLAIAVLALL---ALLLLWKLLPPSEISGSLPGPLRTLL 205

Query: 302 SCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQIMQSIGFLGPA 361
                          +L +P V   +++ F    G F L T              ++ P 
Sbjct: 206 R--------------LLRRPGVLLGLLATFLFMTGHFALYT--------------YIRP- 236

Query: 362 FFLTQLSHVDSPAMAVLCMA 381
            FL  ++     A++++ +A
Sbjct: 237 -FLESVAGFSVSAVSLVLLA 255

Length = 394

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 52/270 (19%), Positives = 100/270 (37%), Gaps = 30/270 (11%)

Query: 101 KRWFIVVLC-----FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLT 155
           KRW I +       ++AF L    R N ++A+  +  +   +   +G++ S+F   Y ++
Sbjct: 24  KRWRIQIFLSIFIGYAAFYLT---RKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVS 80

Query: 156 QIAGGIWADTVGGKAVLGFGVVWWSIATALTPV--AAKLGLPFLLVVRVFMGIGEGVAMP 213
           +   G+ +D    +  + FG+    I +A+  +       L    V+ V  G  +G+  P
Sbjct: 81  KFVMGVLSDRSNPRYFMAFGL----ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWP 136

Query: 214 AMNNILSKWVPVAERSRSLALV-----YSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS 268
                ++ W    ER    ++        G     V  LA   F     GW + FY  G 
Sbjct: 137 PCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLA---FFAFHGGWRAAFYFPGI 193

Query: 269 LGTVWFTVWLSKAHSSPAEDPQLRPAEK---KLIVSSCASKE----PVKTIPWGLILSKP 321
           +  +   + L        +   L P E+     +      KE        I    +L   
Sbjct: 194 IAII-VALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNK 252

Query: 322 PVWALIVSHFCHNWGTFILLTWMPTYYNQI 351
            +W L +++       + +  W P Y +++
Sbjct: 253 LIWLLALANVFVYVVRYGINDWGPLYLSEV 282

Length = 448

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 142 GLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR 201
           GL+ + +  G L+     G+  D  G K VL  G+  + ++TA+  +++ + +  L++ R
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITV--LIIAR 58

Query: 202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS 261
              G G   A+ A   +++   P  ER  +L L+ +G+ LG + G      L    GW +
Sbjct: 59  FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118

Query: 262 VFYSFGSLGTVWF 274
            F     L    F
Sbjct: 119 PFLFLAILALAAF 131

Length = 141

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 3/157 (1%)

Query: 91  SLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFW 150
            LVP W+   +    V+    A LL       +   +         +    GL+      
Sbjct: 191 PLVPAWKLLLRDP--VLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGL 248

Query: 151 GYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT-ALTPVAAKLGLPFLLVVRVFMGIGEG 209
              + ++  G  +D +G +  L   ++   +A   L  ++      +LLV  + +G G G
Sbjct: 249 LGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAG 308

Query: 210 VAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTG 246
           +  PA+N ++S   P  ER  +  L  +   LG   G
Sbjct: 309 LVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345

Length = 346

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 69/386 (17%), Positives = 116/386 (30%), Gaps = 64/386 (16%)

Query: 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGI 161
           RW+ V++        +      ++   P+   F      V +  +    G  ++   GG+
Sbjct: 1   RWWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGL 60

Query: 162 WADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSK 221
            AD  G +AV   G + + +      +A    L  L +       G G+A     N   K
Sbjct: 61  LADKFGPRAVAMLGGILYGLGFTFYAIAD--SLAALYLTYGLASAGVGIAYGIALNTAVK 118

Query: 222 WVPVAERSRSLALVYSGMYLGSVTGLAFSPF---LIHRFGWPSVFYSFGSLGTVWFTVWL 278
           W P  +R  +  ++  G  LGS      SP    +I+  G P+ F   G +  +   V  
Sbjct: 119 WFP-DKRGLASGIIIGGYGLGS---FILSPLITSVINLEGVPAAFIYMGIIFLL-VIVLG 173

Query: 279 SKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHN---- 334
           +     P    QL     ++ V      E ++T  +         W L +S F +     
Sbjct: 174 AFLIGYP--PGQLIKTNIEVSVKDYTVWEMLRTPQF---------WVLYLSFFLNAVSGL 222

Query: 335 -------------------------------------WGTFILLTWMPTYYNQIMQSIGF 357
                                                 G  +           I+  I  
Sbjct: 223 LLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLG-ALSDKIGRQKTMSIVFGISA 281

Query: 358 LGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAG 417
           +G A  L      D   +A + +         S            P  S    G   TA 
Sbjct: 282 VGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLF-PSLVSDIFGPANSAANYGFLYTAK 340

Query: 418 VLAGVFGTAATGYILQHGSWDDVFKV 443
            +AG+FG     + L    ++  F V
Sbjct: 341 AVAGIFGGLIASHALTEIGFEYTFIV 366

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 77/404 (19%), Positives = 130/404 (32%), Gaps = 64/404 (15%)

Query: 96  WEEFPKR--WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYL 153
           WE   KR     + L   AF +  M     S   + + ++F  +    GL+ +       
Sbjct: 4   WEARGKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGA 63

Query: 154 LTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL-GLPFLLVVRVFMGIGEGVAM 212
           L ++  G   D  GG+      ++   I       A        LLV+ + +G+      
Sbjct: 64  LLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFA 123

Query: 213 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV 272
             M N  S + P  ++  +L +  +G    +V  L  +P +   FG+ +     G    V
Sbjct: 124 VGMPNA-SFFFPKEKQGLALGIAGAGNLGVAVAQL-VAPLVAVAFGFLAWRNVAGIYV-V 180

Query: 273 WFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFC 332
              +    A     + P+ R            S +P        + S    W L + +F 
Sbjct: 181 ALAIAAVLAWLGMNDVPEHRA-----------SVKPQLPAQLKAVFSNKDTWLLSLLYFA 229

Query: 333 HNWGTFILLT-WMPTYYN-------QIMQSIGFLGP------------------------ 360
             +G F+  + ++P Y              I FL P                        
Sbjct: 230 -TFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTL 288

Query: 361 ----------AFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQ---DIAPRYSG 407
                     A     L+        V+ +A       F+  G  S  +    I P+ +G
Sbjct: 289 AVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETG 348

Query: 408 VLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLV 450
            + G+    G L G F   A G  L   GS+   F + +  YLV
Sbjct: 349 AVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLV 392

Length = 417

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 18/195 (9%)

Query: 160 GIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIG-EGVAMPAMNNI 218
           G+ AD  G K ++ + +V +S+ T L+ +A+  G+  L + R  +G+G  G    A    
Sbjct: 74  GLLADKFGRKPLMMWSIVAYSVGTGLSGLAS--GVIMLTLSRFIVGMGMAGEYACASTYA 131

Query: 219 LSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278
           +  W P   +S++ A + SG  +G++    F P     +GW + F  F  L  V   +++
Sbjct: 132 VESW-PKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAF--FVGLLPVLLVIYI 188

Query: 279 SKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP------VWALIVSHFC 332
                   E  +   A+         S   V ++    + ++        V+ ++ S F 
Sbjct: 189 RA---RAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFG 245

Query: 333 HNWGTFILLTWMPTY 347
            NW  F LL   PTY
Sbjct: 246 ANWPIFGLL---PTY 257

Length = 426

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 40.1 bits (92), Expect = 0.002
 Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 4/181 (2%)

Query: 104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWA 163
            + +   +  L  ++  ++ ++ +L  +   +      GL+ S+FF GY +  +  G   
Sbjct: 4   LLALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLG 63

Query: 164 DTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWV 223
           D  G + VL  G++ + + T L  +A  +GL  LL++R+  G+G G  +P  + +LS+W 
Sbjct: 64  DRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWF 123

Query: 224 PVAERSRSLALVYS--GMYLGSVTGLAFSPFLIHRF--GWPSVFYSFGSLGTVWFTVWLS 279
           P A        + +     LG   G   +  L+     GW + F     LG +   + L 
Sbjct: 124 PEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLL 183

Query: 280 K 280
            
Sbjct: 184 L 184

Length = 338

>gnl|CDD|235348 PRK05122, PRK05122, major facilitator superfamily transporter; Provisional

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 13/115 (11%)

Query: 105 IVVLCFSAFLLCNMDRVNMSIAILP--MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIW 162
           IV+  F ++L      + + +A+LP  +  +  ++    GL+ S  +   LL++   G +
Sbjct: 20  IVMFTFISYL-----TIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRY 74

Query: 163 ADTVGGKAVLGFGVVWWSIATALTPVAA------KLGLPFLLVVRVFMGIGEGVA 211
           ADT+G K  + FG+   +++  L  +A        L L  LL+ R+ +GIGE +A
Sbjct: 75  ADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLA 129

Length = 399

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	466
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK03699	394	putative transporter; Provisional	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.98
PRK05122	399	major facilitator superfamily transporter; Provisi	99.98
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.98
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.98
PRK12382	392	putative transporter; Provisional	99.97
PRK12307	426	putative sialic acid transporter; Provisional	99.97
TIGR00891	405	2A0112 putative sialic acid transporter.	99.97
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.97
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.97
PRK09874	408	drug efflux system protein MdtG; Provisional	99.97
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.97
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.97
PRK10642	490	proline/glycine betaine transporter; Provisional	99.97
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.97
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.97
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.97
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.97
PRK09952	438	shikimate transporter; Provisional	99.97
PRK10504	471	putative transporter; Provisional	99.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.97
PRK10054	395	putative transporter; Provisional	99.97
PRK10489	417	enterobactin exporter EntS; Provisional	99.97
TIGR00900	365	2A0121 H+ Antiporter protein.	99.97
PRK03633	381	putative MFS family transporter protein; Provision	99.97
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.97
PRK11043	401	putative transporter; Provisional	99.97
PRK10133	438	L-fucose transporter; Provisional	99.97
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.97
PRK03893	496	putative sialic acid transporter; Provisional	99.96
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.96
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.96
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.96
TIGR00895	398	2A0115 benzoate transport.	99.96
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.96
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.96
PRK15075	434	citrate-proton symporter; Provisional	99.96
TIGR00898	505	2A0119 cation transport protein.	99.96
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.96
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.96
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.96
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.96
PRK15011	393	sugar efflux transporter B; Provisional	99.96
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.96
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.96
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.95
PRK11010	491	ampG muropeptide transporter; Validated	99.95
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.95
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.95
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.95
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.95
PRK09528	420	lacY galactoside permease; Reviewed	99.94
KOG2533	495	consensus Permease of the major facilitator superf	99.94
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.94
PRK11902	402	ampG muropeptide transporter; Reviewed	99.94
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.94
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.94
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.94
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.94
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.93
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.93
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.92
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.92
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.92
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.92
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.92
KOG2615	451	consensus Permease of the major facilitator superf	99.92
TIGR00805	633	oat sodium-independent organic anion transporter.	99.91
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.91
TIGR00901	356	2A0125 AmpG-related permease.	99.91
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.9
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.9
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.9
KOG0569	485	consensus Permease of the major facilitator superf	99.89
PTZ00207	591	hypothetical protein; Provisional	99.89
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.89
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.88
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.88
KOG0254	513	consensus Predicted transporter (major facilitator	99.88
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.88
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.87
PRK09669	444	putative symporter YagG; Provisional	99.84
KOG2563	480	consensus Permease of the major facilitator superf	99.83
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.81
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.8
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.78
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.77
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.77
PF13347	428	MFS_2: MFS/sugar transport protein	99.77
PRK09848	448	glucuronide transporter; Provisional	99.76
PRK10429	473	melibiose:sodium symporter; Provisional	99.75
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.75
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.73
PRK11462	460	putative transporter; Provisional	99.69
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.68
COG2211	467	MelB Na+/melibiose symporter and related transport	99.65
KOG3626	735	consensus Organic anion transporter [Secondary met	99.64
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.64
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.63
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.62
PRK05122	399	major facilitator superfamily transporter; Provisi	99.62
PRK15011	393	sugar efflux transporter B; Provisional	99.61
PRK10642	490	proline/glycine betaine transporter; Provisional	99.61
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.6
PRK09528	420	lacY galactoside permease; Reviewed	99.59
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.59
PRK12382	392	putative transporter; Provisional	99.57
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.57
PRK09874	408	drug efflux system protein MdtG; Provisional	99.57
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.57
PRK03545	390	putative arabinose transporter; Provisional	99.56
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.56
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.56
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.56
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.55
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.55
PRK10489	417	enterobactin exporter EntS; Provisional	99.54
TIGR00893	399	2A0114 d-galactonate transporter.	99.53
PRK03893	496	putative sialic acid transporter; Provisional	99.53
PRK11663	434	regulatory protein UhpC; Provisional	99.53
PRK09705	393	cynX putative cyanate transporter; Provisional	99.53
PRK03699	394	putative transporter; Provisional	99.53
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.53
PRK03633	381	putative MFS family transporter protein; Provision	99.52
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.52
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.51
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.51
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.5
TIGR00891	405	2A0112 putative sialic acid transporter.	99.5
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.5
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.49
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.46
PRK12307	426	putative sialic acid transporter; Provisional	99.46
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.46
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.45
PRK09952	438	shikimate transporter; Provisional	99.45
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.43
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.43
PRK15075	434	citrate-proton symporter; Provisional	99.41
PRK11010	491	ampG muropeptide transporter; Validated	99.41
KOG0569	485	consensus Permease of the major facilitator superf	99.4
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.4
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.38
PRK10504	471	putative transporter; Provisional	99.38
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.38
TIGR00895	398	2A0115 benzoate transport.	99.38
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.37
TIGR00900	365	2A0121 H+ Antiporter protein.	99.37
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.36
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.36
PRK10054	395	putative transporter; Provisional	99.36
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.35
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.33
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.33
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.33
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.32
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.32
TIGR00898	505	2A0119 cation transport protein.	99.32
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.32
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.31
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.31
PRK10091	382	MFS transport protein AraJ; Provisional	99.31
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.29
PRK11902	402	ampG muropeptide transporter; Reviewed	99.29
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.28
PLN00028	476	nitrate transmembrane transporter; Provisional	99.28
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.28
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.26
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.26
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.26
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.25
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.23
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.23
PRK09848	448	glucuronide transporter; Provisional	99.21
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.19
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.19
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.17
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.17
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.16
PRK10133	438	L-fucose transporter; Provisional	99.16
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.16
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.14
PRK10429	473	melibiose:sodium symporter; Provisional	99.14
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.13
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.12
PRK11043	401	putative transporter; Provisional	99.12
PF13347	428	MFS_2: MFS/sugar transport protein	99.09
TIGR00901	356	2A0125 AmpG-related permease.	99.08
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.07
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.03
PRK09669	444	putative symporter YagG; Provisional	99.03
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.02
KOG3762	618	consensus Predicted transporter [General function	99.02
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.0
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.0
COG2211	467	MelB Na+/melibiose symporter and related transport	98.97
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.96
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.95
KOG2532	466	consensus Permease of the major facilitator superf	98.93
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.91
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.9
PRK11462	460	putative transporter; Provisional	98.89
COG0477	338	ProP Permeases of the major facilitator superfamil	98.89
KOG0637	498	consensus Sucrose transporter and related proteins	98.88
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.87
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.84
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.82
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.8
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.77
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.75
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.74
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.7
KOG3762	618	consensus Predicted transporter [General function	98.69
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.66
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.64
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.64
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.63
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.62
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.59
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.57
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.56
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.47
PF12832	77	MFS_1_like: MFS_1 like family	98.44
KOG0254	513	consensus Predicted transporter (major facilitator	98.43
KOG3810	433	consensus Micronutrient transporters (folate trans	98.42
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.42
KOG2615	451	consensus Permease of the major facilitator superf	98.41
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.39
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.38
KOG2533	495	consensus Permease of the major facilitator superf	98.37
PTZ00207	591	hypothetical protein; Provisional	98.23
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.21
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.19
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.13
COG3202	509	ATP/ADP translocase [Energy production and convers	98.09
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.08
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.95
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.77
KOG3880	409	consensus Predicted small molecule transporter inv	97.67
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.62
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.62
PRK03612	521	spermidine synthase; Provisional	97.6
KOG2563	480	consensus Permease of the major facilitator superf	97.57
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.36
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.31
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.27
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.04
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.01
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.95
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.85
TIGR00805	633	oat sodium-independent organic anion transporter.	96.8
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.8
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.66
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.55
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.4
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.1
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	94.91
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	94.84
KOG3626	735	consensus Organic anion transporter [Secondary met	94.71
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	94.64
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	94.49
KOG3097	390	consensus Predicted membrane protein [Function unk	93.89
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	92.97
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	92.65
KOG3810	433	consensus Micronutrient transporters (folate trans	91.22
COG4262	508	Predicted spermidine synthase with an N-terminal m	90.88
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	90.58
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	89.6
PRK03612	521	spermidine synthase; Provisional	89.51
KOG3880	409	consensus Predicted small molecule transporter inv	88.57
KOG0637	498	consensus Sucrose transporter and related proteins	88.44
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	85.36
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	83.54
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	80.07

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.7e-35  Score=268.92  Aligned_cols=346  Identities=20%  Similarity=0.255  Sum_probs=286.3

Q ss_pred             CchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHH
Q 012315          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (466)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (466)
                      +..|..++.+.++.|..+....+....+|++.+|+|+|..+.|++.++|.++..+++++...+.||+.||++++..+.++
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF   88 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF   88 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            34566777888888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCc
Q 012315          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (466)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw  259 (466)
                      .++.+++++++  ||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.+++.++.+.+||
T Consensus        89 i~~n~l~alAp--~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW  166 (394)
T COG2814          89 IVSNLLSALAP--SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGW  166 (394)
T ss_pred             HHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhH
Confidence            99999999999  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHH
Q 012315          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI  339 (466)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (466)
                      |.+|++.+.++++..+..+...|  |++.++..+.+               ..+..+++|+|+++...+..++...+++.
T Consensus       167 R~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~---------------~~~~~~~l~~p~v~~~l~~t~l~~~g~F~  229 (394)
T COG2814         167 RATFLAIAVLALLALLLLWKLLP--PSEISGSLPGP---------------LRTLLRLLRRPGVLLGLLATFLFMTGHFA  229 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCcc---------------hhHHHHHhcCchHHHHHHHHHHHHcchhh
Confidence            99999999999999888888888  11111111110               01123578999999999999999999999


Q ss_pred             HHHHHHHHHHH------------------------------------HHHHHHhHHHHHHHH-HHhcCCchHHHHHHHHH
Q 012315          340 LLTWMPTYYNQ------------------------------------IMQSIGFLGPAFFLT-QLSHVDSPAMAVLCMAC  382 (466)
Q Consensus       340 ~~~~~~~~l~~------------------------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  382 (466)
                      .++|+..++++                                    ..........+..+. +.....+.+......++
T Consensus       230 ~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~  309 (394)
T COG2814         230 LYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLLLALALLALTFTGASPALALALLFL  309 (394)
T ss_pred             hHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            99999999998                                    111122122222222 22233344455555555


Q ss_pred             HhhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHhcCCC
Q 012315          383 SQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGE  462 (466)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (466)
                      .++..............+..|+.++.+.+++....++|..+|..++|.+.|+.|+....++.+.+.+++.++.+...+++
T Consensus       310 wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~  389 (394)
T COG2814         310 WGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKD  389 (394)
T ss_pred             HHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44444444455555555666799999999999999999999999999999999999999999999998888777765544


Q ss_pred             cc
Q 012315          463 KV  464 (466)
Q Consensus       463 ~~  464 (466)
                      |+
T Consensus       390 ~~  391 (394)
T COG2814         390 RR  391 (394)
T ss_pred             cc
Confidence            43

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.6e-36  Score=275.73  Aligned_cols=359  Identities=17%  Similarity=0.201  Sum_probs=295.4

Q ss_pred             CCchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHH
Q 012315           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (466)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  178 (466)
                      ++.++.++...++++...++.+..++...|.+.++.++|.+|+|++.+++.+.+.++-.+.|.++||.+.|+.+.+++++
T Consensus        24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil  103 (448)
T COG2271          24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL  103 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence            34577788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhH--HHhhcc
Q 012315          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS--PFLIHR  256 (466)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~--~~l~~~  256 (466)
                      .++..+++++++  +.+.+.++.++.|+.+|..+|.+...+.+|+++++||+..++++.+.++|+.+.|++.  +++..+
T Consensus       104 sai~nil~Gfs~--s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~  181 (448)
T COG2271         104 SAIVNILFGFSP--SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH  181 (448)
T ss_pred             HHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence            999999999999  9999999999999999999999999999999999999999999999999999999999  899988


Q ss_pred             cCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcc-cCCCCC-----CCcchhhhhcChhHHHHHHHH
Q 012315          257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSC-ASKEPV-----KTIPWGLILSKPPVWALIVSH  330 (466)
Q Consensus       257 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  330 (466)
                      ++||..|++.++++++..+..++..+++|++..-.+.++......+. +++++.     .+.-++.+++||.+|.+.+..
T Consensus       182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~  261 (448)
T COG2271         182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALAN  261 (448)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHH
Confidence            99999999999999999998888888888765433222211111111 111111     223456789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----------------------------------------HHHHHHhHHHHHHHHHHhcC
Q 012315          331 FCHNWGTFILLTWMPTYYNQ----------------------------------------IMQSIGFLGPAFFLTQLSHV  370 (466)
Q Consensus       331 ~~~~~~~~~~~~~~~~~l~~----------------------------------------~~~~~~~~~~~~~~~~~~~~  370 (466)
                      ++....-+++..|.|.|+.+                                        ....+.++...+.+......
T Consensus       262 vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~  341 (448)
T COG2271         262 VFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA  341 (448)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999                                        23333333333333333333


Q ss_pred             C--chHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHH-HHHHHHHHHHHHhccCcchhHHHHHHH
Q 012315          371 D--SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVL-AGVFGTAATGYILQHGSWDDVFKVSVG  446 (466)
Q Consensus       371 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~-g~~i~~~~~g~l~~~~g~~~~~~~~~~  446 (466)
                      +  +.++..+++...++.........-....|..| +..|++.|+...++++ |.+.+....|++.|..||...|++..+
T Consensus       342 ~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~  421 (448)
T COG2271         342 PNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSI  421 (448)
T ss_pred             CCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHH
Confidence            3  34555555555555544444444455677788 4899999999999999 999999999999999999999999888


Q ss_pred             HHHHHHHHHHHhc
Q 012315          447 LYLVGTAVWNLFS  459 (466)
Q Consensus       447 ~~~~~~~~~~~~~  459 (466)
                      ..+++.+++..+.
T Consensus       422 ~a~l~~lll~~~~  434 (448)
T COG2271         422 AALLAILLLLPVW  434 (448)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888777766653

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=3e-33  Score=270.68  Aligned_cols=338  Identities=16%  Similarity=0.169  Sum_probs=259.5

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHH
Q 012315          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI  181 (466)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  181 (466)
                      +|..+..+.++.+..........+.+|.+.+++|.|+.++|++.+.+.+++.+++++.|++.||+|||+++..+.++.++
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   86 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA   86 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            45545555555455444555566678999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchH
Q 012315          182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS  261 (466)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~  261 (466)
                      +.+++.+++  +++.++++|+++|++.+...+...+++.+++|+++|++++|++..+.++|..++|++++.+.+.+|||+
T Consensus        87 ~~~~~~~~~--~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~  164 (390)
T PRK03545         87 SHVLSALAW--NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRT  164 (390)
T ss_pred             HHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHH
Confidence            999999999  999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHH
Q 012315          262 VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL  341 (466)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (466)
                      .|++.+++.++..+......|+.+++++   + +               ..+.++++|+|.++...+..++.........
T Consensus       165 ~f~~~~~~~~l~~~~~~~~~~~~~~~~~---~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (390)
T PRK03545        165 TFLAIGGGALITLLLLIKLLPLLPSEHS---G-S---------------LKSLPLLFRRPALVSLYLLTVVVVTAHFTAY  225 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCCc---c-h---------------HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999988877766555554454332111   0 0               1134567889988877666666666666667


Q ss_pred             HHHHHHHHH------------------------------------HHHHHHhHHHHHHH-HHHhcCCchHHHHHHHHHHh
Q 012315          342 TWMPTYYNQ------------------------------------IMQSIGFLGPAFFL-TQLSHVDSPAMAVLCMACSQ  384 (466)
Q Consensus       342 ~~~~~~l~~------------------------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  384 (466)
                      ++++.|+++                                    .....+........ ......++.+..+.+.++.+
T Consensus       226 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g  305 (390)
T PRK03545        226 SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWG  305 (390)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            777777766                                    11111111111111 11222334444444444444


Q ss_pred             hhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHhcC
Q 012315          385 GTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFST  460 (466)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  460 (466)
                      .......+.......+..|+.+++++|+++...++|..+||.+.|.+.|+.|++..|.+.+++.+++.+......+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        306 IAIMCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHhcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            4444444445556666778899999999999999999999999999999999999999999988888777666543

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=9.4e-34  Score=277.58  Aligned_cols=361  Identities=16%  Similarity=0.174  Sum_probs=260.9

Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHH
Q 012315          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (466)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (466)
                      .++..+...++.++..+++...++..+|.+.+++|+|..+.|++.+.+.++..+++++.|++.||+|||+++.++.++.+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~   99 (434)
T PRK11663         20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG   99 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence            34556667777788888888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCch
Q 012315          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP  260 (466)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~  260 (466)
                      ++.+++++++  +++.+++.|++.|++.|..++...+++.+++|+++|++++++++.+.++|..++|.+.+++.+.+|||
T Consensus       100 ~~~~~~~~~~--~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~  177 (434)
T PRK11663        100 IINILFGFSS--SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR  177 (434)
T ss_pred             HHHHHHHHHh--HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence            9999999998  99999999999999999989999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcch-----hhhhcChhHHHHHHHHHHHHH
Q 012315          261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPW-----GLILSKPPVWALIVSHFCHNW  335 (466)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  335 (466)
                      +.|++.+++.++..+...+..+++|+........+.+...++..++++..+.++     ...++++.+|.+.+..++...
T Consensus       178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (434)
T PRK11663        178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYV  257 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence            999998887766555544455554432211000000000000000000011112     235678889988888887777


Q ss_pred             HHHHHHHHHHHHHHH--------------------------------HH-----------HHHHhHHHHHHHHHHhcCCc
Q 012315          336 GTFILLTWMPTYYNQ--------------------------------IM-----------QSIGFLGPAFFLTQLSHVDS  372 (466)
Q Consensus       336 ~~~~~~~~~~~~l~~--------------------------------~~-----------~~~~~~~~~~~~~~~~~~~~  372 (466)
                      .+..+.+|+|.|+.+                                ..           ...+.......+... ...+
T Consensus       258 ~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~  336 (434)
T PRK11663        258 VRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM-PFAS  336 (434)
T ss_pred             HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc-cccc
Confidence            888888999999965                                11           000111111111111 1122


Q ss_pred             hHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Q 012315          373 PAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVG  451 (466)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~  451 (466)
                      ........+..+++.............+..| +++|++.|+.+...++|++++|.+.|++.|+.||...|.+.+++.+++
T Consensus       337 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~  416 (434)
T PRK11663        337 YVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGIS  416 (434)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHH
Confidence            2222111111111111111122334456565 699999999999999999999999999999999999999998888887


Q ss_pred             HHHHHHhcCCCcc
Q 012315          452 TAVWNLFSTGEKV  464 (466)
Q Consensus       452 ~~~~~~~~~~~~~  464 (466)
                      .+......++++.
T Consensus       417 ~~~~~~~~~~~~~  429 (434)
T PRK11663        417 ALLLLPFLNAQAP  429 (434)
T ss_pred             HHHHHHHHhhhch
Confidence            7766655444443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=3.8e-33  Score=265.59  Aligned_cols=324  Identities=13%  Similarity=0.075  Sum_probs=247.4

Q ss_pred             hhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchh
Q 012315          116 CNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLP  195 (466)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (466)
                      +......+++.+|.+.+|+|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+.....+  +++
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~   80 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPF--NYE   80 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhc--cHH
Confidence            455667888999999999999999999999999999999999999999999999877665555544433333335  899


Q ss_pred             HHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHH
Q 012315          196 FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFT  275 (466)
Q Consensus       196 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~  275 (466)
                      .+++.|++.|++.+. .......++|++|+++|++++++.+.+..+|.++++++++++.+.+|||+.|++.+++.++..+
T Consensus        81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~  159 (368)
T TIGR00903        81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGII  159 (368)
T ss_pred             HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence            999999999999986 5566667799999999999999999999999999999999999999999999998888888777


Q ss_pred             HHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 012315          276 VWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ-----  350 (466)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----  350 (466)
                      +.++..||+|+.+++..+.+ +            ...++++++++|.+|.+.+..++....++++.+|+|.|+++     
T Consensus       160 ~~~~~lp~~p~~~~~~~~~~-~------------~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~  226 (368)
T TIGR00903       160 LVLAALPALPFQAAEGFGFK-D------------AVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLED  226 (368)
T ss_pred             HHHHHcCCCCCCCCCCcchH-H------------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCh
Confidence            77777777664332111000 0            01146789999999999999999999999999999999986     


Q ss_pred             -------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 012315          351 -------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQ  399 (466)
Q Consensus       351 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (466)
                                                     .......+..++.+.......+....+.+..+.+++.....+..+.+..
T Consensus       227 ~~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  306 (368)
T TIGR00903       227 IAGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIG  306 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence                                           0011111112222222222222333333334344444445556777788


Q ss_pred             ccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHH
Q 012315          400 DIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNL  457 (466)
Q Consensus       400 ~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  457 (466)
                      |..| +.||++.|+.+..+++|+.++|.+.+.+..  |....|.+.++..+++.+...+
T Consensus       307 ~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~~  363 (368)
T TIGR00903       307 KFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIALL  363 (368)
T ss_pred             HhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHh
Confidence            8888 599999999999999999999999998884  7778888888888877776653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=8.3e-33  Score=268.72  Aligned_cols=346  Identities=19%  Similarity=0.280  Sum_probs=256.8

Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHH
Q 012315          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (466)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (466)
                      .+|..+..+++.+++++++...++...|.+.+++|++..++|++.+++.+++.+++++.|++.||+|||+++..+.++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~   84 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWG   84 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHH
Confidence            46788888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc-----
Q 012315          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-----  255 (466)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~-----  255 (466)
                      ++.+++++++  +++.+++.|++.|++.+...+....++.|++|+++|++++++++.+..+|.++++++++++.+     
T Consensus        85 ~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  162 (412)
T TIGR02332        85 IASTATMFAT--GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM  162 (412)
T ss_pred             HHHHHHHHhc--CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999998  999999999999999999999999999999999999999999999999999999999998864     


Q ss_pred             -ccCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhc---cc----CCC-C--CC----CcchhhhhcC
Q 012315          256 -RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSS---CA----SKE-P--VK----TIPWGLILSK  320 (466)
Q Consensus       256 -~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~-~--~~----~~~~~~~~~~  320 (466)
                       ..|||+.|++.++..++..++.+++.||+|++.+...+++++...+.   ..    +.+ .  ..    ...++.++ +
T Consensus       163 ~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  241 (412)
T TIGR02332       163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-T  241 (412)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-C
Confidence             46999999998888877766666667777654332222222211110   00    000 0  00    11234443 5


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------HHHHHHhHHHH
Q 012315          321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQ---------------------------------------IMQSIGFLGPA  361 (466)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------------------------------~~~~~~~~~~~  361 (466)
                      +.+|...+.+++....++.+.+|+|.|+++                                       .......+...
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~  321 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAA  321 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHH
Confidence            788888888888888888999999999986                                       00111111111


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccC-cchh
Q 012315          362 FFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHG-SWDD  439 (466)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~-g~~~  439 (466)
                      +.+.......+....+..+.+...+.....+..+....+..| +++++++|+.+..+++|++++|.+.|.+.|.. +|+.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~  401 (412)
T TIGR02332       322 AGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNS  401 (412)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCch
Confidence            111111111122211111111111111112223333344454 79999999999999999999999999999985 6998


Q ss_pred             HHHHHHHHHH
Q 012315          440 VFKVSVGLYL  449 (466)
Q Consensus       440 ~~~~~~~~~~  449 (466)
                      .+.+.+++.+
T Consensus       402 ~~~~~~~~~~  411 (412)
T TIGR02332       402 GLWFVAALLV  411 (412)
T ss_pred             hHHHHHHHHh
Confidence            8887766543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=1.8e-33  Score=278.32  Aligned_cols=355  Identities=17%  Similarity=0.174  Sum_probs=259.4

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHH
Q 012315          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI  181 (466)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  181 (466)
                      .+..+..+++.++..+.++..+++..|.+.+++|++..+.|++.+++.+++.+++++.|+++||+|+|+++..+.++.++
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~  106 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI  106 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence            56667788888888999999999999999999999999999999999999999999999999999999999998888887


Q ss_pred             HHHHHHH-----HhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc
Q 012315          182 ATALTPV-----AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (466)
Q Consensus       182 ~~~~~~~-----~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~  256 (466)
                      +.++.++     ++  +++.+++.|++.|++.+...+...+++++|+|+++||+++|+++.+.++|.++++.+..++.+.
T Consensus       107 ~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~  184 (467)
T PRK09556        107 CMLGFGASLGSGSV--SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY  184 (467)
T ss_pred             HHHHHHHHHhcccc--hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence            7766655     45  8999999999999999999999999999999999999999999999999999999998877665


Q ss_pred             c---CchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHh-hcccCCCCCCCcc-----hhhhhcChhHHHHH
Q 012315          257 F---GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIV-SSCASKEPVKTIP-----WGLILSKPPVWALI  327 (466)
Q Consensus       257 ~---gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  327 (466)
                      .   +|+..|.+.+++.++..++.+++.++.|++.+..++++..... ...++.++.++.+     .+..+++|.+|...
T Consensus       185 ~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  264 (467)
T PRK09556        185 FFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLC  264 (467)
T ss_pred             hccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHH
Confidence            3   5999998888887777666666656555432221111100000 0000000001111     22378999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---------------------------------------HHHHHHhHHHHHHHHHHh
Q 012315          328 VSHFCHNWGTFILLTWMPTYYNQ---------------------------------------IMQSIGFLGPAFFLTQLS  368 (466)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~l~~---------------------------------------~~~~~~~~~~~~~~~~~~  368 (466)
                      +..++....+.+...|+|.|+++                                       .............+....
T Consensus       265 ~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~  344 (467)
T PRK09556        265 FANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ  344 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH
Confidence            99888888888899999999976                                       111111111111111222


Q ss_pred             cCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHH-HHHHHHHHHHHHhc------------c
Q 012315          369 HVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVL-AGVFGTAATGYILQ------------H  434 (466)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~-g~~i~~~~~g~l~~------------~  434 (466)
                      ..++.+...+..++.+...............+..| +.+|++.|+.+..+++ |++++|.+.|++.|            .
T Consensus       345 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~  424 (467)
T PRK09556        345 HATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTL  424 (467)
T ss_pred             hcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccc
Confidence            22333333233333332221222222234446666 6999999999999997 77999999999999            5


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHh
Q 012315          435 GSWDDVFKVSVGLYLVGTAVWNLF  458 (466)
Q Consensus       435 ~g~~~~~~~~~~~~~~~~~~~~~~  458 (466)
                      .||+..|.+..++.+++.++.+.+
T Consensus       425 ~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        425 TGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHH
Confidence            679999999888888887766655

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=1.9e-32  Score=271.23  Aligned_cols=363  Identities=29%  Similarity=0.536  Sum_probs=279.2

Q ss_pred             CCCchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhh----------------------ccCCChhhHHHHHHHHHHHHHHH
Q 012315           98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSA----------------------EFNWNPATVGLIQSSFFWGYLLT  155 (466)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~g~~~~~~~~~~~~~  155 (466)
                      ..+.+|.+..+++++..+++.++..++...+.+.+                      +++++..+.|++.+.+.+++.++
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~   92 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII   92 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence            45567888888899999999999999988888776                      78999999999999999999999


Q ss_pred             HhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHH
Q 012315          156 QIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALV  235 (466)
Q Consensus       156 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  235 (466)
                      +++.|+++||+|+|+++..+.++.+++.+++.++...+++.+++.|+++|++.+...+....++.+++|+++|++++++.
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  172 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS  172 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence            99999999999999999999999999888876553226788999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhhhHHHhhccc-CchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCC--CCCCCc
Q 012315          236 YSGMYLGSVTGLAFSPFLIHRF-GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK--EPVKTI  312 (466)
Q Consensus       236 ~~~~~~g~~ig~~~~~~l~~~~-gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  312 (466)
                      ..+..+|.++++++++++.+.+ |||+.|++.+++.++..++++...+++|+.++..++++++...+..+++  +...+.
T Consensus       173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  252 (465)
T TIGR00894       173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSL  252 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCC
Confidence            9999999999999999999884 9999999999888877776666666666544433333333222221111  112234


Q ss_pred             chhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------H---------
Q 012315          313 PWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ--------------------------------I---------  351 (466)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------------------------~---------  351 (466)
                      +++++++++.+|...+..++.....+.+.+|+|.|+++                                .         
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~  332 (465)
T TIGR00894       253 PIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSL  332 (465)
T ss_pred             CHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence            68899999999999999999999999999999999987                                0         


Q ss_pred             ------HHHHHhHHHHHHHHHHhc-CCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHH
Q 012315          352 ------MQSIGFLGPAFFLTQLSH-VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFG  424 (466)
Q Consensus       352 ------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~  424 (466)
                            ....+..+.......... ..+....+.++.+.+++.+...+.......+..|+..|.+.|+.+..+.+|+.++
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~  412 (465)
T TIGR00894       333 TAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIA  412 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHH
Confidence                  000000001111111111 2233333333444444434344445555667778899999999999999999999


Q ss_pred             HHHHHHHhcc---CcchhHHHHHHHHHHHHHHHHHHhcC
Q 012315          425 TAATGYILQH---GSWDDVFKVSVGLYLVGTAVWNLFST  460 (466)
Q Consensus       425 ~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~  460 (466)
                      |.+.|.+.+.   .+|...|.+.+++.+++.++..++.+
T Consensus       413 p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~  451 (465)
T TIGR00894       413 STLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFGS  451 (465)
T ss_pred             HHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence            9999999875   34888888888888888777665533

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.8e-32  Score=262.09  Aligned_cols=329  Identities=39%  Similarity=0.790  Sum_probs=290.1

Q ss_pred             hccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccc
Q 012315          132 AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVA  211 (466)
Q Consensus       132 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~  211 (466)
                      .++++|..+.+++.+.+..|+++++++.|+++||+|.|+++..+.++.+++.++..++...+++.+++.|+++|++.|..
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~  145 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL  145 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence            46889999999999999999999999999999999999999999999999999999988667788899999999999999


Q ss_pred             hhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc-cCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCC
Q 012315          212 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ  290 (466)
Q Consensus       212 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (466)
                      +|+...+.++|.|++||++..++...+..+|.+++-+++|++.+. +||++.|++.++++++..++++.+..|+|.+++.
T Consensus       146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~  225 (466)
T KOG2532|consen  146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPN  225 (466)
T ss_pred             HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence            999999999999999999999999999999999999999999998 9999999999999999999999999999988888


Q ss_pred             CChHHHHHHhhcccCCCCC--CCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q 012315          291 LRPAEKKLIVSSCASKEPV--KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ------------------  350 (466)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------------  350 (466)
                      ..++|.+.+.+...+++.+  .+.+|+++++++.+|.+++..++...+.+.+..++|.|+++                  
T Consensus       226 is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l  305 (466)
T KOG2532|consen  226 ISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFL  305 (466)
T ss_pred             CCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHH
Confidence            8888888777666554444  47899999999999999999999999999999999999998                  


Q ss_pred             ----------------------------HHHHHHhHHHHHHHHHHhcCC--chHHHHHHHHHHhhhhhhhhhhhhhhhcc
Q 012315          351 ----------------------------IMQSIGFLGPAFFLTQLSHVD--SPAMAVLCMACSQGTDAFSQSGLYSNHQD  400 (466)
Q Consensus       351 ----------------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (466)
                                                  +...++..+.++.+..+.+.+  ..+..++++.+.....+...++.+....+
T Consensus       306 ~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~  385 (466)
T KOG2532|consen  306 AMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQD  385 (466)
T ss_pred             HHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhh
Confidence                                        444555566666666666555  33445555556566666777777777777


Q ss_pred             cCccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc---CcchhHHHHHHHHHHHHHHHHHHhcC
Q 012315          401 IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH---GSWDDVFKVSVGLYLVGTAVWNLFST  460 (466)
Q Consensus       401 ~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~  460 (466)
                      ..|++.+..+|+.+....+.++++|.+.|.+...   ..|+..|++.+++.+++.+++.++.+
T Consensus       386 ~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s  448 (466)
T KOG2532|consen  386 IAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFGS  448 (466)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEeec
Confidence            7999999999999999999999999999999942   58999999999999999988887744

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=6e-32  Score=262.25  Aligned_cols=342  Identities=26%  Similarity=0.441  Sum_probs=262.4

Q ss_pred             HHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh
Q 012315          113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL  192 (466)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  192 (466)
                      +++..++...++...|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++++++  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--   80 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG--   80 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc--
Confidence            345667778888899999999999999999999999999999999999999999999999999999999999999998  


Q ss_pred             chhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHH
Q 012315          193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV  272 (466)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~  272 (466)
                      +++.+++.|++.|++.+...+....++.|++|+++|++++++.+...++|..+++.+++++.+..+||+.|++.+++.++
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  160 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII  160 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888777


Q ss_pred             HHHHHhhhcccCCCCCCCCChHHHHHHhhc------ccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          273 WFTVWLSKAHSSPAEDPQLRPAEKKLIVSS------CASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (466)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (466)
                      ..+...+..++++++++...+++++...+.      .+++++.+....++.+++|+++...+..++..........+.|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (399)
T TIGR00893       161 WGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPT  240 (399)
T ss_pred             HHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            766666655655543332222222111111      11112223345678889999999998888888888889999999


Q ss_pred             HHHH------------------------------------H---HHH--HHhHH----HHHHHHHHhcCCchHHHHHHHH
Q 012315          347 YYNQ------------------------------------I---MQS--IGFLG----PAFFLTQLSHVDSPAMAVLCMA  381 (466)
Q Consensus       347 ~l~~------------------------------------~---~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~  381 (466)
                      |+++                                    .   ...  .....    ..+........+..+.......
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (399)
T TIGR00893       241 YLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVA  320 (399)
T ss_pred             HHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            9876                                    0   000  00000    0011111111122233333333


Q ss_pred             HHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHHHHHHHH
Q 012315          382 CSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-WDDVFKVSVGLYLVGTAVWNL  457 (466)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  457 (466)
                      +.++..+ ..+....+..+..| ++|+++.|+.+....+|+.++|.+.|.+.|..| |...|.+.+++.+++.+...+
T Consensus       321 ~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       321 LGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             HHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            3333333 56667777777776 689999999999999999999999999999977 999998888887777666543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=6.9e-31  Score=253.73  Aligned_cols=332  Identities=16%  Similarity=0.174  Sum_probs=249.4

Q ss_pred             CchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHH
Q 012315          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (466)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (466)
                      ++.|+.+..+..+.+..........+.+|.+.+++|+++.+.|+..+++.++..+++++.|++.||+|||+++..+.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~   95 (394)
T PRK10213         16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLL   95 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHH
Confidence            34666655656555555556656667789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCc
Q 012315          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (466)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw  259 (466)
                      +++.+++.+++  +++.+++.|++.|++.+...+...+++.|++|+++|++++++...+.++|..++|++++++.+.+||
T Consensus        96 ~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw  173 (394)
T PRK10213         96 TLSCLLVSFAN--SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGW  173 (394)
T ss_pred             HHHHHHHHHHC--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence            99999999988  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHH
Q 012315          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI  339 (466)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (466)
                      |+.|++.+++.++..+......|+.+++++   +                .....++.+++|.+|...+..++.......
T Consensus       174 ~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~---~----------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  234 (394)
T PRK10213        174 RNVFNAAAVMGVLCIFWIIKSLPSLPGEPS---H----------------QKQNTFRLLQRPGVMAGMIAIFMSFAGQFA  234 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCcccc---c----------------chhHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            999998887766655444433444321110   0                011244678899998877766666666666


Q ss_pred             HHHHH-HHHHHH-----------------------------------H-HHHHHhHHHHHHHHHHhcCCchHHHHHHHHH
Q 012315          340 LLTWM-PTYYNQ-----------------------------------I-MQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC  382 (466)
Q Consensus       340 ~~~~~-~~~l~~-----------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (466)
                      ..+++ |.|.++                                   . ......+.....+......++.+......++
T Consensus       235 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l  314 (394)
T PRK10213        235 FFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAII  314 (394)
T ss_pred             HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            66666 556544                                   1 1111111111111221222334444444555


Q ss_pred             HhhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 012315          383 SQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT  452 (466)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  452 (466)
                      .+.+.....+.......+..|++.++..++.....++|..+|+.+.|++.|..|+...+...+.+.++..
T Consensus       315 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        315 WGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA  384 (394)
T ss_pred             HHHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence            5555555666666566666677777888888888899999999999999999999888887766554443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=4.4e-31  Score=257.26  Aligned_cols=348  Identities=23%  Similarity=0.269  Sum_probs=259.2

Q ss_pred             CCchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHH
Q 012315           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (466)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  178 (466)
                      .+++|..+.+++...++.+++....+...|.+.+++|.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (406)
T PRK11551         10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL   89 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            34788888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC
Q 012315          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (466)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g  258 (466)
                      ..++.+++.+.+  +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+
T Consensus        90 ~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  167 (406)
T PRK11551         90 FGLFSLATAQAW--DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA  167 (406)
T ss_pred             HHHHHHHHHHhc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence            999998888888  999999999999999999999999999999999999999999999999999999999999888899


Q ss_pred             chHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhc---ChhHHHHHHHHHHHHH
Q 012315          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILS---KPPVWALIVSHFCHNW  335 (466)
Q Consensus       259 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  335 (466)
                      |++.|++.+++.++..+....+.||+++..++..+.+.             ++...+..++   ++..+.+.+..++...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (406)
T PRK11551        168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQ-------------RAPVLRALFGEGRATATLLLWISYFFTLI  234 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchh-------------hhhhHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence            99999988877666655555555655432111100000             0001112222   2233444444555555


Q ss_pred             HHHHHHHHHHHHHHH------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHH
Q 012315          336 GTFILLTWMPTYYNQ------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLC  379 (466)
Q Consensus       336 ~~~~~~~~~~~~l~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (466)
                      ..+....|+|.|+++                                    .....+++...+.+......++.+...+.
T Consensus       235 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (406)
T PRK11551        235 VLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLA  314 (406)
T ss_pred             HHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            666677788888876                                    11112222222333333334444444444


Q ss_pred             HHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHHHHH
Q 012315          380 MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNL  457 (466)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~  457 (466)
                      .++.++......+.......+..| ++|+++.|+.+....+|+.++|.+.|.+.++ .++...+.....+.+++.++.+.
T Consensus       315 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        315 GFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            444444444455666666667666 6899999999999999999999999999998 45666666666666666655554


Q ss_pred             hcCC
Q 012315          458 FSTG  461 (466)
Q Consensus       458 ~~~~  461 (466)
                      ..++
T Consensus       395 ~~~~  398 (406)
T PRK11551        395 LVSR  398 (406)
T ss_pred             Hhcc
Confidence            4333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=7.8e-31  Score=258.35  Aligned_cols=357  Identities=15%  Similarity=0.226  Sum_probs=244.3

Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHH
Q 012315          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (466)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (466)
                      ++|..+..+++.....+.+...++...|.+.++ |++..+.|++.+.+.++..+++++.|+++||+|||++++++.++.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~  104 (452)
T PRK11273         26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  104 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence            345555666666666677767778888998888 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh--hhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHH-HHhhhHHHhhccc
Q 012315          181 IATALTPVAA--KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSV-TGLAFSPFLIHRF  257 (466)
Q Consensus       181 ~~~~~~~~~~--~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-ig~~~~~~l~~~~  257 (466)
                      ++.+++++.+  ..+++.+++.|++.|++.+..++.....+.+++|+++|++++|+++.+.++|.. .+|+++..+....
T Consensus       105 i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  184 (452)
T PRK11273        105 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN  184 (452)
T ss_pred             HHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            9998887753  116778888999999999988888888999999999999999999999999874 4555444443445


Q ss_pred             CchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcch-----hhhhcChhHHHHHHHHHH
Q 012315          258 GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPW-----GLILSKPPVWALIVSHFC  332 (466)
Q Consensus       258 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  332 (466)
                      |||+.|++.+++.++..++..++.++++++....++++.+....+..++++.++.+.     +.++|++.+|...+..++
T Consensus       185 gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  264 (452)
T PRK11273        185 DWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVF  264 (452)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHH
Confidence            899999998888777666666666665543211111110000000000001111111     236789999998888888


Q ss_pred             HHHHHHHHHHHHHHHHHH--------------------------------H--------HHHHHhHHHHH--HHHHHhcC
Q 012315          333 HNWGTFILLTWMPTYYNQ--------------------------------I--------MQSIGFLGPAF--FLTQLSHV  370 (466)
Q Consensus       333 ~~~~~~~~~~~~~~~l~~--------------------------------~--------~~~~~~~~~~~--~~~~~~~~  370 (466)
                      .....+....++|.|+++                                .        ..........+  ........
T Consensus       265 ~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~  344 (452)
T PRK11273        265 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPA  344 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcc
Confidence            888888889999999986                                0        00000000001  01111111


Q ss_pred             CchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHH-HHHHHHHHhccCcchhHHHHHHHHH
Q 012315          371 DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVF-GTAATGYILQHGSWDDVFKVSVGLY  448 (466)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i-~~~~~g~l~~~~g~~~~~~~~~~~~  448 (466)
                      .+.+....+....+...............+..| +.+|+++|+.+...++|+.+ +|.+.|.+.|+.||+..|.+++++.
T Consensus       345 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~  424 (452)
T PRK11273        345 GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGS  424 (452)
T ss_pred             cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHH
Confidence            122222221111111111111122233445555 68999999999999998765 7999999999999999999888888


Q ss_pred             HHHHHHHHHh
Q 012315          449 LVGTAVWNLF  458 (466)
Q Consensus       449 ~~~~~~~~~~  458 (466)
                      +++++....+
T Consensus       425 ~~~~~~~~~~  434 (452)
T PRK11273        425 ILAVILLIVV  434 (452)
T ss_pred             HHHHHHHHHH
Confidence            8877766655

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=2.8e-30  Score=261.77  Aligned_cols=356  Identities=14%  Similarity=0.142  Sum_probs=260.1

Q ss_pred             CCchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHH
Q 012315           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (466)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  178 (466)
                      .+..|.+++++.++.+..+++...++..+|.+.+++|++..+.+++.+++.++.+++++++|+++||+|||++++++.++
T Consensus       162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil  241 (742)
T TIGR01299       162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV  241 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            35677788888888888888888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc--
Q 012315          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--  256 (466)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~--  256 (466)
                      .+++.+++++++  +++.++++|++.|++.+...+...+++.|++|+++|++.++++..++.+|.++++.++.++...  
T Consensus       242 ~~i~~ll~afa~--s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G  319 (742)
T TIGR01299       242 NGFFAFFSSFVQ--GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG  319 (742)
T ss_pred             HHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999998  9999999999999999999999999999999999999999999999999999999988776643  


Q ss_pred             -----------cCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCC-CChHHHHH------------------------Hh
Q 012315          257 -----------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ-LRPAEKKL------------------------IV  300 (466)
Q Consensus       257 -----------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------------------------~~  300 (466)
                                 .+||+.+++.++..++. ++..++.||+|+.... .+.++...                        ..
T Consensus       320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~  398 (742)
T TIGR01299       320 WSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIK  398 (742)
T ss_pred             chhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHH
Confidence                       35888888776655544 4445566777642100 00000000                        00


Q ss_pred             hcc-cC---C-CCCCC------------------cchhhhhcCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 012315          301 SSC-AS---K-EPVKT------------------IPWGLILSKP---PVWALIVSHFCHNWGTFILLTWMPTYYNQ----  350 (466)
Q Consensus       301 ~~~-~~---~-~~~~~------------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----  350 (466)
                      ... +.   + ++...                  .+++.+++.+   ..+.+++..++..+.++++..|+|.++.+    
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~  478 (742)
T TIGR01299       399 TIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQAD  478 (742)
T ss_pred             HhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000 00   0 00000                  0234445433   23566667788888899999998854210    


Q ss_pred             --------------------------------------------------------------------------------
Q 012315          351 --------------------------------------------------------------------------------  350 (466)
Q Consensus       351 --------------------------------------------------------------------------------  350 (466)
                                                                                                      
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  558 (742)
T TIGR01299       479 DYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFEN  558 (742)
T ss_pred             HHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccc
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------------------HHHHHHhHHHHHH
Q 012315          351 -------------------------------------------------------------------IMQSIGFLGPAFF  363 (466)
Q Consensus       351 -------------------------------------------------------------------~~~~~~~~~~~~~  363 (466)
                                                                                         .....++++.++.
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~  638 (742)
T TIGR01299       559 TDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCIS  638 (742)
T ss_pred             cchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence                                                                               2222223333333


Q ss_pred             HHHHhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHH
Q 012315          364 LTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFK  442 (466)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~  442 (466)
                      .+.+...++....+++.++.+++.....+..+.+..+.+| +.|++++|+.+..+.+|.+++|++.|.+.+. +....|+
T Consensus       639 ~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~  717 (742)
T TIGR01299       639 CFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPIL  717 (742)
T ss_pred             HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHH
Confidence            3333333333333333444445555566778888889888 6999999999999999999999999998875 4567777


Q ss_pred             HHHHHHHHHHHHHHHh
Q 012315          443 VSVGLYLVGTAVWNLF  458 (466)
Q Consensus       443 ~~~~~~~~~~~~~~~~  458 (466)
                      +++++.++++++..++
T Consensus       718 i~a~~lll~~ll~~~L  733 (742)
T TIGR01299       718 FASAALACGGLLALKL  733 (742)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            7777777766665555

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=9.9e-31  Score=253.27  Aligned_cols=338  Identities=15%  Similarity=0.164  Sum_probs=254.7

Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHH
Q 012315          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (466)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (466)
                      ++++..+.+++.+++.+.....+++.+|.+.+++|+|..+.+++.+.+.++..+++++.|++.||+|||+++..+.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            46677778888888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc-ccCc
Q 012315          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFGW  259 (466)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~-~~gw  259 (466)
                      ++.+++.+++  +++.+++.|++.|++.+...+...+++.+++|+++|+++++..+....+|..++|.+.+++.+ ..||
T Consensus        84 i~~~l~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw  161 (394)
T PRK03699         84 LAVAGLMFSH--SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW  161 (394)
T ss_pred             HHHHHHHHcc--hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            9999999988  899999999999999998888999999999999999999999999999999999999888764 5799


Q ss_pred             hHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHH
Q 012315          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI  339 (466)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (466)
                      |+.|.+.+++.++..++.++.  +.|+.+++.++           ++++.    .+. ..++.++...+..++....++.
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~~--~~p~~~~~~~~-----------~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~  223 (394)
T PRK03699        162 YWVYACIGLVYVAIFILTLFS--EFPALGKHAPK-----------ADKPV----AKE-KWGIGVLFLAIAALLYILAQLT  223 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--CCccccccCcc-----------ccCcc----ccc-cCChHHHHHHHHHHHHHHHHHH
Confidence            999998887776655443332  21211111000           00000    011 1246677777777777778888


Q ss_pred             HHHHHHHHHHH-------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHH
Q 012315          340 LLTWMPTYYNQ-------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC  382 (466)
Q Consensus       340 ~~~~~~~~l~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (466)
                      +..|+|.|+++                                     ........+..+.+......++........+.
T Consensus       224 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (394)
T PRK03699        224 FISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILG  303 (394)
T ss_pred             HHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            89999999976                                     11111222222222222233333333333344


Q ss_pred             HhhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHh
Q 012315          383 SQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  458 (466)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  458 (466)
                      .++..+...+.......+..|+.++...|.......+|..++|.+.|++.|..|++..+++.+++.+++.+.....
T Consensus       304 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (394)
T PRK03699        304 LGFFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILL  379 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHH
Confidence            4444444555555566666676778888999999999999999999999999999999988888777776544444

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=1.5e-30  Score=257.28  Aligned_cols=348  Identities=13%  Similarity=0.094  Sum_probs=246.3

Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHH
Q 012315          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (466)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (466)
                      ++++.+.......+...+....+.+..|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~  112 (476)
T PLN00028         33 PHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTA  112 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            44556666666777777777788889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc-----
Q 012315          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-----  255 (466)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~-----  255 (466)
                      ++.+++++++  +++.+++.|++.|++.+.. .....++++++|+++||+++|+.+...++|..+++.+.+.+..     
T Consensus       113 ~~~~~~~~~~--s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~  189 (476)
T PLN00028        113 PAVFCMSLVS--SATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDA  189 (476)
T ss_pred             HHHHHHHHhc--CHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999988  8999999999999988764 4456789999999999999999988888888777666654432     


Q ss_pred             ----ccCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHH
Q 012315          256 ----RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF  331 (466)
Q Consensus       256 ----~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (466)
                          ..|||+.|++.+++.++..+..+++.++.|+..  .++.+     ++.+.++......+++.++++++|.+.+..+
T Consensus       190 ~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (476)
T PLN00028        190 GAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGN--YRELK-----KSGTMPKDSFSKVLRYGVTNYRTWILALTYG  262 (476)
T ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCc--hhhHH-----hcCccccccHHHHHHHHHcCchhHHHHHHHH
Confidence                258999999999888877666665554433221  00000     0000001111123566788899888887777


Q ss_pred             HHHHHHHHHHHHHHHHHHH--------------------------------H------------HHHHHhHHHHHHHHHH
Q 012315          332 CHNWGTFILLTWMPTYYNQ--------------------------------I------------MQSIGFLGPAFFLTQL  367 (466)
Q Consensus       332 ~~~~~~~~~~~~~~~~l~~--------------------------------~------------~~~~~~~~~~~~~~~~  367 (466)
                      +.......+.+++|.|+.+                                .            .......+.++.+...
T Consensus       263 ~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~  342 (476)
T PLN00028        263 YSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWL  342 (476)
T ss_pred             HHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHh
Confidence            6666667778888988865                                0            0001111111111222


Q ss_pred             hcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHH
Q 012315          368 SHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGL  447 (466)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~  447 (466)
                      ....+.+..+..+++.+++........+.+..+..|+++|++.|+.+..+.+|+.++|.+.+ ..+..+|+..|.+.+++
T Consensus       343 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~  421 (476)
T PLN00028        343 GRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVM  421 (476)
T ss_pred             cccchHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHH
Confidence            22223333333333333333334445556666777889999999998888888888887765 23346799999999888


Q ss_pred             HHHHHHHHHHhc
Q 012315          448 YLVGTAVWNLFS  459 (466)
Q Consensus       448 ~~~~~~~~~~~~  459 (466)
                      .+++.++.++.+
T Consensus       422 ~~i~~~~~~~~~  433 (476)
T PLN00028        422 IIACTLPVAFIH  433 (476)
T ss_pred             HHHHHHHHHhee
Confidence            888887776664

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=4.3e-30  Score=248.37  Aligned_cols=335  Identities=12%  Similarity=0.134  Sum_probs=242.5

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHH
Q 012315          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI  181 (466)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  181 (466)
                      .|......+++.+.... ....++.+|.+++++|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.++
T Consensus         8 ~~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~   86 (393)
T PRK09705          8 NFMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAV   86 (393)
T ss_pred             HHHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHH
Confidence            44444444444433322 36678899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhccc-Cch
Q 012315          182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GWP  260 (466)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-gw~  260 (466)
                      +.+++++++  +++.+++.|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++++.++. +||
T Consensus        87 ~~~~~~~a~--~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~  163 (393)
T PRK09705         87 GALMRELYP--QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWY  163 (393)
T ss_pred             HHHHHHHCc--chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            999999999  99999999999999999999999999999997 88999999999999999999999999988875 899


Q ss_pred             HHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHH
Q 012315          261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL  340 (466)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (466)
                      ..+.+.++..++..+..+...+++++++++    +               +...++.+++++.|.+.+..++....+...
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---------------~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~  224 (393)
T PRK09705        164 QTLAWWALPAVVALFAWWWQSAREVASSHK----T---------------TTTPVRVVFTPRAWTLGVYFGLINGGYASL  224 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccccC----C---------------CcCCcccccCHhHHHHHHHHHHHHHHHHHH
Confidence            988776665544333332222222211100    0               001234567888888877777777888889


Q ss_pred             HHHHHHHHHH------------------------------------HHHHHHhHHHHHHHHHHh-cCCchHHHHHHHHHH
Q 012315          341 LTWMPTYYNQ------------------------------------IMQSIGFLGPAFFLTQLS-HVDSPAMAVLCMACS  383 (466)
Q Consensus       341 ~~~~~~~l~~------------------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  383 (466)
                      .+|+|.|+++                                    .....+..+..+...... ...+..... . .+.
T Consensus       225 ~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~-~l~  302 (393)
T PRK09705        225 IAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW-A-MVC  302 (393)
T ss_pred             HHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH-H-HHH
Confidence            9999999887                                    122222222222222211 111111111 1 122


Q ss_pred             hhhhhhhhhhhhhh-hcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHHHHHhcC
Q 012315          384 QGTDAFSQSGLYSN-HQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLFST  460 (466)
Q Consensus       384 ~~~~~~~~~~~~~~-~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~  460 (466)
                      +.+.+...+..... .....| +++++.+|+.+..+++++.++|.+.|++.|. ++|...|.+.+++.+++.++...+.+
T Consensus       303 g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T PRK09705        303 GLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP  382 (393)
T ss_pred             HHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            22223333433333 333334 5899999999999999999999999999998 45888888887777777666665544


Q ss_pred             C
Q 012315          461 G  461 (466)
Q Consensus       461 ~  461 (466)
                      +
T Consensus       383 ~  383 (393)
T PRK09705        383 A  383 (393)
T ss_pred             c
Confidence            3

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=5.8e-30  Score=245.27  Aligned_cols=334  Identities=15%  Similarity=0.124  Sum_probs=251.5

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHhHhhhhh-ccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHH
Q 012315          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (466)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (466)
                      .++.+.+..+++++.+.....+++..+.+.+ ++|+|.+|.+++.+++.+++.++.++.|++.||+|.|+++.++.++.+
T Consensus        32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~  111 (462)
T PRK15034         32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            4678888889999999999999999998876 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-----hhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhh-
Q 012315          181 IATALTPVA-----AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI-  254 (466)
Q Consensus       181 ~~~~~~~~~-----~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~-  254 (466)
                      +..++.+++     +  +++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++...+. 
T Consensus       112 i~~~~~~~a~~~~~~--s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~  188 (462)
T PRK15034        112 IPCVWLGIAVQNPNT--PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIF  188 (462)
T ss_pred             HHHHHHHHHHcccCC--CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999887     6  899999999999998 6688999999999999999999999997777777776665554433 


Q ss_pred             ----c-------------ccCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhh
Q 012315          255 ----H-------------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLI  317 (466)
Q Consensus       255 ----~-------------~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (466)
                          +             ..+|+.++++..++.++..++.++..++.++.+.  +                  ..+..+.
T Consensus       189 ~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~--~------------------~~~~~~v  248 (462)
T PRK15034        189 VPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA--S------------------IADQLPV  248 (462)
T ss_pred             HHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc--C------------------HHHHHHH
Confidence                2             2347777778777777766666665444332111  1                  1124568


Q ss_pred             hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHhHHHHH
Q 012315          318 LSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ-----------------------------------IMQSIGFLGPAF  362 (466)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------------------------------~~~~~~~~~~~~  362 (466)
                      +|+|+.|.+.+.+++....+.++..++|.|+++                                   .....+++...+
T Consensus       249 lk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i  328 (462)
T PRK15034        249 LQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAI  328 (462)
T ss_pred             hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHH
Confidence            999999999999999999999999999999887                                   111111111111


Q ss_pred             HH----HHHhcC--CchHHHHHHHHHHhhhhhhhhhhhhhhhcccCcc----------------------chhhHHHHHH
Q 012315          363 FL----TQLSHV--DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPR----------------------YSGVLLGLSN  414 (466)
Q Consensus       363 ~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----------------------~~g~~~g~~~  414 (466)
                      ..    ......  .+.+.....++....+.+......+-.+...+|+                      +.|.+.|+..
T Consensus       329 ~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~  408 (462)
T PRK15034        329 FSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFIS  408 (462)
T ss_pred             HHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHH
Confidence            11    111111  1233333333333334444444444444443442                      6789999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHHHHHh
Q 012315          415 TAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLF  458 (466)
Q Consensus       415 ~~~~~g~~i~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~  458 (466)
                      ..+.+|+++.|.+.|...+. +++...|+...+.++++.++.+..
T Consensus       409 a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        409 AIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             HHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999887 779999999888888887765554

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=1e-29  Score=249.12  Aligned_cols=346  Identities=16%  Similarity=0.116  Sum_probs=236.2

Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccC---CChhhHHH---HHHHHHHHHHHHHhhhhhhhcccCcchHHHH
Q 012315          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFN---WNPATVGL---IQSSFFWGYLLTQIAGGIWADTVGGKAVLGF  174 (466)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~g~---~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~  174 (466)
                      +++..+...+++.++++++...++...|.+.++++   .+..+.+.   +.+...++..++++++|+++||+|||+++..
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            45556667778889999999999999999999984   55554444   4445555556999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhchh--------HHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHH
Q 012315          175 GVVWWSIATALTPVAAKLGLP--------FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTG  246 (466)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig  246 (466)
                      +.++++++.+++++++  ++.        .++++|+++|++.|..++...++++|++|+++|+++.++.+.+...|..++
T Consensus        99 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~  176 (432)
T PRK10406         99 SVCMMCFGSLVIACLP--GYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLA  176 (432)
T ss_pred             HHHHHHHHHHHHhhcC--CchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHH
Confidence            9999999999999988  653        588899999999999999999999999999999999999988888888888


Q ss_pred             hhhHHHhh--------cccCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhh
Q 012315          247 LAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLIL  318 (466)
Q Consensus       247 ~~~~~~l~--------~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (466)
                      +.+...+.        +.+|||++|++.+++.++.. ......||.++.       +.+.       .  ++..++++++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~-~~~~~~~e~~~~-------~~~~-------~--~~~~~~~~l~  239 (432)
T PRK10406        177 LLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVAL-WLRRQLDETSQQ-------ETRA-------L--KEAGSLKGLW  239 (432)
T ss_pred             HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH-HHHhcCCCCchH-------HHhh-------h--cccccHHHHH
Confidence            87665543        25799999998776665443 222223332211       1000       0  0122577888


Q ss_pred             cChhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHhHHH
Q 012315          319 SKPPVWALIVSHFC-HNWGTFILLTWMPTYYNQ-------------------------------------IMQSIGFLGP  360 (466)
Q Consensus       319 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~-------------------------------------~~~~~~~~~~  360 (466)
                      ++++.+...+...+ ....++.+.+|+|.|+++                                     .......++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~  319 (432)
T PRK10406        240 RNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLA  319 (432)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            98888776665544 366677888999999875                                     1111111111


Q ss_pred             HHH---HHH-HhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHH-HHHHHHHHHHHHhcc
Q 012315          361 AFF---LTQ-LSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVL-AGVFGTAATGYILQH  434 (466)
Q Consensus       361 ~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~-g~~i~~~~~g~l~~~  434 (466)
                      ++.   ... .....+....+....+..+..+...+....+..|.+| +.|+++.|+.+..+++ .+...|.+.+.+.+.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~  399 (432)
T PRK10406        320 ALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSI  399 (432)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            111   111 1111222222222222222222333445566777777 6899999999988765 344578888866444


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHhcCCCccc
Q 012315          435 GSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV  465 (466)
Q Consensus       435 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (466)
                      +.+...+++.+++.+++.+..++++++.|..
T Consensus       400 g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~  430 (432)
T PRK10406        400 GMETAFFWYVTLMAVVAFLVSLMLHRKGKGM  430 (432)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            5576677777777777777766676666553

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=2e-30  Score=249.95  Aligned_cols=332  Identities=20%  Similarity=0.210  Sum_probs=242.9

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHH
Q 012315          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (466)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (466)
                      .+....+..+.. ...+.+++..|.+.+++|++..++|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+
T Consensus         5 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~   83 (377)
T TIGR00890         5 VLVGTVIMCFTS-GYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFT   83 (377)
T ss_pred             EeHHHHHHHHHh-hHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHH
Confidence            333344433433 3466788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHH
Q 012315          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY  264 (466)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~  264 (466)
                      ++++++  +++.+++.|++.|++.+..++.....+.+++| ++|++++++...+.++|..+++++.+.+.+..|||+.|+
T Consensus        84 ~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~  160 (377)
T TIGR00890        84 FYAIAD--SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFI  160 (377)
T ss_pred             HHHHHH--HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHH
Confidence            999999  99999999999999999888888888999996 689999999999999999888878888888889999999


Q ss_pred             HHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 012315          265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM  344 (466)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (466)
                      +.+++.++..+..++..+++++++++.+++            .+.++.+.++.++++.+|...+..++..........+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (377)
T TIGR00890       161 YMGIIFLLVIVLGAFLIGYPPGQLIKTNIE------------VSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLY  228 (377)
T ss_pred             HHHHHHHHHHHHHHHheecCchhccccCcc------------cchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHH
Confidence            999888877766655554433221110000            00112245677888888877777666666655566666


Q ss_pred             HHHHHH------------------------------------HHHHHHhHHHHHHHHHHhcCC--chHHHHHHHHHHhhh
Q 012315          345 PTYYNQ------------------------------------IMQSIGFLGPAFFLTQLSHVD--SPAMAVLCMACSQGT  386 (466)
Q Consensus       345 ~~~l~~------------------------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  386 (466)
                      +.|.++                                    .....+.+...+........+  ..........+.+..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  308 (377)
T TIGR00890       229 KPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFT  308 (377)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHH
Confidence            666554                                    111122222222222222222  112222222333333


Q ss_pred             hhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 012315          387 DAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT  452 (466)
Q Consensus       387 ~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  452 (466)
                      .+...+.......+..| ++++++.|+.+....+|+.++|.+.|.+.|..||+..|.+.+++.+++.
T Consensus       309 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       309 WGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             hccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            33333444455666665 6899999999999999999999999999999999999988887776654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=2.8e-29  Score=242.09  Aligned_cols=335  Identities=14%  Similarity=0.152  Sum_probs=240.7

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHH
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL  185 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  185 (466)
                      +....+..+..+.......+.+|.+.+++|.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l   84 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM   84 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            44556667777778888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHH
Q 012315          186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS  265 (466)
Q Consensus       186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~  265 (466)
                      +++++  +++.+++.|++.|++.+...+....++.+++|+++|++++++...+..+|..++|++++++.+..|||+.|++
T Consensus        85 ~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~  162 (382)
T PRK10091         85 FTLSS--SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL  162 (382)
T ss_pred             HHHhC--cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence            99999  9999999999999999988888899999999999999999999999999999999999999998999999999


Q ss_pred             HhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  345 (466)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (466)
                      .+++.++..+...+..|+.+++++. +  .++               . .+.++++..|......++.........++++
T Consensus       163 ~~~~~~~~~~~~~~~lp~~~~~~~~-~--~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (382)
T PRK10091        163 IAVFNIAVLASIYFWVPDIRDEAKG-G--LRE---------------Q-FHFLRSPAPWLIFAATMFGNAGVFAWFSYIK  223 (382)
T ss_pred             HHHHHHHHHHHHHHhCCCCCccccc-C--HHH---------------H-HHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888777666555555554321110 0  000               1 1346777777666555555444545555666


Q ss_pred             HHHHH-------------------------------------HHHHHHhHHHHHHHHHH-hcCCchHHHHHHHHHHhhh-
Q 012315          346 TYYNQ-------------------------------------IMQSIGFLGPAFFLTQL-SHVDSPAMAVLCMACSQGT-  386 (466)
Q Consensus       346 ~~l~~-------------------------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-  386 (466)
                      .|+.+                                     .....+..+.++..+.. ...+..+.......+.+.+ 
T Consensus       224 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~  303 (382)
T PRK10091        224 PYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGL  303 (382)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            66654                                     11222222222222111 1122222222222222222 


Q ss_pred             hhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHHHHHhcCCCc
Q 012315          387 DAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLFSTGEK  463 (466)
Q Consensus       387 ~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (466)
                      .+...+.......+..+ +..+.+  ..+....+|..+||.+.|.+.|. .+|+..+.+.+++.++.......+.++|+
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (382)
T PRK10091        304 FALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKR  380 (382)
T ss_pred             HhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            22222222223333333 344444  34677899999999999999996 78999999988877777766666544443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.98  E-value=3.6e-29  Score=243.62  Aligned_cols=338  Identities=13%  Similarity=0.081  Sum_probs=247.0

Q ss_pred             CCchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHH
Q 012315           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (466)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  178 (466)
                      +++.+.....+.+..+...+....+.+.+|.+.+++|.+..+.++..+.+.++..+++++.|+++||+|||+++..+.++
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   87 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF   87 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            34566667777777888888888888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC
Q 012315          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (466)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g  258 (466)
                      .+++.+++.+++  +++.+++.|++.|++.+...+...+.+.|++|+++|++++++......+|..++|.+++++.+..+
T Consensus        88 ~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~  165 (406)
T PRK15402         88 FILTCLAILLAQ--SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP  165 (406)
T ss_pred             HHHHHHHHHHHc--cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            999999998888  999999999999999998888899999999999999999999998889999999999999999899


Q ss_pred             chHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHH
Q 012315          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTF  338 (466)
Q Consensus       259 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (466)
                      ||+.|++.+++.++..+...+..|+++++.++..+ ..            +...++++++++|.++...+..++......
T Consensus       166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (406)
T PRK15402        166 WRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLS-LK------------ELGRDYKLVLKNRRFVAGALALGLVSLPLL  232 (406)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCCCcccccccc-HH------------HHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            99999998888777666555555544322111100 00            011245678899998887777766666666


Q ss_pred             HHHHHHHHHHHH-------------------------------------HHHHHHhHHHHHHHHHHh-----cCCchHHH
Q 012315          339 ILLTWMPTYYNQ-------------------------------------IMQSIGFLGPAFFLTQLS-----HVDSPAMA  376 (466)
Q Consensus       339 ~~~~~~~~~l~~-------------------------------------~~~~~~~~~~~~~~~~~~-----~~~~~~~~  376 (466)
                      ....+.|.|+.+                                     .....+.+...+......     ...+.+..
T Consensus       233 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  312 (406)
T PRK15402        233 AWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWL  312 (406)
T ss_pred             HHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHH
Confidence            666667777654                                     111111111111111111     11222333


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Q 012315          377 VLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVG  451 (466)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~  451 (466)
                      +...++.+.+.+...+..........++++|++.++++....++..+|+.+.+.+.+..+.........+..++.
T Consensus       313 ~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        313 TAGLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            333333333434444444444444456799999999999999999999999999999866544333333333333

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.98  E-value=4.4e-29  Score=242.54  Aligned_cols=338  Identities=19%  Similarity=0.169  Sum_probs=237.5

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHH
Q 012315          102 RWFIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (466)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (466)
                      .++.+....+..++..++..+..+.+|. +.+++|.|+.++|++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~   92 (399)
T PRK05122         13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCA   92 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHH
Confidence            3445666777777788888888888887 678899999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHhh------hchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhh
Q 012315          181 IATALTPVAAK------LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI  254 (466)
Q Consensus       181 ~~~~~~~~~~~------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~  254 (466)
                      ++.+.+.+...      .+++.+++.|+++|++.+...+...+++.+++|+++|++++++.+....+|.++|+.+++++.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~  172 (399)
T PRK05122         93 LSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY  172 (399)
T ss_pred             HHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence            87666554320      145678899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHH
Q 012315          255 HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHN  334 (466)
Q Consensus       255 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (466)
                      +.+||+..+++.+++.++..+.. ...|+.+++  + ++                 +.++++.++  +++.......+..
T Consensus       173 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~-~~-----------------~~~~~~~~~--~~~~~~~~~~~~~  229 (399)
T PRK05122        173 HWGGLAGLGLLIMLLALLGLLLA-RPRPAVPPV--K-GE-----------------RLPFRRVLG--RVWPYGMGLALAS  229 (399)
T ss_pred             HcccHHHHHHHHHHHHHHHHHHH-hcCCCCCCC--C-cc-----------------chhHHHHHH--HHHHHHHHHHHHH
Confidence            99999998887665544333222 111211110  0 00                 001222222  1222222223333


Q ss_pred             HHHHHHHHHHHHHHHH----------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHH
Q 012315          335 WGTFILLTWMPTYYNQ----------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCM  380 (466)
Q Consensus       335 ~~~~~~~~~~~~~l~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (466)
                      ..+.....+++.|+.+                                  .....+....++........++.+..+...
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (399)
T PRK05122        230 IGFGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGA  309 (399)
T ss_pred             HHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            4444455555655544                                  122222222222222333334444444444


Q ss_pred             HHHhhhhhhhhhhhhhhhcccC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHhc
Q 012315          381 ACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFS  459 (466)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~-p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  459 (466)
                      ++.+++.+...+.......+.. ++++|++.|+++....+|..+++.+.|.+.|..||+..|++.+++.+++.++..++.
T Consensus       310 ~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (399)
T PRK05122        310 ALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY  389 (399)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4444444444555444444444 479999999999999999999999999999999999999998888888877766664


Q ss_pred             CCC
Q 012315          460 TGE  462 (466)
Q Consensus       460 ~~~  462 (466)
                      +++
T Consensus       390 ~~~  392 (399)
T PRK05122        390 RRA  392 (399)
T ss_pred             ccc
Confidence            443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.98  E-value=9.7e-30  Score=250.18  Aligned_cols=352  Identities=13%  Similarity=0.116  Sum_probs=252.8

Q ss_pred             CchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHH
Q 012315          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (466)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (466)
                      .++|.++..+++...........++...|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.
T Consensus        15 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   94 (455)
T TIGR00892        15 GWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA   94 (455)
T ss_pred             CcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence            45677777777777666666666788899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhchhHHHH-HHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC
Q 012315          180 SIATALTPVAAKLGLPFLLV-VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (466)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~-~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g  258 (466)
                      +++.+++++++  +++.+++ .|++.|++.+...+...+++.++++ ++|++++|+.+.+..+|..++|++++++.+.+|
T Consensus        95 ~~~~~~~~~~~--~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g  171 (455)
T TIGR00892        95 SLGMILASFSS--NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG  171 (455)
T ss_pred             HHHHHHHHHhh--hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence            99999999988  8888765 4789999998776777888899996 789999999999999999999999999999999


Q ss_pred             chHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCCh-HHH-HHHhhccc-----CCCCCCCcchhhhhcChhHHHHHHHHH
Q 012315          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP-AEK-KLIVSSCA-----SKEPVKTIPWGLILSKPPVWALIVSHF  331 (466)
Q Consensus       259 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (466)
                      ||++|++.+++.++..+..++..++.+..+....+ ++. +......+     ..++..+....+++++|.++...+..+
T Consensus       172 wr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (455)
T TIGR00892       172 WRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNV  251 (455)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHH
Confidence            99999999888776655444443322211000000 000 00000000     000000111124778999988888777


Q ss_pred             HHHHHHHHHHHHHHHHHHH----------------------------------------HHHHHHhHHHHHHHHHHhcCC
Q 012315          332 CHNWGTFILLTWMPTYYNQ----------------------------------------IMQSIGFLGPAFFLTQLSHVD  371 (466)
Q Consensus       332 ~~~~~~~~~~~~~~~~l~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~  371 (466)
                      +..........+++.|+++                                        .....+.+..++..+.....+
T Consensus       252 l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~  331 (455)
T TIGR00892       252 IMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAG  331 (455)
T ss_pred             HHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7777777778888888876                                        000011111111111222333


Q ss_pred             chHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccC-cchhHHHHHHHHHH
Q 012315          372 SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHG-SWDDVFKVSVGLYL  449 (466)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~-g~~~~~~~~~~~~~  449 (466)
                      +.+.+++..++.+...+...+.......+..| +++++++|+++....+|++++|.+.|.+.|.. +|+..|++.+++.+
T Consensus       332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~l  411 (455)
T TIGR00892       332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVV  411 (455)
T ss_pred             hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHH
Confidence            44444444444445555555566666666555 68999999999999999999999999999985 69999988887776


Q ss_pred             HHHHH
Q 012315          450 VGTAV  454 (466)
Q Consensus       450 ~~~~~  454 (466)
                      ++.+.
T Consensus       412 i~~~~  416 (455)
T TIGR00892       412 SAGLF  416 (455)
T ss_pred             HHHHH
Confidence            66553

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.98  E-value=1.1e-29  Score=249.23  Aligned_cols=362  Identities=16%  Similarity=0.249  Sum_probs=249.2

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHH
Q 012315          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI  181 (466)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  181 (466)
                      +|..+....+.+...+.....+....|.+++ +|++..+.+++.+++.++..+++++.|+++||+|||+++..+.++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence            4556666666777777777777777887776 599999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh--hchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc-ccC
Q 012315          182 ATALTPVAAK--LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFG  258 (466)
Q Consensus       182 ~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~-~~g  258 (466)
                      +.++..+.+.  .+++.+.+.|++.|++.+..++.....+.|++|+++|++++++++.+.++|..+++.+.+...+ ..|
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  183 (438)
T TIGR00712       104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND  183 (438)
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence            8887766431  1567778889999999999899899999999999999999999999999999999988776544 468


Q ss_pred             chHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHH-HHHH-hh-cccCCCC--CCCcchhhhhcChhHHHHHHHHHHH
Q 012315          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAE-KKLI-VS-SCASKEP--VKTIPWGLILSKPPVWALIVSHFCH  333 (466)
Q Consensus       259 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  333 (466)
                      ||..|++.+++.++..+..++..+|++++....+.++ +... .+ ..+.+++  .++...+.+++++.+|...+..++.
T Consensus       184 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (438)
T TIGR00712       184 WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFV  263 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHH
Confidence            9999999888887766666666666543221100000 0000 00 0000000  0011123467899999888887787


Q ss_pred             HHHHHHHHHHHHHHHHH--------------------------------HH-----HHHHhH---HHHHHHH--HHhcCC
Q 012315          334 NWGTFILLTWMPTYYNQ--------------------------------IM-----QSIGFL---GPAFFLT--QLSHVD  371 (466)
Q Consensus       334 ~~~~~~~~~~~~~~l~~--------------------------------~~-----~~~~~~---~~~~~~~--~~~~~~  371 (466)
                      ....++..+++|.|+++                                ..     ...+..   ...+...  ......
T Consensus       264 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (438)
T TIGR00712       264 YLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAG  343 (438)
T ss_pred             HHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCC
Confidence            77778888999999986                                00     000000   0000011  111111


Q ss_pred             chHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHH-HHHHHHHHHHhccCcchhHHHHHHHHHH
Q 012315          372 SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAG-VFGTAATGYILQHGSWDDVFKVSVGLYL  449 (466)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~-~i~~~~~g~l~~~~g~~~~~~~~~~~~~  449 (466)
                      +.+......+..+...............+..| +.+|+++|+++...++|+ +++|.+.|.+.|..||...|.+..++.+
T Consensus       344 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~  423 (438)
T TIGR00712       344 NPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI  423 (438)
T ss_pred             chHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHH
Confidence            22221111111111111111111223445555 689999999999888875 6899999999999999999999888888


Q ss_pred             HHHHHHHHhcCCCcc
Q 012315          450 VGTAVWNLFSTGEKV  464 (466)
Q Consensus       450 ~~~~~~~~~~~~~~~  464 (466)
                      ++.+..+++.+++|+
T Consensus       424 ~~~~~~~~~~~~~~~  438 (438)
T TIGR00712       424 LAVILLIVVMIGEKR  438 (438)
T ss_pred             HHHHHHHHHHhhccC
Confidence            888887777776653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK12382 putative transporter; Provisional

Probab=99.97  E-value=8.6e-29  Score=239.87  Aligned_cols=333  Identities=16%  Similarity=0.126  Sum_probs=228.6

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHH
Q 012315          105 IVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT  183 (466)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  183 (466)
                      .+....+..++......+..+.+|. +.+++|.|..++|++.+++.++..+++++.|+++||+|||+++..+.+...++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~   95 (392)
T PRK12382         16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAG   95 (392)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence            3444555566666677777888886 678999999999999999999999999999999999999999999988777665


Q ss_pred             HHHHHH---h---hhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhccc
Q 012315          184 ALTPVA---A---KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF  257 (466)
Q Consensus       184 ~~~~~~---~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~  257 (466)
                      +.+...   +   ..+++.+++.|+++|++.+...+...+++.+++|+++|++++++++.+..+|..+||++++++.+.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~  175 (392)
T PRK12382         96 LAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF  175 (392)
T ss_pred             HHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            433221   1   1277889999999999999888888999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHH
Q 012315          258 GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGT  337 (466)
Q Consensus       258 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (466)
                      ||+..+.+..+..++.... ....|+.++++++ +                   .+.++.++  .+|...+..++.....
T Consensus       176 g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-------------------~~~~~~~~--~~~~~~~~~~l~~~~~  232 (392)
T PRK12382        176 GFAALALTTMVLPLLAWAF-NGTVRKVPAHAGE-R-------------------PSLWSVVG--LIWKPGLGLALQGVGF  232 (392)
T ss_pred             ChHHHHHHHHHHHHHHHHH-HHhccCCCCCccc-C-------------------chHHHHHH--HHHHhHHHHHHHHHHH
Confidence            9998777654443332221 1111221111000 0                   01111111  1222112222233344


Q ss_pred             HHHHHHHHHHHHH----------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 012315          338 FILLTWMPTYYNQ----------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACS  383 (466)
Q Consensus       338 ~~~~~~~~~~l~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (466)
                      .....+.+.|+++                                  .....+.....+........++.+......++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (392)
T PRK12382        233 AVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALT  312 (392)
T ss_pred             hHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            4455555666554                                  111112222222222233334444444444444


Q ss_pred             hhhhhhhhhhhhhhhcccC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHhcC
Q 012315          384 QGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFST  460 (466)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~-p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  460 (466)
                      +.+.+...+.......+.. +++||++.|+.+....+|..++|.+.|.+.|+.||+..|.+.+++.+++.++.+...+
T Consensus       313 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (392)
T PRK12382        313 GAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSFR  390 (392)
T ss_pred             HHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhcc
Confidence            5554555555555555544 5799999999999999999999999999999999999999999888888777665543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.97  E-value=4.4e-29  Score=244.77  Aligned_cols=340  Identities=16%  Similarity=0.181  Sum_probs=234.8

Q ss_pred             CchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHH
Q 012315          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (466)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (466)
                      +.+++.+..+.+.++..+++.....+..|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~   93 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            34566778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCc
Q 012315          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (466)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw  259 (466)
                      +++.+++++++  +++.++++|++.|++.+..++....++.|++|+++|++++++...+..+|.++++.+.+.+.+.+||
T Consensus        94 ~~~~~~~~~~~--~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w  171 (426)
T PRK12307         94 SVGTGLSGLAS--GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGW  171 (426)
T ss_pred             HHHHHHHHHHh--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCH
Confidence            99999999998  9999999999999999999999999999999999999999999999999999999999999998999


Q ss_pred             hHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHH---HHHHH
Q 012315          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF---CHNWG  336 (466)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  336 (466)
                      |+.|++..+..++ .+......|++++..    +++.+...+..+...+.....++++++++.++.......   +....
T Consensus       172 ~~~f~i~~~~~~~-~~~~~~~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (426)
T PRK12307        172 RAAFFVGLLPVLL-VIYIRARAPESKEWE----EAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGA  246 (426)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHCCCChHHH----HhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence            9999875433222 221111112211100    000000000000000111225677888888765443322   22223


Q ss_pred             HHHHHHHHHHHHHH------------------------------------HHHHHHhHHHHHHHHHHh-cCCchHHHHHH
Q 012315          337 TFILLTWMPTYYNQ------------------------------------IMQSIGFLGPAFFLTQLS-HVDSPAMAVLC  379 (466)
Q Consensus       337 ~~~~~~~~~~~l~~------------------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  379 (466)
                      ...+..++|.|+++                                    .....+.+...+...... ...........
T Consensus       247 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (426)
T PRK12307        247 NWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGA  326 (426)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence            33466778888766                                    111122222222211111 11111111111


Q ss_pred             HHHHhhh-hhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Q 012315          380 MACSQGT-DAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVG  446 (466)
Q Consensus       380 ~~~~~~~-~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~  446 (466)
                      ..++.+. .....+.......+..| +.+|+++|+.+....+++.++|.+.|++.++.|+....++..+
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~  395 (426)
T PRK12307        327 CLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVA  395 (426)
T ss_pred             HHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            1111111 11112333345566666 6899999999999999999999999999999887654444333

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.97  E-value=3.4e-29  Score=243.86  Aligned_cols=342  Identities=15%  Similarity=0.169  Sum_probs=235.1

Q ss_pred             CCchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHH
Q 012315           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (466)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  178 (466)
                      .+++|+.+..+++.++..+++....++..|.+.+++|++..+.+++.+++.++..+++++.|+++||+|||+++..+.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   86 (405)
T TIGR00891         7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL   86 (405)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            45788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC
Q 012315          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (466)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g  258 (466)
                      .+++.+++.+.+  +++.+++.|++.|++.+..++...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+
T Consensus        87 ~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  164 (405)
T TIGR00891        87 FSAGTLACGFAP--GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG  164 (405)
T ss_pred             HHHHHHHHHHhc--cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999998  999999999999999999999999999999999999999999999999999999999999988766


Q ss_pred             --chHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChH-HHHHHhhcccCCCCCCCc-------chhhhhcCh--hHHHH
Q 012315          259 --WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA-EKKLIVSSCASKEPVKTI-------PWGLILSKP--PVWAL  326 (466)
Q Consensus       259 --w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~--~~~~~  326 (466)
                        ||+.|++.++..++.. ......||+++.+++.+++ +.....++....++..+.       ..++..+++  .+...
T Consensus       165 ~~w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (405)
T TIGR00891       165 DGWRALFFISILPIIFAL-WLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYL  243 (405)
T ss_pred             ccHHHHHHHHHHHHHHHH-HHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHH
Confidence              9999987655544433 3333344433211110000 000000000000000000       001101111  12222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHhHHH-HHHHHHHh
Q 012315          327 IVSHFCHNWGTFILLTWMPTYYNQ-------------------------------------IMQSIGFLGP-AFFLTQLS  368 (466)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~l~~-------------------------------------~~~~~~~~~~-~~~~~~~~  368 (466)
                      .+...+..........++|.|+.+                                     .....+.... ...+....
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~  323 (405)
T TIGR00891       244 VVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFA  323 (405)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHH
Confidence            233333344444556677777754                                     1111111111 11111112


Q ss_pred             cCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCc-chhHHHH
Q 012315          369 HVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-WDDVFKV  443 (466)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~  443 (466)
                      ...+.+...+...+.++......+.......+..| +++++++|+.+....+|+.++|++.|.+.|+.| |+..+..
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       324 IGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             hCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            22233333333233333333333444555666666 699999999999999999999999999999977 8766554

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.8e-29  Score=229.25  Aligned_cols=344  Identities=18%  Similarity=0.192  Sum_probs=285.8

Q ss_pred             CCchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHH
Q 012315           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (466)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  178 (466)
                      ++.+++.+.+..+...+.+..+..++++.+.+.+++|+|+.|.+++.++..+...+..++.|.+.||+|.|++..++.++
T Consensus         9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l   88 (417)
T COG2223           9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL   88 (417)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence            34567788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh-hchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhccc
Q 012315          179 WSIATALTPVAAK-LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF  257 (466)
Q Consensus       179 ~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~  257 (466)
                      ..+-.+..+++.. +++|.+++.+++.|++ |..+....+++++|||++++|.++|++. ..++|..+...++..++...
T Consensus        89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~  166 (417)
T COG2223          89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF  166 (417)
T ss_pred             HHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence            9999999988862 2456999999999998 4567899999999999999999999999 99999999999999999988


Q ss_pred             C---chHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHH
Q 012315          258 G---WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHN  334 (466)
Q Consensus       258 g---w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (466)
                      |   |+.+..+.....++..+..++...+.++.++..++...               ..++.++++++.|.+.+.++...
T Consensus       167 g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~---------------~~~~~v~~~~~~W~lsllY~~tF  231 (417)
T COG2223         167 GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP---------------AQLKAVFSNKDTWLLSLLYFATF  231 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch---------------hHHHHHhcCcchHHHHHHHHHHH
Confidence            8   99999998888888888888877776654322222111               13566889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-------------------------------------HHHHHHhHHHHHHHHHHhcC-------
Q 012315          335 WGTFILLTWMPTYYNQ-------------------------------------IMQSIGFLGPAFFLTQLSHV-------  370 (466)
Q Consensus       335 ~~~~~~~~~~~~~l~~-------------------------------------~~~~~~~~~~~~~~~~~~~~-------  370 (466)
                      .++.++..++|.|+++                                     ......+..+++........       
T Consensus       232 G~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~  311 (417)
T COG2223         232 GGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHG  311 (417)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccC
Confidence            9999999999999998                                     22233333333333332222       


Q ss_pred             CchHHHHHHHHHHhhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHH
Q 012315          371 DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-WDDVFKVSVGLYL  449 (466)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~  449 (466)
                      .+.+..+..++....+.+......+..+..++|++.|.+.|++...+.+|++.-|...|...+..| +...|++...+.+
T Consensus       312 ~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~  391 (417)
T COG2223         312 GSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYL  391 (417)
T ss_pred             cchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            345555665666666777778888888888899999999999999999999999999999999955 8999999998888


Q ss_pred             HHHHHHHHhc
Q 012315          450 VGTAVWNLFS  459 (466)
Q Consensus       450 ~~~~~~~~~~  459 (466)
                      ++.+......
T Consensus       392 ~a~v~~~~~y  401 (417)
T COG2223         392 VALVLTWALY  401 (417)
T ss_pred             HHHHHHHHHH
Confidence            8887655553

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.97  E-value=1.1e-28  Score=245.62  Aligned_cols=331  Identities=15%  Similarity=0.109  Sum_probs=249.2

Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHH
Q 012315          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (466)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (466)
                      ++|..+..+++..++...+..+++..+|.+.+++|.+..+.+|+.+.+.++..++.+++|+++||+|||+++.++.++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~   82 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG   82 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            46778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhccc-CCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCc
Q 012315          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (466)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw  259 (466)
                      ++.+++++++  |++.++++|+++|+|.+...+.....+.+++ |+++|++++|++.....+|..+||.+++++.+++||
T Consensus        83 ~~~~~~~~a~--~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gw  160 (495)
T PRK14995         83 LASLAAAFSP--TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYW  160 (495)
T ss_pred             HHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence            9999999999  9999999999999999998888888887776 678999999999999999999999999999999999


Q ss_pred             hHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHH------------HHhhccc-----------------------
Q 012315          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKK------------LIVSSCA-----------------------  304 (466)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-----------------------  304 (466)
                      |+.|++...+.++..++..+..|++++++.+..+....            .......                       
T Consensus       161 r~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~  240 (495)
T PRK14995        161 GSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI  240 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence            99999988777776666666666654322211110000            0000000                       


Q ss_pred             --CCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------
Q 012315          305 --SKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ--------------------------------  350 (466)
Q Consensus       305 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------------------------  350 (466)
                        +.+..++.--.+++|+|.++...+..++......+...++|.|+++                                
T Consensus       241 ~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~  320 (495)
T PRK14995        241 RTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVS  320 (495)
T ss_pred             HHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0000111111357889988888777777777777888888888875                                


Q ss_pred             -----HHHHHHhHHHHHHHHHH---hcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcc-cCccchhhHHHHHHHHHHHHH
Q 012315          351 -----IMQSIGFLGPAFFLTQL---SHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAG  421 (466)
Q Consensus       351 -----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~~~g~~~~~~~~g~  421 (466)
                           .....+.+...+....+   ...++.+......++.+++.+...+.......+ ..+++++.+.++.++...+|+
T Consensus       321 r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~  400 (495)
T PRK14995        321 RLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGA  400 (495)
T ss_pred             HcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHH
Confidence                 22222333222222211   222334444444455455555555444444444 445799999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 012315          422 VFGTAATGYILQ  433 (466)
Q Consensus       422 ~i~~~~~g~l~~  433 (466)
                      .+|+.+.|.+.+
T Consensus       401 ~~G~ai~g~i~~  412 (495)
T PRK14995        401 GLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999865

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.97  E-value=1.8e-28  Score=239.07  Aligned_cols=338  Identities=16%  Similarity=0.137  Sum_probs=241.8

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhh-----HHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHH
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPAT-----VGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (466)
                      +...+++.++.........+.+|.+.+++|.+..+     .|++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   95 (408)
T PRK09874         16 LTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMG   95 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHH
Confidence            44555666777777788888999999999988654     4899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCch
Q 012315          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP  260 (466)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~  260 (466)
                      ++.+++.+.+  +++.+++.|++.|++.+ ..+....++.+++|+++|++++++.+....+|..++|.+++.+.+.++|+
T Consensus        96 ~~~~~~~~~~--~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  172 (408)
T PRK09874         96 IVMVLMGLAQ--NIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLR  172 (408)
T ss_pred             HHHHHHHHHh--hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            9998888888  89999999999999865 46777888999999999999999999999999999999999999989999


Q ss_pred             HHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHH-HHHHHHHHHHHH
Q 012315          261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALI-VSHFCHNWGTFI  339 (466)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  339 (466)
                      +.|++.+++.++..+...+..++++++.++.++.+.+               +..+.+++++++... ...++.......
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (408)
T PRK09874        173 PVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHMR---------------EVVTSLKNPKLVLSLFVTTLIIQVATGS  237 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcccccchhhhHHH---------------HHHHhCcCCchHHHHHHHHHHHHHHHHH
Confidence            9999988887776665555555543221111100000               122345566554322 222333333333


Q ss_pred             HHHHHHHHHHH----------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHH
Q 012315          340 LLTWMPTYYNQ----------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLC  379 (466)
Q Consensus       340 ~~~~~~~~l~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (466)
                      ...+++.|..+                                        .....+.....+........++.+...+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (408)
T PRK09874        238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGIL  317 (408)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            44444544443                                        11111111122222222223344444444


Q ss_pred             HHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHh
Q 012315          380 MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  458 (466)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  458 (466)
                      .++.+.+.+...+.......+..| +++|+.+|+.+....+|..++|.+.|.+.+..||+..|.+.+++.+++.+.....
T Consensus       318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        318 RFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555554 6899999999999999999999999999999999999999998888877766654


Q ss_pred             cCC
Q 012315          459 STG  461 (466)
Q Consensus       459 ~~~  461 (466)
                      .++
T Consensus       398 ~~~  400 (408)
T PRK09874        398 LRR  400 (408)
T ss_pred             HHH
Confidence            333

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.97  E-value=4.5e-30  Score=247.66  Aligned_cols=328  Identities=17%  Similarity=0.219  Sum_probs=240.6

Q ss_pred             HHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhh
Q 012315          112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK  191 (466)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~  191 (466)
                      .++..+++...++...|.+.+++|++..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++.+++ 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-   81 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST-   81 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh-
Confidence            4566777888899999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             hchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHh-hhHHHhhcccCchHHHHHHhHHH
Q 012315          192 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGL-AFSPFLIHRFGWPSVFYSFGSLG  270 (466)
Q Consensus       192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~-~~~~~l~~~~gw~~~~~~~~~~~  270 (466)
                       +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++| .+++.+.+..+|++.|++.+++.
T Consensus        82 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T TIGR00881        82 -SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIA  160 (379)
T ss_pred             -hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence             9999999999999999999999999999999999999999999999999999999 57777777889999999888877


Q ss_pred             HHHHHHHhhhcccCCCCCCCCChHHH-HHH----hhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          271 TVWFTVWLSKAHSSPAEDPQLRPAEK-KLI----VSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  345 (466)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (466)
                      ++..+...+..+++++.++..+.++. .+.    .++.+++.+..+..+++++++|.+|.+.+..++..........+.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (379)
T TIGR00881       161 IIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSP  240 (379)
T ss_pred             HHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666666555554432211111000 000    0000011111223456778899999888888888888888889999


Q ss_pred             HHHHH----------------------------------------HHHHHHhHHHHHHHHHHhc--CCchHHHHHHHHHH
Q 012315          346 TYYNQ----------------------------------------IMQSIGFLGPAFFLTQLSH--VDSPAMAVLCMACS  383 (466)
Q Consensus       346 ~~l~~----------------------------------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  383 (466)
                      .|+.+                                        .............+.....  ..+.+......+..
T Consensus       241 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (379)
T TIGR00881       241 LYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFAL  320 (379)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence            99876                                        0000000011111111111  11222222222222


Q ss_pred             hhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHH
Q 012315          384 QGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVF  441 (466)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~  441 (466)
                      +.......+.......+..| +.|+++.|+.+....+|+.++|.+.|.+.|..||+..|
T Consensus       321 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       321 GFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            22222223333445556555 69999999999999999999999999999998887653

>TIGR00897 2A0118 polyol permease family

Probab=99.97  E-value=3e-28  Score=236.53  Aligned_cols=342  Identities=13%  Similarity=0.120  Sum_probs=239.7

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHH
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL  185 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  185 (466)
                      +....++.+............++.+.+++|.++.+.|++.+.+.++..+++++.|++.||+|||+++..+.++.+++.++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~   94 (402)
T TIGR00897        15 LLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAA   94 (402)
T ss_pred             hhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            44444555444555455555667777899999999999999999999999999999999999999999999999888765


Q ss_pred             HHHH-h-hhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHH-HHHhhhHHHhhcccCchHH
Q 012315          186 TPVA-A-KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGS-VTGLAFSPFLIHRFGWPSV  262 (466)
Q Consensus       186 ~~~~-~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~ig~~~~~~l~~~~gw~~~  262 (466)
                      +.+. . ..+++.+++.|++.|++.+...+...+.+.+++|+++|++++|+.+.+.++|. .++|.+++++.+.+||+..
T Consensus        95 ~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~  174 (402)
T TIGR00897        95 FIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNT  174 (402)
T ss_pred             HHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHH
Confidence            5321 1 11678888899999999888777888889999999999999999999999997 6899999999988897766


Q ss_pred             HHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHH
Q 012315          263 FYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT  342 (466)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (466)
                      ++......++..++..+..++.+++++..++++           ..+.+..++.++++|.+|...+..++.....+...+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (402)
T TIGR00897       175 LWSALAFVLTGGVIALFSNKDIFTPQHMQTREK-----------FSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAV  243 (402)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCcccccCCcc-----------hhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Confidence            554444333333333333333221111100000           000112356788999999888888888888888889


Q ss_pred             HHHHHHHH-------------------------------------HHHHHHhHHHHH---HHHHHh--cCCchHHHHHHH
Q 012315          343 WMPTYYNQ-------------------------------------IMQSIGFLGPAF---FLTQLS--HVDSPAMAVLCM  380 (466)
Q Consensus       343 ~~~~~l~~-------------------------------------~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~  380 (466)
                      +.|.|+++                                     .....+.+...+   .+....  ..++.+......
T Consensus       244 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (402)
T TIGR00897       244 FLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIA  323 (402)
T ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHH
Confidence            99999876                                     111111111111   111111  122333333333


Q ss_pred             HHHhhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHhc
Q 012315          381 ACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFS  459 (466)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  459 (466)
                      ++.+.+.+...+ ......+..|+++|++.|+.+....+|+.++|.+.|.+.|..|+...+++.+++.+++.++..+++
T Consensus       324 ~~~G~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~~  401 (402)
T TIGR00897       324 IALGIFLAGYVP-LAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFIR  401 (402)
T ss_pred             HHHHHHHHHHHH-HHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence            333333333333 334455677889999999999999999999999999999999999999999988888777766553

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.97  E-value=4.4e-28  Score=241.07  Aligned_cols=349  Identities=14%  Similarity=0.105  Sum_probs=228.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhh----HHH--HHHHHHHHHHHHHhhhhhhhcccCcchHHHHHH
Q 012315          103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPAT----VGL--IQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGV  176 (466)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~g~--~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~  176 (466)
                      ++.+....++.++.+++...++...|.+.++++.+..+    ++.  ..++..++..+++++.|+++||+|||+++.++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            45667778899999999999999999999998643322    222  257788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhchhH--------HHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhh
Q 012315          177 VWWSIATALTPVAAKLGLPF--------LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLA  248 (466)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~--------l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~  248 (466)
                      ++++++.+++++++  +++.        ++++|+++|++.|..++...+++.|++|+++||++.++...+..+|..+|+.
T Consensus        95 ~l~~i~~~~~a~~~--~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~  172 (490)
T PRK10642         95 VIMSISTFCIGLIP--SYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAG  172 (490)
T ss_pred             HHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999  7764        7889999999999999999999999999999999999999888888888887


Q ss_pred             hHHHhh--------cccCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcC
Q 012315          249 FSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSK  320 (466)
Q Consensus       249 ~~~~l~--------~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (466)
                      +...+.        ..+|||+.|++.+++.++ .++.....||+|+..+..++.++    .+.+..++.++.++++++++
T Consensus       173 ~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  247 (490)
T PRK10642        173 VVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQ----GDREGLQDGPKVSFKEIATK  247 (490)
T ss_pred             HHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhh----hccccccccccCCHHHHHHH
Confidence            665443        257999999987655443 33333445554431100000000    00000011123356666653


Q ss_pred             -hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHhHH--
Q 012315          321 -PPVWA-LIVSHFCHNWGTFILLTWMPTYYNQ-------------------------------------IMQSIGFLG--  359 (466)
Q Consensus       321 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-------------------------------------~~~~~~~~~--  359 (466)
                       ++.+. .....++....++.+..|+|.|+++                                     .....+.+.  
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~  327 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALF  327 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence             22222 2223344556777888899999865                                     111111110  


Q ss_pred             -HHHHHHHHhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-Cc
Q 012315          360 -PAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GS  436 (466)
Q Consensus       360 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~g  436 (466)
                       ....+......++...+++..++.++..+........+..+..| +.|+++.|+.+..+.+++.++|.+.|++.+. .+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~  407 (490)
T PRK10642        328 VLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQN  407 (490)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence             01111111112222233333233333223333344445556666 6999999987777788889999999999886 34


Q ss_pred             chhHHHHHHHHHHHHHHHHHHh
Q 012315          437 WDDVFKVSVGLYLVGTAVWNLF  458 (466)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~  458 (466)
                      +...+++..+..+++.+..++.
T Consensus       408 ~~~~~~~~~~~~~i~~~~~~~~  429 (490)
T PRK10642        408 LMMPAYYLMVVAVIGLITGVTM  429 (490)
T ss_pred             chHHHHHHHHHHHHHHHHHHHh
Confidence            5555555555555555555444

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.97  E-value=4.9e-28  Score=235.23  Aligned_cols=326  Identities=12%  Similarity=0.043  Sum_probs=237.3

Q ss_pred             HHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHH
Q 012315          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP  187 (466)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  187 (466)
                      ...+..+...+......+.+|.+.+++|.+..+.++..+++.+++.+++++.|+++||+|||+++..+.++.+++.+++.
T Consensus        20 ~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~   99 (413)
T PRK15403         20 ALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATL   99 (413)
T ss_pred             HHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence            34444566667778888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHh
Q 012315          188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFG  267 (466)
Q Consensus       188 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~  267 (466)
                      +++  +++.++++|+++|++.+...+....++.|++|++++++++++......+|..+||.+++.+.+..|||+.|++.+
T Consensus       100 ~a~--~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~  177 (413)
T PRK15403        100 FTT--SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIA  177 (413)
T ss_pred             HcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            998  999999999999999887677778889999999999999999999999999999999999998899999999988


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          268 SLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY  347 (466)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (466)
                      ++.++..+..++..||+++++++.... ..            ...++++++|||.+|...+..++.....+.+..+.|.+
T Consensus       178 ~~~~i~~~~~~~~lp~~~~~~~~~~~~-~~------------~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~  244 (413)
T PRK15403        178 VMGLIAFVGLLLAMPETVKRGAVPFSA-KS------------VLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVI  244 (413)
T ss_pred             HHHHHHHHHHHHhCCCCccccCCCCCh-HH------------HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence            887776665555556543221111000 00            01246778999999998888887777777788888888


Q ss_pred             HHH-------------------------------------HH--HHHHhHHHHHHHHHHh---cCCchHHHHHHHHHHhh
Q 012315          348 YNQ-------------------------------------IM--QSIGFLGPAFFLTQLS---HVDSPAMAVLCMACSQG  385 (466)
Q Consensus       348 l~~-------------------------------------~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  385 (466)
                      +++                                     ..  ........+..+....   ..+..+..++...+.+.
T Consensus       245 l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~  324 (413)
T PRK15403        245 LIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAF  324 (413)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence            876                                     00  0000000011111100   12222222333333344


Q ss_pred             hhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHH
Q 012315          386 TDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYL  449 (466)
Q Consensus       386 ~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~  449 (466)
                      +.+...+..........+..+|++.++.+.....+..+++...|++.+. +-...|...+++..
T Consensus       325 G~~~~~p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~  387 (413)
T PRK15403        325 GIGLIFPTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG  387 (413)
T ss_pred             HHHHHhHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence            4444444444332222233579999999999999999999999999887 44455544444433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.97  E-value=4.9e-28  Score=234.13  Aligned_cols=317  Identities=15%  Similarity=0.170  Sum_probs=234.7

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHH
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL  185 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  185 (466)
                      +..+.+..+..........+..|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~   86 (385)
T TIGR00710         7 ALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLG   86 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence            34444445556677778888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHH
Q 012315          186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS  265 (466)
Q Consensus       186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~  265 (466)
                      +.+.+  +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++++.+..||+..|++
T Consensus        87 ~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~  164 (385)
T TIGR00710        87 LALSN--NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF  164 (385)
T ss_pred             HHHHc--cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            99988  9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  345 (466)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (466)
                      .+++.++..+...+..|+.++++++.+..+.              ...+++++++|.++...+...+..........+.|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (385)
T TIGR00710       165 LSLAGILLSALIFFILPETLPYEARIQISTY--------------FETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAP  230 (385)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCcccCCHHHH--------------HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcCh
Confidence            8888777666655555554332221111110              12356778899988877777666666777777778


Q ss_pred             HHHHH-------------------------------------HHHHHHhHHHHHHH---HHHhc-C-CchHHHHHHHHHH
Q 012315          346 TYYNQ-------------------------------------IMQSIGFLGPAFFL---TQLSH-V-DSPAMAVLCMACS  383 (466)
Q Consensus       346 ~~l~~-------------------------------------~~~~~~~~~~~~~~---~~~~~-~-~~~~~~~~~~~~~  383 (466)
                      .++++                                     .....+.....+..   ..... . ...........+.
T Consensus       231 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (385)
T TIGR00710       231 FVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFV  310 (385)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            77764                                     11111111111111   11111 1 1222233333444


Q ss_pred             hhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcch
Q 012315          384 QGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWD  438 (466)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~  438 (466)
                      +.+.+...+.......+..|++++++.++.+.....++.+.+.+.+.+.+..++.
T Consensus       311 g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~  365 (385)
T TIGR00710       311 GIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAWP  365 (385)
T ss_pred             HHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhccccChHH
Confidence            4444555566666666777888999999999988877777777777555444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.97  E-value=1.9e-28  Score=237.24  Aligned_cols=327  Identities=14%  Similarity=0.123  Sum_probs=236.2

Q ss_pred             HHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 012315          111 SAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA  189 (466)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  189 (466)
                      ...++.....+...++++. +.+++|+|..++|++.+...++..+.+++.|+++||+|||+++..+.++.+++.+++.+.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~   96 (400)
T PRK11646         17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA   96 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444555555554 678999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHH
Q 012315          190 AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSL  269 (466)
Q Consensus       190 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~  269 (466)
                      +  +++.+++.|++.|++.+...+...+++.+++|+++|++++|+.+...++|..+||.+++++. .+||++.|++.++.
T Consensus        97 ~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~  173 (400)
T PRK11646         97 H--EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVL  173 (400)
T ss_pred             c--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence            8  89999999999999998888999999999999999999999999999999999999999998 67999999988877


Q ss_pred             HHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          270 GTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYN  349 (466)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  349 (466)
                      .++..+...+..|+.+++ +. .++               .+.++++++++|.++...+..+...........++|.|++
T Consensus       174 ~~~~~i~~~~~~~~~~~~-~~-~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  236 (400)
T PRK11646        174 FVLAAAFNAWLLPAYKLS-TV-RTP---------------VREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVN  236 (400)
T ss_pred             HHHHHHHHHHhCCccccc-cc-chh---------------hHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            766555444444432111 00 000               1124667788888876655554444444445567788877


Q ss_pred             H-------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhhhhh
Q 012315          350 Q-------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQS  392 (466)
Q Consensus       350 ~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (466)
                      +                                     .....++...++....+...++.+.......+.+.+.+...+
T Consensus       237 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p  316 (400)
T PRK11646        237 DIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEP  316 (400)
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHc
Confidence            6                                     011111112222222222333333333333333444444555


Q ss_pred             hhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccC---c-chhHHHHHHHHHHHHHHHHHH
Q 012315          393 GLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHG---S-WDDVFKVSVGLYLVGTAVWNL  457 (466)
Q Consensus       393 ~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~---g-~~~~~~~~~~~~~~~~~~~~~  457 (466)
                      .......+..| +++|+++|+.+....+|..+||.+.|++.|..   + ....|...+.+.+++.+....
T Consensus       317 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (400)
T PRK11646        317 ARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALYW  386 (400)
T ss_pred             cHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHH
Confidence            55666666665 79999999999999999999999999999983   2 345666656666655554443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.97  E-value=3e-28  Score=234.73  Aligned_cols=329  Identities=16%  Similarity=0.103  Sum_probs=239.4

Q ss_pred             HHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHH-HHHHHHHHHHHHHHH
Q 012315          111 SAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG-FGVVWWSIATALTPV  188 (466)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~~  188 (466)
                      +.+++.++......+.+|. +.+++|.|..++|++.+++.+...+.+++.|+++||+||||.++ .+.++..++.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   83 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW   83 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence            3466667777778888887 57889999999999999999999999999999999999988765 456666677778888


Q ss_pred             HhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHH--HHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHH
Q 012315          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS--LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (466)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~  266 (466)
                      ++  +++.+++.|++.|.+.+...+...++..|+.|+++|++.  .++...+.++|.++||.+++++.+.+|||+.|++.
T Consensus        84 ~~--~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~  161 (375)
T TIGR00899        84 NR--NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA  161 (375)
T ss_pred             cc--hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence            88  899999999999888787888888889999887777654  68888889999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (466)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (466)
                      +++.++..+..++..||.++.+++.+  +               +.+.++.+++++++...+..++..........+.|.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (375)
T TIGR00899       162 ALAFVLCGVLVWLFLPSYPRGAPGAL--T---------------RLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPL  224 (375)
T ss_pred             HHHHHHHHHHHHHhCCCcccCccccc--C---------------cchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHH
Confidence            88877766666555665443221100  0               012334566777776655555555545555666777


Q ss_pred             HHHH-------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhh
Q 012315          347 YYNQ-------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAF  389 (466)
Q Consensus       347 ~l~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (466)
                      |+++                                     .....+.+...+........++.+.......+.+++.+.
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  304 (375)
T TIGR00899       225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI  304 (375)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7654                                     111111111122222222223334344344444444455


Q ss_pred             hhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHh
Q 012315          390 SQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  458 (466)
Q Consensus       390 ~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  458 (466)
                      ..+....+..+..|+++++++|+++...++|..++|.+.|.+.|..||+..|.+.+++.+++.++..+.
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       305 LAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             HHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence            556666677778888888999999999999999999999999999999999999888888777766543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09952 shikimate transporter; Provisional

Probab=99.97  E-value=1.8e-27  Score=233.17  Aligned_cols=347  Identities=16%  Similarity=0.159  Sum_probs=235.5

Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhHHhHhh-hhhcc--CCChhhHHHHH-----HHHHHHHHHHHhhhhhhhcccCcchHH
Q 012315          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILP-MSAEF--NWNPATVGLIQ-----SSFFWGYLLTQIAGGIWADTVGGKAVL  172 (466)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~g~~~-----~~~~~~~~~~~~~~g~l~dr~g~r~~~  172 (466)
                      ++++.+....++.++++++...++...|. +.+++  +.++. .+++.     ++..++..+++++.|+++||+|||+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            45567778888999999999999888775 55555  66665 45553     345566788999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhchh--------HHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHH
Q 012315          173 GFGVVWWSIATALTPVAAKLGLP--------FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSV  244 (466)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  244 (466)
                      ..+.++++++.+++++++  +++        .++++|+++|++.|..++....++.|++|+++|++..+..+.+..+|.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~  175 (438)
T PRK09952         98 MLTVWMMGIATALIGLLP--SFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLL  175 (438)
T ss_pred             HHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence            999999999999999998  765        5888999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHhhc--------ccCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhh
Q 012315          245 TGLAFSPFLIH--------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGL  316 (466)
Q Consensus       245 ig~~~~~~l~~--------~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (466)
                      ++..+..++..        .+|||.+|++.++..++. +......||+++.      .+.+.   +.++.+ .+....+.
T Consensus       176 l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~------~~~~~---~~~~~~-~~~~~~~~  244 (438)
T PRK09952        176 LSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEF------EQQQH---EQAAAK-KRIPVIEA  244 (438)
T ss_pred             HHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhH------HHHHh---hccccc-ccCCHHHH
Confidence            99887776542        579999999877654432 2222222332211      00000   000000 01112234


Q ss_pred             hhcChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHhH
Q 012315          317 ILSKPPVWALIV-SHFCHNWGTFILLTWMPTYYNQ-------------------------------------IMQSIGFL  358 (466)
Q Consensus       317 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~-------------------------------------~~~~~~~~  358 (466)
                      ++++++.|...+ ..++.....+...+|.|.|+++                                     .....+.+
T Consensus       245 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~  324 (438)
T PRK09952        245 LLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGAL  324 (438)
T ss_pred             HHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            667777666544 3455556667777888888765                                     11111111


Q ss_pred             HHHHHH--H-H-HhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHH-HHHHHHHHHHHHHHh
Q 012315          359 GPAFFL--T-Q-LSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAG-VLAGVFGTAATGYIL  432 (466)
Q Consensus       359 ~~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~-~~g~~i~~~~~g~l~  432 (466)
                      ...+..  . . ....+..+..+...++.++..+...+..+.+..|..| +.|+++.|+.+..+ .+|+.++|.+.|++.
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~  404 (438)
T PRK09952        325 IGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALV  404 (438)
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111  0 1 1111222232333333344444455666777788777 68899999876665 489999999999998


Q ss_pred             cc--CcchhHHHHHHHHHHHHHHHHHHhcCC
Q 012315          433 QH--GSWDDVFKVSVGLYLVGTAVWNLFSTG  461 (466)
Q Consensus       433 ~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~  461 (466)
                      |.  ++|...+.+.+++.+++.+..+..+.+
T Consensus       405 ~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        405 TYFGGSWHSVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             HhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence            85  358888888888888887777665443

>PRK10504 putative transporter; Provisional

Probab=99.97  E-value=1.5e-27  Score=236.85  Aligned_cols=331  Identities=15%  Similarity=0.160  Sum_probs=241.7

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHH
Q 012315          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (466)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (466)
                      .++.++++.++..++...+.+..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   90 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL   90 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            45666777888888888899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHH
Q 012315          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY  264 (466)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~  264 (466)
                      ++.+.+  +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+...++|..+||.+++++.+..|||+.|.
T Consensus        91 ~~~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~  168 (471)
T PRK10504         91 FCALSG--TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL  168 (471)
T ss_pred             HHHHhC--CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence            888888  899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHH-----------Hhhc--------------------------ccCCC
Q 012315          265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKL-----------IVSS--------------------------CASKE  307 (466)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~--------------------------~~~~~  307 (466)
                      +...+..+..+......|+.+....+.+......           ..+.                          ++...
T Consensus       169 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (471)
T PRK10504        169 INIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNN  248 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8877766666555555454332222111110000           0000                          00111


Q ss_pred             CCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Q 012315          308 PVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ-------------------------------------  350 (466)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------------------------------------  350 (466)
                      ++...+. +++|||.++...+..++..........+.|.|++.                                     
T Consensus       249 ~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~  327 (471)
T PRK10504        249 NRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR  327 (471)
T ss_pred             CCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            1112233 47899999888888888777777777778888774                                     


Q ss_pred             HHHHHHhHHHHHHHHHHhc---CCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHH
Q 012315          351 IMQSIGFLGPAFFLTQLSH---VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTA  426 (466)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~  426 (466)
                      .....+..+.++....+..   ..+.+......++.+.+.+...+.......+..| +.++.++|+.++...+|..+|+.
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~  407 (471)
T PRK10504        328 RVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVT  407 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHH
Confidence            1112222222222111111   1222222222333333334444444455444444 79999999999999999999999


Q ss_pred             HHHHHhccCcch
Q 012315          427 ATGYILQHGSWD  438 (466)
Q Consensus       427 ~~g~l~~~~g~~  438 (466)
                      +.|.+.+..|+.
T Consensus       408 i~g~ll~~~g~~  419 (471)
T PRK10504        408 IAGLLLGLFGQQ  419 (471)
T ss_pred             HHHHHHHHhhhh
Confidence            999998886663

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.97  E-value=2.5e-27  Score=229.74  Aligned_cols=320  Identities=14%  Similarity=0.125  Sum_probs=236.5

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHH
Q 012315          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI  181 (466)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  181 (466)
                      .++.+.+..+..++..+......+.+|.+.+++|.|+.+.+++.+++.++..+++++.|+++||+|||+.+.++.++..+
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~   85 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL   85 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence            45556666666666667777888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchH
Q 012315          182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS  261 (466)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~  261 (466)
                      +.+++.+.+  +++.+++.|++.|++.+...+....+..|.++++++++++++.+.+..+|..++|.+++++.+..|||+
T Consensus        86 ~~~~~~~~~--~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~  163 (394)
T PRK11652         86 GTLVALFAH--SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRA  163 (394)
T ss_pred             HHHHHHHHc--cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHH
Confidence            999988888  999999999999999888888888899999998999999999999999999999999999999899999


Q ss_pred             HHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHH
Q 012315          262 VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL  341 (466)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (466)
                      .|++.++..++..+...+..||+++.+++.  .+              ....+++++++|.+|...+..+........+.
T Consensus       164 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (394)
T PRK11652        164 CYLFLLLLGAGVTFSMARWMPETRPADARR--TR--------------VLASYRTLLSNRRFNCYLLMLIGTLAGIAVFE  227 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCccccch--hH--------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            999988777665555555555543222111  11              01245677888887765555444444444444


Q ss_pred             HHHHHHHHH--------------------------------H------HHHHHhHHHHHHHHHHh--cCCchHHHHHHHH
Q 012315          342 TWMPTYYNQ--------------------------------I------MQSIGFLGPAFFLTQLS--HVDSPAMAVLCMA  381 (466)
Q Consensus       342 ~~~~~~l~~--------------------------------~------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  381 (466)
                      .+.+.++++                                .      ..........+......  ...+.+.......
T Consensus       228 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (394)
T PRK11652        228 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAA  307 (394)
T ss_pred             HhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            444555544                                0      00011111111111111  1123344444445


Q ss_pred             HHhhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchh
Q 012315          382 CSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDD  439 (466)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~  439 (466)
                      +.+.+.+...+.......+..|+++|++.++.+....+|+.+++.+.|.+.+...+..
T Consensus       308 ~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~  365 (394)
T PRK11652        308 LFFFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFSL  365 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccCCchHHH
Confidence            5555556667777777777778899999999999999999999999999877654443

>PRK10054 putative transporter; Provisional

Probab=99.97  E-value=1e-27  Score=231.70  Aligned_cols=329  Identities=12%  Similarity=0.096  Sum_probs=238.8

Q ss_pred             HHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHH
Q 012315          108 LCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (466)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  186 (466)
                      .+.+..++.........+.+|. +.+++|++..++|++.+++.++..+++++.|+++||+|||+++.++.++.+++.++.
T Consensus        11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~   90 (395)
T PRK10054         11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAI   90 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH
Confidence            4444555556666676666665 667899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHH
Q 012315          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (466)
Q Consensus       187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~  266 (466)
                      .+.+  +++.+++++.+.|.+.+...+...++..|.+|+++|++++|+.+...++|.++||.+++++.+ .||+..|++.
T Consensus        91 ~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~  167 (395)
T PRK10054         91 PLVN--NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLA  167 (395)
T ss_pred             HHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHH
Confidence            8988  888888889888888777788899999999999999999999999999999999999998875 7999999988


Q ss_pred             hHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (466)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (466)
                      +++.++..+...+..++.++++++.++  .              ..+.++.+|+|.++...+..++..+.......+.+.
T Consensus       168 ~~~~~i~~i~~~~~~~~~~~~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  231 (395)
T PRK10054        168 AICSAFPLVFIQIWVQRSEKAIATETG--S--------------VWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQ  231 (395)
T ss_pred             HHHHHHHHHHHHHHHhccccccccchh--h--------------hhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHH
Confidence            877776655544444433221111000  0              011256788898887777777666665555555555


Q ss_pred             HHHH---------------------------------------HHHHHHhHHHHHHHHHHhc-CCchHHHHHHHHHHhhh
Q 012315          347 YYNQ---------------------------------------IMQSIGFLGPAFFLTQLSH-VDSPAMAVLCMACSQGT  386 (466)
Q Consensus       347 ~l~~---------------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  386 (466)
                      |+..                                       .....++....+.+..... .++.+...+...+.+.+
T Consensus       232 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  311 (395)
T PRK10054        232 YVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVG  311 (395)
T ss_pred             HHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHH
Confidence            5532                                       2222233323333322222 23344344444444555


Q ss_pred             hhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHH
Q 012315          387 DAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN  456 (466)
Q Consensus       387 ~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  456 (466)
                      .....+.......+..| +.++++.+..+ ...+|..+||.++|.+.|+.|+...|++.+.+..++.++..
T Consensus       312 ~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        312 EIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            55555666666666666 58899988765 67799999999999999999998888887666665554444

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.97  E-value=3.1e-28  Score=237.82  Aligned_cols=330  Identities=15%  Similarity=0.082  Sum_probs=237.4

Q ss_pred             HHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHH---
Q 012315          112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV---  188 (466)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---  188 (466)
                      ..++..+......+.+|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++..+   
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~  104 (417)
T PRK10489         25 ARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAF  104 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHH
Confidence            34455556667778889988999999999999999999999999999999999999999999988887777665543   


Q ss_pred             HhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhH
Q 012315          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS  268 (466)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~  268 (466)
                      ....+++.+++.|++.|++.+...+...+++.+++|+++|+++.++.+...++|..+||.+++.+.+..||++.|++.++
T Consensus       105 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~  184 (417)
T PRK10489        105 LPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAA  184 (417)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            11226788889999999998888888899999999999999999999999999999999999999998899999988777


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          269 LGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY  348 (466)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  348 (466)
                      ..++..+... ..|+.++++++.++. .+           +....++.++++|.++...+..++... ......++|.|+
T Consensus       185 ~~~~~~~~~~-~l~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~  250 (417)
T PRK10489        185 GTFITLLPLL-RLPALPPPPQPREHP-LR-----------SLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALA  250 (417)
T ss_pred             HHHHHHHHHH-hCCCCCCCCcccccc-hH-----------HHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHH
Confidence            6665554433 334332211110000 00           001235567788887666555444332 345677788887


Q ss_pred             HH-------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhhhh
Q 012315          349 NQ-------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQ  391 (466)
Q Consensus       349 ~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (466)
                      ++                                     .....+.++.++.+..+...++.+...++.++.+.+.+...
T Consensus       251 ~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  330 (417)
T PRK10489        251 DEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISS  330 (417)
T ss_pred             HhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            76                                     12222222333333333334444444444444444444445


Q ss_pred             hhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHH
Q 012315          392 SGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVW  455 (466)
Q Consensus       392 ~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  455 (466)
                      +...++..+..| +.||+++|+++....+|..++|.+.|.+.|..|+...+...+++.++..++.
T Consensus       331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~  395 (417)
T PRK10489        331 LLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLL  395 (417)
T ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence            555667777766 5899999999999999999999999999999888888877666555544443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.97  E-value=4.5e-28  Score=232.53  Aligned_cols=319  Identities=13%  Similarity=0.066  Sum_probs=239.0

Q ss_pred             HHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHH
Q 012315          109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV  188 (466)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  188 (466)
                      .....++..+......+.+|.+..+++.+..++|++.+++.++..+++++.|+++||+|||+++..+.++..++.++..+
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            34556666777778888889999999999999999999999999999999999999999999999999988888877766


Q ss_pred             Hhh---hchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHH
Q 012315          189 AAK---LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS  265 (466)
Q Consensus       189 ~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~  265 (466)
                      ...   .+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|.++||.+++++.+..||++.|++
T Consensus        84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~  163 (365)
T TIGR00900        84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV  163 (365)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            542   26888999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHH-HHH
Q 012315          266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL-TWM  344 (466)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  344 (466)
                      .++..++..+......+++++++++.+.+++. .        ++....++.++++|.++...+..++......... .+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (365)
T TIGR00900       164 DAVGFAISALLIVSVRIPELAASEIQALSNAV-L--------RDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALF  234 (365)
T ss_pred             HHHHHHHHHHHHHhcccccCCCccccccchhH-H--------HHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77766655444433322222111111100000 0        0011245677889999888877777777766665 777


Q ss_pred             HHHHHH-------------------------------------HHHHHHhHHHHHHHHHHhcCC-chHHHHHHHHHHhhh
Q 012315          345 PTYYNQ-------------------------------------IMQSIGFLGPAFFLTQLSHVD-SPAMAVLCMACSQGT  386 (466)
Q Consensus       345 ~~~l~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  386 (466)
                      |.|.++                                     .....+....++........+ +.+...+..++.+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  314 (365)
T TIGR00900       235 PYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVG  314 (365)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Confidence            887765                                     122222222333333333333 245555555565666


Q ss_pred             hhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 012315          387 DAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS  436 (466)
Q Consensus       387 ~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g  436 (466)
                      .+...+....+..+..| ++|+++.|+.+....++..++|.+.|.+.|..|
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       315 YGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            66666777777777665 689999999999999999999999999998643

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.97  E-value=2.9e-27  Score=228.09  Aligned_cols=328  Identities=14%  Similarity=0.072  Sum_probs=234.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHH
Q 012315          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (466)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (466)
                      .+....++.++.........+.+|.+.+++|.|..++|++.+.+.++..+++++.|+++||+|||+.+..+.++.+++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~   86 (381)
T PRK03633          7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCA   86 (381)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666677778888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHH
Q 012315          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY  264 (466)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~  264 (466)
                      ++++++  +++.+++.|++.|++.+...+...+.+.+..++++|++++++++.+.++|..+||.+++.+.+...|...+.
T Consensus        87 ~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  164 (381)
T PRK03633         87 GLGLMV--GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV  164 (381)
T ss_pred             HHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH
Confidence            999988  999999999999999998888888888889989999999999999999999999999999877543333332


Q ss_pred             HHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 012315          265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM  344 (466)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (466)
                       .+........+ .+. +.+++..++ +                 +..+.++.+++|.++......+.....+....+++
T Consensus       165 -~~~~~~~~~~~-~~~-~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  223 (381)
T PRK03633        165 -TGLVLAAILPL-LFT-RILNQQAEN-H-----------------DSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLM  223 (381)
T ss_pred             -HHHHHHHHHHH-HHh-cccCCCCCC-C-----------------CCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence             22222221111 121 111111000 0                 01134567788887765554555555566677888


Q ss_pred             HHHHHH------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhh
Q 012315          345 PTYYNQ------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDA  388 (466)
Q Consensus       345 ~~~l~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (466)
                      |.|+++                                    .....+.....+......  ..... .....+.+....
T Consensus       224 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~~~~-~~~~~l~g~~~~  300 (381)
T PRK03633        224 PLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQAAM-APALFILGAAGF  300 (381)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hhHHH-HHHHHHHHHHHH
Confidence            988876                                    111111111111111111  11111 112222222233


Q ss_pred             hhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHh
Q 012315          389 FSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  458 (466)
Q Consensus       389 ~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  458 (466)
                      ...+.......+..| ++++...+..+...++|+.++|.+.|++.|+.|+...|.+.+.+.++..+..+..
T Consensus       301 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        301 TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence            345556665556555 5777788888888999999999999999999999999998888777665544444

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.97  E-value=2.1e-28  Score=243.56  Aligned_cols=357  Identities=20%  Similarity=0.204  Sum_probs=235.4

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCC--------hhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHH
Q 012315          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWN--------PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG  173 (466)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~  173 (466)
                      .+....++.++.++..++........+.+.++++.+        ..+.+++.+++.++..++++++|+++||+|||++++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~  105 (481)
T TIGR00879        26 VALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLL  105 (481)
T ss_pred             HHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHH
Confidence            344444455566677778888888888888887777        899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh-hhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhH--
Q 012315          174 FGVVWWSIATALTPVAA-KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS--  250 (466)
Q Consensus       174 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~--  250 (466)
                      ++.++..++.+++.+.. ..+++.+++.|++.|++.+...+...+++.|++|+++|++++++++.+..+|..+++.++  
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~  185 (481)
T TIGR00879       106 IIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSG  185 (481)
T ss_pred             HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999998886654 124568999999999999999999999999999999999999999999999999999999  


Q ss_pred             -HHhhcccCchHHHHHHhHHHHHHHHHHhhhcccCCCCC--CCCChHHHHHHhhcccCC--------------------C
Q 012315          251 -PFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED--PQLRPAEKKLIVSSCASK--------------------E  307 (466)
Q Consensus       251 -~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--------------------~  307 (466)
                       +...+..+||+.|++.++..++..+ ..++.++.+...  ++..+...+...+..+.+                    .
T Consensus       186 ~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (481)
T TIGR00879       186 KVSLNNTLGWRIPLGLQLIPAGLLFL-GLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEK  264 (481)
T ss_pred             hhcCCCCccHHHHHHHHHHHHHHHHH-HHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHH
Confidence             6766778999999986655554443 344455544210  011111000000000000                    0


Q ss_pred             CCCCcchhhhhc------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Q 012315          308 PVKTIPWGLILS------KPPVWALIVSHFCHNWGTFILLTWMPTYYNQ-------------------------------  350 (466)
Q Consensus       308 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------------------------------  350 (466)
                      +..+..+++.++      .+.++...+..+...........+.|.++++                               
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  344 (481)
T TIGR00879       265 RSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVD  344 (481)
T ss_pred             hhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000111223332      1222222233332222233344555555544                               


Q ss_pred             -----HHHHHHhHHHHHHHHHHh-----cCC------chHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHH
Q 012315          351 -----IMQSIGFLGPAFFLTQLS-----HVD------SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLS  413 (466)
Q Consensus       351 -----~~~~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~  413 (466)
                           .....++++.++......     ..+      .........++..+......+....+..+..| +.|+++.|+.
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  424 (481)
T TIGR00879       345 RFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIA  424 (481)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHH
Confidence                 111222222222222211     111      12222222222233333334555566677777 5899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHhc
Q 012315          414 NTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFS  459 (466)
Q Consensus       414 ~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  459 (466)
                      +...++|++++|.+.|.+.++.||...|++.+++.+++.++..++.
T Consensus       425 ~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~  470 (481)
T TIGR00879       425 VAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFL  470 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheec
Confidence            9999999999999999999998999999888888877777665543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11043 putative transporter; Provisional

Probab=99.97  E-value=8e-27  Score=226.82  Aligned_cols=313  Identities=15%  Similarity=0.135  Sum_probs=231.3

Q ss_pred             HHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 012315          110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA  189 (466)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  189 (466)
                      .+...+..+....+.+..|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+.+..+.++..++.+++.+.
T Consensus        12 ~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   91 (401)
T PRK11043         12 AGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV   91 (401)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh
Confidence            33344455667778888899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHH
Q 012315          190 AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSL  269 (466)
Q Consensus       190 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~  269 (466)
                      +  +++.+++.|++.|++.+...+...+++.|++|++++++..+.......+|..++|.+++++.+.+|||+.|++.+++
T Consensus        92 ~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~  169 (401)
T PRK11043         92 E--SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAI  169 (401)
T ss_pred             c--CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            8  99999999999999988878888899999999999999999999999999999999999999999999999988887


Q ss_pred             HHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          270 GTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYN  349 (466)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  349 (466)
                      .++..+..++..++++ +++  +++               ++.++++++++|.++...+...+..........+.|.+++
T Consensus       170 ~~~~~~~~~~~~~~~~-~~~--~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  231 (401)
T PRK11043        170 TLLLILPTLRLKPSKK-ARK--QSQ---------------DALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILE  231 (401)
T ss_pred             HHHHHHHHHHcCCCCC-ccc--cch---------------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            7776655544433222 111  000               0124667888888876666655555566666777787776


Q ss_pred             H------------------------------------H---HHHHHhHHHHHHHHHHh--cCCchHHHHHHHHHHhhhhh
Q 012315          350 Q------------------------------------I---MQSIGFLGPAFFLTQLS--HVDSPAMAVLCMACSQGTDA  388 (466)
Q Consensus       350 ~------------------------------------~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  388 (466)
                      +                                    .   .......+..+.+....  ..++.+..+....+.++..+
T Consensus       232 ~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (401)
T PRK11043        232 QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANG  311 (401)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence            5                                    0   00011111111111111  12233333333344444445


Q ss_pred             hhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHH
Q 012315          389 FSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFK  442 (466)
Q Consensus       389 ~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~  442 (466)
                      ...+.......+..|+++|++.|+.+.....++.+++.+.|.+.|.......+.
T Consensus       312 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~  365 (401)
T PRK11043        312 AIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALISTPLLTTGSV  365 (401)
T ss_pred             HHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHHH
Confidence            555655555556667899999999999999999999999999988655544433

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=4.5e-27  Score=229.64  Aligned_cols=333  Identities=14%  Similarity=0.152  Sum_probs=241.2

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHH
Q 012315          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI  181 (466)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  181 (466)
                      ....+....+.++..++......+..|.+++++|+|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+.+++++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~  103 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL  103 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            45566777778888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH---HHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc-c-
Q 012315          182 ATALT---PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-R-  256 (466)
Q Consensus       182 ~~~~~---~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~-~-  256 (466)
                      +.+++   .+++  +++.++++|+++|+|.+...+..++++.++.|+++|+..+++.+..+.+|..+++.+++.+.. . 
T Consensus       104 ~~~l~~~~~~a~--~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~  181 (438)
T PRK10133        104 GAALFWPAAEIM--NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_pred             HHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99875   3466  899999999999999999999999999998777777778999999999999999999876541 0 


Q ss_pred             ------------------------cCchHHHHHHhHHHHHHHHHH-hhhcccCCCCCCCCChHHHHHHhhcccCCCCCCC
Q 012315          257 ------------------------FGWPSVFYSFGSLGTVWFTVW-LSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKT  311 (466)
Q Consensus       257 ------------------------~gw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (466)
                                              .+||++|+....+..+..++. ....|+.+.+++.  + +          +.....
T Consensus       182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~--~-~----------~~~~~~  248 (438)
T PRK10133        182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS--D-A----------KQGSFS  248 (438)
T ss_pred             cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc--c-c----------cccchh
Confidence                                    246666654333333222222 2222321111000  0 0          000011


Q ss_pred             cchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-------------------------------------HHH
Q 012315          312 IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY-NQ-------------------------------------IMQ  353 (466)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~-------------------------------------~~~  353 (466)
                      ..+++++++|.++...+..++....+.+...|.+.|+ ++                                     ...
T Consensus       249 ~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l  328 (438)
T PRK10133        249 ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL  328 (438)
T ss_pred             hhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            2356788999988877777888888888888888885 43                                     122


Q ss_pred             HHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012315          354 SIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ  433 (466)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  433 (466)
                      ..+..+....+......++. ..+..+.+.+++.+...|..++...+..+++.+.+.++.. +..+|+.++|++.|.+.|
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~-~~~~g~~~~~~i~G~l~~  406 (438)
T PRK10133        329 AAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSD  406 (438)
T ss_pred             HHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhccchhHHh-HHhccchHHHHHHHHHHH
Confidence            22222222222222222222 2244455667777888888888888888887888888886 456789999999999999


Q ss_pred             cCc-chhHHHHHHHHHHHH
Q 012315          434 HGS-WDDVFKVSVGLYLVG  451 (466)
Q Consensus       434 ~~g-~~~~~~~~~~~~~~~  451 (466)
                      ..| .+..|++...+.+..
T Consensus       407 ~~g~~~~~~~v~~~~~~~~  425 (438)
T PRK10133        407 AAGNIPTAELIPALCFAVI  425 (438)
T ss_pred             hccchHHHHHHHHHHHHHH
Confidence            877 677777655544433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.97  E-value=4.7e-27  Score=227.49  Aligned_cols=328  Identities=15%  Similarity=0.137  Sum_probs=242.6

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHH
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL  185 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  185 (466)
                      +..++..++..++.....++..|.+++++|++..+.|++.+.+.+++.+++++.|++.||+|||+.+.++.++++++.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            55667778888888888899999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHh-hhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc--------
Q 012315          186 TPVAA-KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--------  256 (466)
Q Consensus       186 ~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~--------  256 (466)
                      +..+. ..+++.+++.|++.|+|.+...+..++++.+..|+++|++.+++.+...++|..++|.+++.+...        
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            65432 127899999999999999999999999999999999999999999999999999999999877532        


Q ss_pred             ------------------cCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhh
Q 012315          257 ------------------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLIL  318 (466)
Q Consensus       257 ------------------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (466)
                                        .+||++|++.+++.++..++..+. +. |+.+++.+  ++           .....+.++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~-~~-p~~~~~~~--~~-----------~~~~~~~~~~~  229 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLT-KM-PALNHSDA--KQ-----------ISFSASLSRLA  229 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CCCCcccc--cc-----------ccchhhHHHHH
Confidence                              369999998888777655444322 21 11111000  00           00111345678


Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------HHHHHHhHHH
Q 012315          319 SKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ--------------------------------------IMQSIGFLGP  360 (466)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------------------------------~~~~~~~~~~  360 (466)
                      |+|.++...+..+++...+....++++.|+++                                      ....+..++.
T Consensus       230 ~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~  309 (410)
T TIGR00885       230 RIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIG  309 (410)
T ss_pred             hChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            99999988888888888888888999998764                                      1222222223


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccC-----
Q 012315          361 AFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG-----  435 (466)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~-----  435 (466)
                      .+..+.....++... ..++.+.+++.+..+|..++...+..+++...+.+...+ ..+|+++.|++.|++.|..     
T Consensus       310 ~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~~~Gga~~p~l~G~~~d~~~~~~~  387 (410)
T TIGR00885       310 MALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-AIIGGGIVPPLQGFIIDMKEIAAA  387 (410)
T ss_pred             HHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-HHhccchHHHHHHHHHHHhccccc
Confidence            333333333333333 344444445555666888888877777655444443333 3499999999999999953     


Q ss_pred             -cchhHHHHHHHHHHH
Q 012315          436 -SWDDVFKVSVGLYLV  450 (466)
Q Consensus       436 -g~~~~~~~~~~~~~~  450 (466)
                       +++..|++-..+.+.
T Consensus       388 ~~~~~~~~~~~~~~~~  403 (410)
T TIGR00885       388 PAVNTSFILPLLCFAV  403 (410)
T ss_pred             CccchHHHHHHHHHHH
Confidence             577788765555443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.96  E-value=2.1e-27  Score=237.54  Aligned_cols=167  Identities=18%  Similarity=0.326  Sum_probs=157.0

Q ss_pred             CchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHH
Q 012315          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (466)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (466)
                      +++|+.+..+++..++..++.....+..|.+.+++|++..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   95 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF   95 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            45677888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCc
Q 012315          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (466)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw  259 (466)
                      +++.++..+.+  +++.+++.|++.|++.+..++....++.|++|+++|++++++...+..+|..++|.+.+++.+.+||
T Consensus        96 ~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w  173 (496)
T PRK03893         96 SVGTLACGFAP--GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW  173 (496)
T ss_pred             HHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            99999999988  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhH
Q 012315          260 PSVFYSFGS  268 (466)
Q Consensus       260 ~~~~~~~~~  268 (466)
                      |+.|++.++
T Consensus       174 ~~~f~~~~~  182 (496)
T PRK03893        174 RALFFIGIL  182 (496)
T ss_pred             HHHHHHHHH
Confidence            999986443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.96  E-value=4.2e-27  Score=234.33  Aligned_cols=186  Identities=17%  Similarity=0.249  Sum_probs=157.5

Q ss_pred             CchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhcc--------CCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchH
Q 012315          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEF--------NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV  171 (466)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  171 (466)
                      +..++..+...++.+..+++...+++..|.+.+++        +.+..+.+++.+++.++..++++++|+++||+|||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~   87 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            34566677777888999999999998888888876        8899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh----------hhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHh
Q 012315          172 LGFGVVWWSIATALTPVAA----------KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL  241 (466)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  241 (466)
                      +.++.++.+++.+++++..          ...++.++++|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus        88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~  167 (479)
T PRK10077         88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF  167 (479)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence            9999999998888777631          013567789999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHhh--------cccCchHHHHHHhHHHHHHHHHHhhhcccCCC
Q 012315          242 GSVTGLAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPA  286 (466)
Q Consensus       242 g~~ig~~~~~~l~--------~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (466)
                      |.++++.+++.+.        +.+|||+.|++.++..++..+. .++.||+|+
T Consensus       168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~  219 (479)
T PRK10077        168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPR  219 (479)
T ss_pred             HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcH
Confidence            9999988776553        3578999999887777665544 445666653

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.96  E-value=3.3e-28  Score=232.32  Aligned_cols=307  Identities=26%  Similarity=0.453  Sum_probs=226.4

Q ss_pred             HHHHHHhhhhhhhhHHhHh-hhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHH
Q 012315          110 FSAFLLCNMDRVNMSIAIL-PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV  188 (466)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  188 (466)
                      +++.++..+......+..| .+.+++|.+..+++++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..+
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence            4566777778888888999 899999999999999999999999999999999999999999999999999999666666


Q ss_pred             HhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhH
Q 012315          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS  268 (466)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~  268 (466)
                      ++  +.+.+++.|++.|++.+...+...+++.|++|+++|++++++.+...++|.+++|.+++++.+.+|||+.|++.++
T Consensus        82 ~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~  159 (352)
T PF07690_consen   82 AS--NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAI  159 (352)
T ss_dssp             HC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred             hh--hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccc
Confidence            66  8889999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCc-chhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          269 LGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTI-PWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY  347 (466)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (466)
                      +.++..++...+.++++++++..++.+.+       +++++... .++.+.+++.+|...+..++..+.......++|.|
T Consensus       160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (352)
T PF07690_consen  160 LSLIAAILFILFLPEPPPPRERESPKESE-------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLY  232 (352)
T ss_dssp             HHHHHHHHHHCCC---STTTT--SSTTTT---------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHhhhhhhcccccccccccccc-------cccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchh
Confidence            98887765444444433332222211110       00000111 26677788877755566666666777788888887


Q ss_pred             HHH--------------------------------------HHHHHHhHHHHHHHHHH---hcCCchHHHHHHHHHHhhh
Q 012315          348 YNQ--------------------------------------IMQSIGFLGPAFFLTQL---SHVDSPAMAVLCMACSQGT  386 (466)
Q Consensus       348 l~~--------------------------------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  386 (466)
                      +.+                                      ...........+....+   ....+........++.+.+
T Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  312 (352)
T PF07690_consen  233 LQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFG  312 (352)
T ss_dssp             CCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHH
T ss_pred             hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            433                                      00011111111111111   1112233344444555556


Q ss_pred             hhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHH
Q 012315          387 DAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGT  425 (466)
Q Consensus       387 ~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~  425 (466)
                      .+...+.......+..| +++|++.|+.+...++|+.++|
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  313 FGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            66677777788777776 7999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.96  E-value=3.8e-27  Score=235.13  Aligned_cols=328  Identities=15%  Similarity=0.144  Sum_probs=245.8

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHH
Q 012315          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (466)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (466)
                      .+..++++.++..++.....+.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            45667778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHH
Q 012315          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY  264 (466)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~  264 (466)
                      ++++++  +++.+++.|+++|++.+...+...+++.|++|+++|+++++++.....+|..+||.+++++.+++|||+.|+
T Consensus        83 ~~~~~~--~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~  160 (485)
T TIGR00711        83 LCGVAP--NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL  160 (485)
T ss_pred             HHhCcC--CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence            999998  999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHhhhcccCCCCCCCCChHHHH------------HHhhccc--------------------------CC
Q 012315          265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKK------------LIVSSCA--------------------------SK  306 (466)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~--------------------------~~  306 (466)
                      +.+.+.++..+...+..|++++++++..+....            ...+..+                          +.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (485)
T TIGR00711       161 INVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWEL  240 (485)
T ss_pred             hhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            988877776665555555433322111110000            0000000                          00


Q ss_pred             CCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------
Q 012315          307 EPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ------------------------------------  350 (466)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------------------------------  350 (466)
                      +++++..-.+++++|.++...+..++..+..+....++|.|+++                                    
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~  320 (485)
T TIGR00711       241 TDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDP  320 (485)
T ss_pred             cCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            00111112357788988888888888888888888899999876                                    


Q ss_pred             -HHHHHHhHHHHHHHHHHh----cCCchHHHHHHHHHHhhhhhhhhhhhhhh-hcccCccchhhHHHHHHHHHHHHHHHH
Q 012315          351 -IMQSIGFLGPAFFLTQLS----HVDSPAMAVLCMACSQGTDAFSQSGLYSN-HQDIAPRYSGVLLGLSNTAGVLAGVFG  424 (466)
Q Consensus       351 -~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~g~~~g~~~~~~~~g~~i~  424 (466)
                       .....+....++......    ...+.+......++.+++.+...+..... .....+++++++.|+.+....+|+.+|
T Consensus       321 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig  400 (485)
T TIGR00711       321 RKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIG  400 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHH
Confidence             222222222232222222    11223333333444444444444333333 444445799999999999999999999


Q ss_pred             HHHHHHHhcc
Q 012315          425 TAATGYILQH  434 (466)
Q Consensus       425 ~~~~g~l~~~  434 (466)
                      +.+.|.+.++
T Consensus       401 ~~i~g~~~~~  410 (485)
T TIGR00711       401 TALITTILTN  410 (485)
T ss_pred             HHHHHHHHHH
Confidence            9999999874

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00895 2A0115 benzoate transport

Probab=99.96  E-value=1.9e-27  Score=230.97  Aligned_cols=330  Identities=25%  Similarity=0.373  Sum_probs=238.3

Q ss_pred             CchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHH
Q 012315          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (466)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (466)
                      +++|+.+..+.+..+..+++........|.+.+++|.+..+.+++.++..++..++.++.|+++||+|||+.+..+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~   92 (398)
T TIGR00895        13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF   92 (398)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence            34666777777778888888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCc
Q 012315          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (466)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw  259 (466)
                      +++.++..+.+  +++.+++.+++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++++.+..||
T Consensus        93 ~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~  170 (398)
T TIGR00895        93 SVFTLLCALAT--NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW  170 (398)
T ss_pred             HHHHHHHHHcc--chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence            99999988888  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHH----Hhhc--------ccCCC---CCCCcchhhhhcC---h
Q 012315          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKL----IVSS--------CASKE---PVKTIPWGLILSK---P  321 (466)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--------~~~~~---~~~~~~~~~~~~~---~  321 (466)
                      +..|++.+++.++..++.....|+.++...+.++++..+    ...+        .++++   +..+..++.++++   +
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (398)
T TIGR00895       171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTAR  250 (398)
T ss_pred             eeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHH
Confidence            999998876666666655555565543211111111000    0000        00000   0011112223332   2


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------H-HHHHHhHHHHHHHH
Q 012315          322 PVWALIVSHFCHNWGTFILLTWMPTYYNQ-----------------------------------I-MQSIGFLGPAFFLT  365 (466)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------------------------------~-~~~~~~~~~~~~~~  365 (466)
                      ..+.+.+..++..........+.|.+..+                                   . ..............
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  330 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVL  330 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            33444444555556666677777755544                                   1 11111111111111


Q ss_pred             HHhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          366 QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYI  431 (466)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l  431 (466)
                      ......+.+......++.+.+.+...+....+..+..| ++|+++.|+.+....+|..++|.+.|++
T Consensus       331 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       331 VGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            11123344444555555556666667777777788777 6999999999999999999999999986

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.96  E-value=1.3e-26  Score=223.39  Aligned_cols=327  Identities=11%  Similarity=-0.020  Sum_probs=243.8

Q ss_pred             HHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHH-HHHHHH-HHH
Q 012315          109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVV-WWSIAT-ALT  186 (466)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~-~~~~~~-~~~  186 (466)
                      +.+.++..+.......|++|.+.+++|.|..++|++.+++.+...++++++|+++||+||+........ ...+.. ..+
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~   88 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS   88 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            445566666777888899999999999999999999999999999999999999999998543322211 111111 233


Q ss_pred             HHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHH
Q 012315          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (466)
Q Consensus       187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~  266 (466)
                      .+++  +++.+++.|+++|.+.+...+...++..++  +++|++++|......++|.+++|++++++.+.+|||..|.+.
T Consensus        89 ~~~~--~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~  164 (382)
T TIGR00902        89 AGAH--NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL  164 (382)
T ss_pred             Hhhh--hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence            3556  899999999999998888888888887665  478899999999999999999999999999999999999887


Q ss_pred             hHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (466)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (466)
                      ++..++. +......++.++++++ +++            ++....++++++|+|++|...+..++.......+.++.|.
T Consensus       165 ~~~~~~~-~~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~  230 (382)
T TIGR00902       165 TAGLAFM-LIGFLIKPTIPPKDAI-PED------------ESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAI  230 (382)
T ss_pred             HHHHHHH-HHHHHcCCCCCCCccc-ccc------------ccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6553332 2222333321111110 000            0011224678899999999999888888889899999999


Q ss_pred             HHHH------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhhh
Q 012315          347 YYNQ------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFS  390 (466)
Q Consensus       347 ~l~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (466)
                      |+++                                    .....+.+...+........++.+.++....+-+...+..
T Consensus       231 ~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~  310 (382)
T TIGR00902       231 YWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVC  310 (382)
T ss_pred             HHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence            9988                                    3344555555555555566667777777777777777777


Q ss_pred             hhhhhhhhcccCccchhhHHHHHHH-HHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Q 012315          391 QSGLYSNHQDIAPRYSGVLLGLSNT-AGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAV  454 (466)
Q Consensus       391 ~~~~~~~~~~~~p~~~g~~~g~~~~-~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  454 (466)
                      .+....+..+.+++++++.+++++. ...+|..++|.++|++.|+.|+ ..|.+.+++.+++.++
T Consensus       311 ~~~~~~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       311 HLAAMRYIAAQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            7777777777744688999999874 5689999999999999999886 6677777777765444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.96  E-value=1.1e-26  Score=231.78  Aligned_cols=363  Identities=16%  Similarity=0.155  Sum_probs=235.8

Q ss_pred             CCchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhc-----cCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHH
Q 012315           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAE-----FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG  173 (466)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~  173 (466)
                      .+.++..+.++.++.+..+++....+...|.+.++     .+.+..+.+++.+...++..+++++.|+++||+|||+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~   90 (502)
T TIGR00887        11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG   90 (502)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            34567778888888999999999999888887664     2455677899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhc------hhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHh
Q 012315          174 FGVVWWSIATALTPVAAKLG------LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGL  247 (466)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~  247 (466)
                      ++.++..++.+++++++  +      ++.++++|++.|++.|...+....++.|++|+++|++++++.+....+|..+++
T Consensus        91 ~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~  168 (502)
T TIGR00887        91 MELIIMIIATVASGLSP--GSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA  168 (502)
T ss_pred             HHHHHHHHHHHHHHHcc--CcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888876  4      678999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhc-----------------------ccCchHHHHHHhHHHHHHHHHHhhhcccCCCC---CCCCChHHHHHHh-
Q 012315          248 AFSPFLIH-----------------------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE---DPQLRPAEKKLIV-  300 (466)
Q Consensus       248 ~~~~~l~~-----------------------~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-  300 (466)
                      .++.++..                       .++||+.|.+.++..++.. +..++.||+|+.   +.+.+++..+... 
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~-~~~~~lpESpr~l~~~~~~~~~a~~~~~~  247 (502)
T TIGR00887       169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLAL-YFRLTIPETPRYTADVAKDVEQAASDMSA  247 (502)
T ss_pred             HHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHhCcchHHHHHHHHH
Confidence            88876532                       2479999987766655543 444567887762   1111111111000 


Q ss_pred             --h-c----ccC------CCCCCCcchhhhhcC---hhHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----------
Q 012315          301 --S-S----CAS------KEPVKTIPWGLILSK---PPVWAL----IVSHFCHNWGTFILLTWMPTYYNQ----------  350 (466)
Q Consensus       301 --~-~----~~~------~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~----------  350 (466)
                        . +    .++      +++..+.++++++++   ++.+..    ....++..+.+++...+.|.++++          
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~  327 (502)
T TIGR00887       248 VLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATN  327 (502)
T ss_pred             HhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccch
Confidence              0 0    000      000111356777653   222111    112222233333333333333221          


Q ss_pred             --------------------------------------HHHHHHhHHHHHHHHHHhc----CCchHHHHHHHHHHhhhhh
Q 012315          351 --------------------------------------IMQSIGFLGPAFFLTQLSH----VDSPAMAVLCMACSQGTDA  388 (466)
Q Consensus       351 --------------------------------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  388 (466)
                                                            .....+..+.++....+..    ...............++..
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  407 (502)
T TIGR00887       328 NAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANF  407 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence                                                  1111111111111111110    0111111111111111122


Q ss_pred             hhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcc----------CcchhHHHHHHHHHHHHHHHHHH
Q 012315          389 FSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH----------GSWDDVFKVSVGLYLVGTAVWNL  457 (466)
Q Consensus       389 ~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~----------~g~~~~~~~~~~~~~~~~~~~~~  457 (466)
                      ...+..+.+..|..| +.|+++.|+.+.++.++++++|.+.|.+.|.          .++...|++.+++.+++.+.+++
T Consensus       408 ~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~  487 (502)
T TIGR00887       408 GPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLL  487 (502)
T ss_pred             CCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheE
Confidence            233455666788888 6899999999999999999999999999884          24456777777777766555443


Q ss_pred             h-cCCCcc
Q 012315          458 F-STGEKV  464 (466)
Q Consensus       458 ~-~~~~~~  464 (466)
                      + ++++|.
T Consensus       488 lpEt~~~~  495 (502)
T TIGR00887       488 IPETKGKS  495 (502)
T ss_pred             eccCCCCC
Confidence            3 444443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK15075 citrate-proton symporter; Provisional

Probab=99.96  E-value=1.8e-26  Score=226.34  Aligned_cols=320  Identities=12%  Similarity=0.066  Sum_probs=211.2

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHH-HHHH-----HHHHHHHHhhhhhhhcccCcchHHHHH
Q 012315          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLI-QSSF-----FWGYLLTQIAGGIWADTVGGKAVLGFG  175 (466)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~-~~~~-----~~~~~~~~~~~g~l~dr~g~r~~~~~~  175 (466)
                      |++.....+++.++.+++...++...|.+.++++.++.+.+.+ .+..     .++..+++++.|+++||+|||+.++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            5556888888999999999999999999999999988776543 3322     223346889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhchh--------HHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHh
Q 012315          176 VVWWSIATALTPVAAKLGLP--------FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGL  247 (466)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~  247 (466)
                      .++.+++.+++++++  +++        .++++|+++|++.+...+....++.|++|+++|++++++.+.+.++|..+++
T Consensus        93 ~~~~~~~~~l~~~~~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~  170 (434)
T PRK15075         93 LSIMASGTLLIAFVP--GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAA  170 (434)
T ss_pred             HHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence            999999999999998  766        4688899999999999999999999999999999999999999888888888


Q ss_pred             hhHHHhh--------cccCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhc
Q 012315          248 AFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILS  319 (466)
Q Consensus       248 ~~~~~l~--------~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (466)
                      .+++.+.        +.+|||+.|++..+...+ ..   +. ++.+++.+   +...+   ++    +++.+..++...+
T Consensus       171 ~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~-~~---~~-~~~~~e~~---~~~~~---~~----~~~~~~~~~~~~~  235 (434)
T PRK15075        171 LLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF-IF---LI-RRSLEETE---EFLAR---KH----RPSMREIFRSLAA  235 (434)
T ss_pred             HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH-HH---HH-HHhcCCCH---HHHHh---hh----ccccccHHHHHHH
Confidence            8877653        468999999874432211 11   11 11111110   00000   00    0111122344455


Q ss_pred             ChhHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHhHHHH
Q 012315          320 KPPVWALI-VSHFCHNWGTFILLTWMPTYYNQ-------------------------------------IMQSIGFLGPA  361 (466)
Q Consensus       320 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~-------------------------------------~~~~~~~~~~~  361 (466)
                      +++.+... +..++....++....|.|.|+++                                     .....+.....
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~  315 (434)
T PRK15075        236 NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAI  315 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            55554432 33344555667788889999876                                     01111111111


Q ss_pred             H-HH---HHHhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHH-HHHHHHHHHHHHhccC
Q 012315          362 F-FL---TQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVL-AGVFGTAATGYILQHG  435 (466)
Q Consensus       362 ~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~-g~~i~~~~~g~l~~~~  435 (466)
                      . .+   ......++.........+.+.+.+...+....+..|..| +.|+++.|+.+..+.. ++.++|.+.|++.|..
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~  395 (434)
T PRK15075        316 LTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT  395 (434)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence            0 10   011111222222222222223333444444556666666 6899999997665554 5888999999999987


Q ss_pred             cch
Q 012315          436 SWD  438 (466)
Q Consensus       436 g~~  438 (466)
                      |+.
T Consensus       396 g~~  398 (434)
T PRK15075        396 GDK  398 (434)
T ss_pred             CCc
Confidence            753

>TIGR00898 2A0119 cation transport protein

Probab=99.96  E-value=4.4e-27  Score=235.61  Aligned_cols=333  Identities=16%  Similarity=0.118  Sum_probs=231.6

Q ss_pred             HhHhhhhhccCCC---hhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 012315          125 IAILPMSAEFNWN---PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR  201 (466)
Q Consensus       125 ~~~~~~~~~~~~s---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  201 (466)
                      +..|.+.+|+|++   ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.++++  +++.+++.|
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r  187 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP--NYTVFLVFR  187 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcc--cHHHHHHHH
Confidence            5678899999999   99999999999999999999999999999999999999999999999999999  999999999


Q ss_pred             HHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhhhc
Q 012315          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA  281 (466)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~  281 (466)
                      ++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+   ||+.|++.++..++..+.. ++.
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~  263 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFV  263 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-Hhc
Confidence            999999999999999999999999999999999999999999999999876654   9999999888877666555 455


Q ss_pred             ccCCCCCC-CCChHHH-HHHh----------------h--cccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHH----H
Q 012315          282 HSSPAEDP-QLRPAEK-KLIV----------------S--SCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWG----T  337 (466)
Q Consensus       282 ~~~~~~~~-~~~~~~~-~~~~----------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  337 (466)
                      ||+|+... +.+.++. +...                .  +.+.+++.++.++++++++|.++...+...+..+.    +
T Consensus       264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  343 (505)
T TIGR00898       264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY  343 (505)
T ss_pred             CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence            66553210 0111110 0000                0  00001111234678889998877655444332222    2


Q ss_pred             HHHHHHHHHH------------------------HHH-----HHHHHHhHHHHHHHHHHhcCCc--hHHHHHHHHHHhhh
Q 012315          338 FILLTWMPTY------------------------YNQ-----IMQSIGFLGPAFFLTQLSHVDS--PAMAVLCMACSQGT  386 (466)
Q Consensus       338 ~~~~~~~~~~------------------------l~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  386 (466)
                      +....+.+.+                        +.+     .....+.++.++..+.+...++  .+......++..++
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  423 (505)
T TIGR00898       344 YGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFG  423 (505)
T ss_pred             HHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            2211111111                        000     2222333333333333322222  24444444455555


Q ss_pred             hhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHh-cCCCcc
Q 012315          387 DAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF-STGEKV  464 (466)
Q Consensus       387 ~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  464 (466)
                      .....+..+.+..|..| +.|++++|+.+..+.+|++++|.+.+ +.+ .++...+.+.+++.+++.++.+++ +++++.
T Consensus       424 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~lpet~~~~  501 (505)
T TIGR00898       424 ITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KWLFLPLVLFGGLALLAGILTLFLPETKGVP  501 (505)
T ss_pred             HHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHHhhHHHHHHHHHHHHHHHHHcCcCCCCCC
Confidence            55566777788888888 58999999999999999999999999 444 455566666666666665555444 444444


Q ss_pred             c
Q 012315          465 V  465 (466)
Q Consensus       465 ~  465 (466)
                      +
T Consensus       502 l  502 (505)
T TIGR00898       502 L  502 (505)
T ss_pred             C
Confidence            3

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.96  E-value=1.9e-26  Score=219.84  Aligned_cols=309  Identities=29%  Similarity=0.482  Sum_probs=250.3

Q ss_pred             HHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHH
Q 012315          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP  187 (466)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  187 (466)
                      .+.+..+..........+..|.+.+++|.+..+.+++.+...++..+++++.|+++||+|||+.+..+.++..++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~   82 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA   82 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            34556677778888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHh
Q 012315          188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFG  267 (466)
Q Consensus       188 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~  267 (466)
                      +.+  +++.+++.|++.|++.+...+...+++.|++|+++|++.+++.+....+|..++|.+++.+.+..+|++.+++.+
T Consensus        83 ~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  160 (352)
T cd06174          83 FAS--SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA  160 (352)
T ss_pred             Hhc--cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            988  999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          268 SLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY  347 (466)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (466)
                      ++.++..+...+..                                       |.++...+..++..........+.|.+
T Consensus       161 ~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (352)
T cd06174         161 ILGLLLALLLLFLL---------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLY  201 (352)
T ss_pred             HHHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            88777665544432                                       112222222333333333333333333


Q ss_pred             HHH-------------------------------------H-HHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhh
Q 012315          348 YNQ-------------------------------------I-MQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAF  389 (466)
Q Consensus       348 l~~-------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (466)
                      .++                                     . ....+.....+........++.+.......+.+.+.+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~  281 (352)
T cd06174         202 LQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGF  281 (352)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhc
Confidence            322                                     3 44555555555555555555566666667777777777


Q ss_pred             hhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHH
Q 012315          390 SQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNL  457 (466)
Q Consensus       390 ~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  457 (466)
                      ..+.......+..| ++|++.+|+.+....+|..++|.+.|.+.|..+++..+.+.+++.+++.+....
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         282 AFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             cchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence            77888888888777 799999999999999999999999999999999999999998888887766543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.96  E-value=2.8e-26  Score=221.26  Aligned_cols=329  Identities=16%  Similarity=0.164  Sum_probs=227.3

Q ss_pred             hhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHH
Q 012315          118 MDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFL  197 (466)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l  197 (466)
                      +...++.+.+|.+.+++|+++.+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++.+.+  +++.+
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~--~~~~~   82 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ--TIDQL   82 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc--cHHHH
Confidence            3455677889999999999999999999999999999999999999999999999999999999999999988  99999


Q ss_pred             HHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHH
Q 012315          198 LVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW  277 (466)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~  277 (466)
                      ++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..||++.|++.+++.++..+..
T Consensus        83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102         83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998999999998888877766665


Q ss_pred             hhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 012315          278 LSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ-------  350 (466)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------  350 (466)
                      .+..+++++++++.+...++            ...++++.++++.++...+..++.......+..+.|.++.+       
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~  230 (377)
T PRK11102        163 FFFIPETLPKERRQPFHLRT------------TIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQ  230 (377)
T ss_pred             HHhCCccCcccccCCCChHH------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHH
Confidence            55555543221111100000            01235567888888877766666666666666666666554       


Q ss_pred             ------------------------------HHHHHHhH---HHHHHHHHHhc-CCchHHHHHHHHHHhhhhhhhhhhhhh
Q 012315          351 ------------------------------IMQSIGFL---GPAFFLTQLSH-VDSPAMAVLCMACSQGTDAFSQSGLYS  396 (466)
Q Consensus       351 ------------------------------~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (466)
                                                    .....+..   ...+.+..... ....+...+...+..+...........
T Consensus       231 ~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (377)
T PRK11102        231 NFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMA  310 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence                                          11111111   11111111111 112222222332333333333444445


Q ss_pred             hhcccCccchhhHHHHHHHHH-HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHhcCCC
Q 012315          397 NHQDIAPRYSGVLLGLSNTAG-VLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGE  462 (466)
Q Consensus       397 ~~~~~~p~~~g~~~g~~~~~~-~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (466)
                      ...+..|+.++++.++.+... .+|..+++.+.+. .+ .++...+...+++.+++++..++..+++
T Consensus       311 ~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (377)
T PRK11102        311 VILDEFPHMAGTASSLAGTLRFGIGAIVGALLSLA-PF-TSAWPMVWSMAFCSILSILFYLYASRPK  375 (377)
T ss_pred             HHhccccccchHHHHHHHHHHHHHHHHHHHHHHhc-cC-CChHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            556667889999999887765 3556666655443 22 2333334444555555555555554443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.96  E-value=2.7e-26  Score=221.65  Aligned_cols=337  Identities=12%  Similarity=0.013  Sum_probs=231.2

Q ss_pred             HHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHH
Q 012315          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP  187 (466)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  187 (466)
                      ..+++.++..+.........+.+.+++|.+..+.+++.+.+.+++.++.++.|+++||+|||++++++.++.+++.+++.
T Consensus         7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~   86 (393)
T PRK11195          7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML   86 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence            44566666666555566666677889999999999999999999999999999999999999999999999999888877


Q ss_pred             HHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHh
Q 012315          188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFG  267 (466)
Q Consensus       188 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~  267 (466)
                      +..  +.   ++.|+++|++.+...|...+++.|++|+++|++++|+.+....+|.++||.++|++.+. .|+..+.+.+
T Consensus        87 ~~~--~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~  160 (393)
T PRK11195         87 FGI--HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCA  160 (393)
T ss_pred             HHH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            776  53   67899999999999999999999999999999999999999999999999999999885 4777777665


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          268 SLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY  347 (466)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (466)
                      ...++..+ ..+..|+.+.+++..+.+......+        ....++.++++|.++.......+...........++.|
T Consensus       161 ~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (393)
T PRK11195        161 LIYLLAAL-FNLFIPRLGARRPGQSWNPIALLRD--------FFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAW  231 (393)
T ss_pred             HHHHHHHH-HHhcCCCCcccccccCCCHHHHHHH--------HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55443333 3344454432221111100000000        01124567788877655544444444444444455555


Q ss_pred             HHH-------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhhh
Q 012315          348 YNQ-------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFS  390 (466)
Q Consensus       348 l~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (466)
                      +++                                     .....++. .+.........++.+......++.+.+.+..
T Consensus       232 ~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~  310 (393)
T PRK11195        232 APVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFF  310 (393)
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence            544                                     11112221 1122222222334444444444444444554


Q ss_pred             hhhhhhhhcccCcc-c-hhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHhcCC
Q 012315          391 QSGLYSNHQDIAPR-Y-SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTG  461 (466)
Q Consensus       391 ~~~~~~~~~~~~p~-~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  461 (466)
                      .+...+..++..|+ . +|++.++.+...+++..++..+.+.+ +..|.+..+.+.+...+++..+.+.++.+
T Consensus       311 ~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T PRK11195        311 VVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLWRWH  382 (393)
T ss_pred             hhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555556666665 3 69999999999999999999999966 56788888888777777777666666433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.96  E-value=1.1e-25  Score=218.19  Aligned_cols=227  Identities=18%  Similarity=0.219  Sum_probs=179.2

Q ss_pred             HHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHH
Q 012315          107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (466)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  186 (466)
                      .......+..........+.+|.+.+++|.+..+.++..+.+.++..+++++.|+++||+|||+.+..+.++.+++.+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~   85 (392)
T PRK10473          6 LCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLC   85 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            34444555555666677788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHH
Q 012315          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (466)
Q Consensus       187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~  266 (466)
                      .+.+  +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..||++.|++.
T Consensus        86 ~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~  163 (392)
T PRK10473         86 SLAE--TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM  163 (392)
T ss_pred             HHhC--cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence            8888  88999999999999999889999999999999999999999999999999999999999988889999999998


Q ss_pred             hHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (466)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (466)
                      +++.++..++.....+|+++++++.+...               ....++.++++.++...+...+.......+..+.|.
T Consensus       164 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (392)
T PRK10473        164 AAMGILVLLLSLFILKETRPARAPAASSK---------------PRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPV  228 (392)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcccCCccch---------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            88877766665555555432221111000               112345677887766555544444444445555565


Q ss_pred             HHHH
Q 012315          347 YYNQ  350 (466)
Q Consensus       347 ~l~~  350 (466)
                      ++.+
T Consensus       229 ~~~~  232 (392)
T PRK10473        229 LLME  232 (392)
T ss_pred             HHHH
Confidence            5544

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.96  E-value=1.3e-25  Score=217.27  Aligned_cols=329  Identities=16%  Similarity=0.110  Sum_probs=214.8

Q ss_pred             HHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHH-HHHHHHhhhhhhhcccCcchHH-HHHHHHHHHHHH
Q 012315          108 LCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVGGKAVL-GFGVVWWSIATA  184 (466)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~  184 (466)
                      ...+..++.........+.+|. +.+++|.|++++|++.+...+ +..++.+++|+ .||+|+||.+ ..+.++.+++..
T Consensus        19 ~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~   97 (393)
T PRK15011         19 AFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACT   97 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHH
Confidence            3344466666666667777766 678899999999999876655 55555555555 9999999875 455666667777


Q ss_pred             HHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCch--hHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHH
Q 012315          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAER--SRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV  262 (466)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~  262 (466)
                      +.++++  +++.+++.+.+.|...+...+...+++.++.++++|  +...++.+.+.++|.++||++++++.+++|||..
T Consensus        98 ~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~  175 (393)
T PRK15011         98 LFAWNR--NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVM  175 (393)
T ss_pred             HHHHhh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHH
Confidence            778887  888876665555544456778888888888766555  3456788999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcC-hhHHHHHHHHHHHHHHHHHHH
Q 012315          263 FYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSK-PPVWALIVSHFCHNWGTFILL  341 (466)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  341 (466)
                      |++.++..++..+..++..||.+++++..+ .+.          +     .   ..++ +..+......++....+..+.
T Consensus       176 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (393)
T PRK15011        176 YLSAAVAFIVCGVMVWLFLPSMRKELPLAT-GTL----------E-----A---PRRNRRDTLLLFVICTLMWGTNSLYI  236 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhcCccCCCCcccc-ccc----------c-----c---cccccccHHHHHHHHHHHHHHHHHHH
Confidence            999888877776666666666543222110 000          0     0   0111 222333333344444455566


Q ss_pred             HHHHHHHHH-------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 012315          342 TWMPTYYNQ-------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQ  384 (466)
Q Consensus       342 ~~~~~~l~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (466)
                      .+.|.|+++                                     .....+..............++.+..+....+.+
T Consensus       237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  316 (393)
T PRK15011        237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNA  316 (393)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            678888765                                     1111111111111111112223333333323232


Q ss_pred             hhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHh
Q 012315          385 GTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  458 (466)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  458 (466)
                      ...+...+....+..+..|+++++++++++...++|..++|.+.|.+.|..||+..|.+.+++.+++.+..+..
T Consensus       317 ~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        317 IYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            23333333344555677788899999999999999999999999999999999999988888888777666655

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.96  E-value=2.2e-28  Score=224.98  Aligned_cols=332  Identities=16%  Similarity=0.200  Sum_probs=243.7

Q ss_pred             CchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHH
Q 012315          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (466)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (466)
                      +..++.+.+.++..+++..+.+.+....+.+++.+|++++..|++.+.+.+...+++|++|+++|||+||+++.+|..++
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW  108 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW  108 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence            44667788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC-
Q 012315          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-  258 (466)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-  258 (466)
                      .++.++.+++.  .+|++.++|.+.|+|.+...++++++++|.+|.++|++++++++....+|..+|.+++..+.+..+ 
T Consensus       109 ~~Av~~~~fs~--~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~  186 (493)
T KOG1330|consen  109 TLAVFASGFSN--HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW  186 (493)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc
Confidence            99999999998  999999999999999999999999999999999999999999999999999999999999988777 


Q ss_pred             chHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHH
Q 012315          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTF  338 (466)
Q Consensus       259 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (466)
                      ||+.|++.+++++++.++.+++.+|+++...++.+.+.+.     ..+....-.+.+.+.+++.+....+.+....+...
T Consensus       187 Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~-----~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~G  261 (493)
T KOG1330|consen  187 WRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM-----VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIG  261 (493)
T ss_pred             eEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcC-----CCCccchHHHHHHHHccCceeeehHHHHHHHHhcc
Confidence            9999999999999999988888777664322211111100     00001111233445555665555555555555555


Q ss_pred             HHHHHHHHHHHH---------------------------------------------------HHHHHHhHHHHHHHHHH
Q 012315          339 ILLTWMPTYYNQ---------------------------------------------------IMQSIGFLGPAFFLTQL  367 (466)
Q Consensus       339 ~~~~~~~~~l~~---------------------------------------------------~~~~~~~~~~~~~~~~~  367 (466)
                      ++.-|.|.++..                                                   .....+...++.++...
T Consensus       262 s~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~  341 (493)
T KOG1330|consen  262 SLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLF  341 (493)
T ss_pred             ccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHH
Confidence            555555554443                                                   22333333333333333


Q ss_pred             hcCC--chHHHHHHHHHHhhhhhhhhhhhhhhhcc-cCccchhhHHHHHHHHH-HHHHHHHHHHHHHHhcc-Ccch
Q 012315          368 SHVD--SPAMAVLCMACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAG-VLAGVFGTAATGYILQH-GSWD  438 (466)
Q Consensus       368 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~~~g~~~~~~-~~g~~i~~~~~g~l~~~-~g~~  438 (466)
                      ....  ..+..++.++++.......+....-+..+ +.|++|.++.++...+. .+|.+-+|++.|.+.|+ .||+
T Consensus       342 ~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  342 PAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            2222  22222233333333223333333333334 45689999999988777 45666667799999998 5555

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.3e-26  Score=226.61  Aligned_cols=359  Identities=16%  Similarity=0.184  Sum_probs=293.2

Q ss_pred             CCCchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHH
Q 012315           98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVV  177 (466)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~  177 (466)
                      ...+.|.+.+..++...........++.+.+.++++++.+..+++|+.++......+..++.+.+.||+|.|.+.++|.+
T Consensus        40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~  119 (509)
T KOG2504|consen   40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL  119 (509)
T ss_pred             CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence            44567888888888888777778888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHH-HHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc
Q 012315          178 WWSIATALTPVAAKLGLPFLLVV-RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (466)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~l~~~-~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~  256 (466)
                      +.+++.++..|++  ++|++++. .++.|+|.++.+.....++..+| +++|+.++|+...+.++|..+-|.+..++.+.
T Consensus       120 v~~~g~~lssF~~--~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~  196 (509)
T KOG2504|consen  120 VAALGLLLSSFAT--SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSK  196 (509)
T ss_pred             HHHHHHHHHHHHh--hHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHH
Confidence            9999999999999  99888876 78899999999999999999999 58999999999999999999999999999999


Q ss_pred             cCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCC-----------------------------CCh---HHHHHHhh-cc
Q 012315          257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ-----------------------------LRP---AEKKLIVS-SC  303 (466)
Q Consensus       257 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~---~~~~~~~~-~~  303 (466)
                      +|||..+++.+.+.+-.++......|..+...+.                             ..+   .+.....+ +.
T Consensus       197 ~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (509)
T KOG2504|consen  197 YGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPD  276 (509)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCc
Confidence            9999999999998877777766666633222111                             000   00000000 00


Q ss_pred             cCCC-CCCCcch---hhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Q 012315          304 ASKE-PVKTIPW---GLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ-----------------------------  350 (466)
Q Consensus       304 ~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------------------------  350 (466)
                      +... +.+....   .++++++.++.+.+...+...++.....++|.|..+                             
T Consensus       277 ~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~l  356 (509)
T KOG2504|consen  277 KWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLL  356 (509)
T ss_pred             cccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhh
Confidence            0000 1111112   478999999999999999999999999999999988                             


Q ss_pred             ---------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHH
Q 012315          351 ---------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLA  420 (466)
Q Consensus       351 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g  420 (466)
                               .+..+++++.++........++.+.+....++.+++.+........+..+..+ ++-..+.|+...+..++
T Consensus       357 aD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~  436 (509)
T KOG2504|consen  357 ADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIG  436 (509)
T ss_pred             cCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHH
Confidence                     45556666666666777777788777777777777777777777666666665 78999999999999999


Q ss_pred             HHHHHHHHHHHhccC-cchhHHHHHHHHHHHHHHHHHHhc
Q 012315          421 GVFGTAATGYILQHG-SWDDVFKVSVGLYLVGTAVWNLFS  459 (466)
Q Consensus       421 ~~i~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~  459 (466)
                      ..+||++.|++.|.. +|...|++++.+.+++.+++++..
T Consensus       437 ~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  437 ALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            999999999999994 499999999999999987777665

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.95  E-value=2.5e-25  Score=214.64  Aligned_cols=322  Identities=12%  Similarity=0.063  Sum_probs=230.1

Q ss_pred             HHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcc----hHHHHHHHHHHHHHHHHHH
Q 012315          113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK----AVLGFGVVWWSIATALTPV  188 (466)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~~~~~  188 (466)
                      ++........+.+.+|.+.+++|.|..++|++.+++.++..++++++|+++||+|||    +.+.++..+.  .......
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~   90 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG   90 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence            455556667888899999999999999999999999999999999999999999994    3332222221  2222233


Q ss_pred             HhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhH
Q 012315          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS  268 (466)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~  268 (466)
                      .+  ++|.+++.|++.|++.+...+...+++.++  .++|+++++......++|.++||++++++.+++|||..|++.++
T Consensus        91 ~~--~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~  166 (382)
T PRK11128         91 AH--SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTA  166 (382)
T ss_pred             cc--cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            45  899999999999999888888888888877  36688889999999999999999999999999999999988776


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          269 LGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY  348 (466)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  348 (466)
                      ..++..+. .+..|+.+++.++    +++         .++...++++++|+|.+|...+..++.........++.|.|+
T Consensus       167 ~~~~~~~~-~~~~~~~~~~~~~----~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  232 (382)
T PRK11128        167 GVASMLLG-QLLRPTIMPQGES----RQQ---------ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW  232 (382)
T ss_pred             HHHHHHHH-HHccCCCCCcccc----ccc---------cccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            54444333 2333332111100    000         001123578899999999888877777777777888888888


Q ss_pred             HH------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhhhhh
Q 012315          349 NQ------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQS  392 (466)
Q Consensus       349 ~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (466)
                      ++                                    .....+.+..++........++.+..++..++.+...+...+
T Consensus       233 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  312 (382)
T PRK11128        233 QAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHL  312 (382)
T ss_pred             HHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            76                                    223333444444444444556666666666666666666666


Q ss_pred             hhhhhhcccCccchhhHHHHHH-HHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHH
Q 012315          393 GLYSNHQDIAPRYSGVLLGLSN-TAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVW  455 (466)
Q Consensus       393 ~~~~~~~~~~p~~~g~~~g~~~-~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  455 (466)
                      ....+..+..++++++..++.+ ....+|..++|.++|.+.|..|+ ..++..+++.++++++.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T PRK11128        313 AAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFIR  375 (382)
T ss_pred             HHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence            6666666666667788899887 44567779999999999999887 46666666655554443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.95  E-value=1.2e-24  Score=215.67  Aligned_cols=339  Identities=12%  Similarity=0.116  Sum_probs=238.9

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhccc-----CcchH-HHHHHHHH
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-----GGKAV-LGFGVVWW  179 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~-~~~~~~~~  179 (466)
                      ....++..+..+.........+|.+.++.|.+..++|.+ +.....+ ++.+++|+++||+     |||+. +..+.+..
T Consensus        14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~   91 (491)
T PRK11010         14 SAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL   91 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence            444555566677777788888999999999999999997 3334444 5899999999999     99885 66777777


Q ss_pred             HHHHHHHHHHh-hhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc-cc
Q 012315          180 SIATALTPVAA-KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RF  257 (466)
Q Consensus       180 ~~~~~~~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~-~~  257 (466)
                      +++..++++.+ ..+++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++++.+ ..
T Consensus        92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~  171 (491)
T PRK11010         92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL  171 (491)
T ss_pred             HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            78877777753 22678888899999999999999999999999999999999999999999999999999999998 57


Q ss_pred             CchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHH
Q 012315          258 GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGT  337 (466)
Q Consensus       258 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (466)
                      |||..|++.+++.++..+..++ .||+++..+..+. ..           +....++++.++++..|...+..++.....
T Consensus       172 GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~~~~-~~-----------~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~  238 (491)
T PRK11010        172 GWQGMYWLMAALLIPCIIATLL-APEPTDTIPVPKT-LE-----------QAVVAPLRDFFGRNNAWLILLLIVLYKLGD  238 (491)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHh-cCCCccccccccc-hh-----------hhHHHHHHHHHcCcCHHHHHHHHHHHHHHH
Confidence            9999999988877666554443 4543321111000 00           001124667788888777766666666666


Q ss_pred             HHHHHHHHHHHHH--------------------------------------HHHHHHhHHHH---HHHHHHhcC-CchHH
Q 012315          338 FILLTWMPTYYNQ--------------------------------------IMQSIGFLGPA---FFLTQLSHV-DSPAM  375 (466)
Q Consensus       338 ~~~~~~~~~~l~~--------------------------------------~~~~~~~~~~~---~~~~~~~~~-~~~~~  375 (466)
                      .....+.+.|+.+                                      .....+.+..+   +.+...... ++.+.
T Consensus       239 ~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~  318 (491)
T PRK11010        239 AFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYS  318 (491)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            6667777777654                                      01111111101   111111111 22222


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Q 012315          376 AVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAV  454 (466)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  454 (466)
                      +....++..+..+...+..++...+..+ +..++..|+.+....+|..+++++.|++.|..||+..|.+.+++.+++.+.
T Consensus       319 l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~  398 (491)
T PRK11010        319 MGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLL  398 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            2223333222233334445555555555 588999999999999999999999999999999999999999999888877


Q ss_pred             HHHhc
Q 012315          455 WNLFS  459 (466)
Q Consensus       455 ~~~~~  459 (466)
                      ....+
T Consensus       399 ~~~~~  403 (491)
T PRK11010        399 LLVCR  403 (491)
T ss_pred             HHHHH
Confidence            76664

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.95  E-value=4.4e-25  Score=217.57  Aligned_cols=353  Identities=13%  Similarity=0.076  Sum_probs=247.2

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhhh-hhc--cCCChhhHHHHHHHHHHHHHHHHhhhhhhhcc-cCcchHHHHHHHHHHH
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILPM-SAE--FNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWWSI  181 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~  181 (466)
                      +..+....+...+..+...+.+|.+ .++  +|++..+.|++.+.+.++..++++++|+++|| +|||+++.++.++.++
T Consensus        12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~   91 (475)
T TIGR00924        12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLML   91 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHH
Confidence            4455556666666667777777775 445  89999999999999999999999999999999 8999999999999999


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCc---hhHHHHHHHHHHHhHHHHHhhhHHHhhcccC
Q 012315          182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE---RSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (466)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g  258 (466)
                      +.++.++++  +++.+++++++.|+|.|...+...+++++++|+++   |++++++++.+.++|.++||.+++++.+++|
T Consensus        92 g~~~~~~~~--~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g  169 (475)
T TIGR00924        92 GHFMLAMSI--YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG  169 (475)
T ss_pred             HHHHHHhcc--cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999887  78888899999999999999999999999998754   8889999999999999999999999999999


Q ss_pred             chHHHHHHhHHHHHHHHHHhhhccc---CCCCCCCCChHHHHHHhh-----------------cccCC------------
Q 012315          259 WPSVFYSFGSLGTVWFTVWLSKAHS---SPAEDPQLRPAEKKLIVS-----------------SCASK------------  306 (466)
Q Consensus       259 w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----------------~~~~~------------  306 (466)
                      |++.|.+.++..++..+......+.   .+++++..++++.+....                 ..+..            
T Consensus       170 ~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (475)
T TIGR00924       170 YHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLA  249 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            9999998776555444333332221   111111111111000000                 00000            


Q ss_pred             --------CCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Q 012315          307 --------EPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ----------------------------  350 (466)
Q Consensus       307 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------------------------  350 (466)
                              ..++.....+..|...+..+++...+....+....+.++.+.++                            
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~  329 (475)
T TIGR00924       250 VIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGS  329 (475)
T ss_pred             HHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHH
Confidence                    00000000111112223344444455555555555555555443                            


Q ss_pred             --------------------HHHHHHhHHHHHHHHHHh---------cCCchHHHHHHHHHHhhhhhhhhhhhhhhhccc
Q 012315          351 --------------------IMQSIGFLGPAFFLTQLS---------HVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDI  401 (466)
Q Consensus       351 --------------------~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (466)
                                          .-..++++..++.+....         ...+.++.+...++.+.+.....|.......+.
T Consensus       330 p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~  409 (475)
T TIGR00924       330 PVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKI  409 (475)
T ss_pred             HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence                                001233333333333332         134667777778888888888889999988888


Q ss_pred             Cc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHhcC
Q 012315          402 AP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFST  460 (466)
Q Consensus       402 ~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  460 (466)
                      .| +.||+++|+......+|..+++.+.+...+..++...|...++..++..++.++..+
T Consensus       410 aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       410 APQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            87 589999999999999999999999998888778888888877777766666655543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.95  E-value=3.2e-25  Score=201.23  Aligned_cols=339  Identities=17%  Similarity=0.163  Sum_probs=256.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHH
Q 012315          104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT  183 (466)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  183 (466)
                      ..+..+...+++.++......+.+|.+++.++++..+.+++..++..++.+.+++.|++.+|+|+|+.++.|+.++++++
T Consensus        13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~   92 (422)
T COG0738          13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA   92 (422)
T ss_pred             eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            34566677788888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh-hhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc------
Q 012315          184 ALTPVAA-KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR------  256 (466)
Q Consensus       184 ~~~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~------  256 (466)
                      .+..=+. ..++..++++.++.|.|.+...+..+.++....++++..+.+++.+.++++|.+++|++++.++.+      
T Consensus        93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~  172 (422)
T COG0738          93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM  172 (422)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence            8885322 227888888999999999999999999999999998999999999999999999999999988762      


Q ss_pred             -------------cCchHHHHHHhHHHHHHHHHHhhhc-ccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChh
Q 012315          257 -------------FGWPSVFYSFGSLGTVWFTVWLSKA-HSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP  322 (466)
Q Consensus       257 -------------~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (466)
                                   -.|+.+|...+...+++.+.....+ |+.+...++..+.               ++....+++++|.
T Consensus       173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~---------------~~~~~~~l~~~~~  237 (422)
T COG0738         173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGAS---------------GSAGLSSLFQNKH  237 (422)
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccccc---------------ccchHHHHHhChH
Confidence                         1378888887777666555444332 2222111111100               1114567899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHhHHHHHHHH
Q 012315          323 VWALIVSHFCHNWGTFILLTWMPTYYNQ-------------------------------------IMQSIGFLGPAFFLT  365 (466)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------------------------------------~~~~~~~~~~~~~~~  365 (466)
                      ++...+..+++...+....+|++.|+.+                                     .......++..+.+.
T Consensus       238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~  317 (422)
T COG0738         238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLL  317 (422)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988                                     122222222223333


Q ss_pred             HHhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHH
Q 012315          366 QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSV  445 (466)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~  445 (466)
                      .....++ .+.+.+..+.+.+.+..+|..++...+..|++...+.+ ...+..+|+++.|++.|++.|..|....+....
T Consensus       318 ~~~l~~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts~~s~-~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~p  395 (422)
T COG0738         318 AVALIGG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTSVGSG-LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVP  395 (422)
T ss_pred             HHHHhcC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccccccce-eeeeheecchHHHHHHHHHHHhhhhHHHHHHHH
Confidence            3333444 33444455556667778888888887777755444444 445778899999999999999988887776444


Q ss_pred             HHHHHHHHHHHHhc
Q 012315          446 GLYLVGTAVWNLFS  459 (466)
Q Consensus       446 ~~~~~~~~~~~~~~  459 (466)
                      .++.+-++.+.+..
T Consensus       396 llc~lyV~~~~~~~  409 (422)
T COG0738         396 LLCYLYVLFFALIG  409 (422)
T ss_pred             HHHHHHHHHHHHHh
Confidence            44444443333333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.95  E-value=1.3e-24  Score=213.72  Aligned_cols=342  Identities=18%  Similarity=0.181  Sum_probs=263.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHH
Q 012315          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (466)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (466)
                      .+..++++.++..++..+.....+.+..+..-|+..++++..+..+..++.++++|.++||++||++++.+-++.++..+
T Consensus        11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~   90 (524)
T PF05977_consen   11 NFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVAL   90 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence            34455667777777777777778887777788999999999999999999999999999999999999999888776654


Q ss_pred             HHHHH---hhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchH
Q 012315          185 LTPVA---AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS  261 (466)
Q Consensus       185 ~~~~~---~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~  261 (466)
                      ..++.   ...+.|.+++..++.|++.++..|+..+++.+.+|+++...++++.+...++..++||.++|.++..+|-.+
T Consensus        91 ~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~  170 (524)
T PF05977_consen   91 LLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAA  170 (524)
T ss_pred             HHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            44332   223678899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHH
Q 012315          262 VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL  341 (466)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (466)
                      +|.+.++..++.........++.++ ++..++.-.+           .-+..++.+.++|.+...++..++.++....+.
T Consensus       171 ~f~inalsfl~~i~~l~~~~~~~~~-~~~~~e~~~~-----------~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~  238 (524)
T PF05977_consen  171 AFLINALSFLISILALLRWKPPPPP-SSLPRERFFS-----------ALREGLRYVRSSPPLRSVLLRSFLFNLFASAVW  238 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHccccccc-cccchhhhhh-----------hHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHH
Confidence            9998887666654444433332221 1111111111           112346667778887777666666666666677


Q ss_pred             HHHHHHHHH-------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 012315          342 TWMPTYYNQ-------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQ  384 (466)
Q Consensus       342 ~~~~~~l~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (466)
                      ..+|.+.++                                     .+...+.+..++.+..+...++.+.....+++.+
T Consensus       239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G  318 (524)
T PF05977_consen  239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAG  318 (524)
T ss_pred             HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            788888876                                     3334445555555666667777777777777777


Q ss_pred             hhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHh
Q 012315          385 GTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  458 (466)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  458 (466)
                      .+.........+..+...| +.+|++++++.+....+..+|..+.|.+.|..|.+..+.+.++..+++.++....
T Consensus       319 ~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~  393 (524)
T PF05977_consen  319 AAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF  393 (524)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777777677677776666 6999999999999999999999999999999999999888887777776666555

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.95  E-value=2.8e-25  Score=213.31  Aligned_cols=309  Identities=15%  Similarity=0.169  Sum_probs=213.9

Q ss_pred             HHHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHH
Q 012315          107 VLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL  185 (466)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  185 (466)
                      +..++.++........+.+..|. +.+++|+|+.+.+++.+++.++..+++++.|+++||+|||+.+.++.++.+++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~   83 (366)
T TIGR00886         4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW   83 (366)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            45666777777888889999995 99999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc----------
Q 012315          186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH----------  255 (466)
Q Consensus       186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~----------  255 (466)
                      +++++. +++.+++.|++.|++.+. .+...+++.+++|+++|++++++.....++|..+++.+++.+..          
T Consensus        84 ~~~~~~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~  161 (366)
T TIGR00886        84 AGLAVQ-SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA  161 (366)
T ss_pred             HHHHhh-hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            887653 678888999999998654 56678999999999999999999998888888888877776654          


Q ss_pred             ccCchHHH-HHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHH
Q 012315          256 RFGWPSVF-YSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHN  334 (466)
Q Consensus       256 ~~gw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (466)
                      ..+||+.| +..+++..+..++.....++.++++++.++.+.+   ......++.......+.+++|++|...+..++..
T Consensus       162 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (366)
T TIGR00886       162 HLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFK---GARWSVGTGALGDQLKVFRDRHTWILALLYSVTF  238 (366)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccc---cccccccchhHHHHHHHHhccchhhHHHHHHHHH
Confidence            34899999 4445555554444444444444322111100000   0000000001114566788899988888877777


Q ss_pred             HHHHHHHHHHHHHHHH-------------------------------------HHHHHHh--HHHHHHHHHHhcCC--ch
Q 012315          335 WGTFILLTWMPTYYNQ-------------------------------------IMQSIGF--LGPAFFLTQLSHVD--SP  373 (466)
Q Consensus       335 ~~~~~~~~~~~~~l~~-------------------------------------~~~~~~~--~~~~~~~~~~~~~~--~~  373 (466)
                      ..+.....+.|.|+++                                     .....+.  ...+..+.......  +.
T Consensus       239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (366)
T TIGR00886       239 GSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSL  318 (366)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchH
Confidence            7778888999999876                                     0111111  11111111111121  23


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHH
Q 012315          374 AMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLA  420 (466)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g  420 (466)
                      +.......+.....+......+....+..|+++|+++|+.+..+++|
T Consensus       319 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       319 AVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCC
Confidence            33333333333344444555666667777889999999998888765

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.94  E-value=6.2e-25  Score=214.70  Aligned_cols=341  Identities=13%  Similarity=0.035  Sum_probs=208.7

Q ss_pred             HHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHH
Q 012315          108 LCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (466)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  186 (466)
                      ...+.+++.........+.+|. +.+++|+|..++|++.+++.++..+++++.|+++||+|||+++.++..+.+++....
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~   93 (420)
T PRK09528         14 IFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPF   93 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            3344555555555566666666 555699999999999999999999999999999999999999988766655443322


Q ss_pred             HH---Hhhh---chhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCch
Q 012315          187 PV---AAKL---GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP  260 (466)
Q Consensus       187 ~~---~~~~---~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~  260 (466)
                      ..   .+..   .....++++++.|.+.....+....+..+.  .++++..+|......++|..++|++++++.+ .+|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~  170 (420)
T PRK09528         94 FIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQ  170 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCch
Confidence            11   1100   111122233334433333333333433322  3567788899999999999999999999876 4899


Q ss_pred             HHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHH
Q 012315          261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL  340 (466)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (466)
                      ..|++.+++.++..+..+...++++++....++ +.       +++++......++.+|||.+|.+.+..++....+...
T Consensus       171 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~  242 (420)
T PRK09528        171 INFWLGSGSALILLVLLFFAKPDAPSTAKVANA-LG-------ANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVF  242 (420)
T ss_pred             HhHHHHHHHHHHHHHHHhcccccccchhhhccc-hh-------cccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHH
Confidence            999988877776665555544443322110000 00       0001111223456788888776655544444444444


Q ss_pred             HHHHHHHHHH----------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHH
Q 012315          341 LTWMPTYYNQ----------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCM  380 (466)
Q Consensus       341 ~~~~~~~l~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (466)
                      ..+.|.|+.+                                        .....+.++..+........++.+..+...
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~  322 (420)
T PRK09528        243 DQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILK  322 (420)
T ss_pred             HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            4445555433                                        111122222222222333344555444444


Q ss_pred             HHHhhhhhhhhhhhhhhhcccCc-cchhhHHHH-HHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHh
Q 012315          381 ACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGL-SNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  458 (466)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~-~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  458 (466)
                      .+.+.......+....+..+..| +.+++..+. ++....+|.+++|.+.|++.|..||+..|.+.+++.+++.++....
T Consensus       323 ~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~  402 (420)
T PRK09528        323 LLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFT  402 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444455555444 677777665 6777899999999999999999999999998888877766655554


Q ss_pred             c
Q 012315          459 S  459 (466)
Q Consensus       459 ~  459 (466)
                      .
T Consensus       403 ~  403 (420)
T PRK09528        403 L  403 (420)
T ss_pred             h
Confidence            3

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.94  E-value=3.2e-25  Score=214.53  Aligned_cols=246  Identities=20%  Similarity=0.365  Sum_probs=205.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHH-hHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHH
Q 012315          103 WFIVVLCFSAFLLCNMDRVNMSI-AILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI  181 (466)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  181 (466)
                      +.++..++..++....+...++- .+-.+.+|.+....+.+.+.+++.++++++.+++|.+.||++..+.+....++.++
T Consensus        44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~  123 (495)
T KOG2533|consen   44 LFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGL  123 (495)
T ss_pred             HHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHH
Confidence            34444555556666666554443 23347799999999999999999999999999999999999999999988888888


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhh------c
Q 012315          182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI------H  255 (466)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~------~  255 (466)
                      ..++....+  |++.+++.|++.|+..+..+|....+++.|+.+++|+..+|++....++|.++|.+++..+.      .
T Consensus       124 ~~~~~~~~~--s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~  201 (495)
T KOG2533|consen  124 FGFLTAAVH--SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG  201 (495)
T ss_pred             HHHHHHHHh--hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence            887777788  99999999999999999999999999999999999999999999999999999999999863      4


Q ss_pred             ccCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcc------cCCCCCCCcchhhhhcChhHHHHHHH
Q 012315          256 RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSC------ASKEPVKTIPWGLILSKPPVWALIVS  329 (466)
Q Consensus       256 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (466)
                      ..|||+.|++.|++.++..++.+++.|+.|.+..-.+++|+....++.      ..+++.+...+++.+++|.+|...+.
T Consensus       202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~  281 (495)
T KOG2533|consen  202 LAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLC  281 (495)
T ss_pred             cCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHH
Confidence            578999999999999999999999999998866555555432221111      11112445678889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 012315          330 HFCHNWGTFILLTWMPTYYNQ  350 (466)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~l~~  350 (466)
                      .++.....+++.+|+|.|+++
T Consensus       282 ~~~~~lv~~~~~~~lpl~l~~  302 (495)
T KOG2533|consen  282 YFFLKLVNYGFSYWLPLYLKS  302 (495)
T ss_pred             HHHHhhccccHHHHHHHHHHc
Confidence            999999999999999999988

>TIGR00896 CynX cyanate transporter

Probab=99.94  E-value=1.2e-24  Score=208.07  Aligned_cols=293  Identities=10%  Similarity=0.084  Sum_probs=210.4

Q ss_pred             hhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 012315          121 VNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVV  200 (466)
Q Consensus       121 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  200 (466)
                      ...++.+|.+.+++|+|..+.|++.+++.++..+++++.|+++||+|||+++.++.++.+++.+.+ ..+  +.+.+++.
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~--~~~~l~~~   93 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP--GTALLFAG   93 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc--cHHHHHHH
Confidence            567788999999999999999999999999999999999999999999999999998888888777 666  88899999


Q ss_pred             HHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhccc--CchHHHHHHhHHHHHHHHHHh
Q 012315          201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF--GWPSVFYSFGSLGTVWFTVWL  278 (466)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~--gw~~~~~~~~~~~~~~~~~~~  278 (466)
                      |++.|++.+...+....++.+++| ++|++++++++...++|..+++.+++.+.+..  +||..|.+.+++.++....  
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~--  170 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLA--  170 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH--
Confidence            999999999888888889999986 68999999999999999999999999888765  3999988776654433222  


Q ss_pred             hhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 012315          279 SKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ--------  350 (466)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------  350 (466)
                       ..++.++++++.+               +..+...++++|+|.+|...+..++....+.....++|.|+++        
T Consensus       171 -~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~  234 (355)
T TIGR00896       171 -WIPQVRRRVAANQ---------------TTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATA  234 (355)
T ss_pred             -HhhhhccccCCCC---------------CCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence             1222211111000               0011234567889998887777777777888888999999977        


Q ss_pred             -----------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhc-c
Q 012315          351 -----------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQ-D  400 (466)
Q Consensus       351 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  400 (466)
                                                   .....+....++....+....+..... ...+.+++.+...+....... +
T Consensus       235 g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~  313 (355)
T TIGR00896       235 GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLR  313 (355)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHh
Confidence                                         111111122222221121211111111 222333344444444444433 3


Q ss_pred             cCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 012315          401 IAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS  436 (466)
Q Consensus       401 ~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g  436 (466)
                      ..+ ++++...++.+..+.++..++|.+.|++.|+.|
T Consensus       314 ~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       314 SRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333 577899999999999999999999999999844

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.94  E-value=1.8e-23  Score=203.20  Aligned_cols=332  Identities=14%  Similarity=0.063  Sum_probs=224.2

Q ss_pred             HHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhccc-----Ccch-HHHHHHHHHHHH
Q 012315          109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-----GGKA-VLGFGVVWWSIA  182 (466)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~-~~~~~~~~~~~~  182 (466)
                      ....++.++.........+|.+.++.|+|.+++|++..+...  .+..+++|+++||+     |||| ++.++.++.+++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            345677778888888889999999999999999999777765  58899999999999     7875 788888888888


Q ss_pred             HHHHHHHhh-hchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc-cCch
Q 012315          183 TALTPVAAK-LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-FGWP  260 (466)
Q Consensus       183 ~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~-~gw~  260 (466)
                      ..+..+.+. .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+.++|.++++.+++++.+. +|||
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~  161 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG  161 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence            887777631 25777777778888888889999999999999999999999999999999999999999999885 5999


Q ss_pred             HHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHH
Q 012315          261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL  340 (466)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (466)
                      ..|++.+++.++..+.. +..+|+++.+++.+ +..+           +...++++++|||.++..++..++........
T Consensus       162 ~~f~i~a~~~l~~~l~~-~~~~e~~~~~~~~~-~~~~-----------~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~  228 (402)
T PRK11902        162 NTYLLMAGLMLAGALTT-LWAPEPEVPARPPR-SLGE-----------AVVGPLRDFFSRRGAWALLLLIVLYKLGDAFA  228 (402)
T ss_pred             HHHHHHHHHHHHHHHHH-HhcCCCcccccccc-hhHH-----------HHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHH
Confidence            99999888776655433 33444332211111 0000           01224677899999887776666655444333


Q ss_pred             HHHHHHHHHH--------------------------------------HHHHHHhHHHH---HHHHHHhcC-CchHHHHH
Q 012315          341 LTWMPTYYNQ--------------------------------------IMQSIGFLGPA---FFLTQLSHV-DSPAMAVL  378 (466)
Q Consensus       341 ~~~~~~~l~~--------------------------------------~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~  378 (466)
                      ..+.+.++.+                                      .....+..+..   +.+...... ++.+....
T Consensus       229 ~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  308 (402)
T PRK11902        229 GSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMAL  308 (402)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            3333334433                                      00001111111   111111121 23333333


Q ss_pred             HHHH----HhhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Q 012315          379 CMAC----SQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAV  454 (466)
Q Consensus       379 ~~~~----~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  454 (466)
                      ...+    .+............+..+..|   ++..++.+....++..+++.++|.+.|..||+..|.+.+.+.+++.++
T Consensus       309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~  385 (402)
T PRK11902        309 AIGIENLCGGMGTAAFVALLMALCNRSFS---ATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLAL  385 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            3222    222222233333344444433   445666677777888877889999999999999999988888877666


Q ss_pred             HHHh
Q 012315          455 WNLF  458 (466)
Q Consensus       455 ~~~~  458 (466)
                      ....
T Consensus       386 ~~~~  389 (402)
T PRK11902        386 LWLM  389 (402)
T ss_pred             HHHH
Confidence            5544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.94  E-value=5.3e-24  Score=206.55  Aligned_cols=340  Identities=11%  Similarity=0.013  Sum_probs=221.4

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHH
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (466)
                      ++.+....++.+.....+.+.+|. +.+++|.++.+.|++.+++.++..+++++.|+++||+|||+.++.+....+++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~   83 (396)
T TIGR00882         4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA   83 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            445555566666667777778777 4567899999999999999999999999999999999999999887766655443


Q ss_pred             HHH---HHh---hhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC
Q 012315          185 LTP---VAA---KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (466)
Q Consensus       185 ~~~---~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g  258 (466)
                      ...   +.+   ....+.+++.+++.|++.+...+....+..+..  ++++..+|......++|.++||.+++.+.+ .+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~  160 (396)
T TIGR00882        84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-ID  160 (396)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cC
Confidence            221   111   002334566688889888888888888777753  344567788888889999999999998865 59


Q ss_pred             chHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHH
Q 012315          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTF  338 (466)
Q Consensus       259 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (466)
                      |+..|++.+++.++..++.+...++++++++ .    ++. .  +.++++.+..+.++++|||.+|...+..++....+.
T Consensus       161 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~-~--~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~  232 (396)
T TIGR00882       161 PQIVFWLGSGFALILMLLLMFAKPKAPSSAT-V----ANA-L--GANASAFSLKLALELFRQRKFWMFVLYVVGVACVYD  232 (396)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCCCchhhh-h----hcc-c--ccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            9999999888877766555444443322110 0    000 0  001111222356788999998877666655555554


Q ss_pred             HHHHHHHHHHHH----------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHH
Q 012315          339 ILLTWMPTYYNQ----------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVL  378 (466)
Q Consensus       339 ~~~~~~~~~l~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (466)
                      ....+.+.|+.+                                        ....++..+.++........++.+..+.
T Consensus       233 ~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~  312 (396)
T TIGR00882       233 VFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVI  312 (396)
T ss_pred             HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence            454455555433                                        1112222222222222233344444444


Q ss_pred             HHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHH-HHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHH
Q 012315          379 CMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGL-SNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN  456 (466)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~-~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  456 (466)
                      ...+.+............+..+..+ +.+++..+. .+....+|+.+++.+.|++.|..||+..|.+.+++.++..++..
T Consensus       313 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       313 LKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            4443333333332233333444444 566776665 67788999999999999999999999999998888777666543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.5e-25  Score=200.43  Aligned_cols=309  Identities=17%  Similarity=0.140  Sum_probs=232.2

Q ss_pred             hccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccc
Q 012315          132 AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVA  211 (466)
Q Consensus       132 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~  211 (466)
                      ++.+-+++++|++.+...+...+.+++.|.+.||+|+|-.+++|+.++..+++++++..  +++++++.|.++|+|.+..
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~--sy~~l~vAR~LQgvgsA~~  176 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN--SYPMLFVARSLQGVGSAFA  176 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc--hhHHHHHHHHHhhhhHHHH
Confidence            44567889999999999999999999999999999999999999999999999999999  9999999999999999999


Q ss_pred             hhhHHHHHhcccCCC-chhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCC
Q 012315          212 MPAMNNILSKWVPVA-ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ  290 (466)
Q Consensus       212 ~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (466)
                      .....++++|.+|++ +|++++|+.-.+.++|.++||+++|.+.+..|.+.+|++.++++++-.++.++..++...++..
T Consensus       177 ~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~  256 (464)
T KOG3764|consen  177 DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDS  256 (464)
T ss_pred             HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCccc
Confidence            999999999999975 5799999999999999999999999999999999999999999999888777766554332211


Q ss_pred             CChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q 012315          291 LRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ--------------------  350 (466)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------------  350 (466)
                       .+                +..++++++++|.++.........+.........++.+..+                    
T Consensus       257 -~~----------------~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y  319 (464)
T KOG3764|consen  257 -TE----------------QGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSY  319 (464)
T ss_pred             -cc----------------cCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccch
Confidence             11                12346778888888776655555555544444445554444                    


Q ss_pred             -------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHH---HHHhh-hhhhhhhhhhhhhcccCcc---
Q 012315          351 -------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCM---ACSQG-TDAFSQSGLYSNHQDIAPR---  404 (466)
Q Consensus       351 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~p~---  404 (466)
                                         .....+++..+.........++...+++-.   .+++. ......|...-.+.....+   
T Consensus       320 ~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~  399 (464)
T KOG3764|consen  320 AIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFN  399 (464)
T ss_pred             hccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccc
Confidence                               334444444444444444444433322222   22222 2222223322222222222   


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHhc
Q 012315          405 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFS  459 (466)
Q Consensus       405 ~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  459 (466)
                      ..|.++++......+|.++||.++|.+.+..|+.+...+.++..++-.-++.+++
T Consensus       400 vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~  454 (464)
T KOG3764|consen  400 VYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLR  454 (464)
T ss_pred             eeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6799999999999999999999999999999999988888877776655554443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.94  E-value=1.8e-24  Score=209.75  Aligned_cols=320  Identities=18%  Similarity=0.174  Sum_probs=219.3

Q ss_pred             HHhhhhhhhhHHhHhhhhhccC--CChhhHHHHHHH-----HHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHH
Q 012315          114 LLCNMDRVNMSIAILPMSAEFN--WNPATVGLIQSS-----FFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (466)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~--~s~~~~g~~~~~-----~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  186 (466)
                      +.++++.+.++...+.+.+++.  .++.+.+.+.+.     ..++..+++++.|+++||+|||+++..+.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            4567777888888787776653  455666665543     333445688999999999999999999999999999999


Q ss_pred             HHHhhhchh--------HHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhh----
Q 012315          187 PVAAKLGLP--------FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI----  254 (466)
Q Consensus       187 ~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~----  254 (466)
                      ++++  +++        .+++.|+++|++.+...+...+++.|++|+++|++..++.+.+..+|.++++.++..+.    
T Consensus        83 ~~~~--~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~  160 (394)
T TIGR00883        83 GLLP--SYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG  160 (394)
T ss_pred             hhCC--ChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9988  654        47888999999999999999999999999999999999999999999999998877654    


Q ss_pred             ----cccCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChh--HHHHHH
Q 012315          255 ----HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP--VWALIV  328 (466)
Q Consensus       255 ----~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  328 (466)
                          +.++||+.|++.+++.++.... ....+|+++.++     +++        +++..+.++++.+++++  ++...+
T Consensus       161 ~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  226 (394)
T TIGR00883       161 DDALLEWGWRIPFLVSAVLVLIGLYL-RRNLEETPVFEK-----AQE--------KHKKKRGPIRETLTKHRKPFLLGLG  226 (394)
T ss_pred             HHHhhccchHHHHHHHHHHHHHHHHH-HHhcCCChhHHH-----HHh--------ccccccCCHHHHHHhchHHHHHHHH
Confidence                3578999998876665544332 222333221100     000        00111234566666655  666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------------------------------------H-HHHHHhHHHHHH---HHHH
Q 012315          329 SHFCHNWGTFILLTWMPTYYNQ-------------------------------------I-MQSIGFLGPAFF---LTQL  367 (466)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~l~~-------------------------------------~-~~~~~~~~~~~~---~~~~  367 (466)
                      ..++..........++|.|+++                                     . ....+.+.....   ....
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~  306 (394)
T TIGR00883       227 LVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL  306 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777777777788889998855                                     1 111111111111   1111


Q ss_pred             hcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHH-HHHHHHHHHHHHHHHHHHhccCc-chhHHHHH
Q 012315          368 SHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLS-NTAGVLAGVFGTAATGYILQHGS-WDDVFKVS  444 (466)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~-~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~  444 (466)
                      ...++.+.......+.++..+...+.......+..| +.|+++.|+. +....+|..++|.+.|.+.|+.| |+..++..
T Consensus       307 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~  386 (394)
T TIGR00883       307 LDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYL  386 (394)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHH
Confidence            122334444444455555555566667777777777 5899999985 45556888899999999999976 77666655


Q ss_pred             HHHHH
Q 012315          445 VGLYL  449 (466)
Q Consensus       445 ~~~~~  449 (466)
                      ..+.+
T Consensus       387 ~~~~l  391 (394)
T TIGR00883       387 AALAL  391 (394)
T ss_pred             HHHHH
Confidence            55443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.94  E-value=6.8e-24  Score=232.27  Aligned_cols=334  Identities=14%  Similarity=0.095  Sum_probs=222.8

Q ss_pred             HHHHHHHHHhhhhhhhhHHhHh-hhhhccCCC-hhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHH---HHHHHHH
Q 012315          107 VLCFSAFLLCNMDRVNMSIAIL-PMSAEFNWN-PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF---GVVWWSI  181 (466)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~---~~~~~~~  181 (466)
                      ...++..+..++....+..+.. .+..+.+.+ ....++..+++.++++++++++|+++||+|||+++..   ..++..+
T Consensus        18 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~   97 (1140)
T PRK06814         18 WTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAA   97 (1140)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHH
Confidence            3334444444444444333333 344444443 3457889999999999999999999999999997643   2222222


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchH
Q 012315          182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS  261 (466)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~  261 (466)
                      ..+.....+  +++.++++|+++|++.++..++..+++.+++|+++|++++|+.+++.++|.++||+++|++.+..||++
T Consensus        98 ~~~~~~~~~--s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~  175 (1140)
T PRK06814         98 LAIYGFHLN--SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVI  175 (1140)
T ss_pred             HHHHHHHHh--hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            223333346  899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHH
Q 012315          262 VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL  341 (466)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (466)
                      .|...+++.++..++ .+..++.+......+..... .        ......++.+.+++.+|...+..++..+....+.
T Consensus       176 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (1140)
T PRK06814        176 LVALLMGIAVLGWLA-SLFIPKTGNAAPDLKIDRNI-I--------RSTITLLKYAKADKRIWLAILGISWFWLVGAVVL  245 (1140)
T ss_pred             HHHHHHHHHHHHHHH-HhhCCCCCCCCCCCeeccch-H--------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence            985444444443333 33344333221111100000 0        0001246778899999999888888888888888


Q ss_pred             HHHHHHHHH-------------------------------------HHHHHHhHHHHHHHHHHhc---------------
Q 012315          342 TWMPTYYNQ-------------------------------------IMQSIGFLGPAFFLTQLSH---------------  369 (466)
Q Consensus       342 ~~~~~~l~~-------------------------------------~~~~~~~~~~~~~~~~~~~---------------  369 (466)
                      +++|.|+++                                     .....+.++.++..+.+..               
T Consensus       246 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  325 (1140)
T PRK06814        246 SQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSI  325 (1140)
T ss_pred             HHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccch
Confidence            899999987                                     0001111111111111111               


Q ss_pred             -----CCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-CcchhHHH
Q 012315          370 -----VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFK  442 (466)
Q Consensus       370 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~g~~~~~~  442 (466)
                           ..+.+.+++..++.+++.+...+...+...+..| +.+|+++|+.++...+|..+++.+.|.+.+. .++...++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~  405 (1140)
T PRK06814        326 LVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIIL  405 (1140)
T ss_pred             hhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence                 1333444444444555555555566667666665 6999999999999999999999999999854 56766666


Q ss_pred             HHHHHHHHHH
Q 012315          443 VSVGLYLVGT  452 (466)
Q Consensus       443 ~~~~~~~~~~  452 (466)
                      +.+.+.++..
T Consensus       406 ~~~~~~~~~~  415 (1140)
T PRK06814        406 FIALANLIVA  415 (1140)
T ss_pred             HHHHHHHHHH
Confidence            5555444433

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.93  E-value=5.2e-24  Score=189.50  Aligned_cols=360  Identities=13%  Similarity=0.161  Sum_probs=252.2

Q ss_pred             CCCchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHH
Q 012315           98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVV  177 (466)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~  177 (466)
                      ..+.+|..............+.....+.+.|.+.+..|.+..+..++......+..+++..+|.++|++|||+.+.+..+
T Consensus        72 fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l  151 (528)
T KOG0253|consen   72 FGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL  151 (528)
T ss_pred             cccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence            34556777777777777777766677777888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhccc
Q 012315          178 WWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF  257 (466)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~  257 (466)
                      ..++...+.+.++  |+..+.+.|.+.|+|.|+ .|...++-.|..|..+|..-+-.. ..+.+|.++...++-.++.++
T Consensus       152 ~t~v~~~is~~sp--nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~  227 (528)
T KOG0253|consen  152 VTGVFGVISGASP--NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF  227 (528)
T ss_pred             HHHHHHHhhcCCC--CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999  999999999999999998 899999999999999999877666 999999999999999999999


Q ss_pred             CchHHHHHHhHHHHHHHHHHhhhcccCCCCCCC-CChHHH-HHH--------------------hhcccC----------
Q 012315          258 GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ-LRPAEK-KLI--------------------VSSCAS----------  305 (466)
Q Consensus       258 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~--------------------~~~~~~----------  305 (466)
                      ||||.....+....+ +....++.+|+|+-.-. .++.+. +..                    ..+.++          
T Consensus       228 gwr~~l~~~~~pl~~-~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~  306 (528)
T KOG0253|consen  228 GWRYLLFTSSTPLMF-AARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKS  306 (528)
T ss_pred             hHHHHHHHHHhHHHH-HHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhh
Confidence            999988877744444 44455666777652211 111100 000                    000000          


Q ss_pred             -CCCCCCcchhhhhcC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Q 012315          306 -KEPVKTIPWGLILSK---PPVWALIVSHFCHNWGTFILLTWMPTYYNQ-------------------------------  350 (466)
Q Consensus       306 -~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------------------------------  350 (466)
                       ..++......+++..   +....++...+...+.+++.........+.                               
T Consensus       307 ~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrd  386 (528)
T KOG0253|consen  307 SAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRD  386 (528)
T ss_pred             ccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHH
Confidence             001112233334331   122233444444455555544433333333                               


Q ss_pred             -------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-c
Q 012315          351 -------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-R  404 (466)
Q Consensus       351 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~  404 (466)
                                               ......+++.+++.+.+....+.....+..+..-.+....+...|.|..|++| .
T Consensus       387 llitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTa  466 (528)
T KOG0253|consen  387 LLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTA  466 (528)
T ss_pred             HHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchh
Confidence                                     23334444555555555444444445555555666667778899999999999 5


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHh--cCCCcc
Q 012315          405 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF--STGEKV  464 (466)
Q Consensus       405 ~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  464 (466)
                      .|+++.|.+..++.+|+++.|.+. ...+. +...+..+.+++++++.++..++  +++.|.
T Consensus       467 vRatgvGtcSsmaRIggI~~p~iA-~~~e~-s~sl~i~vy~~~~ilagIavcffPiEtkGR~  526 (528)
T KOG0253|consen  467 VRATGVGTCSSMARIGGIFSPVIA-MRAEL-STSLPIFVYGALFILAGIAVCFFPIETKGRS  526 (528)
T ss_pred             hhhcchhhhhhHHhhhhhhhhHHH-HHhcc-ceeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence            999999999999999999999998 33333 33344455566666666665555  555554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.3e-22  Score=181.47  Aligned_cols=333  Identities=14%  Similarity=0.192  Sum_probs=247.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHH
Q 012315          104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT  183 (466)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  183 (466)
                      ..+..+.+..+----....+++.++.+.+++|+|.+..|++.++..+...+.+++..++.+|+|.++.+..++++.+++.
T Consensus        12 ~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~   91 (395)
T COG2807          12 LLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGI   91 (395)
T ss_pred             HHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            33333333333333345678889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhccc-CchHH
Q 012315          184 ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GWPSV  262 (466)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-gw~~~  262 (466)
                      ++-...   +.+.++.+-.+.|.|.+..+...+.++-+.|| ++-+..+|+|....++|..+++.+.-.+.++. |||..
T Consensus        92 ~iR~~~---~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~a  167 (395)
T COG2807          92 LIRSLG---GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGA  167 (395)
T ss_pred             HHHhcc---cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHH
Confidence            988766   46778889999999999999999999999996 78899999999999999999999999888876 79999


Q ss_pred             HHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHH
Q 012315          263 FYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT  342 (466)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (466)
                      ..+.+..+++.++.++.-..+ ++ ...  ...              +..+-..++|+|.-|.+.+.+.+++..++....
T Consensus       168 L~~WAl~allAl~~WlPq~~r-~~-~~~--~~~--------------~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~  229 (395)
T COG2807         168 LGFWALLALLALLIWLPQALR-EQ-AAS--IAT--------------KLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIG  229 (395)
T ss_pred             HHHHHHHHHHHHHHHhhhccc-cc-ccc--ccc--------------ccccccccccCchhHHHHHHHHhhHHHHHHHHH
Confidence            999999988877765543211 10 000  000              011223578999999999999999999999999


Q ss_pred             HHHHHHHH---------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 012315          343 WMPTYYNQ---------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACS  383 (466)
Q Consensus       343 ~~~~~l~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (466)
                      |+|.++.|                                       .+....+...+.+.+.+.....++..  .++++
T Consensus       230 WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw--~~llG  307 (395)
T COG2807         230 WLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW--ALLLG  307 (395)
T ss_pred             HHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH--HHHHh
Confidence            99999999                                       11111111111222222222222222  23333


Q ss_pred             hhhhhhhhhhhhhh--hcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHHHHHhcC
Q 012315          384 QGTDAFSQSGLYSN--HQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLFST  460 (466)
Q Consensus       384 ~~~~~~~~~~~~~~--~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~  460 (466)
                      .+ .+..++.....  .....|+..+...|+.+.++++-...||.+.|++.|. ++|+..+...+.+.++..+.-+...|
T Consensus       308 ~G-~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a~r  386 (395)
T COG2807         308 LG-QGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRAGR  386 (395)
T ss_pred             Cc-cchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhcch
Confidence            33 22333333333  2334457899999999999999999999999999999 88998888877777666666555544


Q ss_pred             C
Q 012315          461 G  461 (466)
Q Consensus       461 ~  461 (466)
                      .
T Consensus       387 ~  387 (395)
T COG2807         387 N  387 (395)
T ss_pred             h
Confidence            3

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.92  E-value=2.2e-22  Score=198.55  Aligned_cols=353  Identities=14%  Similarity=0.152  Sum_probs=227.1

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHhH-hhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcc-cCcchHHHHHHHHH
Q 012315          102 RWFIVVLCFSAFLLCNMDRVNMSIAI-LPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWW  179 (466)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~  179 (466)
                      +++.++.++...+...+..+.....+ .++.+++|++..+.+++.+.+.....+..+++|+++|| +|||+++.++.+++
T Consensus        12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~   91 (489)
T PRK10207         12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVL   91 (489)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHH
Confidence            33445555556666666666555554 45678899999999999999998888899999999999 99999999999999


Q ss_pred             HHHHHHHHHHhhhchhH-HHHHHHHHHhhhccchhhHHHHHhcccCCC--chhHHHHHHHHHHHhHHHHHhhhHHHhhcc
Q 012315          180 SIATALTPVAAKLGLPF-LLVVRVFMGIGEGVAMPAMNNILSKWVPVA--ERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (466)
Q Consensus       180 ~~~~~~~~~~~~~~~~~-l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~  256 (466)
                      +++.++++++.  +... ++++|+++|+|.|...+...+++.|.+|++  +|++++++++.+.++|..+||.+++++.++
T Consensus        92 ~~g~~~~~~~~--~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~  169 (489)
T PRK10207         92 AIGYFMTGMSL--LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK  169 (489)
T ss_pred             HHHHHHHHHhc--cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999887  5443 557899999999999999999999999876  457899999999999999999999999999


Q ss_pred             cCchHHHHHHhHHHHHHHHHHhhhcccCCCC---CCCCChHHH-HHH------------hhc-ccCCCCC----------
Q 012315          257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE---DPQLRPAEK-KLI------------VSS-CASKEPV----------  309 (466)
Q Consensus       257 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~------------~~~-~~~~~~~----------  309 (466)
                      +|||+.|++.++..++. ++.+...++..++   ++..++.+. ...            ... .+..+..          
T Consensus       170 ~gw~~~F~i~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  248 (489)
T PRK10207        170 FGYSVTYNLCGAGLIIA-LLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIV  248 (489)
T ss_pred             hChHHHHHHHHHHHHHH-HHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99999999865433333 3222222211111   010000000 000            000 0000000          


Q ss_pred             -------CCcchhhhhcChhHHHHHHH--HHHHHHHHHHHHHHHHHHHHH------------------------------
Q 012315          310 -------KTIPWGLILSKPPVWALIVS--HFCHNWGTFILLTWMPTYYNQ------------------------------  350 (466)
Q Consensus       310 -------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~------------------------------  350 (466)
                             +.....+++|+|.+....+.  ..+....+....+.++.|.++                              
T Consensus       249 ~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl  328 (489)
T PRK10207        249 VTIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPI  328 (489)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHH
Confidence                   00000134555554433222  333333444444555555543                              


Q ss_pred             ------------------HHHHHHhHHHHHHHHH-------Hhc---CCchHHHHHHHHHHhhhhhhhhhhhhhhhcccC
Q 012315          351 ------------------IMQSIGFLGPAFFLTQ-------LSH---VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIA  402 (466)
Q Consensus       351 ------------------~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (466)
                                        ....+++++.++.++.       ...   ..+.++.+...++.+.+.....+.......+..
T Consensus       329 ~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~a  408 (489)
T PRK10207        329 LAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALV  408 (489)
T ss_pred             HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence                              0122333333322211       111   123455566666667777777777676666666


Q ss_pred             c-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcc----------CcchhHHHHHHHHHHHHHHHHHH
Q 012315          403 P-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH----------GSWDDVFKVSVGLYLVGTAVWNL  457 (466)
Q Consensus       403 p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~----------~g~~~~~~~~~~~~~~~~~~~~~  457 (466)
                      | +.+|.++|+.+....+|+.++..+.+.....          ..+...|...++..+++.+++++
T Consensus       409 P~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~  474 (489)
T PRK10207        409 PQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL  474 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            6 6999999999999999999999888766321          13556666666655555554444

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.92  E-value=1.5e-22  Score=222.58  Aligned_cols=320  Identities=17%  Similarity=0.117  Sum_probs=212.5

Q ss_pred             hhHHhHhhhhhccCCCh--hhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHH---HHhhhchhH
Q 012315          122 NMSIAILPMSAEFNWNP--ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP---VAAKLGLPF  196 (466)
Q Consensus       122 ~~~~~~~~~~~~~~~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~  196 (466)
                      ....+.+.+..+++.+.  ...+++.+++.++..++++++|+++||+|||++++++.++..++.++..   ..+  +++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~--~~~~  105 (1146)
T PRK08633         28 HKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLG--WFWL  105 (1146)
T ss_pred             HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHc--cHHH
Confidence            34444555666666543  4479999999999999999999999999999999988877665555443   345  7899


Q ss_pred             HHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc--------c-CchHHHHHHh
Q 012315          197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--------F-GWPSVFYSFG  267 (466)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~--------~-gw~~~~~~~~  267 (466)
                      ++++|++.|++.+...+...+++.|++|+++|++++|+.+.+.++|.++|+.+++++.+.        + +|.+.+.+..
T Consensus       106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  185 (1146)
T PRK08633        106 AFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVL  185 (1146)
T ss_pred             HHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999875        2 3444444444


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          268 SLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY  347 (466)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (466)
                      +...+..++..+..++.+.......+.+..       .........++.+++++.++...+..++..........++|.|
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (1146)
T PRK08633        186 LAVAVLGLIFAYRLPKVPAAAPEVFDKKKY-------LFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAY  258 (1146)
T ss_pred             HHHHHHHHHHHhcCcCCCCCCccccccccc-------ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            333333333333445443322111000000       0000012246677888888887777777666666777777777


Q ss_pred             HHH--------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhh
Q 012315          348 YNQ--------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAF  389 (466)
Q Consensus       348 l~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (466)
                      +.+                                      ....++.++.++.+..+....+.+..++..++.+++.+.
T Consensus       259 ~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  338 (1146)
T PRK08633        259 AKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGL  338 (1146)
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            755                                      111112222222222222233444444444555555555


Q ss_pred             hhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-CcchhHHHHHHHHHHH
Q 012315          390 SQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLV  450 (466)
Q Consensus       390 ~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~g~~~~~~~~~~~~~~  450 (466)
                      ..+...++..+..| +.+|+++|+.+++..+|.++++.+++.+... .++...+++.+.+.++
T Consensus       339 ~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        339 FIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             hhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            55566666666665 6899999999999999998888887776543 3444455554444433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.92  E-value=4.4e-22  Score=193.62  Aligned_cols=330  Identities=12%  Similarity=0.045  Sum_probs=212.1

Q ss_pred             HHHHHHhhhhhhhhHHhH-hhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCc-chHHHHHHHHHHHHHHHHH
Q 012315          110 FSAFLLCNMDRVNMSIAI-LPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG-KAVLGFGVVWWSIATALTP  187 (466)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~~~~  187 (466)
                      .+.+++.+....++.+.+ +.+.+++|++..++|++.+++.++..++++++|+++||+|+ |+++.++.++.+++..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~   87 (418)
T TIGR00889         8 KFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA   87 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            444555556666665554 44778899999999999999999999999999999999965 7788888888888888888


Q ss_pred             HHhhhchhHHHHHHHHHHhhhccchhhHHHHHh--------cccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCc
Q 012315          188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILS--------KWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (466)
Q Consensus       188 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw  259 (466)
                      +.+  +++.+++.+++.|++.+...+...++..        |......|.+..|      .+|.++||.+++.+....+|
T Consensus        88 ~~~--~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~  159 (418)
T TIGR00889        88 QVT--TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSN  159 (418)
T ss_pred             Hhc--CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchh
Confidence            887  8999999999999987766666555432        2222233444444      47889999999887433335


Q ss_pred             hHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHH
Q 012315          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI  339 (466)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (466)
                      . +|++.+++.++..+. .+..||.++.+++.+...++           ....+.++++|+|.++.+.+..++.......
T Consensus       160 ~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~-----------~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~  226 (418)
T TIGR00889       160 I-QLYITAGSSALLGVF-ALTLPDIPVAKSTAKMSIKV-----------MLGLDAFILFKNKRMAIFFFFSMLLGAPLQI  226 (418)
T ss_pred             H-HHHHHHHHHHHHHHH-HhcCCCCCCCccccccCHHH-----------HhhhhHHHHhcCCCeeeHHHHHHHHHhHHHH
Confidence            4 455556555554443 33455543221111100000           0011345678888887777666665554444


Q ss_pred             HHHHHHHHHHH--------------------------------------------HHHHHHhHHHHHHHHHHhcC-Cc--
Q 012315          340 LLTWMPTYYNQ--------------------------------------------IMQSIGFLGPAFFLTQLSHV-DS--  372 (466)
Q Consensus       340 ~~~~~~~~l~~--------------------------------------------~~~~~~~~~~~~~~~~~~~~-~~--  372 (466)
                      ...+.+.|+++                                            .....+.+...+........ .+  
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~  306 (418)
T TIGR00889       227 TNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYF  306 (418)
T ss_pred             HHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchh
Confidence            44444544422                                            22223333333322222221 11  


Q ss_pred             -hHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHH-HHHHHHHHHHHHHHHHHhcc------CcchhHHHH
Q 012315          373 -PAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSN-TAGVLAGVFGTAATGYILQH------GSWDDVFKV  443 (466)
Q Consensus       373 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~-~~~~~g~~i~~~~~g~l~~~------~g~~~~~~~  443 (466)
                       .+..++..++.+...+...+....+..+..| +.|++++|+.+ ....+|.+++|.+.|++.|+      .||+..|.+
T Consensus       307 ~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~  386 (418)
T TIGR00889       307 GYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLF  386 (418)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHH
Confidence             2333334444444445555665666666666 69999999997 56789999999999999998      358889988


Q ss_pred             HHHHHHHHHHHHHHhcC
Q 012315          444 SVGLYLVGTAVWNLFST  460 (466)
Q Consensus       444 ~~~~~~~~~~~~~~~~~  460 (466)
                      .+++.+++.+++.++.+
T Consensus       387 ~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       387 FAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            88877777666665543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.92  E-value=1.8e-22  Score=189.96  Aligned_cols=305  Identities=12%  Similarity=0.103  Sum_probs=215.9

Q ss_pred             hhhhhHHhHhhhhhccCCChhh-HHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHH
Q 012315          119 DRVNMSIAILPMSAEFNWNPAT-VGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFL  197 (466)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l  197 (466)
                      .+...+...|.+.+++|+|..+ .|.+.+++..++.++.++.|+++||+|.|+++.++.+..++..++.++++  +++.+
T Consensus        41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~--Sl~~L  118 (511)
T TIGR00806        41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT--SVWHM  118 (511)
T ss_pred             hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            3677888899999999999999 99999999999999999999999999999999999999999999999999  89999


Q ss_pred             HHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHH--hHHHHHHHH
Q 012315          198 LVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF--GSLGTVWFT  275 (466)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~--~~~~~~~~~  275 (466)
                      .+.|++.|++.|... +...++..|+|+++|+++.|+.+.+..+|.+++++++++ +..+|||+-+.+.  .+.+.+...
T Consensus       119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~  196 (511)
T TIGR00806       119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSV  196 (511)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHH
Confidence            999999999999998 999999999999999999999999999999999999999 5568998755432  222223333


Q ss_pred             HHhhhcccCCCC---CCCC--C---hHHHHHHhhccc--CC---CCCCC-------cchhhhhcChhHHHHHHHHHHHHH
Q 012315          276 VWLSKAHSSPAE---DPQL--R---PAEKKLIVSSCA--SK---EPVKT-------IPWGLILSKPPVWALIVSHFCHNW  335 (466)
Q Consensus       276 ~~~~~~~~~~~~---~~~~--~---~~~~~~~~~~~~--~~---~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  335 (466)
                      ++.++.|..++.   ++..  +   ..+.+....+..  ..   +....       ..+++..+|+.+..-.+-..+...
T Consensus       197 ~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~  276 (511)
T TIGR00806       197 FLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSA  276 (511)
T ss_pred             HHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhh
Confidence            333444533221   0000  0   000000000000  00   00000       123445667776655555555556


Q ss_pred             HHHHHHHHHHHHHHH---------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHH
Q 012315          336 GTFILLTWMPTYYNQ---------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMA  376 (466)
Q Consensus       336 ~~~~~~~~~~~~l~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (466)
                      ++..+.+|....-.+                                       ....+..++-+.+++++...++.|..
T Consensus       277 g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~  356 (511)
T TIGR00806       277 GYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVL  356 (511)
T ss_pred             HHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHH
Confidence            666555555554443                                       33333334444456666777888888


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhc-ccCccchhhHHHHHHHHHHHHHHHHHHH
Q 012315          377 VLCMACSQGTDAFSQSGLYSNHQ-DIAPRYSGVLLGLSNTAGVLAGVFGTAA  427 (466)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~g~~~g~~~~~~~~g~~i~~~~  427 (466)
                      ++..++....+.+..+....... ++..+..|..+|+++++..+-..+-..+
T Consensus       357 Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~i  408 (511)
T TIGR00806       357 YVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAV  408 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEE
Confidence            88888877777776665555444 4445677999999988877666554443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.92  E-value=1.5e-21  Score=189.06  Aligned_cols=333  Identities=12%  Similarity=0.084  Sum_probs=227.9

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHH--HHHHHHHHHHHHhhhh-hhhcccCcchHHHHHHHHH-HH
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLI--QSSFFWGYLLTQIAGG-IWADTVGGKAVLGFGVVWW-SI  181 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~~~~~~~~~~~~~~~g-~l~dr~g~r~~~~~~~~~~-~~  181 (466)
                      +..+...++.++.......+.+|.+.++.|.|.+++|++  .++..+...+.+++++ +..||+||||..++...+. ++
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            456677788889988999999999999999999999997  4677888888888884 4799999999876555332 22


Q ss_pred             HHHHHH-HHhhhc-hhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCc
Q 012315          182 ATALTP-VAAKLG-LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (466)
Q Consensus       182 ~~~~~~-~~~~~~-~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw  259 (466)
                      +..... +....+ ...++...++.++..+...+...++..|..++++++...+....+..+|.++|+...+++.+.+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw  162 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ  162 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            222222 111102 333444455566777778888888999999888889899999999999999999999999999999


Q ss_pred             hHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHH
Q 012315          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI  339 (466)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (466)
                      |..|++.+++.++..+..++..++++++++ .++.               +..++++++|+|.++...+..++.......
T Consensus       163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~-~~~~---------------~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~  226 (390)
T TIGR02718       163 RPAFLLVACVPLASLVCVLWLKDRAVASPE-APLA---------------RRASLFRFFRRPLAWSLLALALLSAMTAVS  226 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcCccc-cchh---------------hHHHHHHHHcCcCHHHHHHHHHHHHHHHHH
Confidence            999999998887766655444443321111 0000               012466788999988888888888888888


Q ss_pred             HHHHHHHHHHH-------------------------------------HHHHHHhHHH-HHHHHHH--hc---CCchHHH
Q 012315          340 LLTWMPTYYNQ-------------------------------------IMQSIGFLGP-AFFLTQL--SH---VDSPAMA  376 (466)
Q Consensus       340 ~~~~~~~~l~~-------------------------------------~~~~~~~~~~-~~~~~~~--~~---~~~~~~~  376 (466)
                      ...+.+.|+++                                     .....+.... ...+...  ..   .......
T Consensus       227 ~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (390)
T TIGR02718       227 GFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVA  306 (390)
T ss_pred             HHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHH
Confidence            88889999888                                     0001111111 0000000  00   1111222


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhh-cccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Q 012315          377 VLCMACSQGTDAFSQSGLYSNH-QDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAV  454 (466)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~-~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  454 (466)
                      .....+..+..+...+..+... ....+ +.+|+.+++.+...++|..++|.+.|.+.|..||+..|.+.+++.+++.+.
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       307 WSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            2222222233344444444443 33445 689999999999999999999999999999999999998887777665543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.92  E-value=1.5e-22  Score=181.53  Aligned_cols=320  Identities=17%  Similarity=0.105  Sum_probs=209.2

Q ss_pred             hhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhh
Q 012315          129 PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGE  208 (466)
Q Consensus       129 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~  208 (466)
                      ...+..+.+..-.|.+.+.+.+...+.++.+|.++||+|||+++.+|.+..++...+.+++.  |+..+++.|++.|+..
T Consensus        58 a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~--~F~afv~aR~l~Gi~k  135 (451)
T KOG2615|consen   58 AIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR--NFAAFVLARFLGGIFK  135 (451)
T ss_pred             hhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhcc
Confidence            34444444566679999999999999999999999999999999999999999999999999  9966777799999998


Q ss_pred             ccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc---ccC-chHHH--HHHhHHHHHHHHHHhhhcc
Q 012315          209 GVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH---RFG-WPSVF--YSFGSLGTVWFTVWLSKAH  282 (466)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~---~~g-w~~~~--~~~~~~~~~~~~~~~~~~~  282 (466)
                      |- .....++++|.+++|+|+++++..+..+++|.++||.++|++..   ..| +..++  ++..++.........++.|
T Consensus       136 gn-l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lp  214 (451)
T KOG2615|consen  136 GN-LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLP  214 (451)
T ss_pred             Cc-hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCC
Confidence            74 67899999999999999999999999999999999999999987   333 22222  1222222221222334445


Q ss_pred             cCCCCCCCCCh-HHHHHHhhcccCCCCCCCcchhhhhcChhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 012315          283 SSPAEDPQLRP-AEKKLIVSSCASKEPVKTIPWGLILSKPPVW-------ALIVSHFCHNWGTFILLTWMPTYYNQ----  350 (466)
Q Consensus       283 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~----  350 (466)
                      |+-+.+++.++ .+..+..+..++..+.+...--..+||+...       .+.+..+.+...+.........+-.+    
T Consensus       215 ETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~  294 (451)
T KOG2615|consen  215 ETLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGY  294 (451)
T ss_pred             ccccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCC
Confidence            54332222211 0011111111000000000011233444322       22233344444443333333333111    


Q ss_pred             -----------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhhhhhhhh
Q 012315          351 -----------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLY  395 (466)
Q Consensus       351 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (466)
                                                         ......+..+.-.++.+........+.....+-.+......+...
T Consensus       295 ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt  374 (451)
T KOG2615|consen  295 SSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLT  374 (451)
T ss_pred             ChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHH
Confidence                                               222333333344444455556666777777777778888888888


Q ss_pred             hhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-CcchhHHHHHHHHHHHH
Q 012315          396 SNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVG  451 (466)
Q Consensus       396 ~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~g~~~~~~~~~~~~~~~  451 (466)
                      ..+....| ++||+++|+....+.++.++||.+.|.+..+ -+-+.++...+.+.++.
T Consensus       375 ~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~~  432 (451)
T KOG2615|consen  375 SLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLIP  432 (451)
T ss_pred             HHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHHH
Confidence            88888887 5999999999999999999999999999887 34444444444444444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.91  E-value=1.5e-22  Score=205.17  Aligned_cols=244  Identities=16%  Similarity=0.229  Sum_probs=190.5

Q ss_pred             HHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHH
Q 012315          107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (466)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  186 (466)
                      +...+..+............++.+.++|+++..+.|++.+.+.+++.++.++.|++.||+|||+++.++.++++++.+++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            44444666667777888888999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHh-------------------------------------------------hhchhHHHHHHHHHHhhhccchhhHHH
Q 012315          187 PVAA-------------------------------------------------KLGLPFLLVVRVFMGIGEGVAMPAMNN  217 (466)
Q Consensus       187 ~~~~-------------------------------------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~  217 (466)
                      ++.+                                                 ...+..++++|+++|+|.+..++...+
T Consensus       116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~  195 (633)
T TIGR00805       116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS  195 (633)
T ss_pred             hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence            8763                                                 002456778999999999999999999


Q ss_pred             HHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhccc----------------------CchHHHHHHhHHHHHHHH
Q 012315          218 ILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF----------------------GWPSVFYSFGSLGTVWFT  275 (466)
Q Consensus       218 ~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~----------------------gw~~~~~~~~~~~~~~~~  275 (466)
                      ++.|++|+++|++++++++.+..+|.++|+++++++.+.+                      +|+..|++.+++.++..+
T Consensus       196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v  275 (633)
T TIGR00805       196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI  275 (633)
T ss_pred             hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999887643                      277788888888777666


Q ss_pred             HHhhhcccCCCCCCCCC--hHHHHHHhhcccCC-C------CCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          276 VWLSKAHSSPAEDPQLR--PAEKKLIVSSCASK-E------PVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (466)
Q Consensus       276 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (466)
                      .++++.++.|+.....+  ..+.+...+..++. .      .+....++.+++||.++...+..++.....+++.+|+|.
T Consensus       276 ~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~  355 (633)
T TIGR00805       276 PFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPK  355 (633)
T ss_pred             HHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55544443332211111  01100000000000 0      001124667899999999999999999999999999999


Q ss_pred             HHHH
Q 012315          347 YYNQ  350 (466)
Q Consensus       347 ~l~~  350 (466)
                      |+++
T Consensus       356 yl~~  359 (633)
T TIGR00805       356 YLEN  359 (633)
T ss_pred             HHHH
Confidence            9987

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.91  E-value=5e-22  Score=195.49  Aligned_cols=310  Identities=15%  Similarity=0.102  Sum_probs=208.3

Q ss_pred             hhhhhhhHHh-HhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcc----cCcch-HHHHHHHHHHHHHHHHHHHh
Q 012315          117 NMDRVNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGKA-VLGFGVVWWSIATALTPVAA  190 (466)
Q Consensus       117 ~~~~~~~~~~-~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~-~~~~~~~~~~~~~~~~~~~~  190 (466)
                      ......+... .+.+.+++|+++.++|++.++..+..++..++.|+++||    +|||| .++.+.+..+++.+++.+.+
T Consensus        12 ~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~   91 (437)
T TIGR00792        12 NFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTP   91 (437)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCC
Confidence            3334444443 455788899999999999999999999999999999998    67744 67788888888888777665


Q ss_pred             hh----chhHHHHHHHHHHhhhccchhhHHHHHhccc-CCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc-------ccC
Q 012315          191 KL----GLPFLLVVRVFMGIGEGVAMPAMNNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-------RFG  258 (466)
Q Consensus       191 ~~----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~-------~~g  258 (466)
                      +.    ..+.+++.+++.+++.+.......++..+.. ++++|++..++.+.+..+|..+++.+.+.+..       ..|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g  171 (437)
T TIGR00792        92 DFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG  171 (437)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence            21    1345666788888888887888888888887 46899999999999999988887776655542       468


Q ss_pred             chHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHH
Q 012315          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTF  338 (466)
Q Consensus       259 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (466)
                      |+..+.+.+++.++..+...+..+|++++.+..+            +++......++++++||.++...+..++......
T Consensus       172 ~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  239 (437)
T TIGR00792       172 WFMFALVLALIGVVSLIICFFGTKERYSEIPKNI------------EKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFN  239 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccc------------ccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            9999999888887776666555555432111100            0001112246678899998887777666665555


Q ss_pred             HHHHHHHHHHHH------------------------------------HHHHHHhHHHHHHHHHHhcC-CchHHHHHHHH
Q 012315          339 ILLTWMPTYYNQ------------------------------------IMQSIGFLGPAFFLTQLSHV-DSPAMAVLCMA  381 (466)
Q Consensus       339 ~~~~~~~~~l~~------------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  381 (466)
                      ....+.+.|.+.                                    .....+.++.++........ ++.+...+..+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (437)
T TIGR00792       240 IKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLII  319 (437)
T ss_pred             HHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence            443333333221                                    12222222222222222221 23344444445


Q ss_pred             HHhhhhhhhhhhhhhhhcccC--------ccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcch
Q 012315          382 CSQGTDAFSQSGLYSNHQDIA--------PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWD  438 (466)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~--------p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~  438 (466)
                      +.+++.+...+..++...+..        ++.+|.+.|+.+....+|..+++.+.|.+.+..||.
T Consensus       320 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       320 LAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            555555555566666655543        346899999999999999999999999999887763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.91  E-value=1.2e-21  Score=187.30  Aligned_cols=217  Identities=13%  Similarity=0.038  Sum_probs=163.8

Q ss_pred             hhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhccc-----CcchH-HHHHHHHHHHHHHHHHHHhh-h
Q 012315          120 RVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-----GGKAV-LGFGVVWWSIATALTPVAAK-L  192 (466)
Q Consensus       120 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~-~~~~~~~~~~~~~~~~~~~~-~  192 (466)
                      ....++..|.+.+++|+|.+++|+.... .+...+ .+++|+++||+     ||||. ++.+.++.++...+.++.+. .
T Consensus         4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~   81 (356)
T TIGR00901         4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST   81 (356)
T ss_pred             chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence            3456678899999999999999999766 455554 99999999998     89886 46777777777766666631 2


Q ss_pred             chhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC--------chHHHH
Q 012315          193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG--------WPSVFY  264 (466)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g--------w~~~~~  264 (466)
                      +.+.+....++.+++.+...+...+++.|++|+++|+++.++...+.++|.++++.+++.+.+..|        ||..|+
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~  161 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFF  161 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHH
Confidence            566677777888888888889999999999999999999999999999999999999999988888        999999


Q ss_pred             HHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChh---HHHHHHHHHHHHHHHHHHH
Q 012315          265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP---VWALIVSHFCHNWGTFILL  341 (466)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  341 (466)
                      +.+++.++..+..++..+|+.+.++. ++++.+.           ....++++++++.   ++.+.+..++.........
T Consensus       162 i~ai~~l~~~~~~~~~~~e~~~~~~~-~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (356)
T TIGR00901       162 WTALLILPGLLVTLFLAKEPQEDASV-PKPLTQA-----------VLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAAT  229 (356)
T ss_pred             HHHHHHHHHHHHHHHhccCCCccccc-chhHHHH-----------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence            88887776555544444543221111 1111100           0124566777775   6666667777777788888


Q ss_pred             HHHHHHHHH
Q 012315          342 TWMPTYYNQ  350 (466)
Q Consensus       342 ~~~~~~l~~  350 (466)
                      .+.|.|+++
T Consensus       230 ~~~~~~l~~  238 (356)
T TIGR00901       230 VLTTLFLLD  238 (356)
T ss_pred             HHHHHHHHH
Confidence            899998876

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.90  E-value=6.1e-21  Score=189.31  Aligned_cols=167  Identities=18%  Similarity=0.222  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcc-cCcchHHHHHHHHHHHHH
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWWSIAT  183 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~  183 (466)
                      +..+++..+...+..+.....++. +.+++|++..+.+++.+.+........+++|+++|| +|||+.+.++.++.+++.
T Consensus        23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~  102 (500)
T PRK09584         23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY  102 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            344455555555555555555555 668899999999999888877767777899999999 599999999999999999


Q ss_pred             HHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCc--hhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchH
Q 012315          184 ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE--RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS  261 (466)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~  261 (466)
                      +++++++. +.+.++++++++|++.|...+...+++.+++|+++  |+.++++++.+.++|..+||.+++++.+++|||+
T Consensus       103 ~l~~~~~~-~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~  181 (500)
T PRK09584        103 ALVAWSGH-DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSV  181 (500)
T ss_pred             HHHHHhcc-cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHH
Confidence            88888741 45667778999999999989999999999998643  4568899999999999999999999999999999


Q ss_pred             HHHHHhHHHHHH
Q 012315          262 VFYSFGSLGTVW  273 (466)
Q Consensus       262 ~~~~~~~~~~~~  273 (466)
                      .|.+.++..++.
T Consensus       182 ~F~i~~i~~~i~  193 (500)
T PRK09584        182 AFALSVVGMLIT  193 (500)
T ss_pred             HHHHHHHHHHHH
Confidence            999877544443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.90  E-value=2.9e-20  Score=179.89  Aligned_cols=353  Identities=16%  Similarity=0.076  Sum_probs=241.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhc----ccCcchHHHHH-HH
Q 012315          103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD----TVGGKAVLGFG-VV  177 (466)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~-~~  177 (466)
                      |+++.+... .+...+.+....+..+++.+++|.+....+++..+..+...+.+++.|+++|    |+|||+.++++ .+
T Consensus         4 ~~li~~~~~-~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~   82 (477)
T TIGR01301         4 RKLLRVASV-AAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA   82 (477)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH
Confidence            333433333 3333455666677777788999999999999999999999999999999999    59999988864 66


Q ss_pred             HHHHHHHHHHHHhhhch-----------------hHHHHHHHHHHhhhccchhhHHHHHhcccCCCch--hHHHHHHHHH
Q 012315          178 WWSIATALTPVAAKLGL-----------------PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAER--SRSLALVYSG  238 (466)
Q Consensus       178 ~~~~~~~~~~~~~~~~~-----------------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~  238 (466)
                      ...++.+++++++  +.                 +.++++..+..++.....+...++++|.+|+++|  +.++++.+.+
T Consensus        83 ~~~~~l~ll~~~~--~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~  160 (477)
T TIGR01301        83 LVAFAVILIGFAA--DIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFF  160 (477)
T ss_pred             HHHHHHHHHHhCc--hhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH
Confidence            6667777777765  32                 2333344455567777888899999999998765  6899999999


Q ss_pred             HHhHHHHHhhhHHHh--hccc-------------CchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcc
Q 012315          239 MYLGSVTGLAFSPFL--IHRF-------------GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSC  303 (466)
Q Consensus       239 ~~~g~~ig~~~~~~l--~~~~-------------gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (466)
                      .++|.++|+.++++.  .+.+             +.+..|++.+++.++..++..+..+|.+...++..+++  +.   .
T Consensus       161 ~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~--~~---~  235 (477)
T TIGR01301       161 MAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS--EA---A  235 (477)
T ss_pred             HHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh--hc---c
Confidence            999999999999875  2211             56889999888888877777777777654222111000  00   0


Q ss_pred             cCCCCCCCcchhhhhc-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Q 012315          304 ASKEPVKTIPWGLILS-----KPPVWALIVSHFCHNWGTFILLTWMPTYYNQ----------------------------  350 (466)
Q Consensus       304 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------------------------  350 (466)
                      +.++......++++++     .|.+|.+++..++..++++.+..|.+.|..+                            
T Consensus       236 ~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s  315 (477)
T TIGR01301       236 PPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNS  315 (477)
T ss_pred             cccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHH
Confidence            0111111122333333     3568899999999999999999888888764                            


Q ss_pred             ---------------------HHHHHHhHHHHHHHHHHhcCCc---------------------hHHHHHHHHHHhhhhh
Q 012315          351 ---------------------IMQSIGFLGPAFFLTQLSHVDS---------------------PAMAVLCMACSQGTDA  388 (466)
Q Consensus       351 ---------------------~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~  388 (466)
                                           ..-..+.++.++.+....+...                     .+..++.+...++..+
T Consensus       316 ~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A  395 (477)
T TIGR01301       316 VVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLA  395 (477)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHH
Confidence                                 0101221112222111111000                     2455556666667777


Q ss_pred             hhhhhhhhhhcccCc---cchhhHHHHHHHHHHHHHHHHHHHHHHHhcc--CcchhHHHHHHHHHHHHHHHHHHhcCCCc
Q 012315          389 FSQSGLYSNHQDIAP---RYSGVLLGLSNTAGVLAGVFGTAATGYILQH--GSWDDVFKVSVGLYLVGTAVWNLFSTGEK  463 (466)
Q Consensus       389 ~~~~~~~~~~~~~~p---~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (466)
                      ......++...+..+   +..|..+|+.|.+..+.+.+.....|.+.+.  .+...++.+.++.++++.+...+.-++.+
T Consensus       396 ~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       396 ITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             HHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            777777887777665   4679999999999999999999999996665  34557778888888888877776655544

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.90  E-value=1.3e-20  Score=184.63  Aligned_cols=169  Identities=14%  Similarity=0.152  Sum_probs=138.0

Q ss_pred             HHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHH
Q 012315          109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV  188 (466)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  188 (466)
                      +++.....++........++.+..++|- .....|+.+...++..++.++.|+++|.+|||..++.+.++..+|.+.++-
T Consensus        49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at  127 (599)
T PF06609_consen   49 FSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT  127 (599)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence            3333443444455556778889999985 477889999999999999999999999999999999999999999999999


Q ss_pred             HhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhH
Q 012315          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS  268 (466)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~  268 (466)
                      ++  |...++.+..+.|+|.|... .....++|..|.|.|+...++.....-+...+++.++..+..+.+|||.|++.++
T Consensus       128 A~--~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i  204 (599)
T PF06609_consen  128 AQ--NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFII  204 (599)
T ss_pred             CC--cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHH
Confidence            99  99999999999999977655 4566689999999999888877766666666788888777767789999999988


Q ss_pred             HHHHHHHHHhhhc
Q 012315          269 LGTVWFTVWLSKA  281 (466)
Q Consensus       269 ~~~~~~~~~~~~~  281 (466)
                      ...+.++..+++.
T Consensus       205 ~~~i~~vl~~~fY  217 (599)
T PF06609_consen  205 WSGIALVLIFFFY  217 (599)
T ss_pred             HHHHHHHHHHHHh
Confidence            7776655444433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.89  E-value=2.7e-20  Score=177.89  Aligned_cols=315  Identities=15%  Similarity=0.101  Sum_probs=208.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHhhhccchhhHHHHH
Q 012315          141 VGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK-LGLPFLLVVRVFMGIGEGVAMPAMNNIL  219 (466)
Q Consensus       141 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~~  219 (466)
                      .+.+.+++.+|.++|+...|+++||+|||..+.+..++..++.++..++.. .++.+++++|++.|+..|.......-++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            477888999999999999999999999999999998888877776665531 2788999999999999999999999999


Q ss_pred             hcccCCCchhHHHHHHHHHHHhHHHHHhhhHH-H-hhcccCchHHHHHHhHHHHHHHHHHhhhcccCCCCCC--CCChHH
Q 012315          220 SKWVPVAERSRSLALVYSGMYLGSVTGLAFSP-F-LIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP--QLRPAE  295 (466)
Q Consensus       220 ~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~-~-l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  295 (466)
                      .|..|++.||......+.+..+|.+++..++. . +.+...|++.+....+.+++..+. +.+.||+|+.--  +.++++
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~-l~~~PESPk~Ll~~k~~~~~  220 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLAL-LPFLPESPKYLLIKKGDEEE  220 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHH-HhcCCCCcchHHHHcCCHHH
Confidence            99999999999999999999999999976664 3 334456999988887777665554 455677775210  111111


Q ss_pred             H-----------------HHH--hhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH-
Q 012315          296 K-----------------KLI--VSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGT-----FILLTWMPTYYNQ-  350 (466)
Q Consensus       296 ~-----------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~-  350 (466)
                      .                 ++.  ..+.++.+++++.+++++++|+..+.-....+...+.+     .....|...++.+ 
T Consensus       221 A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~a  300 (485)
T KOG0569|consen  221 ARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTA  300 (485)
T ss_pred             HHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHc
Confidence            1                 000  11111222336678899999887655433322222221     2233333333333 


Q ss_pred             -----------------------------------HHHHHHhHHHHHHHH-------HHhcCCchHHH---HHHHHHH-h
Q 012315          351 -----------------------------------IMQSIGFLGPAFFLT-------QLSHVDSPAMA---VLCMACS-Q  384 (466)
Q Consensus       351 -----------------------------------~~~~~~~~~~~~~~~-------~~~~~~~~~~~---~~~~~~~-~  384 (466)
                                                         .+...+..++.+...       ...... .|..   +++.++. .
T Consensus       301 G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~-~~~~y~~i~~~~~~~~  379 (485)
T KOG0569|consen  301 GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG-SWLSYLCIAAIFLFII  379 (485)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHH
Confidence                                               122222222221111       111111 2222   2222333 3


Q ss_pred             hhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHh
Q 012315          385 GTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  458 (466)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  458 (466)
                      .+.....|..+.+..|+.| +.|..++++...+..+..++-......+.+..|. ..|+.+.+..++..+..+..
T Consensus       380 ~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~  453 (485)
T KOG0569|consen  380 SFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRY  453 (485)
T ss_pred             hhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHh
Confidence            3333346777888889887 5999999999999999999999999999998776 56666666555555555554

>PTZ00207 hypothetical protein; Provisional

Probab=99.89  E-value=2.7e-20  Score=183.72  Aligned_cols=354  Identities=15%  Similarity=0.106  Sum_probs=245.1

Q ss_pred             CchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHH
Q 012315          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (466)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (466)
                      .++|..+..........+. .+.++.+.|.+++++|+|..+++++.++.. ....++++.|++.||+|+|+++.++.+++
T Consensus        24 ~~Rw~~lva~~~~~~~~g~-~y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~  101 (591)
T PTZ00207         24 PRRFALLVLGAFCSICTSF-MYAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVF  101 (591)
T ss_pred             cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            4577666666555554433 456777888999999999999999988743 44567888999999999999999999999


Q ss_pred             HHHHHHHHHHhh----hchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHH-HhhhHHHhh
Q 012315          180 SIATALTPVAAK----LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVT-GLAFSPFLI  254 (466)
Q Consensus       180 ~~~~~~~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i-g~~~~~~l~  254 (466)
                      .++.++++++.+    .+++.+.+.|++.|+|.+...+.....+.+|+| ++||+++|+...+.++|.++ +++..+++.
T Consensus       102 ~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        102 CLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998721    278999999999999999988999999999996 78999999999999999986 444444443


Q ss_pred             cccCchHHHHHHhHHHHHHHHHHhhhcccCCCCCC-----CCChHHHH------------------H-------------
Q 012315          255 HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP-----QLRPAEKK------------------L-------------  298 (466)
Q Consensus       255 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------------~-------------  298 (466)
                        .+|+..|++.+++.++..++.+.+.++++....     ..+++++.                  .             
T Consensus       181 --~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~y  258 (591)
T PTZ00207        181 --DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVF  258 (591)
T ss_pred             --HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHH
Confidence              368888888888888877766665554432111     01111111                  0             


Q ss_pred             ------------------------Hh---------------------h-ccc-------------------------C-C
Q 012315          299 ------------------------IV---------------------S-SCA-------------------------S-K  306 (466)
Q Consensus       299 ------------------------~~---------------------~-~~~-------------------------~-~  306 (466)
                                              ..                     + +.+                         + .
T Consensus       259 l~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (591)
T PTZ00207        259 LPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYI  338 (591)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCC
Confidence                                    00                     0 000                         0 0


Q ss_pred             CCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------H
Q 012315          307 EPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY--------------------------------------Y  348 (466)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------l  348 (466)
                      .|+...++.+.+++.++|.+++.++|.......+...+.+.                                      +
T Consensus       339 ~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~  418 (591)
T PTZ00207        339 APQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWS  418 (591)
T ss_pred             CCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHH
Confidence            01122366777888999999988887654322222111111                                      1


Q ss_pred             HH----------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHH
Q 012315          349 NQ----------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGV  418 (466)
Q Consensus       349 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~  418 (466)
                      ++          ....+..+ +.+..+.+....+...+.+..++.+++.+..++.......|++.++.|+-+-+.....-
T Consensus       419 ~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFgk~~g~~yN~~~~a~p  497 (591)
T PTZ00207        419 QKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFAKDPAKHYNFCFLGSV  497 (591)
T ss_pred             HhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhccchHHHhhHHhHHHH
Confidence            11          11122222 22222222222222467777778888888888999999999888999998888888888


Q ss_pred             HHHHHH-HHHHHHHhcc----C------c---chhHHHHHHHHHHHHHHHHHHhc
Q 012315          419 LAGVFG-TAATGYILQH----G------S---WDDVFKVSVGLYLVGTAVWNLFS  459 (466)
Q Consensus       419 ~g~~i~-~~~~g~l~~~----~------g---~~~~~~~~~~~~~~~~~~~~~~~  459 (466)
                      +|..+- -.+.|.++|+    .      |   ++..|++.+++.+++.++...+.
T Consensus       498 igs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~  552 (591)
T PTZ00207        498 LSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH  552 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence            888776 6788888876    1      1   66889999888888888766553

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.89  E-value=3.1e-22  Score=183.76  Aligned_cols=367  Identities=16%  Similarity=0.195  Sum_probs=254.2

Q ss_pred             CCCchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhcc-C-------CChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcc
Q 012315           98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEF-N-------WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK  169 (466)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r  169 (466)
                      ..+++.+.+.+...+++.+.++...++.+.|.+...+ |       +++...+.+..+..+|.++++++.|++.||+|||
T Consensus        35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK  114 (538)
T KOG0252|consen   35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK  114 (538)
T ss_pred             hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence            3566778888889999999999999998888765443 2       4566778999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhh-----chhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHH
Q 012315          170 AVLGFGVVWWSIATALTPVAAKL-----GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSV  244 (466)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  244 (466)
                      +++...++++.++++++++....     -.+++...|++.|+|.|+-+|...+..+|...+++||...+......++|..
T Consensus       115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil  194 (538)
T KOG0252|consen  115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL  194 (538)
T ss_pred             hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence            99999999999999988776421     2467778899999999999999999999999999999999988888888777


Q ss_pred             HHhhhHHHhhcc---------------cCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCC--C--hHH---HHHHhh-
Q 012315          245 TGLAFSPFLIHR---------------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL--R--PAE---KKLIVS-  301 (466)
Q Consensus       245 ig~~~~~~l~~~---------------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~---~~~~~~-  301 (466)
                      .|.+++-.+...               .-||..+.+.++..++.. ...+..||+++-..-.  +  ...   ++.... 
T Consensus       195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~l-y~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~  273 (538)
T KOG0252|consen  195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVL-YFRLKMPETARYTALVSKKLKQAAGDMKKVLSVD  273 (538)
T ss_pred             hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHH-HhhhcCCcchhHHHHhhcCHhhhhhccccccccc
Confidence            777666554321               128888776555554433 3344455554322000  0  000   000000 


Q ss_pred             -----cccCCCCCCCcc---hhhhhcC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q 012315          302 -----SCASKEPVKTIP---WGLILSK---PPVWALIVSHFCHNWGTFILLTWMPTYYNQ--------------------  350 (466)
Q Consensus       302 -----~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------------  350 (466)
                           +.+...+.....   +...+..   +.+...+...|+.-.+++....+....++.                    
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~  353 (538)
T KOG0252|consen  274 IEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGN  353 (538)
T ss_pred             cchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHH
Confidence                 000000111111   2222221   334455566777777777777777666663                    


Q ss_pred             -------------------------HHHHHHhHHHHHHHHHHhcCCc----hHHHHHHHHHH-hhhhhhhhhhhhhhhcc
Q 012315          351 -------------------------IMQSIGFLGPAFFLTQLSHVDS----PAMAVLCMACS-QGTDAFSQSGLYSNHQD  400 (466)
Q Consensus       351 -------------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  400 (466)
                                               .....++.+..++.+.+....+    ..-..++..+. .+...........+..|
T Consensus       354 ~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE  433 (538)
T KOG0252|consen  354 LIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAE  433 (538)
T ss_pred             HHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehh
Confidence                                     5666677777776666655443    11122222222 22223334455666788


Q ss_pred             cCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhc-----cCcchhHHHHHHHHHHHHHHHHHHh-cCCCccc
Q 012315          401 IAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQ-----HGSWDDVFKVSVGLYLVGTAVWNLF-STGEKVV  465 (466)
Q Consensus       401 ~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  465 (466)
                      .+| +.|++..|+....+-+|++++....+++.+     ..|.+..+++.+++.+++.+..+++ ++++|.+
T Consensus       434 ~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~l  505 (538)
T KOG0252|consen  434 IFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSL  505 (538)
T ss_pred             hchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCH
Confidence            888 699999999999999999999999999999     6899999999999999998887766 4555544

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.88  E-value=1.6e-19  Score=172.72  Aligned_cols=335  Identities=14%  Similarity=0.132  Sum_probs=226.7

Q ss_pred             HHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccC-cchHHHHHHHHHHHHHHHHHH
Q 012315          110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG-GKAVLGFGVVWWSIATALTPV  188 (466)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-~r~~~~~~~~~~~~~~~~~~~  188 (466)
                      ...+++.++....+.|.++.+.++.|+|..|+|.+.++..+..+++.+++|.++||.+ +|+.+.+..++.++.......
T Consensus         8 s~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~   87 (400)
T PF03825_consen    8 SLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666677888889999999999999999999999999999999999999986 567777777777777767677


Q ss_pred             HhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhh-HHHhhcccC---chHHHH
Q 012315          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAF-SPFLIHRFG---WPSVFY  264 (466)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~-~~~l~~~~g---w~~~~~  264 (466)
                      .+  +++.+++..++..+......|...++..+...  +++.-.|.....+++|.+++... ++.+....+   ....++
T Consensus        88 ~~--~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~  163 (400)
T PF03825_consen   88 SS--SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY  163 (400)
T ss_pred             hc--cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence            77  88888888888888888888888888888874  45666777777888888877554 233333333   234455


Q ss_pred             HHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 012315          265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM  344 (466)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (466)
                      +.++..++..... +..|+.|.+++..++.++            ....+..+++|+|++....+..++.........++.
T Consensus       164 i~~~~~~ll~~~~-l~lp~~~~~~~~~~~~~~------------~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~  230 (400)
T PF03825_consen  164 IAAILSLLLAGFA-LFLPKTPPKRSAKESVKK------------LLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFF  230 (400)
T ss_pred             HHHHHHHHHHHHH-HhCCCCccccccCCCccc------------ccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555444433332 334544422111111000            011123468999999988888888888889999999


Q ss_pred             HHHHHH-------------------------------------HHHHHHhHHHHHHHHHHhcC-CchHHHHHHH----HH
Q 012315          345 PTYYNQ-------------------------------------IMQSIGFLGPAFFLTQLSHV-DSPAMAVLCM----AC  382 (466)
Q Consensus       345 ~~~l~~-------------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~  382 (466)
                      +.|+++                                     .+..++.+..++=....... ++.+......    .+
T Consensus       231 ~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~l  310 (400)
T PF03825_consen  231 SIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLL  310 (400)
T ss_pred             HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhh
Confidence            999988                                     22222233333322233333 3333333222    23


Q ss_pred             HhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHH-HHHHHHHHHHHHHHhccCcch------hHHHHHHHHHHHHHHH
Q 012315          383 SQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAG-VLAGVFGTAATGYILQHGSWD------DVFKVSVGLYLVGTAV  454 (466)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~-~~g~~i~~~~~g~l~~~~g~~------~~~~~~~~~~~~~~~~  454 (466)
                      -+...+........+..+..| +.|+++.|+++... .+|..+|..++|++.|+.|.+      ..+.+.+++.++..++
T Consensus       311 hG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~  390 (400)
T PF03825_consen  311 HGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL  390 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence            566666667777777777776 68999999988764 799999999999999996655      3445555555555555


Q ss_pred             HHHhcCC
Q 012315          455 WNLFSTG  461 (466)
Q Consensus       455 ~~~~~~~  461 (466)
                      +.++.|+
T Consensus       391 f~~~fk~  397 (400)
T PF03825_consen  391 FVILFKP  397 (400)
T ss_pred             HHhhccC
Confidence            5554333

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.88  E-value=2.9e-20  Score=174.39  Aligned_cols=347  Identities=10%  Similarity=0.017  Sum_probs=226.0

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhhhhh-ccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHH--HHH
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILPMSA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW--SIA  182 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~--~~~  182 (466)
                      .+.....++..++......+..+.+.+ +.|+|.+++|.+.++..+..++.+++.|.++||+|.||-++....+.  ..+
T Consensus         9 ~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~   88 (412)
T PF01306_consen    9 YWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFG   88 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence            444555566666667788888888665 48999999999999999999999999999999999777555433222  222


Q ss_pred             H-HHHHHHhh--hchh-HHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC
Q 012315          183 T-ALTPVAAK--LGLP-FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (466)
Q Consensus       183 ~-~~~~~~~~--~~~~-~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g  258 (466)
                      . +...+.+-  .|.+ ..+++.+..|+......++.-+++.++.  ++.+.-.|-..+.+++|.+++..++|.+.+ .+
T Consensus        89 pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~  165 (412)
T PF01306_consen   89 PFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-IN  165 (412)
T ss_dssp             HHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eC
Confidence            2 22222220  1332 2223333345545555566666766664  556667788899999999999999999987 35


Q ss_pred             chHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHH
Q 012315          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTF  338 (466)
Q Consensus       259 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (466)
                      -...|++..+..++..++..+..++.+++.+..+..+.+        +++.......+++|+|++|.+.+........+.
T Consensus       166 p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~  237 (412)
T PF01306_consen  166 PNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAK--------KDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYD  237 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS--------------HHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccC--------CCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence            567788766666555555555544433322111110000        001111235678999999998887777777777


Q ss_pred             HHHHHHHHHHHH----------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHH
Q 012315          339 ILLTWMPTYYNQ----------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVL  378 (466)
Q Consensus       339 ~~~~~~~~~l~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (466)
                      .+....+.|...                                        ....++..++.+=.......++++.+..
T Consensus       238 vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~  317 (412)
T PF01306_consen  238 VFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISL  317 (412)
T ss_dssp             HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence            776667777654                                        2333344444555555667778888888


Q ss_pred             HHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHH-HHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHH
Q 012315          379 CMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLS-NTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN  456 (466)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~-~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  456 (466)
                      .-.+-+.-.........-+..+..| |..++...+. +...++|.++.+.+.|.+.|+.|++..|++++.+.++..++..
T Consensus       318 ~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~  397 (412)
T PF01306_consen  318 IKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISA  397 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhe
Confidence            7777777777777777778777777 5778888885 6777999999999999999999999999988888777776666


Q ss_pred             HhcCCCc
Q 012315          457 LFSTGEK  463 (466)
Q Consensus       457 ~~~~~~~  463 (466)
                      +.-+++|
T Consensus       398 f~l~~~~  404 (412)
T PF01306_consen  398 FTLKKDK  404 (412)
T ss_dssp             HHS--SS
T ss_pred             eeecCCC
Confidence            6644443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.88  E-value=7.2e-20  Score=182.97  Aligned_cols=179  Identities=20%  Similarity=0.174  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHhhhh--hhhhHHhHhhhhhcc-----CCCh--hhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHH
Q 012315          105 IVVLCFSAFLLCNMD--RVNMSIAILPMSAEF-----NWNP--ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFG  175 (466)
Q Consensus       105 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~  175 (466)
                      ......+..+..+++  ....++....+.++.     ..+.  .+.+++.+...++..+++++.|+++|++|||+.++++
T Consensus        46 ~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~  125 (513)
T KOG0254|consen   46 LALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLA  125 (513)
T ss_pred             HHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            334444444555553  344555555555532     2222  3559999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc
Q 012315          176 VVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH  255 (466)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~  255 (466)
                      .+++.++.+++++++  |+++++++|++.|+|.|+.....+.+++|..|++.||...+..+....+|..++..++....+
T Consensus       126 ~~~~~iG~ii~~~a~--~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~  203 (513)
T KOG0254|consen  126 VVLFLIGAIIIALAP--SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK  203 (513)
T ss_pred             HHHHHHHHHHHHHhh--hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            999999999999999  999999999999999999999999999999999999999999999999999999555444433


Q ss_pred             c-cCchHHHHHHhHHHHHHHHHHhhhcccCCC
Q 012315          256 R-FGWPSVFYSFGSLGTVWFTVWLSKAHSSPA  286 (466)
Q Consensus       256 ~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (466)
                      . ++||..+.+..+.+++..+. .++.||+|+
T Consensus       204 ~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~  234 (513)
T KOG0254|consen  204 VYAGWRIPLGLALIPAVILALG-MLFLPESPR  234 (513)
T ss_pred             CCccHHHHHHHHHHHHHHHHHH-HHhCCCChH
Confidence            2 48999998888888777776 677777765

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.88  E-value=6.7e-20  Score=184.18  Aligned_cols=297  Identities=15%  Similarity=0.123  Sum_probs=206.1

Q ss_pred             hhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhcc
Q 012315          131 SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGV  210 (466)
Q Consensus       131 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~  210 (466)
                      .+.++.+.....+..+++.+|..+|++++|.++||+|||++++.++++..++.++.++++  |++.+++.|++.|++.+.
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~--~~~~~~~~Rfl~G~~~~~  187 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP--NYWMFLIFRFLSGFFGSG  187 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHhhccc
Confidence            456677889999999999999999999999999999999999999999999999999999  999999999999999999


Q ss_pred             chhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCC
Q 012315          211 AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ  290 (466)
Q Consensus       211 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (466)
                      .......++.|++++++|+.+..+ ......++.+++..++++..  +||+.+++..+..++.++. +++.+|.++....
T Consensus       188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~  263 (521)
T KOG0255|consen  188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLS  263 (521)
T ss_pred             hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHH
Confidence            999999999999999999999999 77888888888888888887  8999999998888876665 4555566542111


Q ss_pred             -CChHHHHHH-hh----------------------cccCCCCCCCcchhhhhcChhHHHHHHHHHHH----HHHHHHHHH
Q 012315          291 -LRPAEKKLI-VS----------------------SCASKEPVKTIPWGLILSKPPVWALIVSHFCH----NWGTFILLT  342 (466)
Q Consensus       291 -~~~~~~~~~-~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  342 (466)
                       .+.++..+. ++                      ........++..+..+++.|++....+...+.    ...+++...
T Consensus       264 ~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~  343 (521)
T KOG0255|consen  264 KGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSL  343 (521)
T ss_pred             cCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence             111111000 00                      00000111224466777776433322222222    222222111


Q ss_pred             H-------------------HHHHHHH----------HHHHHHhHHHHHHHHHHhcCCc--h-HHHHHHHHHHhhhhhhh
Q 012315          343 W-------------------MPTYYNQ----------IMQSIGFLGPAFFLTQLSHVDS--P-AMAVLCMACSQGTDAFS  390 (466)
Q Consensus       343 ~-------------------~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~  390 (466)
                      .                   .|.+...          .....+.....+.++.......  . +.......++.++....
T Consensus       344 ~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (521)
T KOG0255|consen  344 NVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSA  423 (521)
T ss_pred             hhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Confidence            1                   1111111          2223333333333333322221  2 24555555566666666


Q ss_pred             hhhhhhhhcccCcc-chhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012315          391 QSGLYSNHQDIAPR-YSGVLLGLSNTAGVLAGVFGTAATGYILQ  433 (466)
Q Consensus       391 ~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  433 (466)
                      ....+.+..|..|. .|+.+.+.......+|.+++|.+.-....
T Consensus       424 ~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  424 FNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            66668888999995 99999999999999999999998866544

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.87  E-value=9.3e-19  Score=170.17  Aligned_cols=170  Identities=14%  Similarity=0.211  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhccc-CcchHHHHHHHHHHHH
Q 012315          105 IVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWWSIA  182 (466)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~  182 (466)
                      .+..++...+...+..+.....+|. +.+++|++..+.+.+.+.+.....++.+++|+++||+ |||+++.++.++.+++
T Consensus        10 ~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg   89 (493)
T PRK15462         10 AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIG   89 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence            3445555555556666666666666 5667899999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCC--chhHHHHHHHHHHHhHHHHHhhhHHHhhcccCch
Q 012315          183 TALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA--ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP  260 (466)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~  260 (466)
                      .++++.... +...++++..+.++|.|...+...++++|.+|++  +|+.++++.+.+.++|+.++|.+.+++.+.+||+
T Consensus        90 ~lll~~~~~-~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~  168 (493)
T PRK15462         90 HVVLGASEI-HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWA  168 (493)
T ss_pred             HHHHHHhhc-chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChH
Confidence            877765431 2233444445556677777788889999999875  7999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHH
Q 012315          261 SVFYSFGSLGTVWFT  275 (466)
Q Consensus       261 ~~~~~~~~~~~~~~~  275 (466)
                      +.|.+.++..++..+
T Consensus       169 ~~F~iaaigm~l~li  183 (493)
T PRK15462        169 MGFGLAAVGMIAGLV  183 (493)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999987654444333

>PRK09669 putative symporter YagG; Provisional

Probab=99.84  E-value=2.5e-18  Score=169.25  Aligned_cols=313  Identities=12%  Similarity=0.047  Sum_probs=197.4

Q ss_pred             HHHHHhhhhhhhhHHh-HhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcc----cCcc-hHHHHHHHHHHHHHH
Q 012315          111 SAFLLCNMDRVNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGK-AVLGFGVVWWSIATA  184 (466)
Q Consensus       111 ~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r-~~~~~~~~~~~~~~~  184 (466)
                      ++.+...........+ ...+.+++|+++.++|.+.++..+...+..|+.|+++||    +||| +.++.+.+..+++.+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~   95 (444)
T PRK09669         16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL   95 (444)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence            3333333333334443 455888899999999999999999999999999999999    6774 556677777777776


Q ss_pred             HHHHHhhh----chhHHHHHHHHHHhhhccchhhHHHHHhccc-CCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc----
Q 012315          185 LTPVAAKL----GLPFLLVVRVFMGIGEGVAMPAMNNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIH----  255 (466)
Q Consensus       185 ~~~~~~~~----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~----  255 (466)
                      +....+..    ..+.+++..++.+.+.........++.+|+. ++++|++..++...+..+|..+++.+...+..    
T Consensus        96 l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~  175 (444)
T PRK09669         96 LTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGK  175 (444)
T ss_pred             HHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            65555411    2345555666667777777777888999988 45789998888888888888777765544332    


Q ss_pred             ---ccCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHH
Q 012315          256 ---RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFC  332 (466)
Q Consensus       256 ---~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (466)
                         ..||+..+.+.+++.++..+..++..+|+++++++.+               .+....+++++|||.++.+++..++
T Consensus       176 ~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~~~---------------~~~~~~~~~~~~n~~~~~l~~~~~~  240 (444)
T PRK09669        176 GDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVDNS---------------SSVWKDLKLLLGNSQWRIMFIFNVV  240 (444)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCcCC---------------CCHHHHHHHHhCCchHHHHHHHHHH
Confidence               3468888888887777666555554444322111000               0112246778899988877666555


Q ss_pred             HHHHHHHHHHHHHHHHHH------------------------------------HHHHHHhHHHHH-HH-HHHhcCCchH
Q 012315          333 HNWGTFILLTWMPTYYNQ------------------------------------IMQSIGFLGPAF-FL-TQLSHVDSPA  374 (466)
Q Consensus       333 ~~~~~~~~~~~~~~~l~~------------------------------------~~~~~~~~~~~~-~~-~~~~~~~~~~  374 (466)
                      ............+.|.+.                                    .....+.+...+ .+ ......++.+
T Consensus       241 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (444)
T PRK09669        241 LLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVW  320 (444)
T ss_pred             HHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHH
Confidence            443332222211111111                                    111111211111 11 1111223444


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhcccCc--------cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcch
Q 012315          375 MAVLCMACSQGTDAFSQSGLYSNHQDIAP--------RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWD  438 (466)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--------~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~  438 (466)
                      ..++..++.+.+.+...+..++...+..+        +..|..+|+.+....+|..+++.+.|.+.+..||.
T Consensus       321 ~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        321 LIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            45555555566666666777777766542        24577889999999999999999999999987773

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.83  E-value=1.6e-18  Score=159.77  Aligned_cols=357  Identities=14%  Similarity=0.111  Sum_probs=251.7

Q ss_pred             CCCCCCchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHH
Q 012315           95 WWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF  174 (466)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~  174 (466)
                      ..|..++||.+++.+.+..+.+++.+..+++...+....|| +....-|...+|.+.++...+++-|+.||+|-|....+
T Consensus        36 ~~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll  114 (480)
T KOG2563|consen   36 GHRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL  114 (480)
T ss_pred             ccccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence            34677889999999999999999999999999888989999 87888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh----chh--HHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhh
Q 012315          175 GVVWWSIATALTPVAAKL----GLP--FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLA  248 (466)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~----~~~--~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~  248 (466)
                      +..+.+++..+-..+..+    .++  ....+..+.+.+.-.....-..+..-||++++|..+..+-.+++.+|.++|.+
T Consensus       115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            999999999888776532    344  67788899999888888887889999999999999999999999999999999


Q ss_pred             hHHHhhccc------CchH--HHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcC
Q 012315          249 FSPFLIHRF------GWPS--VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSK  320 (466)
Q Consensus       249 ~~~~l~~~~------gw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (466)
                      +...+..+.      .|..  .|+..+++..+.+++..+..+++|+.++.......+         +.+-..+.++.++|
T Consensus       195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------~~~f~~si~~~~~n  265 (480)
T KOG2563|consen  195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------DASFPKSIKSCFKN  265 (480)
T ss_pred             ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------cCcHHHHHHHHHcC
Confidence            988887654      2443  455555555555555555555555444332222111         11123467889999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhHHHHH-------------------------
Q 012315          321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQ-------------IMQSIGFLGPAF-------------------------  362 (466)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------------~~~~~~~~~~~~-------------------------  362 (466)
                      +++..+.+.+......+++..+.+..-+..             .....++++..+                         
T Consensus       266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~  345 (480)
T KOG2563|consen  266 RQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG  345 (480)
T ss_pred             ccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence            999988888877777777666655522222             111111111111                         


Q ss_pred             --HHHHH-hcCCchHHHHHHHHHHhhhhhhhhhhhhhh-hcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCc--
Q 012315          363 --FLTQL-SHVDSPAMAVLCMACSQGTDAFSQSGLYSN-HQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS--  436 (466)
Q Consensus       363 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g--  436 (466)
                        .+... ......+.+.....+.+.+.....|.-... ++..+|..-++..|+.+..+++-+++-..+.+...+..+  
T Consensus       346 ~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~  425 (480)
T KOG2563|consen  346 TLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPP  425 (480)
T ss_pred             HHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCC
Confidence              11111 111112222222333333333334444333 344678888899999999999999999999999998866  


Q ss_pred             --chhHHHHHHHHHHHHHHHHHHhcCC
Q 012315          437 --WDDVFKVSVGLYLVGTAVWNLFSTG  461 (466)
Q Consensus       437 --~~~~~~~~~~~~~~~~~~~~~~~~~  461 (466)
                        +...-+......++++++..+++.+
T Consensus       426 ~~~~~~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  426 GNTFPANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             CCCccchhHhHHHHHHHHHHHhhhhhh
Confidence              5555566666666677666666543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.81  E-value=1.9e-23  Score=206.44  Aligned_cols=354  Identities=18%  Similarity=0.187  Sum_probs=223.9

Q ss_pred             HHHHHhhhhhhhhHHhHhhhh--hccCC---------ChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHH
Q 012315          111 SAFLLCNMDRVNMSIAILPMS--AEFNW---------NPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (466)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~--~~~~~---------s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (466)
                      ++.+..+++....+...+...  .+++.         +..+.++..+...++..+|+++.|.++||+|||+.+.++.++.
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~   86 (451)
T PF00083_consen    7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM   86 (451)
T ss_pred             HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence            344667777766665555433  22222         2245789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh-chhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc--
Q 012315          180 SIATALTPVAAKL-GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--  256 (466)
Q Consensus       180 ~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~--  256 (466)
                      .++.++..+++.. +++.+.++|++.|++.|...+....++.|..|+++|++..++.+.+..+|..++..++..+.+.  
T Consensus        87 ~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~  166 (451)
T PF00083_consen   87 IIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSD  166 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999988743 6889999999999999999999999999999999999999999999999999988887655443  


Q ss_pred             -cCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCC-hHHHHHH----------hhcccC------CCCCCCcchhhhh
Q 012315          257 -FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR-PAEKKLI----------VSSCAS------KEPVKTIPWGLIL  318 (466)
Q Consensus       257 -~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~------~~~~~~~~~~~~~  318 (466)
                       .+||..+.+.++..++..+. ..+.||+|+.--... .++.++.          .++.++      +.++.+..+++++
T Consensus       167 ~~~Wr~~~~~~~~~~l~~~~~-~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  245 (451)
T PF00083_consen  167 NWGWRILLIFGAIPSLLVLLL-RFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLF  245 (451)
T ss_pred             ccccccccccccccccccccc-ccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecc
Confidence             34999998888777665443 356677765211100 0000000          000000      0011113466777


Q ss_pred             cChh----HHHHHHHHHHH-HHHHHHHHHHHHHHHHH----------------------------------HHHHHHhHH
Q 012315          319 SKPP----VWALIVSHFCH-NWGTFILLTWMPTYYNQ----------------------------------IMQSIGFLG  359 (466)
Q Consensus       319 ~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~l~~----------------------------------~~~~~~~~~  359 (466)
                      +++.    +...+....+. ..+......+.+.++++                                  .....+...
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~  325 (451)
T PF00083_consen  246 RNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLL  325 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7643    11111111111 11112233333433333                                  112222222


Q ss_pred             HHHHHHHH-----hcCCc----hHHHHHHHH-HHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHH
Q 012315          360 PAFFLTQL-----SHVDS----PAMAVLCMA-CSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAAT  428 (466)
Q Consensus       360 ~~~~~~~~-----~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~  428 (466)
                      .++....+     ...+.    ....+.... ...+......+..+.+..|.+| +.|+++.|+....+.+++++++.+.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~  405 (451)
T PF00083_consen  326 MAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLF  405 (451)
T ss_pred             ccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            22222111     11111    112222222 2223333445666678889888 6999999999999999999999999


Q ss_pred             HHHhccCcchhHHHHHHHHHHHHHHHHHHh--cCCCccc
Q 012315          429 GYILQHGSWDDVFKVSVGLYLVGTAVWNLF--STGEKVV  465 (466)
Q Consensus       429 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  465 (466)
                      ..+.+..+....+.+.+++.+++.++..++  ++++|.+
T Consensus       406 ~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l  444 (451)
T PF00083_consen  406 PYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTL  444 (451)
T ss_pred             ccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCH
Confidence            999888764455556555555555554444  4555543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.80  E-value=3.8e-19  Score=153.16  Aligned_cols=350  Identities=18%  Similarity=0.206  Sum_probs=226.3

Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcc-cCcchHHHHHHHHH
Q 012315          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWW  179 (466)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~  179 (466)
                      ++...+...++..|-.++.....+....++..+.+++.++..++.+++.....+.+.++|++.|| +|-|..-++-+...
T Consensus        41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv  120 (459)
T KOG4686|consen   41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV  120 (459)
T ss_pred             hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence            45555666666667777777788888888999999999999999999999999999999999998 68887766666666


Q ss_pred             HHHHHHHH---HHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc
Q 012315          180 SIATALTP---VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (466)
Q Consensus       180 ~~~~~~~~---~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~  256 (466)
                      .++.++++   ..+  .+|.+..+|++.|+|.-..-.+.+.++..||..|+.+.++|+......+|..+--.+.+++.+.
T Consensus       121 ~~GqliFa~Ggi~~--aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  121 FLGQLIFAAGGISH--AFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             HHHHHHHHhchHHH--HHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence            67766654   345  7999999999999998777788899999999999999999999999999998877777777664


Q ss_pred             cCc------hHH---HHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcc-cCCCCCCCcchhhhh-cChhHHH
Q 012315          257 FGW------PSV---FYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSC-ASKEPVKTIPWGLIL-SKPPVWA  325 (466)
Q Consensus       257 ~gw------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~  325 (466)
                      .+-      ...   .+..+...+...+......--.+      +..|+....++. ..+.+    .+.+.. -.|.+|.
T Consensus       199 ~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D------~rAerilh~e~g~~Ge~p----kLtdv~~f~ppfw~  268 (459)
T KOG4686|consen  199 MGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSD------DRAERILHLEEGFLGEEP----KLTDVNTFYPPFWV  268 (459)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------hHHHHHHhhhcCcccCCc----ccccccccCccHHH
Confidence            321      111   11111111111111111000000      001111000000 00000    011111 2478999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhHHHHHH-------------------HHHHh---c
Q 012315          326 LIVSHFCHNWGTFILLTWMPTYYNQ--------------IMQSIGFLGPAFF-------------------LTQLS---H  369 (466)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~l~~--------------~~~~~~~~~~~~~-------------------~~~~~---~  369 (466)
                      +.+..+++..+.+.+.+.-|.++++              .+-.++....-+.                   ..+..   .
T Consensus       269 ~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l  348 (459)
T KOG4686|consen  269 LVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGL  348 (459)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhH
Confidence            9999999999999999999999988              0001111100000                   00000   0


Q ss_pred             CCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-Ccch---hHHHHH
Q 012315          370 VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWD---DVFKVS  444 (466)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~g~~---~~~~~~  444 (466)
                      .-+.+.-...+.+.+.......-..+..+..+.| ++.|++.|.++...++|-++.|++.|.+.|. ++|.   ..|+..
T Consensus       349 ~Ft~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~  428 (459)
T KOG4686|consen  349 FFTFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII  428 (459)
T ss_pred             HhhhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence            0011122223333344444444445666666677 5899999999999999999999999999998 4454   445555


Q ss_pred             HHHHHHHHHHHHHhcCCC
Q 012315          445 VGLYLVGTAVWNLFSTGE  462 (466)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~  462 (466)
                      ..+.+..+.+.+.+.+++
T Consensus       429 ~~~aL~svgil~~~N~kq  446 (459)
T KOG4686|consen  429 GLMALTSVGILFYLNKKQ  446 (459)
T ss_pred             HHHHHHHHHHHhheeccc
Confidence            566666666666665543

>TIGR01272 gluP glucose/galactose transporter

Probab=99.78  E-value=1.3e-16  Score=148.39  Aligned_cols=239  Identities=10%  Similarity=0.007  Sum_probs=169.6

Q ss_pred             chhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc----------------
Q 012315          193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR----------------  256 (466)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~----------------  256 (466)
                      +++.+++..++.|.|.+...+..+.++++..+++++++.+++.+.++++|..++|.+++.+...                
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~   88 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA   88 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence            7899999999999999999999999999999999999999999999999999999999988732                


Q ss_pred             cCchHHHHHHhHHHHHHHHHHhhhc-ccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHH
Q 012315          257 FGWPSVFYSFGSLGTVWFTVWLSKA-HSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNW  335 (466)
Q Consensus       257 ~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (466)
                      .+|+++|++.+.+.++..+++.+.. |+.++   +.+++..+        ++   ....+..+++|.++...+..+++..
T Consensus        89 ~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~---~~~~~~~~--------~~---~~~~~~~~~~~~~~l~~~~~f~yvg  154 (310)
T TIGR01272        89 AKVHTPYLLLAGALAVLAIIFAFLPLPELQE---ADVARVSS--------GD---TTQKTSAFQFTHLVLGALGIFVYVG  154 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCCCc---cccccccc--------cc---ccchhhHHhhHHHHHHHHHHHHHHH
Confidence            3699999977777665555443332 22111   11000000        00   0112346778888888888888888


Q ss_pred             HHHHHHHHHHHHHHH---------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHH
Q 012315          336 GTFILLTWMPTYYNQ---------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMA  376 (466)
Q Consensus       336 ~~~~~~~~~~~~l~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (466)
                      .+.+...|.+.|+.+                                       .....+..+..+........+.....
T Consensus       155 ~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~  234 (310)
T TIGR01272       155 AEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM  234 (310)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999974                                       22222222222322222222333222


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHH
Q 012315          377 VLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGL  447 (466)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~  447 (466)
                       ..+.+.+++.+..+|...+...+..|++.+++.++. ..+.+|+++.|++.|.+.|..|.+..|++...+
T Consensus       235 -~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       235 -WFVLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence             344455666777788888777777777777777875 678899999999999999998888887754443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.77  E-value=5.8e-15  Score=144.09  Aligned_cols=318  Identities=15%  Similarity=0.062  Sum_probs=225.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHH-HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHH
Q 012315          139 ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF-GVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNN  217 (466)
Q Consensus       139 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~  217 (466)
                      +..++..++..+...+..|+.|.++|+-|+||.++. ..++..++..++.+.+..+++...+..++.-++.+......++
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345788889999999999999999999988876654 4455556666666654334555555566666777788888999


Q ss_pred             HHhcccCCCch--------------------------hHHHHHHHHHHHhHHHHHhhhHHHhhcc--------cCchHHH
Q 012315          218 ILSKWVPVAER--------------------------SRSLALVYSGMYLGSVTGLAFSPFLIHR--------FGWPSVF  263 (466)
Q Consensus       218 ~~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~ig~~~~~~l~~~--------~gw~~~~  263 (466)
                      ++.+..+++++                          ++..+.-.....+|+++.-.+.-.+...        .+.|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999998888                          8999988888888888877766554322        2358888


Q ss_pred             HHHhHHHHHHHHHHhhhcccCCCCCCCCC-hHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHH
Q 012315          264 YSFGSLGTVWFTVWLSKAHSSPAEDPQLR-PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT  342 (466)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (466)
                      .+.++.-++..+..+++.|+++..++... ........++       -...++++.|.|.....++..+++.-+..++..
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~-------l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~  302 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKR-------LWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIIS  302 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHH-------HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888877777777765222111 1110000000       012456677888999999999999999999999


Q ss_pred             HHHHHHHH------------------------------------H---HHHHHhHHH--HHHHHHH------hcCCchHH
Q 012315          343 WMPTYYNQ------------------------------------I---MQSIGFLGP--AFFLTQL------SHVDSPAM  375 (466)
Q Consensus       343 ~~~~~l~~------------------------------------~---~~~~~~~~~--~~~~~~~------~~~~~~~~  375 (466)
                      ....|.++                                    .   .....++..  ......+      ....+.+.
T Consensus       303 ~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~  382 (477)
T PF11700_consen  303 FAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWE  382 (477)
T ss_pred             HHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHH
Confidence            99999886                                    1   111111111  1111111      01344555


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccC-cchhHHHHHHHHHHHHHH
Q 012315          376 AVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHG-SWDDVFKVSVGLYLVGTA  453 (466)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~  453 (466)
                      +.+..++.+.+.+...+..-++..++.| ++.+..+|++...+...+.+||.+.|.+.+.. +.+..+....++.+++.+
T Consensus       383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~  462 (477)
T PF11700_consen  383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLI  462 (477)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence            6666666666677777777777777777 58899999999999999999999999999994 588999999999999988


Q ss_pred             HHHHhcCCCc
Q 012315          454 VWNLFSTGEK  463 (466)
Q Consensus       454 ~~~~~~~~~~  463 (466)
                      ++..+..++.
T Consensus       463 ll~~v~~~~g  472 (477)
T PF11700_consen  463 LLFFVDVEKG  472 (477)
T ss_pred             HHhhccchhh
Confidence            8877754433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.77  E-value=3.9e-17  Score=160.85  Aligned_cols=344  Identities=9%  Similarity=0.030  Sum_probs=204.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccC-----cchHHHHHHHH
Q 012315          104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG-----GKAVLGFGVVW  178 (466)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~~~~~  178 (466)
                      ..+.++...++..+..........+.+.+++|++.++++...++..+...+-.+ +|.++||++     ||+.++++.++
T Consensus        26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             hHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence            345556666777888733444455667778999999999999999999998554 999999997     77777887766


Q ss_pred             HH-HHHHHHHHHhhhchh-HHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHH---HHHHHHhHHHHHhhhHHHh
Q 012315          179 WS-IATALTPVAAKLGLP-FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLAL---VYSGMYLGSVTGLAFSPFL  253 (466)
Q Consensus       179 ~~-~~~~~~~~~~~~~~~-~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~ig~~~~~~l  253 (466)
                      .. ++....+..+  +.. ...+..++.+++.+....+..++..|..+ ++++...+.   .....++|.++|+.++|.+
T Consensus       105 ~~~~~~~~l~~~~--~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l  181 (468)
T TIGR00788       105 GSAILYGLLPGKV--SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPL  181 (468)
T ss_pred             HHHHHHHhccccc--chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHH
Confidence            63 4433333333  433 33447889999999999999999999998 555443333   3334458999999999999


Q ss_pred             hcccCchHHHHHHhHHHHHHHHHHhhhcccCCC-CCCCCChHHH---HHHhhcccCCCCCCCcchhhhhcChhHHHHHHH
Q 012315          254 IHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPA-EDPQLRPAEK---KLIVSSCASKEPVKTIPWGLILSKPPVWALIVS  329 (466)
Q Consensus       254 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (466)
                      .+.++|+..|++.+++.++..+.. .+.+|++. ..++..+.+.   ........+...+......+.+++|.++...+.
T Consensus       182 ~~~~~~~~~f~~~a~l~ll~~~~~-~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~f  260 (468)
T TIGR00788       182 LDKTLTRILFLITAALLLLQLFVS-NLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIF  260 (468)
T ss_pred             HHhcCcchHHHHHHHHHHHHHHHH-HhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence            999999999999888877764433 44455421 1111000000   000000000000001124445777887765554


Q ss_pred             HHH-HHHHHHHHH---------------------------HHHH-----HHHHH----HHHHHHhHHHHHHHHHHh----
Q 012315          330 HFC-HNWGTFILL---------------------------TWMP-----TYYNQ----IMQSIGFLGPAFFLTQLS----  368 (466)
Q Consensus       330 ~~~-~~~~~~~~~---------------------------~~~~-----~~l~~----~~~~~~~~~~~~~~~~~~----  368 (466)
                      .++ +........                           ..+.     .+..+    ....++.++.++......    
T Consensus       261 ifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~  340 (468)
T TIGR00788       261 IFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVK  340 (468)
T ss_pred             HHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeee
Confidence            444 211110000                           0000     00000    111222222222111100    


Q ss_pred             ------cCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCc-----
Q 012315          369 ------HVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-----  436 (466)
Q Consensus       369 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-----  436 (466)
                            ..++.+......++.....+........+..+..| +.+|+.+|+.+.+.++|..+++.++|.+.+..|     
T Consensus       341 ~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~  420 (468)
T TIGR00788       341 RWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDN  420 (468)
T ss_pred             ccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence                  00122223333333444444455555666666666 689999999999999999999999999999877     


Q ss_pred             chhHHHHHHHHHHHHH
Q 012315          437 WDDVFKVSVGLYLVGT  452 (466)
Q Consensus       437 ~~~~~~~~~~~~~~~~  452 (466)
                      ++..+....++.+...
T Consensus       421 ~~~~~~~i~i~~~~~l  436 (468)
T TIGR00788       421 SNNLWLLILGHSLAPL  436 (468)
T ss_pred             ccchHHHHHHHHHHHH
Confidence            7766665555444443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.77  E-value=9.2e-17  Score=157.35  Aligned_cols=301  Identities=17%  Similarity=0.198  Sum_probs=217.9

Q ss_pred             HhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhc----ccCcchH-HHHHHHHHHHHHHHHHHH-h-hh----c
Q 012315          125 IAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD----TVGGKAV-LGFGVVWWSIATALTPVA-A-KL----G  193 (466)
Q Consensus       125 ~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~-~~~~~~~~~~~~~~~~~~-~-~~----~  193 (466)
                      ...+.+.+.+|+++..+|++..+..+..++..|+.|.++|    |+||||. ++++.+..+++.+++... + ..    .
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            3456678888999999999999999999999999999999    7897765 557888888888777765 3 11    1


Q ss_pred             hhHHHHHHHHHHhhhccchhhHHHHHhcccC-CCchhHHHHHHHHHHHhHHHHHhhhHHHhhccc-------CchHHHHH
Q 012315          194 LPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-------GWPSVFYS  265 (466)
Q Consensus       194 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-------gw~~~~~~  265 (466)
                      ...+.+..++..++.........++..|..+ +++|.+..+.-+.+..+|..+...+.+.+.+..       +|++...+
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v  182 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV  182 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence            2345666777788999999999999999997 478999999988888888876666666555322       58888888


Q ss_pred             HhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  345 (466)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (466)
                      .+++.++..++..+..+|++++.++.+             ++..-...++++++||.++.+.+..++............+
T Consensus       183 ~~iv~~v~~~i~~~~~ke~~~~~~~~~-------------~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~  249 (428)
T PF13347_consen  183 LAIVGLVFFLITFFFVKERSVEVTEQE-------------KKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLP  249 (428)
T ss_pred             HHHHHHHHhhhhhheeeeccccccccc-------------cccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHH
Confidence            888888877777776666211111100             1111233577889999999998888888888877777777


Q ss_pred             HHHHH------------------------------------HHHHHHhHHHHHHHHHHhcC--CchHHHHHHHHHHhhhh
Q 012315          346 TYYNQ------------------------------------IMQSIGFLGPAFFLTQLSHV--DSPAMAVLCMACSQGTD  387 (466)
Q Consensus       346 ~~l~~------------------------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  387 (466)
                      .|.+.                                    .....+.++.+.........  ++.+..++..++.+.+.
T Consensus       250 y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~  329 (428)
T PF13347_consen  250 YYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGY  329 (428)
T ss_pred             HHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhh
Confidence            77766                                    11122222222222222222  46677777777777777


Q ss_pred             hhhhhhhhhhhcccCc--------cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcch
Q 012315          388 AFSQSGLYSNHQDIAP--------RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWD  438 (466)
Q Consensus       388 ~~~~~~~~~~~~~~~p--------~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~  438 (466)
                      +......++...|..+        +..|..+|+.+....++..+++.+.|.+.+..||.
T Consensus       330 ~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  330 GAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             cccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            7777777777776554        34699999999999999999999999998876554

>PRK09848 glucuronide transporter; Provisional

Probab=99.76  E-value=7.9e-16  Score=151.75  Aligned_cols=312  Identities=13%  Similarity=0.075  Sum_probs=179.4

Q ss_pred             HHHHHHhhhhhhhhHHh-HhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhccc----CcchHH-HHHHHHHHHHH
Q 012315          110 FSAFLLCNMDRVNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV----GGKAVL-GFGVVWWSIAT  183 (466)
Q Consensus       110 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~----g~r~~~-~~~~~~~~~~~  183 (466)
                      .++.+..........++ .+++.+.+|++..++|.+.++..+..++..++.|+++||.    |||+.. .++.+...+..
T Consensus        14 g~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~   93 (448)
T PRK09848         14 SLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFS   93 (448)
T ss_pred             ccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHH
Confidence            33444444444444443 4457777899999999999999999999999999999996    666644 55655555444


Q ss_pred             HHHHHHh-h----hchhHHHHHHHHHHhhhccchhhHHHHHhcccCC-CchhHHHHHHHHHHH-----hHHHHHhhhHHH
Q 012315          184 ALTPVAA-K----LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV-AERSRSLALVYSGMY-----LGSVTGLAFSPF  252 (466)
Q Consensus       184 ~~~~~~~-~----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~-----~g~~ig~~~~~~  252 (466)
                      ++....+ .    ...+.+++..++.+++.+...+...++..+...+ ++|.+..++-..+.+     ++..++|.+.+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~  173 (448)
T PRK09848         94 VLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNS  173 (448)
T ss_pred             HHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4432111 0    0122344455677888888887777777766644 678887766554433     455556666554


Q ss_pred             hhccc--CchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHH
Q 012315          253 LIHRF--GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSH  330 (466)
Q Consensus       253 l~~~~--gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (466)
                      ..+..  +|.....+.+++.++..++.....+|+++++.+ +               +.....+++++|||.++...+..
T Consensus       174 ~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~-~---------------~~~~~~~~~l~~n~~f~~~~~~~  237 (448)
T PRK09848        174 SPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVA-Q---------------PSLKISLQTLKRNRPLFMLCIGA  237 (448)
T ss_pred             CCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCcc-C---------------CCHHHHHHHHhCCchHHHHHHHH
Confidence            32111  121111222333333222333333333211110 0               01122467789999998887777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHhHHHHHHHHHHhc--CC
Q 012315          331 FCHNWGTFILLTWMPTYYNQ-------------------------------------IMQSIGFLGPAFFLTQLSH--VD  371 (466)
Q Consensus       331 ~~~~~~~~~~~~~~~~~l~~-------------------------------------~~~~~~~~~~~~~~~~~~~--~~  371 (466)
                      ++............+.|+++                                     .....+.++..+....+..  ..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~  317 (448)
T PRK09848        238 LCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVW  317 (448)
T ss_pred             HHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCch
Confidence            77666666655555555443                                     1112222222222122212  12


Q ss_pred             chHHHHHHHHHHhhhhhhhhhhhhhhhcccCc--------cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 012315          372 SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP--------RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW  437 (466)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--------~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~  437 (466)
                      +.+......++.+.+.+...+...+...+..+        +..|..+|+.+....+|..+++.+.|.+.+..||
T Consensus       318 ~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        318 SLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            33444444444444445555555555555443        2469999999999999999999999999887665

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.75  E-value=1.1e-15  Score=151.40  Aligned_cols=318  Identities=12%  Similarity=0.030  Sum_probs=194.0

Q ss_pred             HHHHHHhhhhhhhhHHhHh-hhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhc----ccCc-chHHHHHHHHHHHHH
Q 012315          110 FSAFLLCNMDRVNMSIAIL-PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD----TVGG-KAVLGFGVVWWSIAT  183 (466)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~-r~~~~~~~~~~~~~~  183 (466)
                      .++.+...+....+.++++ ++.+.+|+++.++|.+..+..+..++..|+.|+++|    |+|| |+.++++.+..+++.
T Consensus        12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVL   91 (473)
T ss_pred             ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence            3444444455555555544 477778999999999999999999999999999999    5698 566667888878777


Q ss_pred             HHHHHHhhh--c--hhHHHHHHHHHHhhhccchhhHHHHHhccc-CCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc---
Q 012315          184 ALTPVAAKL--G--LPFLLVVRVFMGIGEGVAMPAMNNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIH---  255 (466)
Q Consensus       184 ~~~~~~~~~--~--~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~---  255 (466)
                      +++...+..  +  ++.+++..++.+++.........++..|.. ++++|.+..++-..+.++|..+.+.+...+.+   
T Consensus        92 ~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g  171 (473)
T PRK10429         92 FLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVG  171 (473)
T ss_pred             HHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            666443311  1  234455566777888888888899999998 57899999998777777776666555443322   


Q ss_pred             ----ccCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHH
Q 012315          256 ----RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF  331 (466)
Q Consensus       256 ----~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (466)
                          ..+|+....+.+++.++..+..++..+|++.......++          +++...+..++.+++||.++.+++..+
T Consensus       172 ~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~----------~~~~~~~~~~~~~~~n~~~~~ll~~~~  241 (473)
T PRK10429        172 GGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAE----------GSHLTLKDIVALIYKNDQLSCLLGMAL  241 (473)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccccccc----------ccCCCHHHHHHHHhcCHHHHHHHHHHH
Confidence                124666666666665555555544444432211100000          001111223556678888877776666


Q ss_pred             HHHHHHHHHHHHHHHHHHH------------------------------------HHHHHHhHHHH---HHHHHH--hcC
Q 012315          332 CHNWGTFILLTWMPTYYNQ------------------------------------IMQSIGFLGPA---FFLTQL--SHV  370 (466)
Q Consensus       332 ~~~~~~~~~~~~~~~~l~~------------------------------------~~~~~~~~~~~---~~~~~~--~~~  370 (466)
                      +..........+.+.|.+.                                    .....+..+..   +.....  ...
T Consensus       242 ~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~  321 (473)
T PRK10429        242 AYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAP  321 (473)
T ss_pred             HHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            6555444443333322211                                    11111111111   111111  112


Q ss_pred             CchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc--------cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 012315          371 DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP--------RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW  437 (466)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--------~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~  437 (466)
                      .+.+..++..++.+...+.......++..+..+        +..|..+|.......+|..+++.+.|++.+..||
T Consensus       322 ~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        322 HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            334444444444445555555555666655532        3457799999999999999999999999987666

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.75  E-value=7.9e-16  Score=144.66  Aligned_cols=176  Identities=20%  Similarity=0.292  Sum_probs=142.7

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHh-HhhhhhccC----CChhhHHHHHHHHHHHHHHHHhhhhhhhcc-cCcchHHHHHHHH
Q 012315          105 IVVLCFSAFLLCNMDRVNMSIA-ILPMSAEFN----WNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVW  178 (466)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~  178 (466)
                      .+..++..-+..-++.+..... .-++..+++    +|+++..-+.+.+..-.-+..+++||++|| +|+|+.++.|.++
T Consensus        22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail  101 (498)
T COG3104          22 GLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAIL  101 (498)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            3445555555555554444333 333444444    999999888888888888899999999999 5999999999999


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCC--chhHHHHHHHHHHHhHHHHHhhhHHHhhcc
Q 012315          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA--ERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (466)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~  256 (466)
                      +++|.++.+.....+...++++..+.++|.|+.-+...++++|.+|++  +|...++++.++.++|+.++|.+.+++.++
T Consensus       102 ~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~  181 (498)
T COG3104         102 MAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN  181 (498)
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh
Confidence            999999998873116778899999999999999999999999999864  577889999999999999999999999999


Q ss_pred             cCchHHHHHHhHHHHHHHHHHhhh
Q 012315          257 FGWPSVFYSFGSLGTVWFTVWLSK  280 (466)
Q Consensus       257 ~gw~~~~~~~~~~~~~~~~~~~~~  280 (466)
                      +||...|...++-..+.++..+..
T Consensus       182 ~g~~~gF~~aavGm~~gl~~f~~~  205 (498)
T COG3104         182 YGWHVGFGLAAVGMIIGLVIFLLG  205 (498)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999998887766666555443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.73  E-value=1.3e-16  Score=151.60  Aligned_cols=188  Identities=18%  Similarity=0.229  Sum_probs=151.9

Q ss_pred             CchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhc--cCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCc-chHHHHHH
Q 012315          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAE--FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG-KAVLGFGV  176 (466)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~  176 (466)
                      +.+|+.+.+..+..++.....+++.+..-++.++  .+.+.+..|++.++..++.+++++..|+...|.+. |+.++.+.
T Consensus        30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~  109 (488)
T KOG2325|consen   30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF  109 (488)
T ss_pred             CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence            4578888899999999988888877765555555  67788889999999999999999999999999987 88999999


Q ss_pred             HHHHHHHHHH-HHHhh--hchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHh
Q 012315          177 VWWSIATALT-PVAAK--LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL  253 (466)
Q Consensus       177 ~~~~~~~~~~-~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l  253 (466)
                      +++.++.+++ ++...  ...+.++++|++.|+|.+. .....+++++....++|.++++....+..+|.++||.+...+
T Consensus       110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence            9999999888 44432  1467888999999999774 678899999988889999999999998899999999888766


Q ss_pred             hcc--cC-----------chHHHHHHhHHHHHHHHHHhhhcccCCCCC
Q 012315          254 IHR--FG-----------WPSVFYSFGSLGTVWFTVWLSKAHSSPAED  288 (466)
Q Consensus       254 ~~~--~g-----------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (466)
                      ...  -|           +..+-|+.+++.++.++......+|..+..
T Consensus       189 ~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  189 TPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             hhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence            531  11           345667777777777777777777765544

>PRK11462 putative transporter; Provisional

Probab=99.69  E-value=8.4e-14  Score=137.14  Aligned_cols=311  Identities=10%  Similarity=0.035  Sum_probs=185.8

Q ss_pred             HHHHHhhhhhhhhHHh-HhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcc----cCcch-HHHHHHHHHHHHHH
Q 012315          111 SAFLLCNMDRVNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGKA-VLGFGVVWWSIATA  184 (466)
Q Consensus       111 ~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~-~~~~~~~~~~~~~~  184 (466)
                      ++.+.........+.. ...+.+.+|+++..+|.+..+.-+--++..|+.|.++||    +|||| .++++.+.++++.+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            3444444444444544 444778899999999999999999999999999999997    68765 55577778888877


Q ss_pred             HHHHHhhhc----hhHHHHHHHHHHhhhccchhhHHHHHhcccC-CCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc---
Q 012315          185 LTPVAAKLG----LPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHR---  256 (466)
Q Consensus       185 ~~~~~~~~~----~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~---  256 (466)
                      ++...+..+    ...+.+.-++..++.........++..|..+ +++|.+..++-..+..+|..+++.+...+.+.   
T Consensus        96 llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~  175 (460)
T PRK11462         96 LAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGG  175 (460)
T ss_pred             HHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            766554211    3345555667788888888888899999887 68999999999999999988887776555443   


Q ss_pred             ----cCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHH
Q 012315          257 ----FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFC  332 (466)
Q Consensus       257 ----~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (466)
                          .||+....+.+++.+++..+.+...+|+++.+++ +..               .+..++.+++||.++.+....++
T Consensus       176 ~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~-~~~---------------~~~~l~~~~~Nk~~~~l~~~~~~  239 (460)
T PRK11462        176 DNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPT-TTS---------------MREDLRDIWQNDQWRIVGLLTIF  239 (460)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCcc-CCC---------------HHHHHHHHhCChHHHHHHHHHHH
Confidence                2577777777766666555544444443222111 000               11235567788887666544444


Q ss_pred             HHHHHHHHH---HHHHHHHHH---------------------------------HHHHHHhH-HHHHHHHH-HhcCCchH
Q 012315          333 HNWGTFILL---TWMPTYYNQ---------------------------------IMQSIGFL-GPAFFLTQ-LSHVDSPA  374 (466)
Q Consensus       333 ~~~~~~~~~---~~~~~~l~~---------------------------------~~~~~~~~-~~~~~~~~-~~~~~~~~  374 (466)
                      .........   .+...|...                                 .....+.. .....+.. .....+.+
T Consensus       240 ~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (460)
T PRK11462        240 NILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASI  319 (460)
T ss_pred             HHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHH
Confidence            333322221   111111111                                 01010111 11111111 11111122


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhcccCc--------cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 012315          375 MAVLCMACSQGTDAFSQSGLYSNHQDIAP--------RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW  437 (466)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--------~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~  437 (466)
                      ...+..++.+++.+...+..+....+..+        +..|..++.......+|..+++.+.|.+.+..||
T Consensus       320 ~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        320 TMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            22222222333333334443444444332        2346667888889999999999999999887666

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.68  E-value=1.3e-13  Score=127.36  Aligned_cols=319  Identities=15%  Similarity=0.157  Sum_probs=213.2

Q ss_pred             hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccC-----cchH-HHHHHHHHHHHHHHHHHHh----h-------h
Q 012315          130 MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG-----GKAV-LGFGVVWWSIATALTPVAA----K-------L  192 (466)
Q Consensus       130 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~~-~~~~~~~~~~~~~~~~~~~----~-------~  192 (466)
                      +..|++++..-.+.+.++..+... ..+.+|+.+|+.+     ||.. +..|.++...+..+..++.    .       +
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            567899999999999999988777 5999999999998     7754 4466677666665555432    1       1


Q ss_pred             c-hh--HHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHH---H
Q 012315          193 G-LP--FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS---F  266 (466)
Q Consensus       193 ~-~~--~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~---~  266 (466)
                      . .+  ...+...+.|+|.+...+...+++.|..|+++|+++.++.....-+|.+++..+.+.+.+.+.-.-...+   .
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~  164 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV  164 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence            1 12  2334466789999999999999999999999999999999999999999999999999887764333322   2


Q ss_pred             hHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (466)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (466)
                      +++.++..++..+ ..|++..+...          ..+++++.....++++..+|+...+....++...+++.-...+-+
T Consensus       165 a~i~~~l~~ia~w-g~E~r~~~~~~----------~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEP  233 (403)
T PF03209_consen  165 ALIALLLNLIALW-GQEPRRSRRAA----------AAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEP  233 (403)
T ss_pred             HHHHHHHHHHHHH-hcccCCccccc----------CCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCC
Confidence            2222222222222 22222221110          001111222335777888888877777777776666666666666


Q ss_pred             HHHH--------------------------------------HHHHHHhHH---HHHHHHHHhcCCchHHHHHHHHHHhh
Q 012315          347 YYNQ--------------------------------------IMQSIGFLG---PAFFLTQLSHVDSPAMAVLCMACSQG  385 (466)
Q Consensus       347 ~l~~--------------------------------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (466)
                      |-.+                                      .....++..   +...+.......+.+.+....++.++
T Consensus       234 ygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~  313 (403)
T PF03209_consen  234 YGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGL  313 (403)
T ss_pred             chhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            6555                                      222222222   22233334445566666666677676


Q ss_pred             hhhhhhhhhhhhhcccC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc----------CcchhHHHHHHHHHHHHHHH
Q 012315          386 TDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQH----------GSWDDVFKVSVGLYLVGTAV  454 (466)
Q Consensus       386 ~~~~~~~~~~~~~~~~~-p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~----------~g~~~~~~~~~~~~~~~~~~  454 (466)
                      +.+.......+.+.+.. +++.|..+|.....+.+...++..++|.+.|.          .+|...|.+-++..++++++
T Consensus       314 g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l  393 (403)
T PF03209_consen  314 GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL  393 (403)
T ss_pred             hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence            66666665555555555 57999999999999999999999999999875          24667777777777766665


Q ss_pred             HHHhcC
Q 012315          455 WNLFST  460 (466)
Q Consensus       455 ~~~~~~  460 (466)
                      ..-+.+
T Consensus       394 l~~l~~  399 (403)
T PF03209_consen  394 LGRLDR  399 (403)
T ss_pred             HHHhhh
Confidence            554433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.65  E-value=2.3e-13  Score=129.39  Aligned_cols=320  Identities=16%  Similarity=0.113  Sum_probs=222.2

Q ss_pred             HHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcc----cCcc-hHHHHHHHHHHH
Q 012315          108 LCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGK-AVLGFGVVWWSI  181 (466)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r-~~~~~~~~~~~~  181 (466)
                      ...++-+............+.. +.+.+|+++..+|.+..+.-+.-++.-|+.|.++||    +||+ +.++.+.+-.++
T Consensus        16 ~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i   95 (467)
T COG2211          16 GYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAI   95 (467)
T ss_pred             hhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHH
Confidence            3444444444444555555544 788899999999999999999999999999999997    5765 456677788888


Q ss_pred             HHHHHHHHhh----hchhHHHHHHHHHHhhhccchhhHHHHHhcccC-CCchhHHHHHHHHHHHhHHHHHhhhHHHhhc-
Q 012315          182 ATALTPVAAK----LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIH-  255 (466)
Q Consensus       182 ~~~~~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~-  255 (466)
                      ...++..+++    .+....++..++.+++.........++.++..+ ++||.+..++-+.+.++|..+...+.+.+.. 
T Consensus        96 ~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~  175 (467)
T COG2211          96 VAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKL  175 (467)
T ss_pred             HHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888887773    234556667888899999988888899988886 5899999999999999997776666655543 


Q ss_pred             ------ccCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHH
Q 012315          256 ------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVS  329 (466)
Q Consensus       256 ------~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (466)
                            ..||+....+.+++..+..+.+++..+|+..+....++..+           .+.+..+..+++|+.+..+++.
T Consensus       176 ~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~-----------~~~~~~~~~~~~Nrp~~~~l~~  244 (467)
T COG2211         176 FGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVK-----------LKLKDSFLLIFKNRPLLLLLLM  244 (467)
T ss_pred             hCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccccc-----------ccHHHHHHHHHccchHHHHHHH
Confidence                  34788888888888888777777776666543222111011           0111234567899998888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHhHHHHHHHHHH--hcC
Q 012315          330 HFCHNWGTFILLTWMPTYYNQ-------------------------------------IMQSIGFLGPAFFLTQL--SHV  370 (466)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~l~~-------------------------------------~~~~~~~~~~~~~~~~~--~~~  370 (466)
                      .++...+.....+....|.+.                                     .....+.++..+....+  ...
T Consensus       245 ~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~  324 (467)
T COG2211         245 NLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA  324 (467)
T ss_pred             HHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC
Confidence            666666555555444444333                                     12222222222222222  223


Q ss_pred             CchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc--------cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcch
Q 012315          371 DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP--------RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWD  438 (466)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--------~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~  438 (466)
                      ++.++.++..++.+.+.+...+..++...+..+        +..|...|.+..+.-+|.+++..+.|++.+..||.
T Consensus       325 ~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv  400 (467)
T COG2211         325 GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYV  400 (467)
T ss_pred             cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            445666666677777777778888887766432        35689999999999999999999999999886653

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.64  E-value=1.8e-14  Score=142.54  Aligned_cols=247  Identities=17%  Similarity=0.222  Sum_probs=194.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHH
Q 012315          104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT  183 (466)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  183 (466)
                      ..+.+..+..+..++....+...+..+.+.|+++..+.|++.+.+-++..+...+..+..-|..|-+++-+|.++++++.
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            34555666667777777777778889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh------------------h-----------------------------c--hh-HHHHHHHHHHhhhccchh
Q 012315          184 ALTPVAAK------------------L-----------------------------G--LP-FLLVVRVFMGIGEGVAMP  213 (466)
Q Consensus       184 ~~~~~~~~------------------~-----------------------------~--~~-~l~~~~~l~G~~~~~~~~  213 (466)
                      +++++-+-                  .                             +  ++ .++++.++.|+|....++
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t  256 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT  256 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence            88865310                  0                             0  23 456679999999999999


Q ss_pred             hHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc------------------cC-chHHHHHHhHHHHHHH
Q 012315          214 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR------------------FG-WPSVFYSFGSLGTVWF  274 (466)
Q Consensus       214 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~------------------~g-w~~~~~~~~~~~~~~~  274 (466)
                      ...+|+-|...+++-...+|+......+|-++|-++++++...                  .| |..-|++.+.+.++..
T Consensus       257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a  336 (735)
T KOG3626|consen  257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA  336 (735)
T ss_pred             CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987642                  13 7778888888888888


Q ss_pred             HHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCC---------CCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          275 TVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPV---------KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  345 (466)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (466)
                      +.++++.++.|+..++....+.+..+.+.+..+++         -....+.+++||.+...++...+....+.++.+++|
T Consensus       337 ~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlP  416 (735)
T KOG3626|consen  337 VPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLP  416 (735)
T ss_pred             HHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhH
Confidence            88777766666544321111111111111101111         123467789999999999999999999999999999


Q ss_pred             HHHHH
Q 012315          346 TYYNQ  350 (466)
Q Consensus       346 ~~l~~  350 (466)
                      -|+++
T Consensus       417 KyLE~  421 (735)
T KOG3626|consen  417 KYLET  421 (735)
T ss_pred             HHHHH
Confidence            99998

>TIGR00889 2A0110 nucleoside transporter

Probab=99.64  E-value=2.3e-15  Score=146.63  Aligned_cols=163  Identities=17%  Similarity=0.220  Sum_probs=134.8

Q ss_pred             hHHhHhhhhhccCCC--------hhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhh--h
Q 012315          123 MSIAILPMSAEFNWN--------PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK--L  192 (466)
Q Consensus       123 ~~~~~~~~~~~~~~s--------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~  192 (466)
                      .....+.+.++.|.+        ....+...++..++.+++.++.|+++||+|+|+++..+.++.+++..+......  .
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~  306 (418)
T TIGR00889       227 TNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYF  306 (418)
T ss_pred             HHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchh
Confidence            334456555666644        366799999999999999999999999999999999999999888777666321  1


Q ss_pred             chhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHH-HHHHhHHHHHhhhHHHhhcc------cCchHHHHH
Q 012315          193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHR------FGWPSVFYS  265 (466)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~ig~~~~~~l~~~------~gw~~~~~~  265 (466)
                      +.+.+++.+++.|++.+...+....++.|++|+++|++++|+.+ ...++|.++||+++|++.++      +||+.+|.+
T Consensus       307 ~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~  386 (418)
T TIGR00889       307 GYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLF  386 (418)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHH
Confidence            24566778999999999888888999999999999999999997 67889999999999999987      469999999


Q ss_pred             HhHHHHHHHHHHhhhcccCC
Q 012315          266 FGSLGTVWFTVWLSKAHSSP  285 (466)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~  285 (466)
                      .+++.++..++..++.+++.
T Consensus       387 ~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       387 FAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHHHHHHHHHhCCcc
Confidence            88888887777777776553

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.63  E-value=2.3e-15  Score=123.05  Aligned_cols=136  Identities=24%  Similarity=0.419  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccC
Q 012315          145 QSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP  224 (466)
Q Consensus       145 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~  224 (466)
                      .+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.+  +++.+.+.+++.|++.+...+....++.|.+|
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS--NITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            3456778889999999999999999999999999999988888887  88999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhhhcc
Q 012315          225 VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH  282 (466)
Q Consensus       225 ~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~  282 (466)
                      +++|++.+++.+....+|..++|.+.+.+.+..+|++.+++.+++.++..+...+..|
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP  139 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999999999999999999999999999888777776666555544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.62  E-value=6.6e-15  Score=141.74  Aligned_cols=151  Identities=11%  Similarity=0.075  Sum_probs=128.7

Q ss_pred             hHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 012315          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (466)
Q Consensus       123 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (466)
                      .....+.+.+++|.+..+.+++.+...++..+++++.|++.||+|||+.+.++.++.+++.++..+.+..+...++...+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (377)
T TIGR00890       224 LIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA  303 (377)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            33445556778899999999999999999999999999999999999999999998888888777765212233445677


Q ss_pred             HHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHH
Q 012315          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW  273 (466)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~  273 (466)
                      +.|++.+...+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..||+..|.+.+++.++.
T Consensus       304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            78888888888888999999999999999999999999999999999999999999999999887766654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.62  E-value=3.4e-14  Score=138.15  Aligned_cols=160  Identities=18%  Similarity=0.181  Sum_probs=133.2

Q ss_pred             hhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 012315          122 NMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR  201 (466)
Q Consensus       122 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  201 (466)
                      ......+.+.++.|.  .+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.+  +.+.+++..
T Consensus       234 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  309 (399)
T PRK05122        234 TIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP--SPWMALIGA  309 (399)
T ss_pred             HHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHH
Confidence            344445555555665  3456777888899999999999999999999999999888888888887777  778888889


Q ss_pred             HHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhhhc
Q 012315          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA  281 (466)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~  281 (466)
                      ++.|++.+..++.....+.+.+|+++|+++.|+++....+|..+++.+.|++.+..||+..|++.+++.++..+..+...
T Consensus       310 ~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (399)
T PRK05122        310 ALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY  389 (399)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999888888888889999999999999999999999999999999999999999999988888777666655554


Q ss_pred             ccCC
Q 012315          282 HSSP  285 (466)
Q Consensus       282 ~~~~  285 (466)
                      ++++
T Consensus       390 ~~~~  393 (399)
T PRK05122        390 RRAP  393 (399)
T ss_pred             cccc
Confidence            4433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.61  E-value=5.1e-14  Score=136.45  Aligned_cols=154  Identities=13%  Similarity=0.094  Sum_probs=126.0

Q ss_pred             hHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 012315          123 MSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR  201 (466)
Q Consensus       123 ~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  201 (466)
                      +....|. +.+++|+++.+.+++.+...++.+++.++.|+++||+|+|+.+..+.+...+......+.+  +.+.+++.+
T Consensus       235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~  312 (393)
T PRK15011        235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAH--SPAILLGLQ  312 (393)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence            3445555 5577899999999998888888888999999999999999988877766665555555555  777777888


Q ss_pred             HHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhh
Q 012315          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS  279 (466)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  279 (466)
                      ++.+++.+...+....+..|.+| ++|++++++++...++|..++|.++|.+.+.+||+..|++.+++.++..+..++
T Consensus       313 ~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        313 LLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            88888877777777888899987 569999999999999999999999999999999999998877777665555443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.61  E-value=9.8e-14  Score=138.31  Aligned_cols=171  Identities=12%  Similarity=0.097  Sum_probs=124.7

Q ss_pred             hhhhhhhhHHhHhhhh-hccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHH-HHHHhhhc
Q 012315          116 CNMDRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL-TPVAAKLG  193 (466)
Q Consensus       116 ~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~~~~~~~  193 (466)
                      .....+.+....|.+. +++|.+..+.++......++..++.++.|+++||+|||+.+..+.++..++.+. .......+
T Consensus       262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  341 (490)
T PRK10642        262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNV  341 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3344445555667654 678999888888888899999999999999999999999988887654433322 22222115


Q ss_pred             hhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC-chHHHHHHhHHHHH
Q 012315          194 LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTV  272 (466)
Q Consensus       194 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-w~~~~~~~~~~~~~  272 (466)
                      ...+++++++.|++.+...+....++.+.+|++.|++++|+......+++.++|.+.+++.+..+ |+.++++..+.+++
T Consensus       342 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i  421 (490)
T PRK10642        342 IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVI  421 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            66777888988888777777788889999999999999998555556667889999999887654 77777666666555


Q ss_pred             HHHHHhhhcccCCCC
Q 012315          273 WFTVWLSKAHSSPAE  287 (466)
Q Consensus       273 ~~~~~~~~~~~~~~~  287 (466)
                      .++..+ +.||+++.
T Consensus       422 ~~~~~~-~~pes~~~  435 (490)
T PRK10642        422 GLITGV-TMKETANR  435 (490)
T ss_pred             HHHHHH-HhccccCC
Confidence            555444 44666543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.60  E-value=2.5e-14  Score=146.05  Aligned_cols=139  Identities=11%  Similarity=0.036  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhc
Q 012315          142 GLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSK  221 (466)
Q Consensus       142 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~  221 (466)
                      .+...+..++.+++.++.|+++||+|||++++++.++.+++.++.++.+  +.+.+++.+++.|++.+..++...++++|
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~--s~~~ll~~~~l~g~~~~~~~~~~~a~~aE  675 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN--SESAMIALLCLFGGLSIAAWNALDVLTVE  675 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445677789999999999999999999999999999999999988888  77778888888888888888999999999


Q ss_pred             ccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhhhcccC
Q 012315          222 WVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSS  284 (466)
Q Consensus       222 ~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~  284 (466)
                      ++|.++|++++|+.++...+|.++||++++.+.+. +...+|++.+++.++.+++.++ .||.
T Consensus       676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~-LPET  736 (742)
T TIGR01299       676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALK-LPDT  736 (742)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh-CCCC
Confidence            99999999999999999999999999999988764 4566777777776665555444 3543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.59  E-value=1.4e-14  Score=141.70  Aligned_cols=149  Identities=10%  Similarity=0.074  Sum_probs=129.9

Q ss_pred             ccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccch
Q 012315          133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAM  212 (466)
Q Consensus       133 ~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~  212 (466)
                      +.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.++.+  +.+.+++.+++.|++.+...
T Consensus       256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~l~g~~~~~~~  333 (420)
T PRK09528        256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT--GPLEVSILKLLHAFEVPFLL  333 (420)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHH
Confidence            3466778899999999999999999999999999999999999999999888888888  88888888999999988877


Q ss_pred             hhHHHHHhcccCCCchhHHHHH-HHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhhhccc
Q 012315          213 PAMNNILSKWVPVAERSRSLAL-VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHS  283 (466)
Q Consensus       213 ~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~  283 (466)
                      +....++.+.+|++.++...+. ++....+|.+++|.+.|++.+.+||+..|.+.+++.++..++.++..++
T Consensus       334 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        334 VGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8888999999999998887665 6778899999999999999999999999999888877766655555444

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.59  E-value=4.8e-14  Score=137.43  Aligned_cols=158  Identities=15%  Similarity=0.019  Sum_probs=129.8

Q ss_pred             hhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 012315          121 VNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVV  200 (466)
Q Consensus       121 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  200 (466)
                      .......|.+.++.|.+..+.+++.+...++..++.++.|++.||+|+|+.+..+.+...++.++..+.+  +.+.+.+.
T Consensus       237 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  314 (406)
T PRK11551        237 YFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAP--SFAGMLLA  314 (406)
T ss_pred             HHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHH
Confidence            3444557777788899999999999999999999999999999999999999887777777776666666  77777777


Q ss_pred             HHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC-chHHHHHHhHHHHHHHHHHhh
Q 012315          201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFTVWLS  279 (466)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~~  279 (466)
                      .++.|++.+...+...+++.|.+|+++|++++|+.+....+|..+||.++|++.+..+ |...+++.....++..+..+.
T Consensus       315 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        315 GFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            8888888877888899999999999999999999999999999999999999988754 555565555554444444443


Q ss_pred             h
Q 012315          280 K  280 (466)
Q Consensus       280 ~  280 (466)
                      .
T Consensus       395 ~  395 (406)
T PRK11551        395 L  395 (406)
T ss_pred             H
Confidence            3

>PRK12382 putative transporter; Provisional

Probab=99.57  E-value=1.3e-13  Score=133.57  Aligned_cols=156  Identities=19%  Similarity=0.193  Sum_probs=131.9

Q ss_pred             hhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 012315          121 VNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVV  200 (466)
Q Consensus       121 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  200 (466)
                      .......|.+.++.|.+.  .++....+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.+  +.+.+++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  308 (392)
T PRK12382        233 AVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP--TAWVALAG  308 (392)
T ss_pred             hHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc--cHHHHHHH
Confidence            344445555556666653  56667778888899999999999999999999999998888888877777  77888888


Q ss_pred             HHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhhh
Q 012315          201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSK  280 (466)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  280 (466)
                      .++.|++.+...+...+.+.+.+|+++||+++|+++....+|..++|.+.+++.+..||+..|.+.+++.++..+..+..
T Consensus       309 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        309 AALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            99999999888888888999999999999999999999999999999999999999999999999888877766655544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.57  E-value=1.3e-13  Score=133.10  Aligned_cols=160  Identities=12%  Similarity=0.032  Sum_probs=138.5

Q ss_pred             HHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh
Q 012315          113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL  192 (466)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  192 (466)
                      .++.......+....|.+.+++|.++.++|++.++..++.++..++.+++.||+|.|+.+.++.+...+..++.++.+  
T Consensus       214 ~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~--  291 (382)
T TIGR00902       214 VCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIE--  291 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHh--
Confidence            333344444555566776678999999999999999999999999999999999999999999999999999999888  


Q ss_pred             chhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHH-HHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHH
Q 012315          193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT  271 (466)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~  271 (466)
                      +.+.+++.+++.|+..+...+....++.+. |+++|++..++++ ...++|..+|+.++|++.+++|+ ..|++.+++.+
T Consensus       292 ~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~  369 (382)
T TIGR00902       292 AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAA  369 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHH
Confidence            899999999999999999999999999998 8899999999986 57789999999999999999996 66777777776


Q ss_pred             HHHHH
Q 012315          272 VWFTV  276 (466)
Q Consensus       272 ~~~~~  276 (466)
                      +..++
T Consensus       370 ~~~~~  374 (382)
T TIGR00902       370 AAFFL  374 (382)
T ss_pred             HHHHH
Confidence            55443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.57  E-value=4.8e-14  Score=137.49  Aligned_cols=160  Identities=17%  Similarity=0.165  Sum_probs=131.8

Q ss_pred             hhHHhHhhhhhccCCChh----hHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHH
Q 012315          122 NMSIAILPMSAEFNWNPA----TVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFL  197 (466)
Q Consensus       122 ~~~~~~~~~~~~~~~s~~----~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l  197 (466)
                      ...+..+.+.++.+.+..    ..+.+.++..++..++.+..|++.||+|||+.+..+.++..++.+...+.+  +.+.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  314 (408)
T PRK09874        237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ--TPLQL  314 (408)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc--cHHHH
Confidence            344455555444332322    346667777888889999999999999999999999888888777777777  78888


Q ss_pred             HHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHH
Q 012315          198 LVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW  277 (466)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~  277 (466)
                      ++.+++.|++.+...+...+.+.+..|++++|+.+++++....+|..+||.++|++.+..||+..|++.+++.++..+..
T Consensus       315 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  394 (408)
T PRK09874        315 GILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYS  394 (408)
T ss_pred             HHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999988888777666


Q ss_pred             hhhccc
Q 012315          278 LSKAHS  283 (466)
Q Consensus       278 ~~~~~~  283 (466)
                      ++..++
T Consensus       395 ~~~~~~  400 (408)
T PRK09874        395 WNSLRR  400 (408)
T ss_pred             HHHHHH
Confidence            554433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.57  E-value=2.7e-14  Score=131.26  Aligned_cols=180  Identities=13%  Similarity=0.052  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhccc--CcchH-HHHHHHH
Q 012315          103 WFIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAV-LGFGVVW  178 (466)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~-~~~~~~~  178 (466)
                      .+.++.++++.++.+..++.+.-..|. +.|..|+|..+.++..+.+-++.+.+.+++||++||+  |||.. -++.++.
T Consensus       251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~  330 (448)
T COG2271         251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL  330 (448)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            456777888888888888888877777 6677899999999999999999999999999999996  66654 4466667


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHh-HHHHHhhhHHHhhccc
Q 012315          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHRF  257 (466)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~ig~~~~~~l~~~~  257 (466)
                      ..++.+...+++..|+++..++.++.|+..-+..-.......|..|++--|++.|+.+.+..+ |...+....+++.|.+
T Consensus       331 i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~  410 (448)
T COG2271         331 ITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTW  410 (448)
T ss_pred             HHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecC
Confidence            777777777877556788888899999988777778888899999999999999999999999 9999999999999999


Q ss_pred             CchHHHHHHhHHHHHHHHHHhhhcc
Q 012315          258 GWPSVFYSFGSLGTVWFTVWLSKAH  282 (466)
Q Consensus       258 gw~~~~~~~~~~~~~~~~~~~~~~~  282 (466)
                      ||...|.+..+.++++.++......
T Consensus       411 gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         411 GWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHh
Confidence            9999999888777776665554443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.56  E-value=2e-13  Score=132.30  Aligned_cols=152  Identities=15%  Similarity=0.066  Sum_probs=123.8

Q ss_pred             HhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHH-HHHHHhhhchhHHHHHHHHHH
Q 012315          127 ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA-LTPVAAKLGLPFLLVVRVFMG  205 (466)
Q Consensus       127 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~l~G  205 (466)
                      .|.+.+++|.+..+.+++.+...++.++++++.|++.||+|+|+.. .+..+..++.. +....+  +.+.+++..++.|
T Consensus       229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~g  305 (390)
T PRK03545        229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAAN--SEWHLSVLSIFWG  305 (390)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHH
Confidence            3446666899999999999999999999999999999999988654 44444444433 334445  6777888888999


Q ss_pred             hhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhhhcc
Q 012315          206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH  282 (466)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~  282 (466)
                      ++.+...+.....+.+..| ++|++++|+++....+|..+||.++|++.+++|++..|++.+++.++..+......+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            9887777777888888876 689999999999999999999999999999999999999998888777766655544

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.56  E-value=1.6e-13  Score=130.65  Aligned_cols=164  Identities=25%  Similarity=0.389  Sum_probs=145.7

Q ss_pred             HHHhhhhhhhhHHhHhhhhhc-cCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcch-HHHHHHHHHHHHHHHHHHHh
Q 012315          113 FLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKA-VLGFGVVWWSIATALTPVAA  190 (466)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~~~~~~  190 (466)
                      .+.............|.+.++ +|.+..+.++..+...++..++.++.|++.||+|+|+ .+..+.++..++.++..+.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  263 (352)
T cd06174         184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP  263 (352)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            344444455556667775555 4999999999999999999999999999999999999 99999999999999998888


Q ss_pred             hhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHH
Q 012315          191 KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLG  270 (466)
Q Consensus       191 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~  270 (466)
                        +.+.+++..++.|++.+...+...+++.|..|+++|++.+|+.+...++|..+++.+.+.+.+..+|+..+.+.+++.
T Consensus       264 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~  341 (352)
T cd06174         264 --SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALA  341 (352)
T ss_pred             --cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHH
Confidence              888889999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHh
Q 012315          271 TVWFTVWL  278 (466)
Q Consensus       271 ~~~~~~~~  278 (466)
                      ++..+...
T Consensus       342 ~i~~i~~~  349 (352)
T cd06174         342 LLAALLLL  349 (352)
T ss_pred             HHHHHHhe
Confidence            77666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.56  E-value=2.5e-14  Score=142.39  Aligned_cols=182  Identities=12%  Similarity=0.053  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHH
Q 012315          103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA  182 (466)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  182 (466)
                      +..+....+..+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  362 (481)
T TIGR00879       283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAIC  362 (481)
T ss_pred             HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            34444444444544444455566678888899999988999999999999999999999999999999999998888888


Q ss_pred             HHHHHHH---hhhc-----hhHHH-HHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHh
Q 012315          183 TALTPVA---AKLG-----LPFLL-VVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL  253 (466)
Q Consensus       183 ~~~~~~~---~~~~-----~~~l~-~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l  253 (466)
                      .++..+.   ...+     .+..+ ...++.+.......+....++.|.+|+++|++++++.+...++|.+++|.+.+++
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~  442 (481)
T TIGR00879       363 LFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTM  442 (481)
T ss_pred             HHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766531   1111     22222 2222222222233466677889999999999999999999999999999999999


Q ss_pred             hcccCchHHHHHHhHHHHHHHHHHhhhcccC
Q 012315          254 IHRFGWPSVFYSFGSLGTVWFTVWLSKAHSS  284 (466)
Q Consensus       254 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~  284 (466)
                      .++.||++.|++.++++++.++...++.++.
T Consensus       443 ~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       443 LESIGVGGVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             HHhcCccceehhHHHHHHHHHHHHheecccC
Confidence            9999999999998888887777666655543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.56  E-value=1.6e-13  Score=136.01  Aligned_cols=174  Identities=13%  Similarity=0.041  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHH
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (466)
                      ++...+..++............|. +.+++|++..+.++..+...++..++.+++|+++||+|+|+.+.....+..++..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~  339 (467)
T PRK09556        260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFT  339 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence            333444444444444445566775 5577999999999999999999999999999999999999887765544444332


Q ss_pred             HHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHh-HHHHHhhhHHHhhc--------
Q 012315          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIH--------  255 (466)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~ig~~~~~~l~~--------  255 (466)
                      +..+....+.+.+.+.+++.|++.............|.+|+++||++.|+.+...++ |..++|.+.|++.+        
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~  419 (467)
T PRK09556        340 LGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPI  419 (467)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccc
Confidence            222222115556667777888654433333446777999999999999999999886 77999999999999        


Q ss_pred             ----ccCchHHHHHHhHHHHHHHHHHhh
Q 012315          256 ----RFGWPSVFYSFGSLGTVWFTVWLS  279 (466)
Q Consensus       256 ----~~gw~~~~~~~~~~~~~~~~~~~~  279 (466)
                          ..||+..|++.+++.++..+..+.
T Consensus       420 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        420 FGYTLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             ccccccChHHHHHHHHHHHHHHHHHHHH
Confidence                678999999887777665554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.55  E-value=2.6e-12  Score=118.58  Aligned_cols=316  Identities=16%  Similarity=0.049  Sum_probs=210.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHH-HHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHhhhccchhhH
Q 012315          138 PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG-FGVVWWSIATALTPVAAKLGL-PFLLVVRVFMGIGEGVAMPAM  215 (466)
Q Consensus       138 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~l~G~~~~~~~~~~  215 (466)
                      .+..|...++..+...+.+|+.|.++|+.|+||... ...++..++..+..+.++.++ +..++...+..++........
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy  136 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY  136 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence            345688889999999999999999999999876555 666666777778888874224 444455777888888888899


Q ss_pred             HHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHH--Hh-h---------------cccCchHHHHHHhHHHHHHHHHH
Q 012315          216 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSP--FL-I---------------HRFGWPSVFYSFGSLGTVWFTVW  277 (466)
Q Consensus       216 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~--~l-~---------------~~~gw~~~~~~~~~~~~~~~~~~  277 (466)
                      .+++.+..++++-++..++-.....+|+.+.-.+.-  .+ .               +...-|.++.+.++-.++..+..
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence            999999999988888887776667777766554431  11 1               22346888888888888888888


Q ss_pred             hhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 012315          278 LSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ-------  350 (466)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------  350 (466)
                      ++..++.++............. ++       -..+++++.+++.+...++..+++.=+..+.......|...       
T Consensus       217 ~~~v~~~~~~~~~~~~~l~~g~-k~-------L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~  288 (438)
T COG2270         217 ILNVHDAEKISSPPPTALRNGF-KE-------LKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSST  288 (438)
T ss_pred             HhcccccccccccchHHHHHHH-HH-------HHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHH
Confidence            7777776543211111111100 00       02246777788888888888888877777777777777774       


Q ss_pred             ------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcc
Q 012315          351 ------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQD  400 (466)
Q Consensus       351 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (466)
                                                    .....++++..+..+..........+.++.++.+.+.+......-++..+
T Consensus       289 ~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~  368 (438)
T COG2270         289 ELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLAR  368 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence                                          00001111111111111111122223333333344444445555555555


Q ss_pred             cCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHHHHHhcCC
Q 012315          401 IAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLFSTG  461 (466)
Q Consensus       401 ~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~  461 (466)
                      ..| ++.++.+|+++..+.....+||.+.+.+.+. ++.+..+....++.+++.++....+.+
T Consensus       369 lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         369 LVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             hCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            555 6999999999999999999999999999998 667788888888888888777766543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.55  E-value=3.6e-13  Score=129.74  Aligned_cols=150  Identities=12%  Similarity=0.070  Sum_probs=126.4

Q ss_pred             hHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 012315          126 AILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFM  204 (466)
Q Consensus       126 ~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  204 (466)
                      ..|. +.+++|.++.+.+++.+...+...++.++.|++.||+|+|+.+.++.++..+......+.+  +.+.+++.+++.
T Consensus       221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  298 (375)
T TIGR00899       221 NMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADN--SLWALLMLQLLN  298 (375)
T ss_pred             hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            3444 5677899999999998888888888899999999999999999888777666666656666  777778888999


Q ss_pred             HhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHh
Q 012315          205 GIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL  278 (466)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  278 (466)
                      |++.+...+....++.|..| +++++++++++...++|..++|.+++.+.+..||+..|++.+++.++..+...
T Consensus       299 g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       299 AIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            99888888888889999987 46779999999999999999999999999999999999988887776665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.54  E-value=2.7e-13  Score=132.52  Aligned_cols=161  Identities=13%  Similarity=0.042  Sum_probs=137.1

Q ss_pred             hHHhHhhhhhc-cCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 012315          123 MSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR  201 (466)
Q Consensus       123 ~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  201 (466)
                      +....|.+.++ +|.+..+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.+  +.+...++.
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~  319 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMP--MWILAVLCL  319 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccc--hHHHHHHHH
Confidence            34456666555 899999999999999999999999999999998888888888888888887777777  777777888


Q ss_pred             HHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhhhc
Q 012315          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA  281 (466)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~  281 (466)
                      ++.|++.+...+...+++.+..|++.||+++|+++....+|..+||.+.|++.+.+|++..+++.+++.++..++.....
T Consensus       320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T PRK10489        320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVL  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhc
Confidence            88999888777788899999999999999999999999999999999999999999999999888877777666665555


Q ss_pred             ccCC
Q 012315          282 HSSP  285 (466)
Q Consensus       282 ~~~~  285 (466)
                      ++.+
T Consensus       400 ~~~~  403 (417)
T PRK10489        400 GELR  403 (417)
T ss_pred             cccc
Confidence            5543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.53  E-value=5.2e-13  Score=129.33  Aligned_cols=169  Identities=15%  Similarity=0.002  Sum_probs=120.8

Q ss_pred             HHHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcch--HHHHHHHH-----
Q 012315          107 VLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKA--VLGFGVVW-----  178 (466)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~--~~~~~~~~-----  178 (466)
                      ....+..+.............|. +.+++|.+..+.+++.+...++..++.++.|++.||+|||+  ........     
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  297 (399)
T TIGR00893       218 WGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGL  297 (399)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence            33344444445555556666666 45668999999999999999999999999999999999996  11111111     


Q ss_pred             -HHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhccc
Q 012315          179 -WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF  257 (466)
Q Consensus       179 -~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~  257 (466)
                       ..+........+  +.+..+....+.+.+.+ ..+...+++.|.+|+++|++++|+.+....+|..++|.+.+++.+..
T Consensus       298 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~  374 (399)
T TIGR00893       298 VLSLLMFATNYVN--IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT  374 (399)
T ss_pred             HHHHHHHHhccch--hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC
Confidence             111111111112  33333333444444444 78899999999999999999999999999999999999999999998


Q ss_pred             C-chHHHHHHhHHHHHHHHHHh
Q 012315          258 G-WPSVFYSFGSLGTVWFTVWL  278 (466)
Q Consensus       258 g-w~~~~~~~~~~~~~~~~~~~  278 (466)
                      | |+..|++.+++.++..+..+
T Consensus       375 g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       375 GSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             CchhHHHHHHHHHHHHHHHHHH
Confidence            8 99999988877776655443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.53  E-value=2.2e-13  Score=136.44  Aligned_cols=151  Identities=12%  Similarity=0.132  Sum_probs=117.9

Q ss_pred             hhHHhHhhhh-hccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 012315          122 NMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVV  200 (466)
Q Consensus       122 ~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  200 (466)
                      .....+|.+. +++|.+..+.+++.+...++..++.++.|+++||+|+|+++..+.++..++.++.......+.+.+.+.
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLL  372 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            3445667765 689999999999999999999999999999999999999988887776666554443331133444444


Q ss_pred             HHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHH
Q 012315          201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV  272 (466)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~  272 (466)
                      .++.+.......+...+++.+.+|+++|++++|+.+....+|..+||.++|.+.+.+||+..+...++...+
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            444444333345677788999999999999999999999999999999999999999999888665544433

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.53  E-value=3e-13  Score=132.76  Aligned_cols=173  Identities=10%  Similarity=0.001  Sum_probs=117.1

Q ss_pred             HHHHHhhhhhhhhHHhHhhhh-hccCCChhhHHHHHHHHHHHHHHHHhhhhhhhccc--CcchHH-HHHHHHHHHHHHHH
Q 012315          111 SAFLLCNMDRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAVL-GFGVVWWSIATALT  186 (466)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~-~~~~~~~~~~~~~~  186 (466)
                      +..+........+....|.+. +++|++..+.++..+.+.++..++.++.|+++||+  ++|+.. ....+...+.....
T Consensus       250 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~  329 (434)
T PRK11663        250 FSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSL  329 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHH
Confidence            333333444444555666655 67899999999999999999999999999999998  333332 22222222222111


Q ss_pred             HHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHH
Q 012315          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (466)
Q Consensus       187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~  266 (466)
                      ...+..+.....+..+..|++.............|.+|+++|++++|+.+....+|..++|.+.+++.+.+||+..|++.
T Consensus       330 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~  409 (434)
T PRK11663        330 WLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVI  409 (434)
T ss_pred             HHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHH
Confidence            11121133333333444454332223334556789999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhhccc
Q 012315          267 GSLGTVWFTVWLSKAHS  283 (466)
Q Consensus       267 ~~~~~~~~~~~~~~~~~  283 (466)
                      +++.++..+..+...++
T Consensus       410 ~~~~~~~~~~~~~~~~~  426 (434)
T PRK11663        410 SIAAGISALLLLPFLNA  426 (434)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            88887776655554433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.53  E-value=1.1e-12  Score=126.99  Aligned_cols=167  Identities=14%  Similarity=0.010  Sum_probs=129.8

Q ss_pred             hhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhH
Q 012315          117 NMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPF  196 (466)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (466)
                      ...........|.+.+++|.+..+.|.+.+.+.++..++.++.|++.||+|||+.+..+..+..++..+....+. +...
T Consensus       218 ~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~  296 (393)
T PRK09705        218 NGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPL-QLPV  296 (393)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccc-hHHH
Confidence            334445555667766678999999999999999999999999999999999999999888887777665544331 2222


Q ss_pred             HHHHHHHHHhhhccchhhHHHHHhcccC-CCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC-chHHHHHHhHHHHHHH
Q 012315          197 LLVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWF  274 (466)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-w~~~~~~~~~~~~~~~  274 (466)
                      +  ..++.|++.+...+.......+..+ ++++++.+|+.+....++..++|.+.|++.+..| |...|.+.++.+++..
T Consensus       297 ~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (393)
T PRK09705        297 L--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLM  374 (393)
T ss_pred             H--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            2  2345688888777877777777775 5789999999999999999999999999999876 7888888777777766


Q ss_pred             HHHhhhcccCCC
Q 012315          275 TVWLSKAHSSPA  286 (466)
Q Consensus       275 ~~~~~~~~~~~~  286 (466)
                      +......||+++
T Consensus       375 ~~~~~~~~~~~~  386 (393)
T PRK09705        375 IITLRFAPARFP  386 (393)
T ss_pred             HHHHHhcccccc
Confidence            665666565543

>PRK03699 putative transporter; Provisional

Probab=99.53  E-value=4.7e-13  Score=129.79  Aligned_cols=166  Identities=12%  Similarity=0.126  Sum_probs=132.8

Q ss_pred             HHHHHhhhhhhhhHHhHhhhh-hccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 012315          111 SAFLLCNMDRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA  189 (466)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  189 (466)
                      +..++.......+....|.+. +++|+|..+.+++.+.+.++..++.++.|+++||+++|+.+.....+..+...+....
T Consensus       212 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~  291 (394)
T PRK03699        212 IAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT  291 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc
Confidence            333333344444555667655 6789999999999999999999999999999999999999988887777766666666


Q ss_pred             hhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHH
Q 012315          190 AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSL  269 (466)
Q Consensus       190 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~  269 (466)
                      +  +.+.+.+..++.|++.+..++...++..+..| +++++..+.......+|..++|.+.|++.+..|++..+++.+++
T Consensus       292 ~--~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~  368 (394)
T PRK03699        292 D--DPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGL  368 (394)
T ss_pred             C--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHH
Confidence            6  66666777788898888778888888888775 55788889998999999999999999999999999999988877


Q ss_pred             HHHHHHHHhh
Q 012315          270 GTVWFTVWLS  279 (466)
Q Consensus       270 ~~~~~~~~~~  279 (466)
                      .++..+....
T Consensus       369 ~~~~~~~~~~  378 (394)
T PRK03699        369 YAVVFVMCIL  378 (394)
T ss_pred             HHHHHHHHHH
Confidence            7766554433

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.53  E-value=1.2e-11  Score=112.66  Aligned_cols=210  Identities=16%  Similarity=0.189  Sum_probs=145.7

Q ss_pred             hhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 012315          122 NMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR  201 (466)
Q Consensus       122 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  201 (466)
                      ..+|..-.+-+++|++..|++.+.........+..++.|.++||+|||+.-+...++.+++++.. ..+  +++.++++|
T Consensus        52 LQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~~--~~~~L~~GR  128 (354)
T PF05631_consen   52 LQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HSS--NYPVLLLGR  128 (354)
T ss_pred             hhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hcc--ccHHHHHHH
Confidence            34444444556899999999999999999999999999999999999999999999999888644 345  899999999


Q ss_pred             HHHHhhhccchhhHHHHHhccc-----CCCchhHHHHHHH-HHHHhHHHHHhhhHHHhhcccCc--hHHHHHHhHHHHHH
Q 012315          202 VFMGIGEGVAMPAMNNILSKWV-----PVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHRFGW--PSVFYSFGSLGTVW  273 (466)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~-----~~~~r~~~~~~~~-~~~~~g~~ig~~~~~~l~~~~gw--~~~~~~~~~~~~~~  273 (466)
                      ++.|++....+++-.+++..-.     |++..+..++... ..+++-.+++..++-++.+..|.  ..+|.....+.++.
T Consensus       129 vlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~  208 (354)
T PF05631_consen  129 VLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVA  208 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            9999999999888877754332     2222333333333 23344455666666677776554  78888877777776


Q ss_pred             HHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHH-HHHHH
Q 012315          274 FTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL-TWMPT  346 (466)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  346 (466)
                      .+++....+|+..+..+..+..+.            .+..++.+.+||+++.+.+...+.-...+.+. .|.|.
T Consensus       209 ~~~I~~~W~ENyg~~~~~~~~~~~------------~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPa  270 (354)
T PF05631_consen  209 AVLILKTWPENYGDTSSSSSLSGS------------FREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPA  270 (354)
T ss_pred             HHHHHhcccccCCCcccccchHHH------------HHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeece
Confidence            666655555554332211111111            01245678889999998888877776665543 44444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.52  E-value=8e-13  Score=127.59  Aligned_cols=152  Identities=15%  Similarity=0.128  Sum_probs=124.9

Q ss_pred             hHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 012315          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (466)
Q Consensus       123 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (466)
                      ....+|.+.++.|.+..+.|++.+...++..+++++.|++.||+|+|+++..+..+..++.+...  .  . .......+
T Consensus       219 ~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~--~-~~~~~~~~  293 (381)
T PRK03633        219 LYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S--Q-AAMAPALF  293 (381)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h--h-HHHHHHHH
Confidence            33456777777899999999999999999999999999999999999999888888777665442  2  2 22334566


Q ss_pred             HHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhh
Q 012315          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS  279 (466)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  279 (466)
                      +.|++.....+...+++.|..|+++++...+.++...++|..+||.++|++.+++||++.|.+.+.+.++..+..++
T Consensus       294 l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        294 ILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence            77777677788999999999988888888888889999999999999999999999999999888877766554443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.52  E-value=2e-12  Score=124.97  Aligned_cols=325  Identities=17%  Similarity=0.131  Sum_probs=201.4

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChh-hHHHHHHHH----HHHHHHHHhhhhhhhcccCcchHHHHHH
Q 012315          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPA-TVGLIQSSF----FWGYLLTQIAGGIWADTVGGKAVLGFGV  176 (466)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~g~~~~~~----~~~~~~~~~~~g~l~dr~g~r~~~~~~~  176 (466)
                      .+......++-.+..++.........+.....++.+.. ..+......    .+...+.++..|.++||+|||..+....
T Consensus        20 ~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~   99 (463)
T KOG2816|consen   20 MRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPL   99 (463)
T ss_pred             hhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHH
Confidence            34445555555566666555555556665555543322 223333333    6788889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhchhHHHHHHHHHHhh--hccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhh
Q 012315          177 VWWSIATALTPVAAKLGLPFLLVVRVFMGIG--EGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI  254 (466)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~--~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~  254 (466)
                      ....+..+...+..   +|.++    +.|+.  .+.......++++|....++|....|+.+.....+..++|.+++.+.
T Consensus       100 ~~~~l~~~~~~~~~---~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~  172 (463)
T KOG2816|consen  100 FGTILPALCLLFQG---YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV  172 (463)
T ss_pred             HHHHHhHHHHHHHH---HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            88888887777664   33333    44432  23466788999999999999999999999999999999999999999


Q ss_pred             cccCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHH-hhcccCCCCCCCcchhhhhcChhHHHHHHHHHHH
Q 012315          255 HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLI-VSSCASKEPVKTIPWGLILSKPPVWALIVSHFCH  333 (466)
Q Consensus       255 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (466)
                      ...|.-.+|.+..+..++..+..+...||+..+++.......+.. .+.......+........-.+|..+.+.+..++.
T Consensus       173 ~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~  252 (463)
T KOG2816|consen  173 KFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLS  252 (463)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHH
Confidence            999999999999998888888887877776554433210000000 0000000000000000000111111111111111


Q ss_pred             HH----------------------------------HHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHHhcCCchH
Q 012315          334 NW----------------------------------GTFILLTWMPTYYNQ-----IMQSIGFLGPAFFLTQLSHVDSPA  374 (466)
Q Consensus       334 ~~----------------------------------~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~  374 (466)
                      ..                                  ...........++..     .....++..-.+......+....|
T Consensus       253 ~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w  332 (463)
T KOG2816|consen  253 SLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETW  332 (463)
T ss_pred             HHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccch
Confidence            11                                  111111111112222     555566666666666666666667


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhc-ccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012315          375 MAVLCMACSQGTDAFSQSGLYSNHQ-DIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH  434 (466)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  434 (466)
                      ..+.......+... ..+...+... ...++++|+++++...+..+.+.++|.+.+.+...
T Consensus       333 ~~~~~~v~~~~~~~-~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~  392 (463)
T KOG2816|consen  333 MMFAAGVVVALAGI-VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL  392 (463)
T ss_pred             hhhHHHHHHHhhcc-hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence            66665555554433 3444444444 45568999999999999999999999999998654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.51  E-value=1.4e-13  Score=133.24  Aligned_cols=164  Identities=13%  Similarity=0.134  Sum_probs=124.6

Q ss_pred             HHHHHHHHhhhhhhhhHHhHhhhh-hccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHH--H
Q 012315          108 LCFSAFLLCNMDRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT--A  184 (466)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~--~  184 (466)
                      ......+.............|.+. +++|.+..+.+.+.....++..++.++.|+++||+|||+.+..+..+..+..  +
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  302 (394)
T TIGR00883       223 LGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPL  302 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence            333344444444555556666654 7789999999999999999999999999999999999998776555444333  2


Q ss_pred             HHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHH-HHHHHHhHHHHHhhhHHHhhcccC-chHH
Q 012315          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLAL-VYSGMYLGSVTGLAFSPFLIHRFG-WPSV  262 (466)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~ig~~~~~~l~~~~g-w~~~  262 (466)
                      ...+....+.+.+++..++.|++.+...+...+++.|.+|+++|++++++ ++....+|..++|.++|++.++.| |+..
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~  382 (394)
T TIGR00883       303 LMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAI  382 (394)
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhH
Confidence            22232212566677778888998888889999999999999999999998 456677899999999999999988 8887


Q ss_pred             HHHHhHHHH
Q 012315          263 FYSFGSLGT  271 (466)
Q Consensus       263 ~~~~~~~~~  271 (466)
                      ++...+..+
T Consensus       383 ~~~~~~~~l  391 (394)
T TIGR00883       383 GYYLAALAL  391 (394)
T ss_pred             HHHHHHHHH
Confidence            776554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.51  E-value=1.5e-13  Score=135.59  Aligned_cols=161  Identities=14%  Similarity=0.159  Sum_probs=128.8

Q ss_pred             HHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhccc--CcchHHHH--HHHHHHHHHHHHHH
Q 012315          113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAVLGF--GVVWWSIATALTPV  188 (466)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~--~~~~~~~~~~~~~~  188 (466)
                      .++...........+|.+.+++|.+..+.+++.++..++.++++++.|++.||.  ++|+...+  +.++.+++.+++.+
T Consensus       250 ~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~  329 (455)
T TIGR00892       250 NVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL  329 (455)
T ss_pred             HHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444566777778899999999999999999999999999999984  34443333  33444455555566


Q ss_pred             HhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhccc-CchHHHHHHh
Q 012315          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GWPSVFYSFG  267 (466)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-gw~~~~~~~~  267 (466)
                      .+  +++.+++.+++.|++.+...+...+++.|.+|++++++.+|+++...++|..+||.++|++.+.. +|+..|++.+
T Consensus       330 ~~--~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~  407 (455)
T TIGR00892       330 AG--DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASG  407 (455)
T ss_pred             hc--hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhh
Confidence            66  88888889999999999989999999999999999999999999999999999999999999877 4999999888


Q ss_pred             HHHHHHHH
Q 012315          268 SLGTVWFT  275 (466)
Q Consensus       268 ~~~~~~~~  275 (466)
                      ++.++..+
T Consensus       408 ~~~li~~~  415 (455)
T TIGR00892       408 SIVVSAGL  415 (455)
T ss_pred             HHHHHHHH
Confidence            77665544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.50  E-value=3.6e-13  Score=132.94  Aligned_cols=172  Identities=12%  Similarity=0.040  Sum_probs=116.4

Q ss_pred             HHHHHHHhhhhhhhhHHhHhhhh-hccCCChhhHHHHHHHHHHHHHHHHhhhhhhhccc--CcchHH-HHHHHHHHHHHH
Q 012315          109 CFSAFLLCNMDRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAVL-GFGVVWWSIATA  184 (466)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~-~~~~~~~~~~~~  184 (466)
                      ..+..++.....+.....+|.+. ++.|++..+.+++..++.++..++.++.|+++||+  +||+.. .....+..++.+
T Consensus       258 ~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~  337 (452)
T PRK11273        258 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI  337 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHH
Confidence            33333333333444555677755 45799999999999999999999999999999999  555432 222333333333


Q ss_pred             HHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHH-HHhhhHHHhhcccCchHHH
Q 012315          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSV-TGLAFSPFLIHRFGWPSVF  263 (466)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-ig~~~~~~l~~~~gw~~~~  263 (466)
                      +..+....+.+..++..++.|.+..........+..|.+|+++||+++|+.+....+|+. ++|.+.|++.+.+||+..|
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f  417 (452)
T PRK11273        338 VYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF  417 (452)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHH
Confidence            333322113444444455555543332333445678999999999999999988888865 4899999999999999999


Q ss_pred             HHHhHHHHHHHHHHhhh
Q 012315          264 YSFGSLGTVWFTVWLSK  280 (466)
Q Consensus       264 ~~~~~~~~~~~~~~~~~  280 (466)
                      ++.++.+++.++....+
T Consensus       418 ~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        418 MVMIGGSILAVILLIVV  434 (452)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            98888777665555444

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.50  E-value=4.4e-13  Score=130.48  Aligned_cols=141  Identities=16%  Similarity=0.185  Sum_probs=115.6

Q ss_pred             hHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHH-HHHHHhhhchhHHHHH
Q 012315          123 MSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA-LTPVAAKLGLPFLLVV  200 (466)
Q Consensus       123 ~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~  200 (466)
                      .....|. +.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++..+..+ +....+  +.+.+.+.
T Consensus       257 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  334 (405)
T TIGR00891       257 IQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGA--NVAVLGLG  334 (405)
T ss_pred             hhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCC--chHHHHHH
Confidence            3334454 5567899999999999999999999999999999999999999888776543333 222333  56666666


Q ss_pred             HHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC-chHHHHH
Q 012315          201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYS  265 (466)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-w~~~~~~  265 (466)
                      .++.|++.+...+....++.|.+|+++|++++|+.+....+|..++|++.|++.+..| |+..+..
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       335 LFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            6777777777778888999999999999999999999999999999999999999988 8776654

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.50  E-value=2.4e-15  Score=148.87  Aligned_cols=241  Identities=16%  Similarity=0.183  Sum_probs=3.0

Q ss_pred             HHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 012315          110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA  189 (466)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  189 (466)
                      ++..++...........+..+.++|+++.++.|++.+.+-++..+..++..++.+|..|-|++-+|.++++++.+++++-
T Consensus         9 ~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lP   88 (539)
T PF03137_consen    9 CLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALP   88 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhcc
Confidence            33344445556666777889999999999999999999999999999999999999888889999999999999877532


Q ss_pred             hh------------------------------------------------hchhHHHHHHHHHHhhhccchhhHHHHHhc
Q 012315          190 AK------------------------------------------------LGLPFLLVVRVFMGIGEGVAMPAMNNILSK  221 (466)
Q Consensus       190 ~~------------------------------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~  221 (466)
                      +-                                                .-++.++++.++.|+|....++...+|+-|
T Consensus        89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD  168 (539)
T PF03137_consen   89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD  168 (539)
T ss_dssp             ---------------------------------------------------------------SSS--------------
T ss_pred             HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence            10                                                003567788999999999999999999999


Q ss_pred             ccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc---------------------cC-chHHHHHHhHHHHHHHHHHhh
Q 012315          222 WVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR---------------------FG-WPSVFYSFGSLGTVWFTVWLS  279 (466)
Q Consensus       222 ~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~---------------------~g-w~~~~~~~~~~~~~~~~~~~~  279 (466)
                      .+++++-+..+|++.....+|.++|-++++.+.+.                     .| |..-|++.+++.++..+..+.
T Consensus       169 nv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~  248 (539)
T PF03137_consen  169 NVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF  248 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999876541                     13 777788888888777777766


Q ss_pred             hcccCCCCCCCCCh---HHHHHH---hhcccCC---------CCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 012315          280 KAHSSPAEDPQLRP---AEKKLI---VSSCASK---------EPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM  344 (466)
Q Consensus       280 ~~~~~~~~~~~~~~---~~~~~~---~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (466)
                      +.++-|...+..++   ++.+..   .++.+++         .++-....+++++||.+....+...+......++.+++
T Consensus       249 FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~  328 (539)
T PF03137_consen  249 FPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFL  328 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65555544111100   000000   0000000         11122356778999999999999999999999999999


Q ss_pred             HHHHHH
Q 012315          345 PTYYNQ  350 (466)
Q Consensus       345 ~~~l~~  350 (466)
                      |.|++.
T Consensus       329 pKylE~  334 (539)
T PF03137_consen  329 PKYLES  334 (539)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            999998

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.49  E-value=2.6e-12  Score=119.80  Aligned_cols=177  Identities=14%  Similarity=0.151  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHH
Q 012315          103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA  182 (466)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  182 (466)
                      ..+........+........+..+-|.+++..|++.+.++++..++.++..+++++.|++.|| +.|+.+.....+.++.
T Consensus       211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~  289 (394)
T COG2814         211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALA  289 (394)
T ss_pred             chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHH
Confidence            334444444444444555567777888999999999999999999999999999999999999 9999999888888888


Q ss_pred             HHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHH
Q 012315          183 TALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV  262 (466)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~  262 (466)
                      .+...+... +.+..++.-++.|+..+.........+++.. ++.++.+.+++....++|..+|..++|.+.+++|+...
T Consensus       290 ~l~l~~~~~-~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~  367 (394)
T COG2814         290 LLALTFTGA-SPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAAT  367 (394)
T ss_pred             HHHHHHhcc-hHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence            777666652 5566666677788877776666677777743 58999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHhhhcc
Q 012315          263 FYSFGSLGTVWFTVWLSKAH  282 (466)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~  282 (466)
                      .++.+++.++..++.+...+
T Consensus       368 ~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         368 GWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999888887776655433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.46  E-value=5.1e-12  Score=122.98  Aligned_cols=160  Identities=16%  Similarity=0.165  Sum_probs=128.8

Q ss_pred             hHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhccc-----CcchHHHHHHHHHHHHHHHHHHHhh--hchh
Q 012315          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-----GGKAVLGFGVVWWSIATALTPVAAK--LGLP  195 (466)
Q Consensus       123 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~  195 (466)
                      .....|.+.+++|+++.+...+.++..+...+ -++.|.++|-+     .||+.++++.++..++.+.++..+.  .+..
T Consensus         9 ~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~   87 (433)
T PF03092_consen    9 RLAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA   87 (433)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence            34557789999999999999999999988885 79999999986     3666777888887766666665442  1455


Q ss_pred             HHHHHHHHHHhhhccchhhHHHHHhcccC--CCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHH
Q 012315          196 FLLVVRVFMGIGEGVAMPAMNNILSKWVP--VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW  273 (466)
Q Consensus       196 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~  273 (466)
                      ...+..++..+|........-+++.|...  ++.+|...+.......+|.+++..++|.+.+..+++..|.+.+++.++.
T Consensus        88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~  167 (433)
T PF03092_consen   88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLM  167 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHH
Confidence            66666778888999999999999988874  3347888888889999999999999999999999999999988887777


Q ss_pred             HHHHhhhccc
Q 012315          274 FTVWLSKAHS  283 (466)
Q Consensus       274 ~~~~~~~~~~  283 (466)
                      .+..++..+|
T Consensus       168 ~~~~~~~~~e  177 (433)
T PF03092_consen  168 LIVALFLLEE  177 (433)
T ss_pred             HHHHHHhhhh
Confidence            6666666665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.46  E-value=1.9e-12  Score=127.09  Aligned_cols=140  Identities=15%  Similarity=0.153  Sum_probs=107.7

Q ss_pred             hHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 012315          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (466)
Q Consensus       123 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (466)
                      +...+|.+.++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+..+.....+  +.....+..+
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  327 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIP--QDNYLLLGAC  327 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc--cccHHHHHHH
Confidence            44456777777899999999999999999999999999999999999999988877766655544433  2111222223


Q ss_pred             HHHh--hhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHH
Q 012315          203 FMGI--GEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY  264 (466)
Q Consensus       203 l~G~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~  264 (466)
                      +.|+  +.....+..+.++.|.+|+++||+++|+......+|..++|.+.+++.+.+|+....+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~  391 (426)
T PRK12307        328 LFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALT  391 (426)
T ss_pred             HHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHH
Confidence            3333  2223345667788999999999999999999999999999999999999988765433

>TIGR00897 2A0118 polyol permease family

Probab=99.46  E-value=5.3e-12  Score=122.75  Aligned_cols=166  Identities=17%  Similarity=0.217  Sum_probs=125.9

Q ss_pred             HHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHH-HHHHHHHHHHHHHHHHh
Q 012315          112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG-FGVVWWSIATALTPVAA  190 (466)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~~~~  190 (466)
                      ..++............|.+.+++|.+..+.+++.+...++..++.+..|+++||+|||+.+. .+.+..+++.+.+.+.+
T Consensus       230 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~  309 (402)
T TIGR00897       230 VRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIP  309 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455566778888889999999999999999999999999999999999988764 33344444333333221


Q ss_pred             ---hhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHh
Q 012315          191 ---KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFG  267 (466)
Q Consensus       191 ---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~  267 (466)
                         ..+.+.+++..++.|++.+...+ ....+.+..| ++|++++|+.+....+|..++|.+++.+.+.+||+..+++.+
T Consensus       310 ~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a  387 (402)
T TIGR00897       310 QHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFA  387 (402)
T ss_pred             HccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence               11556667778888888776544 4556677654 689999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHhh
Q 012315          268 SLGTVWFTVWLS  279 (466)
Q Consensus       268 ~~~~~~~~~~~~  279 (466)
                      ++.++..++..+
T Consensus       388 ~~~~i~~~~~~~  399 (402)
T TIGR00897       388 ALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHH
Confidence            887776655544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.45  E-value=4e-12  Score=122.71  Aligned_cols=147  Identities=16%  Similarity=0.084  Sum_probs=124.5

Q ss_pred             hHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 012315          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (466)
Q Consensus       123 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (466)
                      .....|.+.++.|.+..+.|.+.++..++..+..++.|++.||+|+|+.+..+.++.+++.++..+.+  +.+.+++..+
T Consensus       224 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  301 (382)
T PRK11128        224 YYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT--ALPWLIVIQI  301 (382)
T ss_pred             HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHH
Confidence            33445566577999999999999999999999999999999999999999999999998888888887  8888889999


Q ss_pred             HHHhhhccchhhHHHHHhcccCCCchhHHHHHHH-HHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHH
Q 012315          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW  273 (466)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~  273 (466)
                      +.|++.+...+....++.+. +++++++..++++ ....+|..+||.++|.+.+.+|+ ..|+..+++.++.
T Consensus       302 l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        302 LHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence            99999998888889988887 5667789999876 55678889999999999999987 4666666665543

>PRK09952 shikimate transporter; Provisional

Probab=99.45  E-value=4e-12  Score=124.91  Aligned_cols=160  Identities=13%  Similarity=0.006  Sum_probs=116.6

Q ss_pred             hhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHH--hhhchhH
Q 012315          120 RVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA--AKLGLPF  196 (466)
Q Consensus       120 ~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~  196 (466)
                      .+......|. +.+++|.+......+..+..+...++.++.|+++||+|||+.+..+.++..++.+.+...  ...+.+.
T Consensus       266 ~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (438)
T PRK09952        266 MYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWI  345 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence            3334444554 556789888876666667777788889999999999999999988877666554433322  1112344


Q ss_pred             HHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHH-HHHHhHHHHHhhhHHHhhccc--CchHHHHHHhHHHHHH
Q 012315          197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHRF--GWPSVFYSFGSLGTVW  273 (466)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~ig~~~~~~l~~~~--gw~~~~~~~~~~~~~~  273 (466)
                      +++..++.|++.+...+...+++.|.+|.+.|+.+.++.+ .+..+|+.++|.+.+++.+..  +|+..+...+++.++.
T Consensus       346 ~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~  425 (438)
T PRK09952        346 VFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLIS  425 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            4455666788888778888999999999999999999854 445589999999999998754  4888888777776666


Q ss_pred             HHHHhh
Q 012315          274 FTVWLS  279 (466)
Q Consensus       274 ~~~~~~  279 (466)
                      .+..+.
T Consensus       426 ~v~~~~  431 (438)
T PRK09952        426 AMTALL  431 (438)
T ss_pred             HHHHHH
Confidence            555443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.43  E-value=1e-11  Score=121.52  Aligned_cols=176  Identities=13%  Similarity=0.069  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHh-HhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcc--hHHHHHHHHH
Q 012315          103 WFIVVLCFSAFLLCNMDRVNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK--AVLGFGVVWW  179 (466)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~  179 (466)
                      .+.+....+++++..-..+.+... ..+..+++|++..+...+..+..+..+++++++|++.||+|.|  +++.++++++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW  359 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            344455555555444333333333 4445668999999999999999999999999999999999999  8888888777


Q ss_pred             HHHHHHHHH--------HhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHH
Q 012315          180 SIATALTPV--------AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSP  251 (466)
Q Consensus       180 ~~~~~~~~~--------~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~  251 (466)
                      .+..+...+        .+  +.+.+++..++.|+..|..++...++.++..|+++.+..+|++.......+.+||++.+
T Consensus       360 ~~i~~~g~~G~~~~~~g~~--~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g  437 (477)
T PF11700_consen  360 IIIPLYGLFGFWPSFFGLK--SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFG  437 (477)
T ss_pred             HHHHHHHHHHhhhcccCcc--cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            555544444        34  67889999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccC-chHHHHHHhHHHHHHHHHHhhh
Q 012315          252 FLIHRFG-WPSVFYSFGSLGTVWFTVWLSK  280 (466)
Q Consensus       252 ~l~~~~g-w~~~~~~~~~~~~~~~~~~~~~  280 (466)
                      .+.+..| -|..+....++.++.+++..+.
T Consensus       438 ~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  438 LITDATGSQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence            9999887 8888887777777766655444

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.43  E-value=7.6e-12  Score=123.68  Aligned_cols=155  Identities=15%  Similarity=0.164  Sum_probs=138.2

Q ss_pred             hhHHhHhhhh-hccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 012315          122 NMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVV  200 (466)
Q Consensus       122 ~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  200 (466)
                      .+...+|.+. +++|.++...|++.++..+|.+++++..+++.+|+++++.+..+.++.+++.+..++.+  +.+...+.
T Consensus       236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~--~~~~~~~~  313 (524)
T PF05977_consen  236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP--SFWLALIA  313 (524)
T ss_pred             HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch--HHHHHHHH
Confidence            3344577754 56899999999999999999999999999999999999999999999999999999998  88988889


Q ss_pred             HHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHh
Q 012315          201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL  278 (466)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  278 (466)
                      .++.|++.........+.+.+..|++.||+.++++++....+..+|.++.|.+.+.+|.+.++.+.++..++..++..
T Consensus       314 l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  314 LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988899999999999999999999999999999999999999999999999998877766555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15075 citrate-proton symporter; Provisional

Probab=99.41  E-value=5.5e-12  Score=123.87  Aligned_cols=146  Identities=18%  Similarity=0.152  Sum_probs=105.6

Q ss_pred             HhhhhhhhhHHhHhhhhh-ccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHH-HH-HHHhh
Q 012315          115 LCNMDRVNMSIAILPMSA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA-LT-PVAAK  191 (466)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~-~~~~~  191 (466)
                      .............|.+.+ .+|++..+.++....+.++..++.++.|+++||+|||+.+..+..+..+..+ .. .....
T Consensus       249 ~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  328 (434)
T PRK15075        249 MTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAA  328 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            333444455566777554 5899999999999999999999999999999999999988876554433222 11 11121


Q ss_pred             hchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHH-HHHhHHHHHhhhHHHhhcccCch
Q 012315          192 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYS-GMYLGSVTGLAFSPFLIHRFGWP  260 (466)
Q Consensus       192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~ig~~~~~~l~~~~gw~  260 (466)
                      .++..+.+..++.|++.+...+....++.|.+|+++|+.++++.+. +..+++.++|.+.+++.+..|++
T Consensus       329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        329 PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            1343444445566677776667777889999999999999998644 44456788999999999988864

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.41  E-value=3.1e-11  Score=120.08  Aligned_cols=153  Identities=14%  Similarity=0.147  Sum_probs=119.8

Q ss_pred             HhhhhhccCCChhhHHHHHH-HHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHH---HHHhhhchhHHHHHHH
Q 012315          127 ILPMSAEFNWNPATVGLIQS-SFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT---PVAAKLGLPFLLVVRV  202 (466)
Q Consensus       127 ~~~~~~~~~~s~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~  202 (466)
                      .|.+.+++|++..+.+++.. ...++.+++.+++|+++||+|+|+.+.++.++.+++.+++   +... .+.+.+.+..+
T Consensus       246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~-~~~~~l~~~~~  324 (491)
T PRK11010        246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITD-KNLYSMGAAVF  324 (491)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence            44556779999999999984 6678999999999999999999998877666555544332   2221 14444455566


Q ss_pred             HHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhhh
Q 012315          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSK  280 (466)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  280 (466)
                      +..++.+...+...++..+..+++.+++..++.+...++|..+++.+.|++.+.+||+..|.+.++++++..+.....
T Consensus       325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            655555656677788889999999999999999999999999999999999999999999998888887776665554

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.40  E-value=9.8e-12  Score=119.53  Aligned_cols=190  Identities=13%  Similarity=0.066  Sum_probs=144.2

Q ss_pred             CCCCchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHH
Q 012315           97 EEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGV  176 (466)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~  176 (466)
                      +.+..++.....+.+......-+.+....+...+.++-|++..+.-++.....+...+..+++.++.||+|||+.++++.
T Consensus       263 ~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~  342 (485)
T KOG0569|consen  263 KNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISL  342 (485)
T ss_pred             cCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            34444555555555555555555566666777888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh--ch--h---HHHHHHHHHHhhhcc-chhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhh
Q 012315          177 VWWSIATALTPVAAKL--GL--P---FLLVVRVFMGIGEGV-AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLA  248 (466)
Q Consensus       177 ~~~~~~~~~~~~~~~~--~~--~---~l~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~  248 (466)
                      .++.+..+++......  ..  |   ..+++.++..++.+. ..|..+-+.+|.+|++.|..++++......+...+-..
T Consensus       343 ~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~  422 (485)
T KOG0569|consen  343 SLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGF  422 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHH
Confidence            9998888766544210  11  1   123333333333332 36788999999999999999999999999988888887


Q ss_pred             hHHHhhcccCchHHHHHHhHHHHHHHHHHhhhcccCCCC
Q 012315          249 FSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE  287 (466)
Q Consensus       249 ~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (466)
                      ....+.+.+|- ..|++..+.+++..+..++..||++.+
T Consensus       423 ~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr  460 (485)
T KOG0569|consen  423 AFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR  460 (485)
T ss_pred             HHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence            77777777776 678888888888888888888887643

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.40  E-value=1.1e-11  Score=123.70  Aligned_cols=166  Identities=13%  Similarity=0.040  Sum_probs=124.9

Q ss_pred             hhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhch-h-HH
Q 012315          120 RVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGL-P-FL  197 (466)
Q Consensus       120 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l  197 (466)
                      .+......|.+.++.|.+....++......+...++.++.|+++||+|||++++.+.++.+++.++++.....+. + ..
T Consensus       287 ~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~  366 (479)
T PRK10077        287 INVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA  366 (479)
T ss_pred             hhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence            334445668888889998877788878888899999999999999999999999999999988877765421121 1 22


Q ss_pred             HHHHHHHHhhhcc-chhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHh------hcccCchHHHHHHhHHH
Q 012315          198 LVVRVFMGIGEGV-AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL------IHRFGWPSVFYSFGSLG  270 (466)
Q Consensus       198 ~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l------~~~~gw~~~~~~~~~~~  270 (466)
                      ..+.++.+++.+. ..+....++.|.+|+++|++++|+.+....+|.++++.+.+.+      .+.++|+..|++.++++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  446 (479)
T PRK10077        367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG  446 (479)
T ss_pred             HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHH
Confidence            3334444444443 3367789999999999999999999999999999886665543      45788999999888877


Q ss_pred             HHHHHHHhhhcccCC
Q 012315          271 TVWFTVWLSKAHSSP  285 (466)
Q Consensus       271 ~~~~~~~~~~~~~~~  285 (466)
                      ++.+++.+++.||++
T Consensus       447 ~~~~~~~~~~~~e~~  461 (479)
T PRK10077        447 VLAALFMWKFVPETK  461 (479)
T ss_pred             HHHHHHHHhccccCC
Confidence            777666665555543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.38  E-value=1e-11  Score=120.52  Aligned_cols=142  Identities=8%  Similarity=0.064  Sum_probs=122.2

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhh
Q 012315          135 NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPA  214 (466)
Q Consensus       135 ~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~  214 (466)
                      +.+....|.+.++..+...++.+..|++.||+|+|+.+.++.++.++...+..+.+  +.+.+++..++.|++.......
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~  327 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFAT--TALEVVILKMLHAFEVPFLLVG  327 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHH
Confidence            55667789999999999999999999999999999999999998888888777777  8888888899999988776667


Q ss_pred             HHHHHhcccCCCchhHHHHH-HHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHh
Q 012315          215 MNNILSKWVPVAERSRSLAL-VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL  278 (466)
Q Consensus       215 ~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  278 (466)
                      ...+..+..+++.++...+. ++....+|..+++.++|++.+.+||+.+|.+.+++.++..+...
T Consensus       328 ~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       328 CFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            77788888888888877766 67889999999999999999999999999998888777665443

>PRK10504 putative transporter; Provisional

Probab=99.38  E-value=1.1e-11  Score=123.16  Aligned_cols=145  Identities=17%  Similarity=0.132  Sum_probs=118.1

Q ss_pred             HhhhhhhhhHHhHhhhhh-ccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhh-h
Q 012315          115 LCNMDRVNMSIAILPMSA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK-L  192 (466)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~  192 (466)
                      +............|.+.+ .+|.++.+.+++.....++..++.++.|++.||+|+|+++..+.++.+++..+..+... .
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (471)
T PRK10504        272 AGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLG  351 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccc
Confidence            333344455556777655 58999999999999999999999999999999999999999998888877766655431 1


Q ss_pred             chhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCc
Q 012315          193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (466)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw  259 (466)
                      +.+.+.+..++.|++.+...+....++.+.+|+++++.+.++.+....+|..+|+.+++.+.+..|+
T Consensus       352 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        352 WYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3444455677788888888888999999999999999999999999999999999999998876665

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.38  E-value=1.8e-12  Score=129.74  Aligned_cols=164  Identities=10%  Similarity=0.001  Sum_probs=110.0

Q ss_pred             hhhHHhHhhhhhccCCChhhHHH------------HHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHH
Q 012315          121 VNMSIAILPMSAEFNWNPATVGL------------IQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV  188 (466)
Q Consensus       121 ~~~~~~~~~~~~~~~~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  188 (466)
                      +......|.+.++.|.+..+.+.            ...+..++.+++.++.++++||+|||++++++..+.+++.++..+
T Consensus       305 y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~  384 (502)
T TIGR00887       305 YGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGF  384 (502)
T ss_pred             HccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            33444577777788876542211            233445566778899999999999999999888887777766654


Q ss_pred             Hhhh--chhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc----------
Q 012315          189 AAKL--GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR----------  256 (466)
Q Consensus       189 ~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~----------  256 (466)
                      ....  +...+...-+...++.....+....+.+|.+|.+.|++++|+.+....+|.+++|.+.+++.+.          
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  464 (502)
T TIGR00887       385 AYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTG  464 (502)
T ss_pred             HHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccc
Confidence            3210  1111111111122222234456677889999999999999999999999999999999998873          


Q ss_pred             cCchHHHHHHhHHHHHHHHHHhhhcccCC
Q 012315          257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSP  285 (466)
Q Consensus       257 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (466)
                      .++...|++.+++.++..+.. ++.||++
T Consensus       465 ~~~~~~~~i~~~~~~~~~i~~-~~lpEt~  492 (502)
T TIGR00887       465 IWMGHVLEIFALFMFLGILFT-LLIPETK  492 (502)
T ss_pred             ccchHHHHHHHHHHHHHHHHh-eEeccCC
Confidence            345667787777776665544 4556543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00895 2A0115 benzoate transport

Probab=99.38  E-value=1.7e-11  Score=119.02  Aligned_cols=143  Identities=13%  Similarity=0.164  Sum_probs=114.1

Q ss_pred             HHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHH
Q 012315          109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV  188 (466)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  188 (466)
                      ..+..++............|.+.+++|.+..+.++..+...++..++.++.|++.||+|+|+.+....+......++...
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (398)
T TIGR00895       255 LWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGST  334 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444445556677888899999999999999999999999999999999999995544444333333333332


Q ss_pred             HhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHh
Q 012315          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL  253 (466)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l  253 (466)
                      ..  +.+.+++..++.|++.+...+...+++.|.+|+++|++++|+.+....+|..+||.++|++
T Consensus       335 ~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       335 LF--SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             hh--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            44  6777778889999999999999999999999999999999999999999999999999876

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.37  E-value=5.8e-12  Score=123.90  Aligned_cols=164  Identities=12%  Similarity=0.025  Sum_probs=111.9

Q ss_pred             hhhHHhHhhhh-hccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHH---HHHHHHHHHhhhchhH
Q 012315          121 VNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS---IATALTPVAAKLGLPF  196 (466)
Q Consensus       121 ~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~  196 (466)
                      +......|.+. +..|.+..+.++...+..++..++.++.|+++||+++++....+..+..   ++.+.....+..+.+.
T Consensus       268 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (438)
T TIGR00712       268 YGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLV  347 (438)
T ss_pred             HHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence            34445566654 4579999999999999999999999999999999975442223332221   1222222221113343


Q ss_pred             HHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhH-HHHHhhhHHHhhcccCchHHHHHHhHHHHHHHH
Q 012315          197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLG-SVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFT  275 (466)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~  275 (466)
                      .....++.|++.............|.+|+++|++++|+.+....+| ..++|.+.|.+.+..||...|++.+++.++..+
T Consensus       348 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~  427 (438)
T TIGR00712       348 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI  427 (438)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            3344445555433222233456779999999999999999888876 578999999999999999999988877777666


Q ss_pred             HHhhhcccC
Q 012315          276 VWLSKAHSS  284 (466)
Q Consensus       276 ~~~~~~~~~  284 (466)
                      ..+.+.+|+
T Consensus       428 ~~~~~~~~~  436 (438)
T TIGR00712       428 LLIVVMIGE  436 (438)
T ss_pred             HHHHHHhhc
Confidence            666665554

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.37  E-value=3.1e-12  Score=122.53  Aligned_cols=133  Identities=17%  Similarity=0.236  Sum_probs=118.7

Q ss_pred             HhHhhhhhc-cCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Q 012315          125 IAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVF  203 (466)
Q Consensus       125 ~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  203 (466)
                      ...|.+.++ +|.+..+.+++.+...++..++.++.+++.||++||+.+..+..+.+++..+..+.+. +.+.+++..++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  310 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP-NFPLFLVLWFA  310 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHH
Confidence            556776654 8999999999999999999999999999999999999999888888888877777762 37788888999


Q ss_pred             HHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC
Q 012315          204 MGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (466)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g  258 (466)
                      .|++.+...+...+++.|.+|+++|+++.|+.+....+|..++|.++|++.+.+|
T Consensus       311 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       311 IGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999988654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.36  E-value=6.5e-11  Score=114.62  Aligned_cols=147  Identities=12%  Similarity=0.032  Sum_probs=117.9

Q ss_pred             HhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHH-HHHHHHHHHHHhhhchhHHHHHHHHHH
Q 012315          127 ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW-WSIATALTPVAAKLGLPFLLVVRVFMG  205 (466)
Q Consensus       127 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~G  205 (466)
                      .|.+.+++|++..+.+++.....++..++.++.|++.||.+ |+.+..+.++ .....++....+  +.+.+.+..++.|
T Consensus       240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~G  316 (394)
T PRK10213        240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGS--DKIVATGVAIIWG  316 (394)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHH
Confidence            46777889999999999999999999999999999999965 4444444344 344344444555  6777788889999


Q ss_pred             hhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHH
Q 012315          206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW  277 (466)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~  277 (466)
                      ++.+...+...+++.+..| +++++..++.....++|..+|+.++|++.+..|++..+...+++.++..+..
T Consensus       317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~  387 (394)
T PRK10213        317 LTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALLV  387 (394)
T ss_pred             HHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHH
Confidence            9999888888989998886 6677888888889999999999999999999999988888776655544433

>TIGR01272 gluP glucose/galactose transporter

Probab=99.36  E-value=4.4e-11  Score=111.41  Aligned_cols=162  Identities=9%  Similarity=0.082  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHhHhhhhh---ccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHH
Q 012315          103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSA---EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (466)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (466)
                      ++.+.+..+..++............+.+.+   .+|+++.+.++..+.+..+..++.+..+++.||+|+|+++.++.++.
T Consensus       139 ~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~  218 (310)
T TIGR01272       139 FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLA  218 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            334444555555555445555555555443   36999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCc
Q 012315          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (466)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw  259 (466)
                      +++.++....+  +... ..+-++.|++.+..+|...+...+..| ++.+++.++. ....+|+.++|++.|.+.|..|.
T Consensus       219 ~~~~~l~~~~~--~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~-~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~  293 (310)
T TIGR01272       219 VLLSIGAALTH--GYVA-MWFVLALGLFNSIMFPTIFSLALNALG-RHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGI  293 (310)
T ss_pred             HHHHHHHHHcC--CHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccc
Confidence            87776665554  4332 335567899999999999999999886 4456677775 56679999999999999999999


Q ss_pred             hHHHHHHhHH
Q 012315          260 PSVFYSFGSL  269 (466)
Q Consensus       260 ~~~~~~~~~~  269 (466)
                      +.+|++..+.
T Consensus       294 ~~a~~v~~~~  303 (310)
T TIGR01272       294 QLAFALPVPC  303 (310)
T ss_pred             hHHHHHHHHH
Confidence            8888754433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10054 putative transporter; Provisional

Probab=99.36  E-value=2e-11  Score=118.19  Aligned_cols=152  Identities=12%  Similarity=0.099  Sum_probs=124.1

Q ss_pred             hccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccc
Q 012315          132 AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVA  211 (466)
Q Consensus       132 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~  211 (466)
                      ++.+.+....+++.....+.....+++.|++.||+++|+.+..+.++.+++.....+..+ +.+.+.+..++.|+|.+..
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~  315 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGN-SLLLWGMSAAVFTVGEIIY  315 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcch-HHHHHHHHHHHHHHHHHHH
Confidence            456777788899999888888888899999999999999999998888888877766421 6666777888999998888


Q ss_pred             hhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhhhcccCC
Q 012315          212 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP  285 (466)
Q Consensus       212 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (466)
                      .+...+.+.+..|++.|+++.+..+ ...+|..+||.++|.+.+++|....|++.+....+..++.....+++|
T Consensus       316 ~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (395)
T PRK10054        316 APGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARP  388 (395)
T ss_pred             HhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence            8888899999999999999998765 566899999999999999999998998877666666555554444443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.35  E-value=2.3e-11  Score=117.90  Aligned_cols=153  Identities=16%  Similarity=0.103  Sum_probs=115.7

Q ss_pred             hHHhHhhhhhccCCChhhHHHHHHHHHH-HHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHh----hhchhHH
Q 012315          123 MSIAILPMSAEFNWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA----KLGLPFL  197 (466)
Q Consensus       123 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~l  197 (466)
                      .....+.+.+|.|+++.++|++.....+ ...++.++.|++.||+|+|+.+..+.++.++..+......    ..+.+.+
T Consensus       227 ~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (390)
T TIGR02718       227 GFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVA  306 (390)
T ss_pred             HHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHH
Confidence            3334566666789999999999988764 6667789999999999999999887766533333222111    0133344


Q ss_pred             HHHHHHHHhhhccchhhHHHHHhcccCC-CchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHH
Q 012315          198 LVVRVFMGIGEGVAMPAMNNILSKWVPV-AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFT  275 (466)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~  275 (466)
                      +....+.+++.+...+...+.+.+..++ +++++.+++.+...++|..+||.++|++.+..|++..|++.+++.++..+
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       307 WSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            4445566677777777788887777766 88999999999999999999999999999999999999887776665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.33  E-value=6.2e-11  Score=116.38  Aligned_cols=159  Identities=11%  Similarity=0.021  Sum_probs=103.0

Q ss_pred             hhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHH-Hh-hhchhH
Q 012315          120 RVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV-AA-KLGLPF  196 (466)
Q Consensus       120 ~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~~-~~~~~~  196 (466)
                      .+.+...+|. +.+++|.+..+.++..++..++..+++++.|+++||+|||+.+.++.++.++..+.... .. ..+...
T Consensus       259 ~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (432)
T PRK10406        259 FYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYA  338 (432)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            3444555666 45678999999999999988888999999999999999999887766654443322211 11 102222


Q ss_pred             HHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHh-HHHHHhhhHHHhhcccC-chHHHHHHhHHHHHHH
Q 012315          197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWF  274 (466)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~ig~~~~~~l~~~~g-w~~~~~~~~~~~~~~~  274 (466)
                      .+....+.+++.+...+....+.+|++|++.|++++|+.+...++ ++...|.+.+.+ +..| |...+++.++..++..
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~  417 (432)
T PRK10406        339 AFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAF  417 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHH
Confidence            222222222333344456678899999999999999998766554 344577777755 4455 5555665555555554


Q ss_pred             HHHhh
Q 012315          275 TVWLS  279 (466)
Q Consensus       275 ~~~~~  279 (466)
                      +..++
T Consensus       418 ~~~~~  422 (432)
T PRK10406        418 LVSLM  422 (432)
T ss_pred             HHHHH
Confidence            44443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.33  E-value=4.9e-10  Score=99.03  Aligned_cols=178  Identities=15%  Similarity=0.094  Sum_probs=135.1

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHH
Q 012315          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI  181 (466)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  181 (466)
                      ||..+..........+ ..+.++.+-|.+++.+|+|.+|...+.+...+|..+ .++.|.+.|++|++.++.+|.+...+
T Consensus         1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~   78 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV   78 (250)
T ss_pred             ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            4666656555555544 567888899999999999999999999999999986 59999999999999999999999999


Q ss_pred             HHHHHHHHhh-----hchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc
Q 012315          182 ATALTPVAAK-----LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (466)
Q Consensus       182 ~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~  256 (466)
                      |..+..++-+     .++|.+.+..++.|.+.+....+......+.|| ++||++.|+.-...++++.+-..+...+.+.
T Consensus        79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            9988776532     256777777788888877777777777778997 6899999999999999988877777666554


Q ss_pred             cCchHHHHHHhHHHHHHHHHHhhhccc
Q 012315          257 FGWPSVFYSFGSLGTVWFTVWLSKAHS  283 (466)
Q Consensus       257 ~gw~~~~~~~~~~~~~~~~~~~~~~~~  283 (466)
                       +-...++..+....+..++...+.+.
T Consensus       158 -~~~~fll~la~~~~~v~l~~~~~vr~  183 (250)
T PF06813_consen  158 -DPSSFLLFLAVLPAVVCLVAMFFVRP  183 (250)
T ss_pred             -ChHHHHHHHHHHHHHHHHHHhhheec
Confidence             32333344444444433333333333

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.33  E-value=2.8e-11  Score=119.09  Aligned_cols=176  Identities=16%  Similarity=0.145  Sum_probs=154.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccC--cchHHHHHHHHHHH
Q 012315          104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG--GKAVLGFGVVWWSI  181 (466)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~  181 (466)
                      +.++...+...+..+...+....+|.+.++.+.+..+.+.+.++..+...++.++.|+++|+..  ++.+..+++++.++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl  377 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL  377 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence            4455666666667777778888899999999999999999999999999999999999999988  45566788888888


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC-ch
Q 012315          182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WP  260 (466)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-w~  260 (466)
                      +.+.+++.+  +++.++..-++.|++.|.........+.|..+.++-..+.|+...+.+++.++||+++|++.+..| |.
T Consensus       378 ~~~~~p~~~--~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~  455 (509)
T KOG2504|consen  378 ARLFLPFAT--TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD  455 (509)
T ss_pred             HHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence            888899999  999999999999999999888888899999999999999999999999999999999999999887 99


Q ss_pred             HHHHHHhHHHHHHHHHHhhhc
Q 012315          261 SVFYSFGSLGTVWFTVWLSKA  281 (466)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~  281 (466)
                      ..|+..++..++....+++..
T Consensus       456 ~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  456 HAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eehhhcChHHHHHHHHHHHhH
Confidence            999999888887766554443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.32  E-value=1e-11  Score=119.61  Aligned_cols=153  Identities=13%  Similarity=0.093  Sum_probs=108.4

Q ss_pred             HHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCc-chHHH-HHH-HHHHHHHHHH
Q 012315          111 SAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG-KAVLG-FGV-VWWSIATALT  186 (466)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~-~~~-~~~~~~~~~~  186 (466)
                      +..+.............|. +.+++|.+..+.+++.+...++..++.++.|++.||+.+ |+... ... ....++....
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  302 (379)
T TIGR00881       223 LGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVY  302 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence            3333333334444455555 456789999999999999999999999999999998643 33222 211 2222222222


Q ss_pred             HHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHH
Q 012315          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVF  263 (466)
Q Consensus       187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~  263 (466)
                      ...+..+.+...+..++.|+......+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+.+||+..|
T Consensus       303 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       303 WLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             hcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            22111144555566677777665566667788999999999999999999999999999999999999999998754

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.32  E-value=2e-11  Score=120.26  Aligned_cols=146  Identities=14%  Similarity=0.149  Sum_probs=114.8

Q ss_pred             HHHhhhhhhhhHHhHhhhhhc-cCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhh
Q 012315          113 FLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK  191 (466)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~  191 (466)
                      .++............+.+.++ ++ +..+.+++.++..++.+++.+++++++||+|+|+.+.++.++.+++.++..+.+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~  309 (437)
T TIGR00792       231 YLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGS  309 (437)
T ss_pred             HHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcch
Confidence            333333333333344554443 34 5677788888889999999999999999999999999999888888777766531


Q ss_pred             hchhHHHHHHHHHHhhhccchhhHHHHHhcccC-------CCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCch
Q 012315          192 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-------VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP  260 (466)
Q Consensus       192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~  260 (466)
                       +.+.+++..++.|++.+...+...++++|..+       ++++|.+.|+++....+|..+++.+.|++.+..||.
T Consensus       310 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       310 -NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence             56667777888899999888899999998865       456799999999999999999999999998877763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00898 2A0119 cation transport protein

Probab=99.32  E-value=1.2e-11  Score=124.03  Aligned_cols=151  Identities=13%  Similarity=-0.023  Sum_probs=114.6

Q ss_pred             hhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhh
Q 012315          128 LPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIG  207 (466)
Q Consensus       128 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~  207 (466)
                      +...++++.+..   +...+..+..+++.++.+++.||+|||+.+.++.++.+++.++..+.+..+.+..++..++.+++
T Consensus       347 ~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  423 (505)
T TIGR00898       347 VLDLGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFG  423 (505)
T ss_pred             hccccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            344455555543   33344556777888999999999999999999999999888888777622224455556667777


Q ss_pred             hccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhhhcccC
Q 012315          208 EGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSS  284 (466)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~  284 (466)
                      .+..++..+.+..|.+|++.|++++|+.+....+|.+++|.+.+ + ...++..++.+.+++.++..+..++ .||.
T Consensus       424 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-lpet  497 (505)
T TIGR00898       424 ITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLF-LPET  497 (505)
T ss_pred             HHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHc-CcCC
Confidence            77778888999999999999999999999999999999999998 4 3456777888877777776655544 4443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.32  E-value=1.1e-10  Score=112.05  Aligned_cols=175  Identities=17%  Similarity=0.227  Sum_probs=137.0

Q ss_pred             HHHHHHHHhhhhhhhhHHhHhhhhhccC-CChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHH
Q 012315          108 LCFSAFLLCNMDRVNMSIAILPMSAEFN-WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (466)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  186 (466)
                      ...+..++.+.....+....+.+.++.| .+....+.+.++..+.-++.-...+++..|+|.|+++.++.+..++=..++
T Consensus       211 ~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~  290 (400)
T PF03825_consen  211 VFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLY  290 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            3334445555566666667777778887 777888888889889999999999999999999999999999999999998


Q ss_pred             HHHhhhchhHHHH----HHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHH-HHHhHHHHHhhhHHHhhcccCch-
Q 012315          187 PVAAKLGLPFLLV----VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYS-GMYLGSVTGLAFSPFLIHRFGWP-  260 (466)
Q Consensus       187 ~~~~~~~~~~l~~----~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~ig~~~~~~l~~~~gw~-  260 (466)
                      ++..+ +.+..++    ...+.|+..+..+.....++.+.+|++.|+++.++++. ..++|..+|..++|++.+++|-+ 
T Consensus       291 a~~~~-~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~  369 (400)
T PF03825_consen  291 AYFSD-PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG  369 (400)
T ss_pred             HHhcC-CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh
Confidence            88731 4333332    34569999999999999999999999999999999876 56899999999999999987744 


Q ss_pred             -----HHHHHHhHHHHHHHHHHhhhccc
Q 012315          261 -----SVFYSFGSLGTVWFTVWLSKAHS  283 (466)
Q Consensus       261 -----~~~~~~~~~~~~~~~~~~~~~~~  283 (466)
                           ..+.+.+++.++..++..++.++
T Consensus       370 ~~~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  370 MFDWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence                 44555555555555555554444

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.31  E-value=1.7e-10  Score=112.39  Aligned_cols=157  Identities=11%  Similarity=0.006  Sum_probs=120.3

Q ss_pred             hHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHh---hhchhHHH
Q 012315          123 MSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA---KLGLPFLL  198 (466)
Q Consensus       123 ~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~  198 (466)
                      +....|. +.+++|.++.+.++......++..++.++.|++.||+++|+.+.++.++.+++.++..+.+   ..+.+.++
T Consensus       234 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  313 (406)
T PRK15402        234 WIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLT  313 (406)
T ss_pred             HHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHH
Confidence            3334455 4567899999999988888889999999999999999999999999888877777666543   12456667


Q ss_pred             HHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHh
Q 012315          199 VVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL  278 (466)
Q Consensus       199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  278 (466)
                      +..++.|++.+...+.......... +++||+..+.++....+|..+|+.+++.+.+..++....+..++..++..+...
T Consensus       314 ~~~~~~g~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  392 (406)
T PRK15402        314 AGLSLYAFGIGLANAGLYRLTLFSS-DVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVR  392 (406)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHhhhc-cccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHH
Confidence            7788899998887776666655444 589999999999999999999999999998888876655554444444433333


Q ss_pred             hh
Q 012315          279 SK  280 (466)
Q Consensus       279 ~~  280 (466)
                      .+
T Consensus       393 ~~  394 (406)
T PRK15402        393 IF  394 (406)
T ss_pred             HH
Confidence            33

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.31  E-value=2.4e-11  Score=112.23  Aligned_cols=175  Identities=18%  Similarity=0.110  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHH
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (466)
                      .+.+++.++..+.....++..+|. +.++|+.++.+.|.....+.+...+..+.+|+++||+|.+|++.+....++++..
T Consensus       220 ~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~  299 (417)
T COG2223         220 TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAA  299 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHH
Confidence            445555666666666667777776 7788999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHhh-----hchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC-
Q 012315          185 LTPVAAK-----LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-  258 (466)
Q Consensus       185 ~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-  258 (466)
                      +..+..+     .+....+...+..++..|........++..++| ++-|.+.|+.....++|+..-|..-+...+..| 
T Consensus       300 ~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~  378 (417)
T COG2223         300 LLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS  378 (417)
T ss_pred             HHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhccc
Confidence            7776641     145555555555666666666677788888885 688999999999999999999999999988888 


Q ss_pred             chHHHHHHhHHHHHHHHHHhhhc
Q 012315          259 WPSVFYSFGSLGTVWFTVWLSKA  281 (466)
Q Consensus       259 w~~~~~~~~~~~~~~~~~~~~~~  281 (466)
                      +...|++...+.+++.++.+...
T Consensus       379 ~~~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         379 YTGAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999988888888777655443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.31  E-value=1.3e-10  Score=112.19  Aligned_cols=150  Identities=11%  Similarity=-0.013  Sum_probs=110.8

Q ss_pred             HhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHH-HhhhchhHHHHHHHHHH
Q 012315          127 ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV-AAKLGLPFLLVVRVFMG  205 (466)
Q Consensus       127 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~l~G  205 (466)
                      .|.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .+  +.+..++..++.+
T Consensus       223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~  300 (382)
T PRK10091        223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGG--MKTASLIFAFICC  300 (382)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHH
Confidence            45566678999999999999999999999999999999999999999888888877765544 34  4555555666666


Q ss_pred             hhhccchhhHH-HHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc-cCchHHHHHHhHHHHHHHHHHhhh
Q 012315          206 IGEGVAMPAMN-NILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-FGWPSVFYSFGSLGTVWFTVWLSK  280 (466)
Q Consensus       206 ~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~-~gw~~~~~~~~~~~~~~~~~~~~~  280 (466)
                      ++.....+... ....+..+++.++.+  ..+....+|..+||.++|++.+. .+|+..+.+.++++++........
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        301 AGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             HHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence            66544444333 344444444445544  34677889999999999999985 679999998877766655444433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.29  E-value=1.3e-10  Score=113.25  Aligned_cols=162  Identities=13%  Similarity=0.107  Sum_probs=111.8

Q ss_pred             HHHHHHHHHhhhhhhhhHHhHhhhhhcc--CCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchH-HHHHHHHHHHHH
Q 012315          107 VLCFSAFLLCNMDRVNMSIAILPMSAEF--NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV-LGFGVVWWSIAT  183 (466)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~  183 (466)
                      +...+.+++.......+...+|.+.+++  |.+..+.+++.....++..++.++.|+++||+++|+. +....++..++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~  324 (412)
T TIGR02332       245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW  324 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH
Confidence            3344444545555556667788877764  6688889999999999999999999999999998775 344444444443


Q ss_pred             HHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC-chHH
Q 012315          184 ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSV  262 (466)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-w~~~  262 (466)
                      .+.....  +....+.+-.+.+++.....+.......+.+|+++|++++|+.+....+|.+++|.+.+.+.+..| |+..
T Consensus       325 ~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~  402 (412)
T TIGR02332       325 LLASATD--HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSG  402 (412)
T ss_pred             HHHHhcC--CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchh
Confidence            2222222  222222222233333333334444555678899999999999999999999999999999999875 9999


Q ss_pred             HHHHhHHH
Q 012315          263 FYSFGSLG  270 (466)
Q Consensus       263 ~~~~~~~~  270 (466)
                      |++.+++.
T Consensus       403 ~~~~~~~~  410 (412)
T TIGR02332       403 LWFVAALL  410 (412)
T ss_pred             HHHHHHHH
Confidence            88766543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.29  E-value=5.6e-11  Score=115.60  Aligned_cols=148  Identities=14%  Similarity=0.153  Sum_probs=106.9

Q ss_pred             HhhhhhccCCChhhHHHHHHHHH-HHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHH---HHHhhhchhHHHHHHH
Q 012315          127 ILPMSAEFNWNPATVGLIQSSFF-WGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT---PVAAKLGLPFLLVVRV  202 (466)
Q Consensus       127 ~~~~~~~~~~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~  202 (466)
                      .+.+.+++|+++.+++++.+... ++..++.++.|++.||+|+|+.+..+.++..+..+..   ++.+ .+.+.+++..+
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~  311 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP-KHLWTMALAIG  311 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHH
Confidence            34567779999999999987654 5688999999999999999998887776666554433   3332 14555555443


Q ss_pred             ----HHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHh
Q 012315          203 ----FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL  278 (466)
Q Consensus       203 ----l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  278 (466)
                          ..|++.+...+....++.+.+|.+    ..++++...++|..+++.++|.+.+.+||+..|.+.++++++..++..
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        312 IENLCGGMGTAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence                445555555666677777766644    456666667788877778999999999999999998888777655543


Q ss_pred             h
Q 012315          279 S  279 (466)
Q Consensus       279 ~  279 (466)
                      .
T Consensus       388 ~  388 (402)
T PRK11902        388 L  388 (402)
T ss_pred             H
Confidence            3

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.28  E-value=1.4e-10  Score=109.50  Aligned_cols=162  Identities=10%  Similarity=0.069  Sum_probs=136.9

Q ss_pred             hHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 012315          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (466)
Q Consensus       123 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (466)
                      +......+-++-+.+....|.+.++..+.-++.-.+..++.+|+|.|+.++++..++++=.+++++++  +.+.+.+.+.
T Consensus       243 f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~--~~~~i~~~kl  320 (412)
T PF01306_consen  243 FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT--NPWVISLIKL  320 (412)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----SHHHHHHHHH
T ss_pred             HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc--chHHHHHHHH
Confidence            44444444445555677899999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHhhhccchhhHHHHHhcccCCCchhHHHHH-HHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhhhc
Q 012315          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLAL-VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA  281 (466)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~  281 (466)
                      +.|+-.+........++++.+|++-.++...+ .+...++|..+.+.++|.+.|+.|.+..|++.+.+.++..++..+..
T Consensus       321 LH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l  400 (412)
T PF01306_consen  321 LHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTL  400 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeee
Confidence            99999999999999999999998888888887 47889999999999999999999999999999998887777776666


Q ss_pred             ccCCC
Q 012315          282 HSSPA  286 (466)
Q Consensus       282 ~~~~~  286 (466)
                      +++++
T Consensus       401 ~~~~~  405 (412)
T PF01306_consen  401 KKDKK  405 (412)
T ss_dssp             --SSS
T ss_pred             cCCCc
Confidence            55443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.28  E-value=5.5e-11  Score=118.00  Aligned_cols=153  Identities=17%  Similarity=0.034  Sum_probs=105.5

Q ss_pred             HHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcch-------HHHHHHHHHHHHHHHHHHHhhhchh
Q 012315          124 SIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKA-------VLGFGVVWWSIATALTPVAAKLGLP  195 (466)
Q Consensus       124 ~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~~~~~~~~~~~~~~~~~~~~  195 (466)
                      ....|. +.+++|++..+.+.+.++..++..++.+++|+++||++||+       ...+..++.++..++....+  +.+
T Consensus       272 ~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~--~~~  349 (476)
T PLN00028        272 DNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRAN--SLG  349 (476)
T ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccc--hHH
Confidence            334454 56678999999999999999999999999999999998652       22233333333334444444  555


Q ss_pred             HHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHH
Q 012315          196 FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFT  275 (466)
Q Consensus       196 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~  275 (466)
                      ..++..++.+++.+...+...+++.+.. ++++|.+.|+.+.+..+|..++|.+.+ ..+..+|+..|++.+++.++..+
T Consensus       350 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~  427 (476)
T PLN00028        350 AAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTL  427 (476)
T ss_pred             HHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHH
Confidence            5555556666665555555666666665 478999999988877778777776654 22234699999988877777666


Q ss_pred             HHhhh
Q 012315          276 VWLSK  280 (466)
Q Consensus       276 ~~~~~  280 (466)
                      +.++.
T Consensus       428 ~~~~~  432 (476)
T PLN00028        428 PVAFI  432 (476)
T ss_pred             HHHhe
Confidence            55444

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.28  E-value=9.4e-11  Score=108.38  Aligned_cols=146  Identities=20%  Similarity=0.172  Sum_probs=127.3

Q ss_pred             hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhc
Q 012315          130 MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEG  209 (466)
Q Consensus       130 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~  209 (466)
                      -.+++|++..++.++.....+..+++++++|+|.||+|.|+++.++.++..+.++...+..  ....++++..+.|...|
T Consensus       279 g~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~--~~~~f~i~gll~g~s~G  356 (438)
T COG2270         279 GAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE--GELDFWILGLLVGTSLG  356 (438)
T ss_pred             HHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc--ccHHHHHHHHHHHHhcc
Confidence            4459999999999999999999999999999999999999999999999888887777766  56667778889999999


Q ss_pred             cchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC-chHHHHHHhHHHHHHHHHH
Q 012315          210 VAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFTVW  277 (466)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~  277 (466)
                      ..++...++..+.+|+++-++.+|+++.....+..+||.+.+.+.+.+| -|..+....++.++.+++.
T Consensus       357 ~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L  425 (438)
T COG2270         357 GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL  425 (438)
T ss_pred             hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence            9999999999999999999999999999999999999999999988766 6666665555555544433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.26  E-value=1.2e-10  Score=112.97  Aligned_cols=151  Identities=15%  Similarity=0.150  Sum_probs=118.3

Q ss_pred             HHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhc-ccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 012315          124 SIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD-TVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (466)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (466)
                      ....|.+.++.+.++.+.+++.++..++...+..+.+++.| |++.++.+..+.++.+++.++.++.+  +++.+++..+
T Consensus       228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~  305 (400)
T PRK11646        228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--NLQQLFTLIC  305 (400)
T ss_pred             HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHH
Confidence            34567766666557888999988888877766666677665 46767777888888888887777777  7777777778


Q ss_pred             HHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhccc---C-chHHHHHHhHHHHHHHHH
Q 012315          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF---G-WPSVFYSFGSLGTVWFTV  276 (466)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~---g-w~~~~~~~~~~~~~~~~~  276 (466)
                      +.|++.+...+...+++.+..|+++||+++|+++....+|..+||.++|++.++.   + ....+.+.+++.++..+.
T Consensus       306 l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        306 LFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            8888888888889999999999999999999999999999999999999999864   3 345555555555554443

>TIGR00896 CynX cyanate transporter

Probab=99.26  E-value=2.5e-10  Score=109.17  Aligned_cols=136  Identities=15%  Similarity=0.083  Sum_probs=109.3

Q ss_pred             hhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhccc-CcchHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q 012315          120 RVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWWSIATALTPVAAKLGLPFLL  198 (466)
Q Consensus       120 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (466)
                      .......+|.+.++.|.+..+.+.+.++..++.++++++.|++.||+ +||+.+.++.++.+++.+++.+.+  +.....
T Consensus       213 ~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  290 (355)
T TIGR00896       213 YYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP--MHGLWA  290 (355)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh--hhHHHH
Confidence            34445567777778899999999999999999999999999999999 566677788888888877776665  322222


Q ss_pred             HHHHHHHhhhccchhhHHHHHhcccC-CCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC
Q 012315          199 VVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (466)
Q Consensus       199 ~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g  258 (466)
                       ..++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.|++.++.|
T Consensus       291 -~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       291 -WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             -HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             4567899998888887777765554 4667899999999999999999999999998776

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.26  E-value=3.4e-11  Score=108.46  Aligned_cols=133  Identities=11%  Similarity=0.031  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCC
Q 012315          147 SFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA  226 (466)
Q Consensus       147 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  226 (466)
                      +..+.-..|.++.+++.||+|||+.|...+++++++.++.....  +-....+..+..-++..+.+.+.+.|..|.+|..
T Consensus       389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~--~rn~~tvllf~arafisg~fqvaYvYtPEVyPTa  466 (528)
T KOG0253|consen  389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK--TRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTA  466 (528)
T ss_pred             HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHhchheEEEEecCcccchh
Confidence            34456667889999999999999999999999999998888777  4333333344444445556778889999999999


Q ss_pred             chhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhhhccc
Q 012315          227 ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHS  283 (466)
Q Consensus       227 ~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~  283 (466)
                      -|+.+.|..+....+|+++.|+++  +.....-..+..+.+.+.++..+...++.-|
T Consensus       467 vRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiE  521 (528)
T KOG0253|consen  467 VRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIE  521 (528)
T ss_pred             hhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeec
Confidence            999999999999999999999999  3333344455666777777777666555444

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.25  E-value=2.2e-10  Score=113.77  Aligned_cols=175  Identities=11%  Similarity=0.018  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHH--------HHH
Q 012315          105 IVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVL--------GFG  175 (466)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~--------~~~  175 (466)
                      .++...+..+........+...+|. +.+.+|.+..+.|++.++..++..++.++.|+++||+++|+..        ..+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  341 (465)
T TIGR00894       262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNG  341 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            3444555555555555566666776 4566899999999999999999999999999999998654321        111


Q ss_pred             HHHHHHHHHHHHHHh-hhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhh
Q 012315          176 VVWWSIATALTPVAA-KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI  254 (466)
Q Consensus       176 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~  254 (466)
                      ......+..+..... ..+.+..++...+.+.+.+...+.......+..| +.+|.++|+.+....+|..++|.+.+++.
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~  420 (465)
T TIGR00894       342 IGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNIL  420 (465)
T ss_pred             HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence            111111111111111 1133444444555555555555555556667775 58999999999999999999999999987


Q ss_pred             ccc---CchHHHHHHhHHHHHHHHHHhhh
Q 012315          255 HRF---GWPSVFYSFGSLGTVWFTVWLSK  280 (466)
Q Consensus       255 ~~~---gw~~~~~~~~~~~~~~~~~~~~~  280 (466)
                      +..   +|+..|.+.++..++..+.....
T Consensus       421 ~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       421 SQDSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            653   38889988887777766554443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.23  E-value=1.7e-08  Score=94.99  Aligned_cols=293  Identities=10%  Similarity=0.075  Sum_probs=183.4

Q ss_pred             HhHhhhhhc-cCCChhhHH-HHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 012315          125 IAILPMSAE-FNWNPATVG-LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (466)
Q Consensus       125 ~~~~~~~~~-~~~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (466)
                      ...|++.+. .|++..|+. -+.-+..-.+....++...+.|..+.|++++++.+...+...+..+.+  +.+.+-+..+
T Consensus        25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~--sv~~mq~~q~  102 (412)
T PF01770_consen   25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT--SVLAMQLMQF  102 (412)
T ss_pred             cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC--cHHHHHHHHH
Confidence            345555554 799988874 566677777888899999999999999999999999999999988888  9999999999


Q ss_pred             HHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc--cCchHHHHHHhHHHHHHHHHHhhh
Q 012315          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--FGWPSVFYSFGSLGTVWFTVWLSK  280 (466)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~--~gw~~~~~~~~~~~~~~~~~~~~~  280 (466)
                      +.|++.+. ..+.++++-...|+++-.++.+......-+|..++.+++..++..  .++.....+......+.++..++ 
T Consensus       103 ~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~f-  180 (412)
T PF01770_consen  103 FYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALF-  180 (412)
T ss_pred             HHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH-
Confidence            99998775 677889999999999999999999999999999999999887763  33555555544434443433333 


Q ss_pred             cccCCCCC---CCC------ChHHHHHH---hhc---ccCCCC----CCC-------cchhhhhcChhHHHHHHHHHHHH
Q 012315          281 AHSSPAED---PQL------RPAEKKLI---VSS---CASKEP----VKT-------IPWGLILSKPPVWALIVSHFCHN  334 (466)
Q Consensus       281 ~~~~~~~~---~~~------~~~~~~~~---~~~---~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~  334 (466)
                      .|..++..   +..      ++.+.+..   .++   .+++++    ..+       ..+++..++|.++...+...+..
T Consensus       181 LP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~at  260 (412)
T PF01770_consen  181 LPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFAT  260 (412)
T ss_pred             cCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            34332210   000      00000000   000   000000    001       13445567888777777777767


Q ss_pred             HHHHHHHHHHHHHHHH-----------------------------------------HHHHHHhHHHHHHHHHHhcCCch
Q 012315          335 WGTFILLTWMPTYYNQ-----------------------------------------IMQSIGFLGPAFFLTQLSHVDSP  373 (466)
Q Consensus       335 ~~~~~~~~~~~~~l~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  373 (466)
                      .++..+.++......+                                         .......++.+..+..+...++.
T Consensus       261 cgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~I  340 (412)
T PF01770_consen  261 CGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNI  340 (412)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            7776666666665555                                         22222222333334444555556


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhh-hhcccCccchhhHHHHHHHHHHHHH
Q 012315          374 AMAVLCMACSQGTDAFSQSGLYS-NHQDIAPRYSGVLLGLSNTAGVLAG  421 (466)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~g~~~g~~~~~~~~g~  421 (466)
                      |...+..++.........+.... +..+...+..|.++|+++.+..+-.
T Consensus       341 wv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQ  389 (412)
T PF01770_consen  341 WVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQ  389 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHH
Confidence            66555555555444443333322 2333444566677776665544433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.23  E-value=5.1e-10  Score=97.40  Aligned_cols=140  Identities=13%  Similarity=0.075  Sum_probs=109.1

Q ss_pred             hhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHH-HHHHHHHHHHHhhhchhHHHHHHHHHHhh
Q 012315          129 PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW-WSIATALTPVAAKLGLPFLLVVRVFMGIG  207 (466)
Q Consensus       129 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~G~~  207 (466)
                      .+++.+|+|+...+-+.+.......+.+++.|.++||+|++...+.+..+ ..++-....|.    ++.=+....+.|+.
T Consensus       290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft----~lsPy~~m~~lGLs  365 (459)
T KOG4686|consen  290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT----FLSPYTSMTFLGLS  365 (459)
T ss_pred             HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh----hccHHHHHHHHhhh
Confidence            47899999999999999999899999999999999999999877755544 34444444443    23335566778888


Q ss_pred             hccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC---chHHHHH-HhHHHHH
Q 012315          208 EGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG---WPSVFYS-FGSLGTV  272 (466)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g---w~~~~~~-~~~~~~~  272 (466)
                      ....-......++...|+++.|++.|..+...++|..+.|+++|++.+.-|   |--+|.+ .+.+++.
T Consensus       366 ysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~  434 (459)
T KOG4686|consen  366 YSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALT  434 (459)
T ss_pred             HHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHH
Confidence            777666678888999999999999999999999999999999999998654   4444443 3333333

>PRK09848 glucuronide transporter; Provisional

Probab=99.21  E-value=2.2e-10  Score=113.07  Aligned_cols=149  Identities=17%  Similarity=0.121  Sum_probs=113.9

Q ss_pred             HHHHHhhhhhhhhHHhHhhh-hhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 012315          111 SAFLLCNMDRVNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA  189 (466)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  189 (466)
                      +..++............|.+ .+.+|.+....++......++.+++.++++++.||+|+|+.+.++.++..++.++..+.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~  314 (448)
T PRK09848        235 IGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV  314 (448)
T ss_pred             HHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence            33333333334444455654 44567666555555555567788899999999999999999999999888888777765


Q ss_pred             hhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCC-------chhHHHHHHHHHHHhHHHHHhhhHHHhhcccCc
Q 012315          190 AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA-------ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (466)
Q Consensus       190 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw  259 (466)
                      +..+.+.+++..++.|+|.+...+...++.+|..|.+       ++|...|+++....+|..+|+.+.+.+.+..|+
T Consensus       315 ~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        315 SVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4335677777788899999999999999999988643       459999999999999999999999988776655

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.19  E-value=5.3e-10  Score=123.61  Aligned_cols=147  Identities=15%  Similarity=0.194  Sum_probs=123.3

Q ss_pred             HHhHhh-hhhccCCChh-hHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 012315          124 SIAILP-MSAEFNWNPA-TVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR  201 (466)
Q Consensus       124 ~~~~~~-~~~~~~~s~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  201 (466)
                      ...+|. +.+.+|.+.. +.|++.+...++.++++++.|++.||+++++.+.++.++.+++.++..+..  +.+.+++..
T Consensus       252 ~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  329 (1146)
T PRK08633        252 QANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP--SLASVLVLF  329 (1146)
T ss_pred             HHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh--hHHHHHHHH
Confidence            334444 5677899998 999999999999999999999999999999999999888888888888777  888888889


Q ss_pred             HHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc-ccCchHHHHHHhHHHHH
Q 012315          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFGWPSVFYSFGSLGTV  272 (466)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~-~~gw~~~~~~~~~~~~~  272 (466)
                      ++.|++.++..+...+++.+..|+++||+++|+.+....+|.++++.+++.+.. .+++...|++.+.+.++
T Consensus       330 ~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        330 FLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            999999999888999999999999999999999999999999888888776654 23455566655554433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.19  E-value=1.2e-09  Score=105.68  Aligned_cols=146  Identities=17%  Similarity=0.103  Sum_probs=115.3

Q ss_pred             hhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhh
Q 012315          129 PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGE  208 (466)
Q Consensus       129 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~  208 (466)
                      .+.+.+|.++.+.|++.+...++..++++..+++.||.++|+.+..+.+ .++..++..+.+  +++...+..++.|++.
T Consensus       231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~--~~~~~~~~~~~~G~~~  307 (393)
T PRK11195        231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQH--SLLPAYPLLILIGALG  307 (393)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHh--HHHHHHHHHHHHHHhh
Confidence            3556789999999999999999999999999999999999988887753 444444555555  6777777788899998


Q ss_pred             ccchhhHHHHHhcccCCCc-hhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHh
Q 012315          209 GVAMPAMNNILSKWVPVAE-RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL  278 (466)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  278 (466)
                      +...+...+.+.+..|++. +|++.++.+...++|..++..+.+.+ +.+|-+..+.+.++..++.+.+..
T Consensus       308 g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  377 (393)
T PRK11195        308 GFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMAL  377 (393)
T ss_pred             hhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence            8888888888888766554 79999999999999999999999855 567877777665555444444433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.17  E-value=1.3e-09  Score=105.42  Aligned_cols=173  Identities=11%  Similarity=0.009  Sum_probs=118.9

Q ss_pred             HHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHH-
Q 012315          110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV-  188 (466)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-  188 (466)
                      ++.+++.+.....++..+|.+.++ ..+.........+..+...+..+++|+++||+|+|+++.++.+.+.++...... 
T Consensus       258 slly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~  336 (462)
T PRK15034        258 SLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLT  336 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence            333344443444455556664433 223333333345567788889999999999999999999998877777643322 


Q ss_pred             Hhh---hchhHHHHHHHHHHhhhccchhhHHHHHhcccCC---------------------CchhHHHHHHHHHHHhHHH
Q 012315          189 AAK---LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV---------------------AERSRSLALVYSGMYLGSV  244 (466)
Q Consensus       189 ~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~---------------------~~r~~~~~~~~~~~~~g~~  244 (466)
                      .+.   .+++.+.+..+...++.|........++.+++|+                     ++-|.+.|+.+....+|+.
T Consensus       337 lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf  416 (462)
T PRK15034        337 LPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGF  416 (462)
T ss_pred             hccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccc
Confidence            221   1456666666666666777777888888888874                     1567889999999999999


Q ss_pred             HHhhhHHHhhcccC-chHHHHHHhHHHHHHHHHHhhhccc
Q 012315          245 TGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFTVWLSKAHS  283 (466)
Q Consensus       245 ig~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~~~~~~  283 (466)
                      +-|.+-+...+..| +...|++..+..+++.++.+...-+
T Consensus       417 ~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r  456 (462)
T PRK15034        417 FIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR  456 (462)
T ss_pred             hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99988888777655 8888888888887777766655443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.17  E-value=1.1e-09  Score=106.30  Aligned_cols=137  Identities=11%  Similarity=0.057  Sum_probs=95.7

Q ss_pred             Hhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 012315          127 ILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMG  205 (466)
Q Consensus       127 ~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  205 (466)
                      .|. +.+++|.++.+.+.+.+...++..++.++.|++.||+|+|+.+.++..+..++.++..+.+  +.+..+....+.+
T Consensus       226 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~  303 (392)
T PRK10473        226 SPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP--SHAVSLFGITLIC  303 (392)
T ss_pred             CHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            344 5567899999999999999999999999999999999999999999998888888777766  4444344444444


Q ss_pred             hhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHH
Q 012315          206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLG  270 (466)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~  270 (466)
                      .|.+...+..  ...+..|.++|+   |......+++..+|+.+++++.+..|+.....+.+.+.
T Consensus       304 ~g~~~~~~~~--~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~  363 (392)
T PRK10473        304 AGFSVGFGVA--MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI  363 (392)
T ss_pred             HHHHHHhHHH--HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            4443333332  333344544443   44445556777788888888888778766555555433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.16  E-value=3.8e-10  Score=112.70  Aligned_cols=137  Identities=12%  Similarity=0.164  Sum_probs=115.0

Q ss_pred             hhhhHHhHhhh-hhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHH--HhhhchhH
Q 012315          120 RVNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV--AAKLGLPF  196 (466)
Q Consensus       120 ~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~  196 (466)
                      ........|.+ .+.+|.++.+.|+......++..++.++.|++.||+|||+.+.++..+.+++..+..+  .+..+.+.
T Consensus       271 ~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  350 (485)
T TIGR00711       271 LYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLA  350 (485)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Confidence            33344456664 4558999999999999999999999999999999999999999999888888877663  22224566


Q ss_pred             HHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc
Q 012315          197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (466)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~  256 (466)
                      +....++.|++.+...+.......+..|+++++++.|+.+....+|..+|+.+.+.+.++
T Consensus       351 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       351 IALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777788899999988878888888889999999999999999999999999999988775

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10133 L-fucose transporter; Provisional

Probab=99.16  E-value=1.2e-09  Score=107.14  Aligned_cols=140  Identities=10%  Similarity=0.033  Sum_probs=114.1

Q ss_pred             hhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhcc
Q 012315          131 SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGV  210 (466)
Q Consensus       131 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~  210 (466)
                      ++.+|.++.+.++....+.++..+++++.|++.||+|+|+++..+.++.+++.++..+.+  +.+ .+....+.|++.+.
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~--~~~-~~~~~~l~glg~~~  363 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--GHV-GLIALTLCSAFMSI  363 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC--ChH-HHHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999999999988888777766666655  432 34556788999999


Q ss_pred             chhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC-chHHHHHHhHHHHHHHH
Q 012315          211 AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFT  275 (466)
Q Consensus       211 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~  275 (466)
                      .+|...+...+.+| ++.+.+.++..+ ..+|..++|++.|.+.+..| -+..|++..+..+....
T Consensus       364 i~P~~~s~a~~~~~-~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        364 QYPTIFSLGIKNLG-QDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             HHHHHHHHHHcccc-hhhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            99999999999986 456778887764 44788899999999999887 78888866555444443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.16  E-value=6e-10  Score=122.86  Aligned_cols=150  Identities=12%  Similarity=0.047  Sum_probs=120.9

Q ss_pred             hhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHH----------
Q 012315          121 VNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA----------  189 (466)
Q Consensus       121 ~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------  189 (466)
                      ..+...+|. +.+.+|.+..+.|++.+.+.++.++++++.|++.|+.++++.+..+.++.+++.+.+.+.          
T Consensus       242 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  321 (1140)
T PRK06814        242 AVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQ  321 (1140)
T ss_pred             HHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccc
Confidence            334445565 455689999999999999999999999999999999888777776666666555544442          


Q ss_pred             ----------hhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc-ccC
Q 012315          190 ----------AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFG  258 (466)
Q Consensus       190 ----------~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~-~~g  258 (466)
                                .  +.+.+++..++.|++.+...+...+++.+.+|+++||+++|+.++...+|..+++++.+.+.+ ..+
T Consensus       322 ~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~  399 (1140)
T PRK06814        322 LKSILVFLSKR--HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFS  399 (1140)
T ss_pred             ccchhhhhccc--ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                      3  677788888999999999999999999999999999999999999999999999999998874 456


Q ss_pred             chHHHHHHhHHHHH
Q 012315          259 WPSVFYSFGSLGTV  272 (466)
Q Consensus       259 w~~~~~~~~~~~~~  272 (466)
                      +...+++.+++.++
T Consensus       400 ~~~~~~~~~~~~~~  413 (1140)
T PRK06814        400 IPWIILFIALANLI  413 (1140)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666655554443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.14  E-value=1.2e-09  Score=105.69  Aligned_cols=140  Identities=15%  Similarity=0.249  Sum_probs=104.4

Q ss_pred             hHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhh---hchhHHH
Q 012315          123 MSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK---LGLPFLL  198 (466)
Q Consensus       123 ~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~  198 (466)
                      .....|. +.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.++..+...   .+.+.++
T Consensus       225 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (385)
T TIGR00710       225 FFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMII  304 (385)
T ss_pred             HHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            3334455 45678999999999999999999999999999999999999999888887777766655421   1234455


Q ss_pred             HHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHh-HHHHHhhhHHHhhcccCchHHHH
Q 012315          199 VVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHRFGWPSVFY  264 (466)
Q Consensus       199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~ig~~~~~~l~~~~gw~~~~~  264 (466)
                      ...++.|++.+...+.......|..| ++++++.++.+..... |.+.++. .+.+.+..+|...+.
T Consensus       305 ~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~-~~~~~~~~~~~~~~~  369 (385)
T TIGR00710       305 GPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL-VSLIHGNTAWPMSLS  369 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH-HHhccccChHHHHHH
Confidence            56778889888888888888888886 6899999998877665 4555554 445544444544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.14  E-value=1.4e-09  Score=107.97  Aligned_cols=152  Identities=10%  Similarity=0.010  Sum_probs=114.8

Q ss_pred             HHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHH
Q 012315          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP  187 (466)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  187 (466)
                      ...+..++............+++.++...+....+++.++..++.+++.+++++++||+|+|+.+.++.++..++.+...
T Consensus       235 ~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~  314 (473)
T PRK10429        235 CLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLL  314 (473)
T ss_pred             HHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence            33333444444455555556666666554667778888888889999999999999999999999988887776665543


Q ss_pred             HH---hhhchhHHHHHHHHHHhhhccchhhHHHHHhcccC-------CCchhHHHHHHHHHHHhHHHHHhhhHHHhhccc
Q 012315          188 VA---AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-------VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF  257 (466)
Q Consensus       188 ~~---~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~  257 (466)
                      +.   ...+.+.+++..++.|++.+...+...++++|..+       .++.|..+|.......+|..+++.+.|++.+..
T Consensus       315 ~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~  394 (473)
T PRK10429        315 LMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI  394 (473)
T ss_pred             HHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            31   22256677777788899999989999999999965       344566889999999999999999999988766


Q ss_pred             Cc
Q 012315          258 GW  259 (466)
Q Consensus       258 gw  259 (466)
                      |+
T Consensus       395 Gy  396 (473)
T PRK10429        395 GY  396 (473)
T ss_pred             CC
Confidence            65

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.13  E-value=9.1e-10  Score=110.00  Aligned_cols=136  Identities=13%  Similarity=0.122  Sum_probs=114.7

Q ss_pred             hhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHh-hhchhHH
Q 012315          120 RVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA-KLGLPFL  197 (466)
Q Consensus       120 ~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~l  197 (466)
                      ........|. +++.+|.++.+.|+......++..++.++.|++.||+|+|+.+..+.++.+++.++..+.. ..+.+..
T Consensus       275 ~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  354 (495)
T PRK14995        275 LVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQA  354 (495)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence            3334445555 5666899999999999999999999999999999999999999989888888776655432 1255566


Q ss_pred             HHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc
Q 012315          198 LVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH  255 (466)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~  255 (466)
                      .+..++.|+|.+...+.....+.+..|+++++.+.++++...++|..+|+.+.+.+.+
T Consensus       355 ~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        355 WGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778899999999888888899999999999999999999999999999999998865

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.12  E-value=2.8e-09  Score=101.90  Aligned_cols=163  Identities=11%  Similarity=-0.032  Sum_probs=112.4

Q ss_pred             HHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCc---chHHH-HHHHHHHHHH
Q 012315          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG---KAVLG-FGVVWWSIAT  183 (466)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~---r~~~~-~~~~~~~~~~  183 (466)
                      ...+..++.....+.+...+|.+.++.|.+.. .+....+..+...++   .++++||.+|   |+... ...++.++..
T Consensus       196 ~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~  271 (368)
T TIGR00903       196 IIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFF  271 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            33344444444455566678887777888764 566666666655555   4677777654   33333 2344444444


Q ss_pred             HHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHH
Q 012315          184 ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVF  263 (466)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~  263 (466)
                      .+..+..  +.+..++...+.|++....++..+++.+|.+|++.|++++|+.+....+|+.++|++.+.+..  |.+..|
T Consensus       272 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f  347 (368)
T TIGR00903       272 LALAFEL--NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYF  347 (368)
T ss_pred             HHHHHcc--ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHH
Confidence            4444444  444445556667777777777888999999999999999999999999999999999987774  777788


Q ss_pred             HHHhHHHHHHHHHHh
Q 012315          264 YSFGSLGTVWFTVWL  278 (466)
Q Consensus       264 ~~~~~~~~~~~~~~~  278 (466)
                      .+.++..++..+...
T Consensus       348 ~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       348 TFLAILITIAFAIAL  362 (368)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888777777666543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11043 putative transporter; Provisional

Probab=99.12  E-value=2.7e-09  Score=103.83  Aligned_cols=140  Identities=14%  Similarity=0.093  Sum_probs=105.9

Q ss_pred             hHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHH---HHhhhchhHHHH
Q 012315          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP---VAAKLGLPFLLV  199 (466)
Q Consensus       123 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~  199 (466)
                      +....|.+.+++|.+..+.|+......++..++.+..+++.||+|+|+.+....+..+++.+...   +....+.+.+++
T Consensus       222 ~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (401)
T PRK11043        222 WLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLI  301 (401)
T ss_pred             HHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence            33456777778899999999998888899999999999999999999877666555554443322   211114555556


Q ss_pred             HHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHH
Q 012315          200 VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVF  263 (466)
Q Consensus       200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~  263 (466)
                      ...+.|++.+..++...+...+..| +++|+++|+++.....+...++.+.+.+.+.......+
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~  364 (401)
T PRK11043        302 PFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTTGS  364 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHH
Confidence            6677888888888888888877775 68999999999988888899999999887754444433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.09  E-value=3.6e-09  Score=103.81  Aligned_cols=154  Identities=15%  Similarity=0.113  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHH
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL  185 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  185 (466)
                      +....+..++............+++.++.--++...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++
T Consensus       227 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~  306 (428)
T PF13347_consen  227 FRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLL  306 (428)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHH
Confidence            33444445555555566666666765553324467888888999999999999999999999999999999999999988


Q ss_pred             HHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCC-------CchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC
Q 012315          186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV-------AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (466)
Q Consensus       186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g  258 (466)
                      ..+.+..+.+.+++..++.|++.+..+....++++|..+.       ++.|..+|.++....+|..+++.+.+.+.+..|
T Consensus       307 ~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  307 LFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            8877544889999999999999999999999999999863       446889999999999999999999998877655


Q ss_pred             c
Q 012315          259 W  259 (466)
Q Consensus       259 w  259 (466)
                      +
T Consensus       387 y  387 (428)
T PF13347_consen  387 Y  387 (428)
T ss_pred             c
Confidence            4

>TIGR00901 2A0125 AmpG-related permease

Probab=99.08  E-value=2.5e-09  Score=102.24  Aligned_cols=123  Identities=15%  Similarity=0.099  Sum_probs=99.6

Q ss_pred             hhhhhhHHhHhhhhhccCCChhhHHHHHHHHH-HHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHh-h----
Q 012315          118 MDRVNMSIAILPMSAEFNWNPATVGLIQSSFF-WGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA-K----  191 (466)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-~----  191 (466)
                      ..........|.+.+++|++..+.+.+.++.. ++..++.+++|++.||+|+|+.+..+.++.+++..+..+.. .    
T Consensus       223 ~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  302 (356)
T TIGR00901       223 LGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHD  302 (356)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            33444555666666669999999999888766 67889999999999999999999988888877766555431 0    


Q ss_pred             ----hchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHH
Q 012315          192 ----LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMY  240 (466)
Q Consensus       192 ----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  240 (466)
                          .+.+.+..+.++.+++.+...+...+++.+.+|+++||+.+|+++...+
T Consensus       303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       303 GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence                1456677788899999999999999999999999999999999887654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.07  E-value=6.3e-10  Score=106.03  Aligned_cols=134  Identities=18%  Similarity=0.264  Sum_probs=110.6

Q ss_pred             HHhhhhhhhhHHhHhhh-hhccCCC-hhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhh
Q 012315          114 LLCNMDRVNMSIAILPM-SAEFNWN-PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK  191 (466)
Q Consensus       114 ~~~~~~~~~~~~~~~~~-~~~~~~s-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~  191 (466)
                      +.............|.+ .+++|.+ ..+.+++.++..+...++.++.|++.||+++|+..........++.+...+...
T Consensus       216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (352)
T PF07690_consen  216 FLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF  295 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred             hHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444466667775 8889999 899999999999999999999999999999988887777777666665554431


Q ss_pred             h-chhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHh
Q 012315          192 L-GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGL  247 (466)
Q Consensus       192 ~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~  247 (466)
                      . +....++..++.|++.+...+...+++.+.+|+++||++.|+.+...++|..+||
T Consensus       296 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  296 SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            1 4566666788899999999999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.03  E-value=2.3e-08  Score=90.82  Aligned_cols=165  Identities=13%  Similarity=0.074  Sum_probs=131.1

Q ss_pred             HHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcc-cCcchHHHHHHHHHHHHHHHHHHHhh
Q 012315          113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWWSIATALTPVAAK  191 (466)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~  191 (466)
                      +-+.....++....+|.+..|.|+|..+.|++.+...+.....++....+++| -++|+..+....++.++...+.+.+.
T Consensus       217 mGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~  296 (395)
T COG2807         217 MGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG  296 (395)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh
Confidence            33344445666778999999999999999999999999999999999999996 46777788888888888888888874


Q ss_pred             hchhHHHHHHHHHHhhhccchhhHHHHHhcccCC-CchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC-chHHHHHHhHH
Q 012315          192 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV-AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSL  269 (466)
Q Consensus       192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-w~~~~~~~~~~  269 (466)
                      .+.+..   .++.|+|.|..++.....+.+..++ ++-++..|..+....+=..+||.+.|++-|..| |+..+...+..
T Consensus       297 ~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~  373 (395)
T COG2807         297 QLPILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALA  373 (395)
T ss_pred             hHHHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHH
Confidence            222222   5889999999999999999998764 444556667777777777899999999999766 99888887777


Q ss_pred             HHHHHHHHhhh
Q 012315          270 GTVWFTVWLSK  280 (466)
Q Consensus       270 ~~~~~~~~~~~  280 (466)
                      .++..+..+..
T Consensus       374 ~i~m~i~Gl~a  384 (395)
T COG2807         374 TLLMLIFGLRA  384 (395)
T ss_pred             HHHHHHHHhhc
Confidence            77666655543

>PRK09669 putative symporter YagG; Provisional

Probab=99.03  E-value=5.7e-09  Score=102.92  Aligned_cols=137  Identities=12%  Similarity=0.086  Sum_probs=102.6

Q ss_pred             hHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 012315          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (466)
Q Consensus       123 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (466)
                      .....+++.++.-.++...+.+.....+..+++.+++++++||+|+|+.+..+.++.+++.+...+.+..+.+.+++..+
T Consensus       248 ~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (444)
T PRK09669        248 RGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNI  327 (444)
T ss_pred             HhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            33344444444332344455666677788888999999999999999999988876665444333332226677777888


Q ss_pred             HHHhhhccchhhHHHHHhcccC-------CCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCc
Q 012315          203 FMGIGEGVAMPAMNNILSKWVP-------VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (466)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw  259 (466)
                      +.|++.+...+...++++|..+       +++.|...|..+....+|..+|+.++|++.+..|+
T Consensus       328 i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        328 LFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999885       23346778899999999999999999999887766

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.02  E-value=2.2e-07  Score=87.46  Aligned_cols=135  Identities=13%  Similarity=0.096  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHh
Q 012315          141 VGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILS  220 (466)
Q Consensus       141 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~  220 (466)
                      .+.+.-+-.+...+..+.+.++.+|+..+.=..+..+++.++.++.++++  +.+.-+++-++.+++.|........+..
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~--~v~~~l~Gv~las~ssg~GE~tfL~lt~  138 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSP--SVWVRLLGVVLASLSSGLGEVTFLSLTH  138 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeecc--chhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            34566667777888888899999999887777777888899999999988  8998889999999999988777777644


Q ss_pred             cccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCc--hHHHHHHhHHHHHHHHHHhhhccc
Q 012315          221 KWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW--PSVFYSFGSLGTVWFTVWLSKAHS  283 (466)
Q Consensus       221 ~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw--~~~~~~~~~~~~~~~~~~~~~~~~  283 (466)
                       .+++    ..++-+..+.+.++++|+..-..+.+ .|+  |..+++...+.++..+..++..+.
T Consensus       139 -~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  139 -FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             -hcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence             5543    35788888999999999988776666 554  777777777766555555544443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.02  E-value=1.4e-09  Score=103.14  Aligned_cols=155  Identities=17%  Similarity=0.170  Sum_probs=137.2

Q ss_pred             hHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 012315          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (466)
Q Consensus       123 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (466)
                      +..++=--.|+++..+...|........+-++.-++.+++.+|+|+-+++..++.+..+=.+...+..  |.|+.+..-+
T Consensus       390 v~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~--n~W~vLPiei  467 (618)
T KOG3762|consen  390 VFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ--NPWMVLPIEI  467 (618)
T ss_pred             HHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc--CchheeeHHH
Confidence            33333335678887888889888888899999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHhhhccchhhHHHHHhcccCCCchhHHHHHHHH-HHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhh
Q 012315          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYS-GMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS  279 (466)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  279 (466)
                      ++|+..+..+.+..+|+++..|++-|..+-++.+. ..++|-.+|.+++|.+.+.+|-+..|.+.++.+++.++....
T Consensus       468 lqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~  545 (618)
T KOG3762|consen  468 LQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS  545 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998654 567999999999999999999999999998888877665443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.00  E-value=6.5e-06  Score=80.09  Aligned_cols=231  Identities=9%  Similarity=0.027  Sum_probs=139.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCC-----ChhhHHHHHHHHHHHHHHH-HhhhhhhhcccCcchHHHHHH
Q 012315          103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNW-----NPATVGLIQSSFFWGYLLT-QIAGGIWADTVGGKAVLGFGV  176 (466)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~g~~~~~~~~~~~~~-~~~~g~l~dr~g~r~~~~~~~  176 (466)
                      ++.+....+.+|+..+..+..    -++.|.+.+     +...+.++-+...+...+. .++.+++++|++|++++-+..
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iL----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~   81 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTIL----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVI   81 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHH
Confidence            444555556666555555443    345555544     4467889888887777766 899999999999999988877


Q ss_pred             HHHHHHHHHHHHHhhh-----------------------------chhHHHHHHHHHHhhhccchh-hHHHHHhcccCCC
Q 012315          177 VWWSIATALTPVAAKL-----------------------------GLPFLLVVRVFMGIGEGVAMP-AMNNILSKWVPVA  226 (466)
Q Consensus       177 ~~~~~~~~~~~~~~~~-----------------------------~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~  226 (466)
                      ..+.....++++.-.+                             +.|...+..+...+-.....+ ....+++|.+..+
T Consensus        82 ~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~  161 (472)
T TIGR00769        82 SPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTID  161 (472)
T ss_pred             HHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            7777776666554100                             123333334444554444555 7789999999999


Q ss_pred             chhHHHHHHHHHHHhHHHHHhhhHHHhhc-------cc-Cch----HHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChH
Q 012315          227 ERSRSLALVYSGMYLGSVTGLAFSPFLIH-------RF-GWP----SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA  294 (466)
Q Consensus       227 ~r~~~~~~~~~~~~~g~~ig~~~~~~l~~-------~~-gw~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (466)
                      |-.|..++...+.++|.++++.+..++.+       .. .|.    ..+.+.++.+.+...+.... .+....++...+.
T Consensus       162 qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l-~~~~~~~~~~~~~  240 (472)
T TIGR00769       162 EAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWV-NRNVLTDPRSYNP  240 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCccccch
Confidence            99999999999999999999999988773       11 242    23333333333333333322 2222111111111


Q ss_pred             HHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHH
Q 012315          295 EKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL  341 (466)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (466)
                      +.   .++.++++-.-..+++.++++|.++.+.+...+++.....+.
T Consensus       241 ~~---~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve  284 (472)
T TIGR00769       241 AL---KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVE  284 (472)
T ss_pred             hh---ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            10   111111122223467788999988877777666655544443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.00  E-value=1.5e-08  Score=97.78  Aligned_cols=127  Identities=16%  Similarity=0.056  Sum_probs=90.0

Q ss_pred             HhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHH--hhhchhHHHHHH
Q 012315          125 IAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA--AKLGLPFLLVVR  201 (466)
Q Consensus       125 ~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  201 (466)
                      ...|. +.+++|.++.+.|++.+...++..++.++.|++.||+|+|+.+..+..+..+..+.....  ...+.+.+.++.
T Consensus       215 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (377)
T PRK11102        215 TAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGV  294 (377)
T ss_pred             HcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            33444 566789999999999999999999999999999999999999988887654443322211  111445555555


Q ss_pred             HHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHH-HHhHHHHHhhhHHH
Q 012315          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSG-MYLGSVTGLAFSPF  252 (466)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~ig~~~~~~  252 (466)
                      .+.+.+.+.........+.|..| ++++++.++.+.. ..+|..+++.+++.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        295 AAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45555555556666677788776 8899999987654 45777777776543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.97  E-value=2.4e-08  Score=95.49  Aligned_cols=154  Identities=14%  Similarity=0.097  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhhhhh-ccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHH
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILPMSA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (466)
                      +...++..++.....+..+....++.+ .+|.++....+.......+.+++.+++.++.+|+|+|+++.++.++.+++.+
T Consensus       238 ~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~  317 (467)
T COG2211         238 LLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYL  317 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            334444555555566666666666544 4677778888888888888888899999999999999999999999999999


Q ss_pred             HHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccC-------CCchhHHHHHHHHHHHhHHHHHhhhHHHhhccc
Q 012315          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-------VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF  257 (466)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~  257 (466)
                      +..+.+..+.+.+++..++.++|.+...+...++++|..+       .+.-|...+....+.-+|..++..+.|+..+..
T Consensus       318 ~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~  397 (467)
T COG2211         318 LLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI  397 (467)
T ss_pred             HHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9988876578888888999999999999999999999874       234477888899999999999999999888766


Q ss_pred             Cc
Q 012315          258 GW  259 (466)
Q Consensus       258 gw  259 (466)
                      |+
T Consensus       398 Gy  399 (467)
T COG2211         398 GY  399 (467)
T ss_pred             CC
Confidence            53

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.96  E-value=2.4e-08  Score=98.93  Aligned_cols=176  Identities=14%  Similarity=0.101  Sum_probs=128.3

Q ss_pred             HHHHHHHHHhhhhhhhhHHhHhhhh-hccCCCh----hhHHHHHHHHHHHHHHHHhhhhh----hhcc-cCcchHH--HH
Q 012315          107 VLCFSAFLLCNMDRVNMSIAILPMS-AEFNWNP----ATVGLIQSSFFWGYLLTQIAGGI----WADT-VGGKAVL--GF  174 (466)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~----~~~g~~~~~~~~~~~~~~~~~g~----l~dr-~g~r~~~--~~  174 (466)
                      ..+++..++...........++... ++.+.+.    -..+++.++..+..++.+++..+    +.|| .+.+...  .+
T Consensus       275 l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~  354 (475)
T TIGR00924       275 IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTL  354 (475)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Confidence            3333433333344444444455433 3333332    22678999999999988888664    4444 3334443  77


Q ss_pred             HHHHHHHHHHHHHHH----h---hhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHh
Q 012315          175 GVVWWSIATALTPVA----A---KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGL  247 (466)
Q Consensus       175 ~~~~~~~~~~~~~~~----~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~  247 (466)
                      |.++.+++.+..++.    .   ..|++++++..++.|+|.....|...+++.+..|++.||+++|++.....+|..+++
T Consensus       355 G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~  434 (475)
T TIGR00924       355 GMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGG  434 (475)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888777652    0   128899999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhcccCchHHHHHHhHHHHHHHHHHhhhcc
Q 012315          248 AFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH  282 (466)
Q Consensus       248 ~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~  282 (466)
                      .+.....+..+|...|...++..++..++.++..|
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       435 YLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99988777778988888888877776666555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.95  E-value=3.9e-12  Score=125.76  Aligned_cols=164  Identities=13%  Similarity=0.043  Sum_probs=111.9

Q ss_pred             hhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHH--H--Hhhhc---
Q 012315          121 VNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP--V--AAKLG---  193 (466)
Q Consensus       121 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~--~~~~~---  193 (466)
                      .......+.+.++.+.+..  -.......+...++.++...+.||+|||+.++.+..+++++.+..+  .  ....+   
T Consensus       270 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (451)
T PF00083_consen  270 NFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW  347 (451)
T ss_pred             ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3444556777788887766  2222334455556777778999999999999999988888877664  1  11100   


Q ss_pred             hhHHHHHHHHHHhhhc-cchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHH
Q 012315          194 LPFLLVVRVFMGIGEG-VAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV  272 (466)
Q Consensus       194 ~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~  272 (466)
                      -...++.-.+...+.+ ...+....+.+|.+|.+.|+++.++......++..+++.+...+.+..+-...+.+.++++++
T Consensus       348 ~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i  427 (451)
T PF00083_consen  348 SILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLI  427 (451)
T ss_pred             ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHH
Confidence            1111222222222222 334566788899999999999999999999999999999988888776634556666677777


Q ss_pred             HHHHHhhhcccCCC
Q 012315          273 WFTVWLSKAHSSPA  286 (466)
Q Consensus       273 ~~~~~~~~~~~~~~  286 (466)
                      ..+..+++.||...
T Consensus       428 ~~i~~~~~lpET~g  441 (451)
T PF00083_consen  428 AIIFVYFFLPETKG  441 (451)
T ss_pred             HHhheeEEEeeCCC
Confidence            77777777777654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.93  E-value=1.3e-08  Score=99.19  Aligned_cols=176  Identities=9%  Similarity=0.045  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCc---------chHHH
Q 012315          104 FIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG---------KAVLG  173 (466)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~---------r~~~~  173 (466)
                      ..++.+++..+........+...+|. +.+.+|++..+.|++.++..+...+..+++|.++||.-+         |-.-.
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            44667777788888888888888888 555689999999999999999999999999999999855         22333


Q ss_pred             HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhh-ccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHH
Q 012315          174 FGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGE-GVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF  252 (466)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~  252 (466)
                      ++....+++.+..++.+..+.+..+++. ..+.+. |...+..+.-..+.. +++-+..+|+.+....+...++|.+.+.
T Consensus       338 i~~~~~ai~l~~l~~~~~~~~~~a~~~l-~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~  415 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFTSDEHRLLAVILL-TIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGI  415 (466)
T ss_pred             HHHHHHHHHHHeeeecCCCcchHHHHHH-HHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheee
Confidence            5666666666666666632221222222 222222 333333333333434 5889999999999999999999999999


Q ss_pred             hhcc---cCchHHHHHHhHHHHHHHHHHhhhc
Q 012315          253 LIHR---FGWPSVFYSFGSLGTVWFTVWLSKA  281 (466)
Q Consensus       253 l~~~---~gw~~~~~~~~~~~~~~~~~~~~~~  281 (466)
                      +.+.   ..|+.+|++.+++.++..+...++-
T Consensus       416 ~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  416 IVTDNTREEWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             EeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence            9842   3699999999999888776655553

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.91  E-value=1e-06  Score=89.59  Aligned_cols=157  Identities=19%  Similarity=0.242  Sum_probs=128.1

Q ss_pred             HHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcc-cCcchHHHHHHHHHHHHHHHHHHHhhh------chhH
Q 012315          124 SIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWWSIATALTPVAAKL------GLPF  196 (466)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~  196 (466)
                      ..+..++.+.+|.+..+...+...+....-+..+++|+++|+ +|+++.+.++.++..++.++.++...+      ....
T Consensus         8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~   87 (654)
T TIGR00926         8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL   87 (654)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence            334455667789999999999999998899999999999998 699999999999999999888775311      1234


Q ss_pred             HHHHHHHHHhhhccchhhHHHHHhcccCCC---chhHHHHHHHHHHHhHHHHHhhhHHHhhccc-------CchHHHHHH
Q 012315          197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVA---ERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-------GWPSVFYSF  266 (466)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-------gw~~~~~~~  266 (466)
                      .+++..+..+|.|+.-+...+...|.++++   +|...+.++..+.++|+.+++++.+++.+..       +|...|.+.
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~  167 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP  167 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence            566778888999999999999999999754   3677888899999999999999999887443       699999998


Q ss_pred             hHHHHHHHHHHhhh
Q 012315          267 GSLGTVWFTVWLSK  280 (466)
Q Consensus       267 ~~~~~~~~~~~~~~  280 (466)
                      +++.++..++....
T Consensus       168 ~i~m~ia~lvf~~g  181 (654)
T TIGR00926       168 AILMILALIVFMAG  181 (654)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888777665543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.90  E-value=5.5e-08  Score=94.58  Aligned_cols=147  Identities=10%  Similarity=-0.010  Sum_probs=107.5

Q ss_pred             hhhhHHhHhhhhhcc--CCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHH
Q 012315          120 RVNMSIAILPMSAEF--NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFL  197 (466)
Q Consensus       120 ~~~~~~~~~~~~~~~--~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l  197 (466)
                      .......++.+.++.  +.+....+...+.+..+..++.++.+++.||+++|+++.++.++.++..++..+.+  +... 
T Consensus       248 e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~--~~~~-  324 (410)
T TIGR00885       248 QIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG--GHVG-  324 (410)
T ss_pred             HHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC--ChHH-
Confidence            333445555554443  44555556667777788899999999999999999999999988888888888776  5433 


Q ss_pred             HHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhccc------CchHHHHHHhHHHH
Q 012315          198 LVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF------GWPSVFYSFGSLGT  271 (466)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~------gw~~~~~~~~~~~~  271 (466)
                      ....++.|++.+..+|...++..+..+++.+....+ ..+. .+|+.+.|++.|++.|..      +.+..|++..++.+
T Consensus       325 ~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~-l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~  402 (410)
T TIGR00885       325 LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAG-LVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA  402 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence            556677788888889999999999997554333333 3333 399999999999999954      47777876444433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11462 putative transporter; Provisional

Probab=98.89  E-value=4.4e-08  Score=96.71  Aligned_cols=139  Identities=12%  Similarity=0.043  Sum_probs=93.8

Q ss_pred             hhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 012315          121 VNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVV  200 (466)
Q Consensus       121 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  200 (466)
                      ........++.++..-++...+.+.+.+.++.+++.+++++++||+|+|+.+..+..+..+..++..+.+..+.+.+++.
T Consensus       245 ~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (460)
T PRK11462        245 CVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVF  324 (460)
T ss_pred             HHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Confidence            33333444444444334455667778888999999999999999999999877655544444444434332133344455


Q ss_pred             HHHHHhhhccchhhHHHHHhcccC-------CCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCc
Q 012315          201 RVFMGIGEGVAMPAMNNILSKWVP-------VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (466)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw  259 (466)
                      -++.|++.+...+...++++|..+       .++-|..++.......+|..+++.++|++.+..|+
T Consensus       325 ~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        325 IFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            566788777767766778887765       33345556777788999999999999988876555

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.89  E-value=9.2e-08  Score=88.95  Aligned_cols=159  Identities=30%  Similarity=0.538  Sum_probs=127.0

Q ss_pred             HHhhhhhhhhHHhHhhhhhccCCCh--hhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhh
Q 012315          114 LLCNMDRVNMSIAILPMSAEFNWNP--ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK  191 (466)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~  191 (466)
                      +.............+.+..+++.+.  .+.++..+.+.++..++.++.|++.||+|||+.+..+.....++.++..+...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~   91 (338)
T COG0477          12 LLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN   91 (338)
T ss_pred             HHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc
Confidence            3333555666677778878877666  58999999999999999999999999999998888888766666666666661


Q ss_pred             hchhHHHHHHHHHHhhhccchhhHHHHHhcccCC-CchhHHHHHHHH-HHHhHHHHHhhhHHHhhcc--cCchHHHHHHh
Q 012315          192 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV-AERSRSLALVYS-GMYLGSVTGLAFSPFLIHR--FGWPSVFYSFG  267 (466)
Q Consensus       192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~ig~~~~~~l~~~--~gw~~~~~~~~  267 (466)
                      .+.+.+++.|++.|++.+...+...+++.+++|+ ++|+...+.... ...+|..+++.+++.+...  .+|+..|.+..
T Consensus        92 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (338)
T COG0477          92 VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAA  171 (338)
T ss_pred             chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            1378888999999999999999999999999987 688999999888 6888999999887776654  57998666655


Q ss_pred             HHHHH
Q 012315          268 SLGTV  272 (466)
Q Consensus       268 ~~~~~  272 (466)
                      .....
T Consensus       172 ~~~~~  176 (338)
T COG0477         172 LLGLL  176 (338)
T ss_pred             HHHHH
Confidence            55443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.88  E-value=2.2e-08  Score=93.55  Aligned_cols=148  Identities=14%  Similarity=0.084  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcc----cCcchHHH-HHHHHHH
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGKAVLG-FGVVWWS  180 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~~~-~~~~~~~  180 (466)
                      ++......+...+.+..-..+.+++.+++|++....+.+-.+..+...+.+++.|..+||    |||||.++ .+....+
T Consensus        34 li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~  113 (498)
T KOG0637|consen   34 LISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIA  113 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHH
Confidence            333333344444555555567788889999999999999999999999999999999997    78888766 5556667


Q ss_pred             HHHHHHHHHhhh---------------chhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhH-HHHHHHHHHHhHHH
Q 012315          181 IATALTPVAAKL---------------GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSR-SLALVYSGMYLGSV  244 (466)
Q Consensus       181 ~~~~~~~~~~~~---------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~  244 (466)
                      ++.++..++.+.               ....++++..+.-++....+..+-+++.|...++++.+ +++.+..+..+|..
T Consensus       114 ~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnv  193 (498)
T KOG0637|consen  114 VSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNV  193 (498)
T ss_pred             HHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcce
Confidence            777777776521               11334455555666667788899999999998777777 99999999999999


Q ss_pred             HHhhhHHHh
Q 012315          245 TGLAFSPFL  253 (466)
Q Consensus       245 ig~~~~~~l  253 (466)
                      +|..++++.
T Consensus       194 LGY~~g~y~  202 (498)
T KOG0637|consen  194 LGYALGSYL  202 (498)
T ss_pred             eeeeccccc
Confidence            999888744

>TIGR00788 fbt folate/biopterin transporter

Probab=98.87  E-value=2.4e-08  Score=98.76  Aligned_cols=128  Identities=15%  Similarity=0.162  Sum_probs=110.4

Q ss_pred             hhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHh-h-------hchhHHHHHHH
Q 012315          131 SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA-K-------LGLPFLLVVRV  202 (466)
Q Consensus       131 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~l~~~~~  202 (466)
                      .+.+|.++.++|++.....++.+++....+++.+|++.|+++.++.++.+++.+...+.. .       .+.+.++...+
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~  359 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI  359 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence            357899999999999999999999999999999999999999999999988775543110 0       13344555678


Q ss_pred             HHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC
Q 012315          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (466)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g  258 (466)
                      +.+++.+..+.....++.+..|++++|+..++++...++|..+++.+++.+.+..|
T Consensus       360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88999888889999999999999999999999999999999999999999998777

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.84  E-value=1.1e-07  Score=92.41  Aligned_cols=130  Identities=14%  Similarity=0.019  Sum_probs=96.9

Q ss_pred             hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHH-HHHHHHHHHHHHHhhhchhHHHHHHHHHHhhh
Q 012315          130 MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGV-VWWSIATALTPVAAKLGLPFLLVVRVFMGIGE  208 (466)
Q Consensus       130 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~  208 (466)
                      +.+.+|.++.+.+++.....++..+++++.+++.||++++....... ++..+...........+.+.+.+..++.|++.
T Consensus       234 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  313 (394)
T PRK11652        234 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGA  313 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            44558999999999999999999999999999999998433222222 22222222222221114566777788899999


Q ss_pred             ccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCch
Q 012315          209 GVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP  260 (466)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~  260 (466)
                      +...+...++..+.+| +++|.+.++.+....+|..+++.+++.+.....+.
T Consensus       314 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~  364 (394)
T PRK11652        314 GMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFS  364 (394)
T ss_pred             HHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence            9999999999999886 68899999999999999999999999887654333

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.82  E-value=1.1e-07  Score=87.79  Aligned_cols=166  Identities=14%  Similarity=0.163  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHhHhhhhhc-cCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHH
Q 012315          104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA  182 (466)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  182 (466)
                      +.+....++.|+...........++.+.++ .|.+..+.+...+.+..+.++|..++-++..|+...|.+.+..++..+.
T Consensus       236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill  315 (422)
T COG0738         236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILL  315 (422)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            344455556666666666777777776666 8999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHH
Q 012315          183 TALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV  262 (466)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~  262 (466)
                      ++..++.+  +.+. +...++.|+..+..+|...+...+..|  +.....|..-....+|+++-|++.|++.|..|-...
T Consensus       316 ~~~~~l~~--g~v~-~~~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~  390 (422)
T COG0738         316 LLAVALIG--GVVA-LYALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLT  390 (422)
T ss_pred             HHHHHHhc--ChHH-HHHHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhHHH
Confidence            88888887  6444 345677899999999999999999997  445555666667789999999999999999998887


Q ss_pred             HHHHhHHHHHHH
Q 012315          263 FYSFGSLGTVWF  274 (466)
Q Consensus       263 ~~~~~~~~~~~~  274 (466)
                      +.....+|.+..
T Consensus       391 ~~~~pllc~lyV  402 (422)
T COG0738         391 FLIVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHHHH
Confidence            775544544443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=9.6e-09  Score=94.10  Aligned_cols=171  Identities=19%  Similarity=0.138  Sum_probs=133.3

Q ss_pred             HHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccC--cchHHHHHHHHHHHHHH
Q 012315          108 LCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG--GKAVLGFGVVWWSIATA  184 (466)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~~~~  184 (466)
                      +...............-|.++. +.|.+..+..++|+..--..+.+.++..+.|.++||++  |-.....+++..+++..
T Consensus       274 ~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~  353 (464)
T KOG3764|consen  274 LIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSG  353 (464)
T ss_pred             hhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhc
Confidence            3333344444555566666776 56677866669999999999999999999999999999  43344466666677777


Q ss_pred             HHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCC------chhHHHHHHHHHHHhHHHHHhhhHHHhhcccC
Q 012315          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA------ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (466)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g  258 (466)
                      ...+++  ++..+++-++..|++.+..............+.+      -.|...++...++++|..+||.++|.+.+..|
T Consensus       354 ~iP~~~--~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iG  431 (464)
T KOG3764|consen  354 PIPFAT--SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIG  431 (464)
T ss_pred             hhHhhh--hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehh
Confidence            778888  8999998888888888877776666666665432      45788999999999999999999999999999


Q ss_pred             chHHHHHHhHHHHHHHHHHhhh
Q 012315          259 WPSVFYSFGSLGTVWFTVWLSK  280 (466)
Q Consensus       259 w~~~~~~~~~~~~~~~~~~~~~  280 (466)
                      ++|...+.++..++...+..++
T Consensus       432 F~wl~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  432 FEWLMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888766655443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.77  E-value=6e-06  Score=75.49  Aligned_cols=321  Identities=11%  Similarity=-0.030  Sum_probs=185.5

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhc-----ccCcchHHH-HH
Q 012315          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD-----TVGGKAVLG-FG  175 (466)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-----r~g~r~~~~-~~  175 (466)
                      ....+..+.+.+.+.+.-..... .+|.+.+.-|.|.++.+....++.=  ...-+++.++.|     |+||||.-+ -+
T Consensus        29 d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvvp~  105 (510)
T KOG3574|consen   29 DRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVVPC  105 (510)
T ss_pred             hhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceeeeh
Confidence            34456677778888888888887 8999988889998888776554432  223678899999     999998543 23


Q ss_pred             HHHHHHHHHHHHHHh---------hhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHH
Q 012315          176 VVWWSIATALTPVAA---------KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTG  246 (466)
Q Consensus       176 ~~~~~~~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig  246 (466)
                      ..+.+..+.+.+...         .++...+....++.-+..+....+.-.+.-....+++.|-+......+.+.|..++
T Consensus       106 q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~  185 (510)
T KOG3574|consen  106 QYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLG  185 (510)
T ss_pred             HHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhh
Confidence            333333333332221         01223333345666777777888888888888888888888888777777777777


Q ss_pred             hhhHHHhhc-------ccCch---------HHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCC
Q 012315          247 LAFSPFLIH-------RFGWP---------SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVK  310 (466)
Q Consensus       247 ~~~~~~l~~-------~~gw~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (466)
                      ..+--.+-.       ..+|.         ..+++.+.+.++.-.+..+..+|++.+..++.+....+           .
T Consensus       186 ~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e~~~~i~~-----------~  254 (510)
T KOG3574|consen  186 NVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEELELGIHE-----------S  254 (510)
T ss_pred             cceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhcCHHH-----------H
Confidence            655433322       01121         22334455555555555454444433211111100000           0


Q ss_pred             CcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------
Q 012315          311 TIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ----------------------------------------  350 (466)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------------------------------------  350 (466)
                      -.-++++++-|....+.......-.++.+-....+.-+.+                                        
T Consensus       255 yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~l  334 (510)
T KOG3574|consen  255 YKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFL  334 (510)
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHH
Confidence            1134566777777666666666666766666666666665                                        


Q ss_pred             --HHHHHHhHHHHHHHHH-HhcC-C---c-----hHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHH
Q 012315          351 --IMQSIGFLGPAFFLTQ-LSHV-D---S-----PAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAG  417 (466)
Q Consensus       351 --~~~~~~~~~~~~~~~~-~~~~-~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~  417 (466)
                        ...-++.......+.. .... .   .     ..+.+....+..++.-......++..+.+.+ ..-|+.+.+.|+..
T Consensus       335 ka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLs  414 (510)
T KOG3574|consen  335 KAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLS  414 (510)
T ss_pred             HhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHH
Confidence              1111111111111111 1111 1   0     1122222333344444444455555566664 68999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCc
Q 012315          418 VLAGVFGTAATGYILQHGS  436 (466)
Q Consensus       418 ~~g~~i~~~~~g~l~~~~g  436 (466)
                      ++|+---..+..++.|..+
T Consensus       415 nLGg~wp~tv~l~l~D~lt  433 (510)
T KOG3574|consen  415 NLGGNWPGTVALWLADGLT  433 (510)
T ss_pred             HhcCCcHHHHHHHhcccCc
Confidence            9999999999999988644

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.75  E-value=5e-08  Score=93.60  Aligned_cols=120  Identities=18%  Similarity=0.103  Sum_probs=90.1

Q ss_pred             hhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh--chhHHH
Q 012315          122 NMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL--GLPFLL  198 (466)
Q Consensus       122 ~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~  198 (466)
                      ......|. +.+.+|.++.+.+++.++..+...++.++.|++.||+|+|+.+..+......+..+..+....  +.+.++
T Consensus       243 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (366)
T TIGR00886       243 GVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFI  322 (366)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHH
Confidence            34444454 556789999999999999999999999999999999999988887777766666555543311  344444


Q ss_pred             HHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhH
Q 012315          199 VVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLG  242 (466)
Q Consensus       199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  242 (466)
                      +...+.+++.|...+...+.+.+..| +++|+++|+.+...++|
T Consensus       323 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       323 VLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            45555566666666677778888886 79999999998887776

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.74  E-value=1e-07  Score=82.61  Aligned_cols=152  Identities=16%  Similarity=0.178  Sum_probs=100.1

Q ss_pred             hhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 012315          122 NMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR  201 (466)
Q Consensus       122 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  201 (466)
                      ..+|..-++-+.+|+...++|.+.-......++...+.|.++||.|||+.-+.-++...++++- -.++  ++-.++++|
T Consensus        55 LQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT-KhSp--qYkVLmVGR  131 (454)
T KOG4332|consen   55 LQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT-KHSP--QYKVLMVGR  131 (454)
T ss_pred             hcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh-hcCC--ceEEEeehh
Confidence            3445555567788999999999999988889999999999999999999765554444444321 2334  788999999


Q ss_pred             HHHHhhhccchhhHHHH-HhcccCCCchhH---H----HHHH-HHHHHhHHHHHhhhHHHhhccc--CchHHHHHHhHHH
Q 012315          202 VFMGIGEGVAMPAMNNI-LSKWVPVAERSR---S----LALV-YSGMYLGSVTGLAFSPFLIHRF--GWPSVFYSFGSLG  270 (466)
Q Consensus       202 ~l~G~~~~~~~~~~~~~-~~~~~~~~~r~~---~----~~~~-~~~~~~g~~ig~~~~~~l~~~~--gw~~~~~~~~~~~  270 (466)
                      ++.|+..+..+++.-++ +.|..  ++|+.   .    ++-. ..++.+-.+++.+.+-.+.+.+  |--.+|-..+.+.
T Consensus       132 ~LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfL  209 (454)
T KOG4332|consen  132 VLGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFL  209 (454)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence            99999999988887665 44443  23332   1    1111 1334444555566666666654  4555665544444


Q ss_pred             HHHHHHHh
Q 012315          271 TVWFTVWL  278 (466)
Q Consensus       271 ~~~~~~~~  278 (466)
                      .+...+.+
T Consensus       210 aigmAvil  217 (454)
T KOG4332|consen  210 AIGMAVIL  217 (454)
T ss_pred             HHHHHHHH
Confidence            44444433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.70  E-value=5.1e-07  Score=90.11  Aligned_cols=139  Identities=14%  Similarity=0.061  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHHhhh----hhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-------chhHHHHHHHHHHhhhc
Q 012315          141 VGLIQSSFFWGYLLTQIAG----GIWADTVGGKAVLGFGVVWWSIATALTPVAAKL-------GLPFLLVVRVFMGIGEG  209 (466)
Q Consensus       141 ~g~~~~~~~~~~~~~~~~~----g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~l~G~~~~  209 (466)
                      .+++.++..+...+..++.    +++.||++..+.+.+|.++.+++.+..++....       +.++++...++.|+|..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5677777776666666666    666777777788999999999999888777521       25678888999999999


Q ss_pred             cchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc----------ccCchHHHHHHhHHHHHHHHHHhh
Q 012315          210 VAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH----------RFGWPSVFYSFGSLGTVWFTVWLS  279 (466)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~----------~~gw~~~~~~~~~~~~~~~~~~~~  279 (466)
                      ...|...+++.+..|++.||+++|++.....+|..++..+......          ..+..+.|...++.+++..++.+.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998888877777777666643211          123667887777776655544443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.69  E-value=6.7e-07  Score=85.37  Aligned_cols=144  Identities=15%  Similarity=0.130  Sum_probs=111.9

Q ss_pred             hhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------HHHHHHhHH
Q 012315          316 LILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ------------------------------------IMQSIGFLG  359 (466)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------------------------------~~~~~~~~~  359 (466)
                      +++.++....+.+...+..++...+.+++=-++++                                    .+...++.+
T Consensus       366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~  445 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLAC  445 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhH
Confidence            45667777666777777777777888888778887                                    222344445


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHH-HHHHHHHHHHHHHHhccCcc
Q 012315          360 PAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAG-VLAGVFGTAATGYILQHGSW  437 (466)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~-~~g~~i~~~~~g~l~~~~g~  437 (466)
                      ...=++.+....++|..+..-++-+...+..+....+++....| +.++++.|+..... .+|-.+|.+++|.+.+..|-
T Consensus       446 ~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~  525 (618)
T KOG3762|consen  446 NVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGA  525 (618)
T ss_pred             HHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehh
Confidence            55555566677788888888888888888889999899888776 68999999887665 88999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhc
Q 012315          438 DDVFKVSVGLYLVGTAVWNLFS  459 (466)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~  459 (466)
                      +..|.++++.+++..+.+..+.
T Consensus       526 ~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  526 RTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            9999988888777776666553

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.66  E-value=3e-05  Score=74.57  Aligned_cols=171  Identities=12%  Similarity=0.030  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhhhhhccC-CChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHH-
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFN-WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT-  183 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~-  183 (466)
                      ...+....++.....-++....+.+..+.. -+---.+...-.-.+..++.++..|.+.||..|.+++..+.+.--++. 
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~   83 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA   83 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence            345566777777888888888888666653 354555666666777888899999999999999988776655533222 


Q ss_pred             ---HHHH--HHhhhc----hhH---HHHHHHHHHhhhc-cchhhHHHHHhccc------CCCchhHHHHHHHHHHHhHHH
Q 012315          184 ---ALTP--VAAKLG----LPF---LLVVRVFMGIGEG-VAMPAMNNILSKWV------PVAERSRSLALVYSGMYLGSV  244 (466)
Q Consensus       184 ---~~~~--~~~~~~----~~~---l~~~~~l~G~~~~-~~~~~~~~~~~~~~------~~~~r~~~~~~~~~~~~~g~~  244 (466)
                         .+..  +.....    .+.   +++.-.+.|.-.- .......+.=.||.      +++...+.++...-.--+.-+
T Consensus        84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckl  163 (432)
T PF06963_consen   84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKL  163 (432)
T ss_pred             HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHH
Confidence               2211  111000    111   1222222222111 11112222223343      234566777777777778899


Q ss_pred             HHhhhHHHhhcccCchHHHHHHhHHHHHHHHH
Q 012315          245 TGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTV  276 (466)
Q Consensus       245 ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~  276 (466)
                      ++|++.|.+.+..+.+....+.++..++...+
T Consensus       164 laPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  164 LAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999889888888777777765543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.64  E-value=2.2e-06  Score=83.59  Aligned_cols=158  Identities=9%  Similarity=0.005  Sum_probs=102.5

Q ss_pred             hhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHH----Hh
Q 012315          116 CNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV----AA  190 (466)
Q Consensus       116 ~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~  190 (466)
                      .......+....|. +.+.+|.++.+.++.......+..++..+.+++.++..+++.......+..++..+...    .+
T Consensus       230 ~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~  309 (413)
T PRK15403        230 SYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWP  309 (413)
T ss_pred             HHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            33333445555676 45557999999999988888888888888888775555544433333333333332222    12


Q ss_pred             hhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHH
Q 012315          191 KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLG  270 (466)
Q Consensus       191 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~  270 (466)
                       .+++..++..++.++|.+...+......-.- ....+|++.++.+.....+..+++..++++.++ +-...|...+++.
T Consensus       310 -~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~  386 (413)
T PRK15403        310 -HVWLWSVLGTSLYAFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVA  386 (413)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHH
Confidence             1343456677888888888777776433211 233579999999999999999999999988765 5566666655555


Q ss_pred             HHHHHH
Q 012315          271 TVWFTV  276 (466)
Q Consensus       271 ~~~~~~  276 (466)
                      .+....
T Consensus       387 ~~~~~~  392 (413)
T PRK15403        387 GVIVVF  392 (413)
T ss_pred             HHHHHH
Confidence            444333

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.64  E-value=1.7e-06  Score=80.81  Aligned_cols=156  Identities=13%  Similarity=0.100  Sum_probs=126.4

Q ss_pred             hHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhc-ccCcchHHHHHHHHHHHHHHHHHHHh-hhchhHHHH
Q 012315          123 MSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD-TVGGKAVLGFGVVWWSIATALTPVAA-KLGLPFLLV  199 (466)
Q Consensus       123 ~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-r~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~  199 (466)
                      -..++.+ =-+-||++..+...+......|..++-...|++.. |.++++...+++....++..+..++. ..+.+.+..
T Consensus       227 QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~  306 (403)
T PF03209_consen  227 QDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRP  306 (403)
T ss_pred             hHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence            3344444 45668999999999999999999999999999887 67888888888888888876655543 126788999


Q ss_pred             HHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc----------cCchHHHHHHhHH
Q 012315          200 VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR----------FGWPSVFYSFGSL  269 (466)
Q Consensus       200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~----------~gw~~~~~~~~~~  269 (466)
                      .-++.|++.|.+.....+.+.+...+++.|..+|.+.....++..++..++|.+.|.          .+|..+|.+-++.
T Consensus       307 ~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~l  386 (403)
T PF03209_consen  307 GVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVL  386 (403)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999987652          2366677776666


Q ss_pred             HHHHHHHHh
Q 012315          270 GTVWFTVWL  278 (466)
Q Consensus       270 ~~~~~~~~~  278 (466)
                      .++..++..
T Consensus       387 l~~a~~ll~  395 (403)
T PF03209_consen  387 LLAALVLLG  395 (403)
T ss_pred             HHHHHHHHH
Confidence            655554443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=1.7e-05  Score=76.23  Aligned_cols=106  Identities=10%  Similarity=0.094  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccC
Q 012315          145 QSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP  224 (466)
Q Consensus       145 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~  224 (466)
                      .++......+++++.+.+.|++|.|+.++++........+.+.+.   |-+.++....+.|+|.+..+...-.++++..+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~---N~y~~yfssallG~Gaallw~GqG~ylt~~st  132 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP---NSYYLYFSSALLGFGAALLWTGQGGYLTSNST  132 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc---chHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence            667777788899999999999999999999999988887776655   56788889999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHhHHHHHhhhHHHh
Q 012315          225 VAERSRSLALVYSGMYLGSVTGLAFSPFL  253 (466)
Q Consensus       225 ~~~r~~~~~~~~~~~~~g~~ig~~~~~~l  253 (466)
                      ++.+.+..++.-.....+.++|..+...+
T Consensus       133 ~~tie~Nisi~Wai~~~~li~Ggi~l~~~  161 (461)
T KOG3098|consen  133 RETIERNISIFWAIGQSSLIIGGIILFIY  161 (461)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHhheee
Confidence            99999999998888888888886655443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.62  E-value=2.6e-07  Score=66.07  Aligned_cols=80  Identities=15%  Similarity=0.214  Sum_probs=74.0

Q ss_pred             hhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchh
Q 012315          116 CNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLP  195 (466)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (466)
                      .+..+..+.+.+|.+++|.++|..+.|++.+.+.+|+.++++...++.++.++++.+..+.+...+..+.+++.+  +.+
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~--~~~   81 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH--SFW   81 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh--chH
Confidence            466788999999999999999999999999999999999999999999998889999999999999999999998  665


Q ss_pred             HH
Q 012315          196 FL  197 (466)
Q Consensus       196 ~l  197 (466)
                      .+
T Consensus        82 ~w   83 (85)
T PF06779_consen   82 LW   83 (85)
T ss_pred             HH
Confidence            43

Note that many members are hypothetical proteins.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.59  E-value=1e-06  Score=87.53  Aligned_cols=140  Identities=14%  Similarity=0.044  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccCcchH-------HHHHHHHHHHHHHHHH-----HHh---hhchhHHHHHHHHHH
Q 012315          141 VGLIQSSFFWGYLLTQIAGGIWADTVGGKAV-------LGFGVVWWSIATALTP-----VAA---KLGLPFLLVVRVFMG  205 (466)
Q Consensus       141 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------~~~~~~~~~~~~~~~~-----~~~---~~~~~~l~~~~~l~G  205 (466)
                      .+++.+...+..++.+++.+++.||+++|+.       +.+|.++.+++.+..+     +..   ..+.+.++...++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            3566677777888899999999999999974       7778888777765332     221   125677778899999


Q ss_pred             hhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc----------ccCchHHHHHHhHHHHHHHH
Q 012315          206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH----------RFGWPSVFYSFGSLGTVWFT  275 (466)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~----------~~gw~~~~~~~~~~~~~~~~  275 (466)
                      +|.+...+...+++.+..|++.++.++|++....++|..+|..++.....          .-.+.+.|...++..+++.+
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v  470 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV  470 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888865521          11245667766766666555


Q ss_pred             HHhhh
Q 012315          276 VWLSK  280 (466)
Q Consensus       276 ~~~~~  280 (466)
                      +.+..
T Consensus       471 ~~~~~  475 (489)
T PRK10207        471 VMALM  475 (489)
T ss_pred             HHHHH
Confidence            55443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.57  E-value=4.1e-08  Score=91.74  Aligned_cols=178  Identities=11%  Similarity=0.018  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHH--------HHHH-HHHHHHHHHhhhhhhhcccCcchHHHH
Q 012315          104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGL--------IQSS-FFWGYLLTQIAGGIWADTVGGKAVLGF  174 (466)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~--------~~~~-~~~~~~~~~~~~g~l~dr~g~r~~~~~  174 (466)
                      +.++..+...|+.-...+..+.....+.+..|+.+.+...        ...+ ...+++.+-.+...++|++|||+..+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            5556666667776666666676777777777765443332        1111 122233355677788999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh--chhHHHH----HHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhh
Q 012315          175 GVVWWSIATALTPVAAKL--GLPFLLV----VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLA  248 (466)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~--~~~~l~~----~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~  248 (466)
                      |.+++++..+..+...++  +-..+++    ..++.-+|   -......+-+|.+|.+-|+..-|+.....-.|+++|..
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~  460 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF  460 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence            999999999888876620  1122222    23333333   23445567789999999999999999999999999999


Q ss_pred             hHHHhhc-----ccCchHHHHHHhHHHHHHHHHHhhhcccCC
Q 012315          249 FSPFLIH-----RFGWPSVFYSFGSLGTVWFTVWLSKAHSSP  285 (466)
Q Consensus       249 ~~~~l~~-----~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (466)
                      .-.++.+     ..|.+.++++.+.+.++..+..+++ ||+.
T Consensus       461 ~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~-pEtk  501 (538)
T KOG0252|consen  461 GFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI-PETK  501 (538)
T ss_pred             HhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe-eccc
Confidence            9999998     7789999999998888766655544 4443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.56  E-value=1.2e-06  Score=85.57  Aligned_cols=143  Identities=15%  Similarity=-0.020  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccCc-chHHHHHHHHHHHHHHHHHHHhhh--c-----------------hhHHHHHHH
Q 012315          143 LIQSSFFWGYLLTQIAGGIWADTVGG-KAVLGFGVVWWSIATALTPVAAKL--G-----------------LPFLLVVRV  202 (466)
Q Consensus       143 ~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~~~~~~~~~--~-----------------~~~l~~~~~  202 (466)
                      +....+.+...+.+++.-++.+|+|+ |++..++.++.+++.+...+.+..  +                 .+..++...
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA  388 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence            34445555666777888889999995 677789988888888877765410  0                 266677788


Q ss_pred             HHHhhhccchhhHHHHHhcccCC--CchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC--chHHHHHHhHHHHHHHHHHh
Q 012315          203 FMGIGEGVAMPAMNNILSKWVPV--AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG--WPSVFYSFGSLGTVWFTVWL  278 (466)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g--w~~~~~~~~~~~~~~~~~~~  278 (466)
                      +.|+..+..+..-++++++..++  ++.|..+|+++.+..+.+++..+..|.+.+.+|  -..++.+.++..++..+..+
T Consensus       389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~  468 (477)
T TIGR01301       389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL  468 (477)
T ss_pred             HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999984  566999999999999999999988888666555  56678888888888888888


Q ss_pred             hhcccCC
Q 012315          279 SKAHSSP  285 (466)
Q Consensus       279 ~~~~~~~  285 (466)
                      +..|+.+
T Consensus       469 ~~~~~~~  475 (477)
T TIGR01301       469 ILLPRPR  475 (477)
T ss_pred             HhCCCCC
Confidence            8777654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.47  E-value=8.6e-06  Score=66.61  Aligned_cols=109  Identities=13%  Similarity=0.172  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcc
Q 012315          143 LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW  222 (466)
Q Consensus       143 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~  222 (466)
                      .-.++......+.+++.+.+.+++|.|+.++++.+...+-.... +.+  +.+.++.+-++.|++.+..+.....++.+.
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~--~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYP--NSYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            34445555667777888889999999999999999888655444 445  778899999999999999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHHhHHHHHhhhHHHhh
Q 012315          223 VPVAERSRSLALVYSGMYLGSVTGLAFSPFLI  254 (466)
Q Consensus       223 ~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~  254 (466)
                      .+++++++..+++-.....+.++|.++.-.+.
T Consensus       118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  118 STEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888888887765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.44  E-value=1.4e-06  Score=61.97  Aligned_cols=70  Identities=13%  Similarity=0.156  Sum_probs=60.3

Q ss_pred             HHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHH
Q 012315          110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (466)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (466)
                      -..+++.+.....+.|.+|.+.++.|+|+.++|.+.++..+...++.+++|+++||+++++.+.....++
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            3445666666778888899999999999999999999999999999999999999999999887766544

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.43  E-value=6.9e-06  Score=82.53  Aligned_cols=179  Identities=16%  Similarity=0.093  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHH
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL  185 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  185 (466)
                      +..+.+..+......+....+.+.+.+..|.+... .+...+..+...++..+...+.||+|||+.++.+...+.++.++
T Consensus       297 ~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~  375 (513)
T KOG0254|consen  297 IIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVI  375 (513)
T ss_pred             HHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH
Confidence            33444444444444556666677788888876544 55555666677777788899999999999999999999999988


Q ss_pred             HHHHhhh-----------chhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhh
Q 012315          186 TPVAAKL-----------GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI  254 (466)
Q Consensus       186 ~~~~~~~-----------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~  254 (466)
                      ++.....           ....+....+.......+..+....+.+|.+|.+-|+++.++......+...+-......+.
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~  455 (513)
T KOG0254|consen  376 LAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFIT  455 (513)
T ss_pred             HHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7755311           01122222222233333345666789999999999999999977777666555444444444


Q ss_pred             cccCchHHHHHHhHHHHHHHH-HHhhhcccCC
Q 012315          255 HRFGWPSVFYSFGSLGTVWFT-VWLSKAHSSP  285 (466)
Q Consensus       255 ~~~gw~~~~~~~~~~~~~~~~-~~~~~~~~~~  285 (466)
                      +..++...|...+..+.+..+ ...+..||..
T Consensus       456 ~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk  487 (513)
T KOG0254|consen  456 EALGIGGTFGYFGGICLLSLIIFVFFFVPETK  487 (513)
T ss_pred             HhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence            443345566666666666555 5556666654

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.42  E-value=6.5e-06  Score=74.38  Aligned_cols=322  Identities=11%  Similarity=0.090  Sum_probs=192.6

Q ss_pred             hccCCChhhHH-HHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhcc
Q 012315          132 AEFNWNPATVG-LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGV  210 (466)
Q Consensus       132 ~~~~~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~  210 (466)
                      .+.+++..++. -+.-+..-.+.+.-.+.=.+.|-...|++++.-.+.......+..+.+  +.+.+=+.-++.|...+.
T Consensus        34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~--sV~~mQvlE~FyG~~tAa  111 (433)
T KOG3810|consen   34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGP--SVKAMQVLEFFYGPATAA  111 (433)
T ss_pred             CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcC--CchheeeehhhcChHHHH
Confidence            34566666653 233344445556666777799999999999988777777788888888  888888888888887654


Q ss_pred             chhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC--chHHHHHHhHHHHHHHHHHhhhcccCCCCC
Q 012315          211 AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG--WPSVFYSFGSLGTVWFTVWLSKAHSSPAED  288 (466)
Q Consensus       211 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (466)
                       ..+.++++-...+++++.++.|......-.|...|..++..++..-.  +...=.+.-....+..++. .+.|..++..
T Consensus       112 -EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A-~fLP~v~rSl  189 (433)
T KOG3810|consen  112 -EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLA-LFLPRVKRSL  189 (433)
T ss_pred             -HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHH-hhCCCCchhh
Confidence             56778888888999999999999999988999998888888776433  2222222222222222333 3334433211


Q ss_pred             CCCChHHHHHHhhcccCCCCCC-------------CcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 012315          289 PQLRPAEKKLIVSSCASKEPVK-------------TIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ-----  350 (466)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----  350 (466)
                      -..+.+++.. ..+.++..++.             ...+.+..+||.+..-.+...+...+++.+.++....-.+     
T Consensus       190 ~f~~~~~~~~-v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~  268 (433)
T KOG3810|consen  190 YFHRLEDKIS-VGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNP  268 (433)
T ss_pred             hhhcccccce-eccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCc
Confidence            1000000000 00000000000             0133455677776655555555555665555555544444     


Q ss_pred             -----------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhhhhhhh-
Q 012315          351 -----------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGL-  394 (466)
Q Consensus       351 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  394 (466)
                                                         .+..++.+.-+.++..+....+.|+..+..++.........+.. 
T Consensus       269 ~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~  348 (433)
T KOG3810|consen  269 ANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIAT  348 (433)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHH
Confidence                                               33444444455555566666777777777766655555444333 


Q ss_pred             hhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCc-----------chhHHHHHHHHHHHHHHHHHHhcCC
Q 012315          395 YSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-----------WDDVFKVSVGLYLVGTAVWNLFSTG  461 (466)
Q Consensus       395 ~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-----------~~~~~~~~~~~~~~~~~~~~~~~~~  461 (466)
                      ..+..+...+..|..+|+...+.-+-..+   +.-...|.-|           |..-|++.+++.+++..+.....++
T Consensus       349 ~~iA~nL~~e~~gLvFGiNTFvAl~lQsi---lT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~~  423 (433)
T KOG3810|consen  349 FQIARNLSSELFGLVFGINTFVALILQSI---LTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLMCRR  423 (433)
T ss_pred             HHHHHhhhhhhheeeeehHHHHHHHHHHh---heEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHHhhc
Confidence            34445566678899999888766554444   3333445311           4456788888888887665555433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.42  E-value=8.5e-06  Score=81.18  Aligned_cols=149  Identities=17%  Similarity=0.124  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHhHhhh-hhccCCCh---hhHHHHHHHHHHHHHHHHhhhhhhhcccCcch-HHHHHHHH
Q 012315          104 FIVVLCFSAFLLCNMDRVNMSIAILPM-SAEFNWNP---ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKA-VLGFGVVW  178 (466)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~---~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~  178 (466)
                      +.+....+..++.+...+....+.|.. ..-++-+.   .+.++......++..+++.+.|.+..++++-| .++++.++
T Consensus       310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~  389 (599)
T PF06609_consen  310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVL  389 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHH
Confidence            345555555566666556666666664 33455444   35788888899999999999999999887744 55677777


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHH
Q 012315          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF  252 (466)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~  252 (466)
                      +.++..+++.....|....+...++.|++.|...........-..|+++-|.+.|+....-.+|+.+|..+..-
T Consensus       390 ~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  390 MTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             HHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            77665555555433555667778899999998888888888888899999999999999999998888776543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.41  E-value=5.9e-06  Score=75.76  Aligned_cols=132  Identities=17%  Similarity=0.140  Sum_probs=114.5

Q ss_pred             hhHHhHhhh-hhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccC--cchHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q 012315          122 NMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG--GKAVLGFGVVWWSIATALTPVAAKLGLPFLL  198 (466)
Q Consensus       122 ~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (466)
                      .+....+.+ .+.+|.++.|.|-+.+...+...+.+....+..||..  -+-.+..++.++.-..++...+.  ....+.
T Consensus       279 ~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~--~~~~l~  356 (451)
T KOG2615|consen  279 GLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLAR--TPVVLY  356 (451)
T ss_pred             HHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccc--cchhhh
Confidence            333334444 4679999999999999999999999999999999988  77777888888877778888887  778888


Q ss_pred             HHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc
Q 012315          199 VVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH  255 (466)
Q Consensus       199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~  255 (466)
                      .+..+..+..+...+....++....|+++||..+|+......++-++||+++|.+..
T Consensus       357 ~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  357 LGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            888999998888889999999999999999999999999999999999999987765

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.39  E-value=0.00085  Score=65.91  Aligned_cols=155  Identities=8%  Similarity=-0.019  Sum_probs=98.2

Q ss_pred             CchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHH-HHHHHHhhhhhhhcccCcchHHHHHHHH
Q 012315          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (466)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~  178 (466)
                      +..+..+..+.+.+++..+.....-..-..+.-. ..+++.+..+=....+ ..++...+..++++++++.+++-+....
T Consensus        20 ~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt-~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~   98 (491)
T PF03219_consen   20 RSELKKFLPLALMFFFILFNYTILRDLKDTLVVT-AQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIP   98 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEe-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3455566666666666665555443332221111 1155666666554444 4455678899999999999988777666


Q ss_pred             HHHHHHHHHHHhh-------h----------------------chhHHHHHHHHHHhhhccchh-hHHHHHhcccCCCch
Q 012315          179 WSIATALTPVAAK-------L----------------------GLPFLLVVRVFMGIGEGVAMP-AMNNILSKWVPVAER  228 (466)
Q Consensus       179 ~~~~~~~~~~~~~-------~----------------------~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r  228 (466)
                      +.....++++.-.       +                      +.|...+.-+..-+-.....+ .-..+.+|.++.+|-
T Consensus        99 F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eA  178 (491)
T PF03219_consen   99 FLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEA  178 (491)
T ss_pred             HHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            6665555544310       0                      112222333333332233333 458899999999999


Q ss_pred             hHHHHHHHHHHHhHHHHHhhhHHHhhc
Q 012315          229 SRSLALVYSGMYLGSVTGLAFSPFLIH  255 (466)
Q Consensus       229 ~~~~~~~~~~~~~g~~ig~~~~~~l~~  255 (466)
                      .+..++...+.++|.+++..+..++.+
T Consensus       179 KRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  179 KRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888877

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.38  E-value=8.3e-06  Score=82.29  Aligned_cols=159  Identities=13%  Similarity=-0.000  Sum_probs=110.0

Q ss_pred             HhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHH
Q 012315          127 ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGL-PFLLVVRVFMG  205 (466)
Q Consensus       127 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~l~G  205 (466)
                      ++.....+|.+....-.+..   ..........+...|++|||.....+..+..++.++.++...... +...+...+..
T Consensus       341 l~~~~~~lg~~~~~~~~~~~---~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (521)
T KOG0255|consen  341 LSLNVSGLGGNIYLNFTLSG---LVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGK  417 (521)
T ss_pred             hhhhhhhcCchHHHHHHHHH---HHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence            44455556655443333333   355555566689999999999999999999999999988873222 13455555555


Q ss_pred             hhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhhhcccCC
Q 012315          206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP  285 (466)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (466)
                      ++.+..+.....+.+|.+|...|..+.+..+....+|.+++|.+...... ......+.+.+....+...+...+.|+..
T Consensus       418 ~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  418 FFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccC
Confidence            66666677779999999999999999999999999999999998865544 22222322345555555555556667665


Q ss_pred             CCCC
Q 012315          286 AEDP  289 (466)
Q Consensus       286 ~~~~  289 (466)
                      ....
T Consensus       497 ~~~l  500 (521)
T KOG0255|consen  497 GKPL  500 (521)
T ss_pred             CCCC
Confidence            4443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.37  E-value=2.2e-06  Score=84.09  Aligned_cols=162  Identities=14%  Similarity=0.122  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhhhhhc-cCCChhhHHHHHHHHHHHHHHHHhhhhhhhcc----cCcchHHHHHHHHHH
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGKAVLGFGVVWWS  180 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~~~~~~~~~~  180 (466)
                      ++...++.++.....+.+...+|.+.++ .|.+..+.+.+...+.++.+++.+++|.++||    ..+|........+..
T Consensus       275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~  354 (495)
T KOG2533|consen  275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA  354 (495)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            4566667777777788888889997777 66999999999999999999999999999999    566666665554444


Q ss_pred             HHH-HHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchh-HHHHHHHHHHHhHHHHH-hhhHHHhhccc
Q 012315          181 IAT-ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERS-RSLALVYSGMYLGSVTG-LAFSPFLIHRF  257 (466)
Q Consensus       181 ~~~-~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~g~~ig-~~~~~~l~~~~  257 (466)
                      +.. +......  +........+....+.....+......++...++.|. ...+.+..+.+.+..++ +...+.....+
T Consensus       355 ~~g~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y  432 (495)
T KOG2533|consen  355 IIGAISLLAAA--VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRY  432 (495)
T ss_pred             HHHHHHHHhhc--cchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcch
Confidence            333 3333333  3444443344444455556677777777777554433 33444445555544444 44444555567


Q ss_pred             CchHHHHHHhHH
Q 012315          258 GWPSVFYSFGSL  269 (466)
Q Consensus       258 gw~~~~~~~~~~  269 (466)
                      +|...|......
T Consensus       433 ~~~~~f~~~~~~  444 (495)
T KOG2533|consen  433 GWGAVFYMLVAA  444 (495)
T ss_pred             hhhhHHHHHHHH
Confidence            888888444333

>PTZ00207 hypothetical protein; Provisional

Probab=98.23  E-value=1.4e-05  Score=80.11  Aligned_cols=171  Identities=7%  Similarity=-0.056  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhhhhhcc-CC-ChhhHHH-HHHHHHHHHHHHHhhhhhhhcc---------cCcchHHH
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEF-NW-NPATVGL-IQSSFFWGYLLTQIAGGIWADT---------VGGKAVLG  173 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-s~~~~g~-~~~~~~~~~~~~~~~~g~l~dr---------~g~r~~~~  173 (466)
                      ++++++.+++.......+..-+.++.+.+ |. ...+... +.++..++..+|.+..|.+...         +.|--.+.
T Consensus       355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~  434 (591)
T PTZ00207        355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALF  434 (591)
T ss_pred             HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHH
Confidence            44555555554444444444466677777 65 2232222 7888888888888888887721         21122233


Q ss_pred             HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHH-hhhHHH
Q 012315          174 FGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTG-LAFSPF  252 (466)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig-~~~~~~  252 (466)
                      +..+ +.++.+++++..  ....+++.-++.|++.|..++.....++|+|. |+-|+-..+......+|..+- -.+.|.
T Consensus       435 ~~~~-~~~~~lll~~~~--p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~  510 (591)
T PTZ00207        435 IPSV-CIITMLTLFLTL--PKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGE  510 (591)
T ss_pred             HHHH-HHHHHHHHHHHC--CccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHH
Confidence            4444 666666666664  33678999999999999999999999999998 999999999999999998776 567777


Q ss_pred             hhccc----------C---chHHHHHHhHHHHHHHHHHhhh
Q 012315          253 LIHRF----------G---WPSVFYSFGSLGTVWFTVWLSK  280 (466)
Q Consensus       253 l~~~~----------g---w~~~~~~~~~~~~~~~~~~~~~  280 (466)
                      +.|+.          |   ++.+|++.+++++...++...+
T Consensus       511 ~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l  551 (591)
T PTZ00207        511 WYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYV  551 (591)
T ss_pred             HHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence            76531          2   7889999988888777665443

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.21  E-value=0.0024  Score=64.21  Aligned_cols=177  Identities=14%  Similarity=0.131  Sum_probs=130.4

Q ss_pred             hHHHHHHHHHHHHHhhhhh-hhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhccc-CcchHHHHHHHHH
Q 012315          102 RWFIVVLCFSAFLLCNMDR-VNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWW  179 (466)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~  179 (466)
                      .|+..........+.-+.. ......+.++.+++|.+...+.-....+.-...+..+.+++++|-| ||-+++.++.++.
T Consensus        35 ~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~  114 (571)
T KOG1237|consen   35 GWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLIS  114 (571)
T ss_pred             hhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4444433333333333332 2345667788899999888888899999989999999999999985 8889999999988


Q ss_pred             HHHHHHHHHHhh-------------h-------c---hhHHHHHHHHHHhhhccchhhHHHHHhcccCC----C--chhH
Q 012315          180 SIATALTPVAAK-------------L-------G---LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV----A--ERSR  230 (466)
Q Consensus       180 ~~~~~~~~~~~~-------------~-------~---~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~----~--~r~~  230 (466)
                      .++..+..+...             .       +   ...++.+.-+..+|.|+.-+...++-+|-++.    +  ++..
T Consensus       115 ~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~  194 (571)
T KOG1237|consen  115 LLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPS  194 (571)
T ss_pred             HHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCccc
Confidence            888655543320             0       0   12556667777889999999999999999982    2  2236


Q ss_pred             HHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHh
Q 012315          231 SLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL  278 (466)
Q Consensus       231 ~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  278 (466)
                      .+.++....++|..++..+..+.-++.||...|.+..+...+..++.+
T Consensus       195 fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  195 FFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHH
Confidence            778889999999999999888887889999999888777666555443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.19  E-value=4.5e-05  Score=75.07  Aligned_cols=137  Identities=14%  Similarity=0.171  Sum_probs=89.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------HHHHHHhHHHHH
Q 012315          321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQ--------------------------------------IMQSIGFLGPAF  362 (466)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------------------------------~~~~~~~~~~~~  362 (466)
                      +.++.+....+...+.+++...++|.|+++                                      .....+.+...+
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~l   88 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAI   88 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence            456666667777777888888888888876                                      122333333333


Q ss_pred             HHHHHhcCC-chHHHHHHHHHHhhhhhhhhhhhhhhhcccCcc---chhhHHHHHHHHHHHHHHHHHHHHHHHhccCcch
Q 012315          363 FLTQLSHVD-SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPR---YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWD  438 (466)
Q Consensus       363 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~  438 (466)
                      ....+.... ..........+...+.+...+...++..+.+|+   +|+++.++.+...++|+.++|.+.|++.+..||+
T Consensus        89 g~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~  168 (493)
T PRK15462         89 GHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWA  168 (493)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChH
Confidence            322222211 112122222222233334445556667777763   6999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 012315          439 DVFKVSVGLYLVGTAVWNL  457 (466)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~  457 (466)
                      ..|.+.++.++++.+.+..
T Consensus       169 ~~F~iaaigm~l~li~~~~  187 (493)
T PRK15462        169 MGFGLAAVGMIAGLVIFLC  187 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999887777666666554

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.13  E-value=5.9e-05  Score=60.84  Aligned_cols=89  Identities=20%  Similarity=0.210  Sum_probs=69.2

Q ss_pred             CchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHH
Q 012315          371 DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYL  449 (466)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~  449 (466)
                      ++.+.......+.+...+...+.......+..| ++|+++.++.+....+|..++|.+.+.+.+..+|+..+.+.+.+.+
T Consensus        49 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (141)
T TIGR00880        49 SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL  128 (141)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHH
Confidence            445555555566666666666777777777776 6899999999999999999999999999999999988888877777


Q ss_pred             HHHHHHHHhc
Q 012315          450 VGTAVWNLFS  459 (466)
Q Consensus       450 ~~~~~~~~~~  459 (466)
                      ++.+....+.
T Consensus       129 ~~~~~~~~~~  138 (141)
T TIGR00880       129 AAFILLAFLL  138 (141)
T ss_pred             HHHHHHhhcC
Confidence            6666555543

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.09  E-value=0.011  Score=56.79  Aligned_cols=237  Identities=7%  Similarity=-0.032  Sum_probs=141.0

Q ss_pred             CCCCchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhcc---CCChhhHHHHHHHHHH-HHHHHHhhhhhhhcccCcchHH
Q 012315           97 EEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEF---NWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVGGKAVL  172 (466)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~  172 (466)
                      +..+..+..++.+.+.+++..+..+..-    .+.+.+   ..++..+.++-+..-+ +..+..++.+++.+++.+.+++
T Consensus        20 pi~r~E~~kflpl~Ll~f~I~~ny~~lR----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF   95 (509)
T COG3202          20 PIRRYELKKFLPLALLFFCILFNYNLLR----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVF   95 (509)
T ss_pred             eccHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHH
Confidence            3445566667777777766666555444    344444   3456777888887777 6778889999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHhh-------hc-----------------------hhHHHHHHHHHHhhhccchh-hHHHHHhc
Q 012315          173 GFGVVWWSIATALTPVAAK-------LG-----------------------LPFLLVVRVFMGIGEGVAMP-AMNNILSK  221 (466)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~-------~~-----------------------~~~l~~~~~l~G~~~~~~~~-~~~~~~~~  221 (466)
                      -..+..+....+++++.-.       ++                       .|...+..++.-+-.....+ .-....+|
T Consensus        96 ~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNe  175 (509)
T COG3202          96 YIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANE  175 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888777777777765421       01                       13333333333332233333 45778889


Q ss_pred             ccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC----------chHHHHHHhHHHHHHHHHHhhhcccCCCCCCCC
Q 012315          222 WVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG----------WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL  291 (466)
Q Consensus       222 ~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g----------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (466)
                      ....+|-.|..++++.+.+++..++..+..++..+-.          .+..+.+.++.++++..+..+..+...+.+...
T Consensus       176 itt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~  255 (509)
T COG3202         176 ITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFY  255 (509)
T ss_pred             hhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchh
Confidence            9988999999999999999999999999988876321          233344444444443333333322222111111


Q ss_pred             ChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHH
Q 012315          292 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL  340 (466)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (466)
                         .....+++.+..+-.-..+++.++++|-++.+.+...+++.+...+
T Consensus       256 ---~~~~~kk~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLv  301 (509)
T COG3202         256 ---LRAKKKKKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLV  301 (509)
T ss_pred             ---HHHhcccccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence               0000000011111111235667788888887777776666654433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.08  E-value=7.5e-05  Score=72.86  Aligned_cols=124  Identities=17%  Similarity=0.227  Sum_probs=110.4

Q ss_pred             hhhhccCCChhhHHHHHHHHHHHHHHHHhhhh-hhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhh
Q 012315          129 PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGG-IWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIG  207 (466)
Q Consensus       129 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g-~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~  207 (466)
                      ++...++++..+.+.+.+...+...+++++.. .+...+|-|+++..|+..-.+...+.++++  +.|+++...++.++.
T Consensus       267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~--~~w~~~~~~v~~~~~  344 (463)
T KOG2816|consen  267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT--ETWMMFAAGVVVALA  344 (463)
T ss_pred             EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc--cchhhhHHHHHHHhh
Confidence            35667899999999999988888888888887 778889999999999999999999999999  899999888887765


Q ss_pred             hccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc
Q 012315          208 EGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH  255 (466)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~  255 (466)
                       ....+...+.++.+.+++++|+++++......+...++|.+-+.+..
T Consensus       345 -~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  345 -GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             -cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence             56789999999999999999999999999999999999999887654

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.95  E-value=8.7e-05  Score=71.32  Aligned_cols=111  Identities=17%  Similarity=0.283  Sum_probs=90.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhh-c------hhHHHHHHHHHHhhhccchhhHHHHHhcccCCC---chhHHHHHHHHHH
Q 012315          170 AVLGFGVVWWSIATALTPVAAKL-G------LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA---ERSRSLALVYSGM  239 (466)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~-~------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~  239 (466)
                      |++.++.+++.+|.++..++..+ .      .+.++++..+.++|.|+.-+...++.+|.++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            57788999999999886655421 2      257888999999999999999999999999865   4677888899999


Q ss_pred             HhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhhh
Q 012315          240 YLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSK  280 (466)
Q Consensus       240 ~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  280 (466)
                      ++|..+++.+.+++-+++||...|.+.++..++..+..+.-
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999888877766655443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.77  E-value=0.0064  Score=58.54  Aligned_cols=145  Identities=8%  Similarity=-0.038  Sum_probs=84.1

Q ss_pred             HHHHHHHHHhhhhhhhhHHhHhhhhhc--cCCChhhHHHHHHHHHHHHHHHHhhhhhhhc-----ccCcchHHHHHH-HH
Q 012315          107 VLCFSAFLLCNMDRVNMSIAILPMSAE--FNWNPATVGLIQSSFFWGYLLTQIAGGIWAD-----TVGGKAVLGFGV-VW  178 (466)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-----r~g~r~~~~~~~-~~  178 (466)
                      .++.+.+++.+.-.......+|.+.++  -+.|.+|.|...-+.. .+- .-+++.++.|     |+||||.-++-. .+
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~-PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l   80 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASY-PFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYL   80 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeec-hhH-HHHhhhhhhhhhcccccCCcchhhhHHHHH
Confidence            355667778887776655567888777  6888888876543221 111 2345555554     789998654322 33


Q ss_pred             HHHHHHHHHHHh---------------hh-----c--hhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHH
Q 012315          179 WSIATALTPVAA---------------KL-----G--LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVY  236 (466)
Q Consensus       179 ~~~~~~~~~~~~---------------~~-----~--~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  236 (466)
                      .++.++..+...               ..     +  ...+....++.=+..+....+.-.+.-....+++++.|.....
T Consensus        81 ~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqt  160 (544)
T PF13000_consen   81 SGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQT  160 (544)
T ss_pred             HHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHH
Confidence            333332222111               00     0  1122233334444456666677777777777888888888777


Q ss_pred             HHHHhHHHHHhhhHHHh
Q 012315          237 SGMYLGSVTGLAFSPFL  253 (466)
Q Consensus       237 ~~~~~g~~ig~~~~~~l  253 (466)
                      .+.++|..++..+--.+
T Consensus       161 vG~~~Gyfls~tvFlal  177 (544)
T PF13000_consen  161 VGQTAGYFLSFTVFLAL  177 (544)
T ss_pred             hHhhhhHHHHHHHHHhh
Confidence            77777777776655444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.67  E-value=0.0026  Score=56.94  Aligned_cols=282  Identities=12%  Similarity=0.103  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHh
Q 012315          141 VGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILS  220 (466)
Q Consensus       141 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~  220 (466)
                      .|.+.-.-.+...+..+....+.||+..-.=..+..++.+.+.++.++++  +.++-+.+..+..++.|.......++-+
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~--s~~~sL~GV~~aSissGlGEiTFL~lss  141 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSN--SVPMSLLGVVFASISSGLGEITFLALSS  141 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEecc--chhHHHhhhhhhhhcCCcceeehhhhhc
Confidence            45555566666777777888889987655555566677788888888998  8999999999999988876655554443


Q ss_pred             cccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc--cCchHHHHHHhHHHHHHHHHHhhhcccCCCCC-CCCChHHHH
Q 012315          221 KWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED-PQLRPAEKK  297 (466)
Q Consensus       221 ~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~--~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  297 (466)
                      . ++    ....+-++.+.+.++++|..--..+.+.  ..-+...++...+.++.+...++..++++... +..++....
T Consensus       142 ~-Y~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~ptl~~~~~~  216 (409)
T KOG3880|consen  142 R-YP----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYSPTLQPSTEI  216 (409)
T ss_pred             c-CC----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccccCCCcCcccee
Confidence            3 33    2244456666666667776665556553  45677888777777766666665555443322 111111100


Q ss_pred             ----HHhhcccCCC--CCCCcchhhhhc-ChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------------------
Q 012315          298 ----LIVSSCASKE--PVKTIPWGLILS-KPPVWALIVSHFCHNWGTFILLT-WMPTYYNQ-------------------  350 (466)
Q Consensus       298 ----~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~-------------------  350 (466)
                          ....+..+++  +++....++-++ -+.+...++-.+...+..+.++. ..+..+-+                   
T Consensus       217 ~~~~~~~~~a~e~~sv~s~~~~~~e~~~~i~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqYRwyqvl  296 (409)
T KOG3880|consen  217 IPSQYLPFEAAEEKSVPSRRLGLKETLKRIKPLLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQYRWYQVL  296 (409)
T ss_pred             ccCCCCcccccccccCchhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcchhhhee
Confidence                0000111111  222223333222 11122233323333333332221 11111110                   


Q ss_pred             ---------------------HHHHHHhH--HHHHHHHHHhcCCchHHHHHHHHHHhhhhhhhh-hhhhhhhcccCccch
Q 012315          351 ---------------------IMQSIGFL--GPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQ-SGLYSNHQDIAPRYS  406 (466)
Q Consensus       351 ---------------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~  406 (466)
                                           .+...=++  +..+.=....+.++.+.+.+..+.-|..++..+ .....+..+..|++|
T Consensus       297 YQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~r  376 (409)
T KOG3880|consen  297 YQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVR  376 (409)
T ss_pred             eeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHH
Confidence                                 11111111  112222334566777777777666665555554 455566677889999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Q 012315          407 GVLLGLSNTAGVLAGVFGTAATG  429 (466)
Q Consensus       407 g~~~g~~~~~~~~g~~i~~~~~g  429 (466)
                      -.+++...+.-.+|..++..+.=
T Consensus       377 Efamsavs~sDS~Gi~lA~~lal  399 (409)
T KOG3880|consen  377 EFAMSAVSISDSIGIFLAGLLAL  399 (409)
T ss_pred             HHhHhhheecchhhHHHHHHHhc
Confidence            99999888877777776665543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.62  E-value=0.0011  Score=62.90  Aligned_cols=114  Identities=14%  Similarity=0.108  Sum_probs=81.6

Q ss_pred             cCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHH--HHHH---HHHHHHhhhchhHHHHHHHHHHhhh
Q 012315          134 FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW--SIAT---ALTPVAAKLGLPFLLVVRVFMGIGE  208 (466)
Q Consensus       134 ~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~--~~~~---~~~~~~~~~~~~~l~~~~~l~G~~~  208 (466)
                      +.-...+.-+...++.+|..++.--...+  |+  |++.+.+.+-.  .+..   ...-+.+  +.|.+++.-+..|+..
T Consensus       276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fip--si~ivf~lif~eGLlG  349 (402)
T PF02487_consen  276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIP--SIWIVFVLIFYEGLLG  349 (402)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHhh
Confidence            33345677888888888887775443222  33  33333332222  1111   2223345  7888888899999999


Q ss_pred             ccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHh
Q 012315          209 GVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL  253 (466)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l  253 (466)
                      |..+......+.+-.++++|..++|....+-++|..++.+++-++
T Consensus       350 Ga~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  350 GASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998887655

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.62  E-value=0.0014  Score=63.02  Aligned_cols=144  Identities=17%  Similarity=0.135  Sum_probs=109.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhcccCcc-------hHHHHHHHHHHHHHHHHHHH-------h-hhchhHHHHHHHH
Q 012315          139 ATVGLIQSSFFWGYLLTQIAGGIWADTVGGK-------AVLGFGVVWWSIATALTPVA-------A-KLGLPFLLVVRVF  203 (466)
Q Consensus       139 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-------~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~l~~~~~l  203 (466)
                      -..++..+...+..++.+++..++-.|.+++       .-+.+++.+++.+.++....       . ..+.++++...++
T Consensus       324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l  403 (498)
T COG3104         324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL  403 (498)
T ss_pred             cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence            4457888999999999999988888885443       23456677777776665544       1 1257888899999


Q ss_pred             HHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHH------hhcccCchHHHHHHhHHHHHHHHHH
Q 012315          204 MGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF------LIHRFGWPSVFYSFGSLGTVWFTVW  277 (466)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~------l~~~~gw~~~~~~~~~~~~~~~~~~  277 (466)
                      +++|.=+..|...+++.+..|+.-.+.+++.+-.....|..++..+++.      ..+.......|+..+...++..+..
T Consensus       404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~  483 (498)
T COG3104         404 QSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILL  483 (498)
T ss_pred             HHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888888888887773      2333445667777777777766655


Q ss_pred             hhhcc
Q 012315          278 LSKAH  282 (466)
Q Consensus       278 ~~~~~  282 (466)
                      ....|
T Consensus       484 ~~~~~  488 (498)
T COG3104         484 LLLSP  488 (498)
T ss_pred             HHhhH
Confidence            54433

>PRK03612 spermidine synthase; Provisional

Probab=97.60  E-value=0.0073  Score=60.37  Aligned_cols=158  Identities=16%  Similarity=0.163  Sum_probs=92.3

Q ss_pred             hhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHH-HHHHHHH-HHHHHHHHHh--
Q 012315          116 CNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG-FGVVWWS-IATALTPVAA--  190 (466)
Q Consensus       116 ~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~-~~~~~~~~~~--  190 (466)
                      .++....+-..... +.-.+|-+..+.+.+.+++..|..+|+.+++++.++.-++...+ ++..+.+ ++..+.....  
T Consensus        26 sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~  105 (521)
T PRK03612         26 CAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAF  105 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333 44456888999999999999999999999998874432222211 1111111 1111111111  


Q ss_pred             hhch-hHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhh-cccCchHHHHHHhH
Q 012315          191 KLGL-PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI-HRFGWPSVFYSFGS  268 (466)
Q Consensus       191 ~~~~-~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~-~~~gw~~~~~~~~~  268 (466)
                      .... ..++...++.++..|+..|....+..+.. .++-|+..|.......+|+++|.++.+++. ..+|-....++.+.
T Consensus       106 ~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~  184 (521)
T PRK03612        106 QGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGS  184 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            0011 12233345667777877777777665533 234577889999999999999999988655 46775544444555


Q ss_pred             HHHHHH
Q 012315          269 LGTVWF  274 (466)
Q Consensus       269 ~~~~~~  274 (466)
                      +.+++.
T Consensus       185 l~~~~a  190 (521)
T PRK03612        185 LNLLAA  190 (521)
T ss_pred             HHHHHH
Confidence            544443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.57  E-value=0.00018  Score=67.84  Aligned_cols=180  Identities=11%  Similarity=-0.060  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCc-chHHHHHHHHHHHHH-
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG-KAVLGFGVVWWSIAT-  183 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~-  183 (466)
                      +.+..+++.......+.....+......-|.+....|++.....++.++++.+.|.+.||.+. |..+++......++. 
T Consensus       268 F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~  347 (480)
T KOG2563|consen  268 FIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTL  347 (480)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            444444444444445555555555555667777889999999999999999999999999865 555555555555553 


Q ss_pred             HHHHHHhh-hchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC----
Q 012315          184 ALTPVAAK-LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG----  258 (466)
Q Consensus       184 ~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g----  258 (466)
                      .+..+... .+.+.++..-.+.|++.....|...-+-.|..-+..-+.-.|+.+...++-+++-..+-+...+..+    
T Consensus       348 ~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~  427 (480)
T KOG2563|consen  348 MLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGN  427 (480)
T ss_pred             HHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCC
Confidence            22222221 1345566667778888888889888888887656666777888888777777777777777777665    


Q ss_pred             chHHHHHHhHHHHHHHHHHhhhcccCC
Q 012315          259 WPSVFYSFGSLGTVWFTVWLSKAHSSP  285 (466)
Q Consensus       259 w~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (466)
                      |...-+......++..++..+++|+.+
T Consensus       428 ~~~~~i~~~~~~~l~~~lva~~r~~y~  454 (480)
T KOG2563|consen  428 TFPANIFLTVSALLGAILVAFFRPDYR  454 (480)
T ss_pred             CccchhHhHHHHHHHHHHHhhhhhhHH
Confidence            433334444444444555555555433

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.36  E-value=0.009  Score=57.94  Aligned_cols=111  Identities=12%  Similarity=-0.030  Sum_probs=76.5

Q ss_pred             HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHH
Q 012315          351 IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATG  429 (466)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g  429 (466)
                      .+...+.+.-.+...+....++...+.+.-++.|.+.+... ..+.+...-.| ++|+++.|+.+....+|.++++++.+
T Consensus        93 ~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~q  171 (511)
T TIGR00806        93 PVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQ  171 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444455555566667777777777777777 66777666666 69999999999999999999999999


Q ss_pred             HHhccCcch---hHHHHHHHHHHHHHHHHHHhcCCCc
Q 012315          430 YILQHGSWD---DVFKVSVGLYLVGTAVWNLFSTGEK  463 (466)
Q Consensus       430 ~l~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~  463 (466)
                      ++. ..||+   ...++..+...++.++.+++.+.+|
T Consensus       172 ll~-s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~  207 (511)
T TIGR00806       172 LLV-TLGWISYSTLNIISLVFMTFSVFLALFLKRPKR  207 (511)
T ss_pred             HHH-hcCchhHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            944 45665   4445555666666666666654444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.31  E-value=0.00013  Score=69.05  Aligned_cols=94  Identities=17%  Similarity=0.062  Sum_probs=81.2

Q ss_pred             HHhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCcc-chhhHHHHHHHHHHHHHHHHHHHHHHHhccCc-chhHHHH
Q 012315          366 QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPR-YSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-WDDVFKV  443 (466)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~  443 (466)
                      ...+....|.++++=.+.+.+-+...+.....+.+.+|+ +|++++++++....+|..+|-+.++.+.+..+ |+++|.+
T Consensus       114 ~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~  193 (493)
T KOG1330|consen  114 ASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRG  193 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEe
Confidence            334446678888888888999999999999999999985 99999999999999999999999999998844 9999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 012315          444 SVGLYLVGTAVWNLFS  459 (466)
Q Consensus       444 ~~~~~~~~~~~~~~~~  459 (466)
                      .+++.++..++.+++.
T Consensus       194 ~avl~vi~~~L~~~f~  209 (493)
T KOG1330|consen  194 SAVLGVIVGLLVFLFV  209 (493)
T ss_pred             ehHHHHHHHHHHHhhc
Confidence            9999888877776663

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.27  E-value=0.042  Score=52.00  Aligned_cols=62  Identities=8%  Similarity=0.003  Sum_probs=36.8

Q ss_pred             CchHHHHHHHHHHhhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 012315          371 DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYIL  432 (466)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~  432 (466)
                      .+.++.+....+.+...+......+.+..+..+.....+.|....+...++.....+.+++.
T Consensus       341 ~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l~  402 (406)
T KOG1479|consen  341 ESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWVF  402 (406)
T ss_pred             cCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            34556666666777777777777777776665544444455555555555555555555543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.04  E-value=0.0041  Score=60.92  Aligned_cols=123  Identities=15%  Similarity=0.128  Sum_probs=96.5

Q ss_pred             CChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHH-hh-------hchhHHHHHHHHHHhh
Q 012315          136 WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA-AK-------LGLPFLLVVRVFMGIG  207 (466)
Q Consensus       136 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~l~~~~~l~G~~  207 (466)
                      +|+...|.+..+..++.+++..+.....-+..-|+++....++.++..+.-... ..       .+.+..+..-++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            899999999999999999999999998888899999888887776655432111 10       0223333345666666


Q ss_pred             hccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC
Q 012315          208 EGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (466)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g  258 (466)
                      ....+-....++++..|+..-|...++.....++|..++..++..+.+.++
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            677777888899999999999999999999999999999999998887655

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.01  E-value=0.0039  Score=60.28  Aligned_cols=132  Identities=17%  Similarity=0.091  Sum_probs=100.1

Q ss_pred             hhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHH---Hhh-----h
Q 012315          121 VNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV---AAK-----L  192 (466)
Q Consensus       121 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---~~~-----~  192 (466)
                      -.++.....+...-|+++..+|.+-+...+..+.+.+...++.+|+|..|.-.++...-..+..++..   .+.     .
T Consensus       275 Lsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~  354 (432)
T PF06963_consen  275 LSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSI  354 (432)
T ss_pred             hcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhh
Confidence            34455555666666999999999999999999999999999999999999888887765555444332   221     1


Q ss_pred             chhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHH
Q 012315          193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF  252 (466)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~  252 (466)
                      +...++.+-++.-+|.=.+.-...-++.|..|+++||...|.-....++-.++...++-.
T Consensus       355 s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii  414 (432)
T PF06963_consen  355 SAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTII  414 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            234444455555566656777888999999999999999999999888888777666543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.95  E-value=0.0011  Score=64.26  Aligned_cols=181  Identities=13%  Similarity=0.149  Sum_probs=113.1

Q ss_pred             CCchHHHHHHHHHHHHHhhhhhhhhHHhH-hhhhhccCCChhhHH----HHHHHHHHHHHHHHhhhhhhh-cccCcchHH
Q 012315           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAI-LPMSAEFNWNPATVG----LIQSSFFWGYLLTQIAGGIWA-DTVGGKAVL  172 (466)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g----~~~~~~~~~~~~~~~~~g~l~-dr~g~r~~~  172 (466)
                      .+..|...+.+.+..+...+......... +.....++++..+.-    ...++..+......+..+... -++..|..+
T Consensus       257 ~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~  336 (488)
T KOG2325|consen  257 PKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRII  336 (488)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceee
Confidence            34566667777777766666655544443 335556677666553    334444333333333333333 333556666


Q ss_pred             HHHHHHHHHHHHHHH----HHhh-------------------------hchhHHHHH-HHHHHhhhccchhhHHHHHhcc
Q 012315          173 GFGVVWWSIATALTP----VAAK-------------------------LGLPFLLVV-RVFMGIGEGVAMPAMNNILSKW  222 (466)
Q Consensus       173 ~~~~~~~~~~~~~~~----~~~~-------------------------~~~~~l~~~-~~l~G~~~~~~~~~~~~~~~~~  222 (466)
                      ..+.++......+.-    +...                         .+.+.+++. -++.|.+.-.......++-++.
T Consensus       337 ~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySki  416 (488)
T KOG2325|consen  337 LLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKI  416 (488)
T ss_pred             eehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHH
Confidence            655444333332211    1000                         012333444 3456777777777889999999


Q ss_pred             cCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhh
Q 012315          223 VPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS  279 (466)
Q Consensus       223 ~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  279 (466)
                      ..+++++.+.++++....++..+||.+........|.|+...+.+...++...++..
T Consensus       417 Lgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~  473 (488)
T KOG2325|consen  417 LGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIV  473 (488)
T ss_pred             hCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999888887776666555444433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.85  E-value=0.54  Score=46.07  Aligned_cols=98  Identities=14%  Similarity=-0.004  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHH-HHH----h-hhchhHHHHHHHHHHhhhccchhhHHHHHh
Q 012315          147 SFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT-PVA----A-KLGLPFLLVVRVFMGIGEGVAMPAMNNILS  220 (466)
Q Consensus       147 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~----~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~  220 (466)
                      ...+...+..+..-.+..|+..|.=+..++++..+..++. .+.    + ...++..++.-++.|++.+..+.....+.+
T Consensus        53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~  132 (437)
T TIGR00939        53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGLAG  132 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhhcc
Confidence            4444455555555566666665433333433322222221 111    1 113566667778889999888888888777


Q ss_pred             cccCCCchhHHHHHHHHHHHhHHHHHhhh
Q 012315          221 KWVPVAERSRSLALVYSGMYLGSVTGLAF  249 (466)
Q Consensus       221 ~~~~~~~r~~~~~~~~~~~~~g~~ig~~~  249 (466)
                       .+|++    .++.+..+.+++++++.++
T Consensus       133 -~fp~~----~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       133 -VFPST----YSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             -cCCHH----HHHHHHhcchhHHHHHHHH
Confidence             45533    4555555666666555544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.80  E-value=0.013  Score=60.36  Aligned_cols=85  Identities=18%  Similarity=0.171  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccC-----------------
Q 012315          374 AMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHG-----------------  435 (466)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~-----------------  435 (466)
                      ..+++.-++.+.+.+...+....++.|..| ++++...|+.+....+|..+|+.++|++.+..                 
T Consensus       173 ~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~d  252 (633)
T TIGR00805       173 LLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTD  252 (633)
T ss_pred             hhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCC
Confidence            344455566666666667777788888776 69999999999999999999999999988642                 


Q ss_pred             -----cchhHHHHHHHHHHHHHHHHHHh
Q 012315          436 -----SWDDVFKVSVGLYLVGTAVWNLF  458 (466)
Q Consensus       436 -----g~~~~~~~~~~~~~~~~~~~~~~  458 (466)
                           +|+..|++.+++.++..+.++++
T Consensus       253 prWiGaWwl~Fli~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       253 PRWIGAWWIGFLICGGVALLTSIPFFFF  280 (633)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                 25566777777666655554444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.80  E-value=0.043  Score=48.45  Aligned_cols=99  Identities=14%  Similarity=0.116  Sum_probs=54.3

Q ss_pred             CchhHHHHHHHHHHHhHHHHHhhhHHHh---hc--ccCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHh
Q 012315          226 AERSRSLALVYSGMYLGSVTGLAFSPFL---IH--RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIV  300 (466)
Q Consensus       226 ~~r~~~~~~~~~~~~~g~~ig~~~~~~l---~~--~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (466)
                      ++|+....+...+.++|.++....--.-   .+  .-.|++.+.+.+++.++.+++..++-.+-+...++++ +++    
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~k-~~k----   76 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKEK-QEK----   76 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccc-ccc----
Confidence            5666666677777888887654332111   11  2349999999888887777766655333211111100 000    


Q ss_pred             hcccCCCCCCCcchhhhhcChhHHHHHHHHHH
Q 012315          301 SSCASKEPVKTIPWGLILSKPPVWALIVSHFC  332 (466)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (466)
                         ++.+...+.+..+.+|++..|...+.+..
T Consensus        77 ---~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~  105 (267)
T PF07672_consen   77 ---ENSTLSKKPSYKSILKEKETWKWILIYGI  105 (267)
T ss_pred             ---ccccccccchHHHHHccchHHHHHHHHHH
Confidence               00111123467788888887766555443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.66  E-value=0.019  Score=56.04  Aligned_cols=113  Identities=13%  Similarity=0.032  Sum_probs=76.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhcccCcc-hHHHHHHH---HHHHHHHHHHHHh-------hhchhHHHHHHHHHHhhh
Q 012315          140 TVGLIQSSFFWGYLLTQIAGGIWADTVGGK-AVLGFGVV---WWSIATALTPVAA-------KLGLPFLLVVRVFMGIGE  208 (466)
Q Consensus       140 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-~~~~~~~~---~~~~~~~~~~~~~-------~~~~~~l~~~~~l~G~~~  208 (466)
                      -.-.+..++.++-.+|..+..+.. .-++| +.+.+..+   +.....++|..-+       -.+-+..++..++.|+..
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            345667788888888888665431 11222 13333222   2333333332221       015566777789999999


Q ss_pred             ccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHh
Q 012315          209 GVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL  253 (466)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l  253 (466)
                      |-..+..+.+..+..++++|..+-.+...+..+|..+|..++-.+
T Consensus       387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998899999999999999999999999999999998888775443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.11  Score=50.51  Aligned_cols=144  Identities=15%  Similarity=0.209  Sum_probs=97.0

Q ss_pred             HHHHHHHHHhhhhhhhhHHhHhhh---hhccCCChh-hHHHHHHHHHHHHHHHHhhhhhhhcc---cCcchHHHHHHHHH
Q 012315          107 VLCFSAFLLCNMDRVNMSIAILPM---SAEFNWNPA-TVGLIQSSFFWGYLLTQIAGGIWADT---VGGKAVLGFGVVWW  179 (466)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~-~~g~~~~~~~~~~~~~~~~~g~l~dr---~g~r~~~~~~~~~~  179 (466)
                      ..+...++..+.....+....|.-   ....+.+.. -.++..-...++..++..+.+.+.+|   +|+++.+.++..+.
T Consensus       243 l~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~  322 (461)
T KOG3098|consen  243 LLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIH  322 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHH
Confidence            344444555556666666566652   222333332 23444445556666666777777654   79999999998888


Q ss_pred             HHHHHHHHHHhh----------------hchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHH
Q 012315          180 SIATALTPVAAK----------------LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGS  243 (466)
Q Consensus       180 ~~~~~~~~~~~~----------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  243 (466)
                      .++.++.-+...                +++...++..++.|++.+......+.++.+.+ +++|..+.++...-..++.
T Consensus       323 ~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s  401 (461)
T KOG3098|consen  323 LIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVAS  401 (461)
T ss_pred             HHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHH
Confidence            888776654421                13456777789999999999999999999999 5888989888887777777


Q ss_pred             HHHhhhHH
Q 012315          244 VTGLAFSP  251 (466)
Q Consensus       244 ~ig~~~~~  251 (466)
                      .++-....
T Consensus       402 ~v~~f~~~  409 (461)
T KOG3098|consen  402 CVAFFFSP  409 (461)
T ss_pred             HHHhhhhh
Confidence            66554444

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.40  E-value=0.0041  Score=62.40  Aligned_cols=153  Identities=15%  Similarity=0.136  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHH-HHHHHHhhhhhhhcccC--cchHHHHHHHHH
Q 012315          104 FIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVG--GKAVLGFGVVWW  179 (466)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~  179 (466)
                      ..+....++..........+..+.|- +..+|+.++++.+++.++..+ +.++|.+++|++..|+.  .|..+....+..
T Consensus       305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~  384 (539)
T PF03137_consen  305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS  384 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence            44555556666666666667777776 666799999999998876665 66788999999999974  344444444333


Q ss_pred             HHHHHH---HHH--------H----hh-------------------------------------hchhHHHHHHHHHHhh
Q 012315          180 SIATAL---TPV--------A----AK-------------------------------------LGLPFLLVVRVFMGIG  207 (466)
Q Consensus       180 ~~~~~~---~~~--------~----~~-------------------------------------~~~~~l~~~~~l~G~~  207 (466)
                      .++.++   ..+        +    +.                                     ..+..+++..++.-+.
T Consensus       385 ~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~  464 (539)
T PF03137_consen  385 IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFF  464 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHH
Confidence            333322   000        0    00                                     0123344444444444


Q ss_pred             hccchhhHHHHHhcccCCCchhHHHHHHHHHHH-hHHHHHhhhHHHhhcc
Q 012315          208 EGVAMPAMNNILSKWVPVAERSRSLALVYSGMY-LGSVTGLAFSPFLIHR  256 (466)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~ig~~~~~~l~~~  256 (466)
                      .+.........+-+.+|+++|..++|+...... +|.+=||++.|.++|.
T Consensus       465 ~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  465 TFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             --------------------------------------------------
T ss_pred             HHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            455556666677788999999999999776555 6888999999999885

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.10  E-value=0.17  Score=48.70  Aligned_cols=87  Identities=11%  Similarity=0.010  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhcccCc----cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHH
Q 012315          374 AMAVLCMACSQGTDAFSQSGLYSNHQDIAP----RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYL  449 (466)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~  449 (466)
                      ..+++.+.+...+.+..=+.......+.++    +++.+.+..+....++|..+++.+.+++.++.||...|.+.++.++
T Consensus        34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~  113 (372)
T PF00854_consen   34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGML  113 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHH
Confidence            445555555566666666777776666554    3577788889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC
Q 012315          450 VGTAVWNLFST  460 (466)
Q Consensus       450 ~~~~~~~~~~~  460 (466)
                      ++.+.+..-++
T Consensus       114 ~~~~~f~~~~~  124 (372)
T PF00854_consen  114 LALIVFLSGRK  124 (372)
T ss_dssp             HHHHHHHCCCC
T ss_pred             HHHHHHHhCCc
Confidence            88877665543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=94.91  E-value=0.35  Score=49.91  Aligned_cols=84  Identities=13%  Similarity=-0.003  Sum_probs=61.9

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhcccCc----cchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-------CcchhHHHHH
Q 012315          376 AVLCMACSQGTDAFSQSGLYSNHQDIAP----RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-------GSWDDVFKVS  444 (466)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-------~g~~~~~~~~  444 (466)
                      .++.+.++.++.+..-+...+...+.++    +.+-..+.++....++|+.+++.+.+++.+.       .+|...|.+.
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~  167 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP  167 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence            4444555555556666666666666553    2477888999999999999999999999744       2688899998


Q ss_pred             HHHHHHHHHHHHHhc
Q 012315          445 VGLYLVGTAVWNLFS  459 (466)
Q Consensus       445 ~~~~~~~~~~~~~~~  459 (466)
                      +++++++.+++....
T Consensus       168 ~i~m~ia~lvf~~g~  182 (654)
T TIGR00926       168 AILMILALIVFMAGS  182 (654)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            888888887776543

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=94.84  E-value=0.0088  Score=55.73  Aligned_cols=110  Identities=12%  Similarity=0.046  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccc-CcchHHHH--HHHHHHHHHHHHHHHhh--------hchhHHHHHHHHHHhhhccc
Q 012315          143 LIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGF--GVVWWSIATALTPVAAK--------LGLPFLLVVRVFMGIGEGVA  211 (466)
Q Consensus       143 ~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~l~G~~~~~~  211 (466)
                      ....++.++-.+|..+.++..-+. .+|++...  .-+++....++|...+.        .+-+..++..++.|+..|-.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            456678889999998887643221 24443332  12222222233312110        14466777788999999999


Q ss_pred             hhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHH
Q 012315          212 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF  252 (466)
Q Consensus       212 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~  252 (466)
                      .+..+.+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             -HHHH------------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888888888888888777643

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.71  E-value=0.64  Score=47.82  Aligned_cols=151  Identities=13%  Similarity=0.118  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHH-HHHHHHhhhhhhhcccC--cchHHHHHHHHHH
Q 012315          105 IVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVG--GKAVLGFGVVWWS  180 (466)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~  180 (466)
                      ++....++..+.......+..++|- +.++||.+.+.+..+.+...+ +.++|..++|++..|+.  .|.+..+.++...
T Consensus       393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~  472 (735)
T KOG3626|consen  393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSV  472 (735)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHH
Confidence            3455555666666666666677776 566799999999998865554 45578889999999974  3444444443333


Q ss_pred             HHHHH---HHHH--------------------------------------------------------------------
Q 012315          181 IATAL---TPVA--------------------------------------------------------------------  189 (466)
Q Consensus       181 ~~~~~---~~~~--------------------------------------------------------------------  189 (466)
                      +..+.   ..+.                                                                    
T Consensus       473 l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~  552 (735)
T KOG3626|consen  473 LSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSD  552 (735)
T ss_pred             HHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCC
Confidence            33322   1000                                                                    


Q ss_pred             -----------h----h--------------hchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHH
Q 012315          190 -----------A----K--------------LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMY  240 (466)
Q Consensus       190 -----------~----~--------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  240 (466)
                                 +    .              ..+..+++..++.-+..+...+..+.++-+.+++++|..++|+..+...
T Consensus       553 ~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~ir  632 (735)
T KOG3626|consen  553 GNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIR  632 (735)
T ss_pred             CceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHH
Confidence                       0    0              0012233334444444444556667778888999999999999777665


Q ss_pred             -hHHHHHhhhHHHhhc
Q 012315          241 -LGSVTGLAFSPFLIH  255 (466)
Q Consensus       241 -~g~~ig~~~~~~l~~  255 (466)
                       +|.+-+|++-|+++|
T Consensus       633 llg~IPsPIifG~~ID  648 (735)
T KOG3626|consen  633 LLGFIPSPIIFGAVID  648 (735)
T ss_pred             HHhcCCchHhhhhhHh
Confidence             688889999999987

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=94.64  E-value=0.63  Score=41.60  Aligned_cols=87  Identities=10%  Similarity=0.015  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHHhhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 012315          373 PAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT  452 (466)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  452 (466)
                      .|...+...+++...............+.+|++||++.|+.-....+++.+-..+...+.+...-...+.......+++.
T Consensus        96 ~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l  175 (250)
T PF06813_consen   96 VWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCL  175 (250)
T ss_pred             hHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence            44444444454444444444444444456789999999999999999999988888877776322233333333344444


Q ss_pred             HHHHHhc
Q 012315          453 AVWNLFS  459 (466)
Q Consensus       453 ~~~~~~~  459 (466)
                      +...+++
T Consensus       176 ~~~~~vr  182 (250)
T PF06813_consen  176 VAMFFVR  182 (250)
T ss_pred             HHhhhee
Confidence            4444443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=94.49  E-value=0.17  Score=48.34  Aligned_cols=101  Identities=5%  Similarity=-0.129  Sum_probs=76.8

Q ss_pred             ChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHH--HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhh
Q 012315          137 NPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG--FGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPA  214 (466)
Q Consensus       137 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~  214 (466)
                      +..--|.+-++..+...++++..|++..++.+-.-+.  ...++.+...+++.+.+  |.|..+++-++.+....+..+.
T Consensus       283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~--~Iwv~Y~~yIif~~~y~fliTi  360 (412)
T PF01770_consen  283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTG--NIWVCYAGYIIFRSLYMFLITI  360 (412)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444588889999999999999999977777654444  33444555566667777  9999999999888888888888


Q ss_pred             HHHHHhcccCCCchhHHHHHHHHHH
Q 012315          215 MNNILSKWVPVAERSRSLALVYSGM  239 (466)
Q Consensus       215 ~~~~~~~~~~~~~r~~~~~~~~~~~  239 (466)
                      +..-++.....+.-|..+|+.....
T Consensus       361 A~~qIA~~l~~e~yaLVFGiNtf~A  385 (412)
T PF01770_consen  361 ASFQIAKNLSEERYALVFGINTFVA  385 (412)
T ss_pred             HHHHHHHhccccceeeeeeeHHHHH
Confidence            8888888887788788777766543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=93.89  E-value=0.52  Score=43.20  Aligned_cols=70  Identities=11%  Similarity=0.139  Sum_probs=48.8

Q ss_pred             HHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhccc
Q 012315          151 GYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWV  223 (466)
Q Consensus       151 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~  223 (466)
                      ..+..+++.+.+.+++|-|+++.++..........- +-+  .+..++-.....|++.+..+..--+++++.-
T Consensus        70 ~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~p--r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   70 SLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN-LEP--RYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cch--hHHhhccHHHhhccccccccccCcceecHHH
Confidence            334455555689999999999988876665443221 223  5677888899999999988877666665554

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=92.97  E-value=9.9  Score=37.63  Aligned_cols=73  Identities=18%  Similarity=0.115  Sum_probs=56.9

Q ss_pred             HHHHHhhhccchhhHHHHHhcccC-CCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHH
Q 012315          201 RVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW  273 (466)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~  273 (466)
                      -++.|+.........-..+.+.+| +++|...+|-++...++..++..++++.+.+.+||.....+.-++.++.
T Consensus       273 vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~lit  346 (472)
T TIGR00769       273 VIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLT  346 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            445677777777777788888887 4578899999988888888777777799999999998877766665553

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.65  E-value=0.15  Score=44.77  Aligned_cols=64  Identities=11%  Similarity=0.106  Sum_probs=50.0

Q ss_pred             HHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhh---------hcccCcchH
Q 012315          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIW---------ADTVGGKAV  171 (466)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l---------~dr~g~r~~  171 (466)
                      ....+.+.+-....++...+-.+.++.|.++.....++-+..+.-.+..++.|..         .||+|||+.
T Consensus        21 ~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~   93 (412)
T KOG4830|consen   21 AYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS   93 (412)
T ss_pred             eechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence            3455677777777777777777888889999888888888888888888887643         568898874

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=91.22  E-value=4.3  Score=37.89  Aligned_cols=131  Identities=8%  Similarity=0.006  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcccCcchH--HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHH
Q 012315          142 GLIQSSFFWGYLLTQIAGGIWADTVGGKAV--LGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNIL  219 (466)
Q Consensus       142 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~  219 (466)
                      |..-.+..+..+++.+..|.+--++.|..-  +.++.+.-+...++++..+  +.|..+++.++.+.-..+..+.+..-+
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~--~Iw~~Ya~yvlfr~~y~l~itiA~~~i  351 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQ--HIWVCYAGYVLFRVIYQLTITIATFQI  351 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhccc--ceehhhhhHHHHHhhHhhhhhHHHHHH
Confidence            667777788888899999999888777643  3344444444445555555  899999998888888888888888888


Q ss_pred             hcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC-----------chHHHHHHhHHHHHHHHHH
Q 012315          220 SKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-----------WPSVFYSFGSLGTVWFTVW  277 (466)
Q Consensus       220 ~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-----------w~~~~~~~~~~~~~~~~~~  277 (466)
                      ++....+.-|..+|+.....-   ++-.++.-.++|.-|           +..-|.+.+++.++.....
T Consensus       352 A~nL~~e~~gLvFGiNTFvAl---~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~  417 (433)
T KOG3810|consen  352 ARNLSSELFGLVFGINTFVAL---ILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIE  417 (433)
T ss_pred             HHhhhhhhheeeeehHHHHHH---HHHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHH
Confidence            888888888888887765433   333344434444222           2334666666666654443

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=90.88  E-value=11  Score=35.10  Aligned_cols=95  Identities=12%  Similarity=0.150  Sum_probs=60.8

Q ss_pred             Hhhhhhc-cCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHH----HHHHH---HHHHHHHHHHHhhhchhHHH
Q 012315          127 ILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG----FGVVW---WSIATALTPVAAKLGLPFLL  198 (466)
Q Consensus       127 ~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~----~~~~~---~~~~~~~~~~~~~~~~~~l~  198 (466)
                      +..+... .|-..-|.+++.+.+.....+|+...-++.|.--.-+.+.    .|++.   ..+..+.+++-..++-+.++
T Consensus        30 l~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly  109 (508)
T COG4262          30 LGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLY  109 (508)
T ss_pred             HHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHH
Confidence            3334444 3567788899999999999999998888877533222211    12111   11111222222222557788


Q ss_pred             HHHHHHHhhhccchhhHHHHHhc
Q 012315          199 VVRVFMGIGEGVAMPAMNNILSK  221 (466)
Q Consensus       199 ~~~~l~G~~~~~~~~~~~~~~~~  221 (466)
                      ++-++.|.-.|.-.|..+.++..
T Consensus       110 ~lt~vIG~LVG~EiPL~mrml~~  132 (508)
T COG4262         110 ALTAVIGVLVGAEIPLLMRMLQR  132 (508)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHH
Confidence            88899999999999999999887

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=90.58  E-value=4.7  Score=36.15  Aligned_cols=136  Identities=13%  Similarity=0.038  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccCcc--hHHHHHHHHHHHHHHHHHHHh----h-hchhHHHHHHHHHHhhhccchh
Q 012315          141 VGLIQSSFFWGYLLTQIAGGIWADTVGGK--AVLGFGVVWWSIATALTPVAA----K-LGLPFLLVVRVFMGIGEGVAMP  213 (466)
Q Consensus       141 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~~~~~~~~~~~~----~-~~~~~l~~~~~l~G~~~~~~~~  213 (466)
                      -|.+.+.+++..++++-+..++..|-..|  ..+.+..++..+...+..+..    + .+...-+++..+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            48999999999999999998888876555  455566555555544433321    1 1222334555566677889999


Q ss_pred             hHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHH
Q 012315          214 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTV  276 (466)
Q Consensus       214 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~  276 (466)
                      ..+.+=+++.|++.|...+.++..-.++-.-++-..--.-....+-|..|-++.....+..+.
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence            999999999999999999888765544432222111000001234567777776665555443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=89.60  E-value=3.8  Score=39.17  Aligned_cols=113  Identities=14%  Similarity=-0.005  Sum_probs=76.0

Q ss_pred             ChhhHHHHHHH-HHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHH-------HhhhchhHHHHHHHHHHhhh
Q 012315          137 NPATVGLIQSS-FFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV-------AAKLGLPFLLVVRVFMGIGE  208 (466)
Q Consensus       137 s~~~~g~~~~~-~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~l~G~~~  208 (466)
                      +..-.-++..+ +.+...+|.+...++-++=.|+.......=...+-.+.++.       ..  +-+++++...+.|+..
T Consensus       280 ~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~--~~~~~~~l~~~lglsn  357 (406)
T KOG1479|consen  280 GDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFE--SDGWFIFLMSLLGLSN  357 (406)
T ss_pred             chhhHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCceec--CchHHHHHHHHHHhcc
Confidence            34444555566 88888888777777766543333333222222222222211       22  5677888899999999


Q ss_pred             ccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHH
Q 012315          209 GVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSP  251 (466)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~  251 (466)
                      |=..+..+.+..+-++++++-.+-.+.......|...|..++-
T Consensus       358 GYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~  400 (406)
T KOG1479|consen  358 GYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW  400 (406)
T ss_pred             chHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            9888889999999998888888877888888888777776653

>PRK03612 spermidine synthase; Provisional

Probab=89.51  E-value=16  Score=36.79  Aligned_cols=68  Identities=16%  Similarity=0.041  Sum_probs=42.2

Q ss_pred             hhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhc-cCcchhHHHHHHHHHHHHH
Q 012315          385 GTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ-HGSWDDVFKVSVGLYLVGT  452 (466)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~  452 (466)
                      +..+...|...-.......++.+...|-.+....+|+++|+.+.|++.- ..|.....++.+.+.++..
T Consensus       122 ~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a  190 (521)
T PRK03612        122 LLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA  190 (521)
T ss_pred             HHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            3334444444444433333346777888889999999999999998775 4676555444444443333

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=88.57  E-value=0.33  Score=44.06  Aligned_cols=111  Identities=12%  Similarity=0.065  Sum_probs=72.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHH---HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhH
Q 012315          139 ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG---FGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAM  215 (466)
Q Consensus       139 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~  215 (466)
                      .|.-|....+.+|..+..--.-..--  ..-+.+.   .-.+++.+...+..+.+  ++|..++.-+.-|+-.|..+...
T Consensus       288 sqYRwyqvlYQlGVFiSRSS~~~~~~--p~l~~LailQ~vNl~ff~~~a~~~ftp--si~ivf~lI~~EGLlGGasYVNT  363 (409)
T KOG3880|consen  288 SQYRWYQVLYQLGVFISRSSINLFTM--PYLWLLAILQFVNLLFFLLQAWYWFTP--SIWIVFALILFEGLLGGASYVNT  363 (409)
T ss_pred             hcchhhheeeeeeEEEEeccceEEec--hHHHHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHhhcCchHHHHH
Confidence            45677777777665443221111100  0111111   22233334445566677  88888888888999888888888


Q ss_pred             HHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHh
Q 012315          216 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL  253 (466)
Q Consensus       216 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l  253 (466)
                      .--+.+-.++++|-.+++.....-++|..++.+++-.+
T Consensus       364 f~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  364 FHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            77777877889999999999999999988877766443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=88.44  E-value=0.53  Score=45.28  Aligned_cols=129  Identities=14%  Similarity=0.002  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhc
Q 012315          142 GLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSK  221 (466)
Q Consensus       142 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~  221 (466)
                      .|-..++.+...+.+....++.||+|-|+.+..+...+.++..+.++.+  +.+.....+-..|+-.+....+-+..++.
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~--~~~~~~~~~~~~G~~~~~~~~~p~~l~~~  412 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVL--NTYVVLSHRSTAGILSSPLLTVPYGALAL  412 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhh--hHHHHHHHHhhcceeecchhcccHHHHHH
Confidence            3555677778888899999999999977777766666666666666666  66666666766665444433333333322


Q ss_pred             cc---------------------C--CCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC-chHHHHHHhHHHHH
Q 012315          222 WV---------------------P--VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTV  272 (466)
Q Consensus       222 ~~---------------------~--~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-w~~~~~~~~~~~~~  272 (466)
                      +.                     .  ...+|...|+.++...+-.++.....|.+.+..| -+.+-.+.+...+.
T Consensus       413 y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~  487 (498)
T KOG0637|consen  413 YAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALL  487 (498)
T ss_pred             HHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHH
Confidence            21                     1  1234677778888888888888888888877665 33333333444333

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=85.36  E-value=12  Score=36.96  Aligned_cols=61  Identities=16%  Similarity=0.132  Sum_probs=47.4

Q ss_pred             HHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCch
Q 012315          200 VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP  260 (466)
Q Consensus       200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~  260 (466)
                      .-++..+..-..+.+..+.-+++.+|.-=|+.|.+.+...++|+---..+.-+++|.+.++
T Consensus       411 ~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~  471 (544)
T PF13000_consen  411 QHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVA  471 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcccc
Confidence            3566666666778888999999999999999999999999999766666666666654443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=83.54  E-value=17  Score=32.45  Aligned_cols=8  Identities=38%  Similarity=0.663  Sum_probs=3.1

Q ss_pred             HHhhcccC
Q 012315          251 PFLIHRFG  258 (466)
Q Consensus       251 ~~l~~~~g  258 (466)
                      ||...++|
T Consensus        96 Gw~~grfG  103 (254)
T PF07857_consen   96 GWASGRFG  103 (254)
T ss_pred             HHHHhhce
Confidence            34433333

The region concerned is approximately 280 residues long.

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=80.07  E-value=39  Score=29.27  Aligned_cols=37  Identities=24%  Similarity=0.362  Sum_probs=21.0

Q ss_pred             CchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHH
Q 012315          226 AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV  262 (466)
Q Consensus       226 ~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~  262 (466)
                      +++.+.-.......-++..+|..+++.+.+..+....
T Consensus       158 ~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~~al  194 (209)
T PF06912_consen  158 KDRALRRALRYLLIILSFFIGAILGALLYRRLGFWAL  194 (209)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3333333444555556666777777777777675433

The function of this family is unknown although a few members are thought to be membrane proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	466
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-54
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	3e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  187 bits (478), Expect = 1e-54
 Identities = 63/414 (15%), Positives = 129/414 (31%), Gaps = 53/414 (12%)

Query: 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGI 161
           RW I +  F  +    + R N ++A+ P   E  ++   +G   S     Y  ++   G 
Sbjct: 26  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 84

Query: 162 WADTVGGKAVLGFGVVWWSIATALTPVAAKL--GLPFLLVVRVFMGIGEGVAMPAMNNIL 219
            +D    +  L  G++  +               +  + V+    G  +G+  P     +
Sbjct: 85  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144

Query: 220 SKWVPVAERSRSLALVYSGMYLGS-VTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278
             W    ER   +++      +G  +  L F   +     W +  Y       +      
Sbjct: 145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 204

Query: 279 SKAHSSPAEDPQLRPAEKKLI-----VSSCASKEPVKTIPWGLILSKPPVWALIVSHFCH 333
           +    +P         E K             +   K I    +L    +W + +++   
Sbjct: 205 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV 264

Query: 334 NWGTFILLTWMPTYYNQ------------------------------------------I 351
               + +L W PTY  +                                           
Sbjct: 265 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 324

Query: 352 MQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS-GVLL 410
           +  +  +  A  +  ++   +P + ++CM             +  +  ++AP+ + G   
Sbjct: 325 VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA 384

Query: 411 GLSNTAGVLAG-VFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEK 463
           G +   G L G V  +A  GY +    WD  F V +G  ++   +  +   GEK
Sbjct: 385 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 438

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 3/166 (1%)

Query: 126 AILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL 185
           AI  M+ + N     V  +  ++   Y ++Q+  G  +D VG + V+  G+  + +AT +
Sbjct: 22  AIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV 81

Query: 186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVT 245
               +   L  L+      G+G GV       +        +   + +L+  G+ +  + 
Sbjct: 82  AVTTS--SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL 139

Query: 246 GLAFSPFLIHRFGWPSVFYSFGSLGTV-WFTVWLSKAHSSPAEDPQ 290
                  L   + W + +     L     F++      + P + P+
Sbjct: 140 APLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR 185

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 6e-05
 Identities = 72/497 (14%), Positives = 130/497 (26%), Gaps = 151/497 (30%)

Query: 9   SPILQSPPYISARNKLSRA--ELRPRGLPRLLLGVLSGDRVCSFRVSVRDVKSESYNV-- 64
            P + +  YI  R++L           + RL             R ++ +++     +  
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL-------QPYLKLRQALLELRPAKNVLID 156

Query: 65  ----SEKSVKFEEALKDIALRSE-DLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNM- 118
               S K+    +      ++ + D  +           F   W  +  C S   +  M 
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKI-----------F---WLNLKNCNSPETVLEML 202

Query: 119 ------------DRVNMSIAILPMSAE---------FNWNPATVGLI-----QSSFFWGY 152
                        R + S  I  +                P    L+     Q++  W  
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 153 -------LLTQIAGGIWADTVGGKAVLGFGVV-----------------WWSIATALTPV 188
                  LLT     +  D +         +                  +        P 
Sbjct: 262 FNLSCKILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW--VPVAERSRSLALVYSGMYLGSVTG 246
                 P  L +     I E  ++         W  V   + +  +          S+  
Sbjct: 321 EVLTTNPRRLSI-----IAE--SIRDGLATWDNWKHVNCDKLTTIIES--------SLNV 365

Query: 247 LAFSPFLI-HRFGWPSVF-----YSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIV 300
           L   P      F   SVF          L  +WF             D  +     KL  
Sbjct: 366 L--EPAEYRKMFDRLSVFPPSAHIPTILLSLIWF--------DVIKSDVMV--VVNKLHK 413

Query: 301 SSCASKEPVK---TIPWGLILSKPPV---WAL---IVSHF----CHNWGTFILLTWMPTY 347
            S   K+P +   +IP   +  K  +   +AL   IV H+      +    I       +
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 348 YNQI---MQSIG-----------FLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSG 393
           Y+ I   +++I            FL   F   ++ H  +        A     +   Q  
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA-----WNASGSILNTLQQLK 528

Query: 394 LYSNH-QDIAPRYSGVL 409
            Y  +  D  P+Y  ++
Sbjct: 529 FYKPYICDNDPKYERLV 545

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 1/153 (0%)

Query: 103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIW 162
                L  S F L  +      I +      F       GLIQS+F++GY +  I  GI 
Sbjct: 25  IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGIL 84

Query: 163 ADTVGGKAVLGFGVVWWSIATALTPVAAKLG-LPFLLVVRVFMGIGEGVAMPAMNNILSK 221
              +  KA +  G+  +++  AL   AA++      LV    +  G G    A N  ++ 
Sbjct: 85  MKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTV 144

Query: 222 WVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI 254
             P +     L L  +    G++  + F   LI
Sbjct: 145 LGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	466
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.96
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.94
2xut_A	524	Proton/peptide symporter family protein; transport	99.93
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.65
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.5
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.5
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.47
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.38
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.22
2xut_A	524	Proton/peptide symporter family protein; transport	98.92

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=4.2e-35  Score=288.11  Aligned_cols=355  Identities=16%  Similarity=0.234  Sum_probs=278.8

Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHH
Q 012315          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (466)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (466)
                      .+|+.+...++..+..+++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||+++.++.++.+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence            4567788888888999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH----HhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc
Q 012315          181 IATALTPV----AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (466)
Q Consensus       181 ~~~~~~~~----~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~  256 (466)
                      ++.+++++    ++  +++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++++.+.
T Consensus       104 ~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  181 (451)
T 1pw4_A          104 AVMLFMGFVPWATS--SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  181 (451)
T ss_dssp             HHHHHHHHCHHHHS--SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhccc--cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999    88  9999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             cC-chHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHH-----HHhhcccCCCCCCCcchhhhhcChhHHHHHHHH
Q 012315          257 FG-WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKK-----LIVSSCASKEPVKTIPWGLILSKPPVWALIVSH  330 (466)
Q Consensus       257 ~g-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (466)
                      +| ||+.|++.+++.++..++.++..||+++..+..+.++.+     +..++.+++.+.++...++++++|.++...+..
T Consensus       182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (451)
T 1pw4_A          182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN  261 (451)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHH
Confidence            98 999999999888877776666666655433211111100     000000001111111246788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--------------------------------H-------HHHHHhHHHH-HHHHHHhcC
Q 012315          331 FCHNWGTFILLTWMPTYYNQ--------------------------------I-------MQSIGFLGPA-FFLTQLSHV  370 (466)
Q Consensus       331 ~~~~~~~~~~~~~~~~~l~~--------------------------------~-------~~~~~~~~~~-~~~~~~~~~  370 (466)
                      ++..........++|.|+++                                .       ....+..+.. +.+..+...
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (451)
T 1pw4_A          262 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN  341 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999877                                0       1111111111 222222222


Q ss_pred             --CchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHH-HHHHHHHHHHHHhccCcchhHHHHHHH
Q 012315          371 --DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVL-AGVFGTAATGYILQHGSWDDVFKVSVG  446 (466)
Q Consensus       371 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~-g~~i~~~~~g~l~~~~g~~~~~~~~~~  446 (466)
                        .+.+......++.+++.....+....+..+..| +++|+++|+.+....+ |..++|.+.|.+.|..||...|++.++
T Consensus       342 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~  421 (451)
T 1pw4_A          342 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG  421 (451)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence              244445555555555555556666677777776 5899999999999999 999999999999999999999999888


Q ss_pred             HHHHHHHHHHHh
Q 012315          447 LYLVGTAVWNLF  458 (466)
Q Consensus       447 ~~~~~~~~~~~~  458 (466)
                      +.+++.++....
T Consensus       422 ~~~~~~~~~~~~  433 (451)
T 1pw4_A          422 GSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888877766654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=6.4e-34  Score=278.66  Aligned_cols=337  Identities=13%  Similarity=0.123  Sum_probs=266.0

Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHH
Q 012315          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (466)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (466)
                      +++..+..+++.++..+++.....+..|.+.+++|++..++|++.+++.++..+++++.|+++||+|||++++++.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~  102 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence            45666777778888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH---HHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhh-cc
Q 012315          181 IATALT---PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI-HR  256 (466)
Q Consensus       181 ~~~~~~---~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~-~~  256 (466)
                      ++.+++   .+++  +++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++++. +.
T Consensus       103 ~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  180 (438)
T 3o7q_A          103 LGAALFWPAAEIM--NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN  180 (438)
T ss_dssp             HHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred             HHHHHHHhccccc--cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999998   7777  99999999999999999999999999999999999999999999999999999999999998 55


Q ss_pred             cC-------------------------chHHHHHHhHHHHHHHHHHhhh-cccCCCCCCCCChHHHHHHhhcccCCCCCC
Q 012315          257 FG-------------------------WPSVFYSFGSLGTVWFTVWLSK-AHSSPAEDPQLRPAEKKLIVSSCASKEPVK  310 (466)
Q Consensus       257 ~g-------------------------w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (466)
                      .+                         ||+.|++.+++.++..++.++. .|+.++++++.             +++++.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-------------~~~~~~  247 (438)
T 3o7q_A          181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD-------------AKQGSF  247 (438)
T ss_dssp             SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC-------------SSTTSH
T ss_pred             cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc-------------ccccch
Confidence            54                         9999988877766665554443 22222211010             011112


Q ss_pred             CcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------------------------------------HH
Q 012315          311 TIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY-YNQ-------------------------------------IM  352 (466)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~-------------------------------------~~  352 (466)
                      +.++++++++|.++...+..++....+.....++|.| +++                                     ..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~  327 (438)
T 3o7q_A          248 SASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV  327 (438)
T ss_dssp             HHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            3457788999999999999999988899999999999 776                                     22


Q ss_pred             HHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 012315          353 QSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYIL  432 (466)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~  432 (466)
                      ...+.++..+........++.+..+.. .+.+++.+...+..+.+..+..|++++.+.++.. .+.+|+.++|.+.|++.
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~  405 (438)
T 3o7q_A          328 LAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVS  405 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHH
Confidence            233333334444444444444443333 4444555666677777766767766888888877 77899999999999999


Q ss_pred             ccCc-chhHHHHHHHHHHHHHHH
Q 012315          433 QHGS-WDDVFKVSVGLYLVGTAV  454 (466)
Q Consensus       433 ~~~g-~~~~~~~~~~~~~~~~~~  454 (466)
                      |..| ++..|.+.+++.++..+.
T Consensus       406 ~~~g~~~~~~~~~~~~~~~~~~~  428 (438)
T 3o7q_A          406 DAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_dssp             HHHTSSGGGGHHHHHHHHHHHHH
T ss_pred             HHhcchHHHHHHHHHHHHHHHHH
Confidence            9977 999988776665554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.97  E-value=1.2e-31  Score=257.11  Aligned_cols=321  Identities=12%  Similarity=0.064  Sum_probs=256.1

Q ss_pred             HHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHH
Q 012315          107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (466)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  186 (466)
                      ..+++..+...+....+.+.+|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            45566677788888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHH
Q 012315          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (466)
Q Consensus       187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~  266 (466)
                      .+++  +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++++.+..|||+.|++.
T Consensus        83 ~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  160 (375)
T 2gfp_A           83 VTTS--SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL  160 (375)
T ss_dssp             HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHhc--cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence            9998  99999999999999999999999999999999999999999999999999999999999999988999999998


Q ss_pred             hHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (466)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (466)
                      +++.++..+...+..||+++++++.                ++.+.++++++|+|.++...+..++..........+.|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (375)
T 2gfp_A          161 LVLCAGVTFSMARWMPETRPVDAPR----------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGV  224 (375)
T ss_dssp             HHHHHHHHCCCCCSSCCCSTTTCCC----------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHHHCcccCCCCccc----------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887776665555555544322111                112335677889999999988888888888888888888


Q ss_pred             HHHH--------------------------------HH---HHHHhHH-HHHHHH--HHhc--CCchHHHHHHHHHHhhh
Q 012315          347 YYNQ--------------------------------IM---QSIGFLG-PAFFLT--QLSH--VDSPAMAVLCMACSQGT  386 (466)
Q Consensus       347 ~l~~--------------------------------~~---~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~~~~  386 (466)
                      |+++                                ..   ...+... ......  ....  .++.+...+..++.+++
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  304 (375)
T 2gfp_A          225 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFG  304 (375)
T ss_dssp             SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH
Confidence            7765                                00   0111100 000000  0000  11334344445555566


Q ss_pred             hhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHH
Q 012315          387 DAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSV  445 (466)
Q Consensus       387 ~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~  445 (466)
                      .+...+.......+..|+++|++.|+.+....+|..++|.+.|.+.+..++...+.+.+
T Consensus       305 ~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          305 AGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            66667777778888778999999999999999999999999999998888877776643

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=5.2e-29  Score=247.52  Aligned_cols=350  Identities=14%  Similarity=0.079  Sum_probs=237.7

Q ss_pred             HHHHHHHHHhhhhhhhhHHhHh-hhhhc-----cCCChhhHHHHHHHHHHHHHHHHhhhhhhhcc-cCcchHHHHHHHHH
Q 012315          107 VLCFSAFLLCNMDRVNMSIAIL-PMSAE-----FNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWW  179 (466)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~  179 (466)
                      ....+..+...+..+.....++ ++.++     +|.+..+.+++.+++.++..+++++.|+++|| +|||+++..+.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~   95 (491)
T 4aps_A           16 STLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLI   95 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            3334444444444444444433 45554     99999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCc--hhHHHHHHHHHHHhHHHHHhhhHHHhhccc
Q 012315          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE--RSRSLALVYSGMYLGSVTGLAFSPFLIHRF  257 (466)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~  257 (466)
                      +++.+++++++  +++.++++|++.|++.+...+...+++.|++|+++  |+.++++++.+.++|..++|.+++++.+..
T Consensus        96 ~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  173 (491)
T 4aps_A           96 MLGHIVLALPF--GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA  173 (491)
T ss_dssp             HHHHHHHHSCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhh--hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999998  99999999999999999999999999999999988  778888899999999999999999999999


Q ss_pred             CchHHHHHHhHHHHHHHHHHhhhcccCCCCC-----CCCChHHHHHHhhc------------------ccCC--------
Q 012315          258 GWPSVFYSFGSLGTVWFTVWLSKAHSSPAED-----PQLRPAEKKLIVSS------------------CASK--------  306 (466)
Q Consensus       258 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~------------------~~~~--------  306 (466)
                      |||+.|++.++..++..+...+..++..+++     ....+++.+...+.                  ...+        
T Consensus       174 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  253 (491)
T 4aps_A          174 GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLL  253 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhh
Confidence            9999999987776665555444333221111     11111111110000                  0000        


Q ss_pred             ---------------CCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Q 012315          307 ---------------EPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ---------------------  350 (466)
Q Consensus       307 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------------  350 (466)
                                     .+++.....+..+....+.+.+..++....+.....+++.|+.+                     
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (491)
T 4aps_A          254 TIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIM  333 (491)
T ss_dssp             HHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHH
Confidence                           00000000111122234445555555555556666677777766                     


Q ss_pred             ---------------------HHHHHHhHHHHHHHHHHhc---------CCchHHHHHHHHHHhhhhhhhhhhhhhhhcc
Q 012315          351 ---------------------IMQSIGFLGPAFFLTQLSH---------VDSPAMAVLCMACSQGTDAFSQSGLYSNHQD  400 (466)
Q Consensus       351 ---------------------~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (466)
                                           .....+....++.+..+..         ..+.+......++.+.+.+...+..+.+..+
T Consensus       334 ~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  413 (491)
T 4aps_A          334 LYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTK  413 (491)
T ss_dssp             HHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence                                 0001222222222211111         1234445555555555666666777778888


Q ss_pred             cCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHhc
Q 012315          401 IAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFS  459 (466)
Q Consensus       401 ~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  459 (466)
                      ..| +.||++.|+.+....+|..++|.+.+.+.+. ++...|.+.+++.+++.++.+++.
T Consensus       414 ~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  472 (491)
T 4aps_A          414 LAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLS  472 (491)
T ss_dssp             HTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777 5899999999999999999999999998875 666777777777777666655553

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.96  E-value=5.2e-28  Score=240.32  Aligned_cols=361  Identities=17%  Similarity=0.155  Sum_probs=234.6

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCC--------ChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHH
Q 012315          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNW--------NPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG  173 (466)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~  173 (466)
                      .+...++..++.++.+++...++..+|.+.++++.        +..+.|++.+.+.+|..++++++|+++||+|||+++.
T Consensus        10 ~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~   89 (491)
T 4gc0_A           10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK   89 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            34445556677788899999999889988877642        3456789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH------------------HhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHH
Q 012315          174 FGVVWWSIATALTPV------------------AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALV  235 (466)
Q Consensus       174 ~~~~~~~~~~~~~~~------------------~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  235 (466)
                      ++.+++.++.+++++                  ++  |++.++++|+++|++.|...+....+++|+.|+++|++..++.
T Consensus        90 ~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~--~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~  167 (491)
T 4gc0_A           90 IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAG--YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN  167 (491)
T ss_dssp             HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGG--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence            999999999999984                  56  8999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhhhHHHhhcc--------cCchHHHHHHhHHHHHHHHHHhhhcccCCCCCC-CCChHHHHHH-hh----
Q 012315          236 YSGMYLGSVTGLAFSPFLIHR--------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP-QLRPAEKKLI-VS----  301 (466)
Q Consensus       236 ~~~~~~g~~ig~~~~~~l~~~--------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~----  301 (466)
                      +.+..+|.++++.++..+...        .+||..+.+..+..++.. ...+..||+|+... +.+.++.... .+    
T Consensus       168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~  246 (491)
T 4gc0_A          168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFL-MLLYTVPESPRWLMSRGKQEQAEGILRKIMGN  246 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHH-HHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhh-hhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence            999999999999888776543        246776666555555443 44455677654211 1111111000 00    


Q ss_pred             ---------ccc-CCCCCCCcchhhhhcChhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--------------------
Q 012315          302 ---------SCA-SKEPVKTIPWGLILSKPPVWALIVS-HFCHNWGTFILLTWMPTYYNQ--------------------  350 (466)
Q Consensus       302 ---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~--------------------  350 (466)
                               ..+ ..+.++.......++.+........ .+........+..+.+.+.+.                    
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (491)
T 4gc0_A          247 TLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINL  326 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHH
Confidence                     000 0000001111222333333322222 222233334444455544444                    


Q ss_pred             ----------------HHHHHHhHHHHHHHHH----HhcCCchHHHHHH-HHHHhhhhhhhhhhhhhhhcccCc-cchhh
Q 012315          351 ----------------IMQSIGFLGPAFFLTQ----LSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGV  408 (466)
Q Consensus       351 ----------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~  408 (466)
                                      .....+.....+.+..    .......+..+.. .+...++.....+..+.+..|.+| +.|++
T Consensus       327 ~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~  406 (491)
T 4gc0_A          327 TFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGK  406 (491)
T ss_dssp             HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHH
T ss_pred             HHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHH
Confidence                            1111111111111111    1112222222222 222333333344667788889988 69999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc------CcchhHHHHHHHHHHHHHHHHHHh--cCCCccc
Q 012315          409 LLGLSNTAGVLAGVFGTAATGYILQH------GSWDDVFKVSVGLYLVGTAVWNLF--STGEKVV  465 (466)
Q Consensus       409 ~~g~~~~~~~~g~~i~~~~~g~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  465 (466)
                      +.|+.+..+.+++++++.+.+.+.+.      .++...|++.+++.+++.++.+++  ++|.|.+
T Consensus       407 ~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tL  471 (491)
T 4gc0_A          407 ALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL  471 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCH
Confidence            99999999999999999988877553      345567777777777777666555  5555554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.94  E-value=1.2e-26  Score=225.35  Aligned_cols=337  Identities=12%  Similarity=0.029  Sum_probs=211.3

Q ss_pred             HHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHH---HHHHH
Q 012315          113 FLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT---ALTPV  188 (466)
Q Consensus       113 ~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~---~~~~~  188 (466)
                      .+..........+.+|. +.+++|++..+.|++.+++.++..++++++|+++||+|||++++++.++.+++.   ....+
T Consensus        16 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~   95 (417)
T 2cfq_A           16 FFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF   95 (417)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555566666 556799999999999999999999999999999999999999998887765532   11122


Q ss_pred             Hhhhch-hHHHHHHHHHHhhhccchhhHHHHHhcccCC--CchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHH
Q 012315          189 AAKLGL-PFLLVVRVFMGIGEGVAMPAMNNILSKWVPV--AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS  265 (466)
Q Consensus       189 ~~~~~~-~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~  265 (466)
                      .+  .. ..++..+++.|++.+..++.....+.++.++  ++++...|.......+|..++|.+++++.+ .+|+..|++
T Consensus        96 ~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~  172 (417)
T 2cfq_A           96 GP--LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWL  172 (417)
T ss_dssp             HH--HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTT
T ss_pred             HH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHH
Confidence            22  11 1123445555555554444444444444432  456777888888899999999999999887 589999988


Q ss_pred             HhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 012315          266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  345 (466)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (466)
                      .++..++..+..++..|++++..++ +  +.+     .+++++....++++++++|.++...+..++....+..+..++|
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (417)
T 2cfq_A          173 GSGCALILAVLLFFAKTDAPSSATV-A--NAV-----GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFA  244 (417)
T ss_dssp             TTTTTTTHHHHSCSSCCCCSCSSCS-S--SSS-----SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCccccccccc-c--ccc-----ccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            7776544444333333332211100 0  000     0001111112456788999988776665555445555555566


Q ss_pred             HHHHH----------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 012315          346 TYYNQ----------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQG  385 (466)
Q Consensus       346 ~~l~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (466)
                      .|+.+                                        .....+..+.++........++.+..++...+.++
T Consensus       245 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  324 (417)
T 2cfq_A          245 NFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMF  324 (417)
T ss_dssp             HHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHH
T ss_pred             HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            65433                                        11222222233333333333444443333333333


Q ss_pred             hhhhhhhhhhhhhcccCc-cchhhHHHHH-HHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHhcC
Q 012315          386 TDAFSQSGLYSNHQDIAP-RYSGVLLGLS-NTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFST  460 (466)
Q Consensus       386 ~~~~~~~~~~~~~~~~~p-~~~g~~~g~~-~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  460 (466)
                      ......+..+.+..+..| +.||++.|+. +....+|++++|.+.|++.|..|+...|.+.+++.+++.++.....+
T Consensus       325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          325 EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            333344445667777777 6899999984 78888999999999999999888989999888888887776655443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.93  E-value=1.9e-24  Score=216.49  Aligned_cols=169  Identities=15%  Similarity=0.169  Sum_probs=143.3

Q ss_pred             HHHHHHhhhhhhhhHHhHh-hhhhccC------CChhhHHHHHHHHHHHHHHHHhhhhhhhccc-CcchHHHHHHHHHHH
Q 012315          110 FSAFLLCNMDRVNMSIAIL-PMSAEFN------WNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWWSI  181 (466)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~-~~~~~~~------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~  181 (466)
                      .+..++..+..+...+.++ ++.+++|      ++..+.|++.+++.++..++.++.|+++||+ |||+++.++.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~   97 (524)
T 2xut_A           18 IASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV   97 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            3344444444444444544 4677899      9999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHH---HHHHHHhHHHHHhhhHHHhhcccC
Q 012315          182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLAL---VYSGMYLGSVTGLAFSPFLIHRFG  258 (466)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~ig~~~~~~l~~~~g  258 (466)
                      +.+++++++. +++.+++.|++.|++.+...+...+++.|++|+++|+++.+.   ++.+.++|..++|.+++++.+..|
T Consensus        98 ~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  176 (524)
T 2xut_A           98 GHAFLAIFEH-SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG  176 (524)
T ss_dssp             HHHHHHHTSS-CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC
T ss_pred             HHHHHHHhcc-cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9988887641 678899999999999999999999999999999999876666   999999999999999999999899


Q ss_pred             chHHHHHHhHHHHHHHHHHhh
Q 012315          259 WPSVFYSFGSLGTVWFTVWLS  279 (466)
Q Consensus       259 w~~~~~~~~~~~~~~~~~~~~  279 (466)
                      |++.|++.+++.++..+...+
T Consensus       177 ~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          177 AAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999888877665555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.65  E-value=4.5e-16  Score=152.33  Aligned_cols=175  Identities=13%  Similarity=0.064  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHhhhhhhhhHHhHhhhhhc-cCCChhhHHHHHHHHHHHHHHHHhhhhhhhccc--CcchHHHHHHHHHH-H
Q 012315          106 VVLCFSAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAVLGFGVVWWS-I  181 (466)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~~~~~~~-~  181 (466)
                      +....+..++............|.+.++ +|.+..+.+++.+...++.+++.++.|++.||+  |+|+.+..+..+.. +
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  333 (451)
T 1pw4_A          254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI  333 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence            3344444444555555666677776555 899999999999999999999999999999999  99999888877766 6


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHh-HHHHHhhhHHHhhcccCch
Q 012315          182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHRFGWP  260 (466)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~ig~~~~~~l~~~~gw~  260 (466)
                      +.++..+.+..+.+.+.+..++.|++.+...+....++.|.+|+++|++++|+.+....+ |..++|.+.+++.+..||+
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~  413 (451)
T 1pw4_A          334 ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD  413 (451)
T ss_dssp             HHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSH
T ss_pred             HHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence            666666654226777778888899988888888899999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHhhh
Q 012315          261 SVFYSFGSLGTVWFTVWLSK  280 (466)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~  280 (466)
                      ..|++.+++.++..++.++.
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          414 GGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999888877766655544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.50  E-value=8.6e-14  Score=134.72  Aligned_cols=146  Identities=8%  Similarity=0.022  Sum_probs=123.1

Q ss_pred             ChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhccchhhHH
Q 012315          137 NPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMN  216 (466)
Q Consensus       137 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~  216 (466)
                      +....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.+  +.+.+++..++.+++.+...+...
T Consensus       257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~  334 (417)
T 2cfq_A          257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCF  334 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC--SHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345668888888889999999999999999999999998888888877777666  777777777788887777777778


Q ss_pred             HHHhcccCCCchhHHHHH-HHHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhhhcccC
Q 012315          217 NILSKWVPVAERSRSLAL-VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSS  284 (466)
Q Consensus       217 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~  284 (466)
                      .++.|.+|++.|+++.++ ++....+|..++|.++|++.+..|+...|.+.+++.++..++.+...+++
T Consensus       335 ~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~  403 (417)
T 2cfq_A          335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            999999999999999999 58888999999999999999988999999988888777766655555543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.50  E-value=1.4e-13  Score=133.99  Aligned_cols=160  Identities=9%  Similarity=-0.012  Sum_probs=128.3

Q ss_pred             HHHHHhhhhhhhhHHhHhhh-hh-ccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHH
Q 012315          111 SAFLLCNMDRVNMSIAILPM-SA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV  188 (466)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  188 (466)
                      +..++............|.+ .+ .+|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++.+++.++..+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~  344 (438)
T 3o7q_A          265 LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF  344 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            33333344444555555555 54 45999999999999999999999999999999999999999999999998888887


Q ss_pred             HhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccC-chHHHHHHh
Q 012315          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFG  267 (466)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-w~~~~~~~~  267 (466)
                      .+  +.+.++ ..++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.|++.+..| ++..|++.+
T Consensus       345 ~~--~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~  419 (438)
T 3o7q_A          345 AG--GHVGLI-ALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPA  419 (438)
T ss_dssp             CC--HHHHHH-HHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHH
T ss_pred             cC--CcHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            76  555443 447888999999999999999999855 888888877 567999999999999999998 999988766


Q ss_pred             HHHHHHHH
Q 012315          268 SLGTVWFT  275 (466)
Q Consensus       268 ~~~~~~~~  275 (466)
                      ++.++..+
T Consensus       420 ~~~~~~~~  427 (438)
T 3o7q_A          420 LCFAVIFI  427 (438)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55444333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.47  E-value=3.3e-13  Score=133.49  Aligned_cols=179  Identities=13%  Similarity=0.003  Sum_probs=132.6

Q ss_pred             HHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHH
Q 012315          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP  187 (466)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  187 (466)
                      ......+......+.+....+.+.+..+.+............+...++.++.+++.||+|||+.++.+...+.++.+..+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~  360 (491)
T 4gc0_A          281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG  360 (491)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHH
Confidence            33334444444455666677888888898888888888888899999999999999999999999999988888876665


Q ss_pred             HHhhh--chhHHHHHHHHHHhh-hccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhc------ccC
Q 012315          188 VAAKL--GLPFLLVVRVFMGIG-EGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH------RFG  258 (466)
Q Consensus       188 ~~~~~--~~~~l~~~~~l~G~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~------~~g  258 (466)
                      .....  +.+..++..++...+ .....+..+.+.+|.+|.+.|++++|+......+|..+++.+.+.+.+      ..+
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~  440 (491)
T 4gc0_A          361 TAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH  440 (491)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            44211  122222222222222 223456778999999999999999999999999999999888766543      345


Q ss_pred             chHHHHHHhHHHHHHHHHHhhhcccCCC
Q 012315          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPA  286 (466)
Q Consensus       259 w~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (466)
                      +...|++.++++++..+..+++.||.+.
T Consensus       441 ~~~~~~i~~~~~~~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          441 NGFSYWIYGCMGVLAALFMWKFVPETKG  468 (491)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence            6778888888888888888888887653

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.38  E-value=3.3e-12  Score=126.32  Aligned_cols=163  Identities=14%  Similarity=0.059  Sum_probs=125.8

Q ss_pred             hhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHH-----HHHHHHHHHHHHHHHHh----
Q 012315          121 VNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG-----FGVVWWSIATALTPVAA----  190 (466)
Q Consensus       121 ~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-----~~~~~~~~~~~~~~~~~----  190 (466)
                      ......+|. ..+.++.+..+.+++.+...++..++.++.|++.||+|||+...     .+.++.+++.++..+..    
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (491)
T 4aps_A          300 EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG  379 (491)
T ss_dssp             GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC
T ss_pred             hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            333444454 44456777678888899999999999999999999999986655     77777777776666542    


Q ss_pred             ---hhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCchHHHHHHh
Q 012315          191 ---KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFG  267 (466)
Q Consensus       191 ---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~  267 (466)
                         ..+.+.+++..++.|++.+...+....++.|.+|+++|++++|+.+....+|..+++.+.+++.+ .++...|.+.+
T Consensus       380 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~  458 (491)
T 4aps_A          380 TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFG  458 (491)
T ss_dssp             CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTH
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence               12567777888899999999899999999999999999999999999999999999999988866 46777888888


Q ss_pred             HHHHHHHHHHhhhcccC
Q 012315          268 SLGTVWFTVWLSKAHSS  284 (466)
Q Consensus       268 ~~~~~~~~~~~~~~~~~  284 (466)
                      ++.++..+..++..++.
T Consensus       459 ~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          459 LGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             HHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88777766665554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.22  E-value=5.2e-12  Score=120.28  Aligned_cols=160  Identities=11%  Similarity=-0.056  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHhHhhhhhc-cCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHH-HHHH
Q 012315          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW-WSIA  182 (466)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~-~~~~  182 (466)
                      .+....+..++.......+....|.+.++ +|.++.+.+++.+...++..++.++.|++.||++++  +..+... ...+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~  277 (375)
T 2gfp_A          200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAG  277 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTS
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            34444444555555556666677776555 899999999999999999999999999999999883  2333322 2222


Q ss_pred             HH--HHHHHhhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcccCch
Q 012315          183 TA--LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP  260 (466)
Q Consensus       183 ~~--~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~gw~  260 (466)
                      ..  ........+.+.+++..++.|++.+...+...+++.|.+| ++|+++.|+.+....+|..++|.+.+.+.+..+|+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~  356 (375)
T 2gfp_A          278 LLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGS  356 (375)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHH
T ss_pred             HHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            22  2222211256777778889999999999999999999998 89999999999999999999999999998877787


Q ss_pred             HHHHHHh
Q 012315          261 SVFYSFG  267 (466)
Q Consensus       261 ~~~~~~~  267 (466)
                      ..+.+.+
T Consensus       357 ~~~~~~~  363 (375)
T 2gfp_A          357 LGLLMTL  363 (375)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.92  E-value=1.7e-09  Score=107.72  Aligned_cols=144  Identities=11%  Similarity=0.059  Sum_probs=102.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhh----cccCc----chHHHHHHHHHHHHHHHHHHHh-------hhchhHHHHHHHHH
Q 012315          140 TVGLIQSSFFWGYLLTQIAGGIWA----DTVGG----KAVLGFGVVWWSIATALTPVAA-------KLGLPFLLVVRVFM  204 (466)
Q Consensus       140 ~~g~~~~~~~~~~~~~~~~~g~l~----dr~g~----r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~l~  204 (466)
                      ..+++.....++..++.++.+++.    ||.|+    ++.+.++.++.+++.++.++..       ..+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            456677777777777888888775    55543    3466677777777777666532       12567777888999


Q ss_pred             HhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhccc--Cc---------hHHHHHHhHHHHHH
Q 012315          205 GIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF--GW---------PSVFYSFGSLGTVW  273 (466)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~--gw---------~~~~~~~~~~~~~~  273 (466)
                      |++.+...+...+++.|.+|+++||+++|+.+....+|..++|.+.+.+.+..  +|         +..|++.+++.++.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA  495 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988742  23         33366666666666


Q ss_pred             HHHHhhhccc
Q 012315          274 FTVWLSKAHS  283 (466)
Q Consensus       274 ~~~~~~~~~~  283 (466)
                      .++.++..++
T Consensus       496 ~~~~~~~~~~  505 (524)
T 2xut_A          496 AIVFALYARS  505 (524)
T ss_dssp             HHHHC-----
T ss_pred             HHHHHHHHHH
Confidence            5555444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	466
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	5e-25
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	4e-04
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	2e-09
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	3e-05

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score =  104 bits (260), Expect = 5e-25
 Identities = 64/414 (15%), Positives = 132/414 (31%), Gaps = 53/414 (12%)

Query: 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGI 161
           RW I +  F  +    + R N ++A +P   E  ++   +G   S     Y  ++   G 
Sbjct: 23  RWQIFLGIFFGYAAYYLVRKNFALA-MPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 81

Query: 162 WADTVGGKAVLGFGVVWWSIATALTPV--AAKLGLPFLLVVRVFMGIGEGVAMPAMNNIL 219
            +D    +  L  G++  +           A   +  + V+    G  +G+  P     +
Sbjct: 82  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141

Query: 220 SKWVPVAERSRSLALVYSGMYLGS-VTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278
             W    ER   +++      +G  +  L F   +     W +  Y       +      
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 201

Query: 279 SKAHSSPAEDPQLRPAEKKLIVSSCASKE-----PVKTIPWGLILSKPPVWALIVSHFCH 333
           +    +P         E K       +++       K I    +L    +W + +++   
Sbjct: 202 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV 261

Query: 334 NWGTFILLTWMPTYYNQ------------------------------------------I 351
               + +L W PTY  +                                           
Sbjct: 262 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 321

Query: 352 MQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLL 410
           +  +  +  A  +  ++   +P + ++CM             +  +  ++AP + +G   
Sbjct: 322 VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA 381

Query: 411 GLSNTAGVLAG-VFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEK 463
           G +   G L G V  +A  GY +    WD  F V +G  ++   +  +   GEK
Sbjct: 382 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 435

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 22/213 (10%), Positives = 59/213 (27%), Gaps = 4/213 (1%)

Query: 70  KFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILP 129
             E         +E    +  +   + +       +  +  +   +  +    +  +   
Sbjct: 216 IEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTY 275

Query: 130 MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS---IATALT 186
           +    ++           + +  +   +  G  +D V        GV + +   IAT + 
Sbjct: 276 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 335

Query: 187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVT 245
            +         ++  + +G      +  +     +  P      +        YL GSV 
Sbjct: 336 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 395

Query: 246 GLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278
             A   + +  FGW   F        +   + +
Sbjct: 396 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 38/389 (9%), Positives = 95/389 (24%), Gaps = 37/389 (9%)

Query: 107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV 166
           +     F    +         + +    + + +  G+I ++     LL Q   G+ +D +
Sbjct: 11  MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL 70

Query: 167 GGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA 226
           G +  L + +    +  A   +     L    ++   +  G  +         +    + 
Sbjct: 71  GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE 130

Query: 227 ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPA 286
           + SR     +    +    G A    ++      +  + F         + +    +   
Sbjct: 131 KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190

Query: 287 EDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVS----------------- 329
                  A       S  S +    +     L    ++ + VS                 
Sbjct: 191 APSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF 250

Query: 330 ------------------HFCHNWGTFILLTWMPTYYNQIMQSIGFLGPAFFLTQLSHVD 371
                                +    F     +     +    +     +  +   S   
Sbjct: 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT 310

Query: 372 SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP--RYSGVLLGLSNTAGVLAGVFGTAATG 429
           S    V+          F   G +            + + L        LA +F +   G
Sbjct: 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG 370

Query: 430 YILQHGSWDDVFKVSVGLYLVGTAVWNLF 458
            + +   +   + V   + L  T +    
Sbjct: 371 NMYESIGFQGAYLVLGLVALGFTLISVFT 399

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 16/187 (8%), Positives = 46/187 (24%), Gaps = 3/187 (1%)

Query: 93  VPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGY 152
                  PK WF+ +         ++     +       A         G + +      
Sbjct: 213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLN 272

Query: 153 LLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAM 212
                   +  + +GGK  L       S+    +  A         +++          +
Sbjct: 273 ASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVV--ILKTLHMFEVPFLL 330

Query: 213 PAMNNILSKWVPVAERSRSLALVYS-GMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 271
                 ++    V   +    + +     L  +     +  +    G+   +   G +  
Sbjct: 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVAL 390

Query: 272 VWFTVWL 278
            +  + +
Sbjct: 391 GFTLISV 397

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	466
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.94
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.62
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.54

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.1e-35  Score=283.10  Aligned_cols=358  Identities=15%  Similarity=0.210  Sum_probs=270.9

Q ss_pred             CchHHHHHHHHHHHHHhhhhhhhhHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHH
Q 012315          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (466)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (466)
                      +.+|.++..++++++..+++...++...|.+. ++|+|.+|+|++.+++.++..++++++|+++||+|||+++.++.++.
T Consensus        21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~   99 (447)
T d1pw4a_          21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA   99 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            45688888888888988888888888888776 58999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh--hchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHhHHHHHhhhHHHhhcc-
Q 012315          180 SIATALTPVAAK--LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-  256 (466)
Q Consensus       180 ~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~-  256 (466)
                      +++.+++++++.  .+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+. 
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  179 (447)
T d1pw4a_         100 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF  179 (447)
T ss_dssp             HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred             HHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence            999988877541  27789999999999999999999999999999999999999999999999999999999887765 


Q ss_pred             cCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHH-----HHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHH
Q 012315          257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEK-----KLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF  331 (466)
Q Consensus       257 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (466)
                      .+|++.|++.+++.++..++.+...++.++.......++.     +...+..+++...++...+..++++.++......+
T Consensus       180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (447)
T d1pw4a_         180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV  259 (447)
T ss_dssp             CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHH
T ss_pred             hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhh
Confidence            4799999998888888777777776666554332211111     11111112222233345677889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH----------------------------------------HHHHHHhHHHHHHHHHH--hc
Q 012315          332 CHNWGTFILLTWMPTYYNQ----------------------------------------IMQSIGFLGPAFFLTQL--SH  369 (466)
Q Consensus       332 ~~~~~~~~~~~~~~~~l~~----------------------------------------~~~~~~~~~~~~~~~~~--~~  369 (466)
                      +.....+....+.+.|+.+                                        .................  ..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (447)
T d1pw4a_         260 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP  339 (447)
T ss_dssp             HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             hhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcc
Confidence            9888889999999999876                                        00111111111111111  12


Q ss_pred             CCchHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHHHHHHHH-HHHHHHHHHHHhccCcchhHHHHHHHH
Q 012315          370 VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLA-GVFGTAATGYILQHGSWDDVFKVSVGL  447 (466)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g-~~i~~~~~g~l~~~~g~~~~~~~~~~~  447 (466)
                      ..+.+...++.++.++......+....+..+..| +.+|++.|+.+..++++ ..++|.+.|++.|..|+...|++.+++
T Consensus       340 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~  419 (447)
T d1pw4a_         340 AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG  419 (447)
T ss_dssp             TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            2344555555555555555556666777777776 68999999999988875 566899999999999999998888777


Q ss_pred             HHHHHHHHHHh
Q 012315          448 YLVGTAVWNLF  458 (466)
Q Consensus       448 ~~~~~~~~~~~  458 (466)
                      .+++.++..++
T Consensus       420 ~~~~~~~~~~~  430 (447)
T d1pw4a_         420 SILAVILLIVV  430 (447)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77766655544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=4.9e-25  Score=210.35  Aligned_cols=349  Identities=12%  Similarity=0.013  Sum_probs=234.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHH
Q 012315          104 FIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA  182 (466)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  182 (466)
                      +.++...+.+++..+......+.+|. +.+++|+|..++|++.+++.++..++++++|+++||+|||++++++..+..++
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~   86 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            33455556666666777777788886 66779999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHhhhchh----HHHHHHHHHHhhhccchhhHHHHHhcccCC--CchhHHHHHHHHHHHhHHHHHhhhHHHhhcc
Q 012315          183 TALTPVAAKLGLP----FLLVVRVFMGIGEGVAMPAMNNILSKWVPV--AERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (466)
Q Consensus       183 ~~~~~~~~~~~~~----~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~  256 (466)
                      ..+..+..  +..    ..++.+.+.+.+.+...........+..++  +++....+........+..+++.+++.+.+.
T Consensus        87 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  164 (417)
T d1pv7a_          87 FAPFFIFI--FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI  164 (417)
T ss_dssp             HHHHHHHT--HHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhh--hhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc
Confidence            88887765  332    234445555555555444444444443322  3445567778888899999999999988774


Q ss_pred             cCchHHHHHHhHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHhhcccCCCCCCCcchhhhhcChhHHHHHHHHHHHHHH
Q 012315          257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWG  336 (466)
Q Consensus       257 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (466)
                       +|+..+........+..+...+..++.+...++.++++.        .+++.......+..+++..+............
T Consensus       165 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (417)
T d1pv7a_         165 -NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGA--------NHSAFSLKLALELFRQPKLWFLSLYVIGVSCT  235 (417)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHS--------CCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred             -cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhh--------hcccccccccccccccccccchhhhhHHHHHH
Confidence             556666666666665555555555555443332221111        11111122233344444444443333333333


Q ss_pred             HHHHHHHHHHHHHH----------------------------------------HHHHHHhHHHHHHHHHHhcCCchHHH
Q 012315          337 TFILLTWMPTYYNQ----------------------------------------IMQSIGFLGPAFFLTQLSHVDSPAMA  376 (466)
Q Consensus       337 ~~~~~~~~~~~l~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (466)
                      ........+.+...                                        .....+..+.++........++.+..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (417)
T d1pv7a_         236 YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEV  315 (417)
T ss_dssp             HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred             HHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchh
Confidence            22222222222111                                        34445555566666666777778887


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhcccCc-cchhhHHHHHH-HHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Q 012315          377 VLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSN-TAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAV  454 (466)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~-~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  454 (466)
                      ++..++.+.+.+...+....+..+..| +.|+++.|+.. ....+|..++|.+.|++.|..|++..|++.+++.+++.++
T Consensus       316 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  395 (417)
T d1pv7a_         316 VILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI  395 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence            777777777777778888888888776 68999999864 5567999999999999999999999999988888877777


Q ss_pred             HHHhcCCCc
Q 012315          455 WNLFSTGEK  463 (466)
Q Consensus       455 ~~~~~~~~~  463 (466)
                      ..+..++++
T Consensus       396 ~~~~l~~~~  404 (417)
T d1pv7a_         396 SVFTLSGPG  404 (417)
T ss_dssp             HHHHSCCSS
T ss_pred             HHHhhcCCC
Confidence            666655444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=5e-16  Score=146.94  Aligned_cols=160  Identities=8%  Similarity=0.003  Sum_probs=139.8

Q ss_pred             hHHhHhhhhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 012315          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (466)
Q Consensus       123 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (466)
                      .....+...++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.+  +.+.+++..+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  320 (417)
T d1pv7a_         243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKT  320 (417)
T ss_dssp             HHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHHH
T ss_pred             ccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccccc--ccchhhHHHH
Confidence            33334445555666778889999999999999999999999999999999999999999999999988  9999999999


Q ss_pred             HHHhhhccchhhHHHHHhcccCCCchhHHHHHH-HHHHHhHHHHHhhhHHHhhcccCchHHHHHHhHHHHHHHHHHhhhc
Q 012315          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALV-YSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA  281 (466)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~ig~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~  281 (466)
                      +.|++.+...+...+++.|.+|+++|+++.++. +....+|..++|.++|++.+.+|++..|++.+++.++..++..+..
T Consensus       321 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l  400 (417)
T d1pv7a_         321 LHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL  400 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999985 5677899999999999999999999999999988887777666665


Q ss_pred             ccC
Q 012315          282 HSS  284 (466)
Q Consensus       282 ~~~  284 (466)
                      +++
T Consensus       401 ~~~  403 (417)
T d1pv7a_         401 SGP  403 (417)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=1.7e-14  Score=138.40  Aligned_cols=168  Identities=12%  Similarity=0.057  Sum_probs=126.9

Q ss_pred             HHhhhhhhhhHHhHhh-hhhccCCChhhHHHHHHHHHHHHHHHHhhhhhhhcccCcchHHHHHHHHHHHHHHHH---HHH
Q 012315          114 LLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT---PVA  189 (466)
Q Consensus       114 ~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~  189 (466)
                      ++............|. +.+.++.+..+.++..+...++..++.++.|++.||++||+..........+.....   ...
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (447)
T d1pw4a_         259 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN  338 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             hhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhc
Confidence            3333333344444444 667789999999999999999999999999999999998765544443333322222   222


Q ss_pred             hhhchhHHHHHHHHHHhhhccchhhHHHHHhcccCCCchhHHHHHHHHHHHh-HHHHHhhhHHHhhcccCchHHHHHHhH
Q 012315          190 AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHRFGWPSVFYSFGS  268 (466)
Q Consensus       190 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~ig~~~~~~l~~~~gw~~~~~~~~~  268 (466)
                      ...+.+..++..++.|++.+...+....+..|.+|++.|++++|+.+....+ |.+++|.+.+++.+.+||+..|++.++
T Consensus       339 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~  418 (447)
T d1pw4a_         339 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG  418 (447)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence            2226677777888889988888888999999999999999999999888776 567789999999999999999988877


Q ss_pred             HHHHHHHHHhhhc
Q 012315          269 LGTVWFTVWLSKA  281 (466)
Q Consensus       269 ~~~~~~~~~~~~~  281 (466)
                      +.++..++...+.
T Consensus       419 ~~~~~~~~~~~~~  431 (447)
T d1pw4a_         419 GSILAVILLIVVM  431 (447)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7766665554443